Citrus Sinensis ID: 022834
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 291 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LSV0 | 289 | Glyoxylate/succinic semia | yes | no | 0.979 | 0.986 | 0.803 | 1e-132 | |
| F4I907 | 358 | Glyoxylate/succinic semia | no | no | 0.989 | 0.804 | 0.569 | 8e-90 | |
| Q5ZLS7 | 553 | Putative oxidoreductase G | yes | no | 0.965 | 0.508 | 0.508 | 6e-78 | |
| Q5RKH0 | 552 | Putative oxidoreductase G | yes | no | 0.965 | 0.509 | 0.508 | 8e-78 | |
| A4FUF0 | 553 | Putative oxidoreductase G | yes | no | 0.965 | 0.508 | 0.508 | 1e-77 | |
| Q49A26 | 553 | Putative oxidoreductase G | yes | no | 0.965 | 0.508 | 0.508 | 2e-77 | |
| Q562D5 | 534 | Putative oxidoreductase G | yes | no | 0.965 | 0.526 | 0.501 | 2e-76 | |
| Q5R7T2 | 553 | Putative oxidoreductase G | yes | no | 0.965 | 0.508 | 0.501 | 2e-76 | |
| Q5RKN4 | 462 | Putative oxidoreductase G | yes | no | 0.965 | 0.608 | 0.482 | 2e-74 | |
| Q922P9 | 546 | Putative oxidoreductase G | yes | no | 0.945 | 0.503 | 0.501 | 5e-74 |
| >sp|Q9LSV0|GLYR1_ARATH Glyoxylate/succinic semialdehyde reductase 1 OS=Arabidopsis thaliana GN=GLYR1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/285 (80%), Positives = 257/285 (90%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V SPAEVIKKC T
Sbjct: 1 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 61 IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQL+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG M
Sbjct: 121 SGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSM 180
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN FSEGLVLA+KSGL TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDM
Sbjct: 181 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 240
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
RLALALGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV E VK
Sbjct: 241 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 285
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Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May functions in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1EC: 1 |
| >sp|F4I907|GLYR2_ARATH Glyoxylate/succinic semialdehyde reductase 2, chloroplastic OS=Arabidopsis thaliana GN=GLYR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 330 bits (846), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 164/288 (56%), Positives = 207/288 (71%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+ +GFLG+GIMG ++ NL++ G VTVWNRT SKCD LV GA SP EV C +T
Sbjct: 67 VSIGFLGMGIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLT 126
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
MLADP +A+ V K G + I GKGY+D+STVD +SI IS+ I G FLEAPV
Sbjct: 127 FAMLADPESAIDVACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPV 186
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQL+ L+AG+K LY++A L+++GK F+LGEVGNGA MKLVVNMIMG M
Sbjct: 187 SGSKKPAEDGQLIFLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMGSM 246
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
M +F+EG++L++K GLDP L++V+ G I PM+ KGP+M++S Y AFPLKHQQKDM
Sbjct: 247 MASFAEGILLSQKVGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDM 306
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 288
RLAL L + + S PIAAAANE +K A+S GL D DFSAV E +K K
Sbjct: 307 RLALGLAESVSQSTPIAAAANELYKVAKSYGLSDEDFSAVIEALKAAK 354
|
Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May functions in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 1 |
| >sp|Q5ZLS7|GLYR1_CHICK Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (743), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 143/281 (50%), Positives = 193/281 (68%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508
Query: 242 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 282
LA+ALGD P+AAAANE +K+A++L DND SAV+
Sbjct: 509 LAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549
|
May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of MAPK14 and specifically regulating MAPK14 signaling. Gallus gallus (taxid: 9031) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q5RKH0|GLYR1_RAT Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 143/281 (50%), Positives = 193/281 (68%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 327
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 328 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 387
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 388 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 447
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 448 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 507
Query: 242 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 282
LA+ALGD P+AAAANE +K+A++L DND SAV+
Sbjct: 508 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 548
|
May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3). Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|A4FUF0|GLYR1_BOVIN Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (741), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/281 (50%), Positives = 193/281 (68%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508
Query: 242 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 282
LA+ALGD P+AAAANE +K+A++L DND SAV+
Sbjct: 509 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549
|
May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3). Bos taurus (taxid: 9913) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q49A26|GLYR1_HUMAN Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 289 bits (739), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/281 (50%), Positives = 192/281 (68%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 449 ATIAEGLTLAHVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508
Query: 242 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 282
LA+ALGD P+AAAANE +K+A++L DND SAV+
Sbjct: 509 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549
|
May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q562D5|GLYR1_XENTR Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/281 (50%), Positives = 193/281 (68%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 250 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITF 309
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
+ADP AA +V GVL+ I PGK Y+DMSTVD ET ++++ I S+GG FLEAPVS
Sbjct: 310 ACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVS 369
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ +Y++ S +GK +FFLGEVGN A+M L++NM+ G M
Sbjct: 370 GNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLGEVGNAARMMLILNMVQGSFM 429
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EG+ LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 430 ATIAEGMTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 489
Query: 242 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 282
LA+ALGD P+AAAANE +K+A++L DND SAV+
Sbjct: 490 LAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 530
|
May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling. Xenopus tropicalis (taxid: 8364) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q5R7T2|GLYR1_PONAB Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/281 (50%), Positives = 192/281 (68%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVW+RT KCD + GA +G +PAEV+ C IT
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I P K Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508
Query: 242 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 282
LA+ALGD P+AAAANE +K+A++L DND SAV+
Sbjct: 509 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549
|
May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3). Pongo abelii (taxid: 9601) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q5RKN4|GLYR1_DANRE Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 191/282 (67%), Gaps = 1/282 (0%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
+GFLGLG+MG + NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 177 RIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITF 236
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y++MSTVD ET ++S+ ITS+GG FLEAPVS
Sbjct: 237 SCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVS 296
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLVVNMIMGCM 180
GS+Q + G LVI++AG++++Y++ S +GK +FF+ GE GN A+M L++NM+ G
Sbjct: 297 GSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARMMLILNMVQGSF 356
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
M T +EGL LA+ +G +T LD+L G +A+ K +LQ N+ P + LKH QKD+
Sbjct: 357 MATIAEGLTLAQATGQSQQTFLDILCQGQMASTFVDQKCQNILQGNFKPDYYLKHIQKDL 416
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 282
RLA+++GD P+AAAANE +K+A++L DND SAV+
Sbjct: 417 RLAISMGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 458
|
May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling. Danio rerio (taxid: 7955) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q922P9|GLYR1_MOUSE Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 277 bits (709), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 141/281 (50%), Positives = 190/281 (67%), Gaps = 6/281 (2%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT K GA +G +PAEV+ C IT
Sbjct: 268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK------EGARLGRTPAEVVSTCDITF 321
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 322 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 381
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 382 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 441
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 442 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 501
Query: 242 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 282
LA+ALGD P+AAAANE +K+A++L DND SAV+
Sbjct: 502 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 542
|
May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3). Mus musculus (taxid: 10090) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 291 | ||||||
| 225468850 | 291 | PREDICTED: putative oxidoreductase GLYR1 | 1.0 | 1.0 | 0.810 | 1e-135 | |
| 224129290 | 289 | predicted protein [Populus trichocarpa] | 0.979 | 0.986 | 0.814 | 1e-133 | |
| 15375068 | 289 | gamma hydroxybutyrate dehydrogenase [Ara | 0.979 | 0.986 | 0.803 | 1e-131 | |
| 18404556 | 289 | glyoxylate reductase 1 [Arabidopsis thal | 0.979 | 0.986 | 0.803 | 1e-131 | |
| 225468852 | 287 | PREDICTED: putative oxidoreductase GLYR1 | 0.986 | 1.0 | 0.797 | 1e-130 | |
| 251836884 | 310 | Chain A, Structure Of Glyoxylate Reducta | 0.979 | 0.919 | 0.803 | 1e-130 | |
| 255567180 | 289 | 3-hydroxyisobutyrate dehydrogenase, puta | 0.979 | 0.986 | 0.803 | 1e-130 | |
| 297835692 | 289 | 6-phosphogluconate dehydrogenase NAD-bin | 0.979 | 0.986 | 0.8 | 1e-129 | |
| 326505858 | 291 | predicted protein [Hordeum vulgare subsp | 0.979 | 0.979 | 0.785 | 1e-126 | |
| 413922719 | 295 | 2-hydroxy-3-oxopropionate reductase [Zea | 0.979 | 0.966 | 0.782 | 1e-126 |
| >gi|225468850|ref|XP_002266252.1| PREDICTED: putative oxidoreductase GLYR1 isoform 1 [Vitis vinifera] gi|147861759|emb|CAN78910.1| hypothetical protein VITISV_032948 [Vitis vinifera] gi|297736660|emb|CBI25677.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/291 (81%), Positives = 265/291 (91%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA+S+NL+R+GFK+TVWNRTLSKCDELV GA++G +PA V+KKC T
Sbjct: 1 MEVGFLGLGIMGKAMSINLIRSGFKLTVWNRTLSKCDELVELGASIGETPAAVVKKCNYT 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DP+ ALSVVFDK GVLEQIC GKGYIDMSTV +TS KIS AITSKGG FLEAPV
Sbjct: 61 IAMLSDPSVALSVVFDKDGVLEQICHGKGYIDMSTVGADTSSKISEAITSKGGSFLEAPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQLVIL+AGEKALYDEAI A +++GKK+FFLG+VGNGAKMKLVVNMIMG M
Sbjct: 121 SGSKKPAEDGQLVILAAGEKALYDEAIPAFDIMGKKSFFLGQVGNGAKMKLVVNMIMGSM 180
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN FSEGLVLA++SGL+P TLLDVLDLGGIANPMF+ KGPTM+Q+NY+PAFPLKHQQKDM
Sbjct: 181 MNAFSEGLVLADRSGLNPHTLLDVLDLGGIANPMFRLKGPTMIQNNYSPAFPLKHQQKDM 240
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS 291
RLALALGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV+E VK L+ SS
Sbjct: 241 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVYETVKTLEHSS 291
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129290|ref|XP_002320548.1| predicted protein [Populus trichocarpa] gi|222861321|gb|EEE98863.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/285 (81%), Positives = 264/285 (92%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKC+ELV GA++G +PA+V+KKC +T
Sbjct: 1 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCNELVEFGASIGETPAQVVKKCRLT 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DPAAALSVVFDK GVLEQI GKGYIDMSTVD ETS KIS+AITSKGG FLEAPV
Sbjct: 61 IAMLSDPAAALSVVFDKDGVLEQIDSGKGYIDMSTVDPETSSKISQAITSKGGAFLEAPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSKQPAETGQLVIL+AG+K LY+E+I A +V+GKK+FFLG+VGNGAKMKLVVNMIMG M
Sbjct: 121 SGSKQPAETGQLVILAAGDKGLYEESIPAFDVLGKKSFFLGQVGNGAKMKLVVNMIMGSM 180
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN FSEGLVL+E+SGL+P LLD+LDLGGIANPMF+GKGP ML+SN++PAFPLKHQQKDM
Sbjct: 181 MNAFSEGLVLSERSGLNPHDLLDILDLGGIANPMFRGKGPAMLKSNHSPAFPLKHQQKDM 240
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
RLALALGDENAVSMP+AAAANE+FKKARS+GLGD DFSAV E++K
Sbjct: 241 RLALALGDENAVSMPVAAAANESFKKARSMGLGDLDFSAVHEILK 285
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15375068|gb|AAK94781.1| gamma hydroxybutyrate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/285 (80%), Positives = 257/285 (90%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V SPAEVIKKC T
Sbjct: 1 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 61 IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQL+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG M
Sbjct: 121 SGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSM 180
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN FSEGLVLA+KSGL TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDM
Sbjct: 181 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMTKSSYPPAFPLKHQQKDM 240
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
RLALALGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV E VK
Sbjct: 241 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 285
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18404556|ref|NP_566768.1| glyoxylate reductase 1 [Arabidopsis thaliana] gi|75274028|sp|Q9LSV0.1|GLYR1_ARATH RecName: Full=Glyoxylate/succinic semialdehyde reductase 1; Short=AtGLYR1; Short=AtGR1; Short=SSA reductase 1; AltName: Full=Gamma-hydroxybutyrate dehydrogenase; Short=AtGHBDH gi|9279732|dbj|BAB01322.1| dehydrogenase-like protein [Arabidopsis thaliana] gi|90962980|gb|ABE02414.1| At3g25530 [Arabidopsis thaliana] gi|332643500|gb|AEE77021.1| glyoxylate reductase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/285 (80%), Positives = 257/285 (90%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V SPAEVIKKC T
Sbjct: 1 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 61 IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQL+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG M
Sbjct: 121 SGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSM 180
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN FSEGLVLA+KSGL TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDM
Sbjct: 181 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 240
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
RLALALGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV E VK
Sbjct: 241 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 285
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225468852|ref|XP_002266296.1| PREDICTED: putative oxidoreductase GLYR1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 232/291 (79%), Positives = 261/291 (89%), Gaps = 4/291 (1%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA+S+NL+R+GFK+TVWNRTLSKCDELV GA++G +PA V+KKC T
Sbjct: 1 MEVGFLGLGIMGKAMSINLIRSGFKLTVWNRTLSKCDELVELGASIGETPAAVVKKCNYT 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DP+ ALSV GVLEQIC GKGYIDMSTV +TS KIS AITSKGG FLEAPV
Sbjct: 61 IAMLSDPSVALSV----NGVLEQICHGKGYIDMSTVGADTSSKISEAITSKGGSFLEAPV 116
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQLVIL+AGEKALYDEAI A +++GKK+FFLG+VGNGAKMKLVVNMIMG M
Sbjct: 117 SGSKKPAEDGQLVILAAGEKALYDEAIPAFDIMGKKSFFLGQVGNGAKMKLVVNMIMGSM 176
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN FSEGLVLA++SGL+P TLLDVLDLGGIANPMF+ KGPTM+Q+NY+PAFPLKHQQKDM
Sbjct: 177 MNAFSEGLVLADRSGLNPHTLLDVLDLGGIANPMFRLKGPTMIQNNYSPAFPLKHQQKDM 236
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS 291
RLALALGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV+E VK L+ SS
Sbjct: 237 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVYETVKTLEHSS 287
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|251836884|pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) | Back alignment and taxonomy information |
|---|
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/285 (80%), Positives = 257/285 (90%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V SPAEVIKKC T
Sbjct: 22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 81
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 82 IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 141
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQL+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG M
Sbjct: 142 SGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSM 201
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN FSEGLVLA+KSGL TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDM
Sbjct: 202 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 261
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
RLALALGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV E VK
Sbjct: 262 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567180|ref|XP_002524571.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] gi|223536124|gb|EEF37779.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/285 (80%), Positives = 256/285 (89%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA++ NL+++GFKVTVWNRTLSKC ELV GA++G SPA V+KKC T
Sbjct: 1 MEVGFLGLGIMGKAMATNLIKSGFKVTVWNRTLSKCSELVNLGASIGESPAAVVKKCKTT 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I M++DPAAALSV FDK GVLE+IC GKGYIDMSTV ETSIKIS AIT+KGG FLEAPV
Sbjct: 61 IAMISDPAAALSVAFDKDGVLEEICSGKGYIDMSTVSPETSIKISSAITAKGGSFLEAPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSKQPAE GQLVIL+AG+KALYD AI A +V+GKK+FFLGEVGNGAKMKLVVNMIMG M
Sbjct: 121 SGSKQPAEAGQLVILAAGDKALYDAAIPAFDVMGKKSFFLGEVGNGAKMKLVVNMIMGSM 180
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN FSEGLVLAEKSGLDP LL V+DLGGIANPMF+GKGP ML+ N++ +FPLKHQQKDM
Sbjct: 181 MNAFSEGLVLAEKSGLDPYDLLGVVDLGGIANPMFRGKGPAMLKGNHSTSFPLKHQQKDM 240
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
RLALALGDENAVSMP+AAAANEAFKKARS+GLGD DFSAV+E+VK
Sbjct: 241 RLALALGDENAVSMPVAAAANEAFKKARSMGLGDLDFSAVYEIVK 285
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297835692|ref|XP_002885728.1| 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331568|gb|EFH61987.1| 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/285 (80%), Positives = 256/285 (89%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA+SMNLL++GFKVTVWNRTLSKCDELV HGA+V SPAEVIKKC T
Sbjct: 1 MEVGFLGLGIMGKAMSMNLLKHGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 61 IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGWFVEGPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQL+IL+AG+KAL++E+I +V+GK++FFLG+VGNGAKMKL+VNMIMG M
Sbjct: 121 SGSKKPAEDGQLIILAAGDKALFEESIPVFDVLGKRSFFLGQVGNGAKMKLIVNMIMGSM 180
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN FSEGLVLA+KSGL TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDM
Sbjct: 181 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 240
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
RLALALGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV E VK
Sbjct: 241 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 285
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326505858|dbj|BAJ91168.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326518654|dbj|BAJ88356.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/285 (78%), Positives = 252/285 (88%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA++ NLLR+GF+VTVWNRTLSKCDELVA GA VG +PA V+ KC T
Sbjct: 1 MEVGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKCDELVAMGAAVGDTPASVVAKCKYT 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DP+AALSVVFDK GVLEQI GKGY+DMSTVD TS KIS A+ KGG F+EAPV
Sbjct: 61 IAMLSDPSAALSVVFDKDGVLEQIGEGKGYVDMSTVDAATSCKISEAVKQKGGAFVEAPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQLVIL+AG+KALYD+ + A +++GKK+FFLGE+GNGAKMKLVVNMIMG M
Sbjct: 121 SGSKKPAEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSM 180
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN FSEGL LA+KSGL P+TLLDVLDLG IANPMFK KGP+MLQ +Y PAFPLKHQQKDM
Sbjct: 181 MNAFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQKDM 240
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
RLAL+LGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV EV+K
Sbjct: 241 RLALSLGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVHEVLK 285
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413922719|gb|AFW62651.1| 2-hydroxy-3-oxopropionate reductase [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/285 (78%), Positives = 251/285 (88%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA++ NLLR+GF+VTVWNRTL+KC EL A GATVG +PA V+ KC T
Sbjct: 1 MEVGFLGLGIMGKAMATNLLRHGFRVTVWNRTLAKCQELAALGATVGETPASVVSKCRYT 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DP+AALSVVFDK GVLEQI GKGY+DMSTVD TS KIS A+ KGG FLEAPV
Sbjct: 61 IAMLSDPSAALSVVFDKDGVLEQIGSGKGYVDMSTVDAATSTKISEAVKQKGGAFLEAPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQLVIL+AG+K LYD I A +V+GKK+FFLGE+GNGAKMKLVVNM+MG M
Sbjct: 121 SGSKKPAEDGQLVILAAGDKPLYDGMIPAFDVLGKKSFFLGEIGNGAKMKLVVNMVMGSM 180
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN+ SEGL LA+KSGL P+TLLDVLDLG IANPMFK KGPTMLQ +Y+PAFPLKHQQKDM
Sbjct: 181 MNSLSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKLKGPTMLQGSYSPAFPLKHQQKDM 240
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
RLALALGDENAV+MP++AAANEAFKKARSLGLGD DFSAV+EVVK
Sbjct: 241 RLALALGDENAVAMPVSAAANEAFKKARSLGLGDQDFSAVYEVVK 285
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 291 | ||||||
| TAIR|locus:2094518 | 289 | GLYR1 "glyoxylate reductase 1" | 0.979 | 0.986 | 0.764 | 4.5e-114 | |
| TAIR|locus:2007923 | 358 | GLYR2 "glyoxylate reductase 2" | 0.989 | 0.804 | 0.541 | 1e-77 | |
| TIGR_CMR|GSU_1372 | 286 | GSU_1372 "3-hydroxyisobutyrate | 0.969 | 0.986 | 0.556 | 8.1e-76 | |
| UNIPROTKB|F1NFS2 | 575 | GLYR1 "Putative oxidoreductase | 0.962 | 0.486 | 0.482 | 5.1e-67 | |
| UNIPROTKB|F1NFS3 | 553 | GLYR1 "Putative oxidoreductase | 0.962 | 0.506 | 0.482 | 5.1e-67 | |
| UNIPROTKB|Q5ZLS7 | 553 | GLYR1 "Putative oxidoreductase | 0.962 | 0.506 | 0.482 | 5.1e-67 | |
| UNIPROTKB|A4FUF0 | 553 | GLYR1 "Putative oxidoreductase | 0.962 | 0.506 | 0.482 | 6.5e-67 | |
| UNIPROTKB|E2QVM3 | 575 | GLYR1 "Uncharacterized protein | 0.962 | 0.486 | 0.482 | 6.5e-67 | |
| UNIPROTKB|F1RK86 | 553 | GLYR1 "Uncharacterized protein | 0.962 | 0.506 | 0.482 | 6.5e-67 | |
| UNIPROTKB|I3LMN3 | 539 | GLYR1 "Uncharacterized protein | 0.962 | 0.519 | 0.482 | 6.5e-67 |
| TAIR|locus:2094518 GLYR1 "glyoxylate reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 218/285 (76%), Positives = 246/285 (86%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V SPAEVIKKC T
Sbjct: 1 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 61 IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQL+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG M
Sbjct: 121 SGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSM 180
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN FSEGLVLA+KSGL TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDM
Sbjct: 181 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 240
Query: 241 RLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVK 285
RLALALGDENAVSMP+ RSLGLGD DFSAV E VK
Sbjct: 241 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 285
|
|
| TAIR|locus:2007923 GLYR2 "glyoxylate reductase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 156/288 (54%), Positives = 198/288 (68%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+ +GFLG+GIMG ++ NL++ G VTVWNRT SKCD LV GA SP EV C +T
Sbjct: 67 VSIGFLGMGIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLT 126
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
MLADP +A+ V K G + I GKGY+D+STVD +SI IS+ I G FLEAPV
Sbjct: 127 FAMLADPESAIDVACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPV 186
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQL+ L+AG+K LY++A L+++GK F+LGEVGNGA MKLVVNMIMG M
Sbjct: 187 SGSKKPAEDGQLIFLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMGSM 246
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
M +F+EG++L++K GLDP L++V+ G I PM+ KGP+M++S Y AFPLKHQQKDM
Sbjct: 247 MASFAEGILLSQKVGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDM 306
Query: 241 RLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVKDLK 288
RLAL L + + S PI +S GL D DFSAV E +K K
Sbjct: 307 RLALGLAESVSQSTPIAAAANELYKVAKSYGLSDEDFSAVIEALKAAK 354
|
|
| TIGR_CMR|GSU_1372 GSU_1372 "3-hydroxyisobutyrate dehydrogenase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 157/282 (55%), Positives = 189/282 (67%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63
GFLGLGIMG ++ NL+R GF VTVWNR +KC LVA GA SPAEV C ITI M
Sbjct: 5 GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64
Query: 64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123
LADPAAA V F GVLE I G+GYIDMSTVD ETS I A+T++GG FLEAPVSG+
Sbjct: 65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124
Query: 124 KQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNT 183
K+PAE G L+IL+AG+++L+ +A A +GKK LGEVG GA+MKLVVNMIMG MM
Sbjct: 125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTA 184
Query: 184 FSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA 243
EG+ L GLD LL+VLD G +ANPMFKGKG +L + +FPLKH QKD+RLA
Sbjct: 185 LGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLA 244
Query: 244 LALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVK 285
+ LGD + R+ G D DF+AVF V++
Sbjct: 245 VELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286
|
|
| UNIPROTKB|F1NFS2 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 135/280 (48%), Positives = 183/280 (65%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 291 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 350
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 351 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 410
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 411 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 470
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 471 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 530
Query: 242 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVF 281
LA+ALGD P+ ++L DND SAV+
Sbjct: 531 LAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVY 570
|
|
| UNIPROTKB|F1NFS3 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 135/280 (48%), Positives = 183/280 (65%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508
Query: 242 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVF 281
LA+ALGD P+ ++L DND SAV+
Sbjct: 509 LAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVY 548
|
|
| UNIPROTKB|Q5ZLS7 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 135/280 (48%), Positives = 183/280 (65%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508
Query: 242 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVF 281
LA+ALGD P+ ++L DND SAV+
Sbjct: 509 LAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVY 548
|
|
| UNIPROTKB|A4FUF0 GLYR1 "Putative oxidoreductase GLYR1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 135/280 (48%), Positives = 183/280 (65%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508
Query: 242 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVF 281
LA+ALGD P+ ++L DND SAV+
Sbjct: 509 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVY 548
|
|
| UNIPROTKB|E2QVM3 GLYR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 135/280 (48%), Positives = 183/280 (65%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 291 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 350
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 351 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 410
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 411 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 470
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 471 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 530
Query: 242 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVF 281
LA+ALGD P+ ++L DND SAV+
Sbjct: 531 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVY 570
|
|
| UNIPROTKB|F1RK86 GLYR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 135/280 (48%), Positives = 183/280 (65%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508
Query: 242 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVF 281
LA+ALGD P+ ++L DND SAV+
Sbjct: 509 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVY 548
|
|
| UNIPROTKB|I3LMN3 GLYR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 135/280 (48%), Positives = 183/280 (65%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 255 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 314
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 315 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 374
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 375 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 434
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 435 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 494
Query: 242 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVF 281
LA+ALGD P+ ++L DND SAV+
Sbjct: 495 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVY 534
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P0ABQ3 | GARR_ECOL6 | 1, ., 1, ., 1, ., 6, 0 | 0.3178 | 0.9621 | 0.9523 | yes | no |
| Q9LSV0 | GLYR1_ARATH | 1, ., 1, ., 1, ., n, 1, 1 | 0.8035 | 0.9793 | 0.9861 | yes | no |
| O34969 | YFJR_BACSU | 1, ., 1, ., -, ., - | 0.3205 | 0.9759 | 0.9930 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00013336001 | SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_463, whole genome shotgun sequence); (291 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 291 | |||
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 2e-90 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 2e-54 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 2e-52 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 2e-47 | |
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 8e-41 | |
| PRK15461 | 296 | PRK15461, PRK15461, NADH-dependent gamma-hydroxybu | 1e-37 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 5e-35 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 3e-32 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 2e-26 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 2e-12 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 7e-12 | |
| TIGR00873 | 467 | TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( | 5e-11 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 2e-10 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 2e-09 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 3e-09 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 9e-09 | |
| PLN02350 | 493 | PLN02350, PLN02350, phosphogluconate dehydrogenase | 1e-07 | |
| PRK09287 | 459 | PRK09287, PRK09287, 6-phosphogluconate dehydrogena | 5e-05 | |
| cd12164 | 306 | cd12164, GDH_like_2, Putative glycerate dehydrogen | 7e-05 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 269 bits (691), Expect = 2e-90
Identities = 112/286 (39%), Positives = 170/286 (59%), Gaps = 1/286 (0%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTI 59
M++ F+GLGIMG ++ NLL+ G +VTV+NRT K + L A GATV SPAE + +
Sbjct: 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADV 60
Query: 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119
I ML D AA +V+F + G+LE + PG IDMST+ ET+ +++ A+ +KG FL+AP
Sbjct: 61 VITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAP 120
Query: 120 VSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC 179
VSG A G L I+ G+ ++ A L +GK +G VG G KL N+++
Sbjct: 121 VSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAG 180
Query: 180 MMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 239
+ +E L LAEK+GLDP +L+V+ G + + + GP ML+ +++P F + KD
Sbjct: 181 NIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKD 240
Query: 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
+ LAL E +P+ A A E + KA + G G+ DFSA+ ++++
Sbjct: 241 LGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286
|
Length = 286 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 2e-54
Identities = 91/281 (32%), Positives = 149/281 (53%), Gaps = 2/281 (0%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M+VGF+GLGIMGK +S NLL+ G+ + V++R E++A GA + V ++C +
Sbjct: 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVI 62
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML + V + G++E PG IDMS++ S +I+ A+ +KG L+APV
Sbjct: 63 ITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPV 122
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SG + A G L ++ G+KA++D+ + + G++G G KL +I+
Sbjct: 123 SGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALN 182
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA-NPMFKGKGPTMLQSNYAPAFPLKHQQKD 239
+ SE LVLA K+G++P + + GG+A + + K P ++ N+ P F + KD
Sbjct: 183 IAAMSEALVLATKAGVNPDLVYQAIR-GGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKD 241
Query: 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAV 280
+ AL +P+ AA E + ++ GLG D SA+
Sbjct: 242 LANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSAL 282
|
Length = 296 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 2e-52
Identities = 89/286 (31%), Positives = 147/286 (51%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
+VGF+GLGIMG +S+NL + G+++ V DEL+A GA + +V ++ +
Sbjct: 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIF 60
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
M+ D V F + G++E PGK +DMS++ S + ++A+ KG +L+APVS
Sbjct: 61 TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVS 120
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G + A G L I+ G++A++D +GK +G G+G K+ +I+ +
Sbjct: 121 GGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNI 180
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
SE LV A K+G+DP + L G + + + KG ++ + P F + QKD+
Sbjct: 181 EAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN 240
Query: 242 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287
LAL ++P A E F R+ G G D SA+ + ++ L
Sbjct: 241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELL 286
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-47
Identities = 60/158 (37%), Positives = 94/158 (59%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
++GF+GLG+MG +++NLL+ G+ VTV+NRT K +ELVA GA SPAE + +
Sbjct: 1 AKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVV 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I M+ AA +V+ + G+L + PG ID ST D + + + ++ + KG HFL+APV
Sbjct: 61 ITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAEKGIHFLDAPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF 158
SG ++ AE G L I+ G++ ++ L +G
Sbjct: 121 SGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGACVT 158
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 8e-41
Identities = 87/289 (30%), Positives = 131/289 (45%), Gaps = 9/289 (3%)
Query: 5 FLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML 64
F+GLG MG ++ NLL+ G V V++ +E VA GA SPAE + I ML
Sbjct: 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITML 60
Query: 65 ADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK 124
+SV G+L ++ G ID ST+D +++ K++ + G F++APVSG
Sbjct: 61 PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGV 120
Query: 125 QPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTF 184
A G L + G + A L +G+ G+ G G K+ NM++G M
Sbjct: 121 GGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGT 180
Query: 185 SEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMFKGKGPTMLQSN-YAPAFPLKHQ 236
+E + L EK GLDP+ L ++ + NP G P SN Y F
Sbjct: 181 AEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNP-VPGVMPQAPASNGYQGGFGTALM 239
Query: 237 QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
KD+ LA P+ A A + + G G DFS+V ++++
Sbjct: 240 LKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLLR 288
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 1e-37
Identities = 93/291 (31%), Positives = 144/291 (49%), Gaps = 15/291 (5%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
+ F+GLG MG ++ NLL+ G ++ V++ D LV GAT SPA+ I
Sbjct: 4 IAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVIT 63
Query: 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
ML + SV+F + GV E + IDMST+ + K+ + +KG ++ PV
Sbjct: 64 MLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR 123
Query: 123 SKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMN 182
+ A TG L++L+ G + A L +G + G G G ++KL +N M +N
Sbjct: 124 TSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRVKL-INNYMSIALN 182
Query: 183 TFS-EGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKG-------PTMLQSNYAPAFPLK 234
S E VL E GL L V+ G A GKG +L+ + +PAF +
Sbjct: 183 ALSAEAAVLCEALGLSFDVALKVMS-GTAA-----GKGHFTTTWPNKVLKGDLSPAFMID 236
Query: 235 HQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
KD+ +AL + ++ V MP+ AA+ E + +AR+ G G D+SA+ E V+
Sbjct: 237 LAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVR 287
|
Length = 296 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 5e-35
Identities = 82/285 (28%), Positives = 143/285 (50%), Gaps = 1/285 (0%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M++GF+GLGIMG +++NL R G ++ V DEL++ GA + +V + I
Sbjct: 1 MKLGFIGLGIMGTPMAINLARAGHQLHV-TTIGPVADELLSLGAVSVETARQVTEASDII 59
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
M+ D V+F + G + GK +DMS++ + + +R + GG +L+APV
Sbjct: 60 FIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPV 119
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SG + A G L I+ G++A+++ ++GK +G G+G K+ +I+
Sbjct: 120 SGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALN 179
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
+ SE L+ A K+G DP + L G ++ + + G M++ + P F + QKD+
Sbjct: 180 IEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL 239
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
LAL A+++P A E F + G D SA+ + ++
Sbjct: 240 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALE 284
|
Length = 292 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-32
Identities = 81/291 (27%), Positives = 146/291 (50%), Gaps = 9/291 (3%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVT---VWNRTLSKCDELVAHGATVGGSPAEVIKKCTI 59
+GF+GLG MG ++ +LL++ F V V+ TL + + G G SPAEV K +
Sbjct: 327 IGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENA---GGLAGNSPAEVAKDVDV 383
Query: 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS--KGGHFLE 117
+ M+A+ A +V+F G + + G + STV I++ R + + + ++
Sbjct: 384 LVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD 443
Query: 118 APVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLVVNMI 176
APVSG + A G L I+++G A S L+ + +K + + G G G+ +K+V ++
Sbjct: 444 APVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLL 503
Query: 177 MGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQ 236
G + + +E + + GL+ R L D++ G + MF+ + P ML ++Y P L
Sbjct: 504 AGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIF 563
Query: 237 QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287
KD+ + G + + ++ A++ F + G G D +AV +V + L
Sbjct: 564 VKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYETL 614
|
Length = 1378 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 65/284 (22%), Positives = 132/284 (46%), Gaps = 3/284 (1%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
VGF+GL + ++ +LLR+GFKV + + ++ G SPAE K +
Sbjct: 7 VGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVV 66
Query: 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG--HFLEAPV 120
+L+ P V F G + + G + ST+ K+ + +T + ++A V
Sbjct: 67 VLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYV 126
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLVVNMIMGC 179
S G+L+I+++G A L+ + +K + GE+G G+K+K+V ++ G
Sbjct: 127 SKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGI 186
Query: 180 MMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 239
+ +E + L ++G+ P + D++ ++ +FK P +L+ +Y L ++
Sbjct: 187 HLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQN 246
Query: 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEV 283
+ + L + +P+ A A++ S GD+ +++ +V
Sbjct: 247 LGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKV 290
|
Length = 1378 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-12
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 12/204 (5%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCT-- 58
M++G +GLG MG + LL G V ++ + +EL GAT S E++ K +
Sbjct: 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAP 60
Query: 59 -ITIGMLADPAAAL--SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115
I M+ PA + +V+ D +L G ID +++ S++ ++ + KG HF
Sbjct: 61 RIVWLMV--PAGDITDAVIDDLAPLLS---AGDIVIDGGNSNYKDSLRRAKLLAEKGIHF 115
Query: 116 LEAPVSGSKQPAETGQLVILSAGEKAL--YDEAISALNVIGKKAFFLGEVGNGAKMKLVV 173
L+ SG AE G +++ E+A+ + AL + G G+G +K+V
Sbjct: 116 LDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVH 175
Query: 174 NMIMGCMMNTFSEGLVLAEKSGLD 197
N I MM +EG L + S D
Sbjct: 176 NGIEYGMMQAIAEGFELLKNSPFD 199
|
Length = 300 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 7e-12
Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 24/221 (10%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCT-- 58
M++G +GLG MG ++ LLR G +V ++R + L GAT S E++ K
Sbjct: 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAP 60
Query: 59 -ITIGMLADPAAAL--SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115
+ M+ PA + + + + +L PG ID ++ I+ + + KG HF
Sbjct: 61 RVVWLMV--PAGEITDATIDELAPLLS---PGDIVIDGGNSYYKDDIRRAELLAEKGIHF 115
Query: 116 LEAPVSGSKQPAETGQ-LVILSAGEKALYDEA---ISALNVIGKKAF-FLGEVGNGAKMK 170
++ SG E G L+I G+K + AL + + G VG G +K
Sbjct: 116 VDVGTSGGVWGLERGYCLMI--GGDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVK 173
Query: 171 LVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 211
+V N I MM ++EG L E S D LDL +A
Sbjct: 174 MVHNGIEYGMMQAYAEGFELLEASRFD-------LDLAAVA 207
|
Length = 301 |
| >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-11
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 24/192 (12%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGS--PAEVIKKCTI 59
++G +GL +MG +++N+ +GF V+V+NRT K DE +A G A I++
Sbjct: 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLA-EHAKGKKIVGAYSIEE--- 56
Query: 60 TIGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRAITS 110
+ L P + +V K G V+ Q+ P G ID + + + + + +
Sbjct: 57 FVQSLERPRKIMLMV--KAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA 114
Query: 111 KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKA------FFLGEVG 164
KG F+ + VSG ++ A G I+ G + I K ++G G
Sbjct: 115 KGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDG 173
Query: 165 NGAKMKLVVNMI 176
G +K+V N I
Sbjct: 174 AGHYVKMVHNGI 185
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-10
Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 13/204 (6%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTI- 59
M++G +GLG MG I L + G ++ + T + E+ ++ +
Sbjct: 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAP 60
Query: 60 TIGMLADPAAALSVVFDKGGVLEQICP----GKGYIDMSTVDHETSIKISRAITSKGGHF 115
+ + P + VLE++ P G ID ++ S++ + + KG H
Sbjct: 61 RVVWVMVPHGIVD------AVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHL 114
Query: 116 LEAPVSGSKQPAETGQLVILSAGEKAL--YDEAISALNVIGKKAFFLGEVGNGAKMKLVV 173
L+ SG E G ++ +A + + + + + G G+G +K+V
Sbjct: 115 LDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVH 174
Query: 174 NMIMGCMMNTFSEGLVLAEKSGLD 197
N I MM +EG + S D
Sbjct: 175 NGIEYGMMAAIAEGFEILRNSQFD 198
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-09
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 19/204 (9%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++G +GL +MG+ +++N+ GFK++V+NRT K +E V A G + + +
Sbjct: 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVK-KAKEGNTRVKGYHTLEELV 61
Query: 62 GMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRAITSKG 112
L P + ++ K G ++ + P G ID + + + + KG
Sbjct: 62 NSLKKPRKVILLI--KAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG 119
Query: 113 GHFLEAPVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKKAFFLGEVGNG 166
+L VSG ++ A G ++ G K YD E SA ++G +G
Sbjct: 120 ILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSG 178
Query: 167 AKMKLVVNMIMGCMMNTFSEGLVL 190
+K+V N I M SE L
Sbjct: 179 HYVKMVHNGIEYGDMQLISESYKL 202
|
Length = 470 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 24/193 (12%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTI 59
++G +GL +MG +++N+ +G+ V V+NRT K DE +A PA I++
Sbjct: 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEE--- 60
Query: 60 TIGMLADPAAALSVVFDKGG-----VLEQICP--GKG--YIDMSTVDHETSIKISRAITS 110
+ L P L +V K G V+EQ+ P KG ID ++ +I+ ++ ++
Sbjct: 61 FVASLEKPRKILLMV--KAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSE 118
Query: 111 KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKK-AFFLGEV 163
KG F+ VSG ++ A G I+ G+K Y+ I+A V G+ ++G
Sbjct: 119 KGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILTKIAA-KVDGEPCCTWIGPD 176
Query: 164 GNGAKMKLVVNMI 176
G G +K+V N I
Sbjct: 177 GAGHFVKMVHNGI 189
|
Length = 473 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 9e-09
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 12/204 (5%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKC--- 57
M++G +GLG MG ++ L +G +V ++ D G T S E++ K
Sbjct: 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAP 60
Query: 58 -TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116
TI + M+ SV+ D +L PG +D ++ ++ + + +G H++
Sbjct: 61 RTIWV-MVPAGEVTESVIKDLYPLLS---PGDIVVDGGNSRYKDDLRRAEELAERGIHYV 116
Query: 117 EAPVSGSKQPAETGQLVILSAGEKALYDE---AISALNVIGKKAFFLGEVGNGAKMKLVV 173
+ SG G ++ G+K +YD AL G G VG+G +K+V
Sbjct: 117 DCGTSGGVWGLRNG-YCLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVH 175
Query: 174 NMIMGCMMNTFSEGLVLAEKSGLD 197
N I MM ++EGL L +KS D
Sbjct: 176 NGIEYGMMQAYAEGLELLDKSDFD 199
|
Length = 299 |
| >gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 48/197 (24%), Positives = 79/197 (40%), Gaps = 32/197 (16%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG-------SPAEVI 54
+G GL +MG+ +++N+ GF ++V+NRT SK DE V G P + +
Sbjct: 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFV 67
Query: 55 K-----KCTITIGMLADPA----AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKIS 105
+ I + P ALS + G + ID +E + +
Sbjct: 68 LSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCI---------IDGGNEWYENTERRI 118
Query: 106 RAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKKAFF 159
+ KG +L VSG ++ A G ++ G Y E ++A G +
Sbjct: 119 KEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEKVAAQVDDGPCVTY 177
Query: 160 LGEVGNGAKMKLVVNMI 176
+G G G +K+V N I
Sbjct: 178 IGPGGAGNFVKMVHNGI 194
|
Length = 493 |
| >gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 5e-05
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 11 MGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41
MGK +++N+ +G+ V V+NRT K DE +A
Sbjct: 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLA 31
|
Length = 459 |
| >gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 7e-05
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32
VG LGLG +G A++ L GF V+ W+R+
Sbjct: 133 RRVGVLGLGELGAAVARRLAALGFPVSGWSRS 164
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 291 | |||
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 100.0 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.98 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.97 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.97 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.97 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.97 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.97 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.95 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.95 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.95 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.94 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.93 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.93 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.92 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.92 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.92 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.91 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.9 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.9 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.9 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.89 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.89 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.89 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.89 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.88 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.88 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.88 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.88 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.87 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.87 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.87 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.85 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.85 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.84 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.84 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.84 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.84 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.84 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.84 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.83 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.83 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.83 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.81 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.8 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.79 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.79 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.77 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.76 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.76 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.76 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.76 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.76 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.74 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.73 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.73 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.72 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.72 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.71 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.71 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.7 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.69 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.69 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.66 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.65 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.65 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.65 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.63 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.62 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.61 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.6 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.59 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.57 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.56 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.55 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.54 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.5 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.5 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.49 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.48 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.47 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.45 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 99.43 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.42 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.41 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 99.4 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 99.38 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.31 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 99.28 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.28 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.27 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 99.26 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.25 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.24 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.2 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 99.17 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 99.17 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 99.15 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 99.13 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 99.13 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 99.13 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.09 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 99.06 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 99.03 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 99.0 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.98 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.92 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.91 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.91 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.9 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.89 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.88 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.87 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.86 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.86 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.84 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.81 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 98.79 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.79 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.77 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.74 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.73 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.72 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.7 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.69 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.69 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.69 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.66 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.65 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 98.65 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.64 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.63 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.62 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.61 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.58 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.57 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 98.56 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 98.53 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.52 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 98.52 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 98.48 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.48 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.45 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.45 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 98.45 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.43 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.41 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.4 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.38 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.38 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.37 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.37 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 98.37 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 98.36 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 98.35 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 98.35 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 98.35 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 98.35 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 98.33 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 98.33 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 98.33 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 98.3 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.29 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.29 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.29 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 98.25 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 98.24 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 98.23 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 98.23 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 98.22 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 98.2 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 98.2 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 98.18 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 98.18 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 98.18 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.17 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 98.17 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 98.17 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 98.16 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.15 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 98.14 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.12 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 98.12 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 98.11 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 98.1 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 98.1 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.09 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.09 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 98.09 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 98.08 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 98.08 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 98.06 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.05 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 98.05 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 98.05 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 98.04 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 98.03 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 98.03 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 98.01 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 98.0 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 98.0 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 98.0 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 98.0 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.99 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.99 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.98 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.98 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 97.97 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.95 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.92 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.91 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.9 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.89 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.88 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.88 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.88 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.86 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.86 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 97.78 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 97.78 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.77 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.76 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.76 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.75 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.75 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.73 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 97.72 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.71 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.71 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.7 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.69 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.67 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.65 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.63 | |
| PF08546 | 125 | ApbA_C: Ketopantoate reductase PanE/ApbA C termina | 97.61 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.6 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.6 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.59 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.58 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 97.58 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.57 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 97.57 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.55 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.55 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.55 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.55 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.54 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.53 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.52 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.52 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 97.51 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.5 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 97.5 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.49 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 97.47 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.47 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.47 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.46 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.46 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 97.45 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.44 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.44 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.43 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.43 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.42 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.41 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.41 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 97.4 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.39 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.37 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.36 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.36 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.35 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 97.34 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.29 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.27 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 97.26 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.26 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.25 | |
| PLN00106 | 323 | malate dehydrogenase | 97.25 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 97.25 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.24 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.23 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 97.22 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 97.21 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.21 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.2 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.19 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.19 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.18 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.18 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 97.18 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.17 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 97.17 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.15 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 97.15 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.15 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.12 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 97.12 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.12 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.11 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 97.11 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 97.1 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 97.1 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.09 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.08 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.07 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.07 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.07 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 97.05 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 97.05 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 97.04 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 97.04 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 97.02 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 97.02 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.0 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.0 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.99 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 96.98 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 96.98 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 96.98 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 96.98 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.97 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.96 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 96.96 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.96 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.95 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.95 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 96.94 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 96.94 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.94 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.94 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 96.93 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.93 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.91 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 96.88 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 96.88 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.86 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.83 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.82 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 96.82 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 96.8 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.79 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.79 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 96.78 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.77 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.75 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 96.73 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.72 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 96.7 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.7 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.7 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.68 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 96.68 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.67 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.66 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 96.66 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.62 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.62 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.59 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.57 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 96.56 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 96.55 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 96.54 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.54 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.52 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 96.52 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 96.51 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.49 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 96.48 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.48 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 96.44 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 96.44 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.43 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 96.43 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 96.42 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.41 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.41 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 96.4 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.38 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.33 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.33 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.32 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.31 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 96.29 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 96.29 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.28 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.27 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 96.25 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.24 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 96.23 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 96.2 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 96.17 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 96.16 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 96.14 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 96.12 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 96.11 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 96.11 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 96.11 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 96.1 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 96.09 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.08 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 96.08 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 96.07 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.07 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 96.06 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 96.05 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 96.04 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.04 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 96.03 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.01 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 96.0 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 95.99 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 95.98 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 95.94 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 95.94 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 95.92 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 95.91 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 95.9 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.89 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 95.88 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 95.88 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.87 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 95.86 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 95.86 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 95.86 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 95.85 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 95.85 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 95.85 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 95.84 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.82 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 95.82 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 95.8 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 95.76 | |
| COG3804 | 350 | Uncharacterized conserved protein related to dihyd | 95.76 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 95.76 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 95.76 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 95.76 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 95.74 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 95.73 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 95.72 | |
| PRK05868 | 372 | hypothetical protein; Validated | 95.72 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 95.72 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 95.72 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 95.67 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 95.67 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 95.66 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 95.66 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.65 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 95.65 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.63 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 95.6 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 95.6 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.59 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 95.59 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 95.57 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 95.55 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 95.54 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 95.51 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 95.51 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 95.5 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.5 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 95.5 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 95.5 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 95.48 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 95.48 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 95.46 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 95.45 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 95.45 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 95.45 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 95.44 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 95.44 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 95.43 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.41 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 95.4 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 95.39 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.39 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 95.39 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 95.37 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.36 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 95.34 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.31 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 95.31 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 95.29 |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-57 Score=374.78 Aligned_cols=285 Identities=39% Similarity=0.663 Sum_probs=277.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch-hHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+|.||..|+.+|.++||+|++|||++++ .+.+.+.|.....++.|++..+|+||+|||++.++++|+|++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 79999999999999999999999999999999999 66666779999999999999999999999999999999999889
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEe
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF 159 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~ 159 (291)
+.+.+++++++||+||..|...+++.+.+.+.|..|+|+|++|+...+..|++++++||+++.+++++++|+.+|.++++
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~ 160 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH 160 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHH
Q 022834 160 LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 239 (291)
Q Consensus 160 ~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d 239 (291)
+|+.|.++.+|+++|++...+++.++|++.++++.|+|++.++++++.+...||+++++.+++.+++|+|+|.+..|.||
T Consensus 161 ~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KD 240 (286)
T COG2084 161 VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKD 240 (286)
T ss_pred ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHH
Q 022834 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285 (291)
Q Consensus 240 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 285 (291)
++++.+.+++.++++|+...+.++++.+.+.|++.+|++++++.|+
T Consensus 241 l~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 241 LGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 9999999999999999999999999999999999999999999874
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-54 Score=348.15 Aligned_cols=289 Identities=43% Similarity=0.758 Sum_probs=281.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..|+.+|.++||+|++|||+.++++.+.+.|..+.+++.|+++++|+||.+||++.++++++++..++
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gv 115 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGV 115 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccccCCCcEE-EEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEe
Q 022834 81 LEQICPGKGY-IDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF 159 (291)
Q Consensus 81 ~~~l~~~~~v-v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~ 159 (291)
+..++++... ||.||+.|.+..++.+.+..++..|+|+|++|+...++.|+++++++|+++.+++..++|+.+|+++++
T Consensus 116 l~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~ 195 (327)
T KOG0409|consen 116 LSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVF 195 (327)
T ss_pred eeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEE
Confidence 8888888777 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHH
Q 022834 160 LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 239 (291)
Q Consensus 160 ~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d 239 (291)
+|..|.+..+|+++|++....+..++|++.++++.|+|...++++++.+.+.|+++.+..|.+.+++|.|+|++..|.||
T Consensus 196 ~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KD 275 (327)
T KOG0409|consen 196 LGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKD 275 (327)
T ss_pred ecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhhc
Q 022834 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR 289 (291)
Q Consensus 240 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~ 289 (291)
++++.+.+.+.+.|+|+....+++++...+.|+++.|++++++.++.++-
T Consensus 276 Lgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~ 325 (327)
T KOG0409|consen 276 LGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNG 325 (327)
T ss_pred HHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999887654
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=344.13 Aligned_cols=287 Identities=29% Similarity=0.498 Sum_probs=271.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..|+++|.++||+|++|||++. .+.+.+.|.....++.++++++|+||+|+|++.++++++++..++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 8999999999999999999999999999999874 577777888888899999999999999999998999999765567
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.+.+++++||+||..|.+.+++.+.+.++|..|+++|++|++..+..|++.++++|+++.+++++++|+.+|.+++++
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~ 159 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV 159 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence 77777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 240 (291)
|+.|.+..+|+++|++....+.+++|++.++++.|+|++++++++..+.+.|++++.+.+++..++|.++|++..+.||+
T Consensus 160 G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl 239 (292)
T PRK15059 160 GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL 239 (292)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhh
Q 022834 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 288 (291)
Q Consensus 241 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 288 (291)
+++.+++++.|+++|+.+++.++++.+.+.|++++|++++++++++..
T Consensus 240 ~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~ 287 (292)
T PRK15059 240 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMA 287 (292)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998743
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-49 Score=337.30 Aligned_cols=286 Identities=30% Similarity=0.475 Sum_probs=269.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+||+|||+|.||..|+..|+++||+|++|||++++.+.+.+.|.....++.++++++|+||+|+|++..++.++++.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 38999999999999999999999999999999999999998898888899999999999999999988899998765567
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.+++++++|++||+.|.+.+++.+.+.++++.|+|+|++|++..+..|+++++++|+++.+++++++|+.+|.+++++
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~ 161 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA 161 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccccc-ccccCCCCCCcccccHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKD 239 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~d 239 (291)
++.|.+..+|+++|++...+..+++|++.++++.|+|++.+++++..+...++++....+ ++..++|.++|++..+.||
T Consensus 162 g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD 241 (296)
T PRK15461 162 GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKD 241 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhh
Confidence 999999999999999999999999999999999999999999999987767777766655 8889999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHh
Q 022834 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286 (291)
Q Consensus 240 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 286 (291)
++++.+.+++.|+++|+.+.+.+.++.+.+.|+|++|++++++++++
T Consensus 242 ~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 242 LGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-47 Score=324.04 Aligned_cols=280 Identities=29% Similarity=0.459 Sum_probs=262.8
Q ss_pred EEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcccccc
Q 022834 5 FLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQI 84 (291)
Q Consensus 5 iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l 84 (291)
|||+|.||.+|+..|.++||+|++|||++++.+.+.+.|.....++.++++++|+||+|+|++.++++++++.+++.+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999999999999999988888999999999999999999888999997766787788
Q ss_pred CCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEeeCCCC
Q 022834 85 CPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVG 164 (291)
Q Consensus 85 ~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~~~~~ 164 (291)
++++++|++|+..|.+.+++.+.+.++|+.|+++|++|++..+..|++.++++|+++.+++++++|+.+|.+++++++.|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g 160 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG 160 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccccc-------ccccCCCCCCcccccHH
Q 022834 165 NGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-------TMLQSNYAPAFPLKHQQ 237 (291)
Q Consensus 165 ~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~ 237 (291)
.+..+|+++|++....+.+++|++.++++.|++++.+++++..+.+.++++..+.+ .+..++|.++|++..+.
T Consensus 161 ~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 240 (288)
T TIGR01692 161 AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALML 240 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999988888877665543 23668999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 022834 238 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV 284 (291)
Q Consensus 238 ~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~ 284 (291)
||++++.+++++.|+++|+.+.+.++++.+.++|+|++|++++++++
T Consensus 241 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 241 KDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred hhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999876
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=322.15 Aligned_cols=287 Identities=31% Similarity=0.555 Sum_probs=270.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|++.|++|++|||++++.+.+.+.|....++++++++++|+||+|+|++.+++.+++..+++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 68999999999999999999999999999999999998888888888899999999999999999989999988655557
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.++++++++|+|+..|.+.+++.+.+.+.++.|+++|++|++..+..+.+.++++|+++.++.++++|+.+|.+++++
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~ 162 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT 162 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEe
Confidence 77778899999999999999999999998889999999999999988899988999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 240 (291)
++.|.+..+|+++|.+...++++++|++.++++.|++++++.+.+..+.+.+++++.+.+++..++|.++|+++.+.||+
T Consensus 163 g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl 242 (296)
T PRK11559 163 GDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 242 (296)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888889998888889899999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhh
Q 022834 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287 (291)
Q Consensus 241 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 287 (291)
+++.+++++.|+++|+++++.+.++.+.+.|+|++|++++++++++.
T Consensus 243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 289 (296)
T PRK11559 243 ANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKL 289 (296)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999764
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=320.22 Aligned_cols=287 Identities=31% Similarity=0.543 Sum_probs=269.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
||+|||+|.||..|+..|+++||+|++|||++++.+.+.+.|.....+..++++++|+||+|+|++.+++.+++..+++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 69999999999999999999999999999999999999988888888898999999999999999888999886554566
Q ss_pred cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEeeC
Q 022834 82 EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG 161 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~~ 161 (291)
+.++++++++++|+..|.+.+++.+.+.+.++.|+++|++|++.....+.+.++++|+++.+++++++|+.++.++++++
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g 160 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG 160 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence 67778999999999999999999999988899999999999998888898889999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHH
Q 022834 162 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241 (291)
Q Consensus 162 ~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 241 (291)
+.+.+..+|+++|++....+.+++|++.++++.|++++++.+++..+...+++++.+.+++..++|.++|++..+.||+.
T Consensus 161 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~ 240 (291)
T TIGR01505 161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN 240 (291)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888899988888999999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhh
Q 022834 242 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 288 (291)
Q Consensus 242 ~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 288 (291)
++.+++++.|+++|+.+++.++++.+.++|+|++|++++++++++.+
T Consensus 241 ~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~~ 287 (291)
T TIGR01505 241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELLA 287 (291)
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999997643
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=364.12 Aligned_cols=286 Identities=23% Similarity=0.364 Sum_probs=275.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
.||||||+|.||..|+.+|.++||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|++.++++++++.+++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~ 84 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGA 84 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999887788
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC--CcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceE
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG--GHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF 158 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~ 158 (291)
.+.+++++++||+||..|.+.+++.+.+.++| +.|+|+|++|++..+..|++++++||+++.+++++++|+.+|.+++
T Consensus 85 ~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~ 164 (1378)
T PLN02858 85 AKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY 164 (1378)
T ss_pred HhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence 88888999999999999999999999999998 8899999999999999999999999999999999999999999887
Q ss_pred e-eCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHH
Q 022834 159 F-LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ 237 (291)
Q Consensus 159 ~-~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (291)
+ +|+.|.+..+|+++|++...++++++|++.++++.|++++.++++++.+++.||+++++.+++..++|.++|++..+.
T Consensus 165 ~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~ 244 (1378)
T PLN02858 165 TFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLV 244 (1378)
T ss_pred EecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHH
Confidence 6 488999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHh
Q 022834 238 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286 (291)
Q Consensus 238 ~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 286 (291)
||++++.++|++.|+++|+.+.+.+.++.+.+.|+|++|++++++.+++
T Consensus 245 KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 245 QNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=352.06 Aligned_cols=286 Identities=27% Similarity=0.465 Sum_probs=272.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||.+|+.+|.++||+|++|||++++.+.+.+.|.....++.+++++||+||+|||++.++++++++..++
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~ 404 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGA 404 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhH
Confidence 48999999999999999999999999999999999999999898888899999999999999999999999999876677
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHh--cCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceE
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITS--KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF 158 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~ 158 (291)
.+.+.+++++|++||..|.+.+++.+.+.+ +|+.|+++|++|++..+..|+++++++|+++.+++++++|+.+|.+++
T Consensus 405 ~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~ 484 (1378)
T PLN02858 405 VSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLY 484 (1378)
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEE
Confidence 777889999999999999999999999988 899999999999999999999999999999999999999999999887
Q ss_pred ee-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHH
Q 022834 159 FL-GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ 237 (291)
Q Consensus 159 ~~-~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (291)
++ ++.|.+..+|+++|++...++++++|++.++++.|++++.++++++.+.+.||+++++.++++.++|.++|++..+.
T Consensus 485 ~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~ 564 (1378)
T PLN02858 485 VIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFV 564 (1378)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHH
Confidence 74 66999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHh
Q 022834 238 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286 (291)
Q Consensus 238 ~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 286 (291)
||++++.+.+++.|+++|+.+++.+++..+.+.|+|+.|++++++++++
T Consensus 565 KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 565 KDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999975
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=295.88 Aligned_cols=279 Identities=22% Similarity=0.294 Sum_probs=254.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhh---CCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---~dvvii~vp~~~~~~~v~~~~ 77 (291)
|||+|||+|.||..|+.+|.++|++|++|||++++.+.+.+.|.....++++++++ +|+||+|+|++.++++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~--- 77 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI--- 77 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence 89999999999999999999999999999999999999988898888899998876 699999999987899998
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhcc--
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK-- 155 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-- 155 (291)
+++.+.+++++++||+|++.|.+..++.+.+.+.++.|+|+|++|++..+..|. +++++|+++.+++++++|+.+|.
T Consensus 78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (299)
T PRK12490 78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEG 156 (299)
T ss_pred HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcC
Confidence 677788888999999999999999999999989999999999999999999997 68999999999999999999997
Q ss_pred -ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhc-CCCcccccccccccccCCCCCCc
Q 022834 156 -KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG--LDPRTLLDVLDLG-GIANPMFKGKGPTMLQSNYAPAF 231 (291)
Q Consensus 156 -~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g--~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 231 (291)
+++++++.|.+..+|+++|++....+.+++|++.++++.| +|++.++++++.+ ...|++++...+.+.++++ .+
T Consensus 157 ~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~~ 234 (299)
T PRK12490 157 PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--LA 234 (299)
T ss_pred CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--hh
Confidence 7899999999999999999999999999999999999999 9999999999964 4778888887777765443 24
Q ss_pred ccccHHHHH---HHHHHHHhhcCCCchHHHHHH-HHHHHHHHCCCCCCcHHHHHHHHH
Q 022834 232 PLKHQQKDM---RLALALGDENAVSMPIAAAAN-EAFKKARSLGLGDNDFSAVFEVVK 285 (291)
Q Consensus 232 ~~~~~~~d~---~~~~~~a~~~g~~~p~~~~~~-~~~~~~~~~g~~~~d~~~~~~~~~ 285 (291)
.+..+.||+ +++++.+++.|+|+|++.++. .++....++|.|..|.+++.++|-
T Consensus 235 ~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 235 GIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred hhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 578899998 799999999999999999985 777878888888999999998873
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=302.20 Aligned_cols=263 Identities=22% Similarity=0.315 Sum_probs=239.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC----CCc---ccCCHHHHHhh---CCEEEEecCCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GAT---VGGSPAEVIKK---CTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g~~---~~~~~~~~~~~---~dvvii~vp~~~~~ 70 (291)
++|||||+|.||..|+.+|+++||+|++|||++++.+.+.+. |.. .+.+++|+++. +|+||+|||++..+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 489999999999999999999999999999999999988763 543 67799998876 99999999999999
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHH
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISAL 150 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll 150 (291)
++|+ +++.+.+.+|+++||+||..|.+.+++.+.+.++|+.|+++|++|++..+..|+ ++++||+++.+++++++|
T Consensus 87 ~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL 162 (493)
T PLN02350 87 DQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDIL 162 (493)
T ss_pred HHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHH
Confidence 9999 788888889999999999999999999999999999999999999999999998 799999999999999999
Q ss_pred HHhcc------ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhcCCCccccccccc
Q 022834 151 NVIGK------KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDV---LDLGGIANPMFKGKGP 220 (291)
Q Consensus 151 ~~~g~------~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~-~g~~~~~~~~~---~~~~~~~s~~~~~~~~ 220 (291)
+.++. .++++|+.|++..+|+++|.+...++++++|++.++++ .|++++++.++ ++.+...|++++...+
T Consensus 163 ~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~ 242 (493)
T PLN02350 163 EKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITAD 242 (493)
T ss_pred HHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHH
Confidence 99995 48999999999999999999999999999999999999 59999999998 4577788889888888
Q ss_pred ccccCC-CCCCcccccHHHHHH------HHHHHHhhcCCCchH-HHHHHHHHHHH
Q 022834 221 TMLQSN-YAPAFPLKHQQKDMR------LALALGDENAVSMPI-AAAANEAFKKA 267 (291)
Q Consensus 221 ~~~~~~-~~~~~~~~~~~~d~~------~~~~~a~~~g~~~p~-~~~~~~~~~~~ 267 (291)
.+...+ +.++|.++.+.||++ +..+.+.+.|+|+|+ .+++.+.+...
T Consensus 243 ~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~ 297 (493)
T PLN02350 243 IFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSG 297 (493)
T ss_pred HHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhc
Confidence 777664 887899999999999 899999999999999 77766666543
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=281.42 Aligned_cols=278 Identities=23% Similarity=0.322 Sum_probs=247.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhh---CCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---~dvvii~vp~~~~~~~v~~~~ 77 (291)
|||+|||+|.||..++.+|.++||+|++|||++++.+.+.+.|+...++++++++. +|+||+|+|++..+++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~--- 77 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI--- 77 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence 89999999999999999999999999999999999999988899998899998875 699999999877889888
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhcc--
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK-- 155 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-- 155 (291)
+++.+.+++++++|++|++.|....++.+.+.+.|+.|+|+|++|++..+..|. +++++|+++.+++++++|+.++.
T Consensus 78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (301)
T PRK09599 78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRA 156 (301)
T ss_pred HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccc
Confidence 677778888999999999999999999999999999999999999999999885 78999999999999999999998
Q ss_pred --ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcC-CCcccccccccccccCCCCCC
Q 022834 156 --KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK--SGLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPA 230 (291)
Q Consensus 156 --~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~--~g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~ 230 (291)
+++++|+.|.+..+|+++|.+....+..++|++.++++ .|+|++.++++++.+. ..|++++...+.+.+ ++ .
T Consensus 157 ~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~-~~--~ 233 (301)
T PRK09599 157 EDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAE-DP--K 233 (301)
T ss_pred cCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhc-CC--C
Confidence 78999999999999999999999999999999999999 9999999999999764 577888877666633 32 2
Q ss_pred cc-cccHHHH---HHHHHHHHhhcCCCchHHHH-HHHHHHHHHHCCCCCCcHHHHHHHHH
Q 022834 231 FP-LKHQQKD---MRLALALGDENAVSMPIAAA-ANEAFKKARSLGLGDNDFSAVFEVVK 285 (291)
Q Consensus 231 ~~-~~~~~~d---~~~~~~~a~~~g~~~p~~~~-~~~~~~~~~~~g~~~~d~~~~~~~~~ 285 (291)
+. +..+.|| ++++...+.+.++++|.+.+ +...+....+.|.+..|.+++.++|-
T Consensus 234 ~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg 293 (301)
T PRK09599 234 LDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFG 293 (301)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcC
Confidence 22 2234555 58899999999999999999 44457778888999999999999874
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=258.13 Aligned_cols=278 Identities=19% Similarity=0.237 Sum_probs=235.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHH---hhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI---KKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|||+|||+|.||..|+.+|.++||+|.+|||++++++.+.+.|.....++.++. .++|+||+|+|.+ .+++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~--- 76 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL--- 76 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence 899999999999999999999999999999999999999988877777877755 3579999999887 899999
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhcc--
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK-- 155 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-- 155 (291)
+++.+.++++++|||+|++.|....+..+.+.+.|++|+++|++|++..+..| ..++++|+++.++.++++|+.++.
T Consensus 77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~ 155 (298)
T TIGR00872 77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEE 155 (298)
T ss_pred HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcC
Confidence 78888888999999999999999999988888899999999999999999988 578999999999999999999986
Q ss_pred -ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CCcccccccccccccCCCCCCc
Q 022834 156 -KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS--GLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAF 231 (291)
Q Consensus 156 -~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~--g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~ 231 (291)
.++++++.|.+..+|+++|.+....+..++|++.++++. |++++++.++++.+. ..|++++...+.+.+.+..+.+
T Consensus 156 ~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~ 235 (298)
T TIGR00872 156 QGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF 235 (298)
T ss_pred CCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHH
Confidence 578999999999999999999999999999999999998 569999999999875 5888888776666555544443
Q ss_pred ccc-cHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHh
Q 022834 232 PLK-HQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286 (291)
Q Consensus 232 ~~~-~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 286 (291)
... ...+|.+.++..+.+.|+|+|.+.+ .++.+.... ..+.-...+++.+++
T Consensus 236 ~~~~~~~~~~r~~v~~a~~~g~p~P~~~~--al~~~~~~~-~~~~~~~~~~~~~r~ 288 (298)
T TIGR00872 236 SGRVSDSGEGRWTVIAAIDLGVPAPVIAT--SLQSRFASR-DLDDFANKVLAALRK 288 (298)
T ss_pred HHHHHhhccHHHHHHHHHHhCCCHHHHHH--HHHHHHHhC-CCCCcHHHHHHHHHH
Confidence 322 2566678999999999999999998 344444433 122233446666554
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=263.66 Aligned_cols=254 Identities=22% Similarity=0.308 Sum_probs=219.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC----C--CcccCCHHHHHh---hCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIK---KCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~---~~dvvii~vp~~~~~~ 71 (291)
++|||||+|.||.+||.+|+++||+|++|||++++.+.+.+. | +..+.+++++++ ++|+||+++|.+..++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 479999999999999999999999999999999999888764 4 346778999886 4899999999999999
Q ss_pred HHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHH
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALN 151 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~ 151 (291)
+++ +++.+.+.++++|||++|+.+....+..+.+.++|+.|+++|++|++..+..|+ .+++||+++.+++++++|+
T Consensus 82 ~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~ 157 (470)
T PTZ00142 82 ETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILE 157 (470)
T ss_pred HHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHH
Confidence 999 788999999999999999999999999999999999999999999999999998 7999999999999999999
Q ss_pred Hhccc------eEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHh---hcCCCcccccccccc
Q 022834 152 VIGKK------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPRTLLDVLD---LGGIANPMFKGKGPT 221 (291)
Q Consensus 152 ~~g~~------~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~-~~g~~~~~~~~~~~---~~~~~s~~~~~~~~~ 221 (291)
.++.+ +.++|+.|++..+|+++|.+...++++++|++.+++ +.|++++++.+++. .+...|++++.....
T Consensus 158 ~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~ 237 (470)
T PTZ00142 158 KCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKI 237 (470)
T ss_pred HHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 99987 789999999999999999999999999999999998 79999999998884 666778888766555
Q ss_pred cccCCCCC-CcccccHHHH-------HHHHHHHHhhcCCCchHHHH
Q 022834 222 MLQSNYAP-AFPLKHQQKD-------MRLALALGDENAVSMPIAAA 259 (291)
Q Consensus 222 ~~~~~~~~-~~~~~~~~~d-------~~~~~~~a~~~g~~~p~~~~ 259 (291)
+...+... ++-++ ...| -+...+.|-+.|+|.|++..
T Consensus 238 ~~~~d~~~~~~~l~-~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~ 282 (470)
T PTZ00142 238 LAKKDDLGEEHLVD-KILDIAGSKGTGKWTVQEALERGIPVPTMAA 282 (470)
T ss_pred hhcccccCCCcchh-hhcCcccCCchHHhHHHHHHHcCCCchHHHH
Confidence 54443221 11111 1111 25778889999999999766
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=257.41 Aligned_cols=253 Identities=21% Similarity=0.308 Sum_probs=217.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-----CCcccCCHHHHHh---hCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIK---KCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~---~~dvvii~vp~~~~~~~v 73 (291)
+|||||+|.||.+|+.+|+++||+|++|||++++.+.+.+. ++....++.++++ .+|+||+|+|.+..++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 58999999999999999999999999999999999998865 2556678888764 589999999998999999
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHh
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVI 153 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~ 153 (291)
+ +++.+.+.++++|||+||+.+....+..+.+.++|+.|+++|++|++..+..|. .+++||+++.+++++++|+.+
T Consensus 81 i---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~i 156 (467)
T TIGR00873 81 I---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKI 156 (467)
T ss_pred H---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHH
Confidence 9 788888989999999999998888888888888999999999999999999998 789999999999999999999
Q ss_pred ccc------eEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCcccccccccccc
Q 022834 154 GKK------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPRTLLDVL---DLGGIANPMFKGKGPTML 223 (291)
Q Consensus 154 g~~------~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~-~~g~~~~~~~~~~---~~~~~~s~~~~~~~~~~~ 223 (291)
+.+ +.++|+.|++..+|+++|.+...++++++|++.+++ +.|++++++.+++ +.+...|++++...+.+.
T Consensus 157 a~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~ 236 (467)
T TIGR00873 157 AAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILK 236 (467)
T ss_pred hhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHh
Confidence 977 478999999999999999999999999999999985 7999999999999 566778888887776665
Q ss_pred cCCCCCCcccccHHH-------HHHHHHHHHhhcCCCchHHHH
Q 022834 224 QSNYAPAFPLKHQQK-------DMRLALALGDENAVSMPIAAA 259 (291)
Q Consensus 224 ~~~~~~~~~~~~~~~-------d~~~~~~~a~~~g~~~p~~~~ 259 (291)
..+...+ ++-.... .-++.+..|-+.|+|.|++.+
T Consensus 237 ~~d~~~~-~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~ 278 (467)
T TIGR00873 237 KKDEDGK-PLVDKILDTAGQKGTGKWTAISALDLGVPVTLITE 278 (467)
T ss_pred ccCCCCC-ccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHH
Confidence 5443211 1111111 136788889999999999776
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=253.00 Aligned_cols=254 Identities=17% Similarity=0.150 Sum_probs=211.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-------------------CC-CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------HG-ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+|.||..++..|+++||+|++||+++++.+.+.+ .| ++.+++..++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 89999999999999999999999999999999999887764 13 45566778888999999
Q ss_pred EEecCCHH---------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--CCc-EEEcccCCChHhhc
Q 022834 61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGH-FLEAPVSGSKQPAE 128 (291)
Q Consensus 61 ii~vp~~~---------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~ 128 (291)
|+|||++. .+..++ +++.+.++++++|++.||..|.+.+++...+.++ |.. +.+.++.++|....
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 99999874 366676 6777788889999999999999998887555443 332 34556566666666
Q ss_pred ccce--------EEEecCCHHHHHHHHHHHHHhc-cceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 022834 129 TGQL--------VILSAGEKALYDEAISALNVIG-KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPR 199 (291)
Q Consensus 129 ~g~~--------~~~~~g~~~~~~~~~~ll~~~g-~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~ 199 (291)
.|.. .+++|++++..+.++++++.++ ..++++++++.++..|++.|++.+..+++++|+..+|++.|+|++
T Consensus 158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~ 237 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVY 237 (411)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 6654 6788889999999999999998 578888899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcccccccccccccCCCCCCc--ccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 022834 200 TLLDVLDLGGIANPMFKGKGPTMLQSNYAPAF--PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKAR 268 (291)
Q Consensus 200 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 268 (291)
++.++++.+ +++....+.||+ ...++.||+.++.+.+++.|+++|+++++.+..+...
T Consensus 238 ~v~~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~~ 297 (411)
T TIGR03026 238 EVIEAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQP 297 (411)
T ss_pred HHHHHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHhH
Confidence 999998864 233445566664 5667999999999999999999999999887776543
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=249.80 Aligned_cols=245 Identities=24% Similarity=0.328 Sum_probs=218.9
Q ss_pred hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-----CCcccCCHHHHHhh---CCEEEEecCCHHHHHHHHhccCcccc
Q 022834 11 MGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDKGGVLE 82 (291)
Q Consensus 11 mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~---~dvvii~vp~~~~~~~v~~~~~~l~~ 82 (291)
||..|+.+|+++||+|.+|||++++.+.+.+. |+..+.+++++++. +|+||+|||.+..+++++ +++.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence 89999999999999999999999999999874 47888999998875 899999999999999999 78899
Q ss_pred ccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccce-----
Q 022834 83 QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKA----- 157 (291)
Q Consensus 83 ~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~----- 157 (291)
.+.+|++|||+||..+.+.++..+.+.++|+.|+++|++|++..+..|. .+++||+++.+++++++|+.++.++
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~ 156 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEP 156 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCC
Confidence 9999999999999999999999999999999999999999999999998 7899999999999999999999876
Q ss_pred --EeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCcccccccccccccCCCCCCc
Q 022834 158 --FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPRTLLDVL---DLGGIANPMFKGKGPTMLQSNYAPAF 231 (291)
Q Consensus 158 --~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~-~~g~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~ 231 (291)
.++|+.|++..+|+++|.+...++++++|++.+++ +.|++++++.+++ +.+...|++++...+.+..+++..+.
T Consensus 157 c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 157 CVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 89999999999999999999999999999999999 5899999999998 46778889998888888887874443
Q ss_pred ccccHHHH-------HHHHHHHHhhcCCCchHHHH
Q 022834 232 PLKHQQKD-------MRLALALGDENAVSMPIAAA 259 (291)
Q Consensus 232 ~~~~~~~d-------~~~~~~~a~~~g~~~p~~~~ 259 (291)
++-....| -......|-+.|+|+|++..
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~ 271 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITE 271 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHH
Confidence 32222222 26778889999999999765
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=215.40 Aligned_cols=161 Identities=37% Similarity=0.672 Sum_probs=144.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||||||+|.||..|+++|.++||+|++|||++++.+.+.+.|+..++++.|+++++|+||+|+|++.++++++++.+ +
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i 80 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-I 80 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-H
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-H
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999996655 8
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceE-e
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF-F 159 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~-~ 159 (291)
.+.+.+++++||+||..|.+.+++.+.+.++|+.|+|+|++|++..+..|+++++++|+++.+++++++|+.++.+++ +
T Consensus 81 ~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~~ 160 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYHY 160 (163)
T ss_dssp GGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEEE
T ss_pred hhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCceee
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999999888 4
Q ss_pred eCC
Q 022834 160 LGE 162 (291)
Q Consensus 160 ~~~ 162 (291)
+|+
T Consensus 161 ~G~ 163 (163)
T PF03446_consen 161 VGP 163 (163)
T ss_dssp -ES
T ss_pred eCc
Confidence 453
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-31 Score=206.88 Aligned_cols=276 Identities=23% Similarity=0.340 Sum_probs=223.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHh---hCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK---KCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~---~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|+|++||+|+||..++.+|.+.||+|+.||+|++..+.++..|++..+|+++++. ...+|++.||..+.+..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi--- 77 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI--- 77 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence 8999999999999999999999999999999999999999999999999888764 4789999999988899999
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhcc--
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK-- 155 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-- 155 (291)
+++.+.+.++++|||-.|+...+..+..+.+.+++++|+|+..+|+...+..|- .++++|+++.++.+.++|+.+..
T Consensus 78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge 156 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGE 156 (300)
T ss_pred HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCc
Confidence 899999999999999999998888888888999999999999999999988885 48999999999999999999875
Q ss_pred -ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcC-CCcccccccccccccCCCCCCc
Q 022834 156 -KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG--LDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAF 231 (291)
Q Consensus 156 -~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g--~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~ 231 (291)
-+.++++.|++..+|+++|.+...+++.++|.+.++++.. +|.+.+.++.+.++ ..||.++...+.+ +.+..-..
T Consensus 157 ~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af-~~d~~L~q 235 (300)
T COG1023 157 DGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAF-KKDPDLDQ 235 (300)
T ss_pred CccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHH-hhCCCHHH
Confidence 3678999999999999999999999999999999999855 56788999999875 4666665432211 11110000
Q ss_pred ccccHHHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHH-HHHHHHh
Q 022834 232 PLKHQQKD---MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSA-VFEVVKD 286 (291)
Q Consensus 232 ~~~~~~~d---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~-~~~~~~~ 286 (291)
+.....| -++.++.+-+.|+|.|++.. .++.+..+++ +..++- ++.++++
T Consensus 236 -~~g~v~dSGEGrWTv~~aldlgvpaPVia~--al~~Rf~S~~--~d~f~~kvlaalR~ 289 (300)
T COG1023 236 -ISGRVSDSGEGRWTVEEALDLGVPAPVIAL--ALMMRFRSRQ--DDTFAGKVLAALRN 289 (300)
T ss_pred -hcCeeccCCCceeehHHHHhcCCCchHHHH--HHHHHHhccc--hhhHHHHHHHHHHH
Confidence 0000011 14567778899999999877 5666766652 233332 4445544
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=229.18 Aligned_cols=271 Identities=16% Similarity=0.211 Sum_probs=214.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--------C------CcccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------G------ATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------g------~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|.||.+++..|+++||+|++|+|++++.+.+... | +...+++.++++++|+||+|+|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~ 84 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS 84 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence 799999999999999999999999999999999988887754 3 33456788888899999999966
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEcCCC-CHHH--HHHHHHHHHh---cCCcEEEcccCCChHhhcccceEEEecCCH
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHET--SIKISRAITS---KGGHFLEAPVSGSKQPAETGQLVILSAGEK 140 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 140 (291)
.++++++ +. ++++.++++++++ .+.. .+.+.+.+.+ .++.++..|..........+...++.+++.
T Consensus 85 -~~~~~v~---~~----l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~ 156 (328)
T PRK14618 85 -KALRETL---AG----LPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEP 156 (328)
T ss_pred -HHHHHHH---Hh----cCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCH
Confidence 4677777 33 3466789999986 4433 5566666655 566667777544444444466677888899
Q ss_pred HHHHHHHHHHHHhccceEeeCC-----------------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022834 141 ALYDEAISALNVIGKKAFFLGE-----------------VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD 203 (291)
Q Consensus 141 ~~~~~~~~ll~~~g~~~~~~~~-----------------~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~ 203 (291)
+.+++++++|+..+.+++...+ .|.+..+|+..|.....+...+.|+..++++.|++++++++
T Consensus 157 ~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~ 236 (328)
T PRK14618 157 GLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYG 236 (328)
T ss_pred HHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhc
Confidence 9999999999999988774333 25556677778888888999999999999999999999999
Q ss_pred HHhh----cCCCccccccc--ccccccC---C-CCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCC
Q 022834 204 VLDL----GGIANPMFKGK--GPTMLQS---N-YAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLG 273 (291)
Q Consensus 204 ~~~~----~~~~s~~~~~~--~~~~~~~---~-~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~ 273 (291)
++.. .++.|+..+++ ++++.++ + +.+++.+..+.||++++.+.+++.++++|+++++++++. +
T Consensus 237 ~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~~-------~ 309 (328)
T PRK14618 237 LSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVAR-------G 309 (328)
T ss_pred CcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHHh-------C
Confidence 9876 36677888877 3467776 4 567788889999999999999999999999999988873 5
Q ss_pred CCcHHHHHHHHHh
Q 022834 274 DNDFSAVFEVVKD 286 (291)
Q Consensus 274 ~~d~~~~~~~~~~ 286 (291)
+.+..++++.+-+
T Consensus 310 ~~~~~~~~~~~~~ 322 (328)
T PRK14618 310 GWDPLAGLRSLMG 322 (328)
T ss_pred CCCHHHHHHHHhc
Confidence 5577777776644
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=224.89 Aligned_cols=252 Identities=15% Similarity=0.133 Sum_probs=195.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc----------------ccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT----------------VGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~----------------~~~~~~~~~~~~dvvii~v 64 (291)
|||+|||+|.||..+|..|++ ||+|++||+++++.+.++ .|.. ..++..+.+++||++|+||
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 899999999999999999887 699999999999999988 3432 2334445688999999999
Q ss_pred CCH------HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--CCcEEE------cc--cCCChHhhc
Q 022834 65 ADP------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHFLE------AP--VSGSKQPAE 128 (291)
Q Consensus 65 p~~------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--~~~~~~------~~--~~~~~~~~~ 128 (291)
|++ .+++.+++..+++.+.++++++||+.||..|.+.+++.....+. |..+.+ +| +.++.....
T Consensus 85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~ 164 (425)
T PRK15182 85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR 164 (425)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence 988 33455554447888889899999999999999998764433332 443322 23 334443333
Q ss_pred ccceE-EEecCCHHHHHHHHHHHHHhc-cceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 129 TGQLV-ILSAGEKALYDEAISALNVIG-KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 129 ~g~~~-~~~~g~~~~~~~~~~ll~~~g-~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
...+. ++.|.+++..+.+.++++.+. ..++++++.+.|+..|+++|++.++.+++++|+..+|++.|+|.+++++.+.
T Consensus 165 ~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~ 244 (425)
T PRK15182 165 LTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAG 244 (425)
T ss_pred ccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence 33333 345557778889999999986 3467788899999999999999999999999999999999999999999865
Q ss_pred hcCCCcccccccccccccCCCCCC-cccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 207 LGGIANPMFKGKGPTMLQSNYAPA-FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 207 ~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
.. +.+ ..+.|| +...+..||..++...+++.|+++++++++.+..+..
T Consensus 245 ~~----~~~---------~~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~ 293 (425)
T PRK15182 245 SK----WNF---------LPFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNM 293 (425)
T ss_pred CC----CCc---------ccCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 43 221 123455 6677789999999999999999999999988776543
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=219.82 Aligned_cols=250 Identities=12% Similarity=0.071 Sum_probs=198.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-CCHHHH---------------HhhCCEEEEec
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-GSPAEV---------------IKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-~~~~~~---------------~~~~dvvii~v 64 (291)
|||+|||+|.||..+|..|+++||+|++||+++++++.+........ ...+++ .++||+||+||
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 68999999999999999999999999999999999988654322221 122222 23799999999
Q ss_pred CCH---------HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC--------------cEEEcc--
Q 022834 65 ADP---------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG--------------HFLEAP-- 119 (291)
Q Consensus 65 p~~---------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~--------------~~~~~~-- 119 (291)
|++ ..+++++ +++.+.++++++||+.||..|.+.+++...+.+.+. .++.+|
T Consensus 84 ptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~ 160 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPER 160 (415)
T ss_pred CCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCc
Confidence 987 5777777 788888889999999999999999999887765422 245777
Q ss_pred cCCChHhhcccceEEEecC-CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 022834 120 VSGSKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 198 (291)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~ 198 (291)
+..+......+....+++| +++..++++++++.++..++++++++.|+..|++.|.+.+..+++++|+..+|++.|+|+
T Consensus 161 ~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~ 240 (415)
T PRK11064 161 VLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINV 240 (415)
T ss_pred cCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 4455555555566677788 899999999999999988888889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 199 RTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 199 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
+++.+.++..+..+ .. .+.+|+...+..||..++.. +.+.+.++++++.+..+..
T Consensus 241 ~~v~~~~~~~~ri~---------~l--~pG~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~~ 295 (415)
T PRK11064 241 WELIRLANRHPRVN---------IL--QPGPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDGK 295 (415)
T ss_pred HHHHHHhccCCCcc---------cC--CCCCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHHh
Confidence 99999887654221 11 22346667778999988754 4566778888877666544
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=220.06 Aligned_cols=273 Identities=18% Similarity=0.224 Sum_probs=203.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC--------------CcccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|.||..++..|+++||+|++|+|++++.+.+.+.+ .....++++.++++|+||+|||.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 6999999999999999999999999999999999988887752 44566777788899999999965
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhc-----CCcEEEcccCCChHhhcccceEEEecCCH
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSK-----GGHFLEAPVSGSKQPAETGQLVILSAGEK 140 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 140 (291)
.++++++ +++.+.+.+++++++++++ .+.+.+.+.+.+.+. ...++..|..............++.+++.
T Consensus 82 -~~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 82 -QALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred -HHHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 6889998 7788888788999999844 443343444444332 23345666443333333344555666788
Q ss_pred HHHHHHHHHHHHhccceEeeCCCC-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022834 141 ALYDEAISALNVIGKKAFFLGEVG-----------------NGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD 203 (291)
Q Consensus 141 ~~~~~~~~ll~~~g~~~~~~~~~~-----------------~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~ 203 (291)
+.++++.++|+..+.++.+..++- .+...|+..|.....+...+.|++.++++.|++++.+++
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~ 237 (325)
T PRK00094 158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG 237 (325)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence 999999999999998877766643 334467777888888899999999999999999999988
Q ss_pred HHhhc----CCCcccccccc--cccccCC-C-----CCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCC
Q 022834 204 VLDLG----GIANPMFKGKG--PTMLQSN-Y-----APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 271 (291)
Q Consensus 204 ~~~~~----~~~s~~~~~~~--~~~~~~~-~-----~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 271 (291)
+...+ ...++..+++. ..+..+. + .++ ....+.||++++++.++++|+++|+++++++++
T Consensus 238 ~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~------- 309 (325)
T PRK00094 238 LAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL------- 309 (325)
T ss_pred ccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------
Confidence 76544 33444444433 2232222 1 113 466789999999999999999999999999887
Q ss_pred CCCCcHHHHHHHHH
Q 022834 272 LGDNDFSAVFEVVK 285 (291)
Q Consensus 272 ~~~~d~~~~~~~~~ 285 (291)
..+.+...+++.+.
T Consensus 310 ~~~~~~~~~~~~~~ 323 (325)
T PRK00094 310 YEGKDPREAVEDLM 323 (325)
T ss_pred cCCCCHHHHHHHHh
Confidence 35667777766654
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=217.54 Aligned_cols=244 Identities=17% Similarity=0.150 Sum_probs=194.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH----------------CCCcc--cCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----------------HGATV--GGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~----------------~g~~~--~~~~~~~~~~~dvvii 62 (291)
|||+|||+|.||..+|..|+. ||+|++||+++++++.+.+ .+.+. ..+..+++.++|+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 899999999999999988875 9999999999999988876 22333 2346677889999999
Q ss_pred ecCCH----------HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccce
Q 022834 63 MLADP----------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQL 132 (291)
Q Consensus 63 ~vp~~----------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 132 (291)
|||++ ..+++++ +++.+ ++++++||+.||..|.+.+++...+.+.++.| . |.....|+.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~--~-----PE~l~~G~a 148 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF--S-----PEFLREGKA 148 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE--C-----cccccCCcc
Confidence 99977 5777887 66766 57899999999999999999998876654333 3 345555655
Q ss_pred --------EEEecCCHHHHHHHHHHHHH--hccceE-eeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022834 133 --------VILSAGEKALYDEAISALNV--IGKKAF-FLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTL 201 (291)
Q Consensus 133 --------~~~~~g~~~~~~~~~~ll~~--~g~~~~-~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~ 201 (291)
.+++|++++..+++.+++.. ++..+. ++++.+.|+..|++.|.+.+..+++++|+..+|++.|+|.+++
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV 228 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQI 228 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence 67888888888888888855 454444 6788999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 202 LDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 202 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
.+.++.....++.+ + .+.+|+...+..||..++...+ .++++++++++.+..+..
T Consensus 229 ~~a~~~d~ri~~~~-------l--~pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~ 283 (388)
T PRK15057 229 IEGVCLDPRIGNHY-------N--NPSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTR 283 (388)
T ss_pred HHHhcCCCCCCCcc-------C--CCCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHh
Confidence 99998764332211 1 1345677788999999887665 457788988877766554
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=200.51 Aligned_cols=267 Identities=14% Similarity=0.142 Sum_probs=207.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHH-----------HHCC-------------CcccCCHHHHHhh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~ 56 (291)
|||+|||+|.||.+|+..|+++||+|++||++++..+.. .+.| +....+..+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 689999999999999999999999999999998876653 2334 2566788888889
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEe
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 136 (291)
+|+|++|+|.+.+++..++ +.+.... ++.+++. |+..+....++.+.+...+..+.++|+.+... .+++.++
T Consensus 83 ad~Vi~avpe~~~~k~~~~--~~l~~~~-~~~~ii~-ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~----~~lveiv 154 (308)
T PRK06129 83 ADYVQESAPENLELKRALF--AELDALA-PPHAILA-SSTSALLASAFTEHLAGRERCLVAHPINPPYL----IPVVEVV 154 (308)
T ss_pred CCEEEECCcCCHHHHHHHH--HHHHHhC-CCcceEE-EeCCCCCHHHHHHhcCCcccEEEEecCCCccc----CceEEEe
Confidence 9999999998776666665 4455555 4444444 44434455667776655566677999865321 1345577
Q ss_pred c---CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcc
Q 022834 137 A---GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP 213 (291)
Q Consensus 137 ~---g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~ 213 (291)
+ ++++.++.+.++++.+|++++++++.+.+. +++++ ..+++.|++.++++.|++++++.++++.+.+.+|
T Consensus 155 ~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~ 227 (308)
T PRK06129 155 PAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGLRW 227 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCc
Confidence 5 689999999999999999999998656664 33332 4589999999999999999999999998888777
Q ss_pred cccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 022834 214 MFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV 284 (291)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~ 284 (291)
.+ .+|.++...+.+++....+.+|..+..+.+++.+.+.|+++-..+.+-...+.-.+..++..+.++=
T Consensus 228 ~~--~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (308)
T PRK06129 228 SF--MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAWR 296 (308)
T ss_pred cC--cCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66 5676666777788888889999999999999999999999988887777777667777777776653
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=203.77 Aligned_cols=254 Identities=17% Similarity=0.248 Sum_probs=188.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||.+++..|+++||+|++|+|++. .++.++++++|+||+|+|. ..+++++ +++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~---~~l 67 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA---EQV 67 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH---HHH
Confidence 8999999999999999999999999999999753 4677888899999999987 5789988 667
Q ss_pred ccc-cCCCcEEEEcCC-CCHHHHHHHHHHHHhcCCcEEEccc---CCChH----hhcccceEEEecCCHHHHHHHHHHHH
Q 022834 81 LEQ-ICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPV---SGSKQ----PAETGQLVILSAGEKALYDEAISALN 151 (291)
Q Consensus 81 ~~~-l~~~~~vv~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~g~~~~~~~g~~~~~~~~~~ll~ 151 (291)
.+. ++++++++++++ ..|.+...+.+.+... +.+.|+ .|+.. ....+..+++++++.+..+.++++|+
T Consensus 68 ~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~---~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~ 144 (308)
T PRK14619 68 QALNLPPETIIVTATKGLDPETTRTPSQIWQAA---FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFS 144 (308)
T ss_pred HHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHH---cCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhC
Confidence 653 667889999887 3444444444434322 233343 22222 22334666788889999999999999
Q ss_pred HhccceEeeCC-CC--hhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccc
Q 022834 152 VIGKKAFFLGE-VG--NGAKM--------------KLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPM 214 (291)
Q Consensus 152 ~~g~~~~~~~~-~~--~a~~~--------------k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~ 214 (291)
..+.++++.++ .| .+..+ |+..|.....+..++.|+..++++.|++++.++++. +.+.++.
T Consensus 145 ~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~--g~gd~~~ 222 (308)
T PRK14619 145 SERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLS--GLGDLLA 222 (308)
T ss_pred CCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccccc--chhhhhe
Confidence 99988887777 33 22333 377788888899999999999999999999998853 2222222
Q ss_pred ccccccccccCCCCCCcccccH----------------HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHH
Q 022834 215 FKGKGPTMLQSNYAPAFPLKHQ----------------QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFS 278 (291)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~----------------~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~ 278 (291)
....+..+++.+|+.+..+ .+|++.+++++++.|+++|+.+++++++. +..+..
T Consensus 223 ---t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~-------~~~~~~ 292 (308)
T PRK14619 223 ---TCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQ-------GEITPQ 292 (308)
T ss_pred ---eecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHc-------CCCCHH
Confidence 1234455666666555555 89999999999999999999999998884 455666
Q ss_pred HHHHHHHh
Q 022834 279 AVFEVVKD 286 (291)
Q Consensus 279 ~~~~~~~~ 286 (291)
++++.+-+
T Consensus 293 ~~~~~l~~ 300 (308)
T PRK14619 293 QALEELME 300 (308)
T ss_pred HHHHHHHc
Confidence 66666644
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=190.44 Aligned_cols=256 Identities=16% Similarity=0.108 Sum_probs=200.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-------------------C-CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~~dvv 60 (291)
|||+|||.|.+|...+.+|++.||+|+.+|.++++.+.++.. | ...+++.+++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 999999999999999999999999999999999999887652 1 45678888899999999
Q ss_pred EEecCCHH---------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC----CcEEEcccCCC---h
Q 022834 61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG----GHFLEAPVSGS---K 124 (291)
Q Consensus 61 ii~vp~~~---------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~ 124 (291)
|+|||+|+ .++.+. +.+.+.+++.++||.-||+.+++.+++.+.+.+.. +.++..|-|-. .
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava---~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A 157 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVA---KDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA 157 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHH---HHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch
Confidence 99998774 467777 78888887779999999999999999988776653 23445553211 1
Q ss_pred HhhcccceEEEecCCH-HHHHHHHHHHHHh--ccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022834 125 QPAETGQLVILSAGEK-ALYDEAISALNVI--GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTL 201 (291)
Q Consensus 125 ~~~~~g~~~~~~~g~~-~~~~~~~~ll~~~--g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~ 201 (291)
......+-.+++|..+ .+.+.+++++..+ ...++..-+...|++.|+..|.+.++-+.+++|...+|++.|+|.+++
T Consensus 158 v~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V 237 (414)
T COG1004 158 VYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQV 237 (414)
T ss_pred hhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 1111222335666644 3577788888665 233444445799999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 022834 202 LDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKAR 268 (291)
Q Consensus 202 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 268 (291)
.+.++...--++.+ + +...|+...+..||+..+++.++++|.+.++++++.+..++..
T Consensus 238 ~~gIGlD~RIG~~f-------l--~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk 295 (414)
T COG1004 238 AEGIGLDPRIGNHF-------L--NAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRK 295 (414)
T ss_pred HHHcCCCchhhHhh-------C--CCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99888653222221 1 2344677888999999999999999999999999888776543
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-26 Score=198.89 Aligned_cols=260 Identities=18% Similarity=0.223 Sum_probs=183.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-----------------cCCHHHHHhhCCEEEEe
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----------------GGSPAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-----------------~~~~~~~~~~~dvvii~ 63 (291)
|||+|||+|.||..++..|+++||+|++|+|++ +.+.+.+.|..+ .++. +.+.++|+||+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH-HHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 799999999999999999999999999999964 446666655432 2333 456789999999
Q ss_pred cCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc--c---cCCChHhhc---ccceEEE
Q 022834 64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA--P---VSGSKQPAE---TGQLVIL 135 (291)
Q Consensus 64 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~---~g~~~~~ 135 (291)
||. .++.+++ +.+.+.++++++|++++++.. ..+.+.+.+.+. .++.+ + +..++.... .|++ .
T Consensus 81 vk~-~~~~~~~---~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~l--~ 151 (341)
T PRK08229 81 VKS-AATADAA---AALAGHARPGAVVVSFQNGVR-NADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGAL--A 151 (341)
T ss_pred ecC-cchHHHH---HHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCce--E
Confidence 965 5678888 778888888899888877643 335566555432 23332 1 121222211 3332 2
Q ss_pred ecCCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHcC
Q 022834 136 SAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM--------------------MNTFSEGLVLAEKSG 195 (291)
Q Consensus 136 ~~g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~--------------------~~~~~E~~~~~~~~g 195 (291)
++ +.+.++++.++|+..+.++.+.++++...|.|++.|++.... ..++.|++.++++.|
T Consensus 152 ~~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~G 230 (341)
T PRK08229 152 IE-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAG 230 (341)
T ss_pred ec-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcC
Confidence 32 335578999999999999999999999999999999742222 377899999999999
Q ss_pred CCHHHHHHHHhhc-----CCCcccccccccccccCCCCCCcccccHHHHHH------------HHHHHHhhcCCCchHHH
Q 022834 196 LDPRTLLDVLDLG-----GIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR------------LALALGDENAVSMPIAA 258 (291)
Q Consensus 196 ~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~------------~~~~~a~~~g~~~p~~~ 258 (291)
++++.+.++.... ...++.++...+.+...++. ...+|.+|+. ++++.|+++|+++|.++
T Consensus 231 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P~~~ 307 (341)
T PRK08229 231 IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL---ARSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPVNA 307 (341)
T ss_pred CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc---cCchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCcHHH
Confidence 9987554433322 12233333333333333332 2456999987 79999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC
Q 022834 259 AANEAFKKARSLGLGDN 275 (291)
Q Consensus 259 ~~~~~~~~~~~~g~~~~ 275 (291)
.++++++...+.|..+.
T Consensus 308 ~~~~~~~~~~~~~~~~~ 324 (341)
T PRK08229 308 RLCALVHEAERAGARPA 324 (341)
T ss_pred HHHHHHHHHHhCCCcCC
Confidence 99999999888765444
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-25 Score=185.00 Aligned_cols=255 Identities=22% Similarity=0.340 Sum_probs=206.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-----CCcccCCHHHHH---hhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVI---KKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~---~~~dvvii~vp~~~~~~~ 72 (291)
+.||+||+|-||..|+.++.++||+|.+|+|+.++.+.+.++ .+..+.+++|.+ +.+..|++.|.....++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 369999999999999999999999999999999999988764 345567888765 457889999966567888
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNV 152 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~ 152 (291)
++ +++.+++.+++++||-.|....+..+..+.+.+.|+.|+.+.++|+...+..|+. +|.||++++.+.+.++|.+
T Consensus 84 ~I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-iMpGG~~eay~~v~pil~~ 159 (473)
T COG0362 84 VI---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-IMPGGQKEAYELVAPILTK 159 (473)
T ss_pred HH---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-cCCCCCHHHHHHHHHHHHH
Confidence 99 8999999999999999998766667777788899999999999999999999985 8999999999999999999
Q ss_pred hcc------ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh---cCCCccccccccccc
Q 022834 153 IGK------KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLDL---GGIANPMFKGKGPTM 222 (291)
Q Consensus 153 ~g~------~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~-~g~~~~~~~~~~~~---~~~~s~~~~~~~~~~ 222 (291)
+.. .+.++|+-|+++.+|+++|.+...-+++++|++.+.+. .|++.+++.++... +...|.+.+-...-+
T Consensus 160 IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL 239 (473)
T COG0362 160 IAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL 239 (473)
T ss_pred HHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 863 35788999999999999999999999999999999998 89999888877763 333433333332333
Q ss_pred ccCCCCCCcccccHHHHH-------HHHHHHHhhcCCCchHHHH
Q 022834 223 LQSNYAPAFPLKHQQKDM-------RLALALGDENAVSMPIAAA 259 (291)
Q Consensus 223 ~~~~~~~~~~~~~~~~d~-------~~~~~~a~~~g~~~p~~~~ 259 (291)
...|...+.++....-|. ++....|-+.|+|++++..
T Consensus 240 ~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~e 283 (473)
T COG0362 240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITE 283 (473)
T ss_pred hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHH
Confidence 333343333333333332 5677888899999988654
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-24 Score=191.10 Aligned_cols=253 Identities=14% Similarity=0.106 Sum_probs=194.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHHCC-------------------CcccCCHHHHHhhCCE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHG-------------------ATVGGSPAEVIKKCTI 59 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~g-------------------~~~~~~~~~~~~~~dv 59 (291)
|||+|||+|.+|..+|..|+++| |+|+++|+++++++.++..+ ...+++..+.++++|+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 89999999999999999999884 78999999999998876432 3345566777889999
Q ss_pred EEEecCCHH--------------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--C--CcEEEcccC
Q 022834 60 TIGMLADPA--------------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--G--GHFLEAPVS 121 (291)
Q Consensus 60 vii~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--~--~~~~~~~~~ 121 (291)
+|+|||+|. .+++++ +.+.+.++++++||.-||..|.+.+.+...+.+. | +.+..+|.+
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PEr 158 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEF 158 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCc
Confidence 999997654 567777 7888889899999999999999999998877763 3 334467743
Q ss_pred CC---hHhhcccceEEEecCC-----HHHHHHHHHHHHHhcc-ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022834 122 GS---KQPAETGQLVILSAGE-----KALYDEAISALNVIGK-KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE 192 (291)
Q Consensus 122 ~~---~~~~~~g~~~~~~~g~-----~~~~~~~~~ll~~~g~-~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~ 192 (291)
-. ..........+++|+. .+..+.+.++++.+-. .++...++..|++.|++.|.+.++.+++++|...+|+
T Consensus 159 l~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce 238 (473)
T PLN02353 159 LAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (473)
T ss_pred cCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222222233455663 3357788889888853 4566677899999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCC--chHHHHHHHHHH
Q 022834 193 KSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVS--MPIAAAANEAFK 265 (291)
Q Consensus 193 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~--~p~~~~~~~~~~ 265 (291)
+.|+|..++.+.++.....++. .. ...+|+...+..||..++...+++.|.+ +++++++.+..+
T Consensus 239 ~~giD~~eV~~~~~~d~rig~~-------~l--~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~ 304 (473)
T PLN02353 239 ATGADVSQVSHAVGKDSRIGPK-------FL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMND 304 (473)
T ss_pred HhCCCHHHHHHHhCCCCcCCCC-------CC--CCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 9999999999988866422111 11 2334666778999999999999999988 777777664443
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-24 Score=177.72 Aligned_cols=276 Identities=16% Similarity=0.204 Sum_probs=205.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--------------CCcccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------GATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|+||++||..|+++||+|++|.|+++..+.+.+. ++..+++..++++++|+|++++|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 799999999999999999999999999999999999888763 245577899999999999999976
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhc----CCcEEEcccCCChHhhcccceEEEecCCHH
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSK----GGHFLEAPVSGSKQPAETGQLVILSAGEKA 141 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 141 (291)
+.+++++ +++.+.++++..++.++.+. +.+.+.+.+.+.+. .+.++..|-+.........+.+.+.+.+.+
T Consensus 82 -~~~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~ 157 (329)
T COG0240 82 -QALREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQE 157 (329)
T ss_pred -HHHHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHH
Confidence 7899999 78877888999999999873 33444444443332 345667776665555555666667777899
Q ss_pred HHHHHHHHHHHhccceEeeCC-CChh--HHH--------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022834 142 LYDEAISALNVIGKKAFFLGE-VGNG--AKM--------------KLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDV 204 (291)
Q Consensus 142 ~~~~~~~ll~~~g~~~~~~~~-~~~a--~~~--------------k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~ 204 (291)
..++++.+|+.--++++...| +|.. .++ .+..|.-.+.+...++|..++....|-.+++++.+
T Consensus 158 ~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gL 237 (329)
T COG0240 158 AAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGL 237 (329)
T ss_pred HHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccc
Confidence 899999999997777777766 4422 333 34467777778899999999999999999988887
Q ss_pred Hhhc----CCCccccccc--ccccccCCCC------CCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCC
Q 022834 205 LDLG----GIANPMFKGK--GPTMLQSNYA------PAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGL 272 (291)
Q Consensus 205 ~~~~----~~~s~~~~~~--~~~~~~~~~~------~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~ 272 (291)
...+ ++.|+..+++ +..+.++ .+ ....+....+....+.+.++++++++|+++++++++.
T Consensus 238 sGlGDLilTCts~~SRN~r~G~~lg~g-~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~------- 309 (329)
T COG0240 238 SGLGDLILTCTSPLSRNRRFGLLLGQG-LSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLY------- 309 (329)
T ss_pred ccccceeEecCCCccccHHHHHHHhCC-CCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-------
Confidence 7654 4555444443 2222222 11 1122444577788999999999999999999998885
Q ss_pred CCCcHHHHHHHHHhhh
Q 022834 273 GDNDFSAVFEVVKDLK 288 (291)
Q Consensus 273 ~~~d~~~~~~~~~~~~ 288 (291)
...+...+++.+-++.
T Consensus 310 ~~~~~~~~~~~L~~r~ 325 (329)
T COG0240 310 EGLDPKEAIEELMGRD 325 (329)
T ss_pred CCCCHHHHHHHHhccc
Confidence 4456666666665444
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=178.86 Aligned_cols=205 Identities=19% Similarity=0.232 Sum_probs=161.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-------------------C-CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~~dvv 60 (291)
++|+|||+|.+|..+|..++++|++|+.+|.++.+.+.++.- | .+.+++.+++ +.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEE
Confidence 589999999999999999999999999999999988877542 2 3445566554 489999
Q ss_pred EEecCCHH---------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--CCc-----EE-Ecc--cC
Q 022834 61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGH-----FL-EAP--VS 121 (291)
Q Consensus 61 ii~vp~~~---------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--~~~-----~~-~~~--~~ 121 (291)
++|||+|- .+++.. +.+.+.|++|++||.-||..|++.+++...+.+. |.. |+ .+| +.
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa---~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~ 165 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAA---RSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVL 165 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHH---HHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccC
Confidence 99998763 355555 7788999999999999999999999999887764 222 22 344 11
Q ss_pred CChHhhcccceEEEecC-CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022834 122 GSKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRT 200 (291)
Q Consensus 122 ~~~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~ 200 (291)
-++.....-...-++|| ++...+....+.+.+-...+.+.+...|++.|+..|.+..+++++++|..-+|++.|++..+
T Consensus 166 PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwe 245 (436)
T COG0677 166 PGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWE 245 (436)
T ss_pred CCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence 11111111122235666 66667788888888877778888899999999999999999999999999999999999999
Q ss_pred HHHHHhhcC
Q 022834 201 LLDVLDLGG 209 (291)
Q Consensus 201 ~~~~~~~~~ 209 (291)
+.++++...
T Consensus 246 vIeaAnt~P 254 (436)
T COG0677 246 VIEAANTKP 254 (436)
T ss_pred HHHHhccCC
Confidence 999888653
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=178.52 Aligned_cols=250 Identities=15% Similarity=0.198 Sum_probs=177.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC----cEEEE-cCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~----~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|.||.+|+..|.++|+ +|++| +|++++.+.+.+.|+....++.++++++|+||+|+ +++++++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v-~~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAV-KPQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEE-CcHHHHHHH-
Confidence 899999999999999999999998 89999 99999998888889988889999899999999999 568899999
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEec--CCHHHHHHHHHHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNV 152 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~--g~~~~~~~~~~ll~~ 152 (291)
+++.+.+.++++||+.+++.+ .+.+.+.+... .++ .+|..+. ....+...+..+ .+++.++.++++|+.
T Consensus 79 --~~l~~~~~~~~~iIs~~~g~~--~~~l~~~~~~~--~vvr~mP~~~~--~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 150 (266)
T PLN02688 79 --TELRPLLSKDKLLVSVAAGIT--LADLQEWAGGR--RVVRVMPNTPC--LVGEAASVMSLGPAATADDRDLVATLFGA 150 (266)
T ss_pred --HHHHhhcCCCCEEEEecCCCc--HHHHHHHcCCC--CEEEECCCcHH--HHhCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence 677777778888887655432 23344433221 455 5663322 222222222222 378889999999999
Q ss_pred hccceEeeCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccc-ccc--ccc-ccccCC
Q 022834 153 IGKKAFFLGE--VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPM-FKG--KGP-TMLQSN 226 (291)
Q Consensus 153 ~g~~~~~~~~--~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~-~~~--~~~-~~~~~~ 226 (291)
+|. ++++++ .......--....+.+.++..+.|+ +.+.|++++...+++..+...++. +.. ..+ .+.+.-
T Consensus 151 ~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v 226 (266)
T PLN02688 151 VGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMV 226 (266)
T ss_pred CCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence 998 777754 2222222222334455667777777 888999999999999876555543 211 122 222333
Q ss_pred CCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCC
Q 022834 227 YAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 271 (291)
Q Consensus 227 ~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 271 (291)
.+|+.+. ...++..++.|++-.+.+++.+.++++.+.+
T Consensus 227 ~spgG~t-------~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 227 TSPGGTT-------IAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred CCCchHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 3454433 3466777789999999999999999988753
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=185.99 Aligned_cols=198 Identities=19% Similarity=0.198 Sum_probs=154.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-------------------CC-CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------HG-ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+|.||..|+..|+++||+|++||+++++.+.+.+ .+ +..++++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 68999999999999999999999999999999988765422 12 56778888899999999
Q ss_pred EEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCC-
Q 022834 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE- 139 (291)
Q Consensus 61 ii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~- 139 (291)
++|+|++.+++..++ .++.+.++++. +|..|++.+.. ..+.+.+...+..++++|.. +...++++.+++|+
T Consensus 85 ieavpe~~~vk~~l~--~~l~~~~~~~~-iI~SsTsgi~~-s~l~~~~~~~~r~~~~hP~n----P~~~~~Lvevv~g~~ 156 (495)
T PRK07531 85 QESVPERLDLKRRVL--AEIDAAARPDA-LIGSSTSGFLP-SDLQEGMTHPERLFVAHPYN----PVYLLPLVELVGGGK 156 (495)
T ss_pred EEcCcCCHHHHHHHH--HHHHhhCCCCc-EEEEcCCCCCH-HHHHhhcCCcceEEEEecCC----CcccCceEEEcCCCC
Confidence 999999888888765 45666665555 45555554432 35566565566678899844 33455677788874
Q ss_pred --HHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhcCCCccc
Q 022834 140 --KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNT-FSEGLVLAEKSGLDPRTLLDVLDLGGIANPM 214 (291)
Q Consensus 140 --~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~-~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~ 214 (291)
++.++.+.++++.+|+++++++ |.+.|++.+-+... +.|++.++++.|++++++.++++.+.+.+|.
T Consensus 157 t~~e~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~ 226 (495)
T PRK07531 157 TSPETIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWA 226 (495)
T ss_pred CCHHHHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCcc
Confidence 7899999999999999999887 35556666666666 5999999999999999999999988666543
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=173.49 Aligned_cols=198 Identities=14% Similarity=0.183 Sum_probs=162.4
Q ss_pred CeEEEEecChh--------------------hHHHHHHHHhCCCcEEEEcCCcc-----hhHHHHHCCCcccCCHHHHHh
Q 022834 1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGSPAEVIK 55 (291)
Q Consensus 1 mkI~iIG~G~m--------------------G~~la~~l~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~~~~~~ 55 (291)
|||.|+|+|+- |..||..|+++||+|++|||+++ +.+.+.+.|+.+..+..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 89999999986 89999999999999999999987 445677779888889989899
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHH-HHHHHHHHh----cCCcEE-EcccCCChHhhcc
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETS-IKISRAITS----KGGHFL-EAPVSGSKQPAET 129 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~-~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~ 129 (291)
++|+||+|+|.+..+++++ +++.+.++++++|+|+|++.+... +.+.+.+.. .++.+. .+++.|. ..
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Ga----e~ 153 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIA---KNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGT----PQ 153 (342)
T ss_pred CCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccc----cc
Confidence 9999999999876689998 678888888999999999999877 666666642 233333 3333333 23
Q ss_pred cceEEEecC--------CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022834 130 GQLVILSAG--------EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTL 201 (291)
Q Consensus 130 g~~~~~~~g--------~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~ 201 (291)
+...++.++ +++.+++++++|+.+|.++++++ .+.+..+|+++|++.+...++.+|++.++++.|.++..+
T Consensus 154 g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~ 232 (342)
T PRK12557 154 HGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEM 232 (342)
T ss_pred chheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 334445543 88889999999999999887777 599999999999999999999999999999999999876
Q ss_pred HHHHh
Q 022834 202 LDVLD 206 (291)
Q Consensus 202 ~~~~~ 206 (291)
.+-..
T Consensus 233 ~~~~~ 237 (342)
T PRK12557 233 IEKQI 237 (342)
T ss_pred HHHHH
Confidence 65443
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-22 Score=169.44 Aligned_cols=249 Identities=18% Similarity=0.227 Sum_probs=170.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCC----CcEEEEcCCcc-hhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLS-KCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g----~~V~~~~r~~~-~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+|.||.+|++.|.++| ++|++|+|+++ +++.+... |+....++.++++++|+||+|| +++++.+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav-~p~~~~~vl 82 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAM-KPKDVAEAL 82 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEe-CHHHHHHHH
Confidence 79999999999999999999988 78999999764 56777654 8877888888889999999999 567888888
Q ss_pred hccCccccccCCCcEEEEc-CCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHh-hcccceEEEecCC---HHHHHHHHH
Q 022834 75 FDKGGVLEQICPGKGYIDM-STVDHETSIKISRAITSKGGHFL-EAPVSGSKQP-AETGQLVILSAGE---KALYDEAIS 148 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~-s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~~~~~g~---~~~~~~~~~ 148 (291)
+++.+.++++++||++ ++..+.+.++ .+. .+..++ .+| +.. ...+..+.+++++ ++.++.+++
T Consensus 83 ---~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~-~~~~v~r~mP----n~~~~~~~~~t~~~~~~~~~~~~~~~v~~ 151 (279)
T PRK07679 83 ---IPFKEYIHNNQLIISLLAGVSTHSIRN---LLQ-KDVPIIRAMP----NTSAAILKSATAISPSKHATAEHIQTAKA 151 (279)
T ss_pred ---HHHHhhcCCCCEEEEECCCCCHHHHHH---HcC-CCCeEEEECC----CHHHHHhcccEEEeeCCCCCHHHHHHHHH
Confidence 7787777788999997 5555554444 232 233344 444 222 2234445566654 668899999
Q ss_pred HHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCc-cccc--cccccccc
Q 022834 149 ALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN-PMFK--GKGPTMLQ 224 (291)
Q Consensus 149 ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s-~~~~--~~~~~~~~ 224 (291)
+|+.+|..++.-.+ +......--..+.+.+.++..+.|+ +.+.|++++...+++..+...+ .++. ...+..+.
T Consensus 152 l~~~~G~~~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~---~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~ 228 (279)
T PRK07679 152 LFETIGLVSVVEEEDMHAVTALSGSGPAYIYYVVEAMEKA---AKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILR 228 (279)
T ss_pred HHHhCCcEEEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 99999986543211 1111111111122333334444444 8899999999999998753322 3333 45566666
Q ss_pred CCC-CCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCC
Q 022834 225 SNY-APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 271 (291)
Q Consensus 225 ~~~-~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 271 (291)
.++ +|++++. ..++..++.|++--+.+++.+..+++.+.+
T Consensus 229 ~~v~spgg~t~-------~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 229 KEITSPGGTTE-------AGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HhcCCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 777 7777554 355556678888889999998888887753
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-22 Score=172.78 Aligned_cols=273 Identities=15% Similarity=0.171 Sum_probs=176.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC--C------------cccCCHHHHH-hhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--A------------TVGGSPAEVI-KKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--~------------~~~~~~~~~~-~~~dvvii~vp 65 (291)
|||+|||+|+||++++..|+++|++|++|+|++++.+.+...+ . ....+..+.+ .++|++|+||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiav- 79 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAV- 79 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEe-
Confidence 8999999999999999999999999999999998888777631 1 1334555665 5889999999
Q ss_pred CHHHHHHHHhccCcccc-ccCCCcEEEEcCCCCHHH-----HHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCC
Q 022834 66 DPAAALSVVFDKGGVLE-QICPGKGYIDMSTVDHET-----SIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE 139 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~-~l~~~~~vv~~s~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 139 (291)
+++++++++ +++.+ .+.+++.++.++++.... .+.+.+.++...+..+..|-+.............+.+.+
T Consensus 80 ks~~~~~~l---~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~ 156 (326)
T PRK14620 80 PTQQLRTIC---QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQN 156 (326)
T ss_pred CHHHHHHHH---HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence 668899999 78887 777777777777775221 233444443332223334421111111111122334446
Q ss_pred HHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHcCC--CHHH
Q 022834 140 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC-----------------MMNTFSEGLVLAEKSGL--DPRT 200 (291)
Q Consensus 140 ~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~-----------------~~~~~~E~~~~~~~~g~--~~~~ 200 (291)
.+..+.+.++|+..+.+++...++-...|.|++-|.+... +..++.|+..++++.|. ++++
T Consensus 157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~ 236 (326)
T PRK14620 157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT 236 (326)
T ss_pred HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 6666788888888888888888888889999998875443 35678899999999987 7788
Q ss_pred HHHHHhhc----CCCccccccc--ccccccCCC-----CCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 201 LLDVLDLG----GIANPMFKGK--GPTMLQSNY-----APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 201 ~~~~~~~~----~~~s~~~~~~--~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
++++...+ +..+...+++ +..+.++.. ....+.-....-++.+.+.++++|+++|+++.+++++.
T Consensus 237 ~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~~---- 312 (326)
T PRK14620 237 LIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLLY---- 312 (326)
T ss_pred hhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHh----
Confidence 85332211 1111111111 111111000 00111122344457899999999999999999998873
Q ss_pred CCCCCCcHHHHHHHH
Q 022834 270 LGLGDNDFSAVFEVV 284 (291)
Q Consensus 270 ~g~~~~d~~~~~~~~ 284 (291)
.+.+..++++.+
T Consensus 313 ---~~~~~~~~~~~~ 324 (326)
T PRK14620 313 ---ENISLEKTISVI 324 (326)
T ss_pred ---CCCCHHHHHHHH
Confidence 444555555543
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-22 Score=171.37 Aligned_cols=252 Identities=17% Similarity=0.179 Sum_probs=168.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-----------cCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----------GGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-----------~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|||+|.||+.++..|+++||+|++++|++++.+.+.+.|... .++..++ +++|+||+|+| +.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k-~~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVK-AYQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecc-ccc
Confidence 8999999999999999999999999999999888888887766532 3445554 78999999995 577
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC----cEEEcccCCChHhhcccceEEEecC---CHHH
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG----HFLEAPVSGSKQPAETGQLVILSAG---EKAL 142 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~ 142 (291)
+++++ +.+.+.+.+++.|+.++++.. ..+.+.+.+....+ .+..+...++......+...+.++. ..+.
T Consensus 79 ~~~~~---~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 79 LPAAL---PSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred HHHHH---HHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 88888 788888877888888888742 22344444433211 1222222222222222222233332 2244
Q ss_pred HHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcCCCH--H
Q 022834 143 YDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSGLDP--R 199 (291)
Q Consensus 143 ~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~---------------------~~~~~E~~~~~~~~g~~~--~ 199 (291)
.+.+.++|+..+..+....++....|.|++.|...+.. ..++.|...++++.|+++ +
T Consensus 155 ~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~ 234 (304)
T PRK06522 155 AEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVE 234 (304)
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChH
Confidence 67788899998988777777999999999999766543 346778999999988754 3
Q ss_pred HHHHHHhhc-----CCCcccccccc-cccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 200 TLLDVLDLG-----GIANPMFKGKG-PTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 200 ~~~~~~~~~-----~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
.+.+.+... ...++|+++.. .+..+-++. .+++++.|+++|+++|.++.++++++...+
T Consensus 235 ~~~~~~~~~~~~~~~~~sSm~~D~~~gr~tEid~i-----------~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 235 EVREYVRQVIQKTAANTSSMLQDLEAGRPTEIDAI-----------VGYVLRRGRKHGIPTPLNDALYGLLKAKES 299 (304)
T ss_pred HHHHHHHHHhhccCCCCchHHHHHHcCCCcccchh-----------ccHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 333333211 12223332211 111111111 257999999999999999999999976654
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=168.72 Aligned_cols=252 Identities=15% Similarity=0.182 Sum_probs=170.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-------------cCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------------GGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..++..|+++||+|++++| +++.+.+.+.|..+ .++.++..+++|+||+|+|.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 8999999999999999999999999999999 88888887765322 33455555789999999954
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEEcccCCChHhhcccceEEEecC----C
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQPAETGQLVILSAG----E 139 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~g----~ 139 (291)
.++++++ +.+.+.+.++++|+.++++.. ..+.+.+.++.. ++.+..++..++......+...+.++. .
T Consensus 79 ~~~~~~~---~~l~~~~~~~~~ii~~~nG~~-~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 79 YQLDAAI---PDLKPLVGEDTVIIPLQNGIG-QLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred cCHHHHH---HHHHhhcCCCCEEEEeeCCCC-hHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 6788888 788887878888888888742 334555555433 233344444433222222332334432 2
Q ss_pred HHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH
Q 022834 140 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC---------------------MMNTFSEGLVLAEKSGLDP 198 (291)
Q Consensus 140 ~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~---------------------~~~~~~E~~~~~~~~g~~~ 198 (291)
.+..+.+.++|...+..+....++....|.|++.|...+. +..++.|...++++.|+++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4566788888998888777777789999999999977655 2346778999999988764
Q ss_pred H--HHHHHHhh-----cCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 022834 199 R--TLLDVLDL-----GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKAR 268 (291)
Q Consensus 199 ~--~~~~~~~~-----~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 268 (291)
. ...+.+.. ....++|+++.. .+.+ ++ ..-=.++++++++++|+++|.++++++++....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~sSm~~D~~----~gr~-----tE-id~i~G~vv~~a~~~gv~~P~~~~l~~~~~~~~ 301 (305)
T PRK12921 235 RDDVVEEIVKIFAGAPGDMKTSMLRDME----KGRP-----LE-IDHLQGVLLRRARAHGIPTPILDTVYALLKAYE 301 (305)
T ss_pred ChhHHHHHHHHHhccCCCCCcHHHHHHH----cCCc-----cc-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 2 33232221 011222222111 0000 10 011136799999999999999999999997654
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=170.16 Aligned_cols=271 Identities=14% Similarity=0.171 Sum_probs=192.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC---------------CcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---------------ATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g---------------~~~~~~~~~~~~~~dvvii~vp 65 (291)
|||+|||+|.||++++..|+++| +|++|.|++++.+.+++.+ +...++..+.++++|+||+|+|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 79999999999999999999998 6889999999988887542 1234566777889999999995
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCCCHHH-----HHHHHHHHHhcCCcEEEcccCCChHhhcccceE--EEecC
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHET-----SIKISRAITSKGGHFLEAPVSGSKQPAETGQLV--ILSAG 138 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~g 138 (291)
++.+++++ +++.+.+++++.++.++++.... .+.+.+.+.......+..|-+.. ....|..+ ++.+.
T Consensus 87 -s~~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~--ev~~g~~t~~via~~ 160 (341)
T PRK12439 87 -SHGFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAR--EVAEGYAAAAVLAMP 160 (341)
T ss_pred -HHHHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHH--HHHcCCCeEEEEEeC
Confidence 57899999 88888887888889888875431 23333333322222345552221 11224322 34445
Q ss_pred CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHcCCCHHHH
Q 022834 139 EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC-----------------MMNTFSEGLVLAEKSGLDPRTL 201 (291)
Q Consensus 139 ~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~-----------------~~~~~~E~~~~~~~~g~~~~~~ 201 (291)
+++..+.++++|+..+.+++...|+-..+|.|.+-|.+... +..++.|+.+++++.|.+++++
T Consensus 161 ~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~ 240 (341)
T PRK12439 161 DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETF 240 (341)
T ss_pred CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 77778899999999999988888888888999888865543 4568889999999999999999
Q ss_pred HHHHhhc----CCCccccccc--ccccccCCCCC-----CcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 202 LDVLDLG----GIANPMFKGK--GPTMLQSNYAP-----AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 202 ~~~~~~~----~~~s~~~~~~--~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
+.+...+ ++.|...+++ +..+.++.... -........-+..+.+.++++++++|+++++++++.
T Consensus 241 ~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il~----- 315 (341)
T PRK12439 241 AGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVIN----- 315 (341)
T ss_pred cccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHHh-----
Confidence 8877654 3444333332 33333322100 011234567778899999999999999999998884
Q ss_pred CCCCCcHHHHHHHHH
Q 022834 271 GLGDNDFSAVFEVVK 285 (291)
Q Consensus 271 g~~~~d~~~~~~~~~ 285 (291)
++.+...+++.+-
T Consensus 316 --~~~~~~~~~~~l~ 328 (341)
T PRK12439 316 --HGSTVEQAYRGLI 328 (341)
T ss_pred --CCCCHHHHHHHHh
Confidence 5556666666653
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=162.20 Aligned_cols=248 Identities=19% Similarity=0.241 Sum_probs=181.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCC----CcEEEEcCCcchhHHHHH-CCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|+||.+|+..|.++| .+|++.+|++++.+.+.+ .|+..+++..++++++|+||+|| +|+.+++++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~~vl- 79 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLEEVL- 79 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHHHHH-
Confidence 68999999999999999999999 589999999999975554 46666777788999999999999 889999999
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEE-EecC---CHHHHHHHHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVI-LSAG---EKALYDEAISAL 150 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~g---~~~~~~~~~~ll 150 (291)
+++.+ ..++++||+...+. +.+.+.+++. +..++ .+| +..+..|..+. ++.+ +++..+.+..+|
T Consensus 80 --~~l~~-~~~~~lvISiaAGv--~~~~l~~~l~--~~~vvR~MP----Nt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~ 148 (266)
T COG0345 80 --SKLKP-LTKDKLVISIAAGV--SIETLERLLG--GLRVVRVMP----NTPALVGAGVTAISANANVSEEDKAFVEALL 148 (266)
T ss_pred --HHhhc-ccCCCEEEEEeCCC--CHHHHHHHcC--CCceEEeCC----ChHHHHcCcceeeecCccCCHHHHHHHHHHH
Confidence 78877 66899999765554 4466777776 34454 777 66666665544 3332 677788999999
Q ss_pred HHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCcccccccc--c-ccccC
Q 022834 151 NVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-IANPMFKGKG--P-TMLQS 225 (291)
Q Consensus 151 ~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~-~~s~~~~~~~--~-~~~~~ 225 (291)
+.+|..+++-.+ +....++--....+.+.++..+.++ +.+.|+++++.++++..+. +...++.... | .+.+.
T Consensus 149 ~~~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~ 225 (266)
T COG0345 149 SAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQ 225 (266)
T ss_pred HhcCCeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 999987665544 4555555455566666666666666 8899999999999988653 2223333332 2 33444
Q ss_pred CCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCC
Q 022834 226 NYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 271 (291)
Q Consensus 226 ~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 271 (291)
-.+||.+....+ +..++.|++.-+.+++.+.++++.+-|
T Consensus 226 VtSPGGtTiagl-------~~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 226 VTSPGGTTIAGL-------RVLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred CcCCCchHHHHH-------HHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 457776655443 344488888889999988888877643
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=162.58 Aligned_cols=250 Identities=15% Similarity=0.181 Sum_probs=180.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC----cEEEEcCCcchhHHHHH-CCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|.||.+|+..|.++|+ +|++++|++++++.+.+ .|+....+..+++++||+||+|+| |+++++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence 689999999999999999999885 69999999999888875 687777788888899999999995 68899999
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEE-EecC---CHHHHHHHHHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVI-LSAG---EKALYDEAISALN 151 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~g---~~~~~~~~~~ll~ 151 (291)
+++.+.++++++||++..+.+ .+.+.+.+....-.+..+| +.....|..+. ++.+ +++..+.+..+|+
T Consensus 81 --~~l~~~~~~~~lvISi~AGi~--i~~l~~~l~~~~~vvR~MP----N~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~ 152 (272)
T PRK12491 81 --NQIKDQIKNDVIVVTIAAGKS--IKSTENEFDRKLKVIRVMP----NTPVLVGEGMSALCFNEMVTEKDIKEVLNIFN 152 (272)
T ss_pred --HHHHHhhcCCcEEEEeCCCCc--HHHHHHhcCCCCcEEEECC----ChHHHHcCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 788887877889998776643 4556666643212233777 66665555444 2332 5667789999999
Q ss_pred HhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC-cccccc--ccc-ccccCC
Q 022834 152 VIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA-NPMFKG--KGP-TMLQSN 226 (291)
Q Consensus 152 ~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~-s~~~~~--~~~-~~~~~~ 226 (291)
.+|..++.-.+ +....++--+...+.+.++..+.++ +.+.|++.++..+++.+.... ..++.. ..+ .+.+.-
T Consensus 153 ~~G~~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V 229 (272)
T PRK12491 153 IFGQTEVVNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMV 229 (272)
T ss_pred cCCCEEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence 99987544333 5555555555666666666666666 888999999999888765322 222211 222 334444
Q ss_pred CCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 227 YAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 227 ~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
.+||.+.. ..++..++.|++--+.+++.+..+++.+.
T Consensus 230 ~sPGGtT~-------~gl~~le~~~~~~~~~~av~aa~~r~~el 266 (272)
T PRK12491 230 CSPGGTTI-------EAVATLEEKGLRTAIISAMKRCTQKSMEM 266 (272)
T ss_pred CCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHH
Confidence 56765543 35556668899989999998888887663
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=166.77 Aligned_cols=253 Identities=17% Similarity=0.211 Sum_probs=181.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc------------CCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG------------GSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~------------~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+|+|+|.||+.++..|+++|++|+++.|++. ++++++.|..+. ....+....+|+||++| |..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v-Ka~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV-KAY 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe-ccc
Confidence 8999999999999999999999999999999754 888888764321 22234455799999999 889
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEEcccCCChHhhccc--ceEE--EecCCH
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQPAETG--QLVI--LSAGEK 140 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g--~~~~--~~~g~~ 140 (291)
++++++ +.+.+.+++++.|+.+.|+.... +.+.+.++.. |+.++.+-..+.......| ...+ +.++.+
T Consensus 79 q~~~al---~~l~~~~~~~t~vl~lqNG~g~~-e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 79 QLEEAL---PSLAPLLGPNTVVLFLQNGLGHE-EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cHHHHH---HHhhhcCCCCcEEEEEeCCCcHH-HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 999999 89999998999999888886543 4666666554 2233333322222222233 3332 223355
Q ss_pred HHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcC--CC
Q 022834 141 ALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSG--LD 197 (291)
Q Consensus 141 ~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~---------------------~~~~~E~~~~~~~~g--~~ 197 (291)
+..+.+.++|+..+.++.+..++-...|.|++.|+..+.. ...+.|+..++.+.| ++
T Consensus 155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~ 234 (307)
T COG1893 155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELP 234 (307)
T ss_pred HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 7788999999999999888888999999999999888853 346678888999988 44
Q ss_pred H---HHHHHHHhhc--CCCccccccccc-ccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 198 P---RTLLDVLDLG--GIANPMFKGKGP-TMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 198 ~---~~~~~~~~~~--~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
. +.+....... ...|+|+++... +.++.|+.. +++++.|+++|+++|.++.++++++.....
T Consensus 235 ~~~~~~v~~~~~~~~~~~~sSM~qDl~~gr~tEid~i~-----------G~vv~~a~~~gi~~P~~~~L~~lvk~~e~~ 302 (307)
T COG1893 235 EEVVERVLAVIRATDAENYSSMLQDLEKGRPTEIDAIN-----------GAVVRLAKKHGLATPVNDTLYALLKAKEAE 302 (307)
T ss_pred HHHHHHHHHHHHhcccccCchHHHHHHcCCcccHHHHh-----------hHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 4 3333444433 344555544321 333333322 579999999999999999999999877653
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-21 Score=165.42 Aligned_cols=240 Identities=17% Similarity=0.176 Sum_probs=164.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc--------------cCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------GGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~--------------~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|.||+.+|..|+++||+|+++.|++ .+.+...|... .++. +....+|+||+|||
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK- 81 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLK- 81 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEec-
Confidence 799999999999999999999999999999975 34555544321 1122 33567899999994
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEEcccCCChHhhcc--cceEE-EecC-
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQPAET--GQLVI-LSAG- 138 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--g~~~~-~~~g- 138 (291)
..++.+++ +.+.+.+.+++.|+.+.++.. ..+.+.+.+++. ++.++.+...++...... |...+ ...+
T Consensus 82 ~~~~~~~~---~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~ 157 (313)
T PRK06249 82 TTANALLA---PLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGP 157 (313)
T ss_pred CCChHhHH---HHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCC
Confidence 46677777 777777878888888888743 335555555543 233343333333222222 33222 1122
Q ss_pred C-----HHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Q 022834 139 E-----KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAE 192 (291)
Q Consensus 139 ~-----~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~---------------------~~~~~E~~~~~~ 192 (291)
+ .+..+.+.++|+..|..+...+++....|.|++.|+..+.. ..++.|+..+++
T Consensus 158 ~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~ 237 (313)
T PRK06249 158 AADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAA 237 (313)
T ss_pred cccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 2 35667788899999998888888999999999999876653 345668888888
Q ss_pred HcCCCHH-----HHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHH------------HHHHHHHhhcCCCch
Q 022834 193 KSGLDPR-----TLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM------------RLALALGDENAVSMP 255 (291)
Q Consensus 193 ~~g~~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~------------~~~~~~a~~~g~~~p 255 (291)
+.|++.+ .+.+.+.... ....+|++|+ +++++.++++|+++|
T Consensus 238 a~Gi~~~~~~~~~~~~~~~~~~---------------------~~~sSM~qD~~~gr~tEid~i~G~vv~~a~~~Gi~~P 296 (313)
T PRK06249 238 ACGHTLPEGYADHMLAVTERMP---------------------DYRPSMYHDFEEGRPLELEAIYANPLAAARAAGCAMP 296 (313)
T ss_pred hcCCCCChhHHHHHHHHhhcCC---------------------CCCChHHHHHHCCCcccHHHHhhHHHHHHHHhCCCCc
Confidence 8887632 1222211111 1123344553 789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 022834 256 IAAAANEAFKKARS 269 (291)
Q Consensus 256 ~~~~~~~~~~~~~~ 269 (291)
.++.++++++....
T Consensus 297 ~~~~l~~~l~~~e~ 310 (313)
T PRK06249 297 RVEMLYQALEFLDR 310 (313)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999886654
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=166.67 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=170.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCccc-----------CCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVG-----------GSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~-----------~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+|+|+|.||+.++..|+++|++|++++|+.++++.+.+. |+... ....+....+|+||+|| |..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v-K~~ 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC-KAY 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC-CHH
Confidence 899999999999999999999999999999988888888754 43221 11112235689999999 888
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEEcccCCChHhhcccceEEEecC-CHHHH
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQPAETGQLVILSAG-EKALY 143 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~g-~~~~~ 143 (291)
++++++ +.+.+.+.+++.|+.+.|+... .+.+.+.+++. ++.++.+...++....+.+...+.++. +.+..
T Consensus 82 ~~~~al---~~l~~~l~~~t~vv~lQNGv~~-~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~~~ 157 (305)
T PRK05708 82 DAEPAV---ASLAHRLAPGAELLLLQNGLGS-QDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNPTA 157 (305)
T ss_pred hHHHHH---HHHHhhCCCCCEEEEEeCCCCC-HHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCcch
Confidence 999999 7888989899999999988542 23455555432 222232222222222233333334443 33456
Q ss_pred HHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHcCCCHH--HHHH
Q 022834 144 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM------------------MNTFSEGLVLAEKSGLDPR--TLLD 203 (291)
Q Consensus 144 ~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~------------------~~~~~E~~~~~~~~g~~~~--~~~~ 203 (291)
+++.++|...|..+.+..++....|.|++.|+..+.. ..++.|...++++.|++.. .+.+
T Consensus 158 ~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~~ 237 (305)
T PRK05708 158 PAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLHE 237 (305)
T ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence 7788889988888887778999999999999876653 3456788888888887532 2222
Q ss_pred HHh----hc-CCCcccccccc-cccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH-CCCC
Q 022834 204 VLD----LG-GIANPMFKGKG-PTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS-LGLG 273 (291)
Q Consensus 204 ~~~----~~-~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~-~g~~ 273 (291)
.+. .. ...++|+++.. .+..+-++. .+++++.++++|+++|.+++++++++.... .|.+
T Consensus 238 ~~~~~~~~~~~~~sSM~qD~~~gR~tEid~i-----------~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~~~~~ 303 (305)
T PRK05708 238 EVQRVIQATAANYSSMYQDVRAGRRTEISYL-----------LGYACRAADRHGLPLPRLQHLQQRLVAHLRARGLP 303 (305)
T ss_pred HHHHHHHhccCCCcHHHHHHHcCCceeehhh-----------hhHHHHHHHHcCCCCchHHHHHHHHHHHHHhcCCC
Confidence 221 11 11222332211 011111111 267999999999999999999999877654 4443
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-20 Score=156.23 Aligned_cols=192 Identities=17% Similarity=0.330 Sum_probs=144.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHCCCc-ccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|||+|||+|.||.+++..|.++|+ +|++|||++++.+.+.+.|.. ...+..++. ++|+||+|+|. ..+.+++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~-~~~~~~~--- 75 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPV-DAIIEIL--- 75 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcH-HHHHHHH---
Confidence 899999999999999999999996 688999999988888777764 345666765 59999999966 5677777
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCC----hHhh----cccceEEEec---CCHHHHHH
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGS----KQPA----ETGQLVILSA---GEKALYDE 145 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~----~~g~~~~~~~---g~~~~~~~ 145 (291)
+++.+ ++++++|+|.++..+...+.+.+. .+..|+ .+|+.|. +..+ ..|...++++ .+++.++.
T Consensus 76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~ 151 (275)
T PRK08507 76 PKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQER 151 (275)
T ss_pred HHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHH
Confidence 67777 778999999888766655555433 234577 5598764 3332 2566666665 36678899
Q ss_pred HHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 146 AISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 146 ~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
+.++|+.+|.+++++++.++...+++++++.. .....+.+.. . .+.+.+.+.++..
T Consensus 152 v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~--~--~~~~~~~~~~~~~ 207 (275)
T PRK08507 152 AKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTV--L--KEEDERNIFDLAG 207 (275)
T ss_pred HHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHH--H--hcCChHHHHhhcc
Confidence 99999999999999999999999999999864 4444445553 1 3556665545443
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-21 Score=159.83 Aligned_cols=254 Identities=23% Similarity=0.319 Sum_probs=198.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC---C--CcccCCHHHHH---hhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH---G--ATVGGSPAEVI---KKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~---g--~~~~~~~~~~~---~~~dvvii~vp~~~~~~~ 72 (291)
+.||.||++-||..|+.+++.+||.|.+|+|+..+.+.+.+. | +....|+++.+ +.+.+|++.|.....++.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 469999999999999999999999999999999999887643 3 33456888876 457888888877778888
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNV 152 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~ 152 (291)
.+ +++.+++.+|++|||-.|.......+-.+.+.+.|+-|+.+.++|+...++.|+. ++.+|+.++.+.++++|..
T Consensus 87 ~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-lMpGg~~~Awp~ik~ifq~ 162 (487)
T KOG2653|consen 87 FI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-LMPGGSKEAWPHIKDIFQK 162 (487)
T ss_pred HH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-cCCCCChHHHHHHHHHHHH
Confidence 88 8999999999999999998766666677778888999999999999999999985 7899999999999999987
Q ss_pred hc-------cceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhhc---CCCcccccccccc
Q 022834 153 IG-------KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLDLG---GIANPMFKGKGPT 221 (291)
Q Consensus 153 ~g-------~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~-~g~~~~~~~~~~~~~---~~~s~~~~~~~~~ 221 (291)
+. ..+.++|+-|++..+|+++|.+..+-+++++|++.+..+ .|++-+++.++...= ..-|...+ ....
T Consensus 163 iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLie-IT~d 241 (487)
T KOG2653|consen 163 IAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIE-ITAD 241 (487)
T ss_pred HHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHH-HhHH
Confidence 75 235789999999999999999999999999999999999 889999888877641 11111111 1112
Q ss_pred cccCCCCCCcccccHHHHH-------HHHHHHHhhcCCCchHHHH
Q 022834 222 MLQSNYAPAFPLKHQQKDM-------RLALALGDENAVSMPIAAA 259 (291)
Q Consensus 222 ~~~~~~~~~~~~~~~~~d~-------~~~~~~a~~~g~~~p~~~~ 259 (291)
+++-+-..|.++-.-..|. ...+..|.+.|+|.|++..
T Consensus 242 Ilk~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~e 286 (487)
T KOG2653|consen 242 ILKFKDEDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGE 286 (487)
T ss_pred HhheeccCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHH
Confidence 2211112222222222221 5567778899999988654
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-20 Score=161.10 Aligned_cols=274 Identities=12% Similarity=0.038 Sum_probs=191.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-------CcEEEEcCCcc-----hhHHHHHC--------------CCcccCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-------FKVTVWNRTLS-----KCDELVAH--------------GATVGGSPAEVI 54 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-------~~V~~~~r~~~-----~~~~l~~~--------------g~~~~~~~~~~~ 54 (291)
|||+|||+|+||+++|..|+++| |+|.+|.|+++ ..+.+.+. ++..+++..+++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 79999999999999999999987 89999999876 35666542 234467788889
Q ss_pred hhCCEEEEecCCHHHHHHHHhccCcccc--ccCCCcEEEEcCCCCHH-------HHHHHHHHHHhcCCcEEEcccCCChH
Q 022834 55 KKCTITIGMLADPAAALSVVFDKGGVLE--QICPGKGYIDMSTVDHE-------TSIKISRAITSKGGHFLEAPVSGSKQ 125 (291)
Q Consensus 55 ~~~dvvii~vp~~~~~~~v~~~~~~l~~--~l~~~~~vv~~s~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (291)
+++|+|+++||. +.+++++ +++.+ .++++.++|+++.+... ..+-+.+.+. ..+.++..|-+....
T Consensus 92 ~~aDiIvlAVPs-q~l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGPs~A~Ev 166 (365)
T PTZ00345 92 EDADLLIFVIPH-QFLESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGANVANDV 166 (365)
T ss_pred hcCCEEEEEcCh-HHHHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECCCHHHHH
Confidence 999999999955 7899999 78877 67667788888776321 1233333332 234445777555555
Q ss_pred hhcccceEEEecCCHHHHHHHHHHHHHhccceEeeCC-CCh--hHHHHH--------------HHHHHHHHHHHHHHHHH
Q 022834 126 PAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE-VGN--GAKMKL--------------VVNMIMGCMMNTFSEGL 188 (291)
Q Consensus 126 ~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~~~-~~~--a~~~k~--------------~~n~~~~~~~~~~~E~~ 188 (291)
.....+...+.+.+.+..+.++++|+.-..+++...| .|. +.++|- ..|.-.+.+...+.|+.
T Consensus 167 a~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~ 246 (365)
T PTZ00345 167 AREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMK 246 (365)
T ss_pred HcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 5555555556677888888999999887777777777 543 334443 36677777888999999
Q ss_pred HHHHHcC--CCHHHHHHHHhhc----CCCcccccccccccccCC--CC--C------CcccccHHHHHHHHHHHHhhcCC
Q 022834 189 VLAEKSG--LDPRTLLDVLDLG----GIANPMFKGKGPTMLQSN--YA--P------AFPLKHQQKDMRLALALGDENAV 252 (291)
Q Consensus 189 ~~~~~~g--~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~--~~--~------~~~~~~~~~d~~~~~~~a~~~g~ 252 (291)
+++++.| .++++++.+...+ ++.|+....++..+.++. .+ . .........-+..+.+.++++++
T Consensus 247 ~l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i 326 (365)
T PTZ00345 247 LFGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDL 326 (365)
T ss_pred HHHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCC
Confidence 9999996 4889998877654 344432222344444321 11 0 01223356667888999999999
Q ss_pred --CchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHh
Q 022834 253 --SMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286 (291)
Q Consensus 253 --~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 286 (291)
++|+++++++++. ++.+...+++.+..
T Consensus 327 ~~~~Pi~~~vy~il~-------~~~~~~~~~~~l~~ 355 (365)
T PTZ00345 327 KKEFPLFTVTYKIAF-------EGADPSSLIDVLST 355 (365)
T ss_pred CCCCCHHHHHHHHHh-------CCCCHHHHHHHHHc
Confidence 8999999999884 44555566665543
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-20 Score=157.71 Aligned_cols=259 Identities=12% Similarity=0.019 Sum_probs=179.8
Q ss_pred eEEEEecChhhHHHHHHHHhCC--------CcEEEEcC-----CcchhHHHHHC--------C------CcccCCHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG--------FKVTVWNR-----TLSKCDELVAH--------G------ATVGGSPAEVI 54 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g--------~~V~~~~r-----~~~~~~~l~~~--------g------~~~~~~~~~~~ 54 (291)
||+|||+|+||+++|..|+++| |+|++|.| +++..+.+.+. | +..+++.++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 7999999999999999999999 99999998 44444544432 1 33457888899
Q ss_pred hhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCH-H--H----HHHHHHHHHhcCCcEEEcccCCChHhh
Q 022834 55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH-E--T----SIKISRAITSKGGHFLEAPVSGSKQPA 127 (291)
Q Consensus 55 ~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~-~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (291)
+++|+||++||. +.+++++ +++.+.+++++++|.++.+.. . + .+-+.+.+ ...+.++..|.+......
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~Eva~ 155 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANEVAK 155 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHHHHc
Confidence 999999999966 7799999 788888888889999887732 2 2 22233333 223444566755554444
Q ss_pred cccceEEEecCC----HHHHHHHHHHHHHhccceEeeCC-CCh--hHHHHHH--------------HHHHHHHHHHHHHH
Q 022834 128 ETGQLVILSAGE----KALYDEAISALNVIGKKAFFLGE-VGN--GAKMKLV--------------VNMIMGCMMNTFSE 186 (291)
Q Consensus 128 ~~g~~~~~~~g~----~~~~~~~~~ll~~~g~~~~~~~~-~~~--a~~~k~~--------------~n~~~~~~~~~~~E 186 (291)
...+.+.+.+.+ .+..+.++++|+.--.+++...| .|. +.++|-+ .|.-.+.+...+.|
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~E 235 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLE 235 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 444455555566 77788999999877777777666 543 3444433 56777778889999
Q ss_pred HHHHHHHcCCCHH--HHHHHHhhc----CCCcccccccccccccCCCCC--------CcccccHHHHHHHHHHHHhhcCC
Q 022834 187 GLVLAEKSGLDPR--TLLDVLDLG----GIANPMFKGKGPTMLQSNYAP--------AFPLKHQQKDMRLALALGDENAV 252 (291)
Q Consensus 187 ~~~~~~~~g~~~~--~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~a~~~g~ 252 (291)
+.+++++.|-+++ +++.+...+ ++.|+....++..+.+...+. .........-+..+.+.+++.++
T Consensus 236 m~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i 315 (342)
T TIGR03376 236 MIKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNK 315 (342)
T ss_pred HHHHHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCC
Confidence 9999999999777 888776643 233322222333443311110 11123345667788899999999
Q ss_pred C--chHHHHHHHHHH
Q 022834 253 S--MPIAAAANEAFK 265 (291)
Q Consensus 253 ~--~p~~~~~~~~~~ 265 (291)
+ +|+++++++++.
T Consensus 316 ~~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 316 DDEFPLFEAVYQILY 330 (342)
T ss_pred CcCCCHHHHHHHHHh
Confidence 9 999999999884
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-20 Score=156.21 Aligned_cols=178 Identities=16% Similarity=0.264 Sum_probs=137.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc-ccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+|.||.+++..|.++|++|++||++++..+.+.+.|.. ...+..+.++++|+||+|+|. ..+.+++ ++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~-~~~~~~~---~~ 76 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPI-GLLLPPS---EQ 76 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCH-HHHHHHH---HH
Confidence 899999999999999999999999999999999988888877643 232333567899999999965 5567777 77
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChH-hh-------cccceEEEec---CCHHHHHHHH
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQ-PA-------ETGQLVILSA---GEKALYDEAI 147 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-------~~g~~~~~~~---g~~~~~~~~~ 147 (291)
+.+.++++.+|.|+++..+...+.+... ...|+ .+|+.|.+. .. ..+...+++. ++++.++.+.
T Consensus 77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~----~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~ 152 (279)
T PRK07417 77 LIPALPPEAIVTDVGSVKAPIVEAWEKL----HPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVE 152 (279)
T ss_pred HHHhCCCCcEEEeCcchHHHHHHHHHHh----hCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHH
Confidence 8888878899999988877666555432 22477 489988752 22 2344444443 3678889999
Q ss_pred HHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHH
Q 022834 148 SALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSE 186 (291)
Q Consensus 148 ~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E 186 (291)
++++.+|.+++++++.+.+..+++++++.......++..
T Consensus 153 ~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~ 191 (279)
T PRK07417 153 ELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALIQT 191 (279)
T ss_pred HHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 999999999999999999999999999876555444433
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=140.33 Aligned_cols=121 Identities=41% Similarity=0.748 Sum_probs=112.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccc-cccCCCCCCcccccHHHHHHH
Q 022834 164 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPT-MLQSNYAPAFPLKHQQKDMRL 242 (291)
Q Consensus 164 ~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~ 242 (291)
|.+..+|+++|++...++..++|++.++++.|++++.++++++.+.+.|++++.+.++ +..++|.|+|+++.+.||+++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 6789999999999999999999999999999999999999999999999999999884 899999999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 022834 243 ALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV 284 (291)
Q Consensus 243 ~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~ 284 (291)
+.+.+++.|+|+|+.+.+.+.++.+.++|++++|++++++.|
T Consensus 81 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 81 ALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999976
|
... |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=159.07 Aligned_cols=178 Identities=19% Similarity=0.289 Sum_probs=144.4
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
++|+||| +|.||..++..|.++||+|++|++++. .+.++++.+||+||+|+|.. ...+++ ++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~-~~~~~~---~~ 161 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIH-LTEEVI---AR 161 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHH-HHHHHH---HH
Confidence 5899998 999999999999999999999998631 25667788999999999875 467777 67
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEecC-CHHHHHHHHHHHHHhccce
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAG-EKALYDEAISALNVIGKKA 157 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~~~ 157 (291)
+.+ ++++++|+|+++..+.....+.+... ..|+ .+|++|+......+...+++++ +++.++.+.++++.+|.++
T Consensus 162 l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v 237 (374)
T PRK11199 162 LPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARL 237 (374)
T ss_pred HhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCEE
Confidence 777 78999999999998877777765432 2588 9999998766666676667666 5677899999999999999
Q ss_pred EeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022834 158 FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD 203 (291)
Q Consensus 158 ~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~ 203 (291)
+++++.++...+++++.+ +++..++++..+++ .+.+.+.+.+
T Consensus 238 ~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 238 HRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred EECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 999999999999999854 67777777777766 7777666544
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-19 Score=159.71 Aligned_cols=194 Identities=21% Similarity=0.286 Sum_probs=149.7
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH-HCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+||| +|.||.+++..|.++|++|++|+|++++...+. +.|+....+..+.+.++|+||+|+|. ..+.+++ +
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl---~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI---K 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH---H
Confidence 8999997 899999999999999999999999988765544 44777677888888899999999966 5678888 7
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEecC---CHHHHHHHHHHHHHhc
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAG---EKALYDEAISALNVIG 154 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g---~~~~~~~~~~ll~~~g 154 (291)
++.+.++++++|+|+++..+...+.+.+.++ .+..|+ .+|++|+......+...+++++ +.+.++.++++|+.+|
T Consensus 77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G 155 (437)
T PRK08655 77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEG 155 (437)
T ss_pred HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 8888888999999999988888888877654 367788 5699987666667777676654 5778899999999999
Q ss_pred cceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022834 155 KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD 203 (291)
Q Consensus 155 ~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~ 203 (291)
.+++.+++..+...+-.++. .+++..++.+.. +.+.|++.+....
T Consensus 156 ~~v~~~~~e~HD~~~a~vs~---lph~~a~al~~~-l~~~g~~~~~~~~ 200 (437)
T PRK08655 156 ARVIVTSPEEHDRIMSVVQG---LTHFAYISIAST-LKRLGVDIKESRK 200 (437)
T ss_pred CEEEECCHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHcCCCHHHHHh
Confidence 99888876555555433333 334444444433 3667888776544
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-20 Score=156.69 Aligned_cols=190 Identities=16% Similarity=0.190 Sum_probs=140.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-------C-----------------CCcccCCHHHHHhh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------H-----------------GATVGGSPAEVIKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-------~-----------------g~~~~~~~~~~~~~ 56 (291)
.||+|||+|.||..+|..|+++||+|++||+++++++.+.+ . +++.+.+..+.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 37999999999999999999999999999999998877542 1 13456678888899
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEE-EEcCCCCHHHHHHHHHHHH-hcCCcEEEcccCCChHhhcccceEE
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGY-IDMSTVDHETSIKISRAIT-SKGGHFLEAPVSGSKQPAETGQLVI 134 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~v-v~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~ 134 (291)
||+||+|+|.+.+++..++ .++.+.+++++++ +++|+..+........... ..+.+|+ +|+.+ ++++.
T Consensus 82 aD~Vi~avpe~~~~k~~~~--~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~-------~~Lve 151 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVF--ETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHK-------MKLVE 151 (288)
T ss_pred CCEEEEeccCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCccc-------CceEE
Confidence 9999999999888777665 4577777788866 6788877765443322111 1245555 55433 35677
Q ss_pred EecC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022834 135 LSAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG 209 (291)
Q Consensus 135 ~~~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~ 209 (291)
++++ +++.++.+.++++.+|+.++++++ .| ++.|= ....++.|++.+.+.--.+++++-..+..+.
T Consensus 152 ~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~G------f~~nR---l~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~ 221 (288)
T PRK09260 152 LIRGLETSDETVQVAKEVAEQMGKETVVVNEFPG------FVTSR---ISALVGNEAFYMLQEGVATAEDIDKAIRLGL 221 (288)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEecCccc------HHHHH---HHHHHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 8887 899999999999999999999986 44 33332 2346788998887765467888877776543
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=152.79 Aligned_cols=196 Identities=13% Similarity=0.216 Sum_probs=137.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC----cEEEEcCCcchhHHHHHC--CCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+|.||.+++..|.++|+ +|++|+|++++.+.+.+. |+....+..++++++|+||+|+ +++.+.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav-~p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICV-KPLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEec-CHHHHHHHH
Confidence 899999999999999999999984 799999999988887764 6777778888889999999999 567899999
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec--CCHHHHHHHHHHHHH
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNV 152 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--g~~~~~~~~~~ll~~ 152 (291)
+++.+.++++++|++++++. ..+.+.+.+....+.+ .| +.+.....|...+..+ .+.+..+.+.++|+.
T Consensus 80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~--~p--~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~ 150 (273)
T PRK07680 80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARI--IP--SITNRALSGASLFTFGSRCSEEDQQKLERLFSN 150 (273)
T ss_pred ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEE--CC--ChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHc
Confidence 77888887889999988764 3556666554322222 23 2233444565544444 256678899999999
Q ss_pred hccceEeeCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 153 IGKKAFFLGEVG-NGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 153 ~g~~~~~~~~~~-~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
+|..+++..+.. ....+-.+...+.+.++..+.++. .++.|+++++..+++...
T Consensus 151 ~G~~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 151 ISTPLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEM 205 (273)
T ss_pred CCCEEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHH
Confidence 996544433322 222222223344444445444442 244899999888887654
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-19 Score=150.39 Aligned_cols=251 Identities=16% Similarity=0.167 Sum_probs=165.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCC---CcEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG---FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g---~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||..++..|.++| ++|.+|+|++++.+.+.+. |+.+..+..+.+.++|+||+|+ +++.+++++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v-~~~~~~~v~-- 79 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAV-KPQVMEEVL-- 79 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEc-CHHHHHHHH--
Confidence 68999999999999999999998 7899999999998888875 7777788888888999999999 557799998
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEecC--CHHHHHHHHHHHHHh
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAG--EKALYDEAISALNVI 153 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~~ 153 (291)
+.+.+.+ +++|++++++.+. +.+...++ .+..++ .+| ..+.....+...+..+. +++..+.++.+|+.+
T Consensus 80 -~~l~~~~--~~~vvs~~~gi~~--~~l~~~~~-~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~l 151 (267)
T PRK11880 80 -SELKGQL--DKLVVSIAAGVTL--ARLERLLG-ADLPVVRAMP--NTPALVGAGMTALTANALVSAEDRELVENLLSAF 151 (267)
T ss_pred -HHHHhhc--CCEEEEecCCCCH--HHHHHhcC-CCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHHHHHHHHhC
Confidence 6777665 5788888877643 34554443 234455 444 22333333433333333 788889999999999
Q ss_pred ccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC-Ccccccc--ccc-ccccCCCCC
Q 022834 154 GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI-ANPMFKG--KGP-TMLQSNYAP 229 (291)
Q Consensus 154 g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~-~s~~~~~--~~~-~~~~~~~~~ 229 (291)
|..+++..+.......-+..+.. +....++......+.+.|+++++..+++..... ....+.. ..+ .+.+.-.+|
T Consensus 152 G~~~~~~~e~~~d~~~a~~~~~p-a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~tp 230 (267)
T PRK11880 152 GKVVWVDDEKQMDAVTAVSGSGP-AYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNVTSP 230 (267)
T ss_pred CeEEEECChHhcchHHHHhcChH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCC
Confidence 97544442322222222222211 111233333444478899999988887765421 1111111 111 122222344
Q ss_pred CcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 230 AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 230 ~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
|.+. ...++..++.|++-.+.+++.+.++++.+.
T Consensus 231 gG~t-------~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~ 264 (267)
T PRK11880 231 GGTT-------IAALRVLEEKGLRAAVIEAVQAAAKRSKEL 264 (267)
T ss_pred cHHH-------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 4332 346667788999999999999999998875
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=151.28 Aligned_cols=195 Identities=15% Similarity=0.178 Sum_probs=137.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-----C--------------CcccCCHHHHHhhCCEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----G--------------ATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g--------------~~~~~~~~~~~~~~dvvi 61 (291)
+||+|||+|.||..++..|+++|++|++||+++++.+.+.+. + +...++..+++++||+||
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 489999999999999999999999999999999887766541 1 234567777888999999
Q ss_pred EecCCHHHH-HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecC--
Q 022834 62 GMLADPAAA-LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG-- 138 (291)
Q Consensus 62 i~vp~~~~~-~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-- 138 (291)
+|+|.+.+. ..++ +++.+.++++++|+..+++.+ ...+.+.+.. ...++.......+ ..+.++.++.+
T Consensus 85 ~av~~~~~~~~~v~---~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~-~~~~ig~h~~~p~---~~~~l~~i~~g~~ 155 (311)
T PRK06130 85 EAVPEKLELKRDVF---ARLDGLCDPDTIFATNTSGLP--ITAIAQAVTR-PERFVGTHFFTPA---DVIPLVEVVRGDK 155 (311)
T ss_pred EeccCcHHHHHHHH---HHHHHhCCCCcEEEECCCCCC--HHHHHhhcCC-cccEEEEccCCCC---ccCceEEEeCCCC
Confidence 999876554 4455 566666656666655444433 3455554432 2234432222222 22334445544
Q ss_pred -CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 022834 139 -EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 211 (291)
Q Consensus 139 -~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~ 211 (291)
+++.++.+.++++.+|..+++++....+. +++|+ +...++|++.++++.+++++++.+++..+.+.
T Consensus 156 t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~----~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~ 222 (311)
T PRK06130 156 TSPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRI----QHALAREAISLLEKGVASAEDIDEVVKWSLGI 222 (311)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCC
Confidence 68899999999999999888886422222 44554 35789999999999999999999999866543
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=163.38 Aligned_cols=185 Identities=21% Similarity=0.332 Sum_probs=145.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHH-----------HHCC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..||..|+++||+|++||++++.++.. .+.| +..+.+.++ +.+|
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~a 87 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LADC 87 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCCC
Confidence 79999999999999999999999999999999988763 4445 466677766 4599
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEE-EcCCCCHHHHHHHHHHHHh----cCCcEEE-cccCCChHhhcccc
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHETSIKISRAITS----KGGHFLE-APVSGSKQPAETGQ 131 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv-~~s~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~g~ 131 (291)
|+||.|+|++.+++..+| .++....++++++. ++|+..+.. +...+.. .|.+|++ +|+. +
T Consensus 88 DlViEav~E~~~vK~~vf--~~l~~~~~~~ailasntStl~i~~---la~~~~~p~r~~G~hff~Pa~v~---------~ 153 (507)
T PRK08268 88 DLVVEAIVERLDVKQALF--AQLEAIVSPDCILATNTSSLSITA---IAAALKHPERVAGLHFFNPVPLM---------K 153 (507)
T ss_pred CEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCcccEEEEeecCCcccC---------e
Confidence 999999999999999887 45666666778874 677777753 4443322 2667765 4543 4
Q ss_pred eEEEecC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022834 132 LVILSAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 207 (291)
Q Consensus 132 ~~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~ 207 (291)
++.+++| +++.++.+.++++.+|+.++++++ .| ++.|-+. ...+.|++.++++.+.+++++.+++..
T Consensus 154 LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll---~~~~~Ea~~l~~~g~~~~~~iD~al~~ 224 (507)
T PRK08268 154 LVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAA---RPYYTEALRVLEEGVADPATIDAILRE 224 (507)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6667765 889999999999999999999987 56 3445433 458999999999999999999999876
Q ss_pred cCC
Q 022834 208 GGI 210 (291)
Q Consensus 208 ~~~ 210 (291)
+.+
T Consensus 225 ~~G 227 (507)
T PRK08268 225 AAG 227 (507)
T ss_pred cCC
Confidence 443
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=150.16 Aligned_cols=243 Identities=12% Similarity=0.123 Sum_probs=159.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCc---EEEEcCCcchhHHHHHC--CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFK---VTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~---V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|+||.+++..|.+.|++ +.+|+|++++.+.+.+. +...+.++.++++++|+||+|+| ++++.+++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl- 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL- 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 8999999999999999999998864 57899999998888765 46777888888899999999996 68889988
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhcc
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK 155 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~ 155 (291)
+++. +.++++||+++.+ ...+.+.+.+......+..+|.. +.....+ .+.++.++ +.++++|+.+|.
T Consensus 79 --~~l~--~~~~~~vis~~ag--~~~~~l~~~~~~~~~~~r~~P~~--~~a~~~g-~t~~~~~~----~~~~~l~~~lG~ 145 (258)
T PRK06476 79 --RALR--FRPGQTVISVIAA--TDRAALLEWIGHDVKLVRAIPLP--FVAERKG-VTAIYPPD----PFVAALFDALGT 145 (258)
T ss_pred --HHhc--cCCCCEEEEECCC--CCHHHHHHHhCCCCCEEEECCCC--hhhhCCC-CeEecCCH----HHHHHHHHhcCC
Confidence 5552 4578888876544 44566666664433456688852 2222222 23344332 589999999998
Q ss_pred ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCc-cc-c-cc-cc-cccccCCCCCC
Q 022834 156 KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN-PM-F-KG-KG-PTMLQSNYAPA 230 (291)
Q Consensus 156 ~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s-~~-~-~~-~~-~~~~~~~~~~~ 230 (291)
.++...+.......-+ .. ..+....++.++...+++.|+++++..+++......+ .+ . +. .. ..+.+.-.+||
T Consensus 146 ~~~~~~e~~~d~~~a~-~s-~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spg 223 (258)
T PRK06476 146 AVECDSEEEYDLLAAA-SA-LMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKG 223 (258)
T ss_pred cEEECChHhccceeeh-hc-cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCC
Confidence 7664333111111111 11 2233345778888899999999999988887543222 22 1 11 12 13334445666
Q ss_pred cccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 231 FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 231 ~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
.+.. ..++..++.|++-.+.+++.+..++.
T Consensus 224 GtT~-------~gl~~le~~~~~~~~~~a~~aa~~r~ 253 (258)
T PRK06476 224 GLNE-------QVLNDFSRQGGYAALTDALDRVLRRI 253 (258)
T ss_pred chHH-------HHHHHHHHCChHHHHHHHHHHHHHHh
Confidence 5443 34555567777777777766666554
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=158.60 Aligned_cols=184 Identities=20% Similarity=0.260 Sum_probs=140.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHH-----------HHCC-------------CcccCCHHHHHhh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~ 56 (291)
.||+|||+|.||..||..|+++||+|++||++++.++.. .+.| ++.++++++ +.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 479999999999999999999999999999999988653 3334 345667765 469
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEE-EcCCCCHHHHHHHHHHHH----hcCCcEEE-cccCCChHhhccc
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHETSIKISRAIT----SKGGHFLE-APVSGSKQPAETG 130 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv-~~s~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~g 130 (291)
||+||.|+|.+.+++..+| .++....++++++. ++|+..+. ++.+.+. ..|.+|++ +|+.
T Consensus 85 aDlVIEav~E~~~vK~~vf--~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~--------- 150 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALF--AQLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVM--------- 150 (503)
T ss_pred CCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccC---------
Confidence 9999999999999999887 45666676666655 34444443 3333332 23667765 4543
Q ss_pred ceEEEecC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 131 QLVILSAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 131 ~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
+++.+++| +++.++.+.++++.+|+.++++++ .|. +.|-+. ...+.|++.++++.+.+++++.++++
T Consensus 151 ~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf------i~Nrl~---~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 151 ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF------IVNRVA---RPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc------HHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 36678888 899999999999999999999987 552 444332 47999999999999999999999887
Q ss_pred hc
Q 022834 207 LG 208 (291)
Q Consensus 207 ~~ 208 (291)
.+
T Consensus 222 ~~ 223 (503)
T TIGR02279 222 DG 223 (503)
T ss_pred hc
Confidence 64
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-17 Score=136.20 Aligned_cols=154 Identities=16% Similarity=0.193 Sum_probs=121.9
Q ss_pred CeEEEEecChh--------------------hHHHHHHHHhCCCcEEEEcCCcchh-----HHHHHCCCcccCCHHHHHh
Q 022834 1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLSKC-----DELVAHGATVGGSPAEVIK 55 (291)
Q Consensus 1 mkI~iIG~G~m--------------------G~~la~~l~~~g~~V~~~~r~~~~~-----~~l~~~g~~~~~~~~~~~~ 55 (291)
|||.|+|+|+- |..||.+|.++||+|++|||++++. +.+.+.|+..++++.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 89999999986 8999999999999999999987654 4577889999999999999
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHH-H--HhcCCc---EEEcccCCChHhhcc
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRA-I--TSKGGH---FLEAPVSGSKQPAET 129 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~-~--~~~~~~---~~~~~~~~~~~~~~~ 129 (291)
++|+||+|+|++.++++++ .++.+.+++|++|||+||..|....++.+. + ..+++. |+.+.+.|.+...
T Consensus 81 ~ADVVIL~LPd~aaV~eVl---~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~-- 155 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIA---RTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHG-- 155 (341)
T ss_pred CCCEEEEecCCHHHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCc--
Confidence 9999999999999999998 678888889999999999999888777664 2 222332 3333344433221
Q ss_pred cceEEEecC---------CHHHHHHHHHHHHHhccceEeeCC
Q 022834 130 GQLVILSAG---------EKALYDEAISALNVIGKKAFFLGE 162 (291)
Q Consensus 130 g~~~~~~~g---------~~~~~~~~~~ll~~~g~~~~~~~~ 162 (291)
. .+++| ++++.+++-++.+..++.++.+..
T Consensus 156 --~-~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa 194 (341)
T TIGR01724 156 --H-YVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPA 194 (341)
T ss_pred --e-eeeccccccccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 1 12111 788999999999999998877543
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-17 Score=140.94 Aligned_cols=193 Identities=14% Similarity=0.152 Sum_probs=139.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------C---------CCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------H---------GATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~---------g~~~~~~~~~~~~~~dvvi 61 (291)
||+|||+|.||..||..|+.+|++|++||++++..+.+.+ . .+...++.++++++||+|+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlVi 88 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFIQ 88 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEEE
Confidence 7999999999999999999999999999999886654322 2 2355678888889999999
Q ss_pred EecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecC---
Q 022834 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG--- 138 (291)
Q Consensus 62 i~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--- 138 (291)
.|+|...+++..+| .++.+..+++++|. .||+ +....++.+.+.. .-.++....+.++. .-+++-++.+
T Consensus 89 EavpE~l~vK~~lf--~~l~~~~~~~aIla-SnTS-~l~~s~la~~~~~-p~R~~g~HffnP~~---~~pLVEVv~g~~T 160 (321)
T PRK07066 89 ESAPEREALKLELH--ERISRAAKPDAIIA-SSTS-GLLPTDFYARATH-PERCVVGHPFNPVY---LLPLVEVLGGERT 160 (321)
T ss_pred ECCcCCHHHHHHHH--HHHHHhCCCCeEEE-ECCC-ccCHHHHHHhcCC-cccEEEEecCCccc---cCceEEEeCCCCC
Confidence 99999999999887 67888887777444 3333 3334455554432 22344333232222 2234445554
Q ss_pred CHHHHHHHHHHHHHhccceEeeC-C-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 022834 139 EKALYDEAISALNVIGKKAFFLG-E-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 211 (291)
Q Consensus 139 ~~~~~~~~~~ll~~~g~~~~~~~-~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~ 211 (291)
+++..+.+.+++..+|+.++.+. + +| ++.|= ...+++.|++.+.+.-..+++++-.++..+.+.
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pG------Fi~NR---l~~a~~~EA~~lv~eGvas~edID~a~~~g~g~ 226 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPG------FIADR---LLEALWREALHLVNEGVATTGEIDDAIRFGAGI 226 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCcc------HHHHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 78899999999999999888874 4 44 33332 345788999999888778999999988876554
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=141.04 Aligned_cols=244 Identities=14% Similarity=0.162 Sum_probs=161.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC----cEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||.+++..|.+++. ++++++|++++. +.....++.+.++++|+||+|+ +++++++++
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilav-kp~~~~~vl-- 74 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAV-KPDLAGKVL-- 74 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEe-CHHHHHHHH--
Confidence 899999999999999999998872 499999876542 3344567778888999999999 678899999
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecC---CHHHHHHHHHHHHHh
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG---EKALYDEAISALNVI 153 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~~~~~~~ll~~~ 153 (291)
+++.+.+.++.+|.+++..... .+...+......+...| +.+.....+.. .++.. +++..+.+.++|+.+
T Consensus 75 -~~i~~~l~~~~iIS~~aGi~~~---~l~~~~~~~~~vvr~mP--n~p~~~g~g~t-~i~~~~~~~~~~~~~v~~l~~~~ 147 (260)
T PTZ00431 75 -LEIKPYLGSKLLISICGGLNLK---TLEEMVGVEAKIVRVMP--NTPSLVGQGSL-VFCANNNVDSTDKKKVIDIFSAC 147 (260)
T ss_pred -HHHHhhccCCEEEEEeCCccHH---HHHHHcCCCCeEEEECC--CchhHhcceeE-EEEeCCCCCHHHHHHHHHHHHhC
Confidence 7787777554444444444433 34444432211122333 22333333332 23332 566788999999999
Q ss_pred ccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC-Ccccccc--ccc-ccccCCCC
Q 022834 154 GKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI-ANPMFKG--KGP-TMLQSNYA 228 (291)
Q Consensus 154 g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~-~s~~~~~--~~~-~~~~~~~~ 228 (291)
|..++.-.+ +.....+--+...+.+.++..+.++ +.+.|++.++..+++..... ...++.. ..+ .+.+.-.+
T Consensus 148 G~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~s 224 (260)
T PTZ00431 148 GIIQEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCS 224 (260)
T ss_pred CcEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCC
Confidence 987665443 5555555555666766666766666 88899999999998876532 2223322 222 44445556
Q ss_pred CCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 229 PAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 229 ~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
||.+... .++..++.|++--+.+++.+..+++.+.
T Consensus 225 pgG~T~~-------gl~~le~~g~~~~~~~a~~aa~~r~~~l 259 (260)
T PTZ00431 225 PGGITIV-------GLYTLEKHAFKYTVMDAVESACQKSKSM 259 (260)
T ss_pred CChHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHhc
Confidence 7665443 4555567888888888888888877653
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=140.68 Aligned_cols=190 Identities=19% Similarity=0.231 Sum_probs=137.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHH-----------HHHCC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-----------LVAHG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~-----------l~~~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..||..|+.+||+|++||++++.++. +.+.| ++.+++. +.+++|
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~ 85 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADR 85 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCC
Confidence 7999999999999999999999999999999998776 33333 2256677 557899
Q ss_pred CEEEEecCCHHHHHHHHhccCcccccc-CCCcEEEEcCCCCHHHHHHHHHHHHhc--CCcEEEc-ccCCChHhhcccceE
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQI-CPGKGYIDMSTVDHETSIKISRAITSK--GGHFLEA-PVSGSKQPAETGQLV 133 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l-~~~~~vv~~s~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~g~~~ 133 (291)
|+||.|+|.+.+++..+| ..+.+.. ++++++++.|+..|.+........+++ +.+|... |+.+. -+++
T Consensus 86 d~ViEav~E~~~~K~~l~--~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~l------vElv 157 (286)
T PRK07819 86 QLVIEAVVEDEAVKTEIF--AELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPL------VELV 157 (286)
T ss_pred CEEEEecccCHHHHHHHH--HHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCce------EEEe
Confidence 999999999999999887 4566666 789999988888776544333223333 4444432 22111 1222
Q ss_pred EEecCCHHHHHHHHHHHH-HhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022834 134 ILSAGEKALYDEAISALN-VIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG 209 (291)
Q Consensus 134 ~~~~g~~~~~~~~~~ll~-~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~ 209 (291)
....++++.++.+.+++. .+|+.++.+++ +| ++.|= .....++|+..+.++.-.+++++-.++..+.
T Consensus 158 ~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~nR---i~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~ 226 (286)
T PRK07819 158 PTLVTSEATVARAEEFASDVLGKQVVRAQDRSG------FVVNA---LLVPYLLSAIRMVESGFATAEDIDKAMVLGC 226 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCceEecCCCC------hHHHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 233458999999999988 59999988876 54 22232 2457788999888766577888877776553
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=139.79 Aligned_cols=246 Identities=12% Similarity=0.164 Sum_probs=160.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCC----CcEEEEcCCc-chhHHHHHC--CCcccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTL-SKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g----~~V~~~~r~~-~~~~~l~~~--g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
|||+|||+|.||.+++..|.++| ++|++|+|++ ++.+.+... +.....+..++++++|+||+|+| ++.+.++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 68999999999999999999988 7899999864 445555443 34455677888889999999995 6789999
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEE-EecC---CHHHHHHHHH
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVI-LSAG---EKALYDEAIS 148 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~g---~~~~~~~~~~ 148 (291)
+ +++.+.+.++++||+++++... .++.+.++. ..++ .+| +.....|..+. ++.+ +++..+.++.
T Consensus 81 l---~~l~~~l~~~~~ivS~~aGi~~--~~l~~~~~~--~~vvR~MP----N~~~~~g~g~t~~~~~~~~~~~~~~~v~~ 149 (277)
T PRK06928 81 L---KDCAPVLTPDRHVVSIAAGVSL--DDLLEITPG--LQVSRLIP----SLTSAVGVGTSLVAHAETVNEANKSRLEE 149 (277)
T ss_pred H---HHHHhhcCCCCEEEEECCCCCH--HHHHHHcCC--CCEEEEeC----ccHHHHhhhcEEEecCCCCCHHHHHHHHH
Confidence 9 7787777778888888776443 356655542 2343 667 55555444433 3332 5667889999
Q ss_pred HHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhcCCCc-cccc--cccc-cc
Q 022834 149 ALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS-GLDPRTLLDVLDLGGIAN-PMFK--GKGP-TM 222 (291)
Q Consensus 149 ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~-g~~~~~~~~~~~~~~~~s-~~~~--~~~~-~~ 222 (291)
+|+.+|..+++-.+ +....++--+...+.+.++..+.++ +.+. |+++++..+++..+...+ .++. ...+ .+
T Consensus 150 l~~~~G~~~~v~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~~p~~l 226 (277)
T PRK06928 150 TLSHFSHVMTIREENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGT 226 (277)
T ss_pred HHHhCCCEEEEchhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHH
Confidence 99999987655433 5444554445556655666666666 6777 799998888887653222 2221 1222 34
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 223 LQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 223 ~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
.+.-.+||.+....+. ..++ |++--+.+++.+..++..+
T Consensus 227 ~~~v~spgGtT~~gl~-------~le~-~~~~~~~~~~~~a~~r~~~ 265 (277)
T PRK06928 227 IERVATKGGITAEGAE-------VIQA-QLPQFFDELLDRTQKKYAS 265 (277)
T ss_pred HHhCCCCChHHHHHHH-------HHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4444567655443322 2232 5555555555555555443
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-16 Score=133.08 Aligned_cols=174 Identities=19% Similarity=0.271 Sum_probs=134.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhH--HHHHCCCccc--CCH-HHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD--ELVAHGATVG--GSP-AEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~--~l~~~g~~~~--~~~-~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|+|+|+|+|.||.++++.|.++|+.|.+++++..... ...+.|+... .+. .+...++|+||+|||- ..+.+++
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l- 81 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL- 81 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH-
Confidence 6899999999999999999999999877766554433 3333444322 222 4566779999999965 6788898
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCC--hHhhcccceEEEecC---CHHHHHHHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGS--KQPAETGQLVILSAG---EKALYDEAISA 149 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~g~~~~~~~g---~~~~~~~~~~l 149 (291)
+++.+.++++.+|.|.++......+.+.+..++.. .|+ .+|++|+ ......+...+++.+ +.+.++.+.++
T Consensus 82 --~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~ 158 (279)
T COG0287 82 --KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRL 158 (279)
T ss_pred --HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHH
Confidence 88998999999999999998888888887776655 788 8999998 445556666666655 45678889999
Q ss_pred HHHhccceEeeCCCChhHHHHHHHHHHHHH
Q 022834 150 LNVIGKKAFFLGEVGNGAKMKLVVNMIMGC 179 (291)
Q Consensus 150 l~~~g~~~~~~~~~~~a~~~k~~~n~~~~~ 179 (291)
++.+|.+++.+....+...+-.++.+.-..
T Consensus 159 ~~~~ga~~v~~~~eeHD~~~a~vshLpH~~ 188 (279)
T COG0287 159 WEALGARLVEMDAEEHDRVMAAVSHLPHAA 188 (279)
T ss_pred HHHcCCEEEEcChHHHhHHHHHHHHHHHHH
Confidence 999999999998878888877776654333
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-16 Score=139.26 Aligned_cols=194 Identities=16% Similarity=0.176 Sum_probs=140.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc----cCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~----~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++|+|||+|.||.+++..|.++|++|.+|+++++..+.....+..+ ..+..+++++||+||+|+|. ..+.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl-- 77 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALL-- 77 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHH--
Confidence 4899999999999999999999999999999887655544444332 34567788899999999976 5688888
Q ss_pred cCcccc-ccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE-cccCCChH--------hhcccceEEEec---CCHHHH
Q 022834 77 KGGVLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSGSKQ--------PAETGQLVILSA---GEKALY 143 (291)
Q Consensus 77 ~~~l~~-~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~g~~~~~~~---g~~~~~ 143 (291)
+++.+ .++++.+|.|.++......+.+...+ ..+..|+. +|+.|... ....+...+++. .+.+.+
T Consensus 78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~ 155 (359)
T PRK06545 78 -AELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAV 155 (359)
T ss_pred -HHHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHH
Confidence 77776 37788999999999887777776543 34567885 88888631 223455455554 367889
Q ss_pred HHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 144 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 144 ~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
+.+.++++.+|..++++++......+.+++.+..... +++ +...+.+.+....+..
T Consensus 156 ~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia-----~al--~~~~~~~~~~~~~la~ 211 (359)
T PRK06545 156 AELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILA-----SSL--AARLAGEHPLALRLAA 211 (359)
T ss_pred HHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHH-----HHH--HHhhccCchHHHhhhc
Confidence 9999999999999888887777777777776653333 222 3444555554444444
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-16 Score=136.87 Aligned_cols=172 Identities=17% Similarity=0.278 Sum_probs=130.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHCCC--cccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGA--TVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||..++..|.+.|+ +|++|+|++++.+.+.+.|. ....+..+.++++|+||+|+|. ....+++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~-~~~~~v~-- 83 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPV-GASGAVA-- 83 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCH-HHHHHHH--
Confidence 589999999999999999999985 89999999988888877764 2445677788899999999976 5567777
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE-cccCCChH-h-------hcccceEEEe---cCCHHHHH
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSGSKQ-P-------AETGQLVILS---AGEKALYD 144 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-------~~~g~~~~~~---~g~~~~~~ 144 (291)
+++.+.++++.+|+++++......+.+...+. .++.|+. +|+.|+.. . ...|...+++ +++.+.++
T Consensus 84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~ 161 (307)
T PRK07502 84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVA 161 (307)
T ss_pred -HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHH
Confidence 66777788889999998887777666655443 3567884 58876432 1 1133333343 34778889
Q ss_pred HHHHHHHHhccceEeeCCCChhHHHHHHHHHHH
Q 022834 145 EAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 177 (291)
Q Consensus 145 ~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~ 177 (291)
.+.++++.+|.+++++++......+-++..+..
T Consensus 162 ~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph 194 (307)
T PRK07502 162 RLTAFWRALGARVEEMDPEHHDLVLAITSHLPH 194 (307)
T ss_pred HHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHH
Confidence 999999999999988887666777666666543
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-17 Score=139.67 Aligned_cols=185 Identities=18% Similarity=0.267 Sum_probs=131.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHH-----------HHHCC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-----------LVAHG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~-----------l~~~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..|+..|+++|++|++||+++++++. +.+.| ....++ .+.+++|
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~a 84 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTN-LEELRDA 84 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCC-HHHhCCC
Confidence 7999999999999999999999999999999887653 33322 223334 4567899
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEE-EcCCCCHHHHHHHHHHHHh----cCCcEEEcccCCChHhhcccce
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHETSIKISRAITS----KGGHFLEAPVSGSKQPAETGQL 132 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv-~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~ 132 (291)
|+||+|+|.+.+++..++ .++.+.++++++|+ ++|+..+.. +.+.+.. .+++|.+.|.. +.+
T Consensus 85 D~Vieav~e~~~~k~~v~--~~l~~~~~~~~il~s~tS~i~~~~---l~~~~~~~~r~~g~h~~~pp~~--------~~l 151 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLF--SELDRICKPSAILASNTSSISITR---LASATQRPQQVIGMHFMNPPPI--------MKL 151 (295)
T ss_pred CEEEEcCccCHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcceEEEeccCCccc--------Cce
Confidence 999999998888887766 55777777888876 455665544 3333322 13444444432 234
Q ss_pred EEEecC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 133 VILSAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 133 ~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
+.++.+ +++.++.+.++|+.+|+.++++++ .| . +.+. .+...+.|++.+.+....+++++-..+..+
T Consensus 152 veiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g--~---i~nr----i~~~~~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 152 VEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG--F---IVNR----ILMPMINEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc--H---HHHH----HHHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 445543 888999999999999999988877 44 1 2222 345678999998887667888887776654
Q ss_pred C
Q 022834 209 G 209 (291)
Q Consensus 209 ~ 209 (291)
.
T Consensus 223 ~ 223 (295)
T PLN02545 223 T 223 (295)
T ss_pred c
Confidence 3
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=135.88 Aligned_cols=186 Identities=17% Similarity=0.283 Sum_probs=129.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC-------------CcccCCHHHHHhh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~ 56 (291)
+||+|||+|.||..++..|+++|++|++||+++++++.+.+ .| +...++.+ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 48999999999999999999999999999999988766432 23 34455664 4679
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEE-cCCCCHHHHHHHHHHHHhc----CCcEEE-cccCCChHhhccc
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYID-MSTVDHETSIKISRAITSK----GGHFLE-APVSGSKQPAETG 130 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~g 130 (291)
||+||+|+|.+.+++..++ +++.+.++++++++. +|+..+. .+.+.+... +++|++ .|+. +
T Consensus 84 aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~--------~ 150 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVM--------K 150 (292)
T ss_pred CCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccC--------c
Confidence 9999999998777666555 577788888888874 4444432 455443211 344444 1211 1
Q ss_pred ceEEE--ecCCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 131 QLVIL--SAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 131 ~~~~~--~~g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
-..++ .+++++.++.+.++++.+|+.++++++.. -++.+++ ....+.|++.+.++.-.+++++-.++..+
T Consensus 151 ~vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl----~~~~~~ea~~~~~~g~~~~~~iD~~~~~g 222 (292)
T PRK07530 151 LVELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRI----LLPMINEAIYTLYEGVGSVEAIDTAMKLG 222 (292)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHH----HHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 11122 24689999999999999999999887733 2333343 36778888888777445788887777644
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-16 Score=134.16 Aligned_cols=194 Identities=15% Similarity=0.207 Sum_probs=133.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-------------------------CCCcccCCHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------------HGATVGGSPAEVIK 55 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-------------------------~g~~~~~~~~~~~~ 55 (291)
+||+|||+|.||..+|..|+++|++|++||+++++++.+.+ .++...++.+++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 48999999999999999999999999999999887665432 12345678888889
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEE
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVIL 135 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 135 (291)
++|+||+|+|.+.+++..++ +++.+.++++++|++.++..+. .++.+.+. +.-.|+....+.+ ....++..+
T Consensus 84 ~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~--~~~~~~~~-~~~r~vg~Hf~~p---~~~~~lvev 155 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLLP--SQFAEATG-RPEKFLALHFANE---IWKNNTAEI 155 (287)
T ss_pred CCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCCH--HHHHhhcC-CcccEEEEcCCCC---CCcCCeEEE
Confidence 99999999998765555443 6677777778877655544322 22333322 2234554332222 223344445
Q ss_pred ec---CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022834 136 SA---GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG 209 (291)
Q Consensus 136 ~~---g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~ 209 (291)
+. .+++.++.+.+++..+|+.++.+.....+..... .....+.|++.+.+....+++++-.++..+.
T Consensus 156 v~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nR-------i~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~ 225 (287)
T PRK08293 156 MGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNS-------LLVPFLSAALALWAKGVADPETIDKTWMIAT 225 (287)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHH-------HHHHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 43 4788999999999999998887753233333322 2346788999988776678998887776543
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-16 Score=133.63 Aligned_cols=170 Identities=12% Similarity=0.173 Sum_probs=128.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHH-hhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+|.||..++..|.+.|++|++|++++. .+...+.|+....+.++++ .++|+||+|+|. ..+.+++ ++
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl---~~ 111 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVL---RS 111 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHH---Hh
Confidence 6899999999999999999999999999999864 3444455777677787776 469999999965 6788888 67
Q ss_pred c-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHh--hcccceEEEec-------CCHHHHHHHHH
Q 022834 80 V-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQP--AETGQLVILSA-------GEKALYDEAIS 148 (291)
Q Consensus 80 l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~g~~~~~~~-------g~~~~~~~~~~ 148 (291)
+ .+.++++++|+|++++.....+.+.+.++. +..|+ .+|++|.... ...+...+... .+++..+.+.+
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 190 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLD 190 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHH
Confidence 7 566778999999999877777777766543 45677 8898887643 22233323322 25677889999
Q ss_pred HHHHhccceEeeCCCChhHHHHHHHHHH
Q 022834 149 ALNVIGKKAFFLGEVGNGAKMKLVVNMI 176 (291)
Q Consensus 149 ll~~~g~~~~~~~~~~~a~~~k~~~n~~ 176 (291)
+++.+|.+++.+....+...+-.++.+.
T Consensus 191 l~~~lGa~v~~~~~eeHD~~vA~iShLp 218 (304)
T PLN02256 191 IFEEEGCRMVEMSCEEHDRYAAGSQFIT 218 (304)
T ss_pred HHHHCCCEEEEeCHHHHhHHHHhhhhHH
Confidence 9999999999998877776665555443
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-16 Score=130.34 Aligned_cols=193 Identities=15% Similarity=0.147 Sum_probs=133.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC---c-EEEEcC-CcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF---K-VTVWNR-TLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~---~-V~~~~r-~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+|.||.+++..|.++|+ + +++++| ++++.+.+.+. ++..+.+.+++++++|+||+|+|+ +.+++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~v~ 83 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEELL 83 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHHHH
Confidence 589999999999999999998863 3 677887 46777777654 777777888888999999999966 5678888
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE-EEcccCCChHhhc--ccceEEEec--CCHHHHHHHHHH
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF-LEAPVSGSKQPAE--TGQLVILSA--GEKALYDEAISA 149 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~g~~~~~~~--g~~~~~~~~~~l 149 (291)
+++.+.++ +++||+++.+... +.+.+.+.. +..+ ..+| +.... .+...+.++ .+++..+.++++
T Consensus 84 ---~~l~~~~~-~~~vis~~~gi~~--~~l~~~~~~-~~~v~r~~P----n~a~~v~~g~~~~~~~~~~~~~~~~~v~~l 152 (245)
T PRK07634 84 ---AELSPLLS-NQLVVTVAAGIGP--SYLEERLPK-GTPVAWIMP----NTAAEIGKSISLYTMGQSVNETHKETLQLI 152 (245)
T ss_pred ---HHHHhhcc-CCEEEEECCCCCH--HHHHHHcCC-CCeEEEECC----cHHHHHhcCCeEEeeCCCCCHHHHHHHHHH
Confidence 67776664 6788988777543 345555532 2223 3556 33333 343333333 377888999999
Q ss_pred HHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 150 LNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 150 l~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
|+.+|..++.-.+ .....++--+...+.+.++..+.++ +.+.|+++++..+++...
T Consensus 153 f~~~G~~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 153 LKGIGTSQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYGVDEETAKHLVIQM 209 (245)
T ss_pred HHhCCCEEEECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHH
Confidence 9999988764333 4444444344444544445555555 889999999888887754
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-16 Score=133.32 Aligned_cols=185 Identities=17% Similarity=0.261 Sum_probs=129.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH--------------CCC-------------cccCCHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--------------HGA-------------TVGGSPAEVI 54 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~--------------~g~-------------~~~~~~~~~~ 54 (291)
||+|||+|.||..++..|+++|++|++||+++++++...+ .|. ...++. +.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 83 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ESL 83 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HHh
Confidence 7999999999999999999999999999999988764321 121 233344 567
Q ss_pred hhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEE-cccCCChHhhcc
Q 022834 55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLE-APVSGSKQPAET 129 (291)
Q Consensus 55 ~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~ 129 (291)
++||+||+|+|.+..++..++ +++.+.++++++++..+++. ...++.+.+... +.+|.. +++.+
T Consensus 84 ~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~------- 152 (291)
T PRK06035 84 SDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMK------- 152 (291)
T ss_pred CCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCc-------
Confidence 899999999998776555554 56777777788877555443 334555544322 333332 22221
Q ss_pred cceEEEecC---CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 130 GQLVILSAG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 130 g~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
++-++.+ +++.++.+.++++.+|+.++++++.......|++.| .+.|++.+.+.--.+++++-.++.
T Consensus 153 --~vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~a~~~~iD~~~~ 222 (291)
T PRK06035 153 --LIEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGIATIKDIDEMCK 222 (291)
T ss_pred --cEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCCCCHHHHHHHHh
Confidence 1122222 788999999999999999999988666666666655 467888877653357888877776
Q ss_pred hc
Q 022834 207 LG 208 (291)
Q Consensus 207 ~~ 208 (291)
.+
T Consensus 223 ~~ 224 (291)
T PRK06035 223 LA 224 (291)
T ss_pred hc
Confidence 54
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=129.37 Aligned_cols=188 Identities=18% Similarity=0.223 Sum_probs=129.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhH-----------HHHHCC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD-----------ELVAHG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~-----------~l~~~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..++..|+++|++|++||+++++++ .+.+.| +..+++.+ .+++|
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~a 83 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKDA 83 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccC
Confidence 799999999999999999999999999999998874 233333 23345554 47899
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEe
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILS 136 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~ 136 (291)
|+||+|+|++..++..++ +++.+.++++++++..+++.+. ..+.+.+... -.++ .+|.. +....+.+.++
T Consensus 84 DlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s~ts~~~~--~~la~~~~~~-~r~ig~h~~~----P~~~~~~vev~ 154 (282)
T PRK05808 84 DLVIEAATENMDLKKKIF--AQLDEIAKPEAILATNTSSLSI--TELAAATKRP-DKVIGMHFFN----PVPVMKLVEII 154 (282)
T ss_pred CeeeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhhCCC-cceEEeeccC----CcccCccEEEe
Confidence 999999988777774443 6788888788887554444332 3555555322 2344 33321 11222222333
Q ss_pred c---CCHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 137 A---GEKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 137 ~---g~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
. .+++..+.+.++++.+|+.++++++ .| ++.| -.+..++.|+..+.++.-.+++++-..+..+
T Consensus 155 ~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g------~i~~---Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g 221 (282)
T PRK05808 155 RGLATSDATHEAVEALAKKIGKTPVEVKNAPG------FVVN---RILIPMINEAIFVLAEGVATAEDIDEGMKLG 221 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeEEecCccC------hHHH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 2 3789999999999999999998876 33 2222 2345778899988877557788887777654
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=130.14 Aligned_cols=163 Identities=20% Similarity=0.274 Sum_probs=114.8
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--------CCc---ccCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------GAT---VGGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------g~~---~~~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+||| +|.||.+++..|+++||+|++|+|++++.+.+.+. |.. ...+..+.++++|+||+|+| ++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp-~~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVP-WD 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECC-HH
Confidence 8999997 89999999999999999999999999888776542 221 12356678889999999994 57
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHH---------------HHHHHHHHHHhcCCcEE-Ecc-----cCCChHhh
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHE---------------TSIKISRAITSKGGHFL-EAP-----VSGSKQPA 127 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~---------------~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~ 127 (291)
++.+++ +++.+.+ ++++||+++++.+. ..+.+.+.++. +.+++ ..+ +.... ..
T Consensus 80 ~~~~~l---~~l~~~l-~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~-~~ 153 (219)
T TIGR01915 80 HVLKTL---ESLRDEL-SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDV-DD 153 (219)
T ss_pred HHHHHH---HHHHHhc-cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCC-CC
Confidence 788888 6666656 45899999887542 12445555543 12333 222 11211 12
Q ss_pred cccceEEEecCCHHHHHHHHHHHHHh-ccceEeeCCCChhHHHH
Q 022834 128 ETGQLVILSAGEKALYDEAISALNVI-GKKAFFLGEVGNGAKMK 170 (291)
Q Consensus 128 ~~g~~~~~~~g~~~~~~~~~~ll~~~-g~~~~~~~~~~~a~~~k 170 (291)
..+..+++++.++++.+.+.++.+.+ |++++.+|++..+..+-
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e 197 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVE 197 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHH
Confidence 22344456677788889999999999 99999998866554443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=131.74 Aligned_cols=241 Identities=15% Similarity=0.132 Sum_probs=156.3
Q ss_pred hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc--------------cCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------GGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 10 ~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~--------------~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
.||+.+|..|+++||+|++++|+ ++.+.+.+.|..+ .+++++ ...+|+||+|| +..++++++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~v-Ks~~~~~~l- 76 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITV-KAYQTEEAA- 76 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEec-cchhHHHHH-
Confidence 48999999999999999999997 7777887665321 222333 45789999999 557889998
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC----CcEEEcccCCChHhhcccceEEEecC---CHHHHHHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG----GHFLEAPVSGSKQPAETGQLVILSAG---EKALYDEAIS 148 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~~~~~~~ 148 (291)
+.+.+.+.++++|+.+.++... .+.+.+.+.... +.+..+-..++......+...+.++. ..+..+.+.+
T Consensus 77 --~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~ 153 (293)
T TIGR00745 77 --ALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAE 153 (293)
T ss_pred --HHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHH
Confidence 7888888888999988887432 244555454321 22222222222212222222233333 2245677888
Q ss_pred HHHHhccceEeeCCCChhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcCCCHH--HHHHHH
Q 022834 149 ALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSGLDPR--TLLDVL 205 (291)
Q Consensus 149 ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~---------------------~~~~~E~~~~~~~~g~~~~--~~~~~~ 205 (291)
+|+..+..+....++....|.|++.|+..+.. ..++.|+..++++.|+++. .+.+.+
T Consensus 154 ~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~ 233 (293)
T TIGR00745 154 LLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEELV 233 (293)
T ss_pred HHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 89888888888888999999999999765542 3467799999999887543 233333
Q ss_pred hh----cC-CCcccccccc-cccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 022834 206 DL----GG-IANPMFKGKG-PTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKAR 268 (291)
Q Consensus 206 ~~----~~-~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 268 (291)
.. .. ..++|+++.. .+..+-+ -=.+++++.|+++|+++|.++.++++++...
T Consensus 234 ~~~~~~~~~~~sSm~~D~~~gr~tEid-----------~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~e 291 (293)
T TIGR00745 234 RAVIRMTAENTSSMLQDLLRGRRTEID-----------AINGAVVRLAEKLGIDAPVNRTLYALLKALE 291 (293)
T ss_pred HHHHhcCCCCCChHHHHHHcCCcchHH-----------HhccHHHHHHHHcCCCCChHHHHHHHHHHhh
Confidence 21 11 1223332211 0111111 1136789999999999999999999887543
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=125.50 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=95.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--------------------CCcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+|.+|..+|..|+++||+|+++|.++++.+.+++. +...+++.++++.++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 999999999999999999999999999999999998887652 234567788888999999
Q ss_pred EEecCCHH---------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHH-HHHhcC-----CcEEEcccC---C
Q 022834 61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISR-AITSKG-----GHFLEAPVS---G 122 (291)
Q Consensus 61 ii~vp~~~---------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~---~ 122 (291)
|+|||++. .+++++ +.+.+.++++++||..||..|.+.+++.. .+.+.+ +.+..+|-+ |
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G 157 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG 157 (185)
T ss_dssp EE----EBETTTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred EEecCCCccccCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence 99998663 577777 78888898999999999999999996554 444333 234466633 3
Q ss_pred ChHhhcccceEEEecCCHH-HHHHHHH
Q 022834 123 SKQPAETGQLVILSAGEKA-LYDEAIS 148 (291)
Q Consensus 123 ~~~~~~~g~~~~~~~g~~~-~~~~~~~ 148 (291)
...........++.|.+++ ..+.+++
T Consensus 158 ~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 158 RAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp SHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 3333223333345554443 3335544
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-16 Score=122.72 Aligned_cols=165 Identities=16% Similarity=0.202 Sum_probs=114.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc-hhHHHHHC-CCc-ccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAH-GAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~-g~~-~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|+|+|+|+|+||.+++++|+++||+|++.+|+.+ +.+...+. +.. ...+++++++.+|+||++||. .++.+++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~-~a~~~v~--- 77 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF-EAIPDVL--- 77 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH-HHHHhHH---
Confidence 7899999999999999999999999999965554 44444332 322 235788899999999999977 6678888
Q ss_pred CccccccCCCcEEEEcCCCC---------------HHHHHHHHHHHHhcC----CcEEEcccCCChHhhcccceEEEecC
Q 022834 78 GGVLEQICPGKGYIDMSTVD---------------HETSIKISRAITSKG----GHFLEAPVSGSKQPAETGQLVILSAG 138 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~---------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~g 138 (291)
.++...+ .+++|||.++.. .+..+.+.+.++... ++-+.+..............+.+++.
T Consensus 78 ~~l~~~~-~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vagD 156 (211)
T COG2085 78 AELRDAL-GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAGD 156 (211)
T ss_pred HHHHHHh-CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEecC
Confidence 6777777 589999998851 123445555554431 11222222211111112334456777
Q ss_pred CHHHHHHHHHHHHHhccceEeeCCCChhHHHH
Q 022834 139 EKALYDEAISALNVIGKKAFFLGEVGNGAKMK 170 (291)
Q Consensus 139 ~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k 170 (291)
|.++.+.+.++.+.+|.+.+.+|+...+..+-
T Consensus 157 D~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le 188 (211)
T COG2085 157 DAEAKAVVAELAEDIGFRPLDAGPLENARILE 188 (211)
T ss_pred cHHHHHHHHHHHHhcCcceeeccccccccccc
Confidence 88899999999999999999998866554443
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-15 Score=140.03 Aligned_cols=163 Identities=12% Similarity=0.197 Sum_probs=120.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHh-hCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+|.||..++..|.+.|++|++|+|+.+. +...+.|+....+.++++. ++|+||+|||. ..+.+++ ++
T Consensus 370 ~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi---~~ 444 (667)
T PLN02712 370 LKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL---KS 444 (667)
T ss_pred CEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH---HH
Confidence 79999999999999999999999999999998543 4455667776778888775 58999999975 6788888 56
Q ss_pred ccc-ccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhccc--ceE-----EEecCCH---HHHHHHH
Q 022834 80 VLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETG--QLV-----ILSAGEK---ALYDEAI 147 (291)
Q Consensus 80 l~~-~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g--~~~-----~~~~g~~---~~~~~~~ 147 (291)
+.. .++++++|+|++++.....+.+.+.++ .+..|+ .+|++|.... ..| ... .+++++. +..+.+.
T Consensus 445 l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~ 522 (667)
T PLN02712 445 LPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSFL 522 (667)
T ss_pred HHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHHH
Confidence 654 467899999999997656666665543 366788 9999997654 112 111 2233433 3345667
Q ss_pred HHHHHhccceEeeCCCChhHHHH
Q 022834 148 SALNVIGKKAFFLGEVGNGAKMK 170 (291)
Q Consensus 148 ~ll~~~g~~~~~~~~~~~a~~~k 170 (291)
++++.+|.+++.+....+...+-
T Consensus 523 ~l~~~lGa~vv~ms~eeHD~~~A 545 (667)
T PLN02712 523 DIFAREGCRMVEMSCAEHDWHAA 545 (667)
T ss_pred HHHHHcCCEEEEeCHHHHHHHHH
Confidence 99999999999888766665554
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=139.50 Aligned_cols=182 Identities=14% Similarity=0.170 Sum_probs=135.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHHCCCc--ccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHGAT--VGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
.||+|||+|.||.+++..|.++| ++|++||+++++.+.+.+.|.. ...+..++++++|+||+|+|. ..+.+++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl-- 80 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPV-LAMEKVL-- 80 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCH-HHHHHHH--
Confidence 38999999999999999999998 4799999999988887777764 345677778899999999965 6788888
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHh--------hcccceEEEec---CCHHHHH
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQP--------AETGQLVILSA---GEKALYD 144 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~g~~~~~~~---g~~~~~~ 144 (291)
+++.+.++++.+|+++++......+.+.+.+....+.|+ .+|+.|+... ...+...+++. .+++..+
T Consensus 81 -~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 159 (735)
T PRK14806 81 -ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALA 159 (735)
T ss_pred -HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHH
Confidence 778787878889999999888777888776654455666 7888765421 12343444443 3677888
Q ss_pred HHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 022834 145 EAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEG 187 (291)
Q Consensus 145 ~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~ 187 (291)
.+.++|+.+|.+++++++......+-+++.... .....+.|+
T Consensus 160 ~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph-~~~~~l~~~ 201 (735)
T PRK14806 160 RVDRLWRAVGADVLHMDVAHHDEVLAATSHLPH-LLAFSLVDQ 201 (735)
T ss_pred HHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHH-HHHHHHHHH
Confidence 999999999988888876555555555544432 233444444
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-16 Score=121.13 Aligned_cols=136 Identities=18% Similarity=0.223 Sum_probs=97.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC--------------CcccCCHHHHHhhCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
||+|||+|+||+++|..|+++||+|++|.|+++..+.+.+.+ +.++++++++++++|+|++++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 799999999999999999999999999999999988887632 34577889999999999999976
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCC-HH----HHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHH
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVD-HE----TSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKA 141 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 141 (291)
..+++++ +++.+++++++.++.++.+. +. ..+.+.+.+....+.++..|.+...........+.+.+.+.+
T Consensus 80 ~~~~~~~---~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 80 QAHREVL---EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp GGHHHHH---HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred HHHHHHH---HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 6689999 89999998999999988774 22 234444445444455667776665555555554445554543
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-16 Score=111.61 Aligned_cols=90 Identities=24% Similarity=0.425 Sum_probs=76.9
Q ss_pred eEEEEecChhhHHHHHHHHhCC---CcEEEE-cCCcchhHHHHHC-CCcccC-CHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG---FKVTVW-NRTLSKCDELVAH-GATVGG-SPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g---~~V~~~-~r~~~~~~~l~~~-g~~~~~-~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
||+|||+|+||.+|++.|.++| ++|+++ +|++++.+.+.++ +..... +..++++++|+||+|| +++++.+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav-~p~~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAV-KPQQLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGGHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEE-CHHHHHHHH-
Confidence 7999999999999999999999 899955 9999999998755 666666 8899999999999999 668899999
Q ss_pred ccCccccccCCCcEEEEcCCC
Q 022834 76 DKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+++ +...+++++|+++++
T Consensus 79 --~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 --SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp --HHH-HHHHTTSEEEEESTT
T ss_pred --HHH-hhccCCCEEEEeCCC
Confidence 777 666799999988753
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=134.83 Aligned_cols=170 Identities=11% Similarity=0.158 Sum_probs=125.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHH-hhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+|.||..++..|.+.|++|++|+|+... +...+.|+....+..+++ +++|+||+|||. ..+.+++ ++
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl---~~ 127 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVL---KS 127 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHH---Hh
Confidence 68999999999999999999999999999998543 445556877777888855 469999999964 6789888 66
Q ss_pred cc-cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHh--hcccceEEEec---C-CH---HHHHHHHH
Q 022834 80 VL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQP--AETGQLVILSA---G-EK---ALYDEAIS 148 (291)
Q Consensus 80 l~-~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~g~~~~~~~---g-~~---~~~~~~~~ 148 (291)
+. +.++++++|+|+++......+.+.+.+++ +..|+ .+|++|.... ...+...++.+ + +. +..+.+.+
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~-~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 206 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE-DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLE 206 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC-CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHH
Confidence 64 56778999999998887666666665543 56677 8999988632 12232223331 2 22 34567779
Q ss_pred HHHHhccceEeeCCCChhHHHHHHHHHH
Q 022834 149 ALNVIGKKAFFLGEVGNGAKMKLVVNMI 176 (291)
Q Consensus 149 ll~~~g~~~~~~~~~~~a~~~k~~~n~~ 176 (291)
+++.+|.+++.+....+...+-.+..+.
T Consensus 207 l~~~lGa~v~~ms~eeHD~~~A~vshLp 234 (667)
T PLN02712 207 VFEREGCKMVEMSCTEHDKYAAESQFIT 234 (667)
T ss_pred HHHHcCCEEEEeCHHHHHHHHHHHHHHH
Confidence 9999999999887766666665555443
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.6e-15 Score=125.91 Aligned_cols=180 Identities=18% Similarity=0.199 Sum_probs=130.8
Q ss_pred hhHHHHHHHHhCCCcEEEEcCCcchh-------HH-----------HHHCC-------------CcccCC--HHHHHhhC
Q 022834 11 MGKAISMNLLRNGFKVTVWNRTLSKC-------DE-----------LVAHG-------------ATVGGS--PAEVIKKC 57 (291)
Q Consensus 11 mG~~la~~l~~~g~~V~~~~r~~~~~-------~~-----------l~~~g-------------~~~~~~--~~~~~~~~ 57 (291)
||..||..++.+|++|+++|++++.. +. +.+.| ++...+ ..+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 89999999999999999999998531 11 11122 233333 55778999
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHh----cCCcEEEcccCCChHhhcccceE
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS----KGGHFLEAPVSGSKQPAETGQLV 133 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~ 133 (291)
|+||.|+|.+..++..+| .++.+.+++++++. ||.++....++.+.+.. .|.+|...| ... +++
T Consensus 81 D~ViEav~E~~~~K~~~f--~~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf~~Pp-----~~~---~lv 148 (314)
T PRK08269 81 DLVFEAVPEVLDAKREAL--RWLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHWLNPA-----YLM---PLV 148 (314)
T ss_pred CEEEECCcCCHHHHHHHH--HHHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEecCCcc-----ccC---ceE
Confidence 999999999999999888 55778888888875 55555455666665532 244554444 111 222
Q ss_pred EEec---CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 022834 134 ILSA---GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI 210 (291)
Q Consensus 134 ~~~~---g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~ 210 (291)
-+++ ++++.++.+.++++.+|+.++++++.+ + +++.......++|++.++++.+++++++.+++..+.+
T Consensus 149 EVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G 220 (314)
T PRK08269 149 EVSPSDATDPAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFG 220 (314)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 3333 388999999999999999999998743 2 2344566789999999999999999999999886654
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-14 Score=118.66 Aligned_cols=252 Identities=18% Similarity=0.221 Sum_probs=160.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC-------------CcccCCHHHHHhh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~ 56 (291)
+||+|||+|-||..||..++..|++|+++|++++.+++... .| +....+.. .+++
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~ 82 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD 82 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence 58999999999999999999988999999999776554322 22 22233333 5789
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEe
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 136 (291)
||+||.+++....++.-+| .++....++++++-+.+++.|.+ ++.+.. ++.-.++....+.++.. -+++-++
T Consensus 83 ~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~it--~ia~~~-~rper~iG~HFfNP~~~---m~LVEvI 154 (307)
T COG1250 83 ADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLSIT--ELAEAL-KRPERFIGLHFFNPVPL---MPLVEVI 154 (307)
T ss_pred CCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCCHH--HHHHHh-CCchhEEEEeccCCCCc---ceeEEEe
Confidence 9999999999999988776 67778887888877655554432 344333 22223555444443332 2344455
Q ss_pred cC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCc
Q 022834 137 AG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 212 (291)
Q Consensus 137 ~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s 212 (291)
.| +++.++.+.++.+.+|+.++...+ +| ++.|-+ ....+.|+..+..+-..+++++-.+++.+.+..
T Consensus 155 ~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG------Fi~NRi---l~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~p 225 (307)
T COG1250 155 RGEKTSDETVERVVEFAKKIGKTPVVVKDVPG------FIVNRL---LAALLNEAIRLLEEGVATPEEIDAAMRQGLGLP 225 (307)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc------eehHhH---HHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCC
Confidence 55 788999999999999988766555 44 333432 457788898888887799999999888764432
Q ss_pred ccccccccccccCCCCCCcccccHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHCCCCCCcHHH
Q 022834 213 PMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGD--ENAVSMPIAAAANEAFKKARSLGLGDNDFSA 279 (291)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~--~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~ 279 (291)
+ +|. ...|+. | ++.+.+-+..+.+... ..-.+.|+++.+.+.-......|.|..||..
T Consensus 226 -m----Gpf-~l~D~~-G--lD~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 226 -M----GPF-ELADLI-G--LDVMLHIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred -c----cHH-HHHHHH-h--HHHHHHHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 1 110 001111 1 2223333333332121 1223456666666555556667778888774
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-14 Score=122.08 Aligned_cols=163 Identities=12% Similarity=0.195 Sum_probs=124.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
++|+|||. |.||..++..|.+. +++|+++|++.+ ...++.+.+++||+||+|+|- ..+.+++ +
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv-~~~~~~l---~ 69 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPI-RHTAALI---E 69 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCH-HHHHHHH---H
Confidence 58999999 99999999999964 889999998522 124667788899999999966 6678888 6
Q ss_pred ccccc---cCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCCh-HhhcccceEEEecC-CHHHHHHHHHHHHH
Q 022834 79 GVLEQ---ICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSK-QPAETGQLVILSAG-EKALYDEAISALNV 152 (291)
Q Consensus 79 ~l~~~---l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~g~~~~~~~g-~~~~~~~~~~ll~~ 152 (291)
++.+. ++++++|.|+++......+.+. ..+..|+ .+|++|.. .....+...+++.+ ..+..+.++++++.
T Consensus 70 ~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~----~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~ 145 (370)
T PRK08818 70 EYVALAGGRAAGQLWLDVTSIKQAPVAAML----ASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSA 145 (370)
T ss_pred HHhhhhcCCCCCeEEEECCCCcHHHHHHHH----hcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHH
Confidence 67654 7899999999999876655553 2345688 89999985 34446776666665 34446789999999
Q ss_pred hccceEeeCCCChhHHHHHHHHHHHHHHHH
Q 022834 153 IGKKAFFLGEVGNGAKMKLVVNMIMGCMMN 182 (291)
Q Consensus 153 ~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~ 182 (291)
+|.+++.++...+...+..++.+....++.
T Consensus 146 ~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~ 175 (370)
T PRK08818 146 LQAECVYATPEHHDRVMALVQAMVHATHLA 175 (370)
T ss_pred cCCEEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888887776544434333
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=117.36 Aligned_cols=193 Identities=18% Similarity=0.166 Sum_probs=122.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchh-HHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
++|+|||+|+||.+++.+|...|++|++++++.++. +...+.|.... +..++++++|+|++++|+.. ...++. ++
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~-~~~V~~--~~ 93 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEV-QAEVYE--EE 93 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHH-HHHHHH--HH
Confidence 489999999999999999999999999987765544 33445577655 88899999999999997654 477763 35
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChH-h----hcccceEEE-ecCC--HHHHHHHHHHH
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQ-P----AETGQLVIL-SAGE--KALYDEAISAL 150 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~----~~~g~~~~~-~~g~--~~~~~~~~~ll 150 (291)
+.+.++++++|+. +.+.+... ....+ ..++.++ .+|-..+.. . ...|-..++ +..+ .+..+.+..++
T Consensus 94 I~~~Lk~g~iL~~-a~G~~i~~--~~~~p-~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~ 169 (330)
T PRK05479 94 IEPNLKEGAALAF-AHGFNIHF--GQIVP-PADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYA 169 (330)
T ss_pred HHhcCCCCCEEEE-CCCCChhh--ceecc-CCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 7778888888754 44432221 11112 2244444 555222110 0 122323233 3443 77889999999
Q ss_pred HHhccceE-eeCC-CChhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022834 151 NVIGKKAF-FLGE-VGNGAKMKLV--VNMIMGCMMNTFSEGLVLAEKSGLDPRTL 201 (291)
Q Consensus 151 ~~~g~~~~-~~~~-~~~a~~~k~~--~n~~~~~~~~~~~E~~~~~~~~g~~~~~~ 201 (291)
+.+|.... ++.. +....-.-+. ..++......++..+.+++...|++|+..
T Consensus 170 ~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 170 KGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred HHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99997743 1111 1111100111 23344455678888888899999999743
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-15 Score=111.26 Aligned_cols=107 Identities=20% Similarity=0.315 Sum_probs=72.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEE-EcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTV-WNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~-~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+|||+|++|..|+..|.++||+|.. |+|++++.+.+... +.....+..++++++|++|++||+ ..+.++. +
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpD-daI~~va---~ 86 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPD-DAIAEVA---E 86 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-C-CHHHHHH---H
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEech-HHHHHHH---H
Confidence 6999999999999999999999999875 58988777777654 444455777888999999999988 5799999 7
Q ss_pred ccccc--cCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 79 GVLEQ--ICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 79 ~l~~~--l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
++... ..++++|+++|...+.. +.+.+.+.|..
T Consensus 87 ~La~~~~~~~g~iVvHtSGa~~~~---vL~p~~~~Ga~ 121 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTSGALGSD---VLAPARERGAI 121 (127)
T ss_dssp HHHCC--S-TT-EEEES-SS--GG---GGHHHHHTT-E
T ss_pred HHHHhccCCCCcEEEECCCCChHH---hhhhHHHCCCe
Confidence 77765 67899999999875543 22334455553
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-14 Score=114.68 Aligned_cols=151 Identities=17% Similarity=0.259 Sum_probs=100.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------C-------------CCcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------H-------------GATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~-------------g~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..+|..++.+|++|++||++++.++...+ . .+...++.+++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 7999999999999999999999999999999987654322 1 245577888877 99
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA 137 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 137 (291)
|+||.|+|....++.-+| .++.+..++++++...|++.+. .++...+.. .-.++....+.++... +++-++.
T Consensus 80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i--~~la~~~~~-p~R~ig~Hf~~P~~~~---~lVEvv~ 151 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSLSI--SELAAALSR-PERFIGMHFFNPPHLM---PLVEVVP 151 (180)
T ss_dssp SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS-H--HHHHTTSST-GGGEEEEEE-SSTTT-----EEEEEE
T ss_pred heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCCCH--HHHHhccCc-CceEEEEecccccccC---ceEEEeC
Confidence 999999999888888666 6788888888888876666543 334433321 2235544433323221 2333433
Q ss_pred C---CHHHHHHHHHHHHHhccceEeeC
Q 022834 138 G---EKALYDEAISALNVIGKKAFFLG 161 (291)
Q Consensus 138 g---~~~~~~~~~~ll~~~g~~~~~~~ 161 (291)
+ +++..+.+..+++.+|+.++.+.
T Consensus 152 ~~~T~~~~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 152 GPKTSPETVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp -TTS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 3 78899999999999999888764
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-13 Score=116.19 Aligned_cols=192 Identities=17% Similarity=0.157 Sum_probs=120.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcC-CcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR-TLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
+||+|||+|+||.+++.+|.++|++|+++++ ++++.+.+.+.|+... +..++++++|+|++++|+..+...+. ++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---~e 79 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---AE 79 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---HH
Confidence 5899999999999999999999999887654 4455666667787754 57888899999999997754666666 56
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhh------cccceEEE-ecC--CHHHHHHHHHH
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPA------ETGQLVIL-SAG--EKALYDEAISA 149 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~g~~~~~-~~g--~~~~~~~~~~l 149 (291)
+.+.++++. +|..+.+.+. ..+...++. +..++ .+|-..... . ..|-..++ +.. +.+..+.+..+
T Consensus 80 i~~~l~~g~-iVs~aaG~~i--~~~~~~~~~-~~~VvrvmPn~p~~~-vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~ 154 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFNI--HFVQIVPPK-DVDVVMVAPKGPGTL-VREEYKEGFGVPTLIAVEQDPTGEAMAIALAY 154 (314)
T ss_pred HHhhCCCCc-EEEEeCCccH--hhccccCCC-CCcEEEECCCCCcHH-HHHHhhcCCCeeEEEEecCCCCHHHHHHHHHH
Confidence 777776665 6666666442 333333433 33344 666222111 1 23332333 222 56778899999
Q ss_pred HHHhccc-------e---EeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 150 LNVIGKK-------A---FFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 150 l~~~g~~-------~---~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
++.+|.. . ..-.+ .+...+ ++..... .+..+.|+ +.+.|++++..+.++...
T Consensus 155 ~~~iG~~~~~~~~t~f~~e~~edl~~~~t~--l~Gs~pa--~v~~~~ea---lv~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 155 AKAIGGGRAGVLETTFKEETESDLFGEQAV--LCGGLTA--LIKAGFDT---LVEAGYQPELAYFETVHE 217 (314)
T ss_pred HHHcCCCccceeechhHhhhhHHhcCcchh--HHhHHHH--HHHHHHHH---HHHcCCCHHHHHHHHHHH
Confidence 9999977 2 11112 222222 2222211 12222244 478999999888776643
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=114.40 Aligned_cols=225 Identities=15% Similarity=0.198 Sum_probs=153.0
Q ss_pred CCcEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHH
Q 022834 23 GFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETS 101 (291)
Q Consensus 23 g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~ 101 (291)
.++|++++|++++++.+.+. |+....+..++++++|+||+|| +|+++++++ +++.+.+.++++||+++.+.+ .
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaV-kP~~i~~vl---~~l~~~~~~~~~ivS~~agi~--~ 82 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAV-KPQDLEEVL---SELKSEKGKDKLLISIAAGVT--L 82 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEe-CHHHHHHHH---HHHhhhccCCCEEEEecCCCC--H
Confidence 36899999999998888665 8888888889989999999999 589999999 777766667789998877754 3
Q ss_pred HHHHHHHHhcCCcEE-EcccCCChHhhcccceEE-EecC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHH
Q 022834 102 IKISRAITSKGGHFL-EAPVSGSKQPAETGQLVI-LSAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNM 175 (291)
Q Consensus 102 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~ 175 (291)
+.+.+.+... ..++ .+| +.....++.+. ++.+ +++..+.++++|+.+|..++.-.+ +.....+--+...
T Consensus 83 ~~l~~~~~~~-~~ivR~mP----n~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA 157 (245)
T TIGR00112 83 EKLSQLLGGT-RRVVRVMP----NTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPA 157 (245)
T ss_pred HHHHHHcCCC-CeEEEECC----ChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHH
Confidence 5565555422 2233 666 44444433322 3333 456678999999999977655433 5555555556677
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCc-ccccc--ccc-ccccCCCCCCcccccHHHHHHHHHHHHhhcC
Q 022834 176 IMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN-PMFKG--KGP-TMLQSNYAPAFPLKHQQKDMRLALALGDENA 251 (291)
Q Consensus 176 ~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s-~~~~~--~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g 251 (291)
+.+.++..+.++ +.+.|+++++..+++..+...+ .++.. ..+ .+.+.-.+||.+.. ..++..++.|
T Consensus 158 ~~~~~~~al~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~-------~gl~~Le~~~ 227 (245)
T TIGR00112 158 YVFLFIEALADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTI-------AGLAVLEEKG 227 (245)
T ss_pred HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHH-------HHHHHHHHCC
Confidence 766666666666 8889999999999888653222 22221 122 33444445665443 3555666788
Q ss_pred CCchHHHHHHHHHHHHH
Q 022834 252 VSMPIAAAANEAFKKAR 268 (291)
Q Consensus 252 ~~~p~~~~~~~~~~~~~ 268 (291)
+.--+.+++.+.++++.
T Consensus 228 ~~~~~~~a~~aa~~r~~ 244 (245)
T TIGR00112 228 VRGAVIEAVEAAVRRSR 244 (245)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 88888888877776653
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-12 Score=123.01 Aligned_cols=187 Identities=15% Similarity=0.125 Sum_probs=130.8
Q ss_pred eEEEEecChhhHHHHHHHH-hCCCcEEEEcCCcchhHHHH-----------HC-------------CCcccCCHHHHHhh
Q 022834 2 EVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELV-----------AH-------------GATVGGSPAEVIKK 56 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~-----------~~-------------g~~~~~~~~~~~~~ 56 (291)
||+|||+|.||..||..++ .+|++|+++|++++.++... +. .++..++. +.+++
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 384 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFKD 384 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhcc
Confidence 7999999999999999998 58999999999988655432 11 23345555 45689
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEe
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 136 (291)
||+||.|+|....++.-+| .++.+..++++++...|++.+. .++.+.+.. .-.++....+.++.. -+++-++
T Consensus 385 adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~-p~r~~g~HffnP~~~---~~lVEvv 456 (699)
T TIGR02440 385 VDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSSLPI--GQIAAAASR-PENVIGLHYFSPVEK---MPLVEVI 456 (699)
T ss_pred CCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCH--HHHHHhcCC-cccEEEEecCCcccc---CceEEEe
Confidence 9999999999988888666 6788888888888866655443 334443322 223554433332222 2334444
Q ss_pred cC---CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 137 AG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 137 ~g---~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
.+ +++.++.+..++..+|+.++.+.+ ..+ ++.|= .....+.|+..+.+ .|++++++-.++.
T Consensus 457 ~g~~T~~~~~~~~~~~~~~~gk~pv~v~d-~pG----fi~nR---l~~~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 457 PHAGTSEQTIATTVALAKKQGKTPIVVAD-KAG----FYVNR---ILAPYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEcc-ccc----hHHHH---HHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 43 788999999999999999998876 222 22232 24567889988876 6789988877764
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-12 Score=107.20 Aligned_cols=166 Identities=15% Similarity=0.214 Sum_probs=121.9
Q ss_pred HHHHHHhCC--CcEEEEcCCcchhHHHHHCCCcccC-CHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEE
Q 022834 15 ISMNLLRNG--FKVTVWNRTLSKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYI 91 (291)
Q Consensus 15 la~~l~~~g--~~V~~~~r~~~~~~~l~~~g~~~~~-~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv 91 (291)
+|+.|.++| ++|+.||++++..+...+.|+.... +..+.++++|+||+|||- ..+.+++ +++.+.++++++|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l---~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVL---EEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHH---HHHHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHH---HHhhhhcCCCcEEE
Confidence 578899998 6789999999988887777765432 225778999999999965 6688888 88889898999999
Q ss_pred EcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCC--------hHhhcccceEEEecC---CHHHHHHHHHHHHHhccceEe
Q 022834 92 DMSTVDHETSIKISRAITSKGGHFL-EAPVSGS--------KQPAETGQLVILSAG---EKALYDEAISALNVIGKKAFF 159 (291)
Q Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~g~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~ 159 (291)
|++++.....+.+.+.++ .+..|+ .+|++|+ ......|...+++.. +.+.++.+.++++.+|.+++.
T Consensus 77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~ 155 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE 155 (258)
T ss_dssp E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 999999888888887766 567888 8899998 334446777777754 457889999999999999998
Q ss_pred eCCCChhHHHHHHHHHHHHHHHHHHH
Q 022834 160 LGEVGNGAKMKLVVNMIMGCMMNTFS 185 (291)
Q Consensus 160 ~~~~~~a~~~k~~~n~~~~~~~~~~~ 185 (291)
++...+...+..++.+......++..
T Consensus 156 ~~~eeHD~~~A~vshlpH~~a~al~~ 181 (258)
T PF02153_consen 156 MDAEEHDRIMAYVSHLPHLLASALAN 181 (258)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87778888887877765554444444
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=105.98 Aligned_cols=251 Identities=17% Similarity=0.192 Sum_probs=170.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC----cEEEEcCCcchhHH-HHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDE-LVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~-l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|+||+||+|.|..++++.+.+.|. ++..+..+...... +...|+..+.+..+.++.+|++++++ ++..+++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vl- 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVL- 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHh-
Confidence 899999999999999999999884 56666664333344 66678887777788889999999999 889999999
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEecC--CHHHHHHHHHHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAG--EKALYDEAISALNV 152 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~ 152 (291)
.++...+..+++++.+-.+. +...+...+.. ...++ .+| ..|.....|..++..+. ..+..+.++++++.
T Consensus 79 --s~~~~~~~~~~iivS~aaG~--tl~~l~~~l~~-~~rviRvmp--Ntp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~ 151 (267)
T KOG3124|consen 79 --SEIKPKVSKGKIIVSVAAGK--TLSSLESKLSP-PTRVIRVMP--NTPSVVGEGASVYAIGCHATNEDLELVEELLSA 151 (267)
T ss_pred --hcCccccccceEEEEEeecc--cHHHHHHhcCC-CCceEEecC--CChhhhhcCcEEEeeCCCcchhhHHHHHHHHHh
Confidence 77877677889999665553 34455555542 12233 444 22344445544332222 45666889999999
Q ss_pred hccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCccc--ccccccccccCCC-
Q 022834 153 IGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-IANPM--FKGKGPTMLQSNY- 227 (291)
Q Consensus 153 ~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~-~~s~~--~~~~~~~~~~~~~- 227 (291)
.|+....-.+ +.....+-=....+.++++..+++. +-+.|++++..+++..++- +...| ....+|-.++.+.
T Consensus 152 vG~~~evpE~~iDavTgLsGSgPAy~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~ 228 (267)
T KOG3124|consen 152 VGLCEEVPEKCIDAVTGLSGSGPAYVFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVC 228 (267)
T ss_pred cCcceeCcHHhhhHHhhccCCcHHHHHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCC
Confidence 9976433332 3333333333455666666667666 7789999999988887652 22222 2223555555554
Q ss_pred CCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 228 APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 228 ~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
+|+.+.. +.++..++-|++.-++.++.+.-.++++-
T Consensus 229 SPgG~TI-------~glh~LE~ggfRs~linaVeaa~~r~~el 264 (267)
T KOG3124|consen 229 SPGGTTI-------YGLHALEKGGFRSGLINAVEAATKRAREL 264 (267)
T ss_pred CCCcchH-------HHHHHHHhCCchhHHHHHHHHHHHHHHHh
Confidence 6765433 45667778899999999998888887764
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-12 Score=121.40 Aligned_cols=187 Identities=15% Similarity=0.138 Sum_probs=131.8
Q ss_pred CeEEEEecChhhHHHHHHHH-hCCCcEEEEcCCcchhHHHHH-----------CC-------------CcccCCHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIK 55 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~ 55 (291)
.||+|||+|.||..||..++ .+|++|+++|++++.++...+ .| ++.+++. +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 37999999999999999999 889999999999886554211 11 3344555 4568
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEE
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVIL 135 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 135 (291)
+||+||.|+|....++.-+| .++.+..++++++...|++.+. .++.+.+.. .-.++....+.++... +++-+
T Consensus 389 ~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i--~~la~~~~~-p~r~ig~Hff~P~~~~---~lVEv 460 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSSLPI--GQIAAAAAR-PEQVIGLHYFSPVEKM---PLVEV 460 (708)
T ss_pred cCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhcCc-ccceEEEecCCccccC---ceEEE
Confidence 99999999999888888776 6788888888888876666443 334443322 2235544444333222 33444
Q ss_pred ecC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 136 SAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 136 ~~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
+.+ +++..+.+..++..+|+.++.+.+ +| ++.|= ....++.|+..+.++ |++++++-.++.
T Consensus 461 v~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nR---l~~~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 461 IPHAKTSAETIATTVALAKKQGKTPIVVRDGAG------FYVNR---ILAPYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc------HHHHH---HHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 443 788999999999999999888865 33 22232 245778899888775 788888877765
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-12 Score=121.18 Aligned_cols=187 Identities=16% Similarity=0.202 Sum_probs=130.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH-----------HCC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..||..++.+||+|+++|++++.++... +.| ++.+.+. +.+++|
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 393 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFERV 393 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCC
Confidence 799999999999999999999999999999988765421 112 3445555 446899
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA 137 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 137 (291)
|+||.|+|....++.-+| .++.+.+++++++...|++.|. .++.+.+.. .-.++....+.++... +++-++.
T Consensus 394 DlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~-p~r~~g~Hff~P~~~~---~lVEvv~ 465 (715)
T PRK11730 394 DVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTSTISI--SLLAKALKR-PENFCGMHFFNPVHRM---PLVEVIR 465 (715)
T ss_pred CEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCC-CccEEEEecCCccccc---ceEEeeC
Confidence 999999999988888776 6788888888888766665543 334443322 2235544433333222 2333444
Q ss_pred C---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022834 138 G---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 207 (291)
Q Consensus 138 g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~ 207 (291)
+ +++.++.+..++..+|+.++.+.+ +| ++.|=+ ....+.|+..+.++ |.+++++-.++..
T Consensus 466 g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG------fv~nRi---~~~~~~ea~~lv~~-Ga~~e~ID~a~~~ 529 (715)
T PRK11730 466 GEKTSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRV---LFPYFAGFSQLLRD-GADFRQIDKVMEK 529 (715)
T ss_pred CCCCCHHHHHHHHHHHHHhCCceEEecCcCc------hhHHHH---HHHHHHHHHHHHHc-CCCHHHHHHHHHh
Confidence 3 788999999999999999998876 43 333322 23456787777654 4788877776654
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-12 Score=120.92 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=133.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..||..++.+|++|+++|++++.+++..+ .| ++.+.+. +.+++|
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 393 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDNV 393 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCC
Confidence 7999999999999999999999999999999887654321 11 3344555 446899
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA 137 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 137 (291)
|+||.|+|....++.-+| .++.+..++++++...|+..+. .++...+. +.-.++....+.++.. -+++-++.
T Consensus 394 DlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~i--~~ia~~~~-~p~r~ig~Hff~P~~~---~~lvEvv~ 465 (714)
T TIGR02437 394 DIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTSTISI--SLLAKALK-RPENFCGMHFFNPVHR---MPLVEVIR 465 (714)
T ss_pred CEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHhhcC-CcccEEEEecCCCccc---CceEeecC
Confidence 999999999998888776 6788888888888866655443 33444332 2233554443332222 23344444
Q ss_pred C---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 138 G---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 138 g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
+ +++.++.+.+++..+|+.++.+.+ +| ++.|=+ ....+.|+..+.+ .|.+++++-.++..+
T Consensus 466 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~NRl---~~~~~~ea~~l~~-eG~~~~~ID~a~~~~ 530 (714)
T TIGR02437 466 GEKSSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRV---LFPYFGGFSKLLR-DGADFVRIDKVMEKQ 530 (714)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeCCccc------chHHHH---HHHHHHHHHHHHH-CCCCHHHHHHHHHhc
Confidence 4 688899999999999999998876 43 333433 3456778888865 568888888777653
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-12 Score=106.38 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=120.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-CCCcccCCHHHHH-hhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
+|||||.|.||..+|..|.++||.|...+|+. ...+++ .|....+.+.+++ +.+|+|++|| ...+++.++ ..
T Consensus 54 ~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlct-silsiekil---at 127 (480)
T KOG2380|consen 54 VIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCT-SILSIEKIL---AT 127 (480)
T ss_pred EEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEe-hhhhHHHHH---Hh
Confidence 79999999999999999999999999999964 444444 4777778888876 4699999999 778899999 55
Q ss_pred cccc-cCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccc-eEEE----ecC----CHHHHHHHHH
Q 022834 80 VLEQ-ICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQ-LVIL----SAG----EKALYDEAIS 148 (291)
Q Consensus 80 l~~~-l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~----~~g----~~~~~~~~~~ 148 (291)
..+. ++.++++++..++.....+.+.+++++ .+.++ .+|++|+.......+ ++++ -.| .++.++.+.+
T Consensus 128 ypfqrlrrgtlfvdvlSvKefek~lfekYLPk-dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fle 206 (480)
T KOG2380|consen 128 YPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK-DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLE 206 (480)
T ss_pred cCchhhccceeEeeeeecchhHHHHHHHhCcc-ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHH
Confidence 5554 778999999988877777778888876 46666 788999874544443 1222 123 3788999999
Q ss_pred HHHHhccceEeeC
Q 022834 149 ALNVIGKKAFFLG 161 (291)
Q Consensus 149 ll~~~g~~~~~~~ 161 (291)
+|.+.|.+.++++
T Consensus 207 If~cegckmVemS 219 (480)
T KOG2380|consen 207 IFACEGCKMVEMS 219 (480)
T ss_pred HHHhcCCeEEEEE
Confidence 9999998877654
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.5e-13 Score=104.29 Aligned_cols=245 Identities=16% Similarity=0.195 Sum_probs=155.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC------------------CcccCCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG------------------ATVGGSPAE 52 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g------------------~~~~~~~~~ 52 (291)
+++|||+|.||+.||..-+.+|++|+++|++.+.+.+..+ ++ ++..++..+
T Consensus 13 ~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~ 92 (298)
T KOG2304|consen 13 NVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSD 92 (298)
T ss_pred ceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHH
Confidence 5899999999999999999999999999999877654322 11 344677888
Q ss_pred HHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEE-EcccCCChHhh
Q 022834 53 VIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFL-EAPVSGSKQPA 127 (291)
Q Consensus 53 ~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~ 127 (291)
++.++|+||.++-.+..++.-+| +++....++.+++...+++ -....+...+... |.+|. ..|+..
T Consensus 93 ~v~dadliiEAivEn~diK~~lF--~~l~~~ak~~~il~tNTSS--l~lt~ia~~~~~~srf~GlHFfNPvPvMK----- 163 (298)
T KOG2304|consen 93 AVSDADLIIEAIVENLDIKRKLF--KDLDKIAKSSTILATNTSS--LSLTDIASATQRPSRFAGLHFFNPVPVMK----- 163 (298)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHH--HHHHhhcccceEEeecccc--eeHHHHHhhccChhhhceeeccCCchhHH-----
Confidence 88899999999877777777666 5666666566666543332 2233343332221 45554 223211
Q ss_pred cccceEEEec---CCHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022834 128 ETGQLVILSA---GEKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD 203 (291)
Q Consensus 128 ~~g~~~~~~~---g~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~ 203 (291)
++-++. .+++.+..+..+-+.+|+..+.+.+ +| ++.|= ..+-.+.|+.++.++-..+.+.+-.
T Consensus 164 ----LvEVir~~~TS~eTf~~l~~f~k~~gKttVackDtpG------FIVNR---lLiPyl~ea~r~yerGdAskeDIDt 230 (298)
T KOG2304|consen 164 ----LVEVIRTDDTSDETFNALVDFGKAVGKTTVACKDTPG------FIVNR---LLIPYLMEAIRMYERGDASKEDIDT 230 (298)
T ss_pred ----HhhhhcCCCCCHHHHHHHHHHHHHhCCCceeecCCCc------hhhhH---HHHHHHHHHHHHHHhcCCcHhhHHH
Confidence 111222 2688899999999999999998887 55 34342 2456788999999999999999988
Q ss_pred HHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHHH-H-HhhcCCCchHHHHHHHHHHHHHHCCCCCCcH
Q 022834 204 VLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALA-L-GDENAVSMPIAAAANEAFKKARSLGLGDNDF 277 (291)
Q Consensus 204 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~-a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~ 277 (291)
.+..++++ ||- |. ---||.. ++...--+.-..+ . ....-.|.|+++.+.+--+..+..|.|..+|
T Consensus 231 aMklGagy-PMG----Pf-EL~DyvG---LDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Y 297 (298)
T KOG2304|consen 231 AMKLGAGY-PMG----PF-ELADYVG---LDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKY 297 (298)
T ss_pred HHhccCCC-CCC----hH-HHHHHhh---HHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceec
Confidence 88887654 221 10 0011110 1100000110111 1 1233467898888777766666666665544
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.9e-12 Score=119.61 Aligned_cols=185 Identities=16% Similarity=0.140 Sum_probs=127.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------C-------------CCcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------H-------------GATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~-------------g~~~~~~~~~~~~~~ 57 (291)
+|+|||+|.||..|+..++.+|++|+++|++++.+++..+ . .++.+.+.+ .+++|
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a 415 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKNA 415 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccC
Confidence 7999999999999999999999999999999987665321 1 134455554 56899
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA 137 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 137 (291)
|+||.|+|....++.-+| .++.+.+++++++...|+..+. ..+.+.+.. .-.++....+.++.. -+++-++.
T Consensus 416 DlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~-p~r~ig~Hff~P~~~---m~LvEvv~ 487 (737)
T TIGR02441 416 DMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTSALPI--KDIAAVSSR-PEKVIGMHYFSPVDK---MQLLEIIT 487 (737)
T ss_pred CeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCC-ccceEEEeccCCccc---CceEEEeC
Confidence 999999999998888776 6788888888888765555433 334443322 223554443332222 23333444
Q ss_pred C---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022834 138 G---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVL 205 (291)
Q Consensus 138 g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~ 205 (291)
+ +++.++.+..++..+|+.++.+.+ .| ++.|=+ ....+.|+..+.+ .|++++++-.++
T Consensus 488 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------Fi~NRi---~~~~~~ea~~lv~-eGv~~~~ID~a~ 549 (737)
T TIGR02441 488 HDGTSKDTLASAVAVGLKQGKVVIVVKDGPG------FYTTRC---LGPMLAEVIRLLQ-EGVDPKKLDKLT 549 (737)
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEECCcCC------chHHHH---HHHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 3 788999999999999999998876 44 333322 2466777777754 467777766654
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-11 Score=100.20 Aligned_cols=240 Identities=15% Similarity=0.155 Sum_probs=169.1
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHHH-------------------CCCcccCCHHHHHhhCCE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI 59 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~~dv 59 (291)
+||+-||+|.+|..-..-++.+ ..+|+++|.+..+...+.. .+..+.++.+..++++|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 5899999999999988877653 2468899998887765433 234567788889999999
Q ss_pred EEEecCCHH--------------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--CCcE--EEcccC
Q 022834 60 TIGMLADPA--------------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHF--LEAPVS 121 (291)
Q Consensus 60 vii~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--~~~~--~~~~~~ 121 (291)
||+.|-+|. ..++.. .-+.......++++.-|++.....+.+...+... |+.| +..|.+
T Consensus 82 vfisvntptkt~g~gkg~aadlky~es~a---r~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpef 158 (481)
T KOG2666|consen 82 VFISVNTPTKTYGLGKGKAADLKYWESAA---RMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEF 158 (481)
T ss_pred EEEEecCCcccccCCCCcccchhHHHHHH---HHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHH
Confidence 999985443 344444 3444555577899999999888888888877533 4433 344422
Q ss_pred ---CChHhhcccceEEEecC--CHHHH---HHHHHHHHHhccce-EeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022834 122 ---GSKQPAETGQLVILSAG--EKALY---DEAISALNVIGKKA-FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE 192 (291)
Q Consensus 122 ---~~~~~~~~g~~~~~~~g--~~~~~---~~~~~ll~~~g~~~-~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~ 192 (291)
|.....-..+-.+++|| .++-+ +.+..+.+.+-.+- ++....-+++..|+..|.+.+--+..++-..++|+
T Consensus 159 laegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salce 238 (481)
T KOG2666|consen 159 LAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCE 238 (481)
T ss_pred hcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 22222112222356666 33333 44455556554332 34445789999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhcC-CCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCC
Q 022834 193 KSGLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVS 253 (291)
Q Consensus 193 ~~g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~ 253 (291)
+-|.+..++...+.... ..+.++ +-+.||...+.+||+-.++..++.+|+|
T Consensus 239 atgadv~eva~avg~d~rig~kfl----------~asvgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 239 ATGADVSEVAYAVGTDSRIGSKFL----------NASVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred hcCCCHHHHHHHhcccccccHHHh----------hcccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 99999999888877543 232222 2345888899999999999999999875
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-11 Score=94.48 Aligned_cols=191 Identities=15% Similarity=0.203 Sum_probs=137.0
Q ss_pred CeEEEEecChh--------------------hHHHHHHHHhCCCcEEEEcCCcc-----hhHHHHHCCCcccCCHHHHHh
Q 022834 1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGSPAEVIK 55 (291)
Q Consensus 1 mkI~iIG~G~m--------------------G~~la~~l~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~~~~~~ 55 (291)
|||+|+|+|+- |..||..++++||+|.+.++|.+ +.+++.+.|+.++++..++++
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~ 81 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE 81 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence 89999999986 88899999999999999987644 345566779999999999999
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHH-HHHHHHHHHhc----CCc-EEEcccCCChHhhcc
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHET-SIKISRAITSK----GGH-FLEAPVSGSKQPAET 129 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~-~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~ 129 (291)
..++.++.+|...+.-.+. +.+.++++.|.+|++++|.+|.- ...++..++.. |+. +..+.+.|.+...
T Consensus 82 ~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~-- 156 (340)
T COG4007 82 HGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHG-- 156 (340)
T ss_pred cceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCc--
Confidence 9999999999987888888 78899999999999999987753 33333333322 332 2244455555432
Q ss_pred cceEEEec--------CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHH
Q 022834 130 GQLVILSA--------GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPR 199 (291)
Q Consensus 130 g~~~~~~~--------g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~-~~g~~~~ 199 (291)
..++.+ .++++.+++.++.+..|+.++.+. ...-..+.-...++.......+.+-+.+.. -.|.+.+
T Consensus 157 --~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~p-adv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~e 232 (340)
T COG4007 157 --HYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLP-ADVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKE 232 (340)
T ss_pred --eEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecC-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 112221 167889999999999999988775 343344444455555566666666666655 2555554
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-10 Score=98.72 Aligned_cols=192 Identities=18% Similarity=0.176 Sum_probs=117.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
.+|+|||+|+||.++|.+|...|++|++|++.....+.....|..+. ++++++++||+|++++|++.+ ..++. +++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd~~t-~~V~~--~ei 92 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPDEQQ-AHVYK--AEV 92 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCChHH-HHHHH--HHH
Confidence 37999999999999999999999999999876544445555677654 899999999999999998554 67773 467
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-Eccc-CCChHhh----cccceEEEe-cC--CHHHHHHHHHHHH
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPV-SGSKQPA----ETGQLVILS-AG--EKALYDEAISALN 151 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~----~~g~~~~~~-~g--~~~~~~~~~~ll~ 151 (291)
.+.++++++++ .|-+.......+ .+..++.++ -+|- .|+.... ..|-..++. -. +..+.+.......
T Consensus 93 l~~MK~GaiL~-f~hgfni~~~~i---~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~ 168 (335)
T PRK13403 93 EENLREGQMLL-FSHGFNIHFGQI---NPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAK 168 (335)
T ss_pred HhcCCCCCEEE-ECCCcceecCce---eCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHH
Confidence 88888887655 455533322222 223345444 5553 2322221 112222221 11 3345667777778
Q ss_pred Hhccce--EeeCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022834 152 VIGKKA--FFLGEVGNGAKMKLV--VNMIMGCMMNTFSEGLVLAEKSGLDPRT 200 (291)
Q Consensus 152 ~~g~~~--~~~~~~~~a~~~k~~--~n~~~~~~~~~~~E~~~~~~~~g~~~~~ 200 (291)
.+|..- ++-.......-..++ +..+..+...++.-+.+.+.+.|.+|+.
T Consensus 169 ~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~ 221 (335)
T PRK13403 169 GVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEI 221 (335)
T ss_pred HcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 887552 111112222222222 1123334456666667778889998874
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-11 Score=99.58 Aligned_cols=272 Identities=14% Similarity=0.089 Sum_probs=156.5
Q ss_pred eEEEEecChhhHHHHHHHHhC--CC-----cEEEEcCCcch---hHHHHH------------------CCCcccCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN--GF-----KVTVWNRTLSK---CDELVA------------------HGATVGGSPAEV 53 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~--g~-----~V~~~~r~~~~---~~~l~~------------------~g~~~~~~~~~~ 53 (291)
||+|||.|+||+++++.+.++ ++ +|..|-+..+. .+.+.+ .++...+|+.++
T Consensus 23 kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ea 102 (372)
T KOG2711|consen 23 KVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVEA 102 (372)
T ss_pred EEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHHH
Confidence 799999999999999999873 22 47777543221 122322 124457789999
Q ss_pred HhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHH-----HHHHHHHHHHhc---CCcEEEcccCCChH
Q 022834 54 IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHE-----TSIKISRAITSK---GGHFLEAPVSGSKQ 125 (291)
Q Consensus 54 ~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~ 125 (291)
++++|+++..+|. +.+.+++ +++...++++...|+++.+... ...-+.+.+.+. .+.++..|-+....
T Consensus 103 ~~dADilvf~vPh-Qf~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~EV 178 (372)
T KOG2711|consen 103 AKDADILVFVVPH-QFIPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIASEV 178 (372)
T ss_pred hccCCEEEEeCCh-hhHHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHHHH
Confidence 9999999999977 6789999 8999999999998988876321 133344444433 23344444222222
Q ss_pred hhcccceEEEecC-CHHHHHHHHHHHHHhccceEeeCCC-Ch--hHHHH--------------HHHHHHHHHHHHHHHHH
Q 022834 126 PAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEV-GN--GAKMK--------------LVVNMIMGCMMNTFSEG 187 (291)
Q Consensus 126 ~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~~~~~~~~~-~~--a~~~k--------------~~~n~~~~~~~~~~~E~ 187 (291)
....-.-+.+... ..+.-..+..+|+.-.+.++...+. +. ..++| +..|.-.+.+...+.|.
T Consensus 179 a~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~Em 258 (372)
T KOG2711|consen 179 ANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLEM 258 (372)
T ss_pred HhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHHHH
Confidence 2222222223333 2333335888888888877776662 21 12222 23445555566677777
Q ss_pred HHHHHH-cCC-CHHHHHHHHhhc-------CCCcccccccccccccCC---------CCCCcccccHHHHHHHHHHHHhh
Q 022834 188 LVLAEK-SGL-DPRTLLDVLDLG-------GIANPMFKGKGPTMLQSN---------YAPAFPLKHQQKDMRLALALGDE 249 (291)
Q Consensus 188 ~~~~~~-~g~-~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~---------~~~~~~~~~~~~d~~~~~~~a~~ 249 (291)
+.++.. ..- .++++++....+ .+.+.. ..+.+.++. ...|. .-....-.+.+.++.++
T Consensus 259 ~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~---~aeafaktgk~~~~~E~ell~Gq-~~QG~~Ta~~Vy~~L~~ 334 (372)
T KOG2711|consen 259 IKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRK---VAEAFAKTGKSLEELEKELLNGQ-KLQGPATAKEVYELLQK 334 (372)
T ss_pred HHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHH---HHHHHHHcCCCHHHHHHHhhCCC-cccCcHHHHHHHHHHHH
Confidence 777665 122 333333322111 111111 111111110 01111 11123335677888888
Q ss_pred cCC--CchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhh
Q 022834 250 NAV--SMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 288 (291)
Q Consensus 250 ~g~--~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 288 (291)
.+. ..|++.++++... ++....++++.++++.
T Consensus 335 ~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~~~ 368 (372)
T KOG2711|consen 335 KGLVEKFPLFTAVYKICY-------ERLPPQALLECLRNHP 368 (372)
T ss_pred cChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhccc
Confidence 888 7999999887764 4457788888887654
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.2e-11 Score=105.45 Aligned_cols=111 Identities=18% Similarity=0.124 Sum_probs=93.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|||||+|+||..+++.|..-|.+|.+|||+....+...+.|+....++++++++||+|++++|...+++.++- ++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~ 270 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD--ADV 270 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhC--HHH
Confidence 589999999999999999999999999999986444434445666667899999999999999998888888872 356
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++.+.....+.+.+.+....+
T Consensus 271 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i 303 (385)
T PRK07574 271 LSRMKRGSYLVNTARGKIVDRDAVVRALESGHL 303 (385)
T ss_pred HhcCCCCcEEEECCCCchhhHHHHHHHHHhCCc
Confidence 677889999999999998888888888876533
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.7e-11 Score=104.57 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=93.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|+||..+++.|..-|.+|.+||++....+...+.|+....+.++++++||+|++++|...+.+.++- ++.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~--~~~ 277 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFN--KER 277 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhC--HHH
Confidence 489999999999999999999999999999986544444455777677999999999999999999888888872 356
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++-+.....+.+.+.+....+
T Consensus 278 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l 310 (386)
T PLN03139 278 IAKMKKGVLIVNNARGAIMDTQAVADACSSGHI 310 (386)
T ss_pred HhhCCCCeEEEECCCCchhhHHHHHHHHHcCCc
Confidence 777889999999999998888888888876533
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-10 Score=88.58 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=93.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||. |.||..++..|.++||.|+ +.+||+||+|+|- ..+.+++ ++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv-~~~~~~i---~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPI-DAALNYI---ES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCH-HHHHHHH---HH
Confidence 89999988 9999999999999999986 2589999999966 5567777 44
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhccc--ceEEEec--CCHHHHHHHHHHHHHhc
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETG--QLVILSA--GEKALYDEAISALNVIG 154 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g--~~~~~~~--g~~~~~~~~~~ll~~~g 154 (291)
+. .+++|.++......+ ....|+ .+|++|... ...+ ...+++. .+++..+.++++++ |
T Consensus 51 ~~------~~v~Dv~SvK~~i~~--------~~~~~vg~HPMfGp~~-a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G 113 (197)
T PRK06444 51 YD------NNFVEISSVKWPFKK--------YSGKIVSIHPLFGPMS-YNDGVHRTVIFINDISRDNYLNEINEMFR--G 113 (197)
T ss_pred hC------CeEEeccccCHHHHH--------hcCCEEecCCCCCCCc-CcccccceEEEECCCCCHHHHHHHHHHHc--C
Confidence 33 378999988764221 134688 889998443 2221 2333332 24566778899988 7
Q ss_pred cceEeeCCCChhHHHHHHHHHH
Q 022834 155 KKAFFLGEVGNGAKMKLVVNMI 176 (291)
Q Consensus 155 ~~~~~~~~~~~a~~~k~~~n~~ 176 (291)
.+++.+....+...+-.++.+.
T Consensus 114 ~~~~~~t~eeHD~~~A~ishLp 135 (197)
T PRK06444 114 YHFVEMTADEHDLLMSEIMVKP 135 (197)
T ss_pred CEEEEeCHHHHHHHHHHHHHHH
Confidence 7888887777777777776654
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=103.99 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=86.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|||||+|.||..+|..|...|++|++||++++.... ......+.++++++||+|++++|...+...++. +++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~~ 220 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FLTYKDSVKEAIKDADIISLHVPANKESYHLFD--KAM 220 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HHH
Confidence 68999999999999999999999999999998764332 223456889999999999999998877776663 466
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
.+.++++.++|+++-+.......+.+.+.+.
T Consensus 221 l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g 251 (330)
T PRK12480 221 FDHVKKGAILVNAARGAVINTPDLIAAVNDG 251 (330)
T ss_pred HhcCCCCcEEEEcCCccccCHHHHHHHHHcC
Confidence 6778899999999998777777787777654
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-11 Score=95.46 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=84.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC-CC----cccCCHHHHHhhCCEEEEecCCHHH-HHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GA----TVGGSPAEVIKKCTITIGMLADPAA-ALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g~----~~~~~~~~~~~~~dvvii~vp~~~~-~~~v 73 (291)
++|+|+|+|.||..++..|.+.| ++|++++|++++.+.+.+. +. ....+..+.++++|+||.|+|.+.+ .+.+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~ 99 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDEL 99 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCC
Confidence 47999999999999999999986 7899999999888776654 32 2345666777899999999988654 3333
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
.+. ...++++++++|+++..+.+ .+.+.+.+.|..+++.
T Consensus 100 ~~~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~g 138 (155)
T cd01065 100 PLP----PSLLKPGGVVYDVVYNPLET--PLLKEARALGAKTIDG 138 (155)
T ss_pred CCC----HHHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeCC
Confidence 321 12356899999998885543 6767777778877744
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-11 Score=102.47 Aligned_cols=107 Identities=13% Similarity=0.199 Sum_probs=88.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+|+.|...|.+|.+|||++... .....+... .+.++++++||+|++++|...+.+.++. ++.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~--~~~ 226 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETYHMIN--EER 226 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccC--HHH
Confidence 489999999999999999999999999999986543 223335443 4789999999999999998888887773 356
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++.+.....+.+.+.+.+.
T Consensus 227 ~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 227 LKLMKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred HhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 6778899999999999888888888877654
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-11 Score=92.67 Aligned_cols=102 Identities=14% Similarity=0.238 Sum_probs=79.6
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC--------------CHHHHHhhCCEEEEecCCHH
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------------SPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--------------~~~~~~~~~dvvii~vp~~~ 68 (291)
|+|+|+|.||..+|..|+++|++|+++.|++ +.+.+.+.|..+.. +..+..+.+|+||+|| |..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v-Ka~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV-KAY 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S-SGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe-ccc
Confidence 7899999999999999999999999999988 88888876644321 1223456899999999 778
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHh
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS 110 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~ 110 (291)
++++++ +.+.+.+.+++.|+.+.|+-.. .+.+.+.+..
T Consensus 79 ~~~~~l---~~l~~~~~~~t~iv~~qNG~g~-~~~l~~~~~~ 116 (151)
T PF02558_consen 79 QLEQAL---QSLKPYLDPNTTIVSLQNGMGN-EEVLAEYFPR 116 (151)
T ss_dssp GHHHHH---HHHCTGEETTEEEEEESSSSSH-HHHHHCHSTG
T ss_pred chHHHH---HHHhhccCCCcEEEEEeCCCCc-HHHHHHHcCC
Confidence 899999 7888998888888888887442 3555555533
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=101.06 Aligned_cols=107 Identities=11% Similarity=0.144 Sum_probs=84.1
Q ss_pred CeEEEEecChhhHHHHHHHH-hCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+|||||+|.||..++..|+ ..|.+|+.||+++.... ..++....+++++++++|+|++++|.....+.++ + .+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li-~-~~ 221 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLF-N-AD 221 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhc-C-HH
Confidence 68999999999999999994 45789999998765421 2234555689999999999999999876665544 2 24
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
..+.++++.++|++|.+.......+.+.+....
T Consensus 222 ~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~ 254 (332)
T PRK08605 222 LFKHFKKGAVFVNCARGSLVDTKALLDALDNGL 254 (332)
T ss_pred HHhcCCCCcEEEECCCCcccCHHHHHHHHHhCC
Confidence 556778999999999998888888888776543
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-10 Score=95.08 Aligned_cols=109 Identities=19% Similarity=0.262 Sum_probs=82.8
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEE-EEcCCcchhHHHHHC-C-CcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-G-ATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~-~~~r~~~~~~~l~~~-g-~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||||||+|.||..++..|.+. ++++. +|+|++++.+.+.+. | ....++.++++.++|+|++|+|...+ .++.
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e~~- 84 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RAIV- 84 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HHHH-
Confidence 5899999999999999999863 67766 789999888877654 5 35677899999999999999988665 4444
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
.. .+..|+.++..+.+.....+++.+...+.+..+.
T Consensus 85 --~~---aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~ 120 (271)
T PRK13302 85 --EP---VLAAGKKAIVLSVGALLRNEDLIDLARQNGGQII 120 (271)
T ss_pred --HH---HHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEE
Confidence 22 3456666666666655566778777777787664
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-10 Score=92.40 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=83.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|++|..+++.+..-|.+|++|||+..........+.. ..+.+++++.||+|++++|...+...++- ++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~-~~~l~ell~~aDiv~~~~plt~~T~~li~--~~~ 113 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVE-YVSLDELLAQADIVSLHLPLTPETRGLIN--AEF 113 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEE-ESSHHHHHHH-SEEEE-SSSSTTTTTSBS--HHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccce-eeehhhhcchhhhhhhhhccccccceeee--eee
Confidence 479999999999999999999999999999988765545555663 45999999999999999997665555551 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++-+....-+.+.+.+.+.
T Consensus 114 l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 114 LAKMKPGAVLVNVARGELVDEDALLDALESG 144 (178)
T ss_dssp HHTSTTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred eeccccceEEEeccchhhhhhhHHHHHHhhc
Confidence 5678899999999988777777787777654
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-10 Score=96.79 Aligned_cols=103 Identities=16% Similarity=0.293 Sum_probs=85.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc-ccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.+|||||+|+||..+++.+..-|++|.+|+|+... .+.. ...++++++++||+|++++|...+.+.++- .+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~--~~ 194 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMIN--SK 194 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcC--HH
Confidence 37999999999999999888889999999997432 2332 246899999999999999998888887772 35
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
....++++.++|++|.+.....+.+.+.+.+.
T Consensus 195 ~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 195 MLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 56678899999999999988888888887765
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-10 Score=87.31 Aligned_cols=92 Identities=26% Similarity=0.290 Sum_probs=68.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc-hhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.+|+|||+|+.|.+.+.+|.++|.+|++..|... ..++..+.|..+. +..|+++.+|+|++.+|+ ....+++. ++
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD-~~q~~vy~--~~ 80 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPD-EVQPEVYE--EE 80 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-H-HHHHHHHH--HH
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCCh-HHHHHHHH--HH
Confidence 3799999999999999999999999999988766 6677778898775 888999999999999977 55566763 57
Q ss_pred cccccCCCcEEEEcCCCC
Q 022834 80 VLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~ 97 (291)
+.+.+++++.++. +.+.
T Consensus 81 I~p~l~~G~~L~f-ahGf 97 (165)
T PF07991_consen 81 IAPNLKPGATLVF-AHGF 97 (165)
T ss_dssp HHHHS-TT-EEEE-SSSH
T ss_pred HHhhCCCCCEEEe-CCcc
Confidence 8899989887664 4453
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=87.01 Aligned_cols=191 Identities=17% Similarity=0.210 Sum_probs=128.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC--------------CcccCCHHHHHhh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG--------------ATVGGSPAEVIKK 56 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g--------------~~~~~~~~~~~~~ 56 (291)
||+|+|.|.+|+.+|..|++.||+|.+||..++++....+ .| +..++++.|++++
T Consensus 5 ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~ 84 (313)
T KOG2305|consen 5 KIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKG 84 (313)
T ss_pred ceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhh
Confidence 8999999999999999999999999999999887654321 22 3457789999999
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCC--CHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEE
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV--DHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVI 134 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 134 (291)
+=.|-.|+|..-+++.-++ +++...+.+ +.|+..|++ -|+ .+..-+..+.-.++.+|+--+ -.. +++-
T Consensus 85 Ai~iQEcvpE~L~lkk~ly--~qlD~i~d~-~tIlaSSTSt~mpS---~~s~gL~~k~q~lvaHPvNPP-yfi---PLvE 154 (313)
T KOG2305|consen 85 AIHIQECVPEDLNLKKQLY--KQLDEIADP-TTILASSTSTFMPS---KFSAGLINKEQCLVAHPVNPP-YFI---PLVE 154 (313)
T ss_pred hhhHHhhchHhhHHHHHHH--HHHHHhcCC-ceEEeccccccChH---HHhhhhhhhhheeEecCCCCC-ccc---chhe
Confidence 8889999999888877654 566666644 444544443 232 233323333233556664221 111 1222
Q ss_pred Eec---CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022834 135 LSA---GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG 209 (291)
Q Consensus 135 ~~~---g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~ 209 (291)
++. .+++..++.+.+...+|.+++.....-.+..+..+ -.+.++|..++.+.-+++..++-.+++.+-
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnri-------q~Ailne~wrLvasGil~v~dvD~VmS~GL 225 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRI-------QYAILNETWRLVASGILNVNDVDAVMSAGL 225 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCCCCcccccccccceeccc-------cHHHHHHHHHHHHccCcchhhHHHHHhcCC
Confidence 332 37888999999999999888776653334443332 247788888888887777777766666653
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-10 Score=95.59 Aligned_cols=108 Identities=18% Similarity=0.353 Sum_probs=85.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+++.|...|++|.+|+++++....+.. .....++++++++||+|++++|...+.+.++. ++.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~--~~~ 212 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIIN--QQL 212 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhH--HHH
Confidence 47999999999999999999999999999987654321111 11234788999999999999998888888873 356
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
...++++.++|+++-+....-+.+.+.+.+..
T Consensus 213 l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~ 244 (312)
T PRK15469 213 LEQLPDGAYLLNLARGVHVVEDDLLAALDSGK 244 (312)
T ss_pred HhcCCCCcEEEECCCccccCHHHHHHHHhcCC
Confidence 67788999999999987777777877776653
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=90.34 Aligned_cols=109 Identities=22% Similarity=0.334 Sum_probs=80.1
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCc-EEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||..++..|.+. +++ +.++|+++++.+.+.+. +...+.+.++++.++|+|++|+|. ....+..
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~-~~~~~~~-- 78 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV-NAVEEVV-- 78 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh-HHHHHHH--
Confidence 7999999999999999999875 355 55789999888877654 667778899988899999999965 4455555
Q ss_pred cCccccccCCCcEEEEcCCC---CHHHHHHHHHHHHhcCCcEE
Q 022834 77 KGGVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+ +..|+.++..|.+ .+...+++.+...+.+..+.
T Consensus 79 -~~a---l~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~ 117 (265)
T PRK13304 79 -PKS---LENGKDVIIMSVGALADKELFLKLYKLAKENNCKIY 117 (265)
T ss_pred -HHH---HHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEE
Confidence 333 3345555555553 45566777777777776543
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=98.94 Aligned_cols=110 Identities=13% Similarity=0.148 Sum_probs=89.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|+||..+|+.|..-|.+|.+||+... .+...+.|....+++++++++||+|++++|...+.+.++- ++.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~ 215 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYIS-PERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIG--AEE 215 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcC--HHH
Confidence 3799999999999999999999999999998532 2333445766667899999999999999998877777762 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++.+.......+.+.+....+
T Consensus 216 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 248 (525)
T TIGR01327 216 LAKMKKGVIIVNCARGGIIDEAALYEALEEGHV 248 (525)
T ss_pred HhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCe
Confidence 567889999999999988888888887776543
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-09 Score=99.63 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=88.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|+||..+++.|...|++|.+||++.. .+...+.|.... +.++++++||+|++++|...+.+.++- .+.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~--~~~ 216 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYIS-PERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIG--AEE 216 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcC--HHH
Confidence 4799999999999999999999999999998643 233344566665 899999999999999999888887772 256
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++.+.....+.+.+.+.+.
T Consensus 217 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 247 (526)
T PRK13581 217 LAKMKPGVRIINCARGGIIDEAALAEALKSG 247 (526)
T ss_pred HhcCCCCeEEEECCCCceeCHHHHHHHHhcC
Confidence 6778899999999999888888888877664
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.7e-09 Score=88.58 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=79.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc--CCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
+++|+|+|.||..++..|...|.+|++++|++++.+.+.+.|.... .+..+.++++|+||.++|.....++
T Consensus 153 ~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~------- 225 (287)
T TIGR02853 153 NVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTAD------- 225 (287)
T ss_pred EEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHH-------
Confidence 7999999999999999999999999999999888777766665433 2456778899999999976422122
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
..+.++++.+++|+++....+- + +...+.|.+.+-+|
T Consensus 226 ~l~~~k~~aliIDlas~Pg~td--f-~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 226 VLSKLPKHAVIIDLASKPGGTD--F-EYAKKRGIKALLAP 262 (287)
T ss_pred HHhcCCCCeEEEEeCcCCCCCC--H-HHHHHCCCEEEEeC
Confidence 2344567899999988643321 1 34456677666544
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.5e-09 Score=91.52 Aligned_cols=108 Identities=17% Similarity=0.108 Sum_probs=83.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHH------------HHCCCcccCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL------------VAHGATVGGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l------------~~~g~~~~~~~~~~~~~~dvvii~vp~~~ 68 (291)
++|||||+|.||..+++.|..-|.+|++|+|+....... ..... ...+.++++++||+|++++|...
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~ 238 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTK 238 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCCh
Confidence 479999999999999999999999999999974321111 01112 34588999999999999999877
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
....++- ++....++++.++|+++-+....-+.+.+.+...
T Consensus 239 ~T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g 279 (347)
T PLN02928 239 ETAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279 (347)
T ss_pred HhhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 7777662 3556678899999999988777777777777654
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-08 Score=74.02 Aligned_cols=108 Identities=20% Similarity=0.282 Sum_probs=81.2
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEE-EEcCCcchhHHHHH-CCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVA-HGATVGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+|.+|......+.+. ++++. ++|+++++.+.+.+ .|...++|.+++++ +.|+|++|+|...+.+-+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 6999999999999999998876 45554 78999999888754 48889999999987 6899999999987766555
Q ss_pred hccCccccccCCCc-EEEEc-CCCCHHHHHHHHHHHHhcCCcE
Q 022834 75 FDKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 75 ~~~~~l~~~l~~~~-~vv~~-s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
. .+..|. ++++- -.......+++.+...+.+..+
T Consensus 81 ---~----~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 81 ---K----ALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp ---H----HHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred ---H----HHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 2 223444 44441 1336777888888777776654
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.7e-09 Score=90.12 Aligned_cols=108 Identities=20% Similarity=0.225 Sum_probs=86.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++||||+|++|+.++..+..-|.+|.+||+...+. .....+.....++++++++||+|.+.+|.....+.++- .+.
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~--~~~ 219 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLIN--AEE 219 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccC--HHH
Confidence 479999999999999999999999999999943322 22233566678999999999999999998887777772 244
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++-+.....+.+.+.+.+.
T Consensus 220 ~a~MK~gailIN~aRG~vVde~aL~~AL~~G 250 (324)
T COG0111 220 LAKMKPGAILINAARGGVVDEDALLAALDSG 250 (324)
T ss_pred HhhCCCCeEEEECCCcceecHHHHHHHHHcC
Confidence 5567799999999999877777787777654
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-09 Score=92.19 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=77.9
Q ss_pred eEEEEecChhhHHHHHHHHh--CCCcEEEEcCCcchhHHHHHC----C--CcccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
+|+|||+|.||..++..+.. ...+|++|+|++++.+.+.+. | +....+.+++++++|+|+.|+|.+ +.+
T Consensus 127 ~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~pv 203 (314)
T PRK06141 127 RLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---EPL 203 (314)
T ss_pred eEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---CCE
Confidence 79999999999999986654 347899999999999887764 4 455678888999999999888654 344
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
+ . ...+++++ +|++....+...+++...+.+++..|+|.
T Consensus 204 l---~--~~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 204 V---R--GEWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred e---c--HHHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 4 1 13566777 45555555555566665555555556653
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.7e-09 Score=91.51 Aligned_cols=104 Identities=19% Similarity=0.221 Sum_probs=80.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHH----HHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA----AALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~----~~~~v~~~ 76 (291)
++|||||+|+||..+++.+..-|.+|.+||+..... .+.....++++++++||+|++++|... ....++ +
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li-~ 190 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLL-D 190 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccC-C
Confidence 479999999999999999999999999999854321 122234589999999999999998643 233333 2
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
++....++++.++|+++.+.....+.+.+.+...
T Consensus 191 -~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g 224 (381)
T PRK00257 191 -EAFLASLRPGAWLINASRGAVVDNQALREALLSG 224 (381)
T ss_pred -HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 2455668899999999999888888888777654
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=82.37 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=76.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcccCCHHHHH-hhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|+|+|+|+|+||..+++.|.+.|++|+++|+++++.+.+.+. +....++ +++. .+||+++-|.....-.++.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~---- 103 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTI---- 103 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHH----
Confidence 589999999999999999999999999999999888887765 6655544 4444 47999997753322222222
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
+.+ +.++|+.-.++.... .+..+.+.++|+.|++
T Consensus 104 ---~~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 104 ---PQL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAP 137 (200)
T ss_pred ---HHc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeC
Confidence 233 356888777763322 4566678888988873
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=87.37 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=86.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++||||+|++|.++|+.+..-|.+|..|+|++. -+.-.+.+.+..+ .+++++++|+|.+.+|-..+...++- .+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin--~~~ 222 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLIN--AEE 222 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcC--HHH
Confidence 4899999999999999999966778999999865 3333333456555 99999999999999998888777773 255
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++-+.....+.+.+.+.+.
T Consensus 223 l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 223 LAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 6678899999999999887878888777665
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=86.76 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=62.7
Q ss_pred CeEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.+|+|||.| .||..|+..|.++|++|++|++.. .++.+.+++||+||+|++++..++..+
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~~~v~~~~----- 220 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRPRLIDADW----- 220 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCChhcccHhh-----
Confidence 379999996 999999999999999999998753 278888999999999999987665544
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
+++|++|||++..
T Consensus 221 ----ik~GaiVIDvgin 233 (301)
T PRK14194 221 ----LKPGAVVIDVGIN 233 (301)
T ss_pred ----ccCCcEEEEeccc
Confidence 6789999999865
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.7e-08 Score=84.26 Aligned_cols=107 Identities=10% Similarity=0.096 Sum_probs=83.8
Q ss_pred CeEEEEecChhhHHHHHHHH-hCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
+++||||+|++|..+++.+. .-|.+|..|++.... +.....+... .+.++++++||+|++++|...+.+.++- .+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~--~~ 221 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFG--AE 221 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccC--HH
Confidence 47999999999999999997 667789999986422 2222335544 4899999999999999998887777762 24
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
....++++.++|+++-+....-+.+.+.+.+.
T Consensus 222 ~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 253 (323)
T PRK15409 222 QFAKMKSSAIFINAGRGPVVDENALIAALQKG 253 (323)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 56678899999999998877778888777654
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-08 Score=90.00 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=86.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++||||+|++|..+|+.+..-|.+|..||+++... ..+.....++++++++||+|.+++|...+...++- ++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~--~~~ 225 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIG--AEE 225 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccC--HHH
Confidence 379999999999999999999999999999864321 12344456899999999999999998777777662 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++-+.....+.+.+.+.+..+
T Consensus 226 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 258 (409)
T PRK11790 226 LALMKPGAILINASRGTVVDIDALADALKSGHL 258 (409)
T ss_pred HhcCCCCeEEEECCCCcccCHHHHHHHHHcCCc
Confidence 667889999999999988888888887766533
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=66.76 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=75.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHH
Q 022834 164 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA 243 (291)
Q Consensus 164 ~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 243 (291)
..|+..|++.|.+.++.+++++|...+|++.|+|..++.+.+......++ ... .+.+|+...+..||...+
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~-------~~~--~pg~g~GG~ClpkD~~~L 72 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGP-------HYL--RPGPGFGGSCLPKDPYAL 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTS-------SS---S-SSS--SSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccccc-------ccC--CCCCCCCCcchhhhHHHH
Confidence 46899999999999999999999999999999999999999987643321 111 123456778899999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHH
Q 022834 244 LALGDENAVSMPIAAAANEAFK 265 (291)
Q Consensus 244 ~~~a~~~g~~~p~~~~~~~~~~ 265 (291)
...+++.|.+.++++++.+...
T Consensus 73 ~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 73 IYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhcC
Confidence 9999999999999988877654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.6e-08 Score=76.10 Aligned_cols=103 Identities=24% Similarity=0.346 Sum_probs=74.7
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCc-EEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|+|+|||||.+|..+...+... .++ +.+|||+.+++..+.+. +.+..++++|.+.+.|+++.|- .++++++..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaA-S~~Av~e~~-- 77 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAA-SPEAVREYV-- 77 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeC-CHHHHHHHh--
Confidence 7999999999999999988753 354 77899999999877654 5555688999989999999999 667787776
Q ss_pred cCccccccCCCcEEEEcCCC---CHHHHHHHHHHHHh
Q 022834 77 KGGVLEQICPGKGYIDMSTV---DHETSIKISRAITS 110 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~~ 110 (291)
.++ |+.|.-++.+|.+ .+...+++.+....
T Consensus 78 -~~~---L~~g~d~iV~SVGALad~~l~erl~~lak~ 110 (255)
T COG1712 78 -PKI---LKAGIDVIVMSVGALADEGLRERLRELAKC 110 (255)
T ss_pred -HHH---HhcCCCEEEEechhccChHHHHHHHHHHhc
Confidence 333 3444434444544 35555555544433
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-08 Score=87.46 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=78.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHH----HHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA----ALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~----~~~v~~~ 76 (291)
++|||||+|+||+.+++.|..-|.+|.+||+..... ... ....++++++++||+|++++|-... ...++ +
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li-~ 190 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLA-D 190 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCccccccccc-C
Confidence 479999999999999999999999999999743211 111 1245899999999999999985332 33333 1
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
++....+++++++|+++-+....-+.+.+.+.+.
T Consensus 191 -~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 191 -EKLIRSLKPGAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred -HHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence 2445667899999999999877777787777654
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.4e-08 Score=84.65 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=83.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++||||+|++|..+|+.+..-|.+|..|||..... ..+.. ..+.++++++||+|++++|...+...++- ++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~--~~~ 218 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIA--YKE 218 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccC--HHH
Confidence 479999999999999999988888999999864321 12333 34899999999999999998777766662 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++-+.....+.+.+.+.+..+
T Consensus 219 ~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i 251 (311)
T PRK08410 219 LKLLKDGAILINVGRGGIVNEKDLAKALDEKDI 251 (311)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 567889999999999887777888887765433
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.8e-08 Score=83.94 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=87.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHCC---Cc-------ccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHG---AT-------VGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g---~~-------~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||.|||+|.+|+..+..|+++| ++|++.||+.+++.++.+.. ++ -.+...+++++.|+||.|.|....
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 68999999999999999999998 89999999999999887652 21 123455778889999999977554
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGS 123 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 123 (291)
. .++ + ..++.+..++|+|...+.. .++.+.+.+.|+..+ ++.+.-+
T Consensus 82 ~-~i~---k---a~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPG 128 (389)
T COG1748 82 L-TIL---K---ACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPG 128 (389)
T ss_pred H-HHH---H---HHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcc
Confidence 3 444 2 2345778899998887765 777777777777665 5544333
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.6e-08 Score=82.29 Aligned_cols=107 Identities=22% Similarity=0.220 Sum_probs=77.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc--CCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
.|++|||+|.+|..++..|...|.+|++++|++++.+.....|.... .+..+.++++|+||.|+|...-.++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~------ 226 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKE------ 226 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHH------
Confidence 47999999999999999999999999999999888777766676543 2556777899999999976432222
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
....++++.+|+|++.....+- + +...+.|+..+.
T Consensus 227 -~l~~~~~g~vIIDla~~pggtd--~-~~a~~~Gv~~~~ 261 (296)
T PRK08306 227 -VLSKMPPEALIIDLASKPGGTD--F-EYAEKRGIKALL 261 (296)
T ss_pred -HHHcCCCCcEEEEEccCCCCcC--e-eehhhCCeEEEE
Confidence 3344668899999887643321 1 233445655553
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-07 Score=80.88 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=81.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+|||||+|++|..+++.+..-|.+|..|++.... .... ..+.++++++||+|++++|-..+.+.++- ++..
T Consensus 150 tvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~--~~~~ 220 (317)
T PRK06487 150 TLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEHTRHLIG--AREL 220 (317)
T ss_pred EEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChHHhcCcC--HHHH
Confidence 7999999999999999999889999999986321 1112 24789999999999999998777777662 2556
Q ss_pred cccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 82 EQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
..++++.++|+++-+.....+.+.+.+.+.
T Consensus 221 ~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 250 (317)
T PRK06487 221 ALMKPGALLINTARGGLVDEQALADALRSG 250 (317)
T ss_pred hcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 678899999999988777777787777654
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=81.56 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=87.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+|+|+|+|++|..++++|..-|..+..+.|++...+...+.+.. ..+.++.+.++|+|++|.|...++..++. +++.
T Consensus 164 ~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liN--k~~~ 240 (336)
T KOG0069|consen 164 TVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLIN--KKFI 240 (336)
T ss_pred EEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhh--HHHH
Confidence 79999999999999999999884455667877766666665655 45888999999999999999888888874 3677
Q ss_pred cccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 82 EQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
..++++.++|+++-+....-+.+.+.+.+.
T Consensus 241 ~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 241 EKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 788899999999988877777777766553
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.5e-08 Score=81.43 Aligned_cols=72 Identities=24% Similarity=0.344 Sum_probs=61.1
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEc-CCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWN-RTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
.+|+||| .|.||..|+..|.++|++|++|+ |++ +++++++++|+||+|++++..++..+
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~---- 219 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW---- 219 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe----
Confidence 3799999 99999999999999999999995 653 46788899999999999977555443
Q ss_pred ccccccCCCcEEEEcCCC
Q 022834 79 GVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~ 96 (291)
+++|++|||++..
T Consensus 220 -----lk~GavVIDvGin 232 (296)
T PRK14188 220 -----IKPGATVIDVGIN 232 (296)
T ss_pred -----ecCCCEEEEcCCc
Confidence 6789999998765
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=82.25 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=81.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++||||+|.+|..+++.+..-|.+|..|++.... .. .. ...+.++++++||+|++++|-......++- ++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~--~~~ 219 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLIN--AET 219 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccC--HHH
Confidence 47999999999999999998888999999986421 11 11 135899999999999999997777766662 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
...++++.++|+++-+.....+.+.+.+.+..
T Consensus 220 l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~ 251 (314)
T PRK06932 220 LALMKPTAFLINTGRGPLVDEQALLDALENGK 251 (314)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHcCC
Confidence 56788999999999987777777877776543
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=79.13 Aligned_cols=191 Identities=18% Similarity=0.204 Sum_probs=113.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch-hHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
||+|||+|+-|.+-+.+|..+|.+|++--|.... .+...++|..+. +.+|+++.+|+|++-+|+ ..-.+++. +.+
T Consensus 20 ~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PD-e~q~~vy~--~~I 95 (338)
T COG0059 20 KVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPD-EQQKEVYE--KEI 95 (338)
T ss_pred eEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCch-hhHHHHHH--HHh
Confidence 7999999999999999999999999987765444 566777787764 899999999999999987 55677773 388
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-Ecc-cCCChHhh----cccceEEEe-cC--CHHHHHHHHHHHH
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAP-VSGSKQPA----ETGQLVILS-AG--EKALYDEAISALN 151 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~----~~g~~~~~~-~g--~~~~~~~~~~ll~ 151 (291)
.|.+++|+.+ ..+.+.......+ .+..++..+ -+| -.|..... ..|-..++. -. +....+.......
T Consensus 96 ~p~Lk~G~aL-~FaHGfNihf~~i---~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~Ak 171 (338)
T COG0059 96 APNLKEGAAL-GFAHGFNIHFGLI---VPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAYAK 171 (338)
T ss_pred hhhhcCCceE-Eeccccceeccee---cCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHHHH
Confidence 9999888854 4455543333222 122344433 455 23332221 112222221 11 3456667777777
Q ss_pred Hhccce--EeeCCCChhHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022834 152 VIGKKA--FFLGEVGNGAKMKLVV--NMIMGCMMNTFSEGLVLAEKSGLDPRT 200 (291)
Q Consensus 152 ~~g~~~--~~~~~~~~a~~~k~~~--n~~~~~~~~~~~E~~~~~~~~g~~~~~ 200 (291)
.+|..- ++-.......-.-++. -.+-.+...++.-+...+.+.|.+|+.
T Consensus 172 giGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~ 224 (338)
T COG0059 172 GIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPEL 224 (338)
T ss_pred hcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHH
Confidence 777331 1111111111111110 011112345555556667788888873
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=83.22 Aligned_cols=109 Identities=13% Similarity=0.139 Sum_probs=82.0
Q ss_pred CeEEEEecChhhHHHHHHHH-hCCCcEEEEcCCcchh-HHH-HHCC------------CcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKC-DEL-VAHG------------ATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~-~~l-~~~g------------~~~~~~~~~~~~~~dvvii~vp 65 (291)
.+|||||+|++|..+|+.+. .-|.+|..||++.... ... ...+ .....+.++++++||+|++++|
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~P 245 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPV 245 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCC
Confidence 37999999999999999986 5688999999876421 111 1111 1223589999999999999999
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
-..+...++- .+....++++.++|+++-+.......+.+.+...
T Consensus 246 lt~~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg 289 (386)
T PLN02306 246 LDKTTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKAN 289 (386)
T ss_pred CChhhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 8777777762 2556678899999999988777777777777554
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-07 Score=75.70 Aligned_cols=115 Identities=14% Similarity=0.182 Sum_probs=80.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCC---Cc-EEEEcCCcchhHHHHHCCCcccCCHHHH-HhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG---FK-VTVWNRTLSKCDELVAHGATVGGSPAEV-IKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g---~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~~dvvii~vp~~~~~~~v~~ 75 (291)
+||+|||+|.||..++..|.+.+ ++ +.+++|++++.+.+.+. ..+..+++++ ...+|+|+.|- .+..+++..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A-~~~av~e~~- 79 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAA-GQQAIAEHA- 79 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECC-CHHHHHHHH-
Confidence 58999999999999999987642 45 44678888888777664 7788899996 57899999999 667777766
Q ss_pred ccCccccccCCCcEEEEcCCC---CHHHHHHHHHHHHhcCCc-EEEcccCCC
Q 022834 76 DKGGVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGH-FLEAPVSGS 123 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 123 (291)
+. .|..+.-++.+|.+ .+...+++.+...+.+.+ |+...-.++
T Consensus 80 --~~---iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigG 126 (267)
T PRK13301 80 --EG---CLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAG 126 (267)
T ss_pred --HH---HHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHh
Confidence 33 34556655656655 445566666665555543 444443443
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.8e-08 Score=84.11 Aligned_cols=91 Identities=21% Similarity=0.350 Sum_probs=66.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC-CCccc--CCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATVG--GSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g~~~~--~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++|+|||+|.||..++..|...| ++|++++|++++.+.+.+. |.... ++..+.+.++|+||.|+|.+.. ..++
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~-- 255 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIV-- 255 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHH--
Confidence 58999999999999999999865 6899999999988777654 54332 2345667789999999977554 3333
Q ss_pred cCccccc-cCCCcEEEEcCC
Q 022834 77 KGGVLEQ-ICPGKGYIDMST 95 (291)
Q Consensus 77 ~~~l~~~-l~~~~~vv~~s~ 95 (291)
+..... ..++.+++|++.
T Consensus 256 -~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 256 -ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred -HHHHhhCCCCCeEEEEeCC
Confidence 222211 225679999885
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-07 Score=69.50 Aligned_cols=99 Identities=27% Similarity=0.384 Sum_probs=66.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHh-CCCcEE-EEcCCcc-hh----HHHH---HCCCcccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLR-NGFKVT-VWNRTLS-KC----DELV---AHGATVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~-~g~~V~-~~~r~~~-~~----~~l~---~~g~~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|+|+ |+||..++..+.+ .++++. +++++++ .. ..+. ..++.+.++.+++.+.+|++|-++ .+..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 89999999 9999999999998 678855 5677762 11 1111 236778899999999999999998 7777
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCH-HHHHHHHH
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDH-ETSIKISR 106 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~-~~~~~~~~ 106 (291)
+.+.+ +.+. +.+..+|..+|+.. ...+.+.+
T Consensus 80 ~~~~~---~~~~---~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 80 VYDNL---EYAL---KHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp HHHHH---HHHH---HHT-EEEEE-SSSHHHHHHHHHH
T ss_pred hHHHH---HHHH---hCCCCEEEECCCCCHHHHHHHHH
Confidence 77766 3333 34667777777764 44444444
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-08 Score=75.82 Aligned_cols=68 Identities=22% Similarity=0.244 Sum_probs=55.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCCc-EEEEcCCcchhHHHHHCC----C--cccCCHHHHHhhCCEEEEecCCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHG----A--TVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g----~--~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
++.|||+|.+|.+++..|.+.|.+ |++++|+.++++.+.+.. + ...++..+.+.++|+||.|+|.+..
T Consensus 14 ~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 14 RVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 789999999999999999999976 999999999999887642 1 2234555677899999999977543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=80.73 Aligned_cols=112 Identities=23% Similarity=0.252 Sum_probs=78.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC----CCcccCCHHHH-HhhCCEEEEecCCHH--HHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAEV-IKKCTITIGMLADPA--AALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g~~~~~~~~~~-~~~~dvvii~vp~~~--~~~~v~ 74 (291)
++.|+|+|.+|.+++..|++.|++|++++|++++++.+.+. +.....+..+. ..++|+||.|+|... ..+++.
T Consensus 119 ~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~ 198 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPP 198 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCC
Confidence 68999999999999999999999999999999888777653 22122233332 357999999998642 111111
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
+ -...++++.+++|++...+.+ .+.+...++|+.+++.-
T Consensus 199 ~----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG~ 237 (270)
T TIGR00507 199 V----PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDGL 237 (270)
T ss_pred C----CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCCH
Confidence 0 123466888999998876655 46666777788776544
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.6e-07 Score=78.80 Aligned_cols=93 Identities=14% Similarity=0.180 Sum_probs=64.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHH----HC--------CCcccCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----AH--------GATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~~--------g~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..+|..++..|+ +|+++|++++..+... +. .++...+.++ +++||+||++++.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 799999999999999999999887 8999999766544111 11 1233456665 68999999999732
Q ss_pred H---------------HHHHHHhccCccccccCCCcEEEEcCCCCH
Q 022834 68 A---------------AALSVVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 68 ~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
. .++++. +++.+.. ++.+++..||-..
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~---~~I~~~~-p~~~iIv~tNP~d 122 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVT---GRIMEHS-PNPIIVVVSNPLD 122 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecCcHH
Confidence 2 234444 4555554 5667777776543
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-07 Score=83.77 Aligned_cols=147 Identities=18% Similarity=0.194 Sum_probs=94.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCC------cchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT------LSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~------~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
++|+|||+|++|.+.|.+|...|++|++--|. .+..+.+.+.|..+ .+.+|+++.||+|++.+|+. .-..+.
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~~v~ 114 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHSDVV 114 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHHHHH
Confidence 48999999999999999999999999955443 34555566678766 67999999999999999886 455566
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-Ecc-cCCChHhhc----ccceEEE-ec--C--CHHHH
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAP-VSGSKQPAE----TGQLVIL-SA--G--EKALY 143 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~----~g~~~~~-~~--g--~~~~~ 143 (291)
+++.+.++++..+. .|-+...... ...+..++.++ -+| -.|+..... .|-...+ +- . +....
T Consensus 115 ---~~i~p~LK~Ga~L~-fsHGFni~~~---~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a~ 187 (487)
T PRK05225 115 ---RAVQPLMKQGAALG-YSHGFNIVEV---GEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGM 187 (487)
T ss_pred ---HHHHhhCCCCCEEE-ecCCceeeeC---ceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchHH
Confidence 78889998887654 4555332111 11222345444 555 333322211 1222222 22 1 33456
Q ss_pred HHHHHHHHHhccc
Q 022834 144 DEAISALNVIGKK 156 (291)
Q Consensus 144 ~~~~~ll~~~g~~ 156 (291)
+.......++|..
T Consensus 188 ~~ala~a~~iG~~ 200 (487)
T PRK05225 188 AIAKAWAAATGGH 200 (487)
T ss_pred HHHHHHHHHhCCC
Confidence 6677777777755
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.8e-07 Score=78.67 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=63.5
Q ss_pred CeEEEEecChhhH-HHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc---c---------------c--CCHHHH---Hhh
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRNGFKVTVWNRTLSKCDELVAHGAT---V---------------G--GSPAEV---IKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~---~---------------~--~~~~~~---~~~ 56 (291)
|||.++|+|+||+ .++..|.+.|++|+++|+++++.+.++++|.. . . .+.+++ +.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 9999999999998 45888888999999999999999999887631 0 1 122222 337
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCC--------cEEEEcCCC
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPG--------KGYIDMSTV 96 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~--------~~vv~~s~~ 96 (291)
+|+|.+++ ++.+.+.+. ..+.+.+.+. -.|+.|-|+
T Consensus 81 ~dlvt~~v-~~~~~~s~~---~~l~~~L~~R~~~~~~~~~~VlsceN~ 124 (381)
T PRK02318 81 ADLVTTAV-GPNILPFIA---PLIAKGLKKRKAQGNTKPLNIIACENM 124 (381)
T ss_pred CCEEEeCC-CcccchhHH---HHHHHHHHHHHHcCCCCCCEEEecCCh
Confidence 89999998 555555555 4444443222 256666555
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.4e-06 Score=66.87 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=122.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|.++|||.|..|.+......+.++.+. +..|++++++.+.+.-.....+.+...+-.+++|+-+|+. .+..+. .
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~va---a- 85 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVA---A- 85 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHH---H-
Confidence 579999999999996655555556655 3478888888876642222223333334458888888775 344443 1
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-Ecc---cCCChHhhc--ccceEEEecCCHHHHHHHHHHHHHh
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAP---VSGSKQPAE--TGQLVILSAGEKALYDEAISALNVI 153 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~--~g~~~~~~~g~~~~~~~~~~ll~~~ 153 (291)
.....++++++++|...... +...+...|+.-. -+| ..|-+.... .++...+..+|+--...++.+...+
T Consensus 86 -~~~~rpg~iv~HcSga~~~~---il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~em 161 (289)
T COG5495 86 -TSLNRPGTIVAHCSGANGSG---ILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEM 161 (289)
T ss_pred -hcccCCCeEEEEccCCCchh---hhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHHh
Confidence 12345889999998765432 3334445554332 233 223333333 2333334456777778899999999
Q ss_pred ccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 022834 154 GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPR 199 (291)
Q Consensus 154 g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~ 199 (291)
|.+++.+-+ +.-.......|...+.....+.++.++....|.|.-
T Consensus 162 gg~~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~ 206 (289)
T COG5495 162 GGEPFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQP 206 (289)
T ss_pred CCCceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCc
Confidence 998877654 566667777788888889999999999999998753
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-07 Score=81.00 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=69.8
Q ss_pred eEEEEecChhhHHHHHHHHh--CCCcEEEEcCCcchhHHHHHC----C--CcccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
+++|||+|.+|...+..+.. ...+|.+|+|++++++.+.+. | +..+.+++++++++|+|++|+|..+ .+
T Consensus 130 ~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~---P~ 206 (325)
T TIGR02371 130 VLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK---PV 206 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---cE
Confidence 68999999999998877765 345799999999998877652 5 4557899999999999999997632 33
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHH
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHET 100 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~ 100 (291)
+ . ..++++|..|..+++..|..
T Consensus 207 ~---~--~~~l~~g~~v~~vGs~~p~~ 228 (325)
T TIGR02371 207 V---K--ADWVSEGTHINAIGADAPGK 228 (325)
T ss_pred e---c--HHHcCCCCEEEecCCCCccc
Confidence 3 1 23467899988777766643
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-06 Score=74.51 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=73.6
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCc--chhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTL--SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||..+++.+.+. +.++. ++++.. ++.......+...+++.+++..+.|+|+.|+|...+ .+..
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~~-- 78 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEHV-- 78 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHHH--
Confidence 7999999999999999999875 45654 334322 222222223567778888874568999999977544 4444
Q ss_pred cCccccccCCCcEEEEcCCC---CHHHHHHHHHHHHhcCCcEE-EcccCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGHFL-EAPVSGS 123 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 123 (291)
...+..|+.++..+.+ .+...+.+.+...+.|..+. .....++
T Consensus 79 ----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg 125 (265)
T PRK13303 79 ----VPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGG 125 (265)
T ss_pred ----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhC
Confidence 2334566666655554 34455667777767676544 4443344
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=73.61 Aligned_cols=110 Identities=18% Similarity=0.188 Sum_probs=72.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHh-CCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLR-NGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~-~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|||+|+|+ |.||..++..+.+ .++++. ++|+++++.......++..+++.+++++++|+|+.++|.. ...+++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~-~~~~~~--- 77 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPE-ATLENL--- 77 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHH-HHHHHH---
Confidence 79999998 9999999999886 467755 5788876654442235666788888888899999888554 445554
Q ss_pred CccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEEEcc
Q 022834 78 GGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
. ..+..+..++..+++ .+...+++.+ .. ++...+-+|
T Consensus 78 ~---~al~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~ 115 (257)
T PRK00048 78 E---FALEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAP 115 (257)
T ss_pred H---HHHHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEEC
Confidence 2 223455544444444 5666666665 32 344444444
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.9e-07 Score=76.15 Aligned_cols=73 Identities=22% Similarity=0.224 Sum_probs=61.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.+|+|||. |.||..|+..|.++|++|++|... +.++.+.+++||+||.|++++..++..+
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~----- 219 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEF----- 219 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHH-----
Confidence 37999999 999999999999999999999421 1367888999999999999877655444
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
+++|+++||++..
T Consensus 220 ----ik~GavVIDvgin 232 (284)
T PRK14179 220 ----VKEGAVVIDVGMN 232 (284)
T ss_pred ----ccCCcEEEEecce
Confidence 6789999998865
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=73.98 Aligned_cols=100 Identities=9% Similarity=0.125 Sum_probs=67.8
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCc-chhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTL-SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
+||+|||+|+||..++..+.+. ++++. ++++++ ++.. ...+.....+..++..++|+|++|+|+..+.+.+.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~--- 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA--- 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH---
Confidence 4899999999999999999765 67866 578885 3322 12244444566677778999999999877766555
Q ss_pred CccccccCCCcEEEEcCCC---CHHHHHHHHHHHH
Q 022834 78 GGVLEQICPGKGYIDMSTV---DHETSIKISRAIT 109 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~ 109 (291)
+.+..+.-+|+.... .|...+.+.+...
T Consensus 79 ----~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk 109 (324)
T TIGR01921 79 ----PYFAQFANTVDSFDNHRDIPRHRQVMDAAAK 109 (324)
T ss_pred ----HHHHcCCCEEECCCcccCCHHHHHHHHHHHH
Confidence 335566677765432 3445555555444
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.3e-07 Score=76.61 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=62.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHH----C----C--Ccc--cCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA----H----G--ATV--GGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~----~----g--~~~--~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..++..++..|+ +|.++|+++++++.... . + .++ ..+. +.+++||+||+++..+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p 81 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP 81 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence 699999999999999999998876 99999998876643221 1 1 122 2344 4578999999996321
Q ss_pred ---------------HHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 ---------------AAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ---------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
..+.++. +++.+.. ++.+++..||.
T Consensus 82 ~~~~~~r~~~~~~n~~i~~~i~---~~i~~~~-~~~~viv~tNP 121 (307)
T PRK06223 82 RKPGMSRDDLLGINAKIMKDVA---EGIKKYA-PDAIVIVVTNP 121 (307)
T ss_pred CCcCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecCc
Confidence 1244454 4555554 55666666654
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.4e-07 Score=76.51 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=71.1
Q ss_pred eEEEEecChhhHHHHHHHHh-CC-CcEEEEcCCcchhHHHHHC----CCcc-cCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH----GATV-GGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~----g~~~-~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
+++|||+|.+|...+..+.. .+ .+|.+|+|++++++.+.++ +..+ ..+.++++.++|+|+.|+|... .++
T Consensus 127 ~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---Pl~ 203 (304)
T PRK07340 127 DLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---PVY 203 (304)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---cee
Confidence 79999999999999999975 45 4699999999998887653 3333 4678888999999999997653 344
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHH
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSI 102 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~ 102 (291)
.. .+++|+.|..+++..|...|
T Consensus 204 ---~~---~~~~g~hi~~iGs~~p~~~E 225 (304)
T PRK07340 204 ---PE---AARAGRLVVAVGAFTPDMAE 225 (304)
T ss_pred ---Cc---cCCCCCEEEecCCCCCCccc
Confidence 22 35799999888877775433
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.5e-07 Score=68.11 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=61.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
++.|+|+|.+|..+|+.|...|.+|++++++|-++-+..-+|.++. +.+++++.+|++|.++.....+.. +..
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~------e~~ 97 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITG------EHF 97 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-H------HHH
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCH------HHH
Confidence 6889999999999999999999999999999988777777888875 688999999999998855322111 122
Q ss_pred cccCCCcEEEEcCCC
Q 022834 82 EQICPGKGYIDMSTV 96 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~ 96 (291)
..++++.++.+.+..
T Consensus 98 ~~mkdgail~n~Gh~ 112 (162)
T PF00670_consen 98 RQMKDGAILANAGHF 112 (162)
T ss_dssp HHS-TTEEEEESSSS
T ss_pred HHhcCCeEEeccCcC
Confidence 446688888877655
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=78.29 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=69.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
.+++|||+|.+|..++..+...|.+|+++++++.+.......|... .+.+++++.+|+|++|+.+..-+. .+.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~iI~------~e~ 327 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDIIT------LEH 327 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccccC------HHH
Confidence 3799999999999999999999999999999887765444557654 367888999999999985422221 133
Q ss_pred ccccCCCcEEEEcCCCC
Q 022834 81 LEQICPGKGYIDMSTVD 97 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~ 97 (291)
...++++.++++++-..
T Consensus 328 ~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 328 MRRMKNNAIVGNIGHFD 344 (476)
T ss_pred HhccCCCcEEEEcCCCc
Confidence 45567899999988774
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.2e-06 Score=75.11 Aligned_cols=98 Identities=20% Similarity=0.144 Sum_probs=73.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+|+|+|+|.+|..++..+...|.+|+++++++.+.......|..+. +.+++++.+|++|.+++....+..- ..
T Consensus 197 ~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~~------~~ 269 (406)
T TIGR00936 197 TVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRGE------HF 269 (406)
T ss_pred EEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHHH------HH
Confidence 7999999999999999999999999999999887666666676554 5677888999999998664444321 23
Q ss_pred cccCCCcEEEEcCCCCH-HHHHHHHH
Q 022834 82 EQICPGKGYIDMSTVDH-ETSIKISR 106 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~-~~~~~~~~ 106 (291)
..++++.++++.+-... .....+.+
T Consensus 270 ~~mK~GailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 270 ENMKDGAIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred hcCCCCcEEEEECCCCceeCHHHHHH
Confidence 45678889998776543 33444444
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.8e-06 Score=75.94 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=70.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+++|+|+|.+|..++..+...|.+|+++++++.+.......|..+ .+.+++++.+|++|.|+.....+.. ...
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~------~~~ 286 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITA------EHM 286 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHH------HHH
Confidence 699999999999999999999999999999988876665667664 3678888899999999865443332 233
Q ss_pred cccCCCcEEEEcCCCC
Q 022834 82 EQICPGKGYIDMSTVD 97 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~ 97 (291)
..++++.++++.+...
T Consensus 287 ~~mK~GailiNvG~~d 302 (425)
T PRK05476 287 EAMKDGAILANIGHFD 302 (425)
T ss_pred hcCCCCCEEEEcCCCC
Confidence 4567888998877654
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-06 Score=74.39 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=64.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHHC--------C--CcccCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH--------G--ATVGGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~--------g--~~~~~~~~~~~~~~dvvii~vp~~~ 68 (291)
+||+|||+|.+|..++..|+..| +++.++|+++++++.+..+ + ..+.....+.+.+||+||++++.+.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 58999999999999999999998 6899999999887765432 1 1222233345789999999986431
Q ss_pred ---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 ---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
-++++. +.+.+.- ++.+++..||-
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~---~~i~~~~-~~~~vivvsNP 119 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIV---PKIKASG-FDGIFLVASNP 119 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHH---HHHHHhC-CCeEEEEecCh
Confidence 134444 4444443 56666766643
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.2e-07 Score=68.32 Aligned_cols=65 Identities=17% Similarity=0.326 Sum_probs=50.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHC----------CCcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~----------g~~~~~~~~~~~~~~dvvii~vp 65 (291)
|||+|||+ |.+|..++..|...+. ++.++|+++++++...-+ ...+.....+.+++||+|+++..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 89999999 9999999999998874 799999997766543321 12333355667789999999873
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-06 Score=64.86 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=58.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhC-CCcEEEE-cCCcchhHHHHHCCCcc----cC--CHHHH-HhhCCEEEEecCCHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRN-GFKVTVW-NRTLSKCDELVAHGATV----GG--SPAEV-IKKCTITIGMLADPAAAL 71 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~-g~~V~~~-~r~~~~~~~l~~~g~~~----~~--~~~~~-~~~~dvvii~vp~~~~~~ 71 (291)
||+|+|+ |.+|..++..|.+. ++++..+ +++.++.+.+...+... .. +..+. ..++|+||+|+|...+.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 6999995 99999999999884 7787655 65543333333322111 11 11122 247999999998865444
Q ss_pred HHHhccCccccccCCCcEEEEcCCC
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
++ ..+.+.+.+|++++|+|+.
T Consensus 81 -~~---~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 81 -IA---PLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred -HH---HHHHhhhcCCCEEEECCcc
Confidence 43 2334455789999999987
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=78.35 Aligned_cols=66 Identities=11% Similarity=0.199 Sum_probs=51.9
Q ss_pred CeEEEEecChhhHHHHH--HH----HhCCCcEEEEcCCcchhHHHHHC------------CCcccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAISM--NL----LRNGFKVTVWNRTLSKCDELVAH------------GATVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~--~l----~~~g~~V~~~~r~~~~~~~l~~~------------g~~~~~~~~~~~~~~dvvii 62 (291)
|||+|||+|.||.+++. .+ ..+|++|.+||+++++++..... .+..+++..+++++||+||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 79999999999998665 34 44678999999999887764331 13346677889999999999
Q ss_pred ecCC
Q 022834 63 MLAD 66 (291)
Q Consensus 63 ~vp~ 66 (291)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9974
|
linked to 3D####ucture |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=75.24 Aligned_cols=110 Identities=13% Similarity=0.185 Sum_probs=82.1
Q ss_pred eEEEEecChhhHHHHHHHHhC-C-CcEEEEcCCcchhHHHHH----CC---CcccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVA----HG---ATVGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~----~g---~~~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
.++|||+|.++......+..- + -+|.+|+|++++.+.+.. .+ +..++|.++++++||+|+.|+|... .
T Consensus 132 ~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---P 208 (330)
T COG2423 132 TLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---P 208 (330)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---C
Confidence 479999999999999999863 3 479999999999988764 23 4677899999999999999997743 4
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
++ ...++++|+.|...++..|...+--.+.+...+..++|.+
T Consensus 209 il-----~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 209 VL-----KAEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred ee-----cHhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 44 2346779999888877766554444444444445566665
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=98.35 E-value=5e-06 Score=70.32 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=71.4
Q ss_pred CeEEEEe-cChhhHHHHHHHHh-CCCcEE-EEcCC-cchh----HHHHH---CCCcccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLR-NGFKVT-VWNRT-LSKC----DELVA---HGATVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~-~g~~V~-~~~r~-~~~~----~~l~~---~g~~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|+| +|.||..+++.+.+ .++++. ++||. ++.. ..+.. .++.++++.+++...+|+||.|+|+ ..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p-~~ 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP-EG 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh-HH
Confidence 6999999 69999999999986 567755 56753 2221 11111 3566778888875568999999955 44
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEEEcc
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
..+.+ . ..+..+..+|..+++ .+...+++.+...+.++.++-+|
T Consensus 81 ~~~~~---~---~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~ 125 (266)
T TIGR00036 81 VLNHL---K---FALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAP 125 (266)
T ss_pred HHHHH---H---HHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEEC
Confidence 44444 2 234455555543444 55666677666555556565554
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=73.74 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=50.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHH----HHHCC-----CcccCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDE----LVAHG-----ATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~----l~~~g-----~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.+|..++..|+.+| ++|.++|+++++++. +.... ..+..+..+.+++||++|+|++.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 89999999999999999999999 589999999877653 22111 111122335678999999999753
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-06 Score=75.49 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=70.4
Q ss_pred eEEEEecChhhHHHHHHHHh-CC-CcEEEEcCCcchhHHHHHC-----CC--cccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GA--TVGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~-----g~--~~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
+++|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+. ++ ....+.+++++++|+|+.|+|.. ..
T Consensus 129 ~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~---~p 205 (325)
T PRK08618 129 TLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK---TP 205 (325)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC---Cc
Confidence 69999999999999888754 44 4699999999998877652 33 34677888999999999999764 23
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSI 102 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~ 102 (291)
++ . ..+++|+.|+.+.+..|...+
T Consensus 206 ~i----~--~~l~~G~hV~~iGs~~p~~~E 229 (325)
T PRK08618 206 VF----S--EKLKKGVHINAVGSFMPDMQE 229 (325)
T ss_pred ch----H--HhcCCCcEEEecCCCCccccc
Confidence 44 2 456789999888777665443
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-06 Score=80.95 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=65.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--CCc----ccCCHHHHHhhCCEEEEecCCHHH--HH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--GAT----VGGSPAEVIKKCTITIGMLADPAA--AL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--g~~----~~~~~~~~~~~~dvvii~vp~~~~--~~ 71 (291)
.+|+|||+|.||..++..|...|. +|++++|+.++++.+.+. +.. ..++..+.+.++|+||.|+|.+.. .+
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~ 346 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPLFLK 346 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCeeCH
Confidence 379999999999999999999996 699999999999888764 322 234566778899999999854332 23
Q ss_pred HHHhccCcccccc---CCCcEEEEcCCC
Q 022834 72 SVVFDKGGVLEQI---CPGKGYIDMSTV 96 (291)
Q Consensus 72 ~v~~~~~~l~~~l---~~~~~vv~~s~~ 96 (291)
+.+ +.+.+.- .+..++||++..
T Consensus 347 e~l---~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 347 EHV---EALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred HHH---HHhhhcccccCCCeEEEEeCCC
Confidence 333 2222110 123578887654
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.2e-07 Score=80.91 Aligned_cols=103 Identities=19% Similarity=0.297 Sum_probs=72.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcccCCHHH--HHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAE--VIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~--~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
++++|+|+|.+|.+++..|.+.|++|++++|++++++.+.+. +.... +..+ .+.++|+||.|+|....+...
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g~~~~~~---- 407 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPSVTIPKA---- 407 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCCCcchhH----
Confidence 478999999999999999999999999999999888877653 22211 1222 146799999999876533221
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
+. .+++|++...+.+. +.+...+.|+..++.
T Consensus 408 ------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~G 438 (477)
T PRK09310 408 ------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIYG 438 (477)
T ss_pred ------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEECc
Confidence 11 38899887765443 445566667766543
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-06 Score=75.26 Aligned_cols=91 Identities=5% Similarity=0.099 Sum_probs=69.8
Q ss_pred eEEEEecChhhHHHHHHHHhC-C-CcEEEEcCCcchhHHHHHC-----C--CcccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
+++|||+|..|...+..+..- . .+|.+|+|++++++.+.+. | +.+++++++++.+||+|+.|+|..+ .
T Consensus 119 ~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~---P 195 (301)
T PRK06407 119 NFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT---P 195 (301)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC---c
Confidence 689999999999999998863 3 3699999999998877543 4 4456899999999999999996532 3
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHET 100 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~ 100 (291)
++ + ..++++|..|....+..|..
T Consensus 196 ~~---~--~~~l~pg~hV~aiGs~~p~~ 218 (301)
T PRK06407 196 IF---N--RKYLGDEYHVNLAGSNYPNR 218 (301)
T ss_pred Ee---c--HHHcCCCceEEecCCCCCCc
Confidence 33 1 23567888888777766644
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.7e-06 Score=72.28 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=77.0
Q ss_pred CeEEEEecChhh-HHHHHHHHhCCC--c-EEEEcCCcchhHHHHHC-CC-cccCCHHHHHhh--CCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMG-KAISMNLLRNGF--K-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIKK--CTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG-~~la~~l~~~g~--~-V~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~~--~dvvii~vp~~~~~~~ 72 (291)
|||||||+|.++ ......+.+.+. . |-++|+++++++.+.++ |+ ..+++.++++++ .|+|++|+|+..+.+-
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~ 83 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAEL 83 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHH
Confidence 589999999555 568888888663 4 55779999999888765 66 478899998875 5999999999888776
Q ss_pred HHhccCccccccCCCcEEEEc--CCCCHHHHHHHHHHHHhcCCcE
Q 022834 73 VVFDKGGVLEQICPGKGYIDM--STVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~--s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
+. ..+..|+.|+-- -+......+++.+...+.+..+
T Consensus 84 ~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 84 AL-------AALEAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred HH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 65 334456555531 1234556667766666655544
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-06 Score=74.53 Aligned_cols=91 Identities=20% Similarity=0.280 Sum_probs=70.0
Q ss_pred eEEEEecChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHHHC----CCc--ccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAH----GAT--VGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~----g~~--~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
+++|||+|..+...+..+... -.+|++|+|++++++.+.+. +.. .+++.+++++++|+|+.|++..+ .+
T Consensus 130 ~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~---P~ 206 (315)
T PRK06823 130 AIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE---PL 206 (315)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC---ce
Confidence 689999999999999988763 24799999999998876642 333 36789999999999999996532 33
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHH
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHET 100 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~ 100 (291)
+ + ..++++|+.|...++..|..
T Consensus 207 ~---~--~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 207 L---Q--AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred e---C--HHHcCCCcEEEecCCCCccc
Confidence 3 1 23567899998888777654
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.3e-06 Score=73.96 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=70.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+++|+|+|.+|..++..+...|.+|+++++++.+.+.....|.... +.++.++.+|+||.|+..+..+..- ..
T Consensus 204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~~------~l 276 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITGE------HF 276 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHHH------HH
Confidence 7899999999999999999999999999999999888888887554 4567788999999999665444332 23
Q ss_pred cccCCCcEEEEcCCC
Q 022834 82 EQICPGKGYIDMSTV 96 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~ 96 (291)
..++++.++++.+..
T Consensus 277 ~~mk~GgilvnvG~~ 291 (413)
T cd00401 277 EQMKDGAIVCNIGHF 291 (413)
T ss_pred hcCCCCcEEEEeCCC
Confidence 456788888887754
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-06 Score=72.75 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=62.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHH--------CC--Ccc--cCCHHHHHhhCCEEEEec--C
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVA--------HG--ATV--GGSPAEVIKKCTITIGML--A 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~--------~g--~~~--~~~~~~~~~~~dvvii~v--p 65 (291)
+||+|||+|.||..++..++..| .++.++|+++++++...- .+ ..+ ..+.+ .+++||+||++. |
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag~~ 84 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAGVQ 84 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCCCC
Confidence 69999999999999999999888 689999998876542111 01 122 34555 678999999998 2
Q ss_pred C-H------------HHHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 66 D-P------------AAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 66 ~-~------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
. + ..+.++. +.+.+.. ++.+++..||..
T Consensus 85 ~~~g~~r~dll~~n~~i~~~i~---~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 85 RKEEMTREDLLTINGKIMKSVA---ESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecChH
Confidence 2 1 2244555 4555553 666667666643
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.2e-06 Score=74.49 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=72.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHH-HHHHhccCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA-LSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~-~~v~~~~~~l 80 (291)
+++|+|+|.+|..++..+...|.+|+++++++.+.......|..+. +.+++++.+|++|.++.....+ .+.
T Consensus 256 tVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~e~------- 327 (477)
T PLN02494 256 VAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMVDH------- 327 (477)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHHHH-------
Confidence 6899999999999999999999999999999877666666676654 6778889999999987553322 223
Q ss_pred ccccCCCcEEEEcCCC-CHHHHHHHHH
Q 022834 81 LEQICPGKGYIDMSTV-DHETSIKISR 106 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~-~~~~~~~~~~ 106 (291)
...++++.++++.+.. .......+.+
T Consensus 328 L~~MK~GAiLiNvGr~~~eID~~aL~~ 354 (477)
T PLN02494 328 MRKMKNNAIVCNIGHFDNEIDMLGLET 354 (477)
T ss_pred HhcCCCCCEEEEcCCCCCccCHHHHhh
Confidence 3456788999998874 2333344433
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-06 Score=74.81 Aligned_cols=89 Identities=17% Similarity=0.307 Sum_probs=66.8
Q ss_pred eEEEEecChhhHHHHHHHHh-CC-CcEEEEcCCcchhHHHHHC-----CCc--ccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GAT--VGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~-----g~~--~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
+++|||+|.+|...+..|.. .+ .+|++|+|++++++.+.+. |.. ..++.++++.++|+|+.|+|... .
T Consensus 131 ~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~---p 207 (326)
T TIGR02992 131 VVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET---P 207 (326)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC---c
Confidence 68999999999999999974 56 3699999999999887653 443 35788888999999999997633 2
Q ss_pred HHhccCccccccCCCcEEEEcCCCCH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
++ . ...+++++.+...+.-.|
T Consensus 208 ~i---~--~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 208 IL---H--AEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred Ee---c--HHHcCCCcEEEeeCCCCC
Confidence 33 1 134668888776655444
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=98.24 E-value=4e-06 Score=65.58 Aligned_cols=72 Identities=26% Similarity=0.326 Sum_probs=56.0
Q ss_pred eEEEEecChh-hHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~m-G~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+|.|||+|.| |..++..|.+.|.+|++.+|+. .+..+.+.++|+||.|++.+. ++ .
T Consensus 46 ~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii---~-- 102 (168)
T cd01080 46 KVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LV---K-- 102 (168)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----ee---c--
Confidence 7999999997 8889999999999999999873 245667889999999997753 22 1
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
...++++.+++|++..
T Consensus 103 ~~~~~~~~viIDla~p 118 (168)
T cd01080 103 GDMVKPGAVVIDVGIN 118 (168)
T ss_pred HHHccCCeEEEEccCC
Confidence 1134567888888755
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-05 Score=68.78 Aligned_cols=108 Identities=11% Similarity=0.142 Sum_probs=78.8
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCC----HHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLAD----PAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~----~~~~~~ 72 (291)
.||+|||+ .||...+..+.+. ++++. ++|+++++++.+.++ |+..+++.++++.+.|++++++|+ ..+.+-
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 48999999 7899999999875 46755 679999999988865 788889999999888998888854 244433
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+. ..+..|+.|+----......+++.+...+.++.+.
T Consensus 83 a~-------~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 83 AR-------ALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HH-------HHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 33 23446665554333346777778777777777655
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-06 Score=73.76 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=65.2
Q ss_pred CeEEEEecChhhHHHHHHHHh-CC-CcEEEEcCCcchhHHHHHC-----CCc--ccCCHHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GAT--VGGSPAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~-----g~~--~~~~~~~~~~~~dvvii~vp~~~~~~ 71 (291)
++|+|||+|.+|...+..+.. .+ .+|++|+|++++++.+.+. |+. ..++.++++.++|+|+.|+|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~--- 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE--- 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC---
Confidence 479999999999999988875 44 5799999999999988752 443 35788888999999999997643
Q ss_pred HHHhccCccccccCCCcEEEEcCCCC
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
.++ . ...+++++.|..+....
T Consensus 210 p~i---~--~~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 PIL---K--AEWLHPGLHVTAMGSDA 230 (330)
T ss_pred cEe---c--HHHcCCCceEEeeCCCC
Confidence 233 1 12355777666544433
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.5e-06 Score=78.57 Aligned_cols=68 Identities=31% Similarity=0.471 Sum_probs=54.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-CCcc--cCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATV--GGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~~~--~~~~~~~~~~~dvvii~vp~~~ 68 (291)
++|+|||+|.||..++..|...|. +|++++|++++++.+.+. |... ..+..+.+.++|+||.|+|.+.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 479999999999999999999997 799999999988777654 4322 2344566778999999997654
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.4e-05 Score=68.95 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=71.3
Q ss_pred CeEEEEecChhhH-HHHHHHHh-CCCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHh--hCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGK-AISMNLLR-NGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~-~g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~ 74 (291)
+||||||+|.+|. ..+..+.+ .+.++. ++|+++++.. ... +...+++.+++++ +.|+|++|+|...+.+-+.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~ 82 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK 82 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 4899999999998 45666655 367765 6798876643 122 4567789999985 5799999999988877666
Q ss_pred hccCccccccCCCcEEE-E-cCCCCHHHHHHHHHHHHhcCCcE
Q 022834 75 FDKGGVLEQICPGKGYI-D-MSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv-~-~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
. .+..|+.|+ . --.......+++.+...+.++.+
T Consensus 83 ---~----al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 83 ---A----ALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred ---H----HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 2 234555544 3 11234456666766666666544
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=3e-06 Score=73.93 Aligned_cols=90 Identities=24% Similarity=0.313 Sum_probs=68.1
Q ss_pred eEEEEecChhhHHHHHHHHhC-C-CcEEEEcCCcchhHHHHHC-----C--CcccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
+++|||+|.+|...+..+... + ..|.+|+|++++.+.+.+. + +..+++.+++++ +|+|++|+|... .
T Consensus 131 ~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~---P 206 (326)
T PRK06046 131 VVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK---P 206 (326)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC---c
Confidence 699999999999999999753 3 3588999999998877653 3 334678888886 999999998742 3
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHET 100 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~ 100 (291)
++ . ..++++|+.|..+++..|..
T Consensus 207 ~~---~--~~~l~~g~hV~~iGs~~p~~ 229 (326)
T PRK06046 207 VV---K--AEWIKEGTHINAIGADAPGK 229 (326)
T ss_pred Ee---c--HHHcCCCCEEEecCCCCCcc
Confidence 33 1 23467889888777766643
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=5e-06 Score=71.03 Aligned_cols=111 Identities=23% Similarity=0.238 Sum_probs=73.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-----C-Ccc--cCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----G-ATV--GGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-----g-~~~--~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
++.|||+|.+|.+++..|...|. +|+++||+.++++.+.+. . ..+ .++..+.+.++|+||-|+|-...-..
T Consensus 129 ~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~ 208 (284)
T PRK12549 129 RVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHP 208 (284)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCC
Confidence 68999999999999999999997 799999999999888653 1 111 23344566789999999875421100
Q ss_pred HHhccCccc-cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 73 VVFDKGGVL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 73 v~~~~~~l~-~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
- ..+. ..++++.+++|+.-....+ .+.+...++|+..++.
T Consensus 209 ~----~~~~~~~l~~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~G 249 (284)
T PRK12549 209 G----LPLPAELLRPGLWVADIVYFPLET--ELLRAARALGCRTLDG 249 (284)
T ss_pred C----CCCCHHHcCCCcEEEEeeeCCCCC--HHHHHHHHCCCeEecC
Confidence 0 0111 2356777888877553322 2334455667666543
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=68.05 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=63.6
Q ss_pred CeEEEEecChhhHHHHHHHHh-CCCcEE-EEcCCcchhH--HHHHCCCcc-cCCHHHHHh--hCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKCD--ELVAHGATV-GGSPAEVIK--KCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~-~g~~V~-~~~r~~~~~~--~l~~~g~~~-~~~~~~~~~--~~dvvii~vp~~~~~~~v 73 (291)
+||+|||+|.+|..+...+.+ .++++. ++++++++.. ...+.|+.. .++.+++++ +.|+|++|+|...+.+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 589999999999998777764 456755 6788887633 334457664 447777775 578899999998776554
Q ss_pred HhccCccccccCCCcEEEEcCCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. ..+..|+.+++.+..
T Consensus 82 ~-------~al~aGk~VIdekPa 97 (285)
T TIGR03215 82 R-------LLAELGKIVIDLTPA 97 (285)
T ss_pred H-------HHHHcCCEEEECCcc
Confidence 4 234577888876654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.9e-06 Score=70.23 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=59.8
Q ss_pred EEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHH----HHC----C--Ccc--cCCHHHHHhhCCEEEEecCCH--
Q 022834 3 VGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDEL----VAH----G--ATV--GGSPAEVIKKCTITIGMLADP-- 67 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l----~~~----g--~~~--~~~~~~~~~~~dvvii~vp~~-- 67 (291)
|+|||+|.||..++..|+.+|+ +|+++|+++++.+.. .+. + .++ ..+. +.+++||+||+++..+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCCC
Confidence 6899999999999999998876 999999998754321 111 1 122 2344 4578999999987321
Q ss_pred -------------HHHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 68 -------------AAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 68 -------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
..+++++ +++.+.. ++.+++..||..
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~---~~i~~~~-p~~~iIv~sNP~ 118 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVA---ENIKKYA-PNAIVIVVTNPL 118 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecCcH
Confidence 1233444 4555554 556666666543
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.7e-05 Score=59.07 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=68.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-----cCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
+||..||+| .|..++..|++.|++|+..|.+++..+.+.+.+..+ .+...++-+++|+|.-+=|.++-...++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~- 95 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL- 95 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH-
Confidence 479999999 999999999999999999999999988887776543 2333466778999988887766555555
Q ss_pred ccCccccccCCCcEEEEcCCCC
Q 022834 76 DKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
++...+..+-+|-.+|+-.
T Consensus 96 ---~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 96 ---ELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred ---HHHHHcCCCEEEEcCCCCC
Confidence 5666564445555555543
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.5e-06 Score=71.19 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=73.9
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHCC-----CcccCCHHHHHhhCCEEEEecCCHHHHH-HHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHG-----ATVGGSPAEVIKKCTITIGMLADPAAAL-SVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g-----~~~~~~~~~~~~~~dvvii~vp~~~~~~-~v~ 74 (291)
++.|+|+|.+|.+++..|...| .+|++++|+.++++.+.+.. +....+..+.+.++|+||-|+|....-. ...
T Consensus 125 ~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~~~ 204 (278)
T PRK00258 125 RILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGELPLP 204 (278)
T ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCCCCCC
Confidence 6889999999999999999999 78999999999988876542 1121123355678999999997654210 000
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
+-....++++.+++|+.-. |... .+.+...+.|+.+++.
T Consensus 205 ---~~~~~~l~~~~~v~DivY~-P~~T-~ll~~A~~~G~~~~~G 243 (278)
T PRK00258 205 ---PLPLSLLRPGTIVYDMIYG-PLPT-PFLAWAKAQGARTIDG 243 (278)
T ss_pred ---CCCHHHcCCCCEEEEeecC-CCCC-HHHHHHHHCcCeecCC
Confidence 1011345678899998664 3222 2334455667665543
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.3e-06 Score=67.21 Aligned_cols=67 Identities=19% Similarity=0.419 Sum_probs=51.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH--CCCcc---cCCHHHH-----HhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--HGATV---GGSPAEV-----IKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~--~g~~~---~~~~~~~-----~~~~dvvii~vp~~ 67 (291)
|+|.|||+|.+|..++..|.+.||+|+++++++++++.... ....+ ..+..+. +.++|+++.++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 89999999999999999999999999999999999888444 33222 1122233 35689999998553
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=77.86 Aligned_cols=107 Identities=19% Similarity=0.177 Sum_probs=77.7
Q ss_pred eEEEEecChhhHHHHHHHHhCC-Cc-------------EEEEcCCcchhHHHHHC--C---Ccc-cCCHHHHH---hhCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FK-------------VTVWNRTLSKCDELVAH--G---ATV-GGSPAEVI---KKCT 58 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~-------------V~~~~r~~~~~~~l~~~--g---~~~-~~~~~~~~---~~~d 58 (291)
||+|||+|.||...+..|++.. .+ |++.|+++++++.+.+. + +.+ +.+.+++. +++|
T Consensus 571 rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~D 650 (1042)
T PLN02819 571 NVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVD 650 (1042)
T ss_pred cEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCC
Confidence 7999999999999999998753 33 88999999988887663 3 233 45655554 5799
Q ss_pred EEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 59 ITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 59 vvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+|++|+|...+.. +. ...+..++.+++.+ -.......+.+...+.|+.++
T Consensus 651 aVIsalP~~~H~~-VA------kaAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m 700 (1042)
T PLN02819 651 VVISLLPASCHAV-VA------KACIELKKHLVTAS-YVSEEMSALDSKAKEAGITIL 700 (1042)
T ss_pred EEEECCCchhhHH-HH------HHHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEE
Confidence 9999999876643 33 12345667778777 344556677777777787766
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=69.81 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=49.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHC---------CCcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH---------GATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~---------g~~~~~~~~~~~~~~dvvii~vp 65 (291)
+||+|||+|.+|..++..|+..|. ++.++|++.++++...-+ ...+..+..+.+++||+||++..
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 589999999999999999998886 799999988876543321 12333344456789999999864
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0013 Score=57.59 Aligned_cols=261 Identities=16% Similarity=0.200 Sum_probs=155.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-----C--------------------CcccCCHHHHHh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----G--------------------ATVGGSPAEVIK 55 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-----g--------------------~~~~~~~~~~~~ 55 (291)
+|-|+|+|..+.-+|..|.+.+. +|-+++|...+.+.+.+. + -.+..+.+++..
T Consensus 3 ~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~g 82 (429)
T PF10100_consen 3 NVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIEG 82 (429)
T ss_pred ceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhcc
Confidence 68999999999999999998764 689999988887765431 1 123456777777
Q ss_pred hCCEEEEecCCHHHHHHHHhccCcccc-ccCCCcEEEEcCCCCHHHHHHHHHHHHhcC--CcEEEcc-cCCCh-------
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLE-QICPGKGYIDMSTVDHETSIKISRAITSKG--GHFLEAP-VSGSK------- 124 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~-~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~------- 124 (291)
+-|.+|+|||. .+-.+|+ +++.. .+++=+.+|.+|....+. .-+...+.+.+ +.++.-. -+|..
T Consensus 83 ~WdtlILavta-DAY~~VL---~ql~~~~L~~vk~iVLvSPtfGS~-~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~ 157 (429)
T PF10100_consen 83 EWDTLILAVTA-DAYLDVL---QQLPWEVLKRVKSIVLVSPTFGSH-LLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQ 157 (429)
T ss_pred cccEEEEEech-HHHHHHH---HhcCHHHHhhCCEEEEECcccchH-HHHHHHHHhcCCCceEEEeecccccceeccCCC
Confidence 88999999966 5567788 56653 344445666666553332 12333444432 2233211 11110
Q ss_pred H-----hhcccceEEEecC---CHHHHHHHHHHHHHhccceEeeCCCChhHHHHH-------------HHH---------
Q 022834 125 Q-----PAETGQLVILSAG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKL-------------VVN--------- 174 (291)
Q Consensus 125 ~-----~~~~g~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~-------------~~n--------- 174 (291)
. .+-+.+ +++|. +....+++..+++.+|..+..++.+-.|+.... .-|
T Consensus 158 ~~~vlt~~vK~k--iYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~ 235 (429)
T PF10100_consen 158 PNRVLTTAVKKK--IYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVP 235 (429)
T ss_pred cceehhhhhhce--EEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCc
Confidence 0 111122 33333 556688999999999988766665433332111 011
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC-c--ccccc----c--cc-----------
Q 022834 175 --------------MIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA-N--PMFKG----K--GP----------- 220 (291)
Q Consensus 175 --------------~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~-s--~~~~~----~--~~----------- 220 (291)
....-|..++.|.+.+..+.|++.=-+.+++...... . .+.++ + .+
T Consensus 236 kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVR 315 (429)
T PF10100_consen 236 KYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVR 315 (429)
T ss_pred ceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHH
Confidence 2333467889999999999999887788888764211 0 01100 0 00
Q ss_pred ---ccc--------cCCC---C------------CCcccccHHH-H---HHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 221 ---TML--------QSNY---A------------PAFPLKHQQK-D---MRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 221 ---~~~--------~~~~---~------------~~~~~~~~~~-d---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
-++ ++.| + .-..+..|.+ | +..+...|+.+|+++|.++.+.+.++...+
T Consensus 316 YtsiLIDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~ 394 (429)
T PF10100_consen 316 YTSILIDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLS 394 (429)
T ss_pred hhhheeCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 000 0000 0 0001233322 2 577889999999999999999998887654
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.1e-06 Score=66.16 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=63.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-----CCcc----cCCH---HHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATV----GGSP---AEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~----~~~~---~~~~~~~dvvii~vp~~ 67 (291)
+++.|+|. |.+|..++..|++.|++|++++|+.++++.+.+. +..+ ..+. .+.++++|+||.++|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 47899995 9999999999999999999999999888776542 2111 1222 35677899999999765
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCCH
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
..... ......+++.+++|+.-..+
T Consensus 109 ~~~~~------~~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 109 VELLE------KLAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred ceech------hhhcccCceeEEEEccCCCC
Confidence 53111 11222334678898765543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.5e-06 Score=61.05 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=57.1
Q ss_pred eEEEEe-cChhhHHHHHHHHhCC-Cc-EEEEcCCcchhHHHHHC--------CCcccCCHHHHHhhCCEEEEecCCHHHH
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNG-FK-VTVWNRTLSKCDELVAH--------GATVGGSPAEVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g-~~-V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~~~dvvii~vp~~~~~ 70 (291)
||+||| +|.+|..+.+.|.++- ++ +.++.++.+.-+.+... ...+.+...+.+.++|+||+|+|. ...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~-~~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH-GAS 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH-HHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch-hHH
Confidence 799999 9999999999999853 34 44566655232333322 122223233445899999999966 444
Q ss_pred HHHHhccCccccccCCCcEEEEcCCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.+.. +.+ +.++..|||+|..
T Consensus 80 ~~~~---~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 80 KELA---PKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp HHHH---HHH---HHTTSEEEESSST
T ss_pred HHHH---HHH---hhCCcEEEeCCHH
Confidence 5555 333 4578899999876
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00014 Score=59.89 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=84.2
Q ss_pred CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE---EEcc
Q 022834 43 GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF---LEAP 119 (291)
Q Consensus 43 g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~---~~~~ 119 (291)
|+.+++|..|+++++|++|+-+|.......++ +.+.+++++|.+|.+.+|..|...-++.+.+..+.+.+ ..+.
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56778888899999999999999987667777 78889999999999999999887777766665444433 3334
Q ss_pred cCCChHhhcccceEEEec-CCHHHHHHHHHHHHHhccceEeeCC
Q 022834 120 VSGSKQPAETGQLVILSA-GEKALYDEAISALNVIGKKAFFLGE 162 (291)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~ll~~~g~~~~~~~~ 162 (291)
+.|.+ |+..+--+ .++++.+++-++.+..++..+.+..
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA 243 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPA 243 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 44444 44322111 2789999999999999998877643
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.3e-06 Score=73.31 Aligned_cols=66 Identities=30% Similarity=0.473 Sum_probs=55.4
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC-CCc--ccCCHHHHHhhCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g~~--~~~~~~~~~~~~dvvii~vp~~ 67 (291)
|+.|||+|.||...++.|.++| .+|++.+|+.++++.++++ |.. ..+...+.+.++|+||.|+..+
T Consensus 180 ~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 180 KVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence 6899999999999999999999 6799999999999998875 533 3345566778999999998544
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.6e-06 Score=75.84 Aligned_cols=67 Identities=27% Similarity=0.438 Sum_probs=54.0
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC-CCcc--cCCHHHHHhhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATV--GGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g~~~--~~~~~~~~~~~dvvii~vp~~~ 68 (291)
+|+|||+|.||..++..|...| .+|++++|+.++++.+.+. |... ..+..+.+.++|+||.|++.+.
T Consensus 182 ~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 182 KALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred EEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 7999999999999999999999 7899999999888766653 3322 2345567789999999996544
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=69.27 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=47.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHH--H--HH----CC--Ccc--cCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE--L--VA----HG--ATV--GGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~--l--~~----~g--~~~--~~~~~~~~~~~dvvii~v 64 (291)
+||+|||+|.||..++..++..|+ +|.++|+++++++. + .. .+ .++ ..+. +.+++||+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 489999999999999999999995 89999999885431 1 10 11 122 3454 5678999999976
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.9e-06 Score=73.72 Aligned_cols=93 Identities=23% Similarity=0.360 Sum_probs=64.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcc---c---CCHHHHHhhCCEEEEecCCHHH-HHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV---G---GSPAEVIKKCTITIGMLADPAA-ALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~---~---~~~~~~~~~~dvvii~vp~~~~-~~~v 73 (291)
++.|||+|.+|...+..+...|.+|+++|+++++.+.+... +..+ . .+..+.+.++|+||.|++-+.. ...+
T Consensus 169 ~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~l 248 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKL 248 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcC
Confidence 68999999999999999999999999999999888777654 3221 1 1334566789999999732110 1111
Q ss_pred HhccCccccccCCCcEEEEcCCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+ . ++....++++.+|+|++..
T Consensus 249 i-t-~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 249 V-S-NSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred c-C-HHHHhcCCCCCEEEEEecC
Confidence 1 1 2233445688899998754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.6e-06 Score=64.23 Aligned_cols=63 Identities=27% Similarity=0.333 Sum_probs=49.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc-----cc--CCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-----VG--GSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----~~--~~~~~~~~~~dvvii~vp 65 (291)
|||+|||+ |..|+.|.....+.||+|+.+.||+++...+ ++++ +. ++..+.+..-|+||.+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~--~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR--QGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc--ccceeecccccChhhhHhhhcCCceEEEecc
Confidence 99999998 9999999999999999999999999887654 2221 11 233356667899998873
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.4e-05 Score=54.49 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=54.8
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc----CCHHHH----HhhCCEEEEecCCHHHHHHHH
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~~dvvii~vp~~~~~~~v~ 74 (291)
|.|+|+|.+|..++..|.+.+.+|++++++++..+.+.+.|..+. .+.+.+ +++++.++++++++..--.++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 579999999999999999977799999999999999999885542 122221 246899999997765544444
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.4e-06 Score=72.38 Aligned_cols=92 Identities=17% Similarity=0.282 Sum_probs=60.4
Q ss_pred eEEEEecChhhHHHHHHHHh-CC-CcEEEEcCCcchhHHHHHC----C--CcccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
+++|||+|..|...+..+.. .+ .+|.+|+|++++++.+.+. + +..+++.++++++||+|+.|+|.... ..+
T Consensus 130 ~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~-~P~ 208 (313)
T PF02423_consen 130 TLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP-APV 208 (313)
T ss_dssp EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE-EES
T ss_pred eEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC-Ccc
Confidence 68999999999999999876 33 4699999999998887653 3 33577899999999999999965331 133
Q ss_pred HhccCccccccCCCcEEEEcCCCCHH
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHE 99 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~ 99 (291)
+ + ..++++|+.|..++...|.
T Consensus 209 ~---~--~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 209 F---D--AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp B------GGGS-TT-EEEE-S-SSTT
T ss_pred c---c--HHHcCCCcEEEEecCCCCc
Confidence 4 1 2357789998888776664
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.5e-05 Score=71.62 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=71.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC---CHHHH-----HhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG---SPAEV-----IKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~---~~~~~-----~~~~dvvii~vp~~~~~~~v 73 (291)
+|.|+|+|++|..+++.|.+.|++|+++|.|+++++.+.+.|..+.. +..+. ++++|.++++++++.....+
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~i 498 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEI 498 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHHH
Confidence 57899999999999999999999999999999999999887754311 12222 34789999999776554444
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
. ...... .++..++-.. ..+...+ .+.+.|.+++-.|
T Consensus 499 v---~~~~~~-~~~~~iiar~-~~~~~~~----~l~~~Gad~vv~p 535 (558)
T PRK10669 499 V---ASAREK-RPDIEIIARA-HYDDEVA----YITERGANQVVMG 535 (558)
T ss_pred H---HHHHHH-CCCCeEEEEE-CCHHHHH----HHHHcCCCEEECh
Confidence 4 222222 2333334332 2343333 2345577666554
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=70.83 Aligned_cols=113 Identities=28% Similarity=0.363 Sum_probs=73.6
Q ss_pred EEEEecChhhHHHHHHHHhCC-C-cEEEEcCCcchhHHHHHC--CCcc------cC---CHHHHHhhCCEEEEecCCHHH
Q 022834 3 VGFLGLGIMGKAISMNLLRNG-F-KVTVWNRTLSKCDELVAH--GATV------GG---SPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g-~-~V~~~~r~~~~~~~l~~~--g~~~------~~---~~~~~~~~~dvvii~vp~~~~ 69 (291)
|.|+|+|.+|..++..|++.+ + +|++.+|+.++++.+.+. +..+ .. ++.++++++|+||-|+|.. .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 789999999999999999876 4 899999999999888753 2111 12 2456778999999999664 4
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGS 123 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 123 (291)
-..++ + ..+..+...||.|. ......++.+...+.|..++ ++...-+
T Consensus 80 ~~~v~---~---~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PG 127 (386)
T PF03435_consen 80 GEPVA---R---ACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPG 127 (386)
T ss_dssp HHHHH---H---HHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred hHHHH---H---HHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence 44555 2 22446778888433 24455666666667777766 4444433
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.4e-06 Score=71.94 Aligned_cols=93 Identities=14% Similarity=0.192 Sum_probs=68.7
Q ss_pred eEEEEecChhhHHHHHHHHhC-C-CcEEEEcCCcchhHHHHHC----C--CcccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
+++|||+|..+......+..- . .+|++|+|++++.+.+.+. + +..+++.+++++++|+|+.|+|... -..+
T Consensus 131 ~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~Pv 209 (346)
T PRK07589 131 TMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NATI 209 (346)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CCce
Confidence 589999999999998877652 2 4799999999998876642 3 3456899999999999999996422 1233
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHH
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHET 100 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~ 100 (291)
+ + ..++++|+.|..+.+..|..
T Consensus 210 l---~--~~~lkpG~hV~aIGs~~p~~ 231 (346)
T PRK07589 210 L---T--DDMVEPGMHINAVGGDCPGK 231 (346)
T ss_pred e---c--HHHcCCCcEEEecCCCCCCc
Confidence 4 1 23567898888777666644
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.4e-06 Score=73.83 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=55.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-C-Ccc--cCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G-ATV--GGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g-~~~--~~~~~~~~~~~dvvii~vp~~~ 68 (291)
.||.|||+|.||..++..|...|. ++++++|+.++++.+.+. + ... .++..+.+.++|+||.|++.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence 379999999999999999999995 699999999999888875 3 222 2344566788999999996654
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.1e-05 Score=71.70 Aligned_cols=108 Identities=18% Similarity=0.254 Sum_probs=73.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC---CHHHH-----HhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG---SPAEV-----IKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~---~~~~~-----~~~~dvvii~vp~~~~~~~ 72 (291)
++|.|+|+|++|..+++.|.+.|+++++.|.|+++++.+.+.|..+.. +..+. ++++|.++++++++.....
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~ 480 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMK 480 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHH
Confidence 368899999999999999999999999999999999999887755421 22222 3478999999988766656
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
++ ....... ++..|+-.+. .+... +.+.+.|...+-
T Consensus 481 i~---~~~r~~~-p~~~IiaRa~-~~~~~----~~L~~~Ga~~vv 516 (601)
T PRK03659 481 IV---ELCQQHF-PHLHILARAR-GRVEA----HELLQAGVTQFS 516 (601)
T ss_pred HH---HHHHHHC-CCCeEEEEeC-CHHHH----HHHHhCCCCEEE
Confidence 65 2333333 4444443333 33333 334455665543
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00031 Score=58.11 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=83.6
Q ss_pred CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE---Ecc
Q 022834 43 GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL---EAP 119 (291)
Q Consensus 43 g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~---~~~ 119 (291)
|+.+++|..|+++++|++|+-+|.......++ +++.+++++|.+|.+.+|..|..+-++.+.+..+.+.+. .+.
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa 202 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPGC 202 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCCC
Confidence 56778888899999999999999887667777 788899999999999999998877777666654444333 333
Q ss_pred cCCChHhhcccceEEEec-CCHHHHHHHHHHHHHhccceEeeCC
Q 022834 120 VSGSKQPAETGQLVILSA-GEKALYDEAISALNVIGKKAFFLGE 162 (291)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~ll~~~g~~~~~~~~ 162 (291)
+.|.+ ++..+.-+ .++++.+++-++.+..++..+.+..
T Consensus 203 VPgt~-----~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~PA 241 (340)
T TIGR01723 203 VPEMK-----GQVYIAEGYASEEAVNKLYELGKKARGKAFKMPA 241 (340)
T ss_pred CCCCC-----CceEeecccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 43433 23222222 2889999999999999998877543
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.1e-05 Score=69.12 Aligned_cols=89 Identities=17% Similarity=0.247 Sum_probs=58.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHC-----C---Cccc-CCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-----G---ATVG-GSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-----g---~~~~-~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+|+|+ |.+|..+.+.|.++ ++++. ++++....-+.+.+. + ..+. .+.+++.+++|++|+|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 79999998 99999999999976 56777 555443222222211 1 1111 144555568999999998865
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+ .++. ..+ ...|..|||+|+.
T Consensus 81 s-~~~~---~~~---~~~G~~VIDlS~~ 101 (346)
T TIGR01850 81 S-AELA---PEL---LAAGVKVIDLSAD 101 (346)
T ss_pred H-HHHH---HHH---HhCCCEEEeCChh
Confidence 4 4444 233 3467899999976
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0036 Score=53.16 Aligned_cols=259 Identities=17% Similarity=0.202 Sum_probs=151.2
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC--------------------C----CcccCCHHHHHhh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH--------------------G----ATVGGSPAEVIKK 56 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~--------------------g----~~~~~~~~~~~~~ 56 (291)
++-++|+|.+..-+|..|..+| .++-+++|-.-+.+++.+. | -....+++++..+
T Consensus 6 ~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~~~d 85 (431)
T COG4408 6 PVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQAVGD 85 (431)
T ss_pred ceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHhhch
Confidence 6889999999999999999887 5788888866666655441 1 0224567777777
Q ss_pred CCEEEEecCCHHHHHHHHhccCccc-cccCCCcEEEEcCC--CCHHHHHHHHHHHHhcCCc------------EEEcccC
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVL-EQICPGKGYIDMST--VDHETSIKISRAITSKGGH------------FLEAPVS 121 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~-~~l~~~~~vv~~s~--~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 121 (291)
-+.+|+|||. .+-.+++ +++. ..++.-+.+|.+|. ++....+.....+. ..+. +++..-.
T Consensus 86 wqtlilav~a-DaY~dvl---qqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~-~daeViS~SsY~~dTk~id~~~p 160 (431)
T COG4408 86 WQTLILAVPA-DAYYDVL---QQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAG-RDAEVISLSSYYADTKYIDAEQP 160 (431)
T ss_pred hheEEEEeec-HHHHHHH---hcCCHhHhccccEEEEecccccccHHHHHHHhhhC-CCceEEEeehhcccceeecccCc
Confidence 8999999976 5667788 5553 23444445554444 33334444443332 2222 2321100
Q ss_pred CChHh---hcccceEEEecC---CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHH-----------------------
Q 022834 122 GSKQP---AETGQLVILSAG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLV----------------------- 172 (291)
Q Consensus 122 ~~~~~---~~~g~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~----------------------- 172 (291)
+.. +-+.+ ++.|. +....+.+..+++..|..+..+..+-.|+.....
T Consensus 161 --~~alTkavKkr--iYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~ 236 (431)
T COG4408 161 --NRALTKAVKKR--IYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQR 236 (431)
T ss_pred --chHHHHHHhHh--eeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCC
Confidence 111 11112 34443 5566778999999999887666664444322111
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC--ccccccc-------ccc---------
Q 022834 173 -------------VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA--NPMFKGK-------GPT--------- 221 (291)
Q Consensus 173 -------------~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~--s~~~~~~-------~~~--------- 221 (291)
...+..-+..++.|.+++..+.|+..=.+..+++..... ..++.+. .+.
T Consensus 237 p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlLfV 316 (431)
T COG4408 237 PQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLLFV 316 (431)
T ss_pred CceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHHHH
Confidence 012333356788899999999999877777777754211 1111110 000
Q ss_pred ----cccCCCC-C---C----c----------------ccccH-HHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 222 ----MLQSNYA-P---A----F----------------PLKHQ-QKD---MRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 222 ----~~~~~~~-~---~----~----------------~~~~~-~~d---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
++-.-|+ | | | .+..| ..| +..+...|...++.+|..+.+...++.+..
T Consensus 317 RYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~lt~ye~a~k 396 (431)
T COG4408 317 RYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLLTRYEQALK 396 (431)
T ss_pred HHHHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 0000011 0 0 0 11112 223 466788999999999999999998888765
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.3e-05 Score=68.84 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=57.0
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEEE-EcCCcchhHHHHHC-----CC--cccCCHHH-HHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTV-WNRTLSKCDELVAH-----GA--TVGGSPAE-VIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~~-~~r~~~~~~~l~~~-----g~--~~~~~~~~-~~~~~dvvii~vp~~~~ 69 (291)
|||+|||+ |.+|..+++.|.++ ++++.. .++ .+..+.+.+. +. ....+.++ ...++|+||+|+|...+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH
Confidence 58999997 99999999999876 567654 454 2332233221 11 01222222 44679999999988665
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
.+-+. .+ +..|..|||+|+..
T Consensus 82 ~~~v~----~a---~~aG~~VID~S~~f 102 (343)
T PRK00436 82 MDLAP----QL---LEAGVKVIDLSADF 102 (343)
T ss_pred HHHHH----HH---HhCCCEEEECCccc
Confidence 44333 22 34688999999763
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.3e-05 Score=65.83 Aligned_cols=109 Identities=13% Similarity=0.138 Sum_probs=69.9
Q ss_pred CeEEEEecChhhH-HHHHHHHh--CCCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHh--hCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGK-AISMNLLR--NGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~--~g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v 73 (291)
+||||||+|.++. .....+.. .++++. ++|+++++.+..... +...+++.+++++ +.|+|++|+|...+.+-+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~ 81 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 81 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence 4899999999775 34554533 356765 679987654323233 3667789999985 579999999998887766
Q ss_pred HhccCccccccCCCcEE-EEc-CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 74 VFDKGGVLEQICPGKGY-IDM-STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~v-v~~-s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
. . .+..|+.| +.- -.......+++.+...+.++.+.
T Consensus 82 ~---~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 82 K---R----ALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred H---H----HHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 5 2 23344443 331 12244566777776666665543
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.8e-05 Score=72.33 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=54.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-CCCccc----CC---HHHH-HhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVG----GS---PAEV-IKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~~----~~---~~~~-~~~~dvvii~vp~~~ 68 (291)
|+|.|+|+|.+|..++..|.+.|++|+++++++++.+.+.+ .+..+. .+ ..++ ++++|.+++++++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 89999999999999999999999999999999999988876 443321 12 2233 467999999997644
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=71.24 Aligned_cols=86 Identities=24% Similarity=0.299 Sum_probs=63.8
Q ss_pred eEEEEecChhhHHHHHHHHhC--C-CcEEEEcCCcchhHHHHHC------C---CcccCCHHHHHhhCCEEEEecCCHH-
Q 022834 2 EVGFLGLGIMGKAISMNLLRN--G-FKVTVWNRTLSKCDELVAH------G---ATVGGSPAEVIKKCTITIGMLADPA- 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~--g-~~V~~~~r~~~~~~~l~~~------g---~~~~~~~~~~~~~~dvvii~vp~~~- 68 (291)
+++|||+|.++......+..- . .+|.+|+|++++++.+.+. + +.++++.++++++||+|+.|++...
T Consensus 157 ~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~~~ 236 (379)
T PRK06199 157 VVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGETG 236 (379)
T ss_pred EEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCCCC
Confidence 689999999999999998862 2 3799999999998876542 2 4457899999999999999996432
Q ss_pred --HHHHHHhccCccccccCCCcEEEE
Q 022834 69 --AALSVVFDKGGVLEQICPGKGYID 92 (291)
Q Consensus 69 --~~~~v~~~~~~l~~~l~~~~~vv~ 92 (291)
....++ + ..++++|+.|..
T Consensus 237 ~~s~~Pv~---~--~~~lkpG~hv~~ 257 (379)
T PRK06199 237 DPSTYPYV---K--REWVKPGAFLLM 257 (379)
T ss_pred CCCcCcEe---c--HHHcCCCcEEec
Confidence 112333 1 235678887764
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.9e-05 Score=66.40 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=60.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHC-----------CCcccCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH-----------GATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~-----------g~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
+||+|||+|.+|..++..|+..|. ++.++|+++++++....+ .+....+.++ +++||+||++...+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 699999999999999999998774 699999988766433211 1122245554 78999999976321
Q ss_pred H---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 A---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. -++++. +.+.+. .++.+++..||-
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~---~~i~~~-~p~~~vivvsNP 122 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGII---PKLVKY-SPNAILLVVSNP 122 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCcEEEEccCh
Confidence 1 133343 444444 366777776654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.4e-05 Score=63.20 Aligned_cols=111 Identities=18% Similarity=0.251 Sum_probs=82.0
Q ss_pred eEEEEecChhhHHHHHHHHh---CCCcEE-EEcCCcchhHHHHHC-C---CcccCCHHHHHhhC--CEEEEecCCHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR---NGFKVT-VWNRTLSKCDELVAH-G---ATVGGSPAEVIKKC--TITIGMLADPAAAL 71 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~---~g~~V~-~~~r~~~~~~~l~~~-g---~~~~~~~~~~~~~~--dvvii~vp~~~~~~ 71 (291)
|+||+|+|.|+.-+++.|.- .+|.|+ +++|+.+++..+++. + .+...+.++++++. |+|.+.+|.+++.+
T Consensus 8 r~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~e 87 (351)
T KOG2741|consen 8 RWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHYE 87 (351)
T ss_pred EEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHHH
Confidence 79999999999999999864 468766 669999999888765 3 46788999999865 99999999998876
Q ss_pred HHHhccCccccccCCCc-EEEEc-CCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 72 SVVFDKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~-~vv~~-s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
-+. ..+..++ +++.- -......++++.+....+|+.+.+.-
T Consensus 88 vv~-------l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~ 130 (351)
T KOG2741|consen 88 VVM-------LALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGL 130 (351)
T ss_pred HHH-------HHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeee
Confidence 655 1222333 44431 12345677888888888888776643
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.3e-05 Score=69.86 Aligned_cols=115 Identities=24% Similarity=0.362 Sum_probs=71.6
Q ss_pred CeEEEEecChhhHHHHHHHHhC--------C--Cc-EEEEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--------G--FK-VTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--------g--~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~ 67 (291)
+||+|+|+|.||..++..|.++ | .+ +.++++++++...+...+..++++.++++. +.|+|+.|++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 3799999999999999888653 3 34 346688876644322224456778888885 469999998653
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEE-EcccC
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFL-EAPVS 121 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 121 (291)
....+.+ ...+..|+.|+..... .....+++.+...+.++.+. .+.+.
T Consensus 84 ~~~~~~~------~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ 133 (426)
T PRK06349 84 EPARELI------LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVA 133 (426)
T ss_pred hHHHHHH------HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEee
Confidence 3222222 3445677887743221 12344556666666777665 44333
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.5e-05 Score=64.45 Aligned_cols=89 Identities=13% Similarity=0.186 Sum_probs=63.5
Q ss_pred CeEEEEecChhhHHHHHHHHh-CCCcEE-EEcCCcchh--HHHHHCCCcc-cCCHHHHHh-----hCCEEEEecCCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKC--DELVAHGATV-GGSPAEVIK-----KCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~-~g~~V~-~~~r~~~~~--~~l~~~g~~~-~~~~~~~~~-----~~dvvii~vp~~~~~ 70 (291)
+||+|||+|.+|..+...+.+ .+.++. ++++++++. +...+.|+.. .++.+++++ +.|+||+++|...+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~ 84 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHV 84 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHH
Confidence 489999999999998888775 356655 678887643 3334457765 467888874 478899999876654
Q ss_pred HHHHhccCccccccCCCcEEEEcCCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+... .....|+.++|.+..
T Consensus 85 e~a~-------~a~eaGk~VID~sPA 103 (302)
T PRK08300 85 RHAA-------KLREAGIRAIDLTPA 103 (302)
T ss_pred HHHH-------HHHHcCCeEEECCcc
Confidence 4333 234578888988765
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00023 Score=68.24 Aligned_cols=122 Identities=10% Similarity=0.079 Sum_probs=95.1
Q ss_pred EEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhh--------ccc
Q 022834 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPA--------ETG 130 (291)
Q Consensus 60 vii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~g 130 (291)
||+|+|- ..+.+++ +++.+.++++++|.|.++......+.+.+.+......|+ .+|+.|....- ..+
T Consensus 1 vila~Pv-~~~~~~~---~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAPV-AQTGPLL---ARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVG 76 (673)
T ss_pred CEEEcCH-HHHHHHH---HHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCC
Confidence 6899955 6788888 788888989999999999988777777766544335688 88998886543 356
Q ss_pred ceEEEecC---CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHH
Q 022834 131 QLVILSAG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFS 185 (291)
Q Consensus 131 ~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~ 185 (291)
...+++.. +.+.++.+.+++..+|.+++.+++..+...+-++..+......++..
T Consensus 77 ~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~ 134 (673)
T PRK11861 77 RNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVE 134 (673)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66667643 57788999999999999999998888888888888876555555543
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.7e-05 Score=65.02 Aligned_cols=72 Identities=18% Similarity=0.295 Sum_probs=58.3
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||.|. +|..++..|.+.|.+|+++++.. .++.+.+++||+||.+++.+.-+..
T Consensus 160 ~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~-------- 217 (286)
T PRK14175 160 NAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTK-------- 217 (286)
T ss_pred EEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCH--------
Confidence 799999999 99999999999999999998642 3567788999999999988542221
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++.+|||.+..
T Consensus 218 -~~vk~gavVIDvGi~ 232 (286)
T PRK14175 218 -DVVKEGAVIIDVGNT 232 (286)
T ss_pred -HHcCCCcEEEEcCCC
Confidence 246788999998764
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=59.33 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=48.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc-chhHHHHHCC-CcccCC-H-HHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHG-ATVGGS-P-AEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l~~~g-~~~~~~-~-~~~~~~~dvvii~vp~~~ 68 (291)
.+|.|||.|.+|...+..|.+.|++|++++++. +.+..+.+.+ +..... . .+.+.++|+||.|+.++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 379999999999999999999999999998754 2334454443 222111 1 234568999999996654
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.2e-05 Score=66.23 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=46.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCc--EEEEcCCc--chhHHHH----H----CC--Ccc--cCCHHHHHhhCCEEEEe
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFK--VTVWNRTL--SKCDELV----A----HG--ATV--GGSPAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~--V~~~~r~~--~~~~~l~----~----~g--~~~--~~~~~~~~~~~dvvii~ 63 (291)
|||+|+|+ |.+|..++..|+..|+. |+++|+++ ++++... + .+ ..+ ..+. +.++++|+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 89999998 99999999999999864 99999954 4432211 1 12 122 2344 458899999999
Q ss_pred cC
Q 022834 64 LA 65 (291)
Q Consensus 64 vp 65 (291)
+.
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 85
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=60.69 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=65.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC---cEEEEcCC----cchh-------HHHHHC-CC-cccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRT----LSKC-------DELVAH-GA-TVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~---~V~~~~r~----~~~~-------~~l~~~-g~-~~~~~~~~~~~~~dvvii~v 64 (291)
+||.|+|+|.+|..++..|.+.|. +++++||+ .++. +.+.+. +. ....+..+.++++|++|-++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT 105 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVS 105 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCC
Confidence 479999999999999999999996 59999998 4443 223222 11 11135667778899999999
Q ss_pred CCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 65 ADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 65 p~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
|.....++.+ +.+.++.+|+++++-.+ +.+.+...+.+..
T Consensus 106 ~~G~~~~~~l-------~~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 106 RPGVVKKEMI-------KKMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred CCCCCCHHHH-------HhhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 6322122333 22336678888884433 2333334444554
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.6e-05 Score=65.83 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=58.1
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEEE-EcCCcchhHHHHH-------------------CCCcccCCHHHHHhhCCE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVTV-WNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI 59 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~~-~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~~dv 59 (291)
|||+|+|+|+||..+++.+.+. ++++.. .+++++....+.. .++.+..+.+++..++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 5999999999999999998864 567664 4666544443322 133445567777778999
Q ss_pred EEEecCCHHHHHHHHhccCccccccCCCcEEEEcCC
Q 022834 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 60 vii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
||.|+|...+ .+.. + .+++.|+.+|+.+.
T Consensus 82 VIdaT~~~~~-~e~a---~---~~~~aGk~VI~~~~ 110 (341)
T PRK04207 82 VVDATPGGVG-AKNK---E---LYEKAGVKAIFQGG 110 (341)
T ss_pred EEECCCchhh-HHHH---H---HHHHCCCEEEEcCC
Confidence 9999977544 3333 1 23445666666544
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.6e-05 Score=56.51 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=69.4
Q ss_pred CeEEEEe----cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLG----LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG----~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
.+|+||| .+.+|..+...|.++|++|+.++...+.. .|...+.++.|.-...|++++++ .+..+.+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~-~~~~~~~~v-- 72 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCV-PPDKVPEIV-- 72 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S--HHHHHHHH--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEc-CHHHHHHHH--
Confidence 3799999 68999999999999999999998765443 27788889988447899999999 457777787
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
+++... .-+.+++..+ ...+++.+...+.|+.++..
T Consensus 73 -~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 73 -DEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -HHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEES
T ss_pred -HHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeC
Confidence 555443 3445656444 23355666666778777643
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.2e-05 Score=64.21 Aligned_cols=91 Identities=14% Similarity=0.216 Sum_probs=63.1
Q ss_pred EEEEec-ChhhHHHHHHHHhCC----CcEEEEcCCcchhHHHHHC-----------CCcccCCHHHHHhhCCEEEEecCC
Q 022834 3 VGFLGL-GIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVAH-----------GATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 3 I~iIG~-G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~l~~~-----------g~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|+|||+ |.||..++..|+..| .++.++|+++++++....+ .+...++..+.+++||+||++...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999999988 6899999998776543321 122345557888999999996522
Q ss_pred H---------------HHHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 67 P---------------AAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 67 ~---------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
+ ..++++. +++.+.. ++..++..|+-.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~---~~i~~~~-p~a~~i~~tNP~ 122 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIG---DNIEKYS-PDAWIIVVSNPV 122 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecCcH
Confidence 1 1234444 4455444 667777766543
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.3e-05 Score=64.49 Aligned_cols=89 Identities=18% Similarity=0.245 Sum_probs=61.8
Q ss_pred EEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHHC---------CCcc--cCCHHHHHhhCCEEEEecCCHH-
Q 022834 3 VGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH---------GATV--GGSPAEVIKKCTITIGMLADPA- 68 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~---------g~~~--~~~~~~~~~~~dvvii~vp~~~- 68 (291)
|+|||+|.+|..++..|+..| ++++++|+++++++....+ ...+ ..+ .+.+++||+||++...+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 689999999999999999988 6899999998877655432 1122 233 457789999999986432
Q ss_pred --------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 --------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 --------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
-++++. +.+.+.- ++..++..|+-
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~---~~i~~~~-p~~~viv~sNP 117 (300)
T cd00300 80 PGETRLDLINRNAPILRSVI---TNLKKYG-PDAIILVVSNP 117 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHH---HHHHHhC-CCeEEEEccCh
Confidence 133444 4444444 66667766653
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00015 Score=68.76 Aligned_cols=109 Identities=24% Similarity=0.307 Sum_probs=72.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC---CHHHHH-----hhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG---SPAEVI-----KKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~---~~~~~~-----~~~dvvii~vp~~~~~~~v 73 (291)
+|-|+|+|++|..+++.|.+.|+++++.|.|+++++.+++.|..+.. +..+.+ +++|.+++++++++....+
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i 481 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQL 481 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHH
Confidence 68899999999999999999999999999999999999888765421 222223 4789999999776655555
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
+ ....... ++..++-.+ ..+.. ...+.+.|+..+..+
T Consensus 482 ~---~~ar~~~-p~~~iiaRa-~d~~~----~~~L~~~Gad~v~~e 518 (621)
T PRK03562 482 V---ELVKEHF-PHLQIIARA-RDVDH----YIRLRQAGVEKPERE 518 (621)
T ss_pred H---HHHHHhC-CCCeEEEEE-CCHHH----HHHHHHCCCCEEehh
Confidence 5 2223323 333333222 22333 233445677666443
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.4e-05 Score=52.05 Aligned_cols=62 Identities=29% Similarity=0.356 Sum_probs=46.9
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.+++|+|+|.+|..++..|.+. +.+|.+||| |++|.|++.+..+.+-
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~~------ 71 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLEE------ 71 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchHH------
Confidence 3799999999999999999998 578999998 9999999665433321
Q ss_pred cccccCCCcEEEEcC
Q 022834 80 VLEQICPGKGYIDMS 94 (291)
Q Consensus 80 l~~~l~~~~~vv~~s 94 (291)
....+.++.+|++++
T Consensus 72 ~~~~~~~~~~v~~~a 86 (86)
T cd05191 72 ATAKINEGAVVIDLA 86 (86)
T ss_pred HHHhcCCCCEEEecC
Confidence 012345678888753
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0001 Score=62.63 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=80.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
++||+|+|++|+..+.++..-|-.|+.||.-. ..+...+.|++.. +.+|++..||+|-+-+|-..+.+.++. ++..
T Consensus 148 TLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~-~~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin--~~tf 223 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKAMGMHVIGYDPIT-PMALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLN--DETF 223 (406)
T ss_pred EEEEeecccchHHHHHHHHhcCceEEeecCCC-chHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccC--HHHH
Confidence 68999999999999999998888888887532 2234556688876 788999999999999987777777773 2334
Q ss_pred cccCCCcEEEEcCCCCHHHHHHHHHHHH
Q 022834 82 EQICPGKGYIDMSTVDHETSIKISRAIT 109 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~ 109 (291)
...++|--||+++-+...+...+-+.+.
T Consensus 224 A~mKkGVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 224 AKMKKGVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred HHhhCCcEEEEecCCceechHHHHHHHh
Confidence 4567899999999887666555655443
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.6e-05 Score=54.36 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=63.7
Q ss_pred ecChhhHHHHHHHHhC----CCcEE-EEcCC--cchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHhcc
Q 022834 7 GLGIMGKAISMNLLRN----GFKVT-VWNRT--LSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 7 G~G~mG~~la~~l~~~----g~~V~-~~~r~--~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|+|.||..++..|.+. +++|. +++|+ ..........+.....+.++++. +.|+||-|++. ..+.+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~~~~--- 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVAEYY--- 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHHHHH---
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHHHHH---
Confidence 8999999999999986 45654 56887 11112222235567788999887 89999999754 5555555
Q ss_pred CccccccCCCcEEEEcCCCCH---HHHHHHHHHHHhcCCcE
Q 022834 78 GGVLEQICPGKGYIDMSTVDH---ETSIKISRAITSKGGHF 115 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~---~~~~~~~~~~~~~~~~~ 115 (291)
.+.+++|..||..+...- ...+++.+...+.+..+
T Consensus 77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 77 ---EKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 345668888887765532 35566666666666554
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00036 Score=53.28 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=68.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.-....+..+ |...+....+.++ +.++-+...+....-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 68999999999999999999997 699998764433333322 2222222222222 234444444321111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
.. ....+.+-++|++++.. ......+.+...+.++.|+++...|
T Consensus 81 ~~-------~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 81 DN-------LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hh-------HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 10 11223456788887666 5556677778888888898877554
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=61.99 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=58.3
Q ss_pred eEEEEecChh-hHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~m-G~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++|||.|.+ |..++..|.+.|..|+++... +.++.+.++++|+||.++|++.- + .
T Consensus 160 ~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~----i---~-- 216 (285)
T PRK14189 160 HAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNV----L---T-- 216 (285)
T ss_pred EEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCc----c---C--
Confidence 7899999998 999999999999999987643 23677888999999999987542 2 1
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..+++++.+|||.+..
T Consensus 217 ~~~ik~gavVIDVGin 232 (285)
T PRK14189 217 ADMVKPGATVIDVGMN 232 (285)
T ss_pred HHHcCCCCEEEEcccc
Confidence 1457799999998765
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00013 Score=56.49 Aligned_cols=74 Identities=24% Similarity=0.355 Sum_probs=52.3
Q ss_pred CeEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
+++.|||-+. +|..++..|.++|..|++.+... .+.++.++++|+||.+++.+..++
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i~-------- 94 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNLIK-------- 94 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-B---------
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccccc--------
Confidence 3789999985 99999999999999999987642 367778899999999998754322
Q ss_pred cccccCCCcEEEEcCCCC
Q 022834 80 VLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~ 97 (291)
..+++++.+|||++...
T Consensus 95 -~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 95 -ADWIKPGAVVIDVGINY 111 (160)
T ss_dssp -GGGS-TTEEEEE--CEE
T ss_pred -cccccCCcEEEecCCcc
Confidence 23467999999987663
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00018 Score=63.10 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=47.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHC---------CCccc--CCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH---------GATVG--GSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~---------g~~~~--~~~~~~~~~~dvvii~vp 65 (291)
+||+|||+|.+|..++..|...+. ++.++|+++++++...-+ ...+. .+. +.+++||+||++..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCC
Confidence 389999999999999999998775 699999988766533211 12332 234 44789999999863
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00014 Score=63.84 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=68.2
Q ss_pred CeEEEEecChhhHHHHHHHHhC----------CCcEE-EEcCC----------cchhHHHHHC-CC-c------ccCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN----------GFKVT-VWNRT----------LSKCDELVAH-GA-T------VGGSPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~----------g~~V~-~~~r~----------~~~~~~l~~~-g~-~------~~~~~~ 51 (291)
+||+|+|+|.||..++..|.+. +.+|. ++|++ .+++..+.+. +. . ...+..
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4899999999999999999765 34544 55653 2233333322 21 1 123777
Q ss_pred HHHh--hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEE-EcccC
Q 022834 52 EVIK--KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFL-EAPVS 121 (291)
Q Consensus 52 ~~~~--~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 121 (291)
+++. +.|+|+.|+|+..+..+... +-+...+..|..||..+.. .....+++.+...+.+..+. .+.+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~--~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~ 154 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPAL--SHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVG 154 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHH--HHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeee
Confidence 7774 57999999986443211110 1123445677777743322 12234566666666677665 34333
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.9e-05 Score=59.93 Aligned_cols=31 Identities=32% Similarity=0.572 Sum_probs=29.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT 32 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~ 32 (291)
||+|+|+|.||+.++..|++.|. +++++|++
T Consensus 23 ~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 23 TVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 79999999999999999999998 69999988
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0003 Score=54.57 Aligned_cols=65 Identities=22% Similarity=0.159 Sum_probs=46.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC-CcccC-CH-HHHHhhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-ATVGG-SP-AEVIKKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-~~~~~-~~-~~~~~~~dvvii~vp~~~ 68 (291)
+|.|||.|.+|...++.|.+.|++|++++ ++..+.+.+.+ +.+.. .. ++-++++|+||.++.++.
T Consensus 15 ~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e 82 (157)
T PRK06719 15 VVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA 82 (157)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH
Confidence 79999999999999999999999999996 44445554432 22211 11 123568899999995543
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.8e-05 Score=58.96 Aligned_cols=95 Identities=21% Similarity=0.168 Sum_probs=62.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc----------------------C----CHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----------------------G----SPAEVI 54 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----------------------~----~~~~~~ 54 (291)
.||.|+|+|.+|..-+..+...|++|+++|.++++.+.+...+.... . ...+.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i 100 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFI 100 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHH
Confidence 37999999999999999999999999999999888877766543211 1 123455
Q ss_pred hhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 55 ~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
..+|+||.+.--...-...++. ++..+.++++.+|+|+|.-
T Consensus 101 ~~~d~vI~~~~~~~~~~P~lvt-~~~~~~m~~gsvIvDis~D 141 (168)
T PF01262_consen 101 APADIVIGNGLYWGKRAPRLVT-EEMVKSMKPGSVIVDISCD 141 (168)
T ss_dssp HH-SEEEEHHHBTTSS---SBE-HHHHHTSSTTEEEEETTGG
T ss_pred hhCcEEeeecccCCCCCCEEEE-hHHhhccCCCceEEEEEec
Confidence 6799999765111111111111 2334456699999999864
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=62.76 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=46.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHh---CCCcEEEEcCCcchh---HHHHHCC--Ccc----cCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLR---NGFKVTVWNRTLSKC---DELVAHG--ATV----GGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~---~g~~V~~~~r~~~~~---~~l~~~g--~~~----~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+ |.+|.+++..|.. .++++.++++++... -.+.+.+ ..+ .+++.+.++++|+||+|...
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 89999999 9999999998854 246899999875431 1222212 122 23556777899999999843
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0001 Score=58.61 Aligned_cols=62 Identities=27% Similarity=0.402 Sum_probs=49.5
Q ss_pred EEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc----cC---CHHHHHhhCCEEEEecCC
Q 022834 3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GG---SPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 3 I~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~----~~---~~~~~~~~~dvvii~vp~ 66 (291)
|.|+|+ |.+|..++..|.+.||+|++..|++++.+. ..++++ .. +..++++++|.||.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 689996 999999999999999999999999998876 334322 12 334567789999999963
|
... |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00015 Score=63.03 Aligned_cols=92 Identities=11% Similarity=0.116 Sum_probs=60.5
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCCc--chhHHHH----HC------CCcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKCDELV----AH------GATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~~--~~~~~l~----~~------g~~~~~~~~~~~~~~dvv 60 (291)
+||+|||+ |.+|..++..|...|. ++.++|+++ ++++... +. +..+..+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999998774 799999964 3333221 11 123334556778899999
Q ss_pred EEecCCHH---------------HHHHHHhccCccccccCCCcEEEEcCC
Q 022834 61 IGMLADPA---------------AALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 61 ii~vp~~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
|++...+. .++++. +++.+.-+++.+++..||
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~---~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQG---KALNKVAKKDVKVLVVGN 130 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHH---HHHHhhCCCCeEEEEeCC
Confidence 99863321 244444 455555433667666664
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.67 E-value=8.6e-05 Score=63.45 Aligned_cols=67 Identities=22% Similarity=0.215 Sum_probs=51.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCC-----CcccCC---HHHHHhhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHG-----ATVGGS---PAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g-----~~~~~~---~~~~~~~~dvvii~vp~~~ 68 (291)
++.|||+|.+|.+++..|.+.|. +|++++|+.++++.+.+.- +..... ..+.+.++|+||-|+|-..
T Consensus 127 ~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 127 RGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred eEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 68899999999999999999996 6999999999999887641 111221 2234467899999987543
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00025 Score=59.98 Aligned_cols=72 Identities=24% Similarity=0.311 Sum_probs=59.1
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-|. +|..++..|.+.|..|+++++. +.++.+.++++|+||.+++++.-+.
T Consensus 161 ~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~--------- 217 (285)
T PRK10792 161 NAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIP--------- 217 (285)
T ss_pred EEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCccccc---------
Confidence 789999999 9999999999999999999764 2367788899999999997765332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..+++++.+|||.+..
T Consensus 218 ~~~vk~gavVIDvGin 233 (285)
T PRK10792 218 GEWIKPGAIVIDVGIN 233 (285)
T ss_pred HHHcCCCcEEEEcccc
Confidence 2456799999998754
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00011 Score=63.87 Aligned_cols=92 Identities=10% Similarity=0.112 Sum_probs=59.5
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCCcch--hHH----HHHC------CCcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--CDE----LVAH------GATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~~--~~~----l~~~------g~~~~~~~~~~~~~~dvv 60 (291)
+||+|||+ |.+|..++..|...|. ++.++|++++. ++. +.+. .+.+..+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999999998775 79999985432 321 1110 123444556778899999
Q ss_pred EEecCCHH---------------HHHHHHhccCccccccCCCcEEEEcCC
Q 022834 61 IGMLADPA---------------AALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 61 ii~vp~~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
|++-..+. -++++. +++.++-.++.+++..||
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~---~~i~~~~~~~~iiivvsN 129 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQG---KALNDVASRDVKVLVVGN 129 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHH---HHHHhhCCCCeEEEEecC
Confidence 99863321 134444 445554434666666664
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00066 Score=50.48 Aligned_cols=92 Identities=13% Similarity=0.131 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcCCCH--HHHHHHHhh----c-CCCccccc
Q 022834 165 NGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSGLDP--RTLLDVLDL----G-GIANPMFK 216 (291)
Q Consensus 165 ~a~~~k~~~n~~~~~~---------------------~~~~~E~~~~~~~~g~~~--~~~~~~~~~----~-~~~s~~~~ 216 (291)
...|.|++.|...+.. ..++.|+..++++.|++. +.+.+.+.. . ...+++++
T Consensus 4 ~~~w~Kl~~n~~~n~l~al~~~~~g~l~~~~~~~~~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~~~SM~~ 83 (125)
T PF08546_consen 4 RERWEKLIFNAAINPLTALTGCTNGELLENPEARELIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTPDNRSSMLQ 83 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-HHHHHHSHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTTTT--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcHHHHHhChhHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCccccHHH
Confidence 4567788877666553 446779999999998643 323333321 1 11222222
Q ss_pred ccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 022834 217 GKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK 266 (291)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~ 266 (291)
+. ..+.. ++ .-.-.+++++.|+++|+++|.++.++++++.
T Consensus 84 D~----~~gr~-----tE-id~i~G~vv~~a~~~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 84 DI----EAGRP-----TE-IDYINGYVVRLAKKHGVPTPVNETIYALVKA 123 (125)
T ss_dssp HH----HTTB-------S-HHHTHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HH----HHccc-----cc-HHHHHHHHHHHHHHHCCCCcHHHHHHHHHHH
Confidence 11 01110 00 1111478999999999999999999998875
|
1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B .... |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00012 Score=63.16 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=60.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC--cEEEEcCCcchhH----HHHHC--CCccc-----CCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVAH--GATVG-----GSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~--~V~~~~r~~~~~~----~l~~~--g~~~~-----~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+ |.+|..++..|+..+. ++.++|++ +++ .+.+- ...+. +++.+.++++|+||++...
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 89999999 9999999999998884 79999987 322 12221 11222 2235778899999998743
Q ss_pred HH---------------HHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 67 PA---------------AALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 67 ~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
+. -++++. +.+.++ .++.+++..||-.
T Consensus 79 ~~k~g~tR~dll~~N~~i~~~i~---~~i~~~-~p~a~vivvtNPv 120 (310)
T cd01337 79 PRKPGMTRDDLFNINAGIVRDLA---TAVAKA-CPKALILIISNPV 120 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCeEEEEccCch
Confidence 21 233344 444444 3677777776653
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0002 Score=60.94 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=56.1
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||.|. +|.+++..|.+.|.+|+++++.. .++.+.++++|+||.|++++.- + .
T Consensus 161 ~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~~----v---~-- 217 (283)
T PRK14192 161 HAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPEL----I---K-- 217 (283)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCCc----C---C--
Confidence 789999998 99999999999999999998732 2455666899999999976441 2 1
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
...++++.+++|....
T Consensus 218 ~~~lk~gavViDvg~n 233 (283)
T PRK14192 218 KDWIKQGAVVVDAGFH 233 (283)
T ss_pred HHHcCCCCEEEEEEEe
Confidence 2346788999987644
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0003 Score=55.57 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=29.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
||+|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999997 599999875
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00033 Score=57.75 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=68.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEE-EEcC----------CcchhHHHHHC-C-------CcccCCHHHH-HhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR----------TLSKCDELVAH-G-------ATVGGSPAEV-IKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~-~~~r----------~~~~~~~l~~~-g-------~~~~~~~~~~-~~~~dvv 60 (291)
++|+|.|+|.+|..++..|.+.|.+|+ +.|. +.+.+...++. | .... +.+++ -.+||++
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dvl 110 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDIL 110 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccEE
Confidence 589999999999999999999999988 6676 55555544443 2 1111 22232 2378999
Q ss_pred EEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 61 ii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+-|.+...-..+.+ +++ +=++|+.-+|... + .+..+.+.++|+.|+
T Consensus 111 ip~a~~~~i~~~~~---~~l-----~a~~I~egAN~~~-t-~~a~~~L~~rGi~~~ 156 (227)
T cd01076 111 IPAALENQITADNA---DRI-----KAKIIVEAANGPT-T-PEADEILHERGVLVV 156 (227)
T ss_pred EecCccCccCHHHH---hhc-----eeeEEEeCCCCCC-C-HHHHHHHHHCCCEEE
Confidence 99986544333343 222 2356676665533 3 556677888888775
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0002 Score=60.69 Aligned_cols=110 Identities=25% Similarity=0.305 Sum_probs=72.7
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC----CCc-ccCCHHHH--HhhCCEEEEecCCHHHHHH-
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH----GAT-VGGSPAEV--IKKCTITIGMLADPAAALS- 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~----g~~-~~~~~~~~--~~~~dvvii~vp~~~~~~~- 72 (291)
++.|+|+|..+.+++..|++.| .+|++++|+.++++.+.+. +.. ......+. ..++|+||-|||-...-..
T Consensus 128 ~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~ 207 (283)
T COG0169 128 RVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEG 207 (283)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCCCC
Confidence 6899999999999999999999 5799999999999988764 211 11122211 2258999999986543321
Q ss_pred --HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 73 --VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 73 --v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
.+ . ...++++.++.|+--....+ .+.+...+.|...++.
T Consensus 208 ~~~~----~-~~~l~~~~~v~D~vY~P~~T--plL~~A~~~G~~~idG 248 (283)
T COG0169 208 DSPV----P-AELLPKGAIVYDVVYNPLET--PLLREARAQGAKTIDG 248 (283)
T ss_pred CCCC----c-HHhcCcCCEEEEeccCCCCC--HHHHHHHHcCCeEECc
Confidence 11 1 34566888888875443222 2344455667665544
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00025 Score=63.86 Aligned_cols=91 Identities=15% Similarity=0.175 Sum_probs=62.7
Q ss_pred eEEEEec-ChhhHHHHHHHHhC-------CC--cEEEEcCCcchhHHHHH----------CCCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGL-GIMGKAISMNLLRN-------GF--KVTVWNRTLSKCDELVA----------HGATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~-------g~--~V~~~~r~~~~~~~l~~----------~g~~~~~~~~~~~~~~dvvi 61 (291)
||+|||+ |.+|..++..|+.. +. ++.++|++.++++...- ..+.+..+..+.+++||+||
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiVV 181 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWAL 181 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEEE
Confidence 8999999 99999999999987 54 68899999888764321 12333345567788999999
Q ss_pred EecCCHH---------------HHHHHHhccCccccccCCCcEEEEcCC
Q 022834 62 GMLADPA---------------AALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 62 i~vp~~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
++-..+. -++++. +.+.+...++.+++..||
T Consensus 182 itAG~prkpG~tR~dLl~~N~~I~k~i~---~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 182 LIGAKPRGPGMERADLLDINGQIFAEQG---KALNEVASRNVKVIVVGN 227 (444)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHhcCCCeEEEEcCC
Confidence 9864321 134444 445553346666776664
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00015 Score=62.97 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=66.9
Q ss_pred CeEEEEecChhhHHHHHHHHhC------C--CcEE-EEcCCcchh-------HHH---HHCC-C--cccC--CHHHHH-h
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN------G--FKVT-VWNRTLSKC-------DEL---VAHG-A--TVGG--SPAEVI-K 55 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~------g--~~V~-~~~r~~~~~-------~~l---~~~g-~--~~~~--~~~~~~-~ 55 (291)
|||+|+|+|.+|..+++.|.++ | .+|+ +.|++.... +.+ .+.| . .... +.+++. .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 8999999999999999999873 3 3433 446553211 121 1212 1 1112 445543 3
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCH-HHHHHHHHHHHhcCCcEE-EcccC
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH-ETSIKISRAITSKGGHFL-EAPVS 121 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ 121 (291)
++|++|-|+|....-.... .-+.+.+..|..||..+.... ....++.+...+.+..+. ++.+-
T Consensus 81 ~~DVvVE~t~~~~~g~~~~---~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~ 145 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREK---NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVA 145 (326)
T ss_pred CCCEEEECCCCCCcCchHH---HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeee
Confidence 6899999997532111112 223455678888886554321 234555555666677665 55444
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00018 Score=62.70 Aligned_cols=65 Identities=26% Similarity=0.353 Sum_probs=50.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-------CCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-------GSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~~dvvii~vp 65 (291)
|||.|.|+ |.+|+.++..|.++||+|++.+|++++...+...++.+. .+..++++++|+||.+++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 89999985 999999999999999999999998776655554454331 234456778999998763
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00017 Score=62.27 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=47.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHH----HC-------CCcccCCHHHHHhhCCEEEEecC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----AH-------GATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~----~~-------g~~~~~~~~~~~~~~dvvii~vp 65 (291)
||+|||+|.+|..+|..|...+. ++.++|+++++++... .. .+.+.....+.+++||+||++..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 79999999999999999998875 6999999877664322 10 12233334567789999999863
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00036 Score=58.98 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=58.4
Q ss_pred CeEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.++.|||-|. +|..++..|.+.|..|++++.. +.++.+..+++|+||.++..+.-+.
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvv~AvG~p~~i~-------- 222 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------------TDDLKKYTLDADILVVATGVKHLIK-------- 222 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------------CCCHHHHHhhCCEEEEccCCccccC--------
Confidence 3789999999 9999999999999999999843 1366778899999999997764322
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
...+++|.+|||.+..
T Consensus 223 -~~~vk~gavVIDvGin 238 (287)
T PRK14176 223 -ADMVKEGAVIFDVGIT 238 (287)
T ss_pred -HHHcCCCcEEEEeccc
Confidence 1246789999998764
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=62.33 Aligned_cols=92 Identities=12% Similarity=0.166 Sum_probs=59.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCCcc--hhHH----HHH------CCCcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLS--KCDE----LVA------HGATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~--~~~~----l~~------~g~~~~~~~~~~~~~~dvv 60 (291)
+||+|||+ |.+|..++..|...+. ++.++|++++ +++. +.+ ....+..+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999887653 7999998543 2321 111 1233444566778899999
Q ss_pred EEecCCHH---------------HHHHHHhccCccccccCCCcEEEEcCC
Q 022834 61 IGMLADPA---------------AALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 61 ii~vp~~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
|++-..+. -++++. +++.++.+++.+++..||
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~---~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQG---KALNEVAARDVKVLVVGN 131 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHH---HHHHHhCCCCeEEEEeCC
Confidence 99863211 134444 455554445667676664
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00038 Score=63.77 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=64.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc--C---------------C----------HHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--G---------------S----------PAEVI 54 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~---------------~----------~~~~~ 54 (291)
|+.|+|+|.+|...+..+...|.+|+++|+++++.+.+...|.... + + ..+..
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~ 245 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQA 245 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999998887776664430 0 1 22335
Q ss_pred hhCCEEEEec-----CCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 55 KKCTITIGML-----ADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 55 ~~~dvvii~v-----p~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+++|++|.|+ |.+.- +. ++....+++|.+|||++..
T Consensus 246 ~~~DIVI~TalipG~~aP~L---it---~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 246 KEVDIIITTALIPGKPAPKL---IT---EEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred CCCCEEEECcccCCCCCCee---eh---HHHHhhCCCCCEEEEeeeC
Confidence 6799999988 33211 11 2334556788999998864
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00014 Score=64.50 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=58.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHCC-------CcccCCHH-HHHhhCCEEEEecCCHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHG-------ATVGGSPA-EVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g-------~~~~~~~~-~~~~~~dvvii~vp~~~~~ 70 (291)
|||+|+|+ |..|..+.+.|.++ .++++.+.++...-+.+.... .....+.+ +.++++|+||+|+|.. ..
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~-~s 117 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG-TT 117 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-HH
Confidence 58999998 99999999999987 678888766543332222211 11111112 2247899999999774 44
Q ss_pred HHHHhccCccccccCCCcEEEEcCCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.++. +. +..+..|||+|+.
T Consensus 118 ~~i~---~~----~~~g~~VIDlSs~ 136 (381)
T PLN02968 118 QEII---KA----LPKDLKIVDLSAD 136 (381)
T ss_pred HHHH---HH----HhCCCEEEEcCch
Confidence 5555 33 2357889999976
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00025 Score=60.72 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=46.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHH----HC------CCcccC-CHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELV----AH------GATVGG-SPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~----~~------g~~~~~-~~~~~~~~~dvvii~v 64 (291)
|||+|||+|.+|.+++..|...+ .++.++|++.++++--. +. ...+.. ...+.++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 79999999999999999997765 47999999866554221 11 122222 2245678999999997
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=66.22 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=48.1
Q ss_pred CeEEEEecChhhHHHHH--HHH----hCCCcEEEEcCCcchhHHHHH--------CC----CcccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAISM--NLL----RNGFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~--~l~----~~g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvvii 62 (291)
|||+|||+|+||...+. .++ -.+++|+++|+++++++.... .+ +..+.+..+++++||+||+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 69999999999966655 554 145689999999988763211 12 2335676788899999999
Q ss_pred ecCC
Q 022834 63 MLAD 66 (291)
Q Consensus 63 ~vp~ 66 (291)
++..
T Consensus 82 ti~v 85 (431)
T PRK15076 82 AIQV 85 (431)
T ss_pred eeee
Confidence 9743
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00018 Score=61.35 Aligned_cols=111 Identities=19% Similarity=0.183 Sum_probs=69.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-----CC---cccC--CHHHHHhhCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----GA---TVGG--SPAEVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-----g~---~~~~--~~~~~~~~~dvvii~vp~~~~~ 70 (291)
++.|+|+|..|.+++..|++.|. +|++++|+.++++.+.+. +. ...+ +..+....+|+||=|+|-...-
T Consensus 129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~ 208 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPA 208 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCC
Confidence 68899999999999999999885 699999999999888653 11 1111 1123456789999999743210
Q ss_pred HHHHhccCcc-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 71 LSVVFDKGGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 71 ~~v~~~~~~l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
..-. .+ ...+.++.++.|+.-....+ .+.+...+.|+..++.
T Consensus 209 ~~~~----~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~G 251 (283)
T PRK14027 209 HPGT----AFDVSCLTKDHWVGDVVYMPIET--ELLKAARALGCETLDG 251 (283)
T ss_pred CCCC----CCCHHHcCCCcEEEEcccCCCCC--HHHHHHHHCCCEEEcc
Confidence 0000 01 12355667888876443222 2333445556655543
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00046 Score=59.23 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=67.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCc-EEEEcCCc---chhHHHHHC----C--Ccc--c--CC---HHHHHhhCCEEEEec
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTL---SKCDELVAH----G--ATV--G--GS---PAEVIKKCTITIGML 64 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~---~~~~~l~~~----g--~~~--~--~~---~~~~~~~~dvvii~v 64 (291)
++.|+|+|.+|.+++..|++.|.+ |++++|+. ++++.+.+. + ... . ++ ..+.+..+|++|-|+
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaT 207 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNAT 207 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeC
Confidence 578999999999999999999986 99999986 566555431 1 111 1 11 223345689999999
Q ss_pred CCHHHHH-HHHhccCcc--ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 65 ADPAAAL-SVVFDKGGV--LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 65 p~~~~~~-~v~~~~~~l--~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
|-...-. +- ..+ ...+.++.+++|+.-....+ .+.+...+.|+..++.
T Consensus 208 p~Gm~~~~~~----~~~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~G 258 (289)
T PRK12548 208 LVGMKPNDGE----TNIKDTSVFRKDLVVADTVYNPKKT--KLLEDAEAAGCKTVGG 258 (289)
T ss_pred CCCCCCCCCC----CCCCcHHhcCCCCEEEEecCCCCCC--HHHHHHHHCCCeeeCc
Confidence 7543100 00 011 12456778888876543322 2334445556655543
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00036 Score=61.09 Aligned_cols=116 Identities=21% Similarity=0.269 Sum_probs=67.7
Q ss_pred CeEEEEecChhhHHHHHHHHh--------CCCc--EE-EEcCCcch-------hHHHH---HC-CC--cc-------cCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLR--------NGFK--VT-VWNRTLSK-------CDELV---AH-GA--TV-------GGS 49 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~--------~g~~--V~-~~~r~~~~-------~~~l~---~~-g~--~~-------~~~ 49 (291)
++|+|+|+|.+|..+++.|.+ .|.+ |. +.|++... ...+. +. +. .. ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 489999999999999999877 4643 33 33543221 11211 11 10 01 115
Q ss_pred HHHHH--hhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEE-EcccCCC
Q 022834 50 PAEVI--KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFL-EAPVSGS 123 (291)
Q Consensus 50 ~~~~~--~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~ 123 (291)
.++++ .++|++|-+++. ....+.+ ...+..+..||..++.. ....+++.+...+.+..+. .+.+.++
T Consensus 83 ~~ell~~~~~DVvVd~t~~-~~a~~~~------~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~G 153 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTND-KNAHEWH------LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAG 153 (336)
T ss_pred HHHHHhcCCCCEEEECCCc-HHHHHHH------HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEecccccc
Confidence 66766 478999999944 4555555 34456778888665541 2344556555556677766 4434433
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00091 Score=54.72 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=65.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCc-EEEEcCCc----------chhHHHHHCC-CcccC-----CHHHH-HhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTL----------SKCDELVAHG-ATVGG-----SPAEV-IKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~----------~~~~~l~~~g-~~~~~-----~~~~~-~~~~dvvii 62 (291)
++|+|.|+|++|..++..|.+.|.. |.+.|.+. +..+...+.+ +...+ +.+++ -.+||+++-
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlip 103 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAP 103 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEee
Confidence 5899999999999999999999885 55678877 5555444432 22111 12232 237999999
Q ss_pred ecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 63 ~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
|.+...-..+.. +.+ +=++|+...|... +. +..+.+.++|+.|+
T Consensus 104 aA~~~~i~~~~a-------~~l-~a~~V~e~AN~p~-t~-~a~~~L~~~Gi~v~ 147 (217)
T cd05211 104 CALGNVIDLENA-------KKL-KAKVVAEGANNPT-TD-EALRILHERGIVVA 147 (217)
T ss_pred ccccCccChhhH-------hhc-CccEEEeCCCCCC-CH-HHHHHHHHCCcEEE
Confidence 986543222222 222 2356666555432 22 45667778886554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00044 Score=59.41 Aligned_cols=89 Identities=18% Similarity=0.265 Sum_probs=56.3
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC-----C---Cccc-CCHHHH-HhhCCEEEEecCCHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-----G---ATVG-GSPAEV-IKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-----g---~~~~-~~~~~~-~~~~dvvii~vp~~~ 68 (291)
|||+|+|+ |.-|..|.+.|..+- .++.++..+..+-+.+.+. | .... .+.+++ .++||+||+|+|...
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~ 82 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGV 82 (349)
T ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchh
Confidence 59999987 999999999998764 4666665443222233322 1 1111 133333 445999999999866
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
..+-+- .+ +.++..|||+|..
T Consensus 83 s~~~v~----~l---~~~g~~VIDLSad 103 (349)
T COG0002 83 SAELVP----EL---LEAGCKVIDLSAD 103 (349)
T ss_pred HHHHHH----HH---HhCCCeEEECCcc
Confidence 543332 22 3356669999986
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0019 Score=52.46 Aligned_cols=65 Identities=22% Similarity=0.210 Sum_probs=49.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc-hhHHHHHCC-Cccc---CCHHHHHhhCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATVG---GSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g-~~~~---~~~~~~~~~~dvvii~vp~~ 67 (291)
+|.|||.|.+|..-++.|.+.|.+|++++.+.. ..+.+.+.| +... .. .+.+.++++||.|+.++
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDDE 80 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCCH
Confidence 799999999999999999999999999987643 345555553 3321 12 33467899999998665
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00085 Score=50.80 Aligned_cols=73 Identities=23% Similarity=0.280 Sum_probs=48.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+|.|+|- ...|..++..|.+.|.+|++.+++. .+.++.+++||+|+.+++.+.- + +
T Consensus 30 ~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~----i---~-- 86 (140)
T cd05212 30 KVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEK----V---P-- 86 (140)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCc----c---C--
Confidence 4555554 4456666666666666666665431 2677888999999999977532 2 1
Q ss_pred ccccCCCcEEEEcCCCC
Q 022834 81 LEQICPGKGYIDMSTVD 97 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~ 97 (291)
..++++|.+|+|.+...
T Consensus 87 ~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 TEWIKPGATVINCSPTK 103 (140)
T ss_pred HHHcCCCCEEEEcCCCc
Confidence 34578999999877654
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00031 Score=61.58 Aligned_cols=89 Identities=19% Similarity=0.183 Sum_probs=56.5
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcE---EEEcCCcchhHHHHHCC--CcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKV---TVWNRTLSKCDELVAHG--ATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V---~~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|+|+ |..|..+.+.|.+++|++ ....+..+.-+.+.-.+ +.+.+...+.++++|+||+|+|.. ...+..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKYA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHHH
Confidence 69999987 999999999999988863 55544333322222112 222221122346899999999774 344444
Q ss_pred hccCccccccCCCcEEEEcCCC
Q 022834 75 FDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+++ +..|..|||+|..
T Consensus 81 ---~~~---~~~G~~VIDlS~~ 96 (334)
T PRK14874 81 ---PKA---AAAGAVVIDNSSA 96 (334)
T ss_pred ---HHH---HhCCCEEEECCch
Confidence 222 3467789998865
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00045 Score=58.42 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=57.6
Q ss_pred CeEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.++.|||-| .+|..++..|.++|..|+++.... .++.+.+++||+||.+++++.-+.
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~i~-------- 215 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDLIK-------- 215 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCcCC--------
Confidence 378999999 999999999999999999885421 245677899999999997754322
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 216 -~~~vk~GavVIDvGi~ 231 (285)
T PRK14191 216 -ASMVKKGAVVVDIGIN 231 (285)
T ss_pred -HHHcCCCcEEEEeecc
Confidence 2346799999998755
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00013 Score=51.61 Aligned_cols=71 Identities=28% Similarity=0.325 Sum_probs=51.5
Q ss_pred eEEEEecChhhHHHHHHH-HhCCCcE-EEEcCCcchhHHHHHCCCcccCCHHHHHhh--CCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNL-LRNGFKV-TVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l-~~~g~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--~dvvii~vp~~~~~~~v~ 74 (291)
|++|+|+|++|.+++..+ ...|+.+ .++|.++++...-. .|+.+..+.+++.+. .|+.++|+|.. ...++.
T Consensus 5 ~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~-~a~~~~ 79 (96)
T PF02629_consen 5 NVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAE-AAQEVA 79 (96)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HH-HHHHHH
T ss_pred eEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHH-HHHHHH
Confidence 689999999999998554 4567774 46788887654211 267777788888877 99999999764 455554
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00055 Score=55.48 Aligned_cols=112 Identities=18% Similarity=0.211 Sum_probs=64.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.-....+..+ |...+....+.++ +.++-+.+.+....-
T Consensus 23 ~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~ 102 (202)
T TIGR02356 23 HVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTA 102 (202)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCH
Confidence 79999999999999999999996 799999874333333222 2111111222222 245544444221110
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (291)
+ - +...+.+-++||+++. .+.....+.+...+.+..++.+...
T Consensus 103 ~-~------~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~ip~i~~~~~ 145 (202)
T TIGR02356 103 E-N------LELLINNVDLVLDCTD-NFATRYLINDACVALGTPLISAAVV 145 (202)
T ss_pred H-H------HHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEec
Confidence 1 1 1122334467776653 4555556667777778888866543
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00029 Score=61.30 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=46.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCCc--chhHHHH----HC------CCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKCDELV----AH------GATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~~--~~~~~l~----~~------g~~~~~~~~~~~~~~dvvi 61 (291)
||+|||+ |.+|..++..|+..|. ++.++|+++ ++++... +. +..+..+..+.+++||+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 8999999 9999999999997652 599999987 5433211 11 1233356667889999999
Q ss_pred EecC
Q 022834 62 GMLA 65 (291)
Q Consensus 62 i~vp 65 (291)
++-.
T Consensus 82 itAG 85 (323)
T cd00704 82 LVGA 85 (323)
T ss_pred EeCC
Confidence 9863
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00048 Score=59.97 Aligned_cols=88 Identities=22% Similarity=0.158 Sum_probs=60.8
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-C-CcEEEEcCCcchhHHHHHCC-CcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAHG-ATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~~g-~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++|.|+|+ |.||+.+++.|..+ | .++++++|+.+++..+..+. .....+.++.+.++|+|+.++..+. .+..
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~---~~~I- 231 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK---GVEI- 231 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc---CCcC-
Confidence 37999998 89999999999864 5 58999999988887776542 1122356677888999998883322 1110
Q ss_pred cCccccccCCCcEEEEcCC
Q 022834 77 KGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~ 95 (291)
. ...++++.+++|.+-
T Consensus 232 -~--~~~l~~~~~viDiAv 247 (340)
T PRK14982 232 -D--PETLKKPCLMIDGGY 247 (340)
T ss_pred -C--HHHhCCCeEEEEecC
Confidence 1 023357778888764
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00066 Score=57.26 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=57.5
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ -+|..++..|.++|..|+++... +.++.+..+++|+||.+++++.-+.
T Consensus 159 ~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------------T~~l~~~~~~ADIvV~AvGkp~~i~--------- 215 (281)
T PRK14183 159 DVCVVGASNIVGKPMAALLLNANATVDICHIF--------------TKDLKAHTKKADIVIVGVGKPNLIT--------- 215 (281)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CcCHHHHHhhCCEEEEecCcccccC---------
Confidence 78999998 89999999999999999988642 1356778899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 216 ~~~vk~gavvIDvGin 231 (281)
T PRK14183 216 EDMVKEGAIVIDIGIN 231 (281)
T ss_pred HHHcCCCcEEEEeecc
Confidence 2346799999998755
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00033 Score=64.30 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=64.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc--CC---------------HH------HH----H
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GS---------------PA------EV----I 54 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~---------------~~------~~----~ 54 (291)
|+.|+|+|.+|...+..+...|.+|+++|+++++.+...+.|.... +. .+ +. .
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~ 246 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQA 246 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhcc
Confidence 7999999999999999999999999999999999988888776621 11 01 11 1
Q ss_pred hhCCEEEEecCCHHH--HHHHHhccCccccccCCCcEEEEcCC
Q 022834 55 KKCTITIGMLADPAA--ALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 55 ~~~dvvii~vp~~~~--~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
+.+|++|.|+..+.. -.-+. ++....++++..|+|++.
T Consensus 247 ~gaDVVIetag~pg~~aP~lit---~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 247 KEVDIIITTALIPGKPAPKLIT---AEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCCCEEEECCCCCcccCcchHH---HHHHHhcCCCCEEEEEcc
Confidence 458999999853221 01111 223345668888888875
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00035 Score=61.25 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=54.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCc---EEEE--cCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVW--NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~---V~~~--~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|+|+ |..|..+.+.|.+.+|. +... .|+..+.-........+.....+.+.++|++|+|+|... ..+..
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~-s~~~~ 86 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI-SKKFG 86 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHH-HHHHH
Confidence 58999987 99999999999998874 3323 233222211111112222212234578999999998753 44444
Q ss_pred hccCccccccCCCcEEEEcCCC
Q 022834 75 FDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+++ ...|..|||+|..
T Consensus 87 ---~~~---~~~g~~VIDlS~~ 102 (344)
T PLN02383 87 ---PIA---VDKGAVVVDNSSA 102 (344)
T ss_pred ---HHH---HhCCCEEEECCch
Confidence 222 2467899999865
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0022 Score=58.09 Aligned_cols=112 Identities=16% Similarity=0.095 Sum_probs=66.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHH---HHHHHHhc-c
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA---AALSVVFD-K 77 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~---~~~~v~~~-~ 77 (291)
+|.|||.|.+|.+++..|.+.|++|+++|++++.........-......+...+++|++|.+.+.+. .++..... .
T Consensus 5 ~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~g~ 84 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIASHI 84 (418)
T ss_pred eEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHCCC
Confidence 7999999999999999999999999999987664432110000112233444567898888764322 22222210 0
Q ss_pred ---Cc--c-ccc--c-CCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 78 ---GG--V-LEQ--I-CPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 78 ---~~--l-~~~--l-~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
.+ + ... . ....+-|.-|++...+..-+.+.+...+.
T Consensus 85 ~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~ 129 (418)
T PRK00683 85 PVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGI 129 (418)
T ss_pred cEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 00 0 000 1 11234566667777777777787876653
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=60.48 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=72.2
Q ss_pred eEEEEec----ChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGL----GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~----G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
+|+|||+ |.+|..+.++|.+.|| +|+.+++..+.. .|.+++.+.+++-...|++++++|. ..+.+++
T Consensus 9 siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l- 81 (447)
T TIGR02717 9 SVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVV- 81 (447)
T ss_pred EEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecCH-HHHHHHH-
Confidence 6999999 8899999999999998 576666653321 3888899999988889999999965 6677777
Q ss_pred ccCccccccCCCcEEEEcCCCCHH-------HHHHHHHHHHhcCCcEEE
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHE-------TSIKISRAITSKGGHFLE 117 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~-------~~~~~~~~~~~~~~~~~~ 117 (291)
+++... .-..+++ +|.+.++ ..+++.+...+.|+.++.
T Consensus 82 --~e~~~~-gv~~~vi-~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 82 --EECGEK-GVKGAVV-ITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred --HHHHhc-CCCEEEE-ECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 555442 1223333 3544332 234555666666666553
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0033 Score=57.72 Aligned_cols=115 Identities=14% Similarity=0.123 Sum_probs=69.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch-----hHHHHHCCCcccC--CHHHHHhhCCEEEEec---CCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-----CDELVAHGATVGG--SPAEVIKKCTITIGML---ADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~-----~~~l~~~g~~~~~--~~~~~~~~~dvvii~v---p~~~~~ 70 (291)
.||+|+|.|..|.+++..|.+.|++|+++|+++.. .+.+.+.|+.+.. ...+.+.++|+||.+- |+...+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~~~p~~ 94 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRIDSPEL 94 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCCCchHH
Confidence 37999999999999999999999999999976531 2346666766532 2234457899888763 121222
Q ss_pred HHHHh-cc---Cc--c-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE
Q 022834 71 LSVVF-DK---GG--V-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 71 ~~v~~-~~---~~--l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
..... +. .+ + ....+...+-|.-|++...+.+-+...+...+...
T Consensus 95 ~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 95 VKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred HHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 22211 00 01 1 11111123445555667777777777777665543
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0024 Score=58.99 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=70.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC--CHHHHHhhCCEEEEecCCH---HHHHHHHh-
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--SPAEVIKKCTITIGMLADP---AAALSVVF- 75 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--~~~~~~~~~dvvii~vp~~---~~~~~v~~- 75 (291)
+|.|+|+|..|.+.++.|.+.|++|+++|++++..+.+.+.|+.... ...+.++++|+||.+-.-+ ..+...-.
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~a~~~ 93 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAAAAAA 93 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHHHHHC
Confidence 79999999999999999999999999999877666666666765532 2334566889888875221 11221110
Q ss_pred cc---C--ccc-cc-----cC-C-CcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 76 DK---G--GVL-EQ-----IC-P-GKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 76 ~~---~--~l~-~~-----l~-~-~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
+. . ++. .. .. + ..+-|.-|++...+..-+.+.+...+..
T Consensus 94 gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~ 145 (488)
T PRK03369 94 GVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRR 145 (488)
T ss_pred CCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCc
Confidence 00 0 111 00 01 2 2344555666777777777777776543
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00057 Score=59.83 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=62.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC----------CCcccCCHHHHHh--hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIK--KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~----------g~~~~~~~~~~~~--~~dvvii~vp~~~ 68 (291)
+|.|||+|.+|+.++..|+..|+ +++++|++.-....+..+ |..-+....+.++ +.++-+.+.....
T Consensus 26 ~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~ 105 (338)
T PRK12475 26 HVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDV 105 (338)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 79999999999999999999997 799999875222222111 1111111112121 3455555543211
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEccc
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (291)
. .+.+ +++ +..-++||+++. ...+...+.+...+.++.++.+..
T Consensus 106 ~-~~~~---~~~---~~~~DlVid~~D-~~~~r~~in~~~~~~~ip~i~~~~ 149 (338)
T PRK12475 106 T-VEEL---EEL---VKEVDLIIDATD-NFDTRLLINDLSQKYNIPWIYGGC 149 (338)
T ss_pred C-HHHH---HHH---hcCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEe
Confidence 1 1111 112 334468888764 344445566666677887775543
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00064 Score=60.26 Aligned_cols=91 Identities=12% Similarity=0.169 Sum_probs=59.4
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCC-----cEE--EE--cCCcchhHHHHH----------CCCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGF-----KVT--VW--NRTLSKCDELVA----------HGATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~-----~V~--~~--~r~~~~~~~l~~----------~g~~~~~~~~~~~~~~dvvi 61 (291)
||+|||+ |.+|..++..|...+. +|. ++ |++.++++...- .++.+..+..+.+++||+||
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVV 125 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWAL 125 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEE
Confidence 8999999 9999999999998763 234 44 888877654321 12333445567788999999
Q ss_pred EecCCHH---------------HHHHHHhccCccccccCCCcEEEEcCC
Q 022834 62 GMLADPA---------------AALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 62 i~vp~~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
++-..+. -++++. +.+.++.+++.+++..||
T Consensus 126 itAG~prkpg~tR~dll~~N~~I~k~i~---~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 126 LIGAKPRGPGMERADLLDINGQIFADQG---KALNAVASKNCKVLVVGN 171 (387)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHhCCCCeEEEEcCC
Confidence 9863321 133444 445554446666666664
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.002 Score=58.92 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=52.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--CCccc----CCHHHH----HhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--GATVG----GSPAEV----IKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--g~~~~----~~~~~~----~~~~dvvii~vp~~ 67 (291)
++|.|+|+|.+|..++..|.+.|++|+++++++++.+.+.+. +..+. .+.+.+ ++++|.++++++++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 479999999999999999999999999999999998888764 33221 122221 34789999888654
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00038 Score=56.99 Aligned_cols=67 Identities=25% Similarity=0.325 Sum_probs=45.8
Q ss_pred eEEEEecChhhHHHHHHHH--hCCCcEE-EEcCCcchhHHHHHCCC--cccCCHHHHHhh--CCEEEEecCCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLL--RNGFKVT-VWNRTLSKCDELVAHGA--TVGGSPAEVIKK--CTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~--~~g~~V~-~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~--~dvvii~vp~~~~ 69 (291)
+|+|||+|.+|..++..+. ..|+++. ++|+++++..... .|. ...++..+++++ .|.+++|+|...+
T Consensus 86 rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~ 159 (213)
T PRK05472 86 NVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAA 159 (213)
T ss_pred EEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhH
Confidence 7999999999999998643 4678766 5688766543221 122 223355666654 8999999987553
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0012 Score=57.10 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=58.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC-----CHHHHH-hhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG-----SPAEVI-KKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~-----~~~~~~-~~~dvvii~vp~~~~~~~v~~ 75 (291)
+|+|+|+|.+|..-.+.....|.+|+.++|++++.+...+.|....- +..+.+ +.+|+++.++| +..+...+
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l- 246 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSL- 246 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHH-
Confidence 79999999998877777777899999999999999888877654211 111222 23888888887 55555544
Q ss_pred ccCccccccCCCcEEEEcCC
Q 022834 76 DKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~ 95 (291)
+.++++..++....
T Consensus 247 ------~~l~~~G~~v~vG~ 260 (339)
T COG1064 247 ------KALRRGGTLVLVGL 260 (339)
T ss_pred ------HHHhcCCEEEEECC
Confidence 33445554454333
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00048 Score=59.52 Aligned_cols=92 Identities=18% Similarity=0.282 Sum_probs=59.5
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCC--cEEEEcCCcchhH--HHHHC--CCccc----C-CHHHHHhhCCEEEEecCCHH-
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCD--ELVAH--GATVG----G-SPAEVIKKCTITIGMLADPA- 68 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~--~V~~~~r~~~~~~--~l~~~--g~~~~----~-~~~~~~~~~dvvii~vp~~~- 68 (291)
||+|||+ |.+|..++..|...++ ++.++|+++...+ .+.+. ...+. + +..+.++++|+||++...+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 7999999 9999999999998875 7999998762211 12211 11222 1 23577889999999874321
Q ss_pred --------------HHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 69 --------------AALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 69 --------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
-++++. +.+.+. .++.+++..||-.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~---~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLV---AAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCccHHHHHHHhHHHHHHHH---HHHHHh-CCCeEEEEecCch
Confidence 233344 444444 3677777776653
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00066 Score=56.24 Aligned_cols=63 Identities=27% Similarity=0.349 Sum_probs=49.7
Q ss_pred EEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcc--hhHHHHHCCCccc-------CCHHHHHhhCCEEEEecC
Q 022834 3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAHGATVG-------GSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 3 I~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~~g~~~~-------~~~~~~~~~~dvvii~vp 65 (291)
|.|+|+ |.+|..++..|.+.+|+|++..|++. ..+.+.+.|+.+. +++.++++++|.||+++|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 789986 99999999999999999999999864 3566777776532 233346678999999887
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0016 Score=59.77 Aligned_cols=114 Identities=16% Similarity=0.113 Sum_probs=68.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEec--CCH-----HHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML--ADP-----AAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~v--p~~-----~~~~~v~ 74 (291)
||.|||.|..|.+.+..|.+.|++|+++|+.+.....+...|+.......+.+.++|+||..- |.. ..+....
T Consensus 11 ~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~v~~a~ 90 (460)
T PRK01390 11 TVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWVVDLAR 90 (460)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHHHHHHH
Confidence 699999999999999999999999999998755455565667765432223346789887532 211 1233222
Q ss_pred hc----cC--ccc-cccC----CCcE-EEEcCCCCHHHHHHHHHHHHhcCCcE
Q 022834 75 FD----KG--GVL-EQIC----PGKG-YIDMSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 75 ~~----~~--~l~-~~l~----~~~~-vv~~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
.. .. ++. ..++ +.++ -|.-|++...+.+-+...+...+...
T Consensus 91 ~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~ 143 (460)
T PRK01390 91 AAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDV 143 (460)
T ss_pred HcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCe
Confidence 10 01 111 1110 2233 45555667777777777777665433
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=56.62 Aligned_cols=92 Identities=11% Similarity=0.073 Sum_probs=58.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC-------CcEEEEcCCcc--hhHH----HHH------CCCcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG-------FKVTVWNRTLS--KCDE----LVA------HGATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g-------~~V~~~~r~~~--~~~~----l~~------~g~~~~~~~~~~~~~~dvv 60 (291)
+||+|+|+ |.+|..++..|...+ .+|.++|+++. +++. +.+ ..+....+..+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 48999999 999999999998744 48999999653 2221 110 0122345556778899999
Q ss_pred EEecCCHH---------------HHHHHHhccCccccccCCCcEEEEcCC
Q 022834 61 IGMLADPA---------------AALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 61 ii~vp~~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
|++...+. -++++. +.+.+...++.+++..||
T Consensus 83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~---~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 83 ILVGAMPRKEGMERKDLLKANVKIFKEQG---EALDKYAKKNVKVLVVGN 129 (325)
T ss_pred EEeCCcCCCCCCCHHHHHHHHHHHHHHHH---HHHHHhCCCCeEEEEecC
Confidence 99863211 123333 445555445666666665
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00063 Score=59.06 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=45.9
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC--cEEEEcCCcchhH--HHHHC--CCcc-----cCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCD--ELVAH--GATV-----GGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~--~V~~~~r~~~~~~--~l~~~--g~~~-----~~~~~~~~~~~dvvii~vp 65 (291)
.||+|||+ |.+|..++..|+..+. ++.++|+++...+ .+.+. ...+ .++..+.++++|+||++..
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 38999999 9999999999997664 7999998762211 12211 1111 2334678899999999864
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0042 Score=56.03 Aligned_cols=116 Identities=19% Similarity=0.138 Sum_probs=71.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchh----HHHHHCCCcccC--CHHHHHhhCCEEEEe--cC-CHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC----DELVAHGATVGG--SPAEVIKKCTITIGM--LA-DPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~----~~l~~~g~~~~~--~~~~~~~~~dvvii~--vp-~~~~~~ 71 (291)
|||.|+|+|.-|.+.++.|.+.|++|+++|.++... ..+...++.+.. ...+...++|+|+.. +| +...++
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v~ 87 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLVE 87 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHHH
Confidence 689999999999999999999999999999766551 222334544322 222456678988875 21 112222
Q ss_pred HHH-hccC-----cccccc--CCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 72 SVV-FDKG-----GVLEQI--CPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 72 ~v~-~~~~-----~l~~~l--~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
... ++.+ ++.... ...-+-|.-|++...+..-+...+...|....
T Consensus 88 ~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~ 140 (448)
T COG0771 88 AAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDAL 140 (448)
T ss_pred HHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCce
Confidence 221 1110 111111 12234455667777788888888888776544
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0074 Score=55.17 Aligned_cols=113 Identities=21% Similarity=0.156 Sum_probs=68.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch----hHHHHHCCCccc--CCHHHHHhh-CCEEEEec--C-CHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK----CDELVAHGATVG--GSPAEVIKK-CTITIGML--A-DPAAAL 71 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~----~~~l~~~g~~~~--~~~~~~~~~-~dvvii~v--p-~~~~~~ 71 (291)
+|.|+|.|.+|.+.+..|++.|++|+++|++... .+.+.+.|+.+. ....+.... +|+||... | +...++
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~~~~~ 86 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTNPMVE 86 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCCHHHH
Confidence 6899999999999999999999999999976532 244555576553 234444444 89887754 2 222222
Q ss_pred HHHhc------cCcccccc-CCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 72 SVVFD------KGGVLEQI-CPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 72 ~v~~~------~~~l~~~l-~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
..... ..++...+ ....+-|.-|++...+..-+...+...+..
T Consensus 87 ~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~ 136 (447)
T PRK02472 87 KALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQH 136 (447)
T ss_pred HHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCC
Confidence 22210 00111111 223345556666777777777777766543
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0066 Score=55.95 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=68.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHH-HHCCCcccC--CHHHHHhhCCEEEEec--C-CHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-VAHGATVGG--SPAEVIKKCTITIGML--A-DPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-~~~g~~~~~--~~~~~~~~~dvvii~v--p-~~~~~~~v~ 74 (291)
+||.|+|+|..|.+++..|.+.|++|+++|+++.....+ .+.|+.+.. ...+.+.++|+||..- | +...+...-
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~~~a~ 95 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLLVDAQ 95 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHHHHHH
Confidence 379999999999999999999999999999876655443 334766532 2234456789888762 2 222222221
Q ss_pred hc-c---C--ccc------ccc-CCCc-EEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 75 FD-K---G--GVL------EQI-CPGK-GYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 75 ~~-~---~--~l~------~~l-~~~~-~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
.. . . ++. ... .+.+ +-|.-|++...+..-+...+...+..
T Consensus 96 ~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~ 149 (473)
T PRK00141 96 SQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFA 149 (473)
T ss_pred HCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCc
Confidence 10 0 0 010 001 1223 44555566777777777777766543
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00083 Score=57.85 Aligned_cols=79 Identities=24% Similarity=0.197 Sum_probs=52.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
+||+|||+ |..|..+.+.|.++.+ ++.....+..+ .. .+.++...++|++|+|+|.... .+.. +
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~~-~~~~~~~~~~DvvFlalp~~~s-~~~~---~ 68 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------DA-AARRELLNAADVAILCLPDDAA-REAV---A 68 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------cc-cCchhhhcCCCEEEECCCHHHH-HHHH---H
Confidence 48999985 9999999999998753 33333322211 11 2334555689999999987543 3343 2
Q ss_pred ccccccCCCcEEEEcCCC
Q 022834 79 GVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~ 96 (291)
++ ...|..|||+|..
T Consensus 69 ~~---~~~g~~VIDlSad 83 (313)
T PRK11863 69 LI---DNPATRVIDASTA 83 (313)
T ss_pred HH---HhCCCEEEECChh
Confidence 33 2467889999865
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0014 Score=56.07 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=68.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc---chhHHHHHCC-------CcccCCH------HHHHhhCCEEEEec
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL---SKCDELVAHG-------ATVGGSP------AEVIKKCTITIGML 64 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~---~~~~~l~~~g-------~~~~~~~------~~~~~~~dvvii~v 64 (291)
++.|+|+|..+.+++..|+..|. +|++++|++ ++++.+.+.- +.. .+. .+...++|+||-|+
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aDivINaT 204 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASADILTNGT 204 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccCCEEEECC
Confidence 68899999999999999998885 799999995 4777776531 112 122 22345789999999
Q ss_pred CCHHH--HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 65 ADPAA--ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 65 p~~~~--~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
|-... ..... ..-...++++.++.|+--....+ .+.+...++|+..++.
T Consensus 205 p~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~G 255 (288)
T PRK12749 205 KVGMKPLENESL---VNDISLLHPGLLVTECVYNPHMT--KLLQQAQQAGCKTIDG 255 (288)
T ss_pred CCCCCCCCCCCC---CCcHHHCCCCCEEEEecCCCccC--HHHHHHHHCCCeEECC
Confidence 75431 01101 00012355677888876443322 2344455667666543
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=55.90 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=57.4
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ .+|..++..|...|..|+++.++. .++.+.+++||+||.+++++.-+.
T Consensus 154 ~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~lv~--------- 210 (279)
T PRK14178 154 RAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGFIT--------- 210 (279)
T ss_pred EEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccccC---------
Confidence 68999998 999999999999999999887642 356788899999999998753221
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
...+++|.+|||.+..
T Consensus 211 ~~~vk~GavVIDVgi~ 226 (279)
T PRK14178 211 PDMVKPGATVIDVGIN 226 (279)
T ss_pred HHHcCCCcEEEEeecc
Confidence 1235799999998765
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00036 Score=58.81 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=72.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCc---ccC---CHHHHHhhCCEEEEec--CCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT---VGG---SPAEVIKKCTITIGML--ADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~---~~~---~~~~~~~~~dvvii~v--p~~~~~~~ 72 (291)
||.|||.|-+|..-++...--|.+|++.|+|.+++..+.+. +.+ ..+ ..++.+..+|++|-+| |....-+-
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkL 249 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKL 249 (371)
T ss_pred cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCcee
Confidence 78999999999999999888899999999999988877654 222 122 3456778899999886 33222222
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKI 104 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~ 104 (291)
+. +++.+.+++|.+|||...-...+++..
T Consensus 250 vt---~e~vk~MkpGsVivDVAiDqGGc~Et~ 278 (371)
T COG0686 250 VT---REMVKQMKPGSVIVDVAIDQGGCFETS 278 (371)
T ss_pred hh---HHHHHhcCCCcEEEEEEEcCCCceecc
Confidence 33 455667789999999876655554443
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00069 Score=59.18 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=53.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcE---EEEcCCcchhHH-HHHCC--CcccC-CHHHHHhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKV---TVWNRTLSKCDE-LVAHG--ATVGG-SPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V---~~~~r~~~~~~~-l~~~g--~~~~~-~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
|||+|+|+ |.+|..+.+.|.+++|.+ ... .+.+++.+ +.-.+ ..+.. +..+ ++++|++|+|+|.. ...+
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~~ 81 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSRS 81 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHHH
Confidence 58999997 999999999999877753 233 22222221 11112 22221 2233 47899999999864 3343
Q ss_pred HHhccCccccccCCCcEEEEcCCC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.. +.+ ...|..+||+|..
T Consensus 82 ~v---~~~---~~~G~~VIDlS~~ 99 (336)
T PRK05671 82 FA---EKA---RAAGCSVIDLSGA 99 (336)
T ss_pred HH---HHH---HHCCCeEEECchh
Confidence 44 222 3467889999876
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0015 Score=53.33 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=29.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
+|+|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 30 ~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 30 KVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 79999999999999999999996 499999873
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0031 Score=57.69 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=66.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc-chh----HHHHHCCCccc--CCHHHHHhhCCEEEEecCCHH---HH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKC----DELVAHGATVG--GSPAEVIKKCTITIGMLADPA---AA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~----~~l~~~g~~~~--~~~~~~~~~~dvvii~vp~~~---~~ 70 (291)
+++.|+|.|.+|..++..|++.|++|+++|++. +.. +.+.+.|+.+. +..++....+|+||.+...+. .+
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCCCHHH
Confidence 379999999999999999999999999999875 333 23334455432 233345567999999873221 11
Q ss_pred HHHHh-cc---Cc---cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 71 LSVVF-DK---GG---VLEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 71 ~~v~~-~~---~~---l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
...-. +. .. +........+-|.-|++...+.+-+...+...+
T Consensus 86 ~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 86 VQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred HHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 11110 00 00 011122223345455666777776777776654
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.002 Score=54.61 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=56.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++|||- ..+|..++..|.+.|..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 157 ~vvViGrS~iVGkPla~lL~~~~aTVtichs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~--------- 213 (287)
T PRK14173 157 EVVVVGRSNIVGKPLAALLLREDATVTLAHSK--------------TQDLPAVTRRADVLVVAVGRPHLIT--------- 213 (287)
T ss_pred EEEEECCCCccHHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC---------
Confidence 6889987 567999999999999999988643 1357788899999999998864322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 214 ~~~vk~GavVIDVGin 229 (287)
T PRK14173 214 PEMVRPGAVVVDVGIN 229 (287)
T ss_pred HHHcCCCCEEEEccCc
Confidence 2346799999998765
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0044 Score=51.39 Aligned_cols=110 Identities=23% Similarity=0.262 Sum_probs=69.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC-CcEE-EEcCCcchh-----HHHH---HCCCcccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG-FKVT-VWNRTLSKC-----DELV---AHGATVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g-~~V~-~~~r~~~~~-----~~l~---~~g~~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|+|+ |+||..+.+.+.+.. +++. .++|.+... ..+. ..|+.+.+++.....++|++|=.+ .|..
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT-~P~~ 81 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT-TPEA 81 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC-Cchh
Confidence 79999999 999999999998765 5544 457765422 1121 235667777777777899999877 5566
Q ss_pred HHHHHhccCccccccCCC-cEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 70 ALSVVFDKGGVLEQICPG-KGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~-~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
..+.+ +-.. ..+ .+||-++.-.+...+.+.+...+ +..+-+|
T Consensus 82 ~~~~l---~~~~---~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~ 124 (266)
T COG0289 82 TLENL---EFAL---EHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAP 124 (266)
T ss_pred hHHHH---HHHH---HcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEec
Confidence 66665 2222 233 35554444466666666665443 4344444
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0013 Score=56.58 Aligned_cols=88 Identities=14% Similarity=0.209 Sum_probs=59.1
Q ss_pred EEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHC----------CCcccCCHHHHHhhCCEEEEecCCHH----
Q 022834 5 FLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIKKCTITIGMLADPA---- 68 (291)
Q Consensus 5 iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~----------g~~~~~~~~~~~~~~dvvii~vp~~~---- 68 (291)
|||+|.+|..++..|+..+. ++.++|++.++++....+ ...+..+..+.+++||+||++...+.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 69999999999999998775 699999988766543221 23344445577889999999874321
Q ss_pred -----------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 -----------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 -----------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
-++++. +.+.+. .++.+++..||-
T Consensus 81 ~R~dll~~N~~i~~~~~---~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIV---PEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CHHHHHHHHHHHHHHHH---HHHHHh-CCCeEEEEeCCH
Confidence 134444 445544 366667766653
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0018 Score=51.39 Aligned_cols=86 Identities=10% Similarity=0.144 Sum_probs=58.7
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHH-HCCCccc--CC----HHHHHhhCCEEEEecCCHHH-HHH
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVG--GS----PAEVIKKCTITIGMLADPAA-ALS 72 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-~~g~~~~--~~----~~~~~~~~dvvii~vp~~~~-~~~ 72 (291)
++.|||-+ -+|..++..|.+.|..|++++.+.-....-. ......+ .+ ..+.+++||+||.+++++.- +.
T Consensus 64 ~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~- 142 (197)
T cd01079 64 TITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVP- 142 (197)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccC-
Confidence 68999885 5699999999999999999975432210000 0000111 12 56788999999999988653 22
Q ss_pred HHhccCccccccCCCcEEEEcCCC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
...+++|++|||.+..
T Consensus 143 --------~d~ik~GavVIDVGi~ 158 (197)
T cd01079 143 --------TELLKDGAICINFASI 158 (197)
T ss_pred --------HHHcCCCcEEEEcCCC
Confidence 2346799999998866
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0014 Score=56.97 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=44.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCCcch--hHHH----HH------CCCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--CDEL----VA------HGATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~~--~~~l----~~------~g~~~~~~~~~~~~~~dvvi 61 (291)
||+|||+ |.+|..++..|...+. ++.++|++++. ++.. .+ .+.....+..+.+++||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 9999999999997553 59999986542 2211 10 11222224457788999999
Q ss_pred EecC
Q 022834 62 GMLA 65 (291)
Q Consensus 62 i~vp 65 (291)
++-.
T Consensus 81 itAG 84 (324)
T TIGR01758 81 LVGA 84 (324)
T ss_pred EcCC
Confidence 9863
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0051 Score=52.44 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=74.0
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcch-hHHHHHCCCcccCCHHHHHhh--CCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--~dvvii~vp~~~~~~~v~~~~ 77 (291)
||.|+|. |.+|..+-.++...|++ .++..++.+ .+. -.|.+.+.+.+|+.+. .|+.++++|. ..+.+++
T Consensus 8 ~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l--- 80 (286)
T TIGR01019 8 KVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAI--- 80 (286)
T ss_pred cEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHH---
Confidence 6899996 99999999999999998 666655552 111 1388899999998876 7999999966 5566666
Q ss_pred CccccccCCCcEEEEcCCCCHHH-HHHHHHHHHhcCCcEEE
Q 022834 78 GGVLEQICPGKGYIDMSTVDHET-SIKISRAITSKGGHFLE 117 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~-~~~~~~~~~~~~~~~~~ 117 (291)
+++...- - +.++..|.+.++. .+++.+...+.++.++.
T Consensus 81 ~e~~~~G-v-k~avIis~Gf~e~~~~~l~~~a~~~girilG 119 (286)
T TIGR01019 81 FEAIDAG-I-ELIVCITEGIPVHDMLKVKRYMEESGTRLIG 119 (286)
T ss_pred HHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 4444321 1 2333346665544 45666777777776664
|
ATP citrate lyases appear to form an outgroup. |
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0023 Score=54.11 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=56.9
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ -+|..++..|.++|..|+++... +.++.+.+++||+||.+++++.-+.
T Consensus 159 ~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~~~~i~--------- 215 (284)
T PRK14170 159 RAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------------TKDLPQVAKEADILVVATGLAKFVK--------- 215 (284)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC---------
Confidence 78999885 56999999999999999988642 1357788899999999998865322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 216 ~~~vk~GavVIDvGin 231 (284)
T PRK14170 216 KDYIKPGAIVIDVGMD 231 (284)
T ss_pred HHHcCCCCEEEEccCc
Confidence 2346789999998766
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0023 Score=54.49 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=56.6
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++|||- .-+|..++..|.++|..|+++... +.++.+..++||+||.|++++.-+.
T Consensus 160 ~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~--------- 216 (297)
T PRK14186 160 KAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPNLIG--------- 216 (297)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC---------
Confidence 6899987 457999999999999999988642 1367788899999999998865322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 217 ~~~ik~gavVIDvGin 232 (297)
T PRK14186 217 AEMVKPGAVVVDVGIH 232 (297)
T ss_pred HHHcCCCCEEEEeccc
Confidence 2346799999998765
|
|
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0023 Score=54.13 Aligned_cols=94 Identities=24% Similarity=0.259 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCcccccccccccccCCCCCCcccccHHHH--
Q 022834 166 GAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD-- 239 (291)
Q Consensus 166 a~~~k~~~n~~~~~~~~~~~E~~~~~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d-- 239 (291)
+..+|+++|.+..+++++++|+..+++. .|++.+++.++.. .+...|++++-....+...+. .|.++-....|
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~-~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDE-TGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-T-TSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccC-ccCcchhhhCCcc
Confidence 4679999999999999999999999995 6888887777765 455566666554433333331 11111111122
Q ss_pred -----HHHHHHHHhhcCCCchHHHHH
Q 022834 240 -----MRLALALGDENAVSMPIAAAA 260 (291)
Q Consensus 240 -----~~~~~~~a~~~g~~~p~~~~~ 260 (291)
-....+.|-+.|+|+|++.++
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a 105 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAA 105 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHH
Confidence 366788899999999997763
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0039 Score=54.66 Aligned_cols=111 Identities=19% Similarity=0.239 Sum_probs=64.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCC----------cccCCHHHHHh--hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGA----------TVGGSPAEVIK--KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~----------~~~~~~~~~~~--~~dvvii~vp~~~ 68 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.-....+..+.. .-+....+.++ +.++-+.+.....
T Consensus 26 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~ 105 (339)
T PRK07688 26 HVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDV 105 (339)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 79999999999999999999997 89999987544333332211 11111112222 3455444442211
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEccc
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (291)
..+.+ .+.+..-++||+++.. +.+...+.+...+.++.++.+..
T Consensus 106 ~~~~~-------~~~~~~~DlVid~~Dn-~~~r~~ln~~~~~~~iP~i~~~~ 149 (339)
T PRK07688 106 TAEEL-------EELVTGVDLIIDATDN-FETRFIVNDAAQKYGIPWIYGAC 149 (339)
T ss_pred CHHHH-------HHHHcCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEee
Confidence 11111 1123344788887554 45555666666677787776543
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0026 Score=53.80 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=57.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||- .-+|..++..|.++|..|++++.. +.++.+..++||+||.+++++.-+.
T Consensus 161 ~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~--------- 217 (284)
T PRK14177 161 NAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIK--------- 217 (284)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccC---------
Confidence 6889987 567999999999999999988743 2366788899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 218 ~~~ik~gavVIDvGin 233 (284)
T PRK14177 218 ADWISEGAVLLDAGYN 233 (284)
T ss_pred HHHcCCCCEEEEecCc
Confidence 2346799999998875
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=57.94 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=55.0
Q ss_pred CeEEEEec-ChhhHHHHHHHHh-CCCc---EEEEcC--CcchhHHHHHCCCcccC-CHHHHHhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLR-NGFK---VTVWNR--TLSKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~-~g~~---V~~~~r--~~~~~~~l~~~g~~~~~-~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
|||+|||+ |.+|..+.+.|.+ ..++ +.++.. +..+.-.+......+.. +.++ ..++|++|+|+|.. ...+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s~~ 83 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VSRQ 83 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HHHH
Confidence 58999998 9999999999995 6677 544432 21111112212222222 3333 47899999999774 3444
Q ss_pred HHhccCccccccCCCcEEEEcCCC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+. .. ....|..|||+|..
T Consensus 84 ~~---~~---~~~~G~~VID~Ss~ 101 (347)
T PRK06728 84 FV---NQ---AVSSGAIVIDNTSE 101 (347)
T ss_pred HH---HH---HHHCCCEEEECchh
Confidence 44 22 23467899998865
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0052 Score=50.89 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=68.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc----C-CHHHH----Hh--hCCEEEEecCCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG----G-SPAEV----IK--KCTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~----~-~~~~~----~~--~~dvvii~vp~~~~ 69 (291)
||.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+-.... . ...++ ++ ++|+.+.+.+....
T Consensus 29 ~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~~ 108 (231)
T PRK08328 29 KVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLS 108 (231)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence 79999999999999999999995 69999887655544443211100 0 11111 11 46777766532211
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
-+. +...+++-++|+++.-. +.+...+.+...+.++.++.+.+.|
T Consensus 109 ~~~-------~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 109 EEN-------IDEVLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred HHH-------HHHHHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 111 11223345788887655 4555556666677788888766443
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00094 Score=48.13 Aligned_cols=84 Identities=12% Similarity=0.084 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHhCCCcEEEEcCCcchhHHHH---HCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCC
Q 022834 10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELV---AHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICP 86 (291)
Q Consensus 10 ~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~---~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~ 86 (291)
+-+..++..|.+.|.+|.+||+.-....... ..+....+++.+.++++|+||++++.+ +...+-. +++...+.+
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~--~~~~~~~~~ 93 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDW--EEIAKLMRK 93 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGH--HHHHHHSCS
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCH--HHHHHhcCC
Confidence 3467789999999999999998765544433 247788889999999999999999654 3333211 334444557
Q ss_pred CcEEEEcCCC
Q 022834 87 GKGYIDMSTV 96 (291)
Q Consensus 87 ~~~vv~~s~~ 96 (291)
+.+|+|+-+.
T Consensus 94 ~~~iiD~~~~ 103 (106)
T PF03720_consen 94 PPVIIDGRNI 103 (106)
T ss_dssp SEEEEESSST
T ss_pred CCEEEECccc
Confidence 8899997654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0026 Score=53.83 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=56.4
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ -+|..++..|.++|..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 158 ~vvViGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~p~~i~--------- 214 (282)
T PRK14169 158 RVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK--------------TRNLKQLTKEADILVVAVGVPHFIG--------- 214 (282)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEccCCcCccC---------
Confidence 68899874 57999999999999999988542 1357788899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 215 ~~~vk~GavVIDvGin 230 (282)
T PRK14169 215 ADAVKPGAVVIDVGIS 230 (282)
T ss_pred HHHcCCCcEEEEeecc
Confidence 2346799999998764
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.002 Score=48.58 Aligned_cols=113 Identities=18% Similarity=0.250 Sum_probs=63.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~ 69 (291)
.||.|+|+|.+|+.++..|+..|. +++++|.+.=....+..+ |..-+....+.++ ++++=+.+.+....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~ 82 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID 82 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence 489999999999999999999997 699998764333222221 2211112222222 23444555544331
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (291)
-+ .. .++. ..-++|++++.. ......+.+...+.+..++.+...
T Consensus 83 ~~-~~---~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~ 126 (135)
T PF00899_consen 83 EE-NI---EELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVN 126 (135)
T ss_dssp HH-HH---HHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred cc-cc---cccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEee
Confidence 11 11 1222 233577765544 555566777777778888876644
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0027 Score=53.65 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=56.6
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++|||-+ -+|..++..|.+.|..|+++.... .++.+..++||++|.+++++.-+..
T Consensus 159 ~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~~-------- 216 (282)
T PRK14166 159 DAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNLLRS-------- 216 (282)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCccCH--------
Confidence 68899874 579999999999999999887531 3577888999999999988653322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..+++|.+|||.+..
T Consensus 217 -~~vk~GavVIDvGin 231 (282)
T PRK14166 217 -DMVKEGVIVVDVGIN 231 (282)
T ss_pred -HHcCCCCEEEEeccc
Confidence 246799999998755
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0027 Score=53.57 Aligned_cols=72 Identities=29% Similarity=0.322 Sum_probs=56.7
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||- .-+|..++..|.++|..|++++.. +.++.+..++||+||.+++++.-+.
T Consensus 160 ~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~--------- 216 (278)
T PRK14172 160 EVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFID--------- 216 (278)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC---------
Confidence 6899987 567999999999999999998743 2367788899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 217 ~~~ik~gavVIDvGin 232 (278)
T PRK14172 217 EEYVKEGAIVIDVGTS 232 (278)
T ss_pred HHHcCCCcEEEEeecc
Confidence 2346799999998654
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0026 Score=53.77 Aligned_cols=72 Identities=22% Similarity=0.227 Sum_probs=56.4
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+|.|||- .-+|..++..|.++|..|+++.... .++.+..++||+||.+++++.-+..
T Consensus 160 ~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~i~~-------- 217 (282)
T PRK14180 160 YAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNFITA-------- 217 (282)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCcCCH--------
Confidence 6889987 4579999999999999999886531 3666778999999999988653322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..+++|.+|||.+..
T Consensus 218 -~~vk~gavVIDvGin 232 (282)
T PRK14180 218 -DMVKEGAVVIDVGIN 232 (282)
T ss_pred -HHcCCCcEEEEeccc
Confidence 346799999998754
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0059 Score=52.42 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=33.5
Q ss_pred eEEEEecChhhHHHHHHHHh-CCCcEE-EEcCCcchhHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g~~V~-~~~r~~~~~~~l~~ 41 (291)
|||+||+|.||+.++...++ .|.+|. +.||+.+.+++..+
T Consensus 19 RVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~ 60 (438)
T COG4091 19 RVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYD 60 (438)
T ss_pred EEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHH
Confidence 79999999999999999886 688866 55898888776554
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0019 Score=46.28 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=46.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-CCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-GSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
+|.|||.|.+|..=+..|.+.|.+|+++++.. ...+..++.. ...++.++++++|+.|++++..-+.+.
T Consensus 9 ~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~----~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~i~ 78 (103)
T PF13241_consen 9 RVLVVGGGPVAARKARLLLEAGAKVTVISPEI----EFSEGLIQLIRREFEEDLDGADLVFAATDDPELNEAIY 78 (103)
T ss_dssp EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE----HHHHTSCEEEESS-GGGCTTESEEEE-SS-HHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEECCch----hhhhhHHHHHhhhHHHHHhhheEEEecCCCHHHHHHHH
Confidence 68999999999999999999999999999875 1112232221 122344677899998886644333333
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0018 Score=57.03 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=53.9
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC-CcEEEE-cCCcchhHHHHHC-------CC-------cccCCHHHHHhhCCEEEEe
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NRTLSKCDELVAH-------GA-------TVGGSPAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g-~~V~~~-~r~~~~~~~l~~~-------g~-------~~~~~~~~~~~~~dvvii~ 63 (291)
|||+|+|+ |.||..+.+.|.++. +++... ++.++.-+.+.+. +. .+.+...+...++|+||+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 79999996 999999999998866 576655 4433222222110 01 1111122344789999999
Q ss_pred cCCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 64 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+|...+. ++. +.+ ...|..+||+|..
T Consensus 81 ~p~~~s~-~~~---~~~---~~~G~~VIDlsg~ 106 (341)
T TIGR00978 81 LPSEVAE-EVE---PKL---AEAGKPVFSNASN 106 (341)
T ss_pred CCHHHHH-HHH---HHH---HHCCCEEEECChh
Confidence 9876433 333 222 2357778888765
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0025 Score=54.65 Aligned_cols=77 Identities=25% Similarity=0.219 Sum_probs=51.5
Q ss_pred eEEEEec-ChhhHHHHHHHHhCC-CcEEEE-cCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g-~~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
||+|+|+ |..|..|.+.|..+. .++... .+. +. . ..+.+++++++|++|+|+|... ..+.. +
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~--~~--------~-~~~~~~~~~~~D~vFlalp~~~-s~~~~---~ 67 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR--RK--------D-AAERAKLLNAADVAILCLPDDA-AREAV---S 67 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc--cc--------C-cCCHhHhhcCCCEEEECCCHHH-HHHHH---H
Confidence 8999987 999999999999874 243322 221 11 1 1245566678999999998754 33443 2
Q ss_pred ccccccCCCcEEEEcCCC
Q 022834 79 GVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~ 96 (291)
.+ ...+..|||+|..
T Consensus 68 ~~---~~~g~~VIDlSad 82 (310)
T TIGR01851 68 LV---DNPNTCIIDASTA 82 (310)
T ss_pred HH---HhCCCEEEECChH
Confidence 22 2467889999865
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.014 Score=53.41 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=70.0
Q ss_pred eEEEEecChhhHH-HHHHHHhCCCcEEEEcCCcc-hhHHHHHCCCcccC-CHHHHHhhCCEEEEec--C-CHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGML--A-DPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~-la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~~dvvii~v--p-~~~~~~~v~~ 75 (291)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.+.. ...+.+.++|+||+.- | +...+.....
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 5889999999998 99999999999999997543 33446666776643 2234456789888753 2 2222332221
Q ss_pred c------cCccc-cccCC-CcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 76 D------KGGVL-EQICP-GKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 76 ~------~~~l~-~~l~~-~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
. ..++. ...++ ..+-|.-|++...+..-+...+...|.
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 0 00121 12222 234455666777777777788877764
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0032 Score=53.65 Aligned_cols=72 Identities=25% Similarity=0.359 Sum_probs=56.9
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ -+|..++..|.++|..|+++... +.++.+.++++|+||.+++++.-+.
T Consensus 169 ~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~i~--------- 225 (299)
T PLN02516 169 KAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMMIK--------- 225 (299)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC---------
Confidence 78999885 56999999999999999998643 2367788899999999998853222
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 226 ~~~vk~gavVIDvGin 241 (299)
T PLN02516 226 GDWIKPGAAVIDVGTN 241 (299)
T ss_pred HHHcCCCCEEEEeecc
Confidence 2347799999998765
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0033 Score=53.43 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=56.5
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||- .-+|..++..|.++|..|++++.. +.++.+..++||+||.+++++.-+.
T Consensus 162 ~vvViGrS~iVGkPla~lL~~~~aTVt~chs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~--------- 218 (294)
T PRK14187 162 DAVVIGRSNIVGKPMACLLLGENCTVTTVHSA--------------TRDLADYCSKADILVAAVGIPNFVK--------- 218 (294)
T ss_pred EEEEECCCccchHHHHHHHhhCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC---------
Confidence 6889987 456999999999999999988753 1356788899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||....
T Consensus 219 ~~~ik~gaiVIDVGin 234 (294)
T PRK14187 219 YSWIKKGAIVIDVGIN 234 (294)
T ss_pred HHHcCCCCEEEEeccc
Confidence 2346789999998754
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0034 Score=53.22 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=56.3
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ -+|..++..|.+.|..|+++... +.++.+..++||+||.+++++.-+..
T Consensus 161 ~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~~i~~-------- 218 (288)
T PRK14171 161 NVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPLKLTA-------- 218 (288)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCCccCH--------
Confidence 68899874 57999999999999999988642 13677888999999999988653322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
.++++|.+|||.+..
T Consensus 219 -~~vk~GavVIDvGin 233 (288)
T PRK14171 219 -EYFNPESIVIDVGIN 233 (288)
T ss_pred -HHcCCCCEEEEeecc
Confidence 346799999998754
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0037 Score=52.91 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=56.3
Q ss_pred eEEEEec-ChhhHHHHHHHHh--CCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 2 EVGFLGL-GIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
++.|||- ..+|..++..|.+ ++..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 160 ~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~i~------- 218 (284)
T PRK14193 160 HVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHLVT------- 218 (284)
T ss_pred EEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCccC-------
Confidence 6889987 5679999999988 67889888653 2467788899999999998864322
Q ss_pred ccccccCCCcEEEEcCCC
Q 022834 79 GVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 219 --~~~ik~GavVIDvGin 234 (284)
T PRK14193 219 --ADMVKPGAAVLDVGVS 234 (284)
T ss_pred --HHHcCCCCEEEEcccc
Confidence 2347799999998765
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0029 Score=52.23 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=78.6
Q ss_pred EEEEecChhhHHHHHHHHhCC---CcEEEEcCCcchhHHHHHC----------CCcccCCHHHHHhhCCEEEEecCCHHH
Q 022834 3 VGFLGLGIMGKAISMNLLRNG---FKVTVWNRTLSKCDELVAH----------GATVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g---~~V~~~~r~~~~~~~l~~~----------g~~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
..|+|.|..+..+.....+.- .+|.+|+|+++.++.+++. .....++.++++..+|+|+.|++.
T Consensus 141 L~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls--- 217 (333)
T KOG3007|consen 141 LTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS--- 217 (333)
T ss_pred EEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc---
Confidence 568999999998887766532 4799999999998887762 134467788889999999999954
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.+.++| ..++++|+.|=......|..- +....+.+.+..|+|..
T Consensus 218 tePilf-----gewlkpgthIdlVGsf~p~mh-EcDdelIq~a~vfVDsr 261 (333)
T KOG3007|consen 218 TEPILF-----GEWLKPGTHIDLVGSFKPVMH-ECDDELIQSACVFVDSR 261 (333)
T ss_pred CCceee-----eeeecCCceEeeeccCCchHH-HHhHHHhhhheEEEecc
Confidence 566664 346778887665666666554 44455556677888764
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=55.90 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=40.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~ 63 (291)
||.|||+|.||...++.|.++|. +|++.+|+.+.. .+.+.. ...-+...++|+||.|
T Consensus 176 ~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~----~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 176 SLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTVV----REELSFQDPYDVIFFG 233 (338)
T ss_pred EEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhhh----hhhhhcccCCCEEEEc
Confidence 78999999999999999999995 699999987531 111100 0111234578999987
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.015 Score=47.21 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=49.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc-chhHHHHHCCC-cccC---CHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHGA-TVGG---SPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l~~~g~-~~~~---~~~~~~~~~dvvii~vp~~~ 68 (291)
+++.|||.|.+|..=+..|.+.|.+|+++.... +....+.+.+- .... +.++ ..++++||.|++++.
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH
Confidence 379999999999999999999999999997655 55555655532 2222 2333 345999999996644
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=54.43 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=70.5
Q ss_pred CeEEEEecChhhHH-HHHHHHhCCCcEEEEcCCcc-hhHHHHHCCCcccC-CHHHHHhhCCEEEEec--C-CHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGML--A-DPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~~dvvii~v--p-~~~~~~~v~ 74 (291)
++|.|||.|..|.+ +++.|.+.|++|+++|.++. ..+.+.+.|+.+.. ...+.+.++|+||+.- | +...+....
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 87 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR 87 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence 47999999999999 89999999999999997543 33446666776532 2234456789888763 2 212232221
Q ss_pred h------ccCcccccc-CC-CcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 75 F------DKGGVLEQI-CP-GKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 75 ~------~~~~l~~~l-~~-~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
. +..++...+ .+ ..+-|.-|++...+..-+.+.+...|.
T Consensus 88 ~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 88 ELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred HCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 1 001122122 22 234565666777777777788877663
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00086 Score=52.33 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=47.1
Q ss_pred eEEEEecChhhHHHHHH-HH-hCCCcEE-EEcCCcchhHHHHHCCCcc--cCCHHHHHh--hCCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMN-LL-RNGFKVT-VWNRTLSKCDELVAHGATV--GGSPAEVIK--KCTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~-l~-~~g~~V~-~~~r~~~~~~~l~~~g~~~--~~~~~~~~~--~~dvvii~vp~~~~~~~v~ 74 (291)
++.|||+|++|.+++.. +. +.|++++ ++|.+++..-.-.. ++.+ .++++..++ +.|+.++|||. .+..++.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~-~v~V~~~d~le~~v~~~dv~iaiLtVPa-~~AQ~va 163 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIG-DVPVYDLDDLEKFVKKNDVEIAILTVPA-EHAQEVA 163 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccC-CeeeechHHHHHHHHhcCccEEEEEccH-HHHHHHH
Confidence 68999999999999987 33 4667654 77998876543222 2333 334555555 67889999976 4444444
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0063 Score=51.67 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=66.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
+|.|||+|.+|+.++..|+.+|. +++++|.+.=....+..+ |..-+....+.++ +.++=|.+.+....
T Consensus 29 ~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~- 107 (287)
T PRK08223 29 RVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIG- 107 (287)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccC-
Confidence 79999999999999999999995 688998764333333322 2221222222222 34444444432111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
+ +.....+..-++|||.+... ..+...+.+.....++.++.+.+.|
T Consensus 108 ~------~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 108 K------ENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred c------cCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 1 11112233447888877553 3455566666777788888765443
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0061 Score=50.29 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=60.9
Q ss_pred EEEEcCCcchhHHHHHC-CCcccCCHHHHH-hhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCC---CHHH
Q 022834 26 VTVWNRTLSKCDELVAH-GATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV---DHET 100 (291)
Q Consensus 26 V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~---~~~~ 100 (291)
+.++|+++++++.+.+. |...+++.++++ .+.|+|++|+|...+.+-.. ..+..|+.++-.+.+ ....
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~-------~aL~aGkhVl~~s~gAlad~e~ 77 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAE-------KILKNGKDLLIMSVGALADREL 77 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHH-------HHHHCCCCEEEECCcccCCHHH
Confidence 45789999999888764 678888999986 57999999998877655444 334455555545654 4466
Q ss_pred HHHHHHHHHhcCCcEEE
Q 022834 101 SIKISRAITSKGGHFLE 117 (291)
Q Consensus 101 ~~~~~~~~~~~~~~~~~ 117 (291)
.+++.+...+.|..+.-
T Consensus 78 ~~~l~~aA~~~g~~l~i 94 (229)
T TIGR03855 78 RERLREVARSSGRKVYI 94 (229)
T ss_pred HHHHHHHHHhcCCEEEE
Confidence 77787777777776553
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0036 Score=53.06 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=56.2
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||- .-+|..++..|.++|..|++++.. +.++.+.+++||+||.+++++.-+.
T Consensus 160 ~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~i~--------- 216 (284)
T PRK14190 160 HVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKLIT--------- 216 (284)
T ss_pred EEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCcCC---------
Confidence 6889987 567999999999999999988642 1367788899999999997755222
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 217 ~~~ik~gavVIDvGi~ 232 (284)
T PRK14190 217 ADMVKEGAVVIDVGVN 232 (284)
T ss_pred HHHcCCCCEEEEeecc
Confidence 2346799999998755
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0013 Score=57.70 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=54.5
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcE---EEEcCCcchhHHHHHCCC--cccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKV---TVWNRTLSKCDELVAHGA--TVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V---~~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
||+||| .|.+|..+.+.|.+++|++ .++.+....-+.+.-.|. .+.+...+.+.++|++|+|+|... ..+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~-s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSV-SKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHH-HHHHH-
Confidence 689999 5999999999999988863 344443332222222221 222111234478999999997743 44444
Q ss_pred ccCccccccCCCcEEEEcCCC
Q 022834 76 DKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+.+ +..|..|||+|..
T Consensus 79 --~~~---~~~G~~VID~ss~ 94 (339)
T TIGR01296 79 --PKA---AKCGAIVIDNTSA 94 (339)
T ss_pred --HHH---HHCCCEEEECCHH
Confidence 222 3456789998864
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0096 Score=50.91 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=71.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcch-hHHHHHCCCcccCCHHHHHhh--CCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--~dvvii~vp~~~~~~~v~~~~ 77 (291)
||.|.|. |.+|..+..+|.+.|++ .+|-.+|.. .+. -.|.+.+.+.+|+.+. .|+.++++|. ..+.+++
T Consensus 10 ~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~--v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l--- 82 (291)
T PRK05678 10 KVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAI--- 82 (291)
T ss_pred eEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCe--EeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHH---
Confidence 6889998 88999999999998887 554333331 111 1388899999999886 8999999966 5566666
Q ss_pred CccccccCCCcEEEEcCCCCHH-HHHHHHHHHHhcCCcEEEc
Q 022834 78 GGVLEQICPGKGYIDMSTVDHE-TSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~-~~~~~~~~~~~~~~~~~~~ 118 (291)
+++...- - +.++..|.+.+. ..+++.+...+.|+.++..
T Consensus 83 ~e~~~~g-v-k~avI~s~Gf~~~~~~~l~~~a~~~girvlGP 122 (291)
T PRK05678 83 LEAIDAG-I-DLIVCITEGIPVLDMLEVKAYLERKKTRLIGP 122 (291)
T ss_pred HHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEECC
Confidence 4554321 1 233333555442 2346777777777777643
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0034 Score=52.66 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=57.4
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+. +|..|+..|.++++.|+++.... .+..+..+++|+++.++..+.-++
T Consensus 158 ~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~~i~--------- 214 (283)
T COG0190 158 NVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPHFIK--------- 214 (283)
T ss_pred EEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCccccc---------
Confidence 688999876 59999999999999999997541 367788899999999997754322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
.+++++|.+++|....
T Consensus 215 ~d~vk~gavVIDVGin 230 (283)
T COG0190 215 ADMVKPGAVVIDVGIN 230 (283)
T ss_pred cccccCCCEEEecCCc
Confidence 3457789999998765
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0028 Score=54.70 Aligned_cols=120 Identities=22% Similarity=0.283 Sum_probs=67.8
Q ss_pred CeEEEEecChhhHHHHHHHHhC--------CCcEE---EEcCCcchhHHHHHCC-CcccCCH-----HHHH--hhCCEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--------GFKVT---VWNRTLSKCDELVAHG-ATVGGSP-----AEVI--KKCTITI 61 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--------g~~V~---~~~r~~~~~~~l~~~g-~~~~~~~-----~~~~--~~~dvvi 61 (291)
|||+|+|+|.+|+.+++.|.++ |.++. +.+|+......+.-.+ ..+..+. .+.+ .+.|+++
T Consensus 4 v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvv 83 (333)
T COG0460 4 VKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDVVV 83 (333)
T ss_pred EEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCEEE
Confidence 4899999999999999999875 33433 3355443332111011 1222232 3433 3567888
Q ss_pred EecCC-HHHHHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEE-EcccCCCh
Q 022834 62 GMLAD-PAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFL-EAPVSGSK 124 (291)
Q Consensus 62 i~vp~-~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 124 (291)
-+++. ...-++ + +.+...+..|+.||..... ......++.+...+.++.+. .+.+.|+.
T Consensus 84 e~~~~d~~~~~~-~---~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGi 145 (333)
T COG0460 84 ELVGGDVEPAEP-A---DLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGI 145 (333)
T ss_pred ecCcccCCchhh-H---HHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCc
Confidence 88865 233332 3 3455677788888832222 11223456666666676655 66665553
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.002 Score=55.94 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=44.4
Q ss_pred eEEEEec-ChhhHHHHHHHHhCC--CcEEEEcCCcchhH--HHHHC--CCcc--cCC---HHHHHhhCCEEEEecCC
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSKCD--ELVAH--GATV--GGS---PAEVIKKCTITIGMLAD 66 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~~--~l~~~--g~~~--~~~---~~~~~~~~dvvii~vp~ 66 (291)
||+|||+ |.+|..++..|+..+ .++.++|++....+ .+.+. ...+ ..+ ..+.++++|+||++...
T Consensus 10 KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 10 KVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 8999999 999999999999655 57999998432221 12211 1122 112 25778899999998743
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0043 Score=52.41 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=56.0
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||- .-+|..++..|.+++..|+++... +.++.+..++||++|.+++++.-+.
T Consensus 159 ~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~i~--------- 215 (282)
T PRK14182 159 RALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAELVK--------- 215 (282)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC---------
Confidence 6889987 456999999999998999988643 2356778899999999998754322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 216 ~~~ik~gaiVIDvGin 231 (282)
T PRK14182 216 GAWVKEGAVVIDVGMN 231 (282)
T ss_pred HHHcCCCCEEEEeece
Confidence 2346799999998755
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0022 Score=54.38 Aligned_cols=110 Identities=20% Similarity=0.155 Sum_probs=67.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHH-HHHHhccC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAA-LSVVFDKG 78 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~-~~v~~~~~ 78 (291)
++.|+|+|..+.+++..|.+.|. +|++++|++++++.+.+. +.....+. ....+|+||-|+|-...- .+.- ..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~Gm~~~~~~~--~~ 199 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIGMAGGPEAD--KL 199 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccccCCCCccc--cC
Confidence 58899999999999999999886 599999999999888764 22111111 124589999999743210 0000 00
Q ss_pred cc-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 79 GV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 79 ~l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
.+ ...++++.+++|+.-....+ .+.+...+.|+..++
T Consensus 200 pi~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 200 AFPEAEIDAASVVFDVVALPAET--PLIRYARARGKTVIT 237 (272)
T ss_pred CCCHHHcCCCCEEEEeecCCccC--HHHHHHHHCcCeEeC
Confidence 11 12355677888876543322 233344555665553
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.006 Score=49.28 Aligned_cols=115 Identities=18% Similarity=0.294 Sum_probs=64.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC----------CCcccCCHHHHHh--hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIK--KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~----------g~~~~~~~~~~~~--~~dvvii~vp~~~ 68 (291)
||.|||+|.+|+.++.+|+..|. +++++|.+.-....+..+ |...+....+.++ +.++-+.+.....
T Consensus 21 ~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~~ 100 (198)
T cd01485 21 KVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEEDS 100 (198)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 79999999999999999999995 599998764322222211 2111111112121 3566555552211
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
.+.. +.....+++-++|+++. ........+.+...+.++.++.+...|
T Consensus 101 --~~~~---~~~~~~~~~~dvVi~~~-d~~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 101 --LSND---SNIEEYLQKFTLVIATE-ENYERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred --ccch---hhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 0000 11111233345777664 346666677777778888887665433
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0073 Score=50.29 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=67.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+ |..-+....+.++ +.++-+.+.+....-
T Consensus 26 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~~ 105 (240)
T TIGR02355 26 RVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLDD 105 (240)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCCH
Confidence 79999999999999999999995 688998865443333322 2111111222222 356666665322111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
+. +...+..-++||+++.. +.....+.+...+.++.++.+...|
T Consensus 106 ~~-------~~~~~~~~DlVvd~~D~-~~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 106 AE-------LAALIAEHDIVVDCTDN-VEVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred HH-------HHHHhhcCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11223345688876544 5566667777777888888765443
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.017 Score=52.67 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=69.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch-hH---H-HH-HCCCcccC-CHHHHHhhCCEEEEec--C-CHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CD---E-LV-AHGATVGG-SPAEVIKKCTITIGML--A-DPAAAL 71 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~---~-l~-~~g~~~~~-~~~~~~~~~dvvii~v--p-~~~~~~ 71 (291)
||.|||.|..|.++++.|.+.|++|+++|..+.. .. . +. ..|+.+.. ...+.+.++|+||..- | +...+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 6899999999999999999999999999975432 21 1 22 24665432 1234456789887764 2 212222
Q ss_pred HHHh-c-----cCccc-cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 72 SVVF-D-----KGGVL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 72 ~v~~-~-----~~~l~-~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
.... + ..++. ...+...+-|.-|++...+..-+...+...+..+.
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~ 132 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAF 132 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeE
Confidence 2210 0 00111 12222344555666777777777788877766544
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0028 Score=55.04 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=48.6
Q ss_pred EEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHH-------------------CCCcccCCHHHHHhhCCEEE
Q 022834 3 VGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~~dvvi 61 (291)
|||+|+|.+|..+++.+.+. +.+|. +.|.+++....+.. .++.+..+++++..++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 69999999999999998753 45655 45766664444433 12344557888888999999
Q ss_pred EecCCHHH
Q 022834 62 GMLADPAA 69 (291)
Q Consensus 62 i~vp~~~~ 69 (291)
.|+|...+
T Consensus 81 e~Tp~~~~ 88 (333)
T TIGR01546 81 DATPGGIG 88 (333)
T ss_pred ECCCCCCC
Confidence 99987543
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0018 Score=56.50 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=54.3
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC---cEEEEcCCcchhHH--HHHCCCcccCCHHHH-HhhCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF---KVTVWNRTLSKCDE--LVAHGATVGGSPAEV-IKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~---~V~~~~r~~~~~~~--l~~~g~~~~~~~~~~-~~~~dvvii~vp~~~~~~~v 73 (291)
|||+|||+ |.+|..|.+.|.++.| ++..+......-+. +......+. +.++. ..++|++|+|+|.. ...++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~-~s~~~ 82 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGRE-ASAAY 82 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHH-HHHHH
Confidence 58999998 9999999999998655 45555322111111 111122222 33333 26799999999775 33444
Q ss_pred HhccCccccccCCCcEEEEcCCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. +.+ ...|..|||+|..
T Consensus 83 ~---~~~---~~~g~~VIDlS~~ 99 (336)
T PRK08040 83 A---EEA---TNAGCLVIDSSGL 99 (336)
T ss_pred H---HHH---HHCCCEEEECChH
Confidence 4 222 3468899999865
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0097 Score=49.23 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=63.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|+|+|.+|+.++..|+..|. +++++|.+.=....+..+ |...+....+.++ +.++-+.+.+.....
T Consensus 23 ~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~ 102 (228)
T cd00757 23 RVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDA 102 (228)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecceeCH
Confidence 79999999999999999999996 688998765333333222 2111111122221 234444444321111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
+. + ...+..-++||++. ..+.....+.+...+.++.++.+.+.|
T Consensus 103 ~~-~------~~~~~~~DvVi~~~-d~~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 103 EN-A------EELIAGYDLVLDCT-DNFATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred HH-H------HHHHhCCCEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 1 11222345666654 355555666777777788888765443
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0061 Score=51.66 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=55.8
Q ss_pred eEEEEecC-hhhHHHHHHHHhC----CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++.|||-+ -+|..++..|.++ +..|+++... +.++.+.+++||+||.+++++.-+.
T Consensus 155 ~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------------T~~l~~~~~~ADIvV~AvG~p~~i~----- 215 (287)
T PRK14181 155 HVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------------SENLTEILKTADIIIAAIGVPLFIK----- 215 (287)
T ss_pred EEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC-----
Confidence 68899875 5799999999988 6788887642 1367788899999999998864322
Q ss_pred cCccccccCCCcEEEEcCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 216 ----~~~ik~GavVIDvGin 231 (287)
T PRK14181 216 ----EEMIAEKAVIVDVGTS 231 (287)
T ss_pred ----HHHcCCCCEEEEeccc
Confidence 2347799999998755
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0055 Score=53.34 Aligned_cols=72 Identities=22% Similarity=0.332 Sum_probs=56.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||- .-+|..++..|.+++..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 233 ~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------------T~nl~~~~r~ADIVIsAvGkp~~i~--------- 289 (364)
T PLN02616 233 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITREADIIISAVGQPNMVR--------- 289 (364)
T ss_pred EEEEECCCccccHHHHHHHHHCCCeEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCcCC---------
Confidence 6888987 557999999999999999988643 2467788899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||....
T Consensus 290 ~d~vK~GAvVIDVGIn 305 (364)
T PLN02616 290 GSWIKPGAVVIDVGIN 305 (364)
T ss_pred HHHcCCCCEEEecccc
Confidence 2346799999998755
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0057 Score=52.98 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=56.1
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ -+|..++..|.++|..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 216 ~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~--------------T~nl~~~~~~ADIvIsAvGkp~~v~--------- 272 (345)
T PLN02897 216 NAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF--------------TKDPEQITRKADIVIAAAGIPNLVR--------- 272 (345)
T ss_pred EEEEECCCccccHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHHhhCCEEEEccCCcCccC---------
Confidence 68899874 56999999999999999988642 1356788899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 273 ~d~vk~GavVIDVGin 288 (345)
T PLN02897 273 GSWLKPGAVVIDVGTT 288 (345)
T ss_pred HHHcCCCCEEEEcccc
Confidence 2346799999998765
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.02 Score=52.45 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=71.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc--hhHHHHH--CCCcccC--CHHHHHhhCCEEEEec--C-CHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVA--HGATVGG--SPAEVIKKCTITIGML--A-DPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~~dvvii~v--p-~~~~~~~ 72 (291)
.|.|+|.|..|.++++.|.+.|++|+++|..+. ..+.+.+ .|+.+.. ...+.+.++|+||+.- | +...+..
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~~ 87 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALRA 87 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHHH
Confidence 488999999999999999999999999997543 2234554 2665532 2234456789887653 2 1122222
Q ss_pred HHh-cc---C--cccc-ccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCC
Q 022834 73 VVF-DK---G--GVLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (291)
Q Consensus 73 v~~-~~---~--~l~~-~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
... +. . ++.. ..+...+-|.-|++...+..-+...+...|..+......|.
T Consensus 88 a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~ 145 (448)
T PRK03803 88 AAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGT 145 (448)
T ss_pred HHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCH
Confidence 210 00 0 1211 12222344555666777777778888777665543333333
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0076 Score=53.26 Aligned_cols=88 Identities=22% Similarity=0.246 Sum_probs=59.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHH-CCCcccCCH-H--------HHH--hhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA-HGATVGGSP-A--------EVI--KKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~-~g~~~~~~~-~--------~~~--~~~dvvii~vp~~~ 68 (291)
++.|+|+|.+|...+..+...|. +|++.|+++++++..++ .+.....+. + +.. ..+|++|.|+..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 58899999999999887777884 67788999999988877 454432222 1 111 23899999998665
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.+.+.+ ..++++..++..+..
T Consensus 251 ~~~~ai-------~~~r~gG~v~~vGv~ 271 (350)
T COG1063 251 ALDQAL-------EALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHHH-------HHhcCCCEEEEEecc
Confidence 555554 344555555555544
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0033 Score=53.74 Aligned_cols=65 Identities=11% Similarity=-0.009 Sum_probs=44.9
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc----cCCHHHHH------hh-CCEEEEecCC
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GGSPAEVI------KK-CTITIGMLAD 66 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~----~~~~~~~~------~~-~dvvii~vp~ 66 (291)
+|.|+|+ |.+|..++..|.+.|++|++..|++++........+.. .++..+++ +. +|.++++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 5889987 99999999999999999999999987543210011111 12333444 34 8999988764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.014 Score=48.80 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=64.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||+|||+|.+|+.++..|+..|. +++++|.+.-....+..+ |...+....+.++ +.++-+.+.+....
T Consensus 34 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~- 112 (245)
T PRK05690 34 RVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLD- 112 (245)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCC-
Confidence 79999999999999999999995 799998765443334322 2222222222222 34555555532111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEccc
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (291)
++ .+...++.-++||+++. .+.....+.+...+.+..++.+.+
T Consensus 113 ~~------~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip~v~~~~ 155 (245)
T PRK05690 113 DD------ELAALIAGHDLVLDCTD-NVATRNQLNRACFAAKKPLVSGAA 155 (245)
T ss_pred HH------HHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCCEEEEeee
Confidence 10 11112334467787654 455555566667777888886554
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.019 Score=53.03 Aligned_cols=112 Identities=20% Similarity=0.124 Sum_probs=67.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc-h----hHHHHHCCCcccCC-HHHHHhhCCEEEEec---CCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-K----CDELVAHGATVGGS-PAEVIKKCTITIGML---ADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~-~----~~~l~~~g~~~~~~-~~~~~~~~dvvii~v---p~~~~~~~ 72 (291)
+|.|||.|..|..+|..|.+.|++|+++|+++. . .+.+.+.|+.+... ..+....+|+||++. |....+..
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~~~~~~ 97 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDAPLLAA 97 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCCHHHHH
Confidence 799999999999999999999999999986543 1 23455567665421 111334689999886 22222211
Q ss_pred HHh-c-----cCccc-cccCC----CcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 73 VVF-D-----KGGVL-EQICP----GKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 73 v~~-~-----~~~l~-~~l~~----~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
... + ..++. ....+ ..+-|.-|++...+..-+...+...+.
T Consensus 98 a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~ 149 (480)
T PRK01438 98 AADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGL 149 (480)
T ss_pred HHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCC
Confidence 110 0 00111 11211 134455566677777777777776544
|
|
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.016 Score=43.39 Aligned_cols=122 Identities=14% Similarity=0.116 Sum_probs=69.2
Q ss_pred EEecCCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH----HHHHHhhcC
Q 022834 134 ILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRT----LLDVLDLGG 209 (291)
Q Consensus 134 ~~~~g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~----~~~~~~~~~ 209 (291)
+.+.|+++..+.++++++.+|.+++.+.+ ..-..+....-+..+....++..+.+++++.|++.++ +..++..+.
T Consensus 4 ~~iEgd~~~~~~l~~l~~~lg~~~~~i~~-~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PLi~~t~ 82 (132)
T PF10728_consen 4 FAIEGDEEALEVLQELAKELGGRPFEIDS-EQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPLIRETL 82 (132)
T ss_dssp EEEEESHHHHHHHHHHHHHTTSEEEE--G-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHHHHHHH
T ss_pred EEEecCHHHHHHHHHHHHHhCCceEEeCH-HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH
Confidence 34445999999999999999999988865 3444444444455555678888899999999999954 445444321
Q ss_pred CCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 022834 210 IANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK 266 (291)
Q Consensus 210 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~ 266 (291)
..+.........+......|...+.+-.+...-.-|-...+++.+.+
T Consensus 83 ----------~n~~~~g~~~alTGP~~RgD~~Tv~kHl~~L~~~~p~~~~lY~~ls~ 129 (132)
T PF10728_consen 83 ----------ENILQLGPADALTGPAARGDIGTVAKHLAALDDHDPELKELYRALSR 129 (132)
T ss_dssp ----------HHHHHS-HHHH--SCCHCTHHHHHHHHHHHCCCH-HHHHHHHHHHHH
T ss_pred ----------HHHHhcCchhccCCCcccCCHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111111111222334456665555444443322555555555544
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.019 Score=46.37 Aligned_cols=113 Identities=17% Similarity=0.236 Sum_probs=65.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~ 69 (291)
.||.|+|+|.+|+.++.+|+..|. +++++|.+.=....+..+ |...+....+.++ ++++-+.+.+..
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~-- 99 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD-- 99 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC--
Confidence 379999999999999999999996 599998764322222211 2211111122121 456666554221
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
+.+.. ++ .+..-++|++++ ........+.+...+.++.++.+...|
T Consensus 100 ~~~~~---~~---~~~~~dvVi~~~-~~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 100 ISEKP---EE---FFSQFDVVVATE-LSRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred ccccH---HH---HHhCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 11111 11 122335777654 346666777777778888887666544
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0032 Score=42.71 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=31.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
||.|||.|..|.-+|..|++.|.+|+++.+++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 6899999999999999999999999999987654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.039 Score=50.44 Aligned_cols=114 Identities=13% Similarity=0.040 Sum_probs=68.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch--hHHHHH--CCCcccC--CHHHHHhhCCEEEEecC---CHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVA--HGATVGG--SPAEVIKKCTITIGMLA---DPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~--~~~l~~--~g~~~~~--~~~~~~~~~dvvii~vp---~~~~~~ 71 (291)
++|.|+|.|..|.+.++.|++.|++|+++|.++.. .+.+.+ .|+.+.. ...+...++|+||.... +...+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p~~~ 85 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIE 85 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCHHHH
Confidence 37999999999999999999999999999876543 334443 2655422 12334467899988742 222333
Q ss_pred HHHhc-c-----Cccc-cccC---CCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 72 SVVFD-K-----GGVL-EQIC---PGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 72 ~v~~~-~-----~~l~-~~l~---~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
..... . .++. .... ...+-|.-|++...+..-+...+...+..
T Consensus 86 ~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~ 138 (445)
T PRK04308 86 AFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD 138 (445)
T ss_pred HHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 22210 0 0111 1121 12344555666777777777777776654
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0049 Score=54.43 Aligned_cols=88 Identities=19% Similarity=0.273 Sum_probs=54.4
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHH---------------CCCccc-CCHHHHHhhCCEEEE
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA---------------HGATVG-GSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~---------------~g~~~~-~~~~~~~~~~dvvii 62 (291)
|||+|+| .|.+|..+.+.|.++.. +++.+.++.++...... ....+. .++++ ..++|+||.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence 4899998 79999999999987653 77777444433321111 011121 23333 478999999
Q ss_pred ecCCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 63 ~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
|+|... ..++. +.+ ...+..+||.|..
T Consensus 83 a~p~~~-s~~~~---~~~---~~~G~~vIDls~~ 109 (349)
T PRK08664 83 ALPSDV-AGEVE---EEF---AKAGKPVFSNASA 109 (349)
T ss_pred eCChhH-HHHHH---HHH---HHCCCEEEECCch
Confidence 997753 33333 222 2356778888764
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0087 Score=51.04 Aligned_cols=72 Identities=26% Similarity=0.286 Sum_probs=55.2
Q ss_pred eEEEEec-ChhhHHHHHHHHhC----CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
+|+|||- ..+|..++..|.++ +..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 163 ~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~----- 223 (297)
T PRK14168 163 EVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNLVK----- 223 (297)
T ss_pred EEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCccC-----
Confidence 6889987 56799999999987 6788887542 1367788899999999998765322
Q ss_pred cCccccccCCCcEEEEcCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 224 ----~~~ik~gavVIDvGin 239 (297)
T PRK14168 224 ----PEWIKPGATVIDVGVN 239 (297)
T ss_pred ----HHHcCCCCEEEecCCC
Confidence 2346799999998755
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0052 Score=54.08 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=29.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
+|+|||+|..|+.++..|++.|. +++++|.+.
T Consensus 178 ~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 178 RIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred cEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 79999999999999999999995 789998763
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.03 Score=52.01 Aligned_cols=113 Identities=17% Similarity=0.092 Sum_probs=67.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc--hhHHHHHC--CCcccC--CHHHHHhhCCEEEEe--cCCH-----H
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAH--GATVGG--SPAEVIKKCTITIGM--LADP-----A 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~~--g~~~~~--~~~~~~~~~dvvii~--vp~~-----~ 68 (291)
+|.|+|.|..|.++++.|.+.|++|+++|.... ..+.+.+. |+.+.. ...+.++++|+||+. +|.. .
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~~~~~ 88 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEAALAP 88 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcccccCH
Confidence 699999999999999999999999999997543 22345444 433321 233455678998886 3331 1
Q ss_pred HHHHHHh-cc-----Ccc-cccc--------CCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 69 AALSVVF-DK-----GGV-LEQI--------CPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 69 ~~~~v~~-~~-----~~l-~~~l--------~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
.+...-. +. .++ ...+ .+..+-|.-|++...+..-+...+...|..
T Consensus 89 ~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~ 149 (498)
T PRK02006 89 LVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149 (498)
T ss_pred HHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 1211110 00 001 1111 112344556667777777777777776544
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.009 Score=50.82 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=55.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhC----CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++.|||- .-+|..++..|.++ +..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 159 ~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------------T~nl~~~~~~ADIvIsAvGkp~~i~----- 219 (293)
T PRK14185 159 KCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR--------------SKNLKKECLEADIIIAALGQPEFVK----- 219 (293)
T ss_pred EEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC--------------CCCHHHHHhhCCEEEEccCCcCccC-----
Confidence 6889987 45699999999987 5678887542 1367788899999999998865332
Q ss_pred cCccccccCCCcEEEEcCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 220 ----~~~vk~gavVIDvGin 235 (293)
T PRK14185 220 ----ADMVKEGAVVIDVGTT 235 (293)
T ss_pred ----HHHcCCCCEEEEecCc
Confidence 2346799999998765
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0068 Score=58.23 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=47.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc---------------------hhHHHHHCCCcccC--------CHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~~--------~~~ 51 (291)
+||+|||.|..|.+.|..|++.||+|+++++.+. ..+.+.+.|+.+.. +.+
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~ 407 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLE 407 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCHH
Confidence 3799999999999999999999999999998643 12233344543311 334
Q ss_pred HHHhhCCEEEEecCC
Q 022834 52 EVIKKCTITIGMLAD 66 (291)
Q Consensus 52 ~~~~~~dvvii~vp~ 66 (291)
++....|.||+++..
T Consensus 408 ~~~~~~DavilAtGa 422 (654)
T PRK12769 408 SLLEDYDAVFVGVGT 422 (654)
T ss_pred HHHhcCCEEEEeCCC
Confidence 445578889988844
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.044 Score=46.31 Aligned_cols=137 Identities=13% Similarity=0.063 Sum_probs=74.4
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCH---
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADP--- 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~--- 67 (291)
+|.|+|+|.+|+..+..|++.| .+++++|.+.-....+..+ |..-+.-..+.+. +.++-+.+++..
T Consensus 32 ~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~~ 111 (268)
T PRK15116 32 HICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFITP 111 (268)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecccCh
Confidence 7999999999999999999999 6799998765433333321 1100111111111 345545554321
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec-----CCHHH
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA-----GEKAL 142 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----g~~~~ 142 (291)
+..++.+ ..+-++||++.. .+.....+.+...+.++.++...-.|+ ...+.-+-++ .....
T Consensus 112 e~~~~ll---------~~~~D~VIdaiD-~~~~k~~L~~~c~~~~ip~I~~gGag~----k~dp~~~~~~di~~t~~~pl 177 (268)
T PRK15116 112 DNVAEYM---------SAGFSYVIDAID-SVRPKAALIAYCRRNKIPLVTTGGAGG----QIDPTQIQVVDLAKTIQDPL 177 (268)
T ss_pred hhHHHHh---------cCCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEECCccc----CCCCCeEEEEeeecccCChH
Confidence 1222222 112357776544 344455677777777888885542222 1111112121 13344
Q ss_pred HHHHHHHHHH
Q 022834 143 YDEAISALNV 152 (291)
Q Consensus 143 ~~~~~~ll~~ 152 (291)
...++..|..
T Consensus 178 a~~~R~~lr~ 187 (268)
T PRK15116 178 AAKLRERLKS 187 (268)
T ss_pred HHHHHHHHHH
Confidence 5678888877
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0054 Score=51.43 Aligned_cols=39 Identities=33% Similarity=0.371 Sum_probs=34.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
|+|.|+|+ |.+|..++..|.++||+|++..|++++...+
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 68999995 9999999999999999999999987765543
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0087 Score=53.42 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=64.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|+|+|.+|+.++..|+..|. +++++|++.-....+..+ |...+....+.++ +.++-+.+.+....
T Consensus 137 ~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~- 215 (376)
T PRK08762 137 RVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVT- 215 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCC-
Confidence 79999999999999999999996 699999874333333222 1111111222221 23444444322110
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
++.+ ...+..-++||+++.. +.....+.+...+.++.++.+.+.|
T Consensus 216 ~~~~------~~~~~~~D~Vv~~~d~-~~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 216 SDNV------EALLQDVDVVVDGADN-FPTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred hHHH------HHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 0111 1122334677876655 3344456666777788888776544
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0086 Score=57.31 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=48.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc---------------------hhHHHHHCCCccc--------CCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~~ 51 (291)
.||+|||.|..|...+..|++.||+|+++++.+. ..+.+.+.|+.+. -+..
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~ 390 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFS 390 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCHH
Confidence 3799999999999999999999999999998753 2233444454321 1344
Q ss_pred HHHhhCCEEEEecCC
Q 022834 52 EVIKKCTITIGMLAD 66 (291)
Q Consensus 52 ~~~~~~dvvii~vp~ 66 (291)
++....|.||+++..
T Consensus 391 ~l~~~~DaV~latGa 405 (639)
T PRK12809 391 DLTSEYDAVFIGVGT 405 (639)
T ss_pred HHHhcCCEEEEeCCC
Confidence 555678999998854
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.022 Score=48.56 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=36.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCc-EEEEcCCcchhHHHHHCCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGAT 45 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g~~ 45 (291)
++.|+|+|.+|...+..+...|.+ |++.++++++.+.+.+.|+.
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 588999999999999888888986 88889888888777776653
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.013 Score=48.88 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=35.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|+|.|+|+ |.+|..++..|.+.|++|++.+|++++.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 88999985 99999999999999999999999987765543
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.014 Score=51.67 Aligned_cols=73 Identities=27% Similarity=0.326 Sum_probs=49.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcC---CcchhHHHHHCCCcccCCHHH------HHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNR---TLSKCDELVAHGATVGGSPAE------VIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r---~~~~~~~l~~~g~~~~~~~~~------~~~~~dvvii~vp~~~~~~~ 72 (291)
+|.|+|+|.+|...+..+...|.+|+++++ ++++.+.+.+.|+......++ .....|++|-|+..+..+..
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 254 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPLAFE 254 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHHHHH
Confidence 588999999999999888888999999988 567777666666543321111 11246777777755443443
Q ss_pred HH
Q 022834 73 VV 74 (291)
Q Consensus 73 v~ 74 (291)
.+
T Consensus 255 ~~ 256 (355)
T cd08230 255 AL 256 (355)
T ss_pred HH
Confidence 33
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.012 Score=50.19 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=55.0
Q ss_pred eEEEEecC-hhhHHHHHHHHhC----CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++.|||-+ -+|..++..|.++ +..|+++... +.++.+..++||+||.|+.++.-+.
T Consensus 159 ~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~----- 219 (297)
T PRK14167 159 DVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR--------------TDDLAAKTRRADIVVAAAGVPELID----- 219 (297)
T ss_pred EEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC-----
Confidence 68899874 5799999999887 6788887542 1366788899999999998765322
Q ss_pred cCccccccCCCcEEEEcCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 220 ----~~~ik~gaiVIDvGin 235 (297)
T PRK14167 220 ----GSMLSEGATVIDVGIN 235 (297)
T ss_pred ----HHHcCCCCEEEEcccc
Confidence 2347799999998755
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.014 Score=52.24 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=64.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEE-EEcCC----------cchhHHHHHCC--------CcccCCHHHH-HhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRT----------LSKCDELVAHG--------ATVGGSPAEV-IKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~-~~~r~----------~~~~~~l~~~g--------~~~~~~~~~~-~~~~dvv 60 (291)
++|+|.|+|++|...+..|.+.|.+|+ +.|.+ .+.+...++.+ .... +.+++ ..+||++
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dvl 285 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDVL 285 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccEE
Confidence 479999999999999999999999988 66766 44443332221 1112 22332 3479988
Q ss_pred EEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 61 ii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+-|--...-.++.. +.+ +-++|+...|+.. ..+..+.+.++|+.|+
T Consensus 286 iP~Al~~~I~~~na-------~~i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~ 331 (410)
T PLN02477 286 IPAALGGVINKENA-------ADV-KAKFIVEAANHPT--DPEADEILRKKGVVVL 331 (410)
T ss_pred eeccccccCCHhHH-------HHc-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEE
Confidence 87752211112222 223 4467777766643 3345567788887665
|
|
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.014 Score=51.17 Aligned_cols=120 Identities=14% Similarity=0.157 Sum_probs=63.9
Q ss_pred CeEEEEecChhhHHHHHHHHhC--------CCcEE---EEcCCcchhH-------HHHHCCC-c------ccCCHHHHH-
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--------GFKVT---VWNRTLSKCD-------ELVAHGA-T------VGGSPAEVI- 54 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--------g~~V~---~~~r~~~~~~-------~l~~~g~-~------~~~~~~~~~- 54 (291)
++|+++|+|.+|..++..|.++ |.++. +.+++..... .+.+.+. . ...+..+..
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERAT 82 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHhc
Confidence 4899999999999999998753 44433 3355433221 1111100 0 111222222
Q ss_pred h--hCCEEEEecCCHHH-HHHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEE-EcccCCC
Q 022834 55 K--KCTITIGMLADPAA-ALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFL-EAPVSGS 123 (291)
Q Consensus 55 ~--~~dvvii~vp~~~~-~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~ 123 (291)
. +.|+||-|+|+... .+... +-+..++..|..||...... ....+++.+...+.++.|. ++.+-|+
T Consensus 83 ~~~~~dVvVe~T~s~~~~~e~a~---~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggG 153 (346)
T PRK06813 83 DNISGTVLVESTVTNLKDGNPGK---QYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAA 153 (346)
T ss_pred CCCCCCEEEECCCCccCCchHHH---HHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeec
Confidence 2 47999999875311 11111 12245567888888543321 1233556666667777776 5544433
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0034 Score=54.55 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=45.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-------cCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvvii~v 64 (291)
|||.|.|. |.+|..++..|.+.|++|++.+|+++....+...++.. ..+..++++.+|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 78999985 99999999999999999999999876654333223221 112334555678777665
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.018 Score=51.77 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=63.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHH--hhCCEEEEe--cCCH-HHH---HH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI--KKCTITIGM--LADP-AAA---LS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~--~~~dvvii~--vp~~-~~~---~~ 72 (291)
|+|.|+|.|.-|.+.++.|. .|++|+++|..+.... +.+.|+... . .+.. +++|+||.. +|.. ..+ ++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 89999999999999999999 9999999996533221 223355553 2 2223 368977765 2221 222 22
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
++- ..++...+.+..+-|.-|++...+..-+...+...+
T Consensus 77 i~~-~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g 115 (401)
T PRK03815 77 LIS-EYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFG 115 (401)
T ss_pred Hhh-HHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence 220 011221121224455566677777777777777655
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0075 Score=51.92 Aligned_cols=64 Identities=25% Similarity=0.249 Sum_probs=49.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHH---HHHC-C-----------CcccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDE---LVAH-G-----------ATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~---l~~~-g-----------~~~~~~~~~~~~~~dvvii~v 64 (291)
|+|+|-|+ |.+|+.+...|.++||.|...-|+++.-+. +.+. + +.-..+.+++++.||.||-+-
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~A 86 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTA 86 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeC
Confidence 57899977 999999999999999999999998886322 3332 1 233557788899999998654
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.022 Score=50.05 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=37.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT 45 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~ 45 (291)
+|.|+|+|.+|......+...|. +|++.++++++.+.+.+.|+.
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 68899999999999988888897 588899999998887777754
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0039 Score=55.46 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=32.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|+|.|||+|..|.++|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 8999999999999999999999999999998765
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.012 Score=54.04 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=47.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc---------------------hhHHHHHCCCccc------C--CHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG------G--SPAE 52 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~------~--~~~~ 52 (291)
+|.|||.|..|...+..|++.|++|+++++.+. ..+.+.+.|+.+. . ..++
T Consensus 143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~ 222 (467)
T TIGR01318 143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISLDD 222 (467)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCHHH
Confidence 799999999999999999999999999987642 1233445554431 1 2334
Q ss_pred HHhhCCEEEEecCC
Q 022834 53 VIKKCTITIGMLAD 66 (291)
Q Consensus 53 ~~~~~dvvii~vp~ 66 (291)
....+|.||+|+..
T Consensus 223 ~~~~~D~vilAtGa 236 (467)
T TIGR01318 223 LLEDYDAVFLGVGT 236 (467)
T ss_pred HHhcCCEEEEEeCC
Confidence 44568889988854
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.09 Score=43.49 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=79.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCH---
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADP--- 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~--- 67 (291)
||.|+|+|.+|+.++..|++.|. +++++|.+.-....+..+ |..-+....+.+. +.++-+.+.+..
T Consensus 13 ~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i~~ 92 (231)
T cd00755 13 HVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLTP 92 (231)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeecCH
Confidence 79999999999999999999996 799998765433333222 2111111112111 345555554221
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecC-----CHHH
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG-----EKAL 142 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-----~~~~ 142 (291)
+...+.+ ..+-++||++.-. +.....+.+...+.++.++...-.|+-.. +.-+-+.. ....
T Consensus 93 ~~~~~l~---------~~~~D~VvdaiD~-~~~k~~L~~~c~~~~ip~I~s~g~g~~~d----p~~i~i~di~~t~~~pl 158 (231)
T cd00755 93 DNSEDLL---------GGDPDFVVDAIDS-IRAKVALIAYCRKRKIPVISSMGAGGKLD----PTRIRVADISKTSGDPL 158 (231)
T ss_pred hHHHHHh---------cCCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeCCcCCCC----CCeEEEccEeccccCcH
Confidence 1122222 1123577776544 44445677777777888886643332111 11121111 2234
Q ss_pred HHHHHHHHHHhc----cceEeeCC
Q 022834 143 YDEAISALNVIG----KKAFFLGE 162 (291)
Q Consensus 143 ~~~~~~ll~~~g----~~~~~~~~ 162 (291)
...++..|..-+ .+++|..+
T Consensus 159 a~~~R~~Lrk~~~~~~~~~v~S~E 182 (231)
T cd00755 159 ARKVRKRLRKRGIFFGVPVVYSTE 182 (231)
T ss_pred HHHHHHHHHHcCCCCCeEEEeCCC
Confidence 557777777744 33455444
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.012 Score=56.48 Aligned_cols=66 Identities=24% Similarity=0.315 Sum_probs=48.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch---------------------hHHHHHCCCccc--------CCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK---------------------CDELVAHGATVG--------GSPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~---------------------~~~l~~~g~~~~--------~~~~ 51 (291)
+||+|||+|..|...|..|++.||+|+++++++.. .+.+...|+.+. -+.+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~~ 273 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITLE 273 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCHH
Confidence 47999999999999999999999999999876532 233444454431 1234
Q ss_pred HHHhhCCEEEEecCC
Q 022834 52 EVIKKCTITIGMLAD 66 (291)
Q Consensus 52 ~~~~~~dvvii~vp~ 66 (291)
+....+|.||+++..
T Consensus 274 ~~~~~~DaVilAtGa 288 (652)
T PRK12814 274 ELQKEFDAVLLAVGA 288 (652)
T ss_pred HHHhhcCEEEEEcCC
Confidence 444568999999854
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0049 Score=48.75 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=43.7
Q ss_pred eEEEEecChhhHHHH--HHHHhC----CCcEEEEcCCcchhHHHHH--------CC----CcccCCHHHHHhhCCEEEEe
Q 022834 2 EVGFLGLGIMGKAIS--MNLLRN----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIGM 63 (291)
Q Consensus 2 kI~iIG~G~mG~~la--~~l~~~----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvvii~ 63 (291)
||+|||+|+.-.... ..+... +.++.++|+++++++.... .| +..++|.+++++++|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 899999999876633 233332 2379999999998874322 23 23477899999999999998
Q ss_pred cCC
Q 022834 64 LAD 66 (291)
Q Consensus 64 vp~ 66 (291)
+..
T Consensus 81 irv 83 (183)
T PF02056_consen 81 IRV 83 (183)
T ss_dssp --T
T ss_pred eee
Confidence 743
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.011 Score=50.87 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=72.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHH---HHHHHhc--
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA---ALSVVFD-- 76 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~---~~~v~~~-- 76 (291)
+|+|||.-.=-..++..|.+.|++|.++.-+.+.. ...|+...++.+++++++|+|+..+|.... +...+..
T Consensus 4 ~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 4 HIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 79999999999999999999999999976543222 233888888888889999999999864211 1111000
Q ss_pred ---cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 77 ---KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 77 ---~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
+++....++++.+++ .+...|.. .+.+.++++.+++.
T Consensus 81 ~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~ 120 (296)
T PRK08306 81 LVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVEL 120 (296)
T ss_pred CcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEE
Confidence 012345566776544 35555542 23455778777643
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.012 Score=48.79 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=61.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.=....+..+ |..-+....+.++ +.++-+.+.... +
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~--i 78 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK--V 78 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc--C
Confidence 68999999999999999999996 688988765443334332 1111111111111 234444443221 1
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
.+.. ..-...++.-++|++... ....-..+.+.....++.++++...|
T Consensus 79 ~~~~---~~~~~f~~~~DvVi~a~D-n~~aR~~ln~~c~~~~iplI~~g~~G 126 (234)
T cd01484 79 GPEQ---DFNDTFFEQFHIIVNALD-NIIARRYVNGMLIFLIVPLIESGTEG 126 (234)
T ss_pred Chhh---hchHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEcccC
Confidence 0000 000112333456666543 34444556666666677787766443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.047 Score=44.70 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=48.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc-chhHHHHHCC-Cccc---CCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHG-ATVG---GSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l~~~g-~~~~---~~~~~~~~~~dvvii~vp~~~~ 69 (291)
++|.|||.|.++..=+..|.+.|.+|+++...- +.+..+.+.| +++. -+.. .+..+++||.|+.++..
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~-dl~g~~LViaATdD~~v 98 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKE-FIKDKHLIVIATDDEKL 98 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH-HhCCCcEEEECCCCHHH
Confidence 379999999999999999999999999997543 2344444433 3222 1333 35789999999966443
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.022 Score=50.38 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=62.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.=....+..+ |...+....+.++ +.++-+.+.+..-..
T Consensus 30 ~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i~~ 109 (355)
T PRK05597 30 KVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLTW 109 (355)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeecCH
Confidence 79999999999999999999996 688998765332222221 2111111112111 345555554221111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
+... ..+..-++||+++-. ..+...+.....+.++.++.+.+.|.
T Consensus 110 ~~~~-------~~~~~~DvVvd~~d~-~~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 110 SNAL-------DELRDADVILDGSDN-FDTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred HHHH-------HHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 1111 122334677776544 33334455555666777776654443
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0092 Score=52.60 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=53.2
Q ss_pred CeEEEEec-ChhhHHHHH-HHHhCCCc---EEEEcCCc--chhHHHHHCCCcccC--CHHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISM-NLLRNGFK---VTVWNRTL--SKCDELVAHGATVGG--SPAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~-~l~~~g~~---V~~~~r~~--~~~~~l~~~g~~~~~--~~~~~~~~~dvvii~vp~~~~~~ 71 (291)
|+|+|||+ |.+|..|.+ .|....++ +..+.... .+...+..+...+.. +.+ ...++|++|+|+|.. ..+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~-~~~~~Divf~a~~~~-~s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDID-ALKKLDIIITCQGGD-YTN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChh-HhcCCCEEEECCCHH-HHH
Confidence 58999998 999999998 55566676 66654321 111112221122222 233 346899999999664 444
Q ss_pred HHHhccCccccccCCC--cEEEEcCCC
Q 022834 72 SVVFDKGGVLEQICPG--KGYIDMSTV 96 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~--~~vv~~s~~ 96 (291)
++. +++ ...| .+|||.|+.
T Consensus 80 ~~~---~~~---~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 80 EVY---PKL---RAAGWQGYWIDAAST 100 (369)
T ss_pred HHH---HHH---HhCCCCeEEEECChH
Confidence 454 333 2356 569998864
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.01 Score=55.31 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=63.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCccc--CCHHHH-HhhCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVG--GSPAEV-IKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~--~~~~~~-~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
++.|+|+|.+|.+++..|++.|.+|++++|+.++++.+.+. +.... .+..+. ...+|+|+-|+|-...-. .- .
T Consensus 381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~-~~--~ 457 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPN-VD--E 457 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCC-CC--C
Confidence 57899999999999999999999999999999988887653 21111 111111 124567776665432100 00 0
Q ss_pred Ccc-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 78 GGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 78 ~~l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+ ...+++..+++|+.-....+ .+.+...+.|+..+
T Consensus 458 ~pl~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~ 495 (529)
T PLN02520 458 TPISKHALKHYSLVFDAVYTPKIT--RLLREAEESGAIIV 495 (529)
T ss_pred CcccHhhCCCCCEEEEeccCCCcC--HHHHHHHHCCCeEe
Confidence 001 12344567777765443221 22333344555544
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.031 Score=51.35 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=66.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch-h----HHHHHCCCcccC--CHH-----HHHhhCCEEEEecC---C
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-C----DELVAHGATVGG--SPA-----EVIKKCTITIGMLA---D 66 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~----~~l~~~g~~~~~--~~~-----~~~~~~dvvii~vp---~ 66 (291)
||.|||.|..|.+.++.|.+.|++|+++|+.+.. . +.+.+.|+++.. ... +...++|.|+..-. +
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 7999999999999999999999999999976432 2 235555765522 111 34567898887532 1
Q ss_pred HHHHHHHHh-cc---Ccc---ccccCCCc-EEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 67 PAAALSVVF-DK---GGV---LEQICPGK-GYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 67 ~~~~~~v~~-~~---~~l---~~~l~~~~-~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
...+..... +. .++ .....+.+ +-|.-|++...+..-+...+...|..
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~ 137 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGLN 137 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCC
Confidence 122222210 00 111 11112223 44555566777777777777766543
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.017 Score=49.35 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=53.5
Q ss_pred eEEEEecC-hhhHHHHHHHHh----CCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGLG-IMGKAISMNLLR----NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~----~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++.|||-+ -+|..++..|.+ .+..|++...+. .++.+.+++||++|.+++++.-+.
T Consensus 161 ~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~~li~----- 221 (295)
T PRK14174 161 HCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKARFIT----- 221 (295)
T ss_pred EEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCccCccC-----
Confidence 68889874 569999999887 577888876542 356788899999999997753211
Q ss_pred cCccccccCCCcEEEEcCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 222 ----~~~vk~GavVIDVgi~ 237 (295)
T PRK14174 222 ----ADMVKPGAVVIDVGIN 237 (295)
T ss_pred ----HHHcCCCCEEEEeecc
Confidence 2345799999998755
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0096 Score=53.84 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=47.3
Q ss_pred CeEEEEecChh-hHHHHHHHHhC-----CCcEEEEcCCcchhHHHHH--------CC----CcccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIM-GKAISMNLLRN-----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~m-G~~la~~l~~~-----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvvii 62 (291)
|||+|||+|+. ...+...|.+. +-+|.++|.++++.+.... .| +..+.|.+++++++|+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 89999999984 33455555543 3579999999988765322 23 3457789999999999999
Q ss_pred ec
Q 022834 63 ML 64 (291)
Q Consensus 63 ~v 64 (291)
.+
T Consensus 81 ~i 82 (425)
T cd05197 81 QF 82 (425)
T ss_pred ee
Confidence 86
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0054 Score=55.44 Aligned_cols=34 Identities=35% Similarity=0.513 Sum_probs=31.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|+|.|||.|-+|.+.|..|+++|++|+++++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 8999999999999999999999999999999643
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.016 Score=49.15 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=54.5
Q ss_pred eEEEEec-ChhhHHHHHHHHh----CCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGL-GIMGKAISMNLLR----NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~----~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++.|||- .-+|..++..|.+ .+..|+++..+. .++.+.+++||+||.+++++.-+..
T Consensus 159 ~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~li~~---- 220 (286)
T PRK14184 159 KAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPRFVTA---- 220 (286)
T ss_pred EEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCcCCH----
Confidence 6889987 4569999999998 667888876532 3677888999999999977543221
Q ss_pred cCccccccCCCcEEEEcCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~ 96 (291)
.++++|.+|||.+..
T Consensus 221 -----~~vk~GavVIDVGi~ 235 (286)
T PRK14184 221 -----DMVKPGAVVVDVGIN 235 (286)
T ss_pred -----HHcCCCCEEEEeeee
Confidence 345789999998754
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.012 Score=50.63 Aligned_cols=89 Identities=20% Similarity=0.178 Sum_probs=55.0
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCc---EEEE--cCCcchh-HHHHHCCCcccCC--HHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVW--NRTLSKC-DELVAHGATVGGS--PAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~---V~~~--~r~~~~~-~~l~~~g~~~~~~--~~~~~~~~dvvii~vp~~~~~~ 71 (291)
|||+|+|+ |.+|..|...|.+..+. +.++ .|+..+- -.+......+..+ .....+++|++|.|.|.+.. +
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s-~ 80 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVS-K 80 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHH-H
Confidence 58999976 99999999999996553 3344 3333222 2233222333331 12234579999999966443 5
Q ss_pred HHHhccCccccccCCCcEEEEcCCC
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
++. +++ .+.|.+|||.|+.
T Consensus 81 ~~~---p~~---~~~G~~VIdnsSa 99 (334)
T COG0136 81 EVE---PKA---AEAGCVVIDNSSA 99 (334)
T ss_pred HHH---HHH---HHcCCEEEeCCcc
Confidence 555 333 3467888987765
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.016 Score=52.76 Aligned_cols=66 Identities=24% Similarity=0.295 Sum_probs=50.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch---------------------hHHHHHCCCcc--------cCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK---------------------CDELVAHGATV--------GGSPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~---------------------~~~l~~~g~~~--------~~~~~ 51 (291)
.+|+|||.|.-|.+.+..|++.||+|+++++.+.. ++.+.+.|+.+ .-+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~ 203 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLE 203 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHH
Confidence 47999999999999999999999999999886542 22333444322 33678
Q ss_pred HHHhhCCEEEEecCC
Q 022834 52 EVIKKCTITIGMLAD 66 (291)
Q Consensus 52 ~~~~~~dvvii~vp~ 66 (291)
++.++.|.|++|+..
T Consensus 204 ~L~~e~Dav~l~~G~ 218 (457)
T COG0493 204 ELLKEYDAVFLATGA 218 (457)
T ss_pred HHHHhhCEEEEeccc
Confidence 888888999999843
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.021 Score=51.66 Aligned_cols=108 Identities=15% Similarity=0.074 Sum_probs=65.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEE-c----------CCcchhHHHHHC------------CCcccCCHHHHH-hh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW-N----------RTLSKCDELVAH------------GATVGGSPAEVI-KK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~-~----------r~~~~~~~l~~~------------g~~~~~~~~~~~-~~ 56 (291)
++|+|.|.|++|...+..|.+.|.+|+.+ | .+.+.+...++. +.... +.+++. .+
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i~~~d 311 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSPWSVP 311 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCccccccC
Confidence 48999999999999999999999998866 7 455544433322 11111 233332 37
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
|||++-|.....-..+.. .++.+ .+-++|+...|+.. ..+-.+.+.++|+.|+
T Consensus 312 ~DVliPaAl~n~It~~~a---~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~v 364 (445)
T PRK09414 312 CDIALPCATQNELDEEDA---KTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFA 364 (445)
T ss_pred CcEEEecCCcCcCCHHHH---HHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEE
Confidence 999998875443333333 22221 12356676666643 3345566778887665
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.006 Score=55.06 Aligned_cols=32 Identities=31% Similarity=0.655 Sum_probs=30.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
+|.|||.|-+|.+.|..|++.|++|+++++..
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 89999999999999999999999999999875
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.028 Score=44.51 Aligned_cols=40 Identities=30% Similarity=0.311 Sum_probs=34.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|++.|+|...||..++..|.+.|++|.+.+|++++.+.+.
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~ 40 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVK 40 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHH
Confidence 8899999878889999999999999999999887766554
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.013 Score=53.13 Aligned_cols=64 Identities=11% Similarity=0.168 Sum_probs=46.9
Q ss_pred CeEEEEecChhhH-HHHHHHHhC-----CCcEEEEcCCcchhHHHHH--------CC----CcccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRN-----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~-----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvvii 62 (291)
|||+|||+|+.=+ .+...|.+. +-+|+++|.++++++.... .| +..+.|.++++++||.||.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 8999999998622 344555543 3579999999988765322 13 3456789999999999999
Q ss_pred ec
Q 022834 63 ML 64 (291)
Q Consensus 63 ~v 64 (291)
+.
T Consensus 81 ~i 82 (437)
T cd05298 81 QI 82 (437)
T ss_pred Ee
Confidence 86
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.018 Score=49.79 Aligned_cols=86 Identities=22% Similarity=0.219 Sum_probs=63.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
++.|.|+|..|..+|..+...|.+|.++..+|-++-...=+|.++. ..++++..+|++|.|+.... |+. .+-.
T Consensus 211 ~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkd----Vi~--~eh~ 283 (420)
T COG0499 211 NVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKD----VIR--KEHF 283 (420)
T ss_pred eEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcC----ccC--HHHH
Confidence 4677899999999999999999999999998876655555687765 57788889999999985532 221 1112
Q ss_pred cccCCCcEEEEcC
Q 022834 82 EQICPGKGYIDMS 94 (291)
Q Consensus 82 ~~l~~~~~vv~~s 94 (291)
...+.+.++.+..
T Consensus 284 ~~MkDgaIl~N~G 296 (420)
T COG0499 284 EKMKDGAILANAG 296 (420)
T ss_pred HhccCCeEEeccc
Confidence 2355666766554
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.013 Score=52.93 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=46.3
Q ss_pred CeEEEEecChhhH-HHHHHHHhC-----CCcEEEEcCC-cchhHHHHH--------CC----CcccCCHHHHHhhCCEEE
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRN-----GFKVTVWNRT-LSKCDELVA--------HG----ATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~-----g~~V~~~~r~-~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvvi 61 (291)
|||+|||+|+.-+ .+...|.+. +-+|.++|++ +++++.... .| +..+.+.+++++++|+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 8999999999744 344555542 2479999999 777654221 23 334678899999999999
Q ss_pred Eec
Q 022834 62 GML 64 (291)
Q Consensus 62 i~v 64 (291)
++.
T Consensus 81 ~~~ 83 (419)
T cd05296 81 TQI 83 (419)
T ss_pred EEE
Confidence 986
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.087 Score=47.19 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=63.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc---CCHHHHH-----hhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG---GSPAEVI-----KKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~---~~~~~~~-----~~~dvvii~vp~~~~~~~v 73 (291)
++-|+|.|.+|..++..|.+.|+++++.+.+ +.+...+.+..+. .+.++.+ ++|+.++++++++..-..+
T Consensus 242 HvII~G~g~lg~~v~~~L~~~g~~vvVId~d--~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i 319 (393)
T PRK10537 242 HFIICGHSPLAINTYLGLRQRGQAVTVIVPL--GLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV 319 (393)
T ss_pred eEEEECCChHHHHHHHHHHHCCCCEEEEECc--hhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence 4789999999999999999999999999865 2333333443221 1222333 4789999988776544444
Q ss_pred HhccCccccccCCC-cEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 74 VFDKGGVLEQICPG-KGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 74 ~~~~~~l~~~l~~~-~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
+. . .+.+.++ ++++-.. .+.. .+.+.+.|...+-.|
T Consensus 320 vL---~-ar~l~p~~kIIa~v~--~~~~----~~~L~~~GaD~VIsp 356 (393)
T PRK10537 320 VL---A-AKEMSSDVKTVAAVN--DSKN----LEKIKRVHPDMIFSP 356 (393)
T ss_pred HH---H-HHHhCCCCcEEEEEC--CHHH----HHHHHhcCCCEEECH
Confidence 41 1 2223333 4555332 2332 334455677776555
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.017 Score=49.22 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=28.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
||.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 68999999999999999999995 688887653
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0092 Score=39.12 Aligned_cols=30 Identities=33% Similarity=0.627 Sum_probs=27.1
Q ss_pred EEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 5 FLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 5 iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|||+|.-|...|..|+++|++|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998754
|
... |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0072 Score=54.65 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=32.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|+|.|||+|-.|.++|..|+++|++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 8999999999999999999999999999998764
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.013 Score=50.86 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=50.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH-HCCCcc-cC---CHHHHHhhCCEE---EEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATV-GG---SPAEVIKKCTIT---IGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-~~g~~~-~~---~~~~~~~~~dvv---ii~vp~~~~~~~ 72 (291)
|+|||||.|-.|..|+..-..-|++|.+.|.+++...... +.-+.. .+ .+.++++.||+| |.-+|. +.++.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~-~aL~~ 80 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPA-EALEK 80 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCH-HHHHH
Confidence 5799999999999999999999999999998876544332 222222 22 345677789987 334533 34444
Q ss_pred HH
Q 022834 73 VV 74 (291)
Q Consensus 73 v~ 74 (291)
+.
T Consensus 81 l~ 82 (375)
T COG0026 81 LA 82 (375)
T ss_pred HH
Confidence 43
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.048 Score=46.46 Aligned_cols=73 Identities=22% Similarity=0.269 Sum_probs=56.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcccCCHH-------HHHh-----hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPA-------EVIK-----KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~-------~~~~-----~~dvvii~vp~~~ 68 (291)
.++|+|+|.+|.+.+..-..+|. +++.+|.|+++.+..++.|++-.-++. |.+. ..|+-|-|+.+.+
T Consensus 195 tvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~ 274 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVS 274 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCHH
Confidence 58999999999999999988885 699999999999998888865433333 3322 3688888887766
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
.+.+.+
T Consensus 275 ~m~~al 280 (375)
T KOG0022|consen 275 TMRAAL 280 (375)
T ss_pred HHHHHH
Confidence 666665
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.021 Score=49.38 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=62.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.-....+..+ |...+....+.++ +.++-+.+... .+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~--~i 78 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHA--NI 78 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEec--cC
Confidence 68999999999999999999995 699998765443333322 1111111112221 24444444311 11
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
.+.. .....+..-++|+++. ..+.....+.+.....++.++++...|
T Consensus 79 ~~~~----~~~~f~~~~DvVv~a~-Dn~~ar~~in~~c~~~~ip~I~~gt~G 125 (312)
T cd01489 79 KDPD----FNVEFFKQFDLVFNAL-DNLAARRHVNKMCLAADVPLIESGTTG 125 (312)
T ss_pred CCcc----chHHHHhcCCEEEECC-CCHHHHHHHHHHHHHCCCCEEEEecCc
Confidence 1100 0012233335666543 345555556677777788888766444
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.026 Score=47.46 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=34.8
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|++.|.|. |.+|.+++..|++.|++|++.+|++++.+.+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL 41 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 88999976 88999999999999999999999987665543
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.021 Score=47.53 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=28.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-----------CcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-----------FKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-----------~~V~~~~r~~~ 34 (291)
.||.|||+|.+|+.++..|++.| .+++++|.+.=
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 37999999999999999999863 28899987643
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.042 Score=49.27 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=28.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 40 ~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 40 SVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 79999999999999999999996 688888753
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.026 Score=47.37 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=35.6
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
++.|-|+ +.+|..+|+.|+++|++|+++.|+.++++.+.+
T Consensus 8 ~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~ 48 (265)
T COG0300 8 TALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAK 48 (265)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH
Confidence 4556677 999999999999999999999999999988765
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.019 Score=49.04 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=27.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT 32 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~ 32 (291)
||.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999996 58888765
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.015 Score=51.99 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=45.7
Q ss_pred CeEEEEe-cChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHCC-------Ccc-------cCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHG-------ATV-------GGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g-------~~~-------~~~~~~~~~~~dvvii~v 64 (291)
|||.|.| +|-+|+.++..|.++ |++|++++|+.++...+...+ +.+ ..+..++++++|+||-+.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlA 94 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLA 94 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcc
Confidence 7899997 599999999999998 599999998877665544321 111 112344566789888765
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.12 Score=47.17 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=66.8
Q ss_pred eEEEEecChhhHHHHHHHHhC--CCcEEEEcCCcch--hHHHHHCCCccc-C-CHHHHHhhCCEEEEec--C-CHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSK--CDELVAHGATVG-G-SPAEVIKKCTITIGML--A-DPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~~~--~~~l~~~g~~~~-~-~~~~~~~~~dvvii~v--p-~~~~~~~ 72 (291)
||.|||.|..|.+-++.|.+. |++|+++|..+.. .+.+.+ |+.+. . ...+.+.++|+||+.- | +...+..
T Consensus 9 ~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~~ 87 (438)
T PRK04663 9 NVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQQ 87 (438)
T ss_pred eEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHHH
Confidence 699999999999999999987 5889999975432 233533 76652 1 1233456789877764 2 2222322
Q ss_pred HHh-c-----cCccc-cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE
Q 022834 73 VVF-D-----KGGVL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 73 v~~-~-----~~~l~-~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
... + ..++. ...+...+-|.-|++...+..-+...+...+...
T Consensus 88 a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 137 (438)
T PRK04663 88 VLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKV 137 (438)
T ss_pred HHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCE
Confidence 210 0 00121 1222223445556667777777777777766543
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.038 Score=47.13 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=30.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcch
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSK 35 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~ 35 (291)
||.|+|+|.+|..++.+|+.+|. +++++|.+.-.
T Consensus 21 ~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve 55 (286)
T cd01491 21 NVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCS 55 (286)
T ss_pred cEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccc
Confidence 79999999999999999999995 69999876433
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.046 Score=49.06 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=29.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~ 34 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.=
T Consensus 44 ~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~v 77 (392)
T PRK07878 44 RVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVV 77 (392)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 79999999999999999999996 6889987643
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.009 Score=53.56 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=31.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|+|.|||.|..|.++|..|++.|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 7999999999999999999999999999987654
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.045 Score=46.41 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=32.5
Q ss_pred Ce-EEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 1 ME-VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 1 mk-I~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|| +.|.|+ |.+|..++..|++.|++|++.+|+++..+.+.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA 42 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 55 455564 99999999999999999999999877665544
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.01 Score=49.59 Aligned_cols=58 Identities=22% Similarity=0.398 Sum_probs=44.5
Q ss_pred ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHh-hCCEEEEec
Q 022834 7 GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGML 64 (291)
Q Consensus 7 G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~~dvvii~v 64 (291)
|.|-+|++|...|.+.||+|++..|++.+.+.....++...+..++... ++|+||---
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLA 64 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLA 64 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECC
Confidence 6799999999999999999999999988876655444444445555554 589887554
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.039 Score=45.42 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=57.3
Q ss_pred eEEEE-ec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI-G~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
||.+| |+ ..+|.++++.|+++|++|.+..|+.++++.++.+--. ..+..+.+=|.+...++..+ +.
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---------~~~~~~~~DVtD~~~~~~~i---~~ 74 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA---------GAALALALDVTDRAAVEAAI---EA 74 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---------CceEEEeeccCCHHHHHHHH---HH
Confidence 45556 66 7899999999999999999999999999988753211 22333444455666777777 55
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
+...+.+=+++|+....
T Consensus 75 ~~~~~g~iDiLvNNAGl 91 (246)
T COG4221 75 LPEEFGRIDILVNNAGL 91 (246)
T ss_pred HHHhhCcccEEEecCCC
Confidence 55555555677765443
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.03 Score=51.61 Aligned_cols=33 Identities=39% Similarity=0.509 Sum_probs=30.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
++|.|||.|..|...|..|++.|++|+++++.+
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 479999999999999999999999999998764
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.049 Score=52.19 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=64.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||+|+|+|.+|+.++..|+..|. +++++|.+.=....+..+ |..-+.-..+.+. +.++-|.+.+..-.-
T Consensus 45 ~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~~ 124 (679)
T PRK14851 45 KVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINA 124 (679)
T ss_pred eEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCCh
Confidence 79999999999999999999995 688888764333333322 2111111122221 345555555332111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
+. + ...+..-++|||++... ......+.+...+.++.++.+.+.|
T Consensus 125 ~n-~------~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 125 DN-M------DAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred HH-H------HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 11 1 12233447888877653 3334456666667788888665433
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.02 Score=53.39 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=33.5
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
.|.|.|+ |.+|..++..|++.|++|++++|+.++.+.+.
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 4667775 99999999999999999999999988876553
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.032 Score=47.97 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=33.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+|.|.|+ |.+|..++..|++.|++|.+.+|+.++.+.+.
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 5677775 99999999999999999999999987766544
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.049 Score=48.40 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=29.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~ 34 (291)
+|.|||+|.+|+.++..|+..|. +++++|.+.=
T Consensus 43 ~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~v 76 (370)
T PRK05600 43 RVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTV 76 (370)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEE
Confidence 79999999999999999999995 7999988743
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.01 Score=53.24 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=31.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
++|.|||+|-.|.++|..|++.|++|+++++.++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 3899999999999999999999999999998754
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.03 Score=48.60 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=31.0
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
|+|.|.| +|.+|+.++..|.++||+|++.+|+.+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~ 40 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPND 40 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 5788998 6999999999999999999998887654
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.051 Score=46.00 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=33.2
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+|.|.|+ |.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA 44 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5677775 99999999999999999999999987766554
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.03 Score=48.68 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=23.3
Q ss_pred eEEEEecChhhHHHHHHHHhCC----CcEEEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG----FKVTVW 29 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g----~~V~~~ 29 (291)
||||+|+|++|..+.+.|.+.+ ++|...
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaI 32 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVAL 32 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 6999999999999999988753 666644
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.012 Score=51.64 Aligned_cols=34 Identities=32% Similarity=0.523 Sum_probs=29.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
+|.|||+|--|..+|..|+++|++|+++++++..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 7999999999999999999999999999987653
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.017 Score=47.51 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=36.0
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
||+.|.|+ |.+|.+++..|++.|++|++.+|++++++.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 89999987 999999999999999999999999877765543
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.019 Score=50.56 Aligned_cols=63 Identities=22% Similarity=0.386 Sum_probs=43.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHC-CCcc-----cCC---HHHHHhhCCEEEEe
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-GATV-----GGS---PAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~-g~~~-----~~~---~~~~~~~~dvvii~ 63 (291)
|||.|.|+ |.+|+.++..|.+. |++|++++|+.++...+... ++.+ .++ ..++++++|+||-+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 68999996 99999999999876 69999999876554444322 2221 111 22455678988854
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.056 Score=53.28 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=65.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||+|||+|.+|+.++..|+..|. +++++|.+.=....+..+ |...+....+.++ +.++-|.+.+..- .
T Consensus 334 rVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I-~ 412 (989)
T PRK14852 334 RVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGV-A 412 (989)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCC-C
Confidence 79999999999999999999995 688888764333333332 2211222222222 4555555553311 1
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCH-HHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDH-ETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
++.+ +++ ++.-++|||+..... .....+.....+.++.++.+.+.|
T Consensus 413 ~en~---~~f---l~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 413 AETI---DAF---LKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred HHHH---HHH---hhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 1111 122 233478888776533 333455555566788888666443
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.076 Score=48.77 Aligned_cols=108 Identities=10% Similarity=0.057 Sum_probs=68.3
Q ss_pred CeEEEEec----------ChhhHHHHHHHHhCCCcEEEEcCCcchhHH--HHH--------------------CCCcccC
Q 022834 1 MEVGFLGL----------GIMGKAISMNLLRNGFKVTVWNRTLSKCDE--LVA--------------------HGATVGG 48 (291)
Q Consensus 1 mkI~iIG~----------G~mG~~la~~l~~~g~~V~~~~r~~~~~~~--l~~--------------------~g~~~~~ 48 (291)
.||+|+|+ .+-...++..|.+.|.+|.+||.--...+. ... .++...+
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW 404 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence 37899997 456889999999999999999986433221 110 0234456
Q ss_pred CHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 49 SPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 49 ~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
+..++++++|+|++++..+ .++..-. +.+.+.+.+..+|+|.-+.... +.+.+.|+.|..
T Consensus 405 ~~~~a~~~aD~vvi~t~~~-ef~~l~~--~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~ 464 (473)
T PLN02353 405 DAYEATKGAHGICILTEWD-EFKTLDY--QKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYS 464 (473)
T ss_pred CHHHHhcCCCEEEECCCCh-HhcccCH--HHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEE
Confidence 7778899999999999554 3333210 2333334344589998777532 122344777764
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.011 Score=53.38 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=31.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~ 34 (291)
|||.|||+|--|.++|..|+++|+ +|+++++.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 799999999999999999999985 9999998765
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.034 Score=45.93 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=32.9
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
+|.|.|+ |.+|..++..|.++|++|++.+|++++.+.+
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 6888875 9999999999999999999999997765543
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.023 Score=53.57 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=47.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc---------------------chhHHHHHCCCccc------C--CHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL---------------------SKCDELVAHGATVG------G--SPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~---------------------~~~~~l~~~g~~~~------~--~~~ 51 (291)
.+|.|||+|..|...+..|++.|++|+++++.+ ...+.+.+.|+.+. . +.+
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~ 217 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLE 217 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCHH
Confidence 379999999999999999999999999998643 22334455565321 1 123
Q ss_pred HHHhhCCEEEEecCC
Q 022834 52 EVIKKCTITIGMLAD 66 (291)
Q Consensus 52 ~~~~~~dvvii~vp~ 66 (291)
+.....|+||+++..
T Consensus 218 ~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 218 QLEGEFDAVFVAIGA 232 (564)
T ss_pred HHHhhCCEEEEeeCC
Confidence 334468999999854
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.047 Score=47.26 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=45.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCc-EEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
++.|+|+|.+|...+..+...|.+ |.+.++++++++...+.. +.+..++.-...|++|-|+..+..+...+
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~~~~~~~~ 218 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDPSLIDTLV 218 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCHHHHHHHH
Confidence 588999999999998887778987 556687776665443322 11111111234788888886654455544
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.033 Score=47.11 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=62.4
Q ss_pred eEEE-EecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGF-LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~i-IG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+++ -|+|.+|..-+..|...|..|++-..+|-.+-+..=+|.+++ +.+|+.++.|+++.++.... ++. .+-
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTGc~d----ii~--~~H 287 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTGCKD----IIT--GEH 287 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccCCcc----hhh--HHH
Confidence 4554 499999999999999999999999888765544444577765 78899999999998885422 221 122
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
....+.+.+|+++.-.
T Consensus 288 ~~~mk~d~IvCN~Ghf 303 (434)
T KOG1370|consen 288 FDQMKNDAIVCNIGHF 303 (434)
T ss_pred HHhCcCCcEEeccccc
Confidence 3345567777765543
|
|
| >COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.27 Score=41.30 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=36.3
Q ss_pred CeEEEEecChhhHHHHHHHH-hCCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLGIMGKAISMNLL-RNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~v 64 (291)
|++.++|.|++|....+.|. +.+++++ .|+++.++.- .+..|+...+|..+++.
T Consensus 3 ~~vvqyGtG~vGv~air~l~akpe~elvgawv~s~ak~G----------kdlgelagl~dlgV~a~ 58 (350)
T COG3804 3 LRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAAKSG----------KDLGELAGLPDLGVIAT 58 (350)
T ss_pred ceeEEeccchHHHHHHHHHHcCCCCceEEEEecCccccc----------ccHHHhcCCCCceeEee
Confidence 57889999999996666655 4599966 6899877653 24445555555444443
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.012 Score=52.86 Aligned_cols=33 Identities=33% Similarity=0.621 Sum_probs=31.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
++|.|||+|..|..+|..|+++|++|+++++.+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~ 35 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAP 35 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCc
Confidence 479999999999999999999999999999973
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.05 Score=46.24 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=33.9
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
+|.|.|+ |.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 6 ~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 6 TWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred EEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 4777765 999999999999999999999999877665543
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.04 Score=45.43 Aligned_cols=38 Identities=29% Similarity=0.314 Sum_probs=32.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
+|.|+|+ |.+|..++..|+++|++|++.+|++++.+.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA 46 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence 5778875 9999999999999999999999988766554
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.041 Score=45.73 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=33.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
++|.|.|+ |.+|..++..|.+.|++|.+.+|++++.+.+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEAREL 47 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 35778875 9999999999999999999999988766554
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.053 Score=46.11 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=35.0
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~ 42 (291)
+|.|.|+ |.+|..++..|++.|++|++.+|++++.+.+.+.
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 4677777 9999999999999999999999998877766543
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.026 Score=56.23 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=48.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc---------------------hhHHHHHCCCccc--------CCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~~ 51 (291)
.||+|||+|.-|.+-|..|++.||+|+++++.+. ..+.+.+.|+.+. -+.+
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~~ 386 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLE 386 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeHH
Confidence 3899999999999999999999999999987642 1123344455421 2455
Q ss_pred HHHh-hCCEEEEecCC
Q 022834 52 EVIK-KCTITIGMLAD 66 (291)
Q Consensus 52 ~~~~-~~dvvii~vp~ 66 (291)
++.+ ..|.||+++..
T Consensus 387 ~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 387 DLKAAGFWKIFVGTGA 402 (944)
T ss_pred HhccccCCEEEEeCCC
Confidence 6554 58999999843
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.015 Score=51.93 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=32.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
|+|.|||.|..|.++|..|+++|++|+++++.++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 47999999999999999999999999999987653
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.041 Score=45.81 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=32.4
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
++.|.|+ |.+|..+++.|++.|++|++.+|+++..+.+
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 5778876 9999999999999999999999987655443
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.014 Score=52.28 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=31.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
++|.|||+|-.|..+|..|+++|++|+++++.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4899999999999999999999999999998754
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.024 Score=47.40 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=34.7
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
+|.|.|+ |.+|..++..|.++|++|++.+|++++.+.+.+
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS 44 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh
Confidence 6888988 999999999999999999999999877665543
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.045 Score=45.79 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=32.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
+|.|.|+ |.+|..++..|++.|++|++.+|+++..+.+
T Consensus 7 ~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~ 45 (258)
T PRK07890 7 VVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEV 45 (258)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 5667764 9999999999999999999999987765544
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.03 Score=49.48 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=33.4
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
|||.|.| +|.+|+.+++.|.+.|++|++.+|++++.+.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHL 50 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence 7899998 59999999999999999999988877655443
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.21 Score=49.37 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=69.4
Q ss_pred eEEEEecChhhHHH-HHHHHhCCCcEEEEcCCcc-hhHHHHHCCCcccC-CHHHHHhhCCEEEEec--C-CHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKAI-SMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGML--A-DPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~l-a~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~~dvvii~v--p-~~~~~~~v~~ 75 (291)
+|.|||.|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.|+.+.. ...+.+.++|+||+.- | +...+.....
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~~ 85 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAKS 85 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHHH
Confidence 49999999999997 9999999999999997542 34456666776532 2334556789888653 1 2122222210
Q ss_pred -c-----cCccccc-cCC-CcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 76 -D-----KGGVLEQ-ICP-GKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 76 -~-----~~~l~~~-l~~-~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
+ ..++... .+. ..+-|.-|++...+..-+...+...|.
T Consensus 86 ~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 86 RGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 0 0012111 222 234565666777777777788877654
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.24 Score=45.23 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=66.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch--hHHHHHCCCcccC--CHHHHHhhCCEEEEec--C-CHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVAHGATVGG--SPAEVIKKCTITIGML--A-DPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~--~~~l~~~g~~~~~--~~~~~~~~~dvvii~v--p-~~~~~~~v~ 74 (291)
+|.|+|.|..|.+.++.|.+.|++|+++|..+.. .+.+ +.|+.+.. ...+.+++.|++|..- | +...+....
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 86 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSAAA 86 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHHHHH
Confidence 6999999999999999999999999999965432 2334 33665532 2334456778665543 1 212222221
Q ss_pred hc------cCccccc-cCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE
Q 022834 75 FD------KGGVLEQ-ICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 75 ~~------~~~l~~~-l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
.. ..++... .....+-|.-|++...+..-+.+.+...|..+
T Consensus 87 ~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 134 (438)
T PRK03806 87 DAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKV 134 (438)
T ss_pred HCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCE
Confidence 10 0012111 22223446566677777777788887765543
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.029 Score=47.37 Aligned_cols=64 Identities=23% Similarity=0.238 Sum_probs=51.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-------cCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvvii~vp 65 (291)
|+|.|.|+ |.+|..+...|.++|++|.+..|++++...+. .++.+ ..+....++..|.++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 78999965 99999999999999999999999999988877 44433 2344455677888888876
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.044 Score=45.77 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=33.4
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+|.|.| .|.+|..++..|.+.|++|.+.+|++++.+.+.
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 577887 599999999999999999999999987765543
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.022 Score=50.06 Aligned_cols=89 Identities=15% Similarity=0.224 Sum_probs=52.8
Q ss_pred CeEEEEec-ChhhHHHHHHHH-hCCCc---EEEEcC--CcchhHHHHHCCCcccCC-HHHHHhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLL-RNGFK---VTVWNR--TLSKCDELVAHGATVGGS-PAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~-~~g~~---V~~~~r--~~~~~~~l~~~g~~~~~~-~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
|||+|+|+ |.+|..|...|. +..++ +.++.. +..+.-.+......+.+- ..+...+.|++|.|.+. ...++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~-~~s~~ 79 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGG-DYTNE 79 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCH-HHHHH
Confidence 68999998 999999999999 66665 333332 211211121112222211 11245689999999955 44444
Q ss_pred HHhccCccccccCCC--cEEEEcCCC
Q 022834 73 VVFDKGGVLEQICPG--KGYIDMSTV 96 (291)
Q Consensus 73 v~~~~~~l~~~l~~~--~~vv~~s~~ 96 (291)
+. .. ....| ..|||.|+.
T Consensus 80 ~~---p~---~~~aG~~~~VIDnSSa 99 (366)
T TIGR01745 80 IY---PK---LRESGWQGYWIDAASS 99 (366)
T ss_pred HH---HH---HHhCCCCeEEEECChh
Confidence 44 22 23466 678988764
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.21 Score=42.24 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=62.9
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEE--cCCc--chhHHHHHCCCcc------cCCHHHHHhh-CC-EEEEecCCHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVW--NRTL--SKCDELVAHGATV------GGSPAEVIKK-CT-ITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~--~r~~--~~~~~l~~~g~~~------~~~~~~~~~~-~d-vvii~vp~~~ 68 (291)
||.|.|+ |+||...+..+.+.++++... ++.. +....+...++++ ..+++++... +| ++|=.+ .|.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT-~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT-HPS 80 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC-ChH
Confidence 7899998 999999999988888887653 3321 1222233235555 5677777766 88 555555 666
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEEEcc
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.+.+.+ +.+ +..+..+|.-+|+. ....+++. ....+..+-+|
T Consensus 81 ~~~~n~---~~~---~~~gv~~ViGTTG~~~~~~~~l~---~~~~i~~l~ap 123 (275)
T TIGR02130 81 AVNDNA---AFY---GKHGIPFVMGTTGGDREALAKLV---ADAKHPAVIAP 123 (275)
T ss_pred HHHHHH---HHH---HHCCCCEEEcCCCCCHHHHHHHH---HhcCCCEEEEC
Confidence 666665 222 33445555555553 44333332 22234444444
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.044 Score=45.38 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=31.9
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
++.|.|. |.+|..++..|.++|++|++.+|++++.+.+
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4667764 9999999999999999999999988765544
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.096 Score=43.78 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=30.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
++-|+|+|..+.+++......||+|+++|.+++
T Consensus 102 ~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 102 HVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred EEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 688999999999999999999999999987655
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.023 Score=49.03 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=33.6
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDE 38 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 38 (291)
|+|.|.| +|-+|+.++..|.++||+|.+.+|.......
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~ 39 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDP 39 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccc
Confidence 6789999 5999999999999999999999998766543
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.054 Score=45.44 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=33.8
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+++.|+|+ |.+|..++..|+++|++|++.+|+++..+.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 52 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATA 52 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36888866 99999999999999999999999877665543
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.014 Score=51.99 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=30.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|||.|.|. |.+|..++..|.+.||+|++.+|..
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 78999987 9999999999999999999999854
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.068 Score=45.23 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=33.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+|.|.|+ |.+|..++..|++.|++|.+.+|++++.+.+.
T Consensus 7 ~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 7 VVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 5677776 99999999999999999999999988776543
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.016 Score=52.28 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=31.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
++|.|||+|..|.++|..|+++|++|+++++.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 3799999999999999999999999999998754
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.091 Score=43.96 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=33.2
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+|.|+|+ |.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 5778877 99999999999999999999999877655443
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.11 Score=45.48 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=37.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCc-EEEEcCCcchhHHHHHCCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGA 44 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g~ 44 (291)
+|.|+|+|.+|...+..+...|.+ |++.++++++.+.+.+.|+
T Consensus 166 ~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 166 TVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 688999999999999988889988 9999999888877766664
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.016 Score=49.66 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=38.0
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEec
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGML 64 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~v 64 (291)
|||.|+| .|.+|.++...|.+.|++|..++|+.-. +.-.....+.++ ++|+||-|.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~d--------l~d~~~~~~~~~~~~pd~Vin~a 59 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLD--------LTDPEAVAKLLEAFKPDVVINCA 59 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS---------TTSHHHHHHHHHHH--SEEEE--
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcC--------CCCHHHHHHHHHHhCCCeEeccc
Confidence 9999999 5999999999999999999999876211 111112233333 479999886
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.089 Score=46.25 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=43.1
Q ss_pred eEEEEecChhhHHHHHHHHh-C-CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecC
Q 022834 2 EVGFLGLGIMGKAISMNLLR-N-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp 65 (291)
++.|+|+|.+|...+..+.+ . +.+|++.++++++.+.+...+... ...+..+ ..|+||-|+.
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G 231 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVG 231 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCC
Confidence 58899999999998887775 4 367999999988887765534321 1112222 3688888886
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.078 Score=43.58 Aligned_cols=82 Identities=22% Similarity=0.197 Sum_probs=50.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+|.|.|. |.+|..++..|+++|++|++.+|++++.....+. .. ....+++..-+.+...++.++ +++
T Consensus 9 ~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~--~~~~~~~~~D~~~~~~~~~~~---~~~ 76 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPG-------VP--ADALRIGGIDLVDPQAARRAV---DEV 76 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHH-------Hh--hcCceEEEeecCCHHHHHHHH---HHH
Confidence 5778865 9999999999999999999999987665433211 00 012334444444555666665 444
Q ss_pred ccccCCCcEEEEcCC
Q 022834 81 LEQICPGKGYIDMST 95 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~ 95 (291)
.....+-+.|++...
T Consensus 77 ~~~~~~~d~vi~~ag 91 (239)
T PRK12828 77 NRQFGRLDALVNIAG 91 (239)
T ss_pred HHHhCCcCEEEECCc
Confidence 333333355665443
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.065 Score=44.82 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=32.0
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
+|.|.|+ |.+|..++..|++.|++|++++|++++.+.+
T Consensus 13 ~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~ 51 (256)
T PRK06124 13 VALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAA 51 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 5667765 9999999999999999999999987765544
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.039 Score=45.90 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=44.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHH-HH--CCC------cccCC-HHHHHhhCCEEEEecC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL-VA--HGA------TVGGS-PAEVIKKCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l-~~--~g~------~~~~~-~~~~~~~~dvvii~vp 65 (291)
||.|+|.|.+|.+.+..+..+|. ++.+.|.++++++-- -+ .|. +++.+ ......+++++|+...
T Consensus 22 KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~S~lvIiTAG 97 (332)
T KOG1495|consen 22 KITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSANSKLVIITAG 97 (332)
T ss_pred eEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCCCcEEEEecC
Confidence 89999999999999999988874 799999998876521 11 121 11111 2234467899988874
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.1 Score=45.92 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=36.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 44 (291)
+|.|+|+|.+|...+..+...|.+|++.++++++.+.+.+.|+
T Consensus 169 ~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 5889999999999999988899999999999888877765554
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.077 Score=46.41 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=49.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHH-HHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAE-VIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~-~~~~~dvvii~vp~~~~~~~ 72 (291)
++.|.|+|.+|...+......|.+|+..++++++.+.+.+.|+...-+..+ ..+..|+++.+++.+..+..
T Consensus 168 ~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~~ 239 (329)
T TIGR02822 168 RLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGLVPP 239 (329)
T ss_pred EEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHHHHH
Confidence 578999999998888777778888988999999988888878653322111 11245777777655443333
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.056 Score=45.50 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=32.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
++.|.|. |.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 12 ~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 51 (263)
T PRK07814 12 VAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVA 51 (263)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5667765 68999999999999999999999887665543
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.088 Score=44.53 Aligned_cols=93 Identities=23% Similarity=0.245 Sum_probs=59.2
Q ss_pred eEEEEecChhhHHHHHHHHhC----CC-------cEEEEcCCc----c--hhH----HHHHCCC-cccCCHHHHHh--hC
Q 022834 2 EVGFLGLGIMGKAISMNLLRN----GF-------KVTVWNRTL----S--KCD----ELVAHGA-TVGGSPAEVIK--KC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~----g~-------~V~~~~r~~----~--~~~----~l~~~g~-~~~~~~~~~~~--~~ 57 (291)
||.|+|+|.-|..++..|... |. +++++|+.- + .+. .+....- ....++.|+++ ++
T Consensus 27 ~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~p 106 (279)
T cd05312 27 RILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKP 106 (279)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCC
Confidence 799999999999999999875 75 688888751 0 011 1222111 13457888888 77
Q ss_pred CEEEEecC-CHHHHHHHHhccCccccccCCCcEEEEcCCCCH
Q 022834 58 TITIGMLA-DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 58 dvvii~vp-~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
|++|=+.. ...-.++++ +.+..+. +..+|.-+||-.|
T Consensus 107 tvlIG~S~~~g~ft~evv---~~Ma~~~-~~PIIFaLSNPt~ 144 (279)
T cd05312 107 TVLIGLSGVGGAFTEEVV---RAMAKSN-ERPIIFALSNPTS 144 (279)
T ss_pred CEEEEeCCCCCCCCHHHH---HHHHhcC-CCCEEEECCCcCC
Confidence 87776552 122344555 4444443 6678888888765
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.057 Score=45.14 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=32.6
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
++.|.|+ |.+|.+++..|++.|++|.+.+|++++.+.+.
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 3556676 89999999999999999999999887766543
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.062 Score=47.10 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=33.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
++.|.|+ |.+|.+++..|++.|++|++.+|++++.+.+.
T Consensus 9 ~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~ 48 (330)
T PRK06139 9 VVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVA 48 (330)
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 4666676 89999999999999999999999988776543
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.058 Score=45.18 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=32.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
++.|.|+ |.+|..++..|+++|++|.+.+|+++..+.+.
T Consensus 9 ~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (262)
T PRK13394 9 TAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVA 48 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 4667766 99999999999999999999999887665543
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.055 Score=45.37 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=33.5
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|+|.|.| .|.+|..++..|+++|++|++.+|++++.+.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 43 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFA 43 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3566776 699999999999999999999999987766544
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.072 Score=48.11 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=29.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC------cEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF------KVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~------~V~~~~r~~~ 34 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.-
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNI 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCc
Confidence 68999999999999999999997 7999987643
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.18 Score=46.33 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=64.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCc-ccCCHHHHHhhCCEEEEec--C-CHHHHHHHHhc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT-VGGSPAEVIKKCTITIGML--A-DPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~-~~~~~~~~~~~~dvvii~v--p-~~~~~~~v~~~ 76 (291)
||+|+|+|.-|.+.++.|.+ |.+|+++|.+++....+.+. ... ......+.+.++|+||+.- | +...+......
T Consensus 8 ~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a~~~ 86 (454)
T PRK01368 8 KIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIAKNF 86 (454)
T ss_pred EEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHHHHC
Confidence 79999999999999999995 99999999654433322221 111 1122234456789887652 1 21222222100
Q ss_pred ------cCccc-cccCC-CcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 77 ------KGGVL-EQICP-GKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 77 ------~~~l~-~~l~~-~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+-++. ....+ ..+-|.-|++...+..-+.+.+...|....
T Consensus 87 gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~ 134 (454)
T PRK01368 87 NIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYP 134 (454)
T ss_pred CCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeE
Confidence 00111 11212 234455566777777777788877665443
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.11 Score=46.89 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=65.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
+|+|||+|.+|+.++.+|...|. .++++|.+.-....+... |...+....+.+. +.|+-+.+... ..
T Consensus 22 ~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e--~~ 99 (425)
T cd01493 22 HVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEE--SP 99 (425)
T ss_pred eEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEec--cc
Confidence 79999999999999999999996 699998653222222211 1111111111121 46766655532 12
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
++++ ......+.+-++||. +.........+.+.+.+.++.++.+...|
T Consensus 100 ~~ll---~~~~~f~~~fdiVI~-t~~~~~~~~~L~~~c~~~~iPlI~~~s~G 147 (425)
T cd01493 100 EALL---DNDPSFFSQFTVVIA-TNLPESTLLRLADVLWSANIPLLYVRSYG 147 (425)
T ss_pred chhh---hhHHHHhcCCCEEEE-CCCCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 2222 111122334456664 44455566667777777788777655443
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.14 Score=42.68 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=57.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-----------cEEEEcCCc-------c--hh-HHH--HHCCCcccCCHHHHHh--h
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-----------KVTVWNRTL-------S--KC-DEL--VAHGATVGGSPAEVIK--K 56 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-----------~V~~~~r~~-------~--~~-~~l--~~~g~~~~~~~~~~~~--~ 56 (291)
||.|+|+|.-|..++..|...+. +++++|+.- + .. +.+ ....-....++.|+++ +
T Consensus 27 riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~k 106 (254)
T cd00762 27 KVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAK 106 (254)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhC
Confidence 79999999999999999987542 677777641 1 11 111 0111123458888888 7
Q ss_pred CCEEEEecC-CHHHHHHHHhccCccccccCCCcEEEEcCCCCH
Q 022834 57 CTITIGMLA-DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 57 ~dvvii~vp-~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
+|++|=... ...-.++++ +.+..+. +..+|.-+||-.|
T Consensus 107 ptvlIG~S~~~g~ft~evv---~~Ma~~~-~~PIIFaLSNPt~ 145 (254)
T cd00762 107 PDFLIGVSRVGGAFTPEVI---RAXAEIN-ERPVIFALSNPTS 145 (254)
T ss_pred CCEEEEeCCCCCCCCHHHH---HHHhhcC-CCCEEEECCCcCC
Confidence 887765542 222344555 4444443 6678888888765
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.33 Score=44.75 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=64.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc-hh---HHHHHCCCccc-CCHHHHHhhCCEEEEec--C-CHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KC---DELVAHGATVG-GSPAEVIKKCTITIGML--A-DPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~---~~l~~~g~~~~-~~~~~~~~~~dvvii~v--p-~~~~~~~v 73 (291)
||+|+|+|.-|.+.++.|.+.|.+|+++|.++. .. ..+.+.+.... ....+.+.++|+||..- | +...+...
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~~~~a 89 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPEALAA 89 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHHHHHH
Confidence 799999999999999999999999999995432 22 23433322221 12234456789888763 2 21222222
Q ss_pred Hhc-c---C--cc-ccc-cC-----CCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 74 VFD-K---G--GV-LEQ-IC-----PGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 74 ~~~-~---~--~l-~~~-l~-----~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
... . . ++ ... .. ...+-|.-|++...+..-+.+.+...+.
T Consensus 90 ~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 142 (468)
T PRK04690 90 AARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGH 142 (468)
T ss_pred HHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 100 0 0 11 111 11 1234455556677777777777776653
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.023 Score=50.58 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=31.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+|.|||+|.-|..+|..|++.|++|++++++++
T Consensus 6 ~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 799999999999999999999999999998754
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.059 Score=44.78 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=33.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
+|.|+|+ |.+|..++..|++.|++|++.+|++++.+.+
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~ 45 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERV 45 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 6788875 9999999999999999999999998766554
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.071 Score=44.56 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=32.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
+|.|.|+ |.+|..++..|++.|++|.+.+|++++.+.+
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 50 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAA 50 (255)
T ss_pred EEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 5777775 9999999999999999999999987765543
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.048 Score=48.65 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=43.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhH-HHHHCCCc-ccCC---HHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD-ELVAHGAT-VGGS---PAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~-~l~~~g~~-~~~~---~~~~~~~~dvvii 62 (291)
|+|+|||.|..|..++....+.|++|.++|.+++... .+.+.-+. ..++ ..++++.+|+|..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 4699999999999999999999999999998765432 22222111 1223 3456678897644
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 291 | ||||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 1e-126 | ||
| 3pdu_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 4e-83 | ||
| 3pef_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 2e-82 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 2e-73 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 4e-33 | ||
| 1vpd_A | 299 | X-Ray Crystal Structure Of Tartronate Semialdehyde | 1e-29 | ||
| 2gf2_A | 296 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 3e-25 | ||
| 2i9p_A | 319 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 4e-25 | ||
| 1yb4_A | 295 | Crystal Structure Of The Tartronic Semialdehyde Red | 2e-23 | ||
| 4dll_A | 320 | Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re | 9e-22 | ||
| 4gbj_A | 297 | Crystal Structure Of Nad-Binding 6-Phosphogluconate | 2e-18 | ||
| 3qha_A | 296 | Crystal Structure Of A Putative Oxidoreductase From | 2e-15 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 3e-14 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 6e-13 | ||
| 3obb_A | 300 | Crystal Structure Of A Possible 3-Hydroxyisobutyrat | 1e-11 | ||
| 3q3c_A | 299 | Crystal Structure Of A Serine Dehydrogenase From Ps | 1e-11 | ||
| 3g0o_A | 303 | Crystal Structure Of 3-Hydroxyisobutyrate Dehydroge | 5e-08 | ||
| 3fwn_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 2e-07 | ||
| 2zya_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 2e-07 | ||
| 2zyg_A | 480 | Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas | 5e-07 | ||
| 2w8z_A | 470 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 7e-07 | ||
| 2w90_A | 471 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 7e-07 | ||
| 2iyp_A | 473 | Product Rup Length = 473 | 8e-04 | ||
| 2iz0_A | 474 | Pex Inhibitor-Home Data Length = 474 | 8e-04 | ||
| 2iyo_A | 472 | Structural Characterization Of A Bacterial 6pdh Rev | 8e-04 |
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299 | Back alignment and structure |
|
| >pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296 | Back alignment and structure |
|
| >pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319 | Back alignment and structure |
|
| >pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295 | Back alignment and structure |
|
| >pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320 | Back alignment and structure |
|
| >pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate Dehydrogenase From Dyadobacter Fermentans Length = 297 | Back alignment and structure |
|
| >pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 Length = 300 | Back alignment and structure |
|
| >pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From Pseudomonas Aeruginosa Pao1 In Complex With Nad Length = 299 | Back alignment and structure |
|
| >pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase (Ygbj) From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
| >pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480 | Back alignment and structure |
|
| >pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470 | Back alignment and structure |
|
| >pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471 | Back alignment and structure |
|
| >pdb|2IYP|A Chain A, Product Rup Length = 473 | Back alignment and structure |
|
| >pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data Length = 474 | Back alignment and structure |
|
| >pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals Aspects Of Specificity, Mechanism And Mode Of Inhibition Length = 472 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 291 | |||
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 1e-118 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 1e-118 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 1e-118 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 1e-116 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 1e-104 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 4e-85 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 1e-82 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 2e-81 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 1e-80 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 2e-80 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 1e-78 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 5e-78 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 6e-67 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 3e-64 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 3e-57 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 3e-44 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 1e-36 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 2e-15 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 9e-15 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 9e-13 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 2e-11 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 3e-11 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 3e-11 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 8e-11 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 1e-10 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 3e-10 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 3e-10 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 4e-07 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 8e-07 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 1e-06 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 9e-06 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 7e-05 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 8e-05 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 9e-05 |
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 341 bits (876), Expect = e-118
Identities = 229/285 (80%), Positives = 257/285 (90%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V SPAEVIKKC T
Sbjct: 22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 81
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 82 IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 141
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQL+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG M
Sbjct: 142 SGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSM 201
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN FSEGLVLA+KSGL TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDM
Sbjct: 202 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 261
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
RLALALGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV E VK
Sbjct: 262 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 341 bits (877), Expect = e-118
Identities = 143/283 (50%), Positives = 193/283 (68%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDIT 90
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPV
Sbjct: 91 FACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPV 150
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SG++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G
Sbjct: 151 SGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSF 210
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
M T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+
Sbjct: 211 MATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDL 270
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEV 283
RLA+ALGD P+AAAANE +K+A++L DND SAV+
Sbjct: 271 RLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 313
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 339 bits (871), Expect = e-118
Identities = 160/285 (56%), Positives = 202/285 (70%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+ GF+GLGIMG A++ NL++ G VT+WNR+ K +EL A GA +P EV++ C +T
Sbjct: 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVT 61
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
MLADPAAA V F K GVLE I G+GY+DMSTVD TS +I A+ +KGG FLEAPV
Sbjct: 62 FAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPV 121
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE G L+IL+AG++ LYDEA+ +GKK LG+VG GA+MKLVVNM+MG M
Sbjct: 122 SGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGM 181
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
M F EGL L EK+GL +LDV+ G +ANPMF KG + N+APAFPLKH QKD+
Sbjct: 182 MACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDL 241
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
RLA+ALGD + +AAANE FK AR+ G GD DFSA+F+ +
Sbjct: 242 RLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 336 bits (863), Expect = e-116
Identities = 165/283 (58%), Positives = 199/283 (70%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
GFLGLGIMG ++ NL+R GF VTVWNR +KC LVA GA SPAEV C ITI
Sbjct: 4 YGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIA 63
Query: 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
MLADPAAA V F GVLE I G+GYIDMSTVD ETS I A+T++GG FLEAPVSG
Sbjct: 64 MLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSG 123
Query: 123 SKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMN 182
+K+PAE G L+IL+AG+++L+ +A A +GKK LGEVG GA+MKLVVNMIMG MM
Sbjct: 124 TKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMT 183
Query: 183 TFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRL 242
EG+ L GLD LL+VLD G +ANPMFKGKG +L + +FPLKH QKD+RL
Sbjct: 184 ALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRL 243
Query: 243 ALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285
A+ LGD + AA ANE+FK+AR+ G D DF+AVF V++
Sbjct: 244 AVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 304 bits (780), Expect = e-104
Identities = 54/294 (18%), Positives = 108/294 (36%), Gaps = 6/294 (2%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+V +GLG MG ++ LL+ G +V +WNR+ K LVA GA + S + T
Sbjct: 10 FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPAT 69
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I +L D A V+ G + + + +D +T + + + + GGH+++ +
Sbjct: 70 IFVLLDNHATHEVLGMPG--VARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMI 127
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
+ + + G++ +++ + L + FL V++
Sbjct: 128 VAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPW-DEALAFATVLHAHAFAA 186
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGG--IANPMFKGKGPTMLQSNY-APAFPLKHQQ 237
M TF E + ++ GL +L + + ++ L
Sbjct: 187 MVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQARLDVHA 246
Query: 238 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS 291
V P+ A + ++A ++G GD D +A + +
Sbjct: 247 DAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAREQEEG 300
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 4e-85
Identities = 88/287 (30%), Positives = 147/287 (51%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M+VGF+GLGIMGK +S NLL+ G+ + V +R +++A GA + + ++C +
Sbjct: 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVI 65
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML + V + G++E PG IDMS++ S +IS A+ +KG L+APV
Sbjct: 66 ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPV 125
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SG + A G L ++ G+KA++D+ + + G++G G KL +I+
Sbjct: 126 SGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALN 185
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
+ SE L LA K+G++P + + G + + K P ++ N+ P F + KD+
Sbjct: 186 IAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 245
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287
AL +P+ AA E + R+ G G++D SA+ + L
Sbjct: 246 ANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKL 292
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 1e-82
Identities = 82/287 (28%), Positives = 142/287 (49%), Gaps = 1/287 (0%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M++GF+GLGIMG +++NL R G ++ V DEL++ GA + +V + I
Sbjct: 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTTIG-PVADELLSLGAVNVETARQVTEFADII 62
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
M+ D V+F + G + GK +DMS++ + + ++ + G +L+APV
Sbjct: 63 FIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPV 122
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SG + A G L I+ GE+ ++D +++GK +G G+G K+ +I+
Sbjct: 123 SGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALN 182
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
+ SE LV A K+G DP + L G ++ + + G M+ + P F + QKD+
Sbjct: 183 IEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDL 242
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287
LAL A+++P A E F + G D SA+ + ++ +
Sbjct: 243 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALELM 289
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 2e-81
Identities = 92/288 (31%), Positives = 159/288 (55%), Gaps = 1/288 (0%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+++GF+GLG MGK +++NLL+ G V ++ + +VA GA + +V I
Sbjct: 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDII 64
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
L + +V+ GGVL G +DMS+V +++K+++ KG +++APV
Sbjct: 65 FTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPV 124
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SG + AE G L I+ +A++++ L+VIGK + +G+ G G +K+V N+++GC
Sbjct: 125 SGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCN 184
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPT-MLQSNYAPAFPLKHQQKD 239
M + +E LVL K GL P T+ +++ + + K ++ ++A F + Q KD
Sbjct: 185 MASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKD 244
Query: 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287
+ LAL G E V +P+ A A + F+ R++GLG D SAV +V + +
Sbjct: 245 LGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQM 292
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 1e-80
Identities = 80/293 (27%), Positives = 138/293 (47%), Gaps = 7/293 (2%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M VGF+GLG MG ++ NL+++G+ + +++ C E G V SPA+V +K
Sbjct: 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML A+ G+L+++ G ID ST+D S ++++ + G F++APV
Sbjct: 61 ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SG A +G L + G + + A L +G + G VG G K+ NM++
Sbjct: 121 SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAIS 180
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMFKGKGPTMLQSNYAPAFPL 233
M +E + L + GLDP+ L +L++ NP+ +NY F
Sbjct: 181 MIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT 240
Query: 234 KHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286
KD+ LA + + + A++ ++ + G DFS+VF+ +++
Sbjct: 241 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLRE 293
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 2e-80
Identities = 85/285 (29%), Positives = 138/285 (48%), Gaps = 2/285 (0%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
+ FLG G MG ++ L G+ + VWNRT ++ L A GAT+ + I +
Sbjct: 34 ITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVS 93
Query: 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
ML + A V+F + GV + PG ++DM+++ + + + + G L+ PVSG
Sbjct: 94 MLENGAVVQDVLFAQ-GVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSG 152
Query: 123 SKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMN 182
AE G LVI++ G+ A ++ ++ L V G +A +G G+G KL MI+G +
Sbjct: 153 GTVGAEQGTLVIMAGGKPADFERSLPLLKVFG-RATHVGPHGSGQLTKLANQMIVGITIG 211
Query: 183 TFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRL 242
+E L+ A K G D + + + G + + + G M++ ++AP L Q KDMR
Sbjct: 212 AVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQLKDMRN 271
Query: 243 ALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287
ALA E PI + + + GL D D S +F +
Sbjct: 272 ALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASR 316
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 238 bits (609), Expect = 5e-78
Identities = 68/289 (23%), Positives = 130/289 (44%), Gaps = 2/289 (0%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TVGGSPAEVIKKCTI 59
VG +GLG MG + + LR G + C L+A GA S E
Sbjct: 8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDA 67
Query: 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119
+ ++ + A V+F + GV + PG + ST+ + +I+ A+T+ + L+AP
Sbjct: 68 LVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAP 127
Query: 120 VSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEV-GNGAKMKLVVNMIMG 178
VSG A G++ ++++G +A + L+ + + + + G G+ +K++ ++ G
Sbjct: 128 VSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAG 187
Query: 179 CMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQK 238
+ +E + LA ++G+ + DV+ + MF+ + ++ +Y P + K
Sbjct: 188 VHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVK 247
Query: 239 DMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287
D+ L +P+A+ A F A + G G D SAV ++
Sbjct: 248 DLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 6e-67
Identities = 77/284 (27%), Positives = 127/284 (44%), Gaps = 12/284 (4%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+++G++GLG MG ++ + VTV++ + L GAT+ S A+V I
Sbjct: 16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIH 75
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I +L D A VV + PG ST+ T+++++R + ++ H ++APV
Sbjct: 76 ITVL-DDAQVREVVG---ELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPV 131
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SG A G+L + ++ +Y+ A GE G G +MKL NM+
Sbjct: 132 SGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTS 191
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVL-----DLGGIANPMFKGKGPTMLQSN--YAPAFPL 233
E + LAE +GLD + L V+ GG M + + N Y P
Sbjct: 192 YAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHT 251
Query: 234 KH-QQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDND 276
+ +KD+ LALALG+ +V +P+A A E + + +
Sbjct: 252 RGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEKE 295
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 3e-64
Identities = 65/287 (22%), Positives = 113/287 (39%), Gaps = 9/287 (3%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
V F+GLG MG ++ +L R VWNRT K + P E + + +
Sbjct: 4 VAFIGLGAMGYPMAGHLARRFP-TLVWNRTFEKALRHQEEFGSEA-VPLERVAEARVIFT 61
Query: 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
L V + + G ++D ++ + E S +++ + KG +L+APVSG
Sbjct: 62 CLPTTREVYEVA---EALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSG 118
Query: 123 SKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMN 182
AE G L ++ G + + L KK +G VG G +K + N ++ +
Sbjct: 119 GTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLW 177
Query: 183 TFSEGLVLAEKSGLDPRTLLDVLDLGGIAN--PMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
EGL+ K G+ L+V+ +L + F L KD+
Sbjct: 178 AAGEGLLALVKQGVSAEKALEVI-NASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDL 236
Query: 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287
+A+ + D P+ A E ++ A+ D D +++
Sbjct: 237 GIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERW 283
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 3e-57
Identities = 58/287 (20%), Positives = 100/287 (34%), Gaps = 16/287 (5%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVA--HGATVGGSPAEVIKKC 57
M++GF+G G AI+ L + G + ++ ++ A G + S AEV +C
Sbjct: 25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGEC 84
Query: 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117
+ ++ AAL V +C G Y D ++ I I+
Sbjct: 85 DVIFSLVT-AQAALEVA---QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQY 140
Query: 118 APVSGSKQPAETGQLV-ILSAGEKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLVVNM 175
A V+ G V ++ G+ A +A + G + L GEVG A +K+ +
Sbjct: 141 AAVAVMSAVKPHGHRVPLVVDGDGA--RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSA 198
Query: 176 IMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKH 235
++ + F E L AEK GL R L + + +++ N A H
Sbjct: 199 VLKGLEALFLEALAAAEKMGLADRVLASL--DASFPEHHLRDLALYLVERNLEHADRRAH 256
Query: 236 QQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 282
++ A V +A A + +
Sbjct: 257 ---ELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALKQRPGDVR 300
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 3e-44
Identities = 49/305 (16%), Positives = 106/305 (34%), Gaps = 26/305 (8%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCD------ELVAHGATVGGSPAEV 53
+ F+G G ++I+ L ++ ++ + A
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAG 84
Query: 54 IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113
I + + ++ AA +V + +ID+++V +T + AI + G
Sbjct: 85 IACADVVLSLVV-GAATKAVA---ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKG 140
Query: 114 HFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLV 172
F+E V P ++++ E LN +G + G + +K++
Sbjct: 141 SFVEGAVMARVPPYAEKVPILVAGRRAV---EVAERLNALGMNLEAVGETPGQASSLKMI 197
Query: 173 VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFP 232
++++ + E L AE++G+ R L V + ++ L +
Sbjct: 198 RSVMIKGVEALLIEALSSAERAGVTERILDSVQE--TFPGLDWRDVADYYLSRTFEHGAR 255
Query: 233 LKHQQKDMRLALALGDENAVSMPIAAAANEAFK------KARSLGLGDNDFSAVFEVVKD 286
+ +M A + ++ P++ AA E K + L + D V + +
Sbjct: 256 ---RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARR 312
Query: 287 LKRSS 291
L R S
Sbjct: 313 LARDS 317
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-36
Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 14/207 (6%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+ VGF+G G + + ++ L G +V S A V + E + C +
Sbjct: 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVV 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I + P AL G + I Y+D++ + ET S I G F++A +
Sbjct: 61 ISAVT-PGVALGAARRAGRHVRGI-----YVDINNISPETVRMASSLIEKGG--FVDAAI 112
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG-EVGNGAKMKLVVNMIMGC 179
GS + +I S + E LN G G E G+ + +K++ +
Sbjct: 113 MGSVRRKGADIRIIASGRD----AEEFMKLNRYGLNIEVRGREPGDASAIKMLRSSYTKG 168
Query: 180 MMNTFSEGLVLAEKSGLDPRTLLDVLD 206
+ E L A + GL+ +L++L+
Sbjct: 169 VSALLWETLTAAHRLGLEED-VLEMLE 194
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 2e-15
Identities = 30/219 (13%), Positives = 62/219 (28%), Gaps = 10/219 (4%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCT 58
+ +G G + ++ L R GF++ V++RT EL A AEV
Sbjct: 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAK 70
Query: 59 ITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118
+ I L D A A ++ G++E + + + +
Sbjct: 71 LYIVSLKDSAFA-ELL---QGIVEGKREEALMVHTAGSIPMNVWEGHVPHYGV--FYPMQ 124
Query: 119 PVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG 178
S ++ + A + + + + + + L
Sbjct: 125 TFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYDADS-EQRKSLHLAAVFTCN 183
Query: 179 CMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKG 217
+ ++ L +K L +L L
Sbjct: 184 FTNHMYALAAELLKKYNLPFDVMLP-LIDETARKVHELE 221
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 9e-15
Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 22/224 (9%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M+VG +GLG+MG +++N+ GFKV V+NRT SK +E + A+ + T+
Sbjct: 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANAS-APFAGNLKAFETME 60
Query: 61 --IGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRAIT 109
L P AL +V + G +EQ+ G +D + + ++ +
Sbjct: 61 AFAASLKKPRKALILV--QAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLE 118
Query: 110 SKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKK-AFFLGE 162
+ G FL +SG ++ A G G ++++ EA +A G+ G
Sbjct: 119 AAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGS 177
Query: 163 VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206
G G+ +K+ N ++ + E + GL+ + VL+
Sbjct: 178 GGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLE 221
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 9e-13
Identities = 28/180 (15%), Positives = 56/180 (31%), Gaps = 18/180 (10%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+VG LG G ++++ L+ +GFKV V +R + L A V E + +
Sbjct: 29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQV-TFQEEAVSSPEVI 87
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAP 119
+A S + L GK +D+S + ++ +
Sbjct: 88 F--VAVFREHYSSLCSLSDQL----AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCT 141
Query: 120 VSGSKQ---------PAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKM 169
V + G + G + +G +G + + ++
Sbjct: 142 VVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDMGSLASAWEV 201
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 2e-11
Identities = 23/200 (11%), Positives = 58/200 (29%), Gaps = 13/200 (6%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTI 59
+ + F+G G + + + L++ +++ + +R++ + L + + + +
Sbjct: 3 LVLNFVGTGTLTRFF-LECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGV 61
Query: 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119
++ D + G + + S +I + H +
Sbjct: 62 VFVIVPDRYIKTVA--------NHLNLGDAVLVHCSGFL--SSEIFKKSGRASIHPNFSF 111
Query: 120 VSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC 179
S K Q+V G++ I K F + L +
Sbjct: 112 SSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS-EKKKAYHLAAVIASNF 170
Query: 180 MMNTFSEGLVLAEKSGLDPR 199
+ + GLD
Sbjct: 171 PVALAYLSKRIYTLLGLDEP 190
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 3e-11
Identities = 50/201 (24%), Positives = 98/201 (48%), Gaps = 22/201 (10%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++G +G+ +MG+ +++N+ G+ V+++NR+ K +E++A P +K+ +
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF---V 73
Query: 62 GMLADPAAALSVVFDKGG-----VLEQICPG--KG--YIDMSTVDHETSIKISRAITSKG 112
L P L +V K G ++ + P KG ID + +I+ +R ++++G
Sbjct: 74 ESLETPRRILLMV--KAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEG 131
Query: 113 GHFLEAPVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKK-AFFLGEVGN 165
+F+ VSG ++ A G I+ G+K Y+ I+A+ G+ ++G G
Sbjct: 132 FNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGA 190
Query: 166 GAKMKLVVNMIMGCMMNTFSE 186
G +K+V N I M +E
Sbjct: 191 GHYVKMVHNGIEYGDMQLIAE 211
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 3e-11
Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 23/133 (17%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M++G +GLG MG + L + G + V++ ++ L G S E K
Sbjct: 23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAK---- 78
Query: 61 IGMLADPAAALSVVFDKGG----VLEQICP--GKGYIDMSTVDH-----ETSIKISRAIT 109
L P +V +L+++ P I +D + I+ + +
Sbjct: 79 ---LVKPRVVWLMV--PAAVVDSMLQRMTPLLAANDI---VIDGGNSHYQDDIRRADQMR 130
Query: 110 SKGGHFLEAPVSG 122
++G +++ SG
Sbjct: 131 AQGITYVDVGTSG 143
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 8e-11
Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 24/223 (10%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
G +G+ +MGK +++N+ G+ V ++NRT SK +E+ + +++ +
Sbjct: 7 NFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEF---V 63
Query: 62 GMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRAITSKG 112
G L P + +V + G ++ + P G ID +++ + + G
Sbjct: 64 GSLEKPRRIMLMV--QAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSG 121
Query: 113 GHFLEAPVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKKA--FFLGEVG 164
+F+ VSG ++ A G ++ G+K YD E I+A K ++G G
Sbjct: 122 INFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANG 180
Query: 165 NGAKMKLVVNMIMGCMMNTFSEG-LVLAEKSGLDPRTLLDVLD 206
G +K+V N I M +E +L GL + + +
Sbjct: 181 AGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFE 223
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 1e-10
Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 19/179 (10%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
V G G GK++ + +L+ G+ V +R L+ GA V +E + +
Sbjct: 20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVS-SLLPRGAEV-LCYSEAASRSDVI 77
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
+LA + + L G+ ID+S S A V
Sbjct: 78 --VLAVHREHYDFLAELADSL----KGRVLIDVSNNQKMNQYPES-NAEYLAQLVPGAHV 130
Query: 121 SGSKQPAETGQL----------VILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKM 169
+ L V + + D + +G G + ++
Sbjct: 131 VKAFNTISAWALQSGTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQGSLVAAKEI 189
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 32/196 (16%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA---HGATVGG--SPAEVIKK 56
+ G +GL +MG+ + +N +GF V +NRT SK D +A G ++ G S + I K
Sbjct: 12 DFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISK 71
Query: 57 CTITIGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRA 107
L P + +V K G ++ QI P G ID S +
Sbjct: 72 -------LKRPRKVMLLV--KAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEE 122
Query: 108 ITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKK-AFFL 160
+ KG F+ + VSG ++ A G ++ G + + ++ISA G+ ++
Sbjct: 123 LKKKGILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNIFQSISA-KSDGEPCCEWV 180
Query: 161 GEVGNGAKMKLVVNMI 176
G G G +K+V N I
Sbjct: 181 GPAGAGHYVKMVHNGI 196
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 3e-10
Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 31/196 (15%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA---HGATVGG--SPAEVIKK 56
++ +GL +MG+ + +N+ +GF V +NRT+SK D+ +A G V G S E++ K
Sbjct: 4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSK 63
Query: 57 CTITIGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRA 107
L P + +V K G +E++ P G ID ++ +++ R
Sbjct: 64 -------LKKPRRIILLV--KAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRD 114
Query: 108 ITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKK-AFFL 160
+ KG F+ + VSG + A G ++ G K + + I+A G+ ++
Sbjct: 115 LKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWV 173
Query: 161 GEVGNGAKMKLVVNMI 176
G+ G G +K+V N I
Sbjct: 174 GDDGAGHFVKMVHNGI 189
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Length = 209 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 4e-07
Identities = 29/170 (17%), Positives = 47/170 (27%), Gaps = 7/170 (4%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
ME+ G G MG+AI N G +VT + V P +
Sbjct: 20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAV---PYPALAA---L 73
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
A VV + S+ E ++ + K + A
Sbjct: 74 AKQYATQLKGKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAAT 133
Query: 121 SGSKQPAETGQLVILSAGE-KALYDEAISALNVIGKKAFFLGEVGNGAKM 169
S Q +L AG + AL + G++ ++
Sbjct: 134 LQSGQVNGKEPTTVLVAGNDDSAKQRFTRALADSPLEVKDAGKLKRAREL 183
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 8e-07
Identities = 13/75 (17%), Positives = 27/75 (36%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M++ LG G +G+ ++ L G +VT+ R A ++ + +
Sbjct: 20 MKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHV 79
Query: 61 IGMLADPAAALSVVF 75
AA + +
Sbjct: 80 HLAAFADVAAGAELV 94
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-06
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 9/118 (7%)
Query: 3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
V LG G MG I+ + + + D L G + I + +
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPL-TDGDGWIDEADVV- 71
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119
+LA P + V + ++ ++ PG + + + RA +F+ P
Sbjct: 72 -VLALPDNIIEKVAE--DIVPRVRPGTIVLILDAAAPYAGVMPERA---DITYFIGHP 123
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 9e-06
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTI 59
M++G +G+G M AI L + ++ + +L + E+ S ++I + +
Sbjct: 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDL 63
Query: 60 TI 61
I
Sbjct: 64 VI 65
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Length = 450 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 7e-05
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 6 LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEV---------IKK 56
LG G + + L +G KVTV RTL +L A +V + K
Sbjct: 9 LGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAK 68
Query: 57 CTITIGML 64
+ I ++
Sbjct: 69 HDLVISLI 76
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* Length = 212 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 8e-05
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------GATVGGSPAE 52
M V LG G +GK +++ L G ++ V +R K + A + G +
Sbjct: 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNED 60
Query: 53 VIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDM 93
+ C I + A+ D +L + + +
Sbjct: 61 AAEACDI-AVLTIPWEHAIDTARDLKNILREKIVVSPLVPV 100
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Length = 275 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 9e-05
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 6 LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTI----- 59
LG G +A+ L++ G KV +WNRT K +L V SP EVI K +
Sbjct: 135 LGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTT 194
Query: 60 TIGMLADPAAALS--------VVFD 76
++G+ + + VV D
Sbjct: 195 SVGLKDEDPEIFNYDLIKKDHVVVD 219
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 291 | |||
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 100.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 100.0 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 100.0 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 100.0 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 100.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 100.0 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 100.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 100.0 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 100.0 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 100.0 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 100.0 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.98 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.97 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.97 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.97 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.97 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.97 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.96 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.95 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.94 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.94 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.94 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.94 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.93 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.93 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.93 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.93 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.93 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.93 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.92 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.92 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.92 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.91 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.91 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.91 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.9 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.89 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.89 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.89 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.89 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.88 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.88 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.87 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.87 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.86 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.86 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.85 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.85 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.83 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.83 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.82 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.82 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.82 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.8 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.8 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.8 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.8 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.78 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.64 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.77 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.75 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.75 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.74 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.72 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.71 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.7 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.69 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.66 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.65 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.49 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.46 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.43 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.42 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.41 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.41 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.39 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.39 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.37 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.37 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.36 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.36 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.35 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.34 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.33 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.33 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.32 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.32 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.32 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.31 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.31 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.31 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.31 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.31 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.29 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.29 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.29 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.25 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.24 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.24 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.23 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.22 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.19 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.19 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.17 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 99.16 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 99.15 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 99.15 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 99.14 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 99.13 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 99.1 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 99.1 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 99.1 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 99.06 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 99.06 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.04 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 99.02 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 99.02 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 99.0 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.99 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.98 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.97 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.97 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.95 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.95 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.95 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.94 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.92 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.9 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.9 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.89 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.88 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.88 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.87 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.87 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.87 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.86 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.86 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.85 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.85 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.85 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.84 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.83 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.83 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.82 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.81 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.81 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.8 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.79 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.79 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.78 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.78 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.77 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.76 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.75 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 98.74 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.73 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.73 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.72 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.71 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.71 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.7 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.69 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.69 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.68 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.68 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.68 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.67 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.66 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.66 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.66 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.65 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.63 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.63 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.62 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.62 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.62 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.62 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 98.6 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.6 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 98.58 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.58 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.57 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.56 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.55 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 98.55 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.54 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.54 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 98.54 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.54 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.52 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.52 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.51 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.5 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.49 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.49 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.48 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 98.48 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.48 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.47 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.47 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.46 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 98.46 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.45 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.44 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.44 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.44 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.44 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.44 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.43 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 98.42 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.41 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.4 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.4 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 98.39 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.39 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.39 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.37 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 98.37 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.36 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.36 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 98.36 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.36 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.35 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 98.33 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.33 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 98.33 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 98.32 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 98.32 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.32 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.31 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.31 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.31 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.3 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.3 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.29 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 98.29 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 98.28 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.26 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 98.25 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.24 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 98.24 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.22 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 98.21 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.2 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.2 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 98.15 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.15 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 98.14 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 98.14 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.14 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 98.12 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 98.12 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 98.1 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.08 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.07 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 98.03 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 98.03 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 98.03 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.03 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 98.02 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 98.01 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.98 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.97 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.97 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.96 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.94 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.91 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.91 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.91 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.9 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.9 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.9 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.9 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.89 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.84 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.84 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.83 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.83 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.82 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 97.82 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.82 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.82 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.81 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.79 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.78 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.77 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.76 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.74 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.74 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.74 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.72 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.72 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 97.69 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.67 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.67 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 97.65 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.63 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.62 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.62 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.6 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.57 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.56 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.5 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.49 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.47 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 97.42 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 97.41 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 97.41 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.4 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.39 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.38 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 97.35 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.33 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.32 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 97.3 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.25 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.22 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 97.19 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.18 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.18 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.13 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 97.13 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.13 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.12 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.11 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 97.11 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 97.1 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.09 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.08 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 97.08 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 97.08 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 97.07 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 97.07 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 97.01 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.01 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 97.01 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.0 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.0 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.98 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.97 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.97 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 96.95 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.95 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.93 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.93 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 96.92 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 96.91 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 96.9 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.88 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.88 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.87 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 96.87 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.84 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 96.84 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.84 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.83 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.83 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 96.82 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.81 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.81 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.76 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.73 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 96.72 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.71 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.7 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.69 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.66 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 96.66 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 96.66 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 96.65 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.64 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 96.64 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.63 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.63 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.61 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 96.61 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.6 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.6 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 96.59 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.58 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.56 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 96.56 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 96.54 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.53 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 96.52 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.52 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.49 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.49 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 96.49 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.48 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 96.47 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 96.46 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.46 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 96.45 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.45 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 96.44 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 96.41 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.41 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.41 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.39 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 96.39 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 96.36 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.34 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 96.32 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.31 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 96.28 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 96.27 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 96.26 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 96.25 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 96.25 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 96.25 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.22 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 96.21 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 96.2 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 96.19 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.17 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 96.17 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.16 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 96.16 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.15 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.12 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.11 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 96.11 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 96.11 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.1 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 96.1 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.07 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 96.06 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 96.06 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 96.05 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 96.04 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 96.03 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 96.03 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 96.03 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 96.02 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.01 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 95.99 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 95.97 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 95.96 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 95.93 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 95.93 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 95.92 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.92 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 95.91 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 95.91 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.9 | |
| 3a06_A | 376 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M | 95.9 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 95.9 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 95.9 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.89 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.89 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 95.88 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.87 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 95.87 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 95.86 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 95.86 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 95.85 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 95.85 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 95.85 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 95.84 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 95.84 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.84 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 95.83 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 95.83 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 95.81 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.81 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 95.81 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 95.81 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 95.79 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 95.79 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 95.78 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.78 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 95.78 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 95.78 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 95.77 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.76 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 95.76 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 95.76 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.74 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 95.74 |
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-55 Score=373.53 Aligned_cols=287 Identities=26% Similarity=0.449 Sum_probs=274.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
||||||+|.||..|+++|.++||+|++|||++++++.+.+.|.+..+|+.|+++++|+||+|+|++.++++|+++..++.
T Consensus 5 kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~ 84 (300)
T 3obb_A 5 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLL 84 (300)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSST
T ss_pred EEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998887899
Q ss_pred cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEeeC
Q 022834 82 EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG 161 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~~ 161 (291)
+.+++++++||+||+.|.+.+++.+.+.++|+.|+|+|++|++..+..|+++++++|+++.+++++++|+.+|.+++++|
T Consensus 85 ~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~~G 164 (300)
T 3obb_A 85 AHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG 164 (300)
T ss_dssp TSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccccc-------ccccCCCCCCcccc
Q 022834 162 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-------TMLQSNYAPAFPLK 234 (291)
Q Consensus 162 ~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~ 234 (291)
+.|.+..+|+++|.+...++++++|++.++++.|+|++.++++++.+++.++.++.+.| .+..++|.++|++.
T Consensus 165 ~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~~ 244 (300)
T 3obb_A 165 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ 244 (300)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccchHH
Confidence 99999999999999999999999999999999999999999999999888888877655 45677889999999
Q ss_pred cHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhh
Q 022834 235 HQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 288 (291)
Q Consensus 235 ~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 288 (291)
.+.||++++.+++++.|+++|+.+.+.++++.+.++|++++|+++++++|++..
T Consensus 245 l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~~~ 298 (300)
T 3obb_A 245 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPTQ 298 (300)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999997653
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-53 Score=362.25 Aligned_cols=284 Identities=27% Similarity=0.419 Sum_probs=265.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
||||||+|.||..|+.+|.++||+|++|||++++.+.+.+.|....+++.|+++++|+||+|+|++.++++++. ..+.
T Consensus 7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~--~~~~ 84 (297)
T 4gbj_A 7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFS--MELV 84 (297)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSC--HHHH
T ss_pred cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHH--HHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999998888874 3467
Q ss_pred cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEeeC
Q 022834 82 EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG 161 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~~ 161 (291)
+.+++++++||+||..|.+.+++.+.+.++|+.|+|+|++|++..+..|+++++++|+++.+++++++|+.++.++++++
T Consensus 85 ~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g~~i~~~g 164 (297)
T 4gbj_A 85 EKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFG 164 (297)
T ss_dssp HHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCSEEEECC
T ss_pred hhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhhCCeEEec
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCC-CcccccHHHH
Q 022834 162 E-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAP-AFPLKHQQKD 239 (291)
Q Consensus 162 ~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~d 239 (291)
+ +|.+..+|+++|.+...++++++|++.++++.|+|++.++++++.+...||+++.+.+++..++|.| +|++..+.||
T Consensus 165 ~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~~l~~KD 244 (297)
T 4gbj_A 165 DDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKD 244 (297)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCccccCCCCCCccchhHHHHHH
Confidence 6 8999999999999999999999999999999999999999999999999999999999999999986 8999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhh
Q 022834 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287 (291)
Q Consensus 240 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 287 (291)
++++.+++++.|+++|+.+.+.++++.+.++|++++|++++++.+++.
T Consensus 245 l~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~~ 292 (297)
T 4gbj_A 245 INLTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGASDD 292 (297)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=341.90 Aligned_cols=287 Identities=80% Similarity=1.222 Sum_probs=275.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|+++||+|++|||++++.+.+.+.|+....++.++++++|+||+|||++.++++++++.+++
T Consensus 22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l 101 (310)
T 3doj_A 22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGV 101 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999998999999877788
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.++++++||++|+..|.+.+.+.+.+.+.++.|+++|+++++..+..|+++++++++++.++.++++|+.+|.+++++
T Consensus 102 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~g~~~~~~ 181 (310)
T 3doj_A 102 LEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYL 181 (310)
T ss_dssp GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEEC
T ss_pred hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhCCCEEEe
Confidence 88888999999999999999999999888889999999999999999999998999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 240 (291)
++.+.+.++|+++|.+.+.++++++|++.++++.|++++++.+++..+...+++++++.+++..++|.++|.+..+.||+
T Consensus 182 g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl 261 (310)
T 3doj_A 182 GQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 261 (310)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999889999999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhh
Q 022834 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287 (291)
Q Consensus 241 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 287 (291)
+++.+++++.|+++|+++++.++++.+.++|+|++|++++++++++.
T Consensus 262 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 308 (310)
T 3doj_A 262 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFS 308 (310)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999864
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-49 Score=334.64 Aligned_cols=285 Identities=56% Similarity=0.920 Sum_probs=272.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|+++||+|++|||++++.+.+.+.|+...+++.++++++|+||+|||++.++++++++.+++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l 81 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV 81 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence 89999999999999999999999999999999999999999999999999999999999999999888999999877788
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.++++++|+++|+..|.+.+++.+.+.+.++.|+++|+++++..+..+++.++++++++.++.++++|+.+|.+++++
T Consensus 82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~ 161 (287)
T 3pef_A 82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHL 161 (287)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEEC
T ss_pred hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCeEEe
Confidence 88888999999999999999999999888889999999999999999999998999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 240 (291)
++.+.+.++|+++|.+.+.++.+++|++.++++.|++++++.+++..+...+|+++++.+++..++|.++|.+..+.||+
T Consensus 162 g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 241 (287)
T 3pef_A 162 GDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDL 241 (287)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHH
Q 022834 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285 (291)
Q Consensus 241 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 285 (291)
+++.+.+++.|+++|+++.++++++++.++|+|++|+++++++++
T Consensus 242 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pef_A 242 RLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286 (287)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHh
Confidence 999999999999999999999999999999999999999998875
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=333.80 Aligned_cols=285 Identities=58% Similarity=0.934 Sum_probs=272.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|+++||+|++|||++++.+.+.+.|+...+++.++++++|+||+|+|++.++++++++.+++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l 81 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV 81 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence 58999999999999999999999999999999999999998899999999999999999999999988999999877778
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.++++++|+++|++.|.+.+++.+.+.+.++.|+++|+++++.....|+++++++++++.++.++++|+.+|.+++++
T Consensus 82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~ 161 (287)
T 3pdu_A 82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHL 161 (287)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEEC
T ss_pred hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCEEEc
Confidence 88888999999999999999999999888889999999999999999999988999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 240 (291)
++.+.+.++|+++|.+.+.++.+++|++.++++.|++++++.+++..+...+++++++.+++..++|.++|.+..+.||+
T Consensus 162 g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 241 (287)
T 3pdu_A 162 GEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDL 241 (287)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHHhhccccccCCCCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999888999999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHH
Q 022834 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285 (291)
Q Consensus 241 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 285 (291)
+++.+.+++.|+++|+++++.++++++.++|+|++|+++++++++
T Consensus 242 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pdu_A 242 RLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286 (287)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999985
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=336.78 Aligned_cols=287 Identities=24% Similarity=0.412 Sum_probs=269.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-cCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+|.||..++..|+++||+|++|||++++.+.+.+.|... ..++.++++++|+||+|||++..++.++++.++
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~ 87 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDG 87 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--CC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChhh
Confidence 6899999999999999999999999999999999999999999887 889999999999999999998889999877677
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEe
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF 159 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~ 159 (291)
+.+.++++++||++|+..|.+.+.+.+.+.+.++.|+++|+++++.....|++.++++++++.++.++++|+.+|.++++
T Consensus 88 l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~ 167 (303)
T 3g0o_A 88 VAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYR 167 (303)
T ss_dssp CGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHHHHHEEEEEE
T ss_pred HHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHHHHHCCCEEE
Confidence 88888899999999999999999999988888999999999999999999999899999999999999999999999999
Q ss_pred eCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHH
Q 022834 160 LGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQK 238 (291)
Q Consensus 160 ~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (291)
+++ .|.+.+.|+++|.+...++++++|++.++++.|++++++.+++..+.+.++.++++.+++..++|.++|.+..+.|
T Consensus 168 ~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~k 247 (303)
T 3g0o_A 168 ISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVK 247 (303)
T ss_dssp EESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCchHHHHH
Confidence 998 9999999999999999999999999999999999999999999998888999998889999999999999999999
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhh
Q 022834 239 DMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287 (291)
Q Consensus 239 d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 287 (291)
|++++++.+++.|+++|+++++.++++++.++|+|++||++++++++++
T Consensus 248 D~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 296 (303)
T 3g0o_A 248 DLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296 (303)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC---
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998765
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-48 Score=336.85 Aligned_cols=287 Identities=29% Similarity=0.476 Sum_probs=271.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|+++||+|++|||++++.+.+.+.|+....++.++++++|+||+|||.+..++.++++. ++
T Consensus 32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~-~~ 110 (320)
T 4dll_A 32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ-GV 110 (320)
T ss_dssp SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT-CH
T ss_pred CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch-hH
Confidence 69999999999999999999999999999999999999999999999999999999999999999988999999432 77
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.++++++||++|++.|.+.+.+.+.+.+.++.|+++|+++++..+..|++.++++++++.++.++++|+.+ .+++++
T Consensus 111 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~-~~~~~~ 189 (320)
T 4dll_A 111 AAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF-GRATHV 189 (320)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH-EEEEEE
T ss_pred HhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhc-CCEEEe
Confidence 8888899999999999999999999988888999999999999998899999999999999999999999999 889999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 240 (291)
++.|.+.++|+++|.+...++++++|++.++++.|++++++.++++.+.+.+|.++.+.+++..++|.++|++..+.||+
T Consensus 190 g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~~~~~KDl 269 (320)
T 4dll_A 190 GPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQLKDM 269 (320)
T ss_dssp ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhhc
Q 022834 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR 289 (291)
Q Consensus 241 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~ 289 (291)
+++.+++++.|+++|+++++.++++.+.++|+|++|++++++++++...
T Consensus 270 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~ 318 (320)
T 4dll_A 270 RNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNG 318 (320)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC--
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999987654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-44 Score=305.61 Aligned_cols=267 Identities=27% Similarity=0.385 Sum_probs=249.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|+++||+|++|||++++.+.+.+.|+...++++++++ +|+||+|||++.++++++ +++
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~---~~l 91 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV---GEL 91 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH---HHH
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH---HHH
Confidence 5899999999999999999999999999999999999999999999999999998 999999999988999998 788
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.++++++||++|++.|.+.+++.+.+.+.++.|+++|+++++.....+++.++++++++.+++++++|+.+|.+++++
T Consensus 92 ~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~ 171 (296)
T 3qha_A 92 AGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHA 171 (296)
T ss_dssp HTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHHHEEEEEEE
T ss_pred HHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHHHcCCeEEc
Confidence 88888999999999999999999999988889999999999999999999998999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH------HHHHhhcCCCcccccccccccccCCCCCCccc-
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTL------LDVLDLGGIANPMFKGKGPTMLQSNYAPAFPL- 233 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~- 233 (291)
++.|.+.++|+++|.+.+.++++++|++.++++.|++++++ .+++..+.+.++..+ .+++..+ |.++|..
T Consensus 172 g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~-~~~~f~~~ 248 (296)
T 3qha_A 172 GEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD--NMKDLEP-DNFLYQPF 248 (296)
T ss_dssp ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS--SCSCCCT-TSTTHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh--chhhhhc-CCCCCchh
Confidence 99999999999999999999999999999999999999999 888888777765443 7788877 8899988
Q ss_pred ----ccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCC
Q 022834 234 ----KHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGD 274 (291)
Q Consensus 234 ----~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~ 274 (291)
..+.||++++.+.|++.|+++|+++++.+++..+.+.|+.+
T Consensus 249 ~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~ 293 (296)
T 3qha_A 249 LHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKE 293 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC--
T ss_pred hhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999988743
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-45 Score=313.80 Aligned_cols=283 Identities=19% Similarity=0.295 Sum_probs=254.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|+++||+|++|||++++.+.+.+.|.....++.++++++|+||+|+|++.++++++. .+.+
T Consensus 10 ~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~-~~~l 88 (306)
T 3l6d_A 10 FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG-MPGV 88 (306)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT-STTH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc-ccch
Confidence 589999999999999999999999999999999999999988998889999999999999999999888999983 1155
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.. +.++++||++|++.|...+++.+.+.+.++.|+++|++|++.....+..+++++|+++.+++++++|+.+|.+++++
T Consensus 89 ~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~lg~~~~~~ 167 (306)
T 3l6d_A 89 AR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFL 167 (306)
T ss_dssp HH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHTTCSEEEEC
T ss_pred hh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHHhcCCEEEe
Confidence 44 46899999999999999999999888889999999999988777777778899999999999999999998888999
Q ss_pred --CC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC--CCcccccccccccccCCCCCC-cccc
Q 022834 161 --GE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG--IANPMFKGKGPTMLQSNYAPA-FPLK 234 (291)
Q Consensus 161 --~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~-~~~~ 234 (291)
++ .|.+..+| .+...++++++|++.++++.|++++.+.+++..+. +.+++++.+.+++..++|.++ +++.
T Consensus 168 ~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 243 (306)
T 3l6d_A 168 PWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQARLD 243 (306)
T ss_dssp CHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBHH
T ss_pred cCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCcccHH
Confidence 86 79999999 45567789999999999999999999999999874 578888888899999999885 6889
Q ss_pred cHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhhc
Q 022834 235 HQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR 289 (291)
Q Consensus 235 ~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~ 289 (291)
.+.||++++.+.+++.|+++|+.+++.++++.+.++|+|++||+++++++++...
T Consensus 244 ~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~~~ 298 (306)
T 3l6d_A 244 VHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAREQE 298 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC----
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999999999999999999976643
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=298.92 Aligned_cols=287 Identities=31% Similarity=0.545 Sum_probs=262.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|.++|++|++|||++++.+.+.+.|+....+++++++++|+||+|+|.+.+++.+++..+++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l 85 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 85 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence 68999999999999999999999999999999999999988898888899998999999999999888899988654467
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.++++++|+++|++.+.+.+.+.+.+.+.++.|+++|+++++.....+...++++++++.++.++++|+.+|.+++++
T Consensus 86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~ 165 (299)
T 1vpd_A 86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT 165 (299)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCeEEe
Confidence 77788899999999999988888988888888999999999887777777777888889999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 240 (291)
++.+.+.|.|+++|.+...++.++.|+..++++.|++++++.+++..+...++.+....+.+..+++.+++.++.+.||+
T Consensus 166 ~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~ 245 (299)
T 1vpd_A 166 GDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 245 (299)
T ss_dssp ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCChHHHHHHH
Confidence 88999999999999999999999999999999999999999999988776677666666778888888888888899999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhh
Q 022834 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287 (291)
Q Consensus 241 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 287 (291)
+.+++.++++|+++|++++++++++.+.+.|++++||+++++++++.
T Consensus 246 ~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 292 (299)
T 1vpd_A 246 ANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKL 292 (299)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999764
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=295.70 Aligned_cols=288 Identities=32% Similarity=0.593 Sum_probs=262.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|+....++.++++++|+||+|+|++.+++.+++..+++
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 84 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV 84 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence 68999999999999999999999999999999999999888888888899999999999999999999999998533367
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.++++++|++++++.|...+.+.+.+.+.++.|+++|+.+++.....+...++++++++.++.++++|+.+|.+++++
T Consensus 85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~ 164 (301)
T 3cky_A 85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHV 164 (301)
T ss_dssp HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEEe
Confidence 77788899999999999988888988888888899999998887777778777788889999999999999999998888
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccccc-ccccCCCCCCcccccHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKD 239 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~d 239 (291)
++.+.+.|.|++.|.+...+..++.|++.++++.|++++++.+++..+...++.+....+ .+..+++.+++.++.+.||
T Consensus 165 ~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~kd 244 (301)
T 3cky_A 165 GDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKD 244 (301)
T ss_dssp ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccHHHHHHH
Confidence 889999999999999999999999999999999999999999999987666777766677 7888899999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhh
Q 022834 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 288 (291)
Q Consensus 240 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 288 (291)
++++++.++++|+++|++++++++++++.+.|+++.||+++++++++..
T Consensus 245 ~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 293 (301)
T 3cky_A 245 LGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMT 293 (301)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999997653
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-42 Score=293.98 Aligned_cols=288 Identities=28% Similarity=0.486 Sum_probs=260.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|.+.||+|++|+ ++++.+.+.+.|+....++.++++++|+||+|+|++.+++.+++..+++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 82 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC 82 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence 799999999999999999999999999999 9999999988888888899998999999999999998899999432377
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.++++++|++++++.|...+.+.+.+.+.++.|++.|+.+++.....+.+.++++++++.++.+.++|+.+|.+++++
T Consensus 83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~ 162 (295)
T 1yb4_A 83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLV 162 (295)
T ss_dssp TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEEe
Confidence 77788899999999999988888988888778889999998887777778877788889999999999999999998999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 240 (291)
++.+.+.|.|++.|.+...+..++.|+..++++.|++++++.+++..+...++.+....+.+..+++.+++++..+.||+
T Consensus 163 ~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~kd~ 242 (295)
T 1yb4_A 163 GGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDL 242 (295)
T ss_dssp ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCchHHHHHHH
Confidence 88999999999999999999999999999999999999999999988766666666555677778899999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhhc
Q 022834 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR 289 (291)
Q Consensus 241 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~ 289 (291)
+++++.+++.|+++|++++++++++++.+.|+|++||+++++++++...
T Consensus 243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~ 291 (295)
T 1yb4_A 243 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALELMAN 291 (295)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHHHHT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999976543
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=291.33 Aligned_cols=288 Identities=27% Similarity=0.476 Sum_probs=254.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|.++|++|++|||++++.+.+.+.|+....++.++++++|+||+|+|++.+++.++...+.+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~ 80 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI 80 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence 89999999999999999999999999999999999999988898888899998899999999999999999998433335
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.++++++|+++++..+...+.+.+.+.+.+..|++.|+.+++.....+...++.+++++..+.++++|+.+|.+++++
T Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~ 160 (296)
T 2gf2_A 81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYC 160 (296)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTTTEEEEEEE
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHHHcCCeEEe
Confidence 55677899999988889988888877777778889999999888777778888888899999999999999999998888
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccc--c-----ccccCCCCCCccc
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKG--P-----TMLQSNYAPAFPL 233 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~--~-----~~~~~~~~~~~~~ 233 (291)
+..+.+.+.|+++|.+...++.++.|++.++++.|++++++.+++..+.+.++++.... + .+..+++.+++..
T Consensus 161 ~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~ 240 (296)
T 2gf2_A 161 GAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT 240 (296)
T ss_dssp ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCch
Confidence 88899999999999988999999999999999999999999999987665655544322 1 2345678888988
Q ss_pred ccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhh
Q 022834 234 KHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 288 (291)
Q Consensus 234 ~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 288 (291)
+.+.||++++++.++++|+++|++++++++++.+.++|++++||+++++++++.+
T Consensus 241 ~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 295 (296)
T 2gf2_A 241 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE 295 (296)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcc
Confidence 8899999999999999999999999999999999999999999999999997653
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=293.11 Aligned_cols=285 Identities=50% Similarity=0.841 Sum_probs=258.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|++.|++|++|||++++.+.+.+.|.....++.++++++|+||+|+|.+.+++++++...++
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~ 110 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV 110 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence 68999999999999999999999999999999999999988888888889898899999999998788999998533234
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.+.++++|+++|+..+...+.+.+.+...+..|+++|+++++.....+...++++++++.++.++++|+.+|.+++++
T Consensus 111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~ 190 (316)
T 2uyy_A 111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 190 (316)
T ss_dssp GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEEC
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHHHhcCCEEEe
Confidence 56777899999999999988888988887778889999999988888888877788889999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 240 (291)
++.+.+.|.|++.|.+.+....++.|++.++++.|++++++.+++..+...++.+....+.+..++++++++++.+.||+
T Consensus 191 ~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~ 270 (316)
T 2uyy_A 191 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDL 270 (316)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcHHHHHHHH
Confidence 88999999999999999999999999999999999999999999998877777776666677778888999999899999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHH
Q 022834 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285 (291)
Q Consensus 241 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 285 (291)
+++++.+++.|+++|+++++++++.++.+.|+|++||++++++++
T Consensus 271 ~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~~ 315 (316)
T 2uyy_A 271 RLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYI 315 (316)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGTC
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 999999999999999999999999999999999999999988653
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=289.58 Aligned_cols=282 Identities=24% Similarity=0.378 Sum_probs=254.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|.+ |++|++|||++++.+.+.+.|+...+ +.++++++|+||+|+|.+.+++.++ +++
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~---~~l 76 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA---EAL 76 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH---HHH
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH---HHH
Confidence 689999999999999999999 99999999999999888877777666 7777889999999999887888888 677
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.++++++|+++|+..+...+.+.+.+.+.+..|+++|+.+++.....|...++++++++.++.++++| .+|.+++++
T Consensus 77 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~g~~~~~~ 155 (289)
T 2cvz_A 77 YPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHV 155 (289)
T ss_dssp TTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEEEE
T ss_pred HhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hhcCCeEEc
Confidence 7778889999999999999888898888877888998898888877777887778888999999999999 999988888
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccccc-ccccCCCCCCcccccHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKD 239 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~d 239 (291)
++.+.+.|.|++.|.+...+..++.|+..++++.|++++++.+++..+...+++++...+ .+..++++++++++.+.||
T Consensus 156 ~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~~~~~~kd 235 (289)
T 2cvz_A 156 GPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKD 235 (289)
T ss_dssp ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHHHHhccchhhcCCCCCCcChHHHHHH
Confidence 889999999999999999999999999999999999999999999887666677766666 6888888899999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhh
Q 022834 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 288 (291)
Q Consensus 240 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 288 (291)
++.+++.++++|+++|++++++++++++.+.|++++||+++++.+++..
T Consensus 236 ~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~~~ 284 (289)
T 2cvz_A 236 LGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWG 284 (289)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999997653
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=291.22 Aligned_cols=275 Identities=19% Similarity=0.285 Sum_probs=236.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEcCCc-------chhHHHHHCCCcccC-CHHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTL-------SKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~-------~~~~~l~~~g~~~~~-~~~~~~~~~dvvii~vp~~~~~~ 71 (291)
|||+|||+|.||..++..|+++| |+|++|||++ +..+.+.+.|+ .. ++.++++++|+||+|||.+...+
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~~ 102 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATKA 102 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHHH
T ss_pred CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHHH
Confidence 68999999999999999999999 9999999997 45566666777 56 78888999999999998765544
Q ss_pred HHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHH
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALN 151 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~ 151 (291)
.+ +++.+.++++++||++|++.|.+.+++.+.+.+.++.|+++|++|+ .....++++++++|+.+ +.++++|+
T Consensus 103 -~~---~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~-~~a~~g~l~i~vgg~~~--~~~~~ll~ 175 (317)
T 4ezb_A 103 -VA---ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMAR-VPPYAEKVPILVAGRRA--VEVAERLN 175 (317)
T ss_dssp -HH---HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSC-STTTGGGSEEEEESTTH--HHHHHHHH
T ss_pred -HH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCC-chhhcCCEEEEEeCChH--HHHHHHHH
Confidence 45 5777888899999999999999999999999888999999999995 45667788889999777 89999999
Q ss_pred HhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCcccccccccccccCCCCC
Q 022834 152 VIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAP 229 (291)
Q Consensus 152 ~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~ 229 (291)
.+|.+++++++ .|.+.++|+++|.+....+++++|++.++++.|++++ +++.+..+. ..++ ..+.+++..++|.+
T Consensus 176 ~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~-~~~~l~~~~~~~~~--~~~~~~~~~~~~~~ 252 (317)
T 4ezb_A 176 ALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTER-ILDSVQETFPGLDW--RDVADYYLSRTFEH 252 (317)
T ss_dssp TTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCH--HHHHHHHHHHHHHH
T ss_pred HhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcCccccH--HHhhhhhhcCCCCC
Confidence 99999999998 9999999999999999999999999999999999996 555555443 2322 44566777888877
Q ss_pred CcccccHHHHHHHHHHHHhhcCCCchHHHHHHHH----HHHHHHCCCC-CCcHHHHHHHHHhhhcC
Q 022834 230 AFPLKHQQKDMRLALALGDENAVSMPIAAAANEA----FKKARSLGLG-DNDFSAVFEVVKDLKRS 290 (291)
Q Consensus 230 ~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~----~~~~~~~g~~-~~d~~~~~~~~~~~~~~ 290 (291)
+|. +.||++++.+++++.|+++|+++++.++ ++.+.+.|++ +.||+++++.++...++
T Consensus 253 g~~---~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 315 (317)
T 4ezb_A 253 GAR---RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARRLAR 315 (317)
T ss_dssp HHH---HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHHHHHHHC--
T ss_pred Ccc---hHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhhccc
Confidence 765 5999999999999999999999999999 7777788987 99999999999876543
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-40 Score=281.96 Aligned_cols=262 Identities=20% Similarity=0.273 Sum_probs=232.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCC--cchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT--LSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|||+|||+|.||..++..|+++|| +|++|||+ +++.+.+.+.|+....++.++++++|+||+|||.+... +++
T Consensus 25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~-~~~--- 100 (312)
T 3qsg_A 25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAAL-EVA--- 100 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHH-HHH---
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHH-HHH---
Confidence 689999999999999999999999 99999997 57888888889999999999999999999999876544 466
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--CCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhcc
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK 155 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~ 155 (291)
+++.+.++++++|||+|+..|.+.+.+.+.+.+. +..|+++|++++.. ...++++++++|+++ +.++++|+.+|.
T Consensus 101 ~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~-~~~g~l~i~vgg~~~--~~~~~ll~~~g~ 177 (312)
T 3qsg_A 101 QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVK-PHGHRVPLVVDGDGA--RRFQAAFTLYGC 177 (312)
T ss_dssp HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCST-TTGGGSEEEEESTTH--HHHHHHHHTTTC
T ss_pred HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCch-hhcCCEEEEecCChH--HHHHHHHHHhCC
Confidence 6788888899999999999999999999988888 89999999999654 447788889999877 899999999999
Q ss_pred ceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccc
Q 022834 156 KAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLK 234 (291)
Q Consensus 156 ~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 234 (291)
+++++++ +|.+.++|+++|.+....+++++|++.++++.|+++ ++++.+..+. .++.++.+.+++..++|.+++++
T Consensus 178 ~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~-~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~- 254 (312)
T 3qsg_A 178 RIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLAD-RVLASLDASF-PEHHLRDLALYLVERNLEHADRR- 254 (312)
T ss_dssp EEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHS-GGGTHHHHHHHHHHHHHHHHHHH-
T ss_pred CeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHhcC-CchhHHHhhhHhhcCCCCcccch-
Confidence 9999998 899999999999999999999999999999999999 5778887665 35556667778888888888764
Q ss_pred cHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCC
Q 022834 235 HQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGD 274 (291)
Q Consensus 235 ~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~ 274 (291)
.||++++.+++++.|+++|+++++.++++++.+.|+++
T Consensus 255 --~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~ 292 (312)
T 3qsg_A 255 --AHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAAL 292 (312)
T ss_dssp --HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCcc
Confidence 79999999999999999999999999999998865443
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=268.06 Aligned_cols=275 Identities=19% Similarity=0.304 Sum_probs=234.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhC---CEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKC---TITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~---dvvii~vp~~~~~~~v~~~~ 77 (291)
|||+|||+|.||..++..|+++||+|++|||++++++.+.+.|+..+.+++++++++ |+||+|||.+ ++++++
T Consensus 23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl--- 98 (358)
T 4e21_A 23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML--- 98 (358)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH---
T ss_pred CEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH---
Confidence 699999999999999999999999999999999999999999999999999999999 9999999887 899999
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhc---
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIG--- 154 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g--- 154 (291)
+++.+.++++++|||+|++.|.+.+++.+.+.++++.|+++|++|++..+..|. .++++|+++.++.++++|+.++
T Consensus 99 ~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~-~im~GG~~~a~~~~~~ll~~lg~~~ 177 (358)
T 4e21_A 99 QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAPGI 177 (358)
T ss_dssp HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC-EEEEESCHHHHHHTHHHHHHHSCCG
T ss_pred HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC-eeeecCCHHHHHHHHHHHHHhcccc
Confidence 788888989999999999999999999999989999999999999999999998 7899999999999999999999
Q ss_pred -----------------cceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------------
Q 022834 155 -----------------KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS----------------------- 194 (291)
Q Consensus 155 -----------------~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~----------------------- 194 (291)
..++++++.|.+..+|+++|.+....+.+++|++.++++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~ 257 (358)
T 4e21_A 178 GAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYR 257 (358)
T ss_dssp GGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCC
T ss_pred ccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcc
Confidence 5788999999999999999999999999999999999998
Q ss_pred -CCCHHHHHHHHhhcC-CCcccccccccccccCCCCCCcccccHHHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 195 -GLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAFPLKHQQKD---MRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 195 -g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
|++.+++.++++.+. ..|++++...+.+. .++... .+....+| .++++..|.+.|+|+|++.+ +++.+..+
T Consensus 258 ~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~-~~p~~~-~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~--al~~~~~s 333 (358)
T 4e21_A 258 YDLDLADITEVWRRGSVISSWLLDLSATALL-DSPDLQ-EFQGRVSDSGEGRWTVAAAIDEGVPAHVLSS--ALYERFSS 333 (358)
T ss_dssp CCCCHHHHHHHHTTTSTTCBHHHHHHHHHHH-HCTTCT-TC--CCCCCSHHHHHHHHHHHHTCCCHHHHH--HHHHHHHH
T ss_pred cCCCHHHHHHHHhCccHHHHHHHHHHHHHHh-hCCChH-HHHHHHHhcCcHHHHHHHHHHcCCChHHHHH--HHHHHHHH
Confidence 899999999999876 68888876543322 222110 11112222 37799999999999999986 35555555
Q ss_pred CCCCCCcHH-HHHHHHHh
Q 022834 270 LGLGDNDFS-AVFEVVKD 286 (291)
Q Consensus 270 ~g~~~~d~~-~~~~~~~~ 286 (291)
+ +..++. .+++.+++
T Consensus 334 ~--~~~~~~~~l~~a~r~ 349 (358)
T 4e21_A 334 R--GEDDFANRLLSAMRY 349 (358)
T ss_dssp T--TTTHHHHHHHHHHC-
T ss_pred C--CCcccHHHHHHHHHH
Confidence 3 455554 47777654
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=271.58 Aligned_cols=262 Identities=20% Similarity=0.276 Sum_probs=225.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC---C--cccCCHHHHHh---hCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---A--TVGGSPAEVIK---KCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g---~--~~~~~~~~~~~---~~dvvii~vp~~~~~~~ 72 (291)
|||+|||+|.||..|+.+|+++||+|++|||++++++.+.+.+ . ..+.+++++++ ++|+||+|||.+..+++
T Consensus 5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~ 84 (484)
T 4gwg_A 5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDD 84 (484)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHHH
T ss_pred CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHHH
Confidence 6899999999999999999999999999999999999988763 2 33678999887 49999999998888999
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNV 152 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~ 152 (291)
++ +++.+.++++++|||+|++.|.+..++.+.+.+.|+.|+++|++|++..+..|+ .++++|+++.++.++++|+.
T Consensus 85 vl---~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-~im~GG~~ea~~~v~pll~~ 160 (484)
T 4gwg_A 85 FI---EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-SLMPGGNKEAWPHIKTIFQG 160 (484)
T ss_dssp HH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHHH
T ss_pred HH---HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC-eeecCCCHHHHHHHHHHHHH
Confidence 99 788899999999999999999998899888888899999999999999998898 78899999999999999999
Q ss_pred hccce-------EeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---hhcCCCcccccccccc
Q 022834 153 IGKKA-------FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVL---DLGGIANPMFKGKGPT 221 (291)
Q Consensus 153 ~g~~~-------~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~-~g~~~~~~~~~~---~~~~~~s~~~~~~~~~ 221 (291)
++.++ +++|+.|.+..+|+++|.+...++++++|++.++++ .|++++++.+++ +.+...|++++.+.+.
T Consensus 161 ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~~~~ 240 (484)
T 4gwg_A 161 IAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANI 240 (484)
T ss_dssp HSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred hcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHHHHHHH
Confidence 99877 788899999999999999999999999999999999 999999998886 5677888999888887
Q ss_pred cccCCCCCCcccccHH-----HHH-HHHHHHHhhcCCCchH-HHHHHHHHHH
Q 022834 222 MLQSNYAPAFPLKHQQ-----KDM-RLALALGDENAVSMPI-AAAANEAFKK 266 (291)
Q Consensus 222 ~~~~~~~~~~~~~~~~-----~d~-~~~~~~a~~~g~~~p~-~~~~~~~~~~ 266 (291)
+..+|+.+++.++... |.. .+..+.|.+.|+|+|+ .+++.+.+..
T Consensus 241 l~~~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S 292 (484)
T 4gwg_A 241 LKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLS 292 (484)
T ss_dssp HHCBCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HhcCCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHh
Confidence 7777766434343322 222 4567788899999995 4455544433
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=269.39 Aligned_cols=256 Identities=20% Similarity=0.271 Sum_probs=229.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----CCCcccCCHHHHHhh---CCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----HGATVGGSPAEVIKK---CTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----~g~~~~~~~~~~~~~---~dvvii~vp~~~~~~~ 72 (291)
.+|+|||+|.||.+|+.+|+++||+|++|||++++++.+.+ .|+..+.++++++++ +|+||+|||.+..+++
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~ 90 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDA 90 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHH
T ss_pred CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHH
Confidence 37999999999999999999999999999999999999987 577788899998877 9999999988788999
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNV 152 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~ 152 (291)
++ +++.+.++++++||++|++.+...+++.+.+.+.++.|+++|+++++..+..|. .++++++++.++.++++|+.
T Consensus 91 vl---~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~-~im~gg~~e~~~~v~~ll~~ 166 (497)
T 2p4q_A 91 LI---NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNIFQS 166 (497)
T ss_dssp HH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHHH
T ss_pred HH---HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC-eEEecCCHHHHHHHHHHHHH
Confidence 99 788888988999999999999988888888888889999999999999888888 67888999999999999999
Q ss_pred hccc------eEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCccccccccccc
Q 022834 153 IGKK------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPTM 222 (291)
Q Consensus 153 ~g~~------~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~ 222 (291)
+|.+ +.++++.|.+.++|+++|.+...++.+++|++.++++ .|++++++.+++. .+...|++++.+.+.+
T Consensus 167 ~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~l 246 (497)
T 2p4q_A 167 ISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDIL 246 (497)
T ss_dssp HSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHHH
T ss_pred hcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHHH
Confidence 9987 7788889999999999999999999999999999999 5999999999885 5667778888777777
Q ss_pred ccCCCCCCcccccHH-----HHHH-HHHHHHhhcCCCchHHHHH
Q 022834 223 LQSNYAPAFPLKHQQ-----KDMR-LALALGDENAVSMPIAAAA 260 (291)
Q Consensus 223 ~~~~~~~~~~~~~~~-----~d~~-~~~~~a~~~g~~~p~~~~~ 260 (291)
..+++.+++.++.+. ||++ ...+.+++.|+++|++...
T Consensus 247 ~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~a 290 (497)
T 2p4q_A 247 KFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEA 290 (497)
T ss_dssp TCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred hcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHH
Confidence 888886557777666 7766 6889999999999998884
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-35 Score=263.41 Aligned_cols=256 Identities=18% Similarity=0.284 Sum_probs=224.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC----CCcccCCHHHHHhh---CCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAEVIKK---CTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g~~~~~~~~~~~~~---~dvvii~vp~~~~~~~v 73 (291)
|+|+|||+|.||.+|+.+|+++||+|++|||++++++.+.+. |+..+.++++++++ +|+||+|||.+..++++
T Consensus 16 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~v 95 (480)
T 2zyd_A 16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAA 95 (480)
T ss_dssp BSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHHH
T ss_pred CeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHHH
Confidence 589999999999999999999999999999999999988865 78888899998877 99999999887789999
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHh
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVI 153 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~ 153 (291)
+ +++.+.++++++||+++++.+...+++.+.+.+.++.|+++|+++++..+..|. .++++++++.++.++++|+.+
T Consensus 96 l---~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~~ 171 (480)
T 2zyd_A 96 I---DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTKI 171 (480)
T ss_dssp H---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEESCHHHHHHHHHHHHHH
T ss_pred H---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC-eEEecCCHHHHHHHHHHHHHH
Confidence 9 788888888999999999999888888888888889999999999998888888 688899999999999999999
Q ss_pred ccc-------eEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCccccccccccc
Q 022834 154 GKK-------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPTM 222 (291)
Q Consensus 154 g~~-------~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~ 222 (291)
|.+ +.++++.|.+.++|+++|.+...++.+++|++.++++ .|++++++.+++. .+...+++++...+.+
T Consensus 172 g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l 251 (480)
T 2zyd_A 172 AAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIF 251 (480)
T ss_dssp SCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHHHH
T ss_pred hccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 987 6888889999999999999999999999999999999 6999999998884 4656777777666666
Q ss_pred ccCCCCCCcccccHH-----HHH-HHHHHHHhhcCCCchHHHHH
Q 022834 223 LQSNYAPAFPLKHQQ-----KDM-RLALALGDENAVSMPIAAAA 260 (291)
Q Consensus 223 ~~~~~~~~~~~~~~~-----~d~-~~~~~~a~~~g~~~p~~~~~ 260 (291)
..+++.+++.++.+. |+. ..+.+.+++.|+++|+++.+
T Consensus 252 ~~~d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~a 295 (480)
T 2zyd_A 252 TKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITES 295 (480)
T ss_dssp HCBCTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHH
T ss_pred hcCCCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHH
Confidence 667775556665444 333 37889999999999999884
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=242.34 Aligned_cols=255 Identities=20% Similarity=0.284 Sum_probs=209.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcC--CcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR--TLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r--~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+|||+|.||..++..|+++||+|++|+| ++++.+.+.+.|+. .++.++++++|+||+|||.+...+.+ .
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~----~ 74 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA----R 74 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH----H
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH----H
Confidence 8999999999999999999999999999998 77778888777876 67788888999999999876555554 3
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceE
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF 158 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~ 158 (291)
++.+.+++ ++++++++.+.+.+.+.+.+.+.+ |+++|+.+++.....|.. ++++++.+ +.+++ |+.+|.+++
T Consensus 75 ~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~-~~~~g~~~--~~~~~-l~~~g~~~~ 146 (264)
T 1i36_A 75 RAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIR-IIASGRDA--EEFMK-LNRYGLNIE 146 (264)
T ss_dssp HHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCE-EEEESTTH--HHHHG-GGGGTCEEE
T ss_pred HHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCe-EEecCCcH--HHhhh-HHHcCCeeE
Confidence 55566644 999999999988888888777666 889999999888778877 77777665 78888 999999888
Q ss_pred eeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHH
Q 022834 159 FLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ 237 (291)
Q Consensus 159 ~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (291)
++++ ++.+.|+|+++|.+.+.++.++.|++.++++.|++++ .++.+..+.+.++. ...+.+..+++.++++ +.
T Consensus 147 ~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~---~~ 220 (264)
T 1i36_A 147 VRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFR--ESAISRLKSSCIHARR---RY 220 (264)
T ss_dssp ECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTH--HHHHHHHHHHHHTHHH---HH
T ss_pred ECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCccHH--HHHHHHhcCCCCcchh---hH
Confidence 8887 8999999999999999999999999999999999987 77888765433332 1344566677777765 68
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCc
Q 022834 238 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDND 276 (291)
Q Consensus 238 ~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d 276 (291)
+|++.+.+.+++. +++|++++++++++++.+.|.+..|
T Consensus 221 ~~~~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~~~~~~~ 258 (264)
T 1i36_A 221 EEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSADA 258 (264)
T ss_dssp HHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC------G
T ss_pred HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcCCChhh
Confidence 9999999999999 9999999999999999887765554
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=256.82 Aligned_cols=262 Identities=20% Similarity=0.267 Sum_probs=225.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----CCCcccCCHHHHHh---hCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----HGATVGGSPAEVIK---KCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----~g~~~~~~~~~~~~---~~dvvii~vp~~~~~~~ 72 (291)
|||+|||+|.||..++..|+++||+|++|||++++++.+.+ .|+..+.+++++++ ++|+||+|||.+.++++
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~ 82 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence 79999999999999999999999999999999999999987 67777889998875 89999999988778999
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNV 152 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~ 152 (291)
++ +++.+.++++++||+++++.+....++.+.+.+.++.|+++|+++++..+..|. .++++++++..+.++++|+.
T Consensus 83 vl---~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~-~i~~gg~~e~~~~v~~ll~~ 158 (482)
T 2pgd_A 83 FI---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQG 158 (482)
T ss_dssp HH---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHH
T ss_pred HH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC-eEEeCCCHHHHHHHHHHHHH
Confidence 99 778888888999999999999888888888877788999999999988888888 56888889999999999999
Q ss_pred hccce-------EeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHh---hcCCCcccccccccc
Q 022834 153 IGKKA-------FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS-GLDPRTLLDVLD---LGGIANPMFKGKGPT 221 (291)
Q Consensus 153 ~g~~~-------~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~-g~~~~~~~~~~~---~~~~~s~~~~~~~~~ 221 (291)
+|.++ .++++.|.+.++|+++|.+...++.+++|++.++++. |++++++.+++. .+...|++.+...+.
T Consensus 159 ~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~~~~ 238 (482)
T 2pgd_A 159 IAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASI 238 (482)
T ss_dssp HSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred hhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHHhHH
Confidence 99876 6677789999999999999999999999999999999 999999999986 444556666655555
Q ss_pred cccCCCCCCcccccH------HHHHHHHHHHHhhcCCCchHHH-HHHHHHHH
Q 022834 222 MLQSNYAPAFPLKHQ------QKDMRLALALGDENAVSMPIAA-AANEAFKK 266 (291)
Q Consensus 222 ~~~~~~~~~~~~~~~------~~d~~~~~~~a~~~g~~~p~~~-~~~~~~~~ 266 (291)
+..+++.+++.++.+ .++...+.+.|+++|+++|++. ++++.+..
T Consensus 239 l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s 290 (482)
T 2pgd_A 239 LKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLS 290 (482)
T ss_dssp HHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hhccCCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhh
Confidence 666777666655543 4667789999999999999995 56666643
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=251.96 Aligned_cols=254 Identities=14% Similarity=0.141 Sum_probs=207.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--------------------CCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~~dvvi 61 (291)
+|+|||+|.||..+|..|+++||+|++||+++++++.+++. ++..++++.+++++||+||
T Consensus 10 ~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvvi 89 (446)
T 4a7p_A 10 RIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAVF 89 (446)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEEE
Confidence 79999999999999999999999999999999999988752 2456778889999999999
Q ss_pred EecCCHH----------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC----CcEEEcccCCChHhh
Q 022834 62 GMLADPA----------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG----GHFLEAPVSGSKQPA 127 (291)
Q Consensus 62 i~vp~~~----------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 127 (291)
+|||++. .+++++ +++.+.++++++||+.||..|.+.+++.+.+.+.+ +.++..|.+..+-..
T Consensus 90 i~Vptp~~~~~~~~Dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~a~eG~a 166 (446)
T 4a7p_A 90 IAVGTPSRRGDGHADLSYVFAAA---REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREGAA 166 (446)
T ss_dssp ECCCCCBCTTTCCBCTHHHHHHH---HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTTSCCEEEECCCCCCTTSH
T ss_pred EEcCCCCccccCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCCCCceEEeCcccccccch
Confidence 9998874 588888 78888899999999999999999999998887653 445566644333221
Q ss_pred c---ccceEEEecCC-HHHHHHHHHHHHHhccc---eEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022834 128 E---TGQLVILSAGE-KALYDEAISALNVIGKK---AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRT 200 (291)
Q Consensus 128 ~---~g~~~~~~~g~-~~~~~~~~~ll~~~g~~---~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~ 200 (291)
. .....+++|++ ++..+.++++++.++.. +++.++++.++..|++.|.+.+..+++++|+..+|++.|+|+++
T Consensus 167 ~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~GiD~~~ 246 (446)
T 4a7p_A 167 IEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCEQVGADVQE 246 (446)
T ss_dssp HHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred hhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 0 01114666764 78889999999998864 57788899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 201 LLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 201 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
+.++++.....++. .. .+.+|+...++.||+.++.+.|++.|+++|+++++.+..+..
T Consensus 247 v~~~~~~~~rig~~-------~l--~pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~~~~~~iN~~~ 304 (446)
T 4a7p_A 247 VSRGIGMDNRIGGK-------FL--HAGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQVNDAR 304 (446)
T ss_dssp HHHHHHTSTTC----------CC--CCCSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCc-------cC--CCCCCcchhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999876422111 11 234577888999999999999999999999999988877654
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=253.39 Aligned_cols=256 Identities=20% Similarity=0.317 Sum_probs=221.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC----CCcccCCHHHHHhh---CCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAEVIKK---CTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g~~~~~~~~~~~~~---~dvvii~vp~~~~~~~v 73 (291)
|||+|||+|.||..++..|+++||+|++|||++++++.+.+. |+..+.++++++++ +|+||+|||.+.+++++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v 85 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT 85 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence 489999999999999999999999999999999999988765 67778899998876 99999999887789999
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHh
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVI 153 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~ 153 (291)
+ +++.+.++++++||+++++.+...+++.+.+.+.++.|+++|+++++..+..|. .++++++++.++.++++|+.+
T Consensus 86 l---~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~~ 161 (474)
T 2iz1_A 86 I---KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQI 161 (474)
T ss_dssp H---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC-CEEEEECHHHHHHHHHHHHHH
T ss_pred H---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC-eEEecCCHHHHHHHHHHHHHH
Confidence 9 788888888999999999998888888887777788999999999988888888 567888999999999999999
Q ss_pred ccc--------eEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCcccccccccc
Q 022834 154 GKK--------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPT 221 (291)
Q Consensus 154 g~~--------~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~ 221 (291)
|.+ +.++++.|.+.++|+++|.+...++.+++|++.++++ .|++++++.+++. .+...|++.+...+.
T Consensus 162 g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~~ 241 (474)
T 2iz1_A 162 AAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEV 241 (474)
T ss_dssp SCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred hcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhhH
Confidence 987 5778889999999999999999999999999999999 7999999998885 344566666666555
Q ss_pred cccCCCCCC-cccccHH-----HHHH-HHHHHHhhcCCCchHHHHH
Q 022834 222 MLQSNYAPA-FPLKHQQ-----KDMR-LALALGDENAVSMPIAAAA 260 (291)
Q Consensus 222 ~~~~~~~~~-~~~~~~~-----~d~~-~~~~~a~~~g~~~p~~~~~ 260 (291)
+..+|+.+| +.++.+. |+.+ .+.+.+++.|+++|+++.+
T Consensus 242 l~~~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~a 287 (474)
T 2iz1_A 242 LKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES 287 (474)
T ss_dssp TTCBCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred hhcCCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHH
Confidence 666788766 5555443 5555 6889999999999999884
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=252.53 Aligned_cols=254 Identities=20% Similarity=0.279 Sum_probs=217.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-C-------CcccCCHHHHHhh---CCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-G-------ATVGGSPAEVIKK---CTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g-------~~~~~~~~~~~~~---~dvvii~vp~~~~ 69 (291)
|||+|||+|.||..++..|+++||+|++|||++++.+.+.+. | +..+.++++++++ +|+||+|||.+.+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 899999999999999999999999999999999999988764 5 5667788888875 9999999988778
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHH
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISA 149 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~l 149 (291)
+++++ +++.+.++++++||+++++.+...+++.+.+.+.++.|+++|+.+++.....|. .++++++++..+.++++
T Consensus 82 v~~vl---~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l 157 (478)
T 1pgj_A 82 TDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPI 157 (478)
T ss_dssp HHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHH
T ss_pred HHHHH---HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC-eEeccCCHHHHHHHHHH
Confidence 99998 788888888999999999999888888888877788999999999988888887 57788899999999999
Q ss_pred HHHhccc-------eEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh----hcCCCccccccc
Q 022834 150 LNVIGKK-------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD----LGGIANPMFKGK 218 (291)
Q Consensus 150 l~~~g~~-------~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~----~~~~~s~~~~~~ 218 (291)
|+.+|.+ +.++++.|.+.+.|+++|.+...++.+++|++.++++.|++++++.+++. .+...++..+..
T Consensus 158 l~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~ 237 (478)
T 1pgj_A 158 VEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDIS 237 (478)
T ss_dssp HHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHH
T ss_pred HHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHhh
Confidence 9999987 67888899999999999999999999999999999999999999999886 455556666555
Q ss_pred ccccccCCCCCC-cccccHH-----HHH-HHHHHHHhhcCCCchHHHH
Q 022834 219 GPTMLQSNYAPA-FPLKHQQ-----KDM-RLALALGDENAVSMPIAAA 259 (291)
Q Consensus 219 ~~~~~~~~~~~~-~~~~~~~-----~d~-~~~~~~a~~~g~~~p~~~~ 259 (291)
.+.+..+++ +| +.++.+. |++ +.+.+.|+++|+++|++++
T Consensus 238 ~~~l~~~d~-~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~ 284 (478)
T 1pgj_A 238 IAAARAKDK-DGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNM 284 (478)
T ss_dssp HHHHHCBCT-TSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHH
T ss_pred chhhhcCCC-CChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHH
Confidence 554555566 33 4444443 444 6899999999999999998
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=250.42 Aligned_cols=253 Identities=13% Similarity=0.105 Sum_probs=206.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--------------------CCcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+|.||..+|..|+++||+|++||+++++++.+.+. ++..++++.++++++|+|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV 82 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII 82 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence 799999999999999999999999999999999998888762 234567888889999999
Q ss_pred EEecCCHH---------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC--------CcEEEcccCCC
Q 022834 61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG--------GHFLEAPVSGS 123 (291)
Q Consensus 61 ii~vp~~~---------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 123 (291)
|+|||++. .+++++ +++.+.++++++||+.|+..|.+.+++.+.+.+.+ +.+...|.+..
T Consensus 83 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~ 159 (450)
T 3gg2_A 83 FIAVGTPAGEDGSADMSYVLDAA---RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLK 159 (450)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCC
T ss_pred EEEcCCCcccCCCcChHHHHHHH---HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhhhc
Confidence 99998874 788888 78888898999999999999999998887776531 23345554333
Q ss_pred hHhhc---ccceEEEecC-CHHHHHHHHHHHHHhcc--ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 022834 124 KQPAE---TGQLVILSAG-EKALYDEAISALNVIGK--KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLD 197 (291)
Q Consensus 124 ~~~~~---~g~~~~~~~g-~~~~~~~~~~ll~~~g~--~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~ 197 (291)
+-... .....+++|+ +++..+.++++++.++. .+++.++++.+++.|++.|.+.+..+++++|+..+|++.|+|
T Consensus 160 eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid 239 (450)
T 3gg2_A 160 EGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCERVGAD 239 (450)
T ss_dssp TTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 22110 1111356665 68899999999999886 356778889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcccccccccccccCCCC--CCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 198 PRTLLDVLDLGGIANPMFKGKGPTMLQSNYA--PAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 198 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
++++.++++.... +....+. +|+...++.||+.++.+.|++.|+++|+++++.++.+..
T Consensus 240 ~~~v~~~~~~~~r-----------ig~~~~~pg~G~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~iN~~~ 300 (450)
T 3gg2_A 240 VSMVRLGIGSDSR-----------IGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNEKQ 300 (450)
T ss_dssp HHHHHHHHHTSTT-----------TCSSSCCCSSCCCSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCC-----------CCcccCCCCCCCCcccHHhhHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 9999999987631 1112233 457788899999999999999999999999988877654
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=242.86 Aligned_cols=254 Identities=15% Similarity=0.059 Sum_probs=206.4
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CC-cEEEEcCCcc----hhHHHHHC---------------------C-CcccCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GF-KVTVWNRTLS----KCDELVAH---------------------G-ATVGGSPAE 52 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~-~V~~~~r~~~----~~~~l~~~---------------------g-~~~~~~~~~ 52 (291)
|||+|||+|.||..+|..|+++ || +|++||++++ +++.+.+. | +..+++ .+
T Consensus 19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~e 97 (478)
T 3g79_A 19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-FS 97 (478)
T ss_dssp CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-GG
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-HH
Confidence 7999999999999999999999 99 9999999999 88777642 1 233445 67
Q ss_pred HHhhCCEEEEecCCHH-----------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHH-h-cC------C
Q 022834 53 VIKKCTITIGMLADPA-----------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAIT-S-KG------G 113 (291)
Q Consensus 53 ~~~~~dvvii~vp~~~-----------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~-~-~~------~ 113 (291)
++++||+||+|||++. .+..+. +++.+.++++++||+.||..|.+.+++.+.+. + .| +
T Consensus 98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~d~ 174 (478)
T 3g79_A 98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGI---RNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDF 174 (478)
T ss_dssp GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHH---HHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTTTB
T ss_pred HHhcCCEEEEecCCchhccCCccccHHHHHHHH---HHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCCce
Confidence 7889999999998873 245555 67888888999999999999999988886443 2 34 3
Q ss_pred cEEEcccCCChHhhcccc---eEEEecCCHHHHHHHHHHHHHh-ccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 022834 114 HFLEAPVSGSKQPAETGQ---LVILSAGEKALYDEAISALNVI-GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLV 189 (291)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~---~~~~~~g~~~~~~~~~~ll~~~-g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~ 189 (291)
.++++|.+..+-.+..+. ..++.|++++..+.++++++.+ +..++++++++.++..|++.|.+.++.+++++|+..
T Consensus 175 ~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~Ia~~nE~~~ 254 (478)
T 3g79_A 175 ALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAINQLAL 254 (478)
T ss_dssp EEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999876654433222 2467788999999999999999 788888989999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCc--ccccHHHHHHHHHHHHhhcCCC-------chHHHHH
Q 022834 190 LAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAF--PLKHQQKDMRLALALGDENAVS-------MPIAAAA 260 (291)
Q Consensus 190 ~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~a~~~g~~-------~p~~~~~ 260 (291)
+|++.|+|++++.+.++..+ .+ ++....+.||+ ...++.||+.++.+.+++.|++ +++++++
T Consensus 255 l~e~~GiD~~~v~~~~~~~~----~~-----ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~ 325 (478)
T 3g79_A 255 YCEAMGINVYDVRTGVDSLK----GE-----GITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLA 325 (478)
T ss_dssp HHHHTTCCHHHHHHHHHTSC----CS-----SSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHH
T ss_pred HHHHcCCCHHHHHHHHCCCc----hh-----hhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHHHHH
Confidence 99999999999999998753 11 23334556655 4567999999999999999987 8999887
Q ss_pred HHHHHHH
Q 022834 261 NEAFKKA 267 (291)
Q Consensus 261 ~~~~~~~ 267 (291)
.+..+..
T Consensus 326 ~~iN~~~ 332 (478)
T 3g79_A 326 RKVNDFM 332 (478)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-31 Score=233.78 Aligned_cols=249 Identities=18% Similarity=0.160 Sum_probs=205.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC------------------CCcccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH------------------GATVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~------------------g~~~~~~~~~~~~~~dvvii 62 (291)
|||+|||+|.||..+|..|++ ||+|++||+++++++.+.+. ++..++++.+++++||+||+
T Consensus 37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDvVii 115 (432)
T 3pid_A 37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVII 115 (432)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCEEEE
Confidence 799999999999999999998 99999999999999887752 35567788899999999999
Q ss_pred ecCCH----------HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccce
Q 022834 63 MLADP----------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQL 132 (291)
Q Consensus 63 ~vp~~----------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 132 (291)
|||++ ..+++++ +++.+ ++++++||+.||+.|.+.+++.+.+.+.+ +..+|.++.+..+..+.+
T Consensus 116 aVPt~~~~~~~~~Dl~~V~~v~---~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~--v~~sPe~~~~G~A~~~~l 189 (432)
T 3pid_A 116 ATPTDYDPKTNYFNTSTVEAVI---RDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDN--VIFSPEFLREGRALYDNL 189 (432)
T ss_dssp CCCCEEETTTTEEECHHHHHHH---HHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCC--EEECCCCCCTTSHHHHHH
T ss_pred eCCCccccccccccHHHHHHHH---HHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhcc--EeecCccCCcchhhhccc
Confidence 99987 2677887 77888 88999999999999999999998876653 456999988877766555
Q ss_pred ---EEEecCCHHHHHHHHHHHHH--hcc-ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 133 ---VILSAGEKALYDEAISALNV--IGK-KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 133 ---~~~~~g~~~~~~~~~~ll~~--~g~-~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
.+++|++++..+++.++|.. ++. ..++.++++.|++.|++.|.+.+..+++++|+..+|++.|+|++++++.++
T Consensus 190 ~p~rIvvG~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~GiD~~~v~~~~~ 269 (432)
T 3pid_A 190 HPSRIVIGERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQGLNSKQIIEGVC 269 (432)
T ss_dssp SCSCEEESSCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCceEEecCCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHc
Confidence 67889988889999999987 443 235566789999999999999999999999999999999999999999998
Q ss_pred hcCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 207 LGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 207 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
.....++.+ ....+|+...+..||..++...+ .|++.++++++.+..+..
T Consensus 270 ~dprig~~~---------~~pg~G~GG~C~pkD~~~L~~~~--~~~~~~li~~~~~~N~~~ 319 (432)
T 3pid_A 270 LDPRIGNHY---------NNPSFGYGGYCLPKDTKQLLANY--ESVPNNIIAAIVDANRTR 319 (432)
T ss_dssp TSTTTCSSS---------CCCCSCCCTTTHHHHHHHHHHHT--TTSCCSHHHHHHHHHHHH
T ss_pred cCCCCCccc---------CCCCCCCcccchhhhHHHHHHHh--cCCchhHHHHHHHHHHhh
Confidence 764221111 01233566778999999887554 588899999988776543
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-31 Score=240.51 Aligned_cols=252 Identities=15% Similarity=0.125 Sum_probs=201.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC--------------------CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------------ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------------~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+|.||..+|..|+++||+|++||+++++++.+++.+ +..++++++.++++|+|
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDvv 88 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQ 88 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSEE
T ss_pred ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCEE
Confidence 8999999999999999999999999999999999999887642 24456777788899999
Q ss_pred EEecCCH---------HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc---CCcE-EEcccCCChHhh
Q 022834 61 IGMLADP---------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK---GGHF-LEAPVSGSKQPA 127 (291)
Q Consensus 61 ii~vp~~---------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~ 127 (291)
|+|||++ ..+++++ +++.+.++++++|++.|+..|.+.+.+.+.+.+. + .| ++.++..+|...
T Consensus 89 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~~v~~~Pe~~ 164 (478)
T 2y0c_A 89 FIAVGTPPDEDGSADLQYVLAAA---RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKR-GGDQMFSVVSNPEFL 164 (478)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHT-TCCCCEEEEECCCCC
T ss_pred EEEeCCCcccCCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCC-CCCccEEEEEChhhh
Confidence 9999886 7889998 7888888899999999998898888887776553 3 11 222223333333
Q ss_pred cccce--------EEEecCC-H----HHHHHHHHHHHHhcc--ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022834 128 ETGQL--------VILSAGE-K----ALYDEAISALNVIGK--KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE 192 (291)
Q Consensus 128 ~~g~~--------~~~~~g~-~----~~~~~~~~ll~~~g~--~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~ 192 (291)
..|.. .+++|++ + +..+.++++|+.+.. .+++.++++.++|.|++.|.+....+++++|+..+|+
T Consensus 165 ~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~la~ 244 (478)
T 2y0c_A 165 KEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLAD 244 (478)
T ss_dssp CTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 3556654 5 678899999998764 5788888999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCc--ccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 193 KSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAF--PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 193 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
+.|++.+++.+.++.. +++....+.||+ ...++.||++++.+.++++|+++|+++++++++...
T Consensus 245 ~~Gid~~~v~~~i~~~-----------~rig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~~pl~~~v~~in~~~ 310 (478)
T 2y0c_A 245 RFGADIEAVRRGIGSD-----------PRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQ 310 (478)
T ss_dssp HTTCCHHHHHHHHHTS-----------TTTCSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHhcC-----------CccCcccCCCCcccccCcCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Confidence 9999999999888743 122223344444 444679999999999999999999999999888754
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-31 Score=238.20 Aligned_cols=252 Identities=16% Similarity=0.116 Sum_probs=199.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-------------------C-CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+|.||..++..|+++||+|++||+++++++.+.+. | +..+++++++++++|+|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv 80 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence 899999999999999999999999999999999999888763 2 44566788888899999
Q ss_pred EEecCCHHH---------HHHHHhccCccccccCC---CcEEEEcCCCCHHH-HHHHHHHHHhc-CCcE-EEcccCCChH
Q 022834 61 IGMLADPAA---------ALSVVFDKGGVLEQICP---GKGYIDMSTVDHET-SIKISRAITSK-GGHF-LEAPVSGSKQ 125 (291)
Q Consensus 61 ii~vp~~~~---------~~~v~~~~~~l~~~l~~---~~~vv~~s~~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~ 125 (291)
|+|||++.. +++++ +++.+.+++ +++||+.|+..+.+ .+.+.+.+.+. +..+ ++.++...|.
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe 157 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVC---REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE 157 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH---HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred EEEcCCCcccCCCcchHHHHHHH---HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcc
Confidence 999998765 88888 778888877 89999999998887 67777777653 4322 1222222222
Q ss_pred hhcccce--------EEEecCC-HHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022834 126 PAETGQL--------VILSAGE-KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGL 196 (291)
Q Consensus 126 ~~~~g~~--------~~~~~g~-~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~ 196 (291)
....|.. .++++++ ++..+.++++++.++..++. ++++.+.|.|++.|.+....+++++|+..+|++.|+
T Consensus 158 ~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gi 236 (436)
T 1mv8_A 158 FLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGV 236 (436)
T ss_dssp CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2222222 3556654 88889999999999986555 678999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCcccccccccccc--cCCCCC--CcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 197 DPRTLLDVLDLGGIANPMFKGKGPTML--QSNYAP--AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 197 ~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~--~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
+.+++.+.+.... ++. ...+.| ++...++.||+.++.+.++++|+++|++++++++.+..
T Consensus 237 d~~~v~~~~~~~~-----------r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~pl~~~v~~in~~~ 300 (436)
T 1mv8_A 237 DGREVMDVICQDH-----------KLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQ 300 (436)
T ss_dssp CHHHHHHHHTTCT-----------TTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHHHHHH
T ss_pred CHHHHHHHhcCCC-----------CCCCcccCCCCcccccCcCcHhhHHHHHHHHHHcCCCcHHHHHHHHHHhHh
Confidence 9999999887532 111 233444 56677899999999999999999999999988876543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-31 Score=237.04 Aligned_cols=248 Identities=13% Similarity=0.119 Sum_probs=199.1
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHHH-------------------CCCcccCCHHHHHhhCCE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI 59 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~~dv 59 (291)
|||+|||+|.||..++..|+++ ||+|++||+++++++.+.+ .++..++++.++++++|+
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv 85 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL 85 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence 6899999999999999999998 8999999999998887542 245556788888899999
Q ss_pred EEEecCCHHH--------------HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChH
Q 022834 60 TIGMLADPAA--------------ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ 125 (291)
Q Consensus 60 vii~vp~~~~--------------~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (291)
||+|||++.. +.++. +++.+.++++++||+.|++.|.+.+.+.+.+.+.+..+++.++.++|.
T Consensus 86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe 162 (467)
T 2q3e_A 86 VFISVNTPTKTYGMGKGRAADLKYIEACA---RRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPE 162 (467)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCC
T ss_pred EEEEcCCchhhccccccCCCcHHHHHHHH---HHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHH
Confidence 9999987664 34555 567777888999999999999998888888877654445555555555
Q ss_pred hhcccceE--------EEecC-----CHHHHHHHHHHHHHh-ccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022834 126 PAETGQLV--------ILSAG-----EKALYDEAISALNVI-GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLA 191 (291)
Q Consensus 126 ~~~~g~~~--------~~~~g-----~~~~~~~~~~ll~~~-g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~ 191 (291)
....|... +++++ +++..+.++++++.+ +..++++++++.+++.|++.|.+....+++++|+..+|
T Consensus 163 ~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~ 242 (467)
T 2q3e_A 163 FLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALC 242 (467)
T ss_dssp CCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555543 56676 677889999999999 77788888899999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCC--CcccccHHHHHHHHHHHHhhcCCC--chHHHHHHH
Q 022834 192 EKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAP--AFPLKHQQKDMRLALALGDENAVS--MPIAAAANE 262 (291)
Q Consensus 192 ~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~a~~~g~~--~p~~~~~~~ 262 (291)
++.|++++++.++++.....++ ..+.| |+...++.||+.++.+.+++.|++ .++++++.+
T Consensus 243 ~~~Gid~~~v~~~~~~~~~~~~-----------~~~~pg~g~gg~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 306 (467)
T 2q3e_A 243 EATGADVEEVATAIGMDQRIGN-----------KFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306 (467)
T ss_dssp HHHTCCHHHHHHHHHTSTTTCS-----------SSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCcCHHHHHHHHcCCCCCCc-----------cccCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 9999999999999987642111 11233 456677999999999999999987 555555443
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=232.44 Aligned_cols=252 Identities=14% Similarity=0.074 Sum_probs=201.0
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHHHCC-------------------CcccCCHHHHHhhCCE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHG-------------------ATVGGSPAEVIKKCTI 59 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g-------------------~~~~~~~~~~~~~~dv 59 (291)
|||+|||+|.||..+|..|+++ ||+|++||+++++++.+.+.+ +..++++.+.++++|+
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv 89 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL 89 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence 6999999999999999999998 799999999999998886522 3445567788889999
Q ss_pred EEEecCCHH--------------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHh-cC----C--cEEEc
Q 022834 60 TIGMLADPA--------------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS-KG----G--HFLEA 118 (291)
Q Consensus 60 vii~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~-~~----~--~~~~~ 118 (291)
||+|||++. .+++++ +++.+.++++++||+.||..|.+.+.+.+.+.+ .+ . .+...
T Consensus 90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~~~ 166 (481)
T 2o3j_A 90 IFISVNTPTKMYGRGKGMAPDLKYVESVS---RTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSN 166 (481)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEEEC
T ss_pred EEEecCCccccccccccCCCcHHHHHHHH---HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEEeC
Confidence 999998764 377777 778888889999999999999999988888776 44 2 23466
Q ss_pred ccCCChHhhcc---cceEEEecCCH-----HHHHHHHHHHHHhcc-ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 022834 119 PVSGSKQPAET---GQLVILSAGEK-----ALYDEAISALNVIGK-KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLV 189 (291)
Q Consensus 119 ~~~~~~~~~~~---g~~~~~~~g~~-----~~~~~~~~ll~~~g~-~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~ 189 (291)
|.+..+-.+.. ....+++|++. +..+.++++++.++. .+++.++++.++|.|++.|.+....+++++|+..
T Consensus 167 Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~~ 246 (481)
T 2o3j_A 167 PEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISA 246 (481)
T ss_dssp CCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75544332211 11135566643 567889999999985 7788888999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCc--ccccHHHHHHHHHHHHhhcCCC--chHHHHHHHHHH
Q 022834 190 LAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAF--PLKHQQKDMRLALALGDENAVS--MPIAAAANEAFK 265 (291)
Q Consensus 190 ~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~a~~~g~~--~p~~~~~~~~~~ 265 (291)
+|++.|++++++.+.++.+.. +....+.||+ ...++.||+.++.+.|++.|++ +|+++++.+...
T Consensus 247 la~~~Gid~~~v~~~~~~~~r-----------i~~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~~N~ 315 (481)
T 2o3j_A 247 VCEATGAEISEVAHAVGYDTR-----------IGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININN 315 (481)
T ss_dssp HHHHHSCCHHHHHHHHHTSTT-----------TCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCHHHHHHHHccCCC-----------CCCCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHHHHH
Confidence 999999999999999987631 1122345554 6677999999999999999999 899888776554
Q ss_pred H
Q 022834 266 K 266 (291)
Q Consensus 266 ~ 266 (291)
.
T Consensus 316 ~ 316 (481)
T 2o3j_A 316 W 316 (481)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=224.26 Aligned_cols=247 Identities=16% Similarity=0.116 Sum_probs=197.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCC------------------cccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA------------------TVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~------------------~~~~~~~~~~~~~dvvii 62 (291)
|||+|||+|.||..++..|++ ||+|++|||++++++.+.+.+. ..++++.+.++++|+||+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 899999999999999999999 9999999999999999887664 344567788889999999
Q ss_pred ecCCHH----------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhc---c
Q 022834 63 MLADPA----------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAE---T 129 (291)
Q Consensus 63 ~vp~~~----------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 129 (291)
|||.+. .+++++ +++.+ ++++++||+.|+..|.+.+.+.+.+.+. .++.+|.+..+-.+. .
T Consensus 80 avpt~~~~~~~~~dl~~v~~v~---~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~ 153 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQHVETVI---KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL 153 (402)
T ss_dssp CCCCCEETTTTEECCHHHHHHH---HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred ecCCCcccCCCCccHHHHHHHH---HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhccc
Confidence 998864 588888 77878 8889999999999999988888776543 566788665543322 1
Q ss_pred cceEEEecCCH-------HHHHHHHHHHHHhccc---eEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 022834 130 GQLVILSAGEK-------ALYDEAISALNVIGKK---AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPR 199 (291)
Q Consensus 130 g~~~~~~~g~~-------~~~~~~~~ll~~~g~~---~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~ 199 (291)
....+++|++. +..+.+.++|...+.. +++.++++.++|.|++.|.+.+..+++++|...+|++.|++.+
T Consensus 154 ~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~ 233 (402)
T 1dlj_A 154 YPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSH 233 (402)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred CCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 22225667755 5567778888764332 5777789999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcccccccccccccCCCCC--CcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 200 TLLDVLDLGGIANPMFKGKGPTMLQSNYAP--AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 200 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
++.+.++..... ....+.| |+...++.||+.++...++ |+++|+++++.+..+..
T Consensus 234 ~v~~~~~~~~ri-----------~~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~~~l~~~~~~~N~~~ 290 (402)
T 1dlj_A 234 MIIQGISYDDRI-----------GMHYNNPSFGYGGYSLPKDTKQLLANYN--NIPQTLIEAIVSSNNVR 290 (402)
T ss_dssp HHHHHHHTSTTT-----------CSSSCCCCSSCCSSHHHHHHHHHHHHHT--TSSCSHHHHHHHHHHHH
T ss_pred HHHHHhccCCCC-----------CcCCCCCCCccCCccHHhhHHHHHHHhc--CCChHHHHHHHHHHHHh
Confidence 999999866421 1112334 5677789999999998885 88999999987766544
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=223.84 Aligned_cols=248 Identities=15% Similarity=0.134 Sum_probs=189.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC-CHHHH---------------HhhCCEEEEecC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG-SPAEV---------------IKKCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~-~~~~~---------------~~~~dvvii~vp 65 (291)
|..|||+|.||..+|..|+++||+|++||+++++++.+++....+.. ..+++ +++||+||+|||
T Consensus 13 ~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvii~Vp 92 (431)
T 3ojo_A 13 KLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVP 92 (431)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEEECCC
T ss_pred ccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEEEEeC
Confidence 78999999999999999999999999999999999999874332211 11211 246999999999
Q ss_pred CHH-----------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHh-cCC------cEEEcccCCChHhh
Q 022834 66 DPA-----------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS-KGG------HFLEAPVSGSKQPA 127 (291)
Q Consensus 66 ~~~-----------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~ 127 (291)
++. .+..+. +++.+.++++++||+.||+.|.+.+++.+.+.+ .+. .++++|.+..+-.+
T Consensus 93 Tp~~~~~~~~~Dl~~V~~~~---~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G~A 169 (431)
T 3ojo_A 93 TPNNDDQYRSCDISLVMRAL---DSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKI 169 (431)
T ss_dssp CCBCSSSSCBBCCHHHHHHH---HHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCCCCTTSH
T ss_pred CCccccccCCccHHHHHHHH---HHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCcCCCcch
Confidence 876 255555 788888999999999999999999999876544 443 56799977655443
Q ss_pred ccc---ceEEEecCCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022834 128 ETG---QLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDV 204 (291)
Q Consensus 128 ~~g---~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~ 204 (291)
..+ ...++.|++++..+.++++++.++..++++++++.|++.|+++|++.+..+++++|+..+|++.|+|.+++.+.
T Consensus 170 ~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~ 249 (431)
T 3ojo_A 170 LEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEM 249 (431)
T ss_dssp HHHHHHSCEEEEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hhcccCCCEEEEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 322 22567788999999999999999988888888999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 022834 205 LDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK 266 (291)
Q Consensus 205 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~ 266 (291)
++..+.... -.+.+|+...+..||..++...+++.+ ++++++.+..+.
T Consensus 250 ~~~~~ri~~-----------l~pG~G~GG~C~pkD~~~L~~~a~~~~---~li~~~~~iN~~ 297 (431)
T 3ojo_A 250 ANKHPRVNI-----------HQPGPGVGGHCLAVDPYFIIAKDPENA---KLIQTGREINNS 297 (431)
T ss_dssp HTTSTTCCC-----------CCCCSCCCCCCBCSCC---------CC---HHHHHHHHHHHT
T ss_pred HccCCCccc-----------CCCCCCccccchhhhHHHHHHHHHHHh---HHHHHHHHHHHH
Confidence 986642210 112345666778899999998888877 777776655543
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=219.37 Aligned_cols=274 Identities=16% Similarity=0.136 Sum_probs=203.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC--------------CcccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|.||++++..|+++||+|++|+|++++++.+.+.+ +..++++.++++++|+||+|||.
T Consensus 30 mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp~ 109 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPS 109 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCCH
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCCH
Confidence 6899999999999999999999999999999999998887754 23456888889999999999954
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEcCCCCH-HH---HHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHH
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDMSTVDH-ET---SIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKAL 142 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 142 (291)
+.+++++ +++.+.++++++||+++++.. .+ .+.+.+.++...+.++..|.+............++.+.+.+.
T Consensus 110 -~~~~~vl---~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~~~ 185 (356)
T 3k96_A 110 -FAFHEVI---TRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQF 185 (356)
T ss_dssp -HHHHHHH---HHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCHHH
T ss_pred -HHHHHHH---HHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCHHH
Confidence 6899999 888888988999999988643 22 133444444344556788877665554444554566678899
Q ss_pred HHHHHHHHHHhccceEeeCCCChhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022834 143 YDEAISALNVIGKKAFFLGEVGNGAKM-----------------KLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVL 205 (291)
Q Consensus 143 ~~~~~~ll~~~g~~~~~~~~~~~a~~~-----------------k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~ 205 (291)
.+.++++|+..+.+++...++-..+|. |+..|...+.+..+++|+.+++++.|.++++++++.
T Consensus 186 ~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~gl~ 265 (356)
T 3k96_A 186 SKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTGLA 265 (356)
T ss_dssp HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTT
T ss_pred HHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhhcccc
Confidence 999999999999998888885555554 444566667788899999999999999999988654
Q ss_pred hhc----CCCccccccc--ccccccCCCCCC------cccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCC
Q 022834 206 DLG----GIANPMFKGK--GPTMLQSNYAPA------FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLG 273 (291)
Q Consensus 206 ~~~----~~~s~~~~~~--~~~~~~~~~~~~------~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~ 273 (291)
..+ ++.++..+++ +..+.++ ++.. .......++.+.+.++++++|+++|+++++++++. +
T Consensus 266 g~gDl~~tc~s~~sRN~~~G~~l~~g-~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~il~-------~ 337 (356)
T 3k96_A 266 GLGDLVLTCTDNQSRNRRFGLALGEG-VDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRILH-------E 337 (356)
T ss_dssp THHHHHHHHHCTTCHHHHHHHHHHHT-CCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------S
T ss_pred hhhHHHHhccCCCCccHHHHHHHHCC-CCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHHHh-------C
Confidence 322 2333333333 2233322 1110 12445788999999999999999999999998875 3
Q ss_pred CCcHHHHHHHHHh
Q 022834 274 DNDFSAVFEVVKD 286 (291)
Q Consensus 274 ~~d~~~~~~~~~~ 286 (291)
..+...+++.|-.
T Consensus 338 ~~~~~~~~~~l~~ 350 (356)
T 3k96_A 338 DLDPQQAVQELLE 350 (356)
T ss_dssp CCCHHHHHHHHHS
T ss_pred CCCHHHHHHHHHc
Confidence 4555565555543
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-28 Score=207.32 Aligned_cols=262 Identities=15% Similarity=0.138 Sum_probs=188.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC------------CHHHHHh---hCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG------------SPAEVIK---KCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~------------~~~~~~~---~~dvvii~vp 65 (291)
|||+|||+|.||..++..|+++||+|++|+|++++.+.+.+.|..... +..++.+ ++|+||+|+|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~ 83 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK 83 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence 799999999999999999999999999999999999988876643321 3344444 8999999995
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEEcccCCChHh--hcccceEEEe--c
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQP--AETGQLVILS--A 137 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~g~~~~~~--~ 137 (291)
+..+++++ +++.+.++++++|++++++.+ ..+.+.+.+.+. +..+.+++..++... ...|...+.. +
T Consensus 84 -~~~~~~v~---~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~ 158 (316)
T 2ew2_A 84 -AQQLDAMF---KAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDP 158 (316)
T ss_dssp -HHHHHHHH---HHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSG
T ss_pred -cccHHHHH---HHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCC
Confidence 56788898 788888888999999988654 234454444433 111222333332222 2344444432 3
Q ss_pred CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCC
Q 022834 138 GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM---------------------GCMMNTFSEGLVLAEKSGL 196 (291)
Q Consensus 138 g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~---------------------~~~~~~~~E~~~~~~~~g~ 196 (291)
++++..+.+.++|+.+|.++++.+++..+.|.|++.|... ..+..++.|+..++++.|+
T Consensus 159 ~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~G~ 238 (316)
T 2ew2_A 159 SGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAI 238 (316)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4678889999999999999888888999999999999753 3456788999999999999
Q ss_pred CH--HHHHHHHhhcCCCcccccccccccccCCC-CCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 197 DP--RTLLDVLDLGGIANPMFKGKGPTMLQSNY-APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 197 ~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
++ +.+.+.+..........+++ +.+. .|+ ..++..+ +.++++++++.++++|+++|+++++++++.....+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~-~sm~-~d~~~~g~~~E-~~~~~~~~~~~a~~~gv~~P~~~~~~~~~~~~~~~ 312 (316)
T 2ew2_A 239 YLDQAEVYTHIVQTYDPNGIGLHY-PSMY-QDLIKNHRLTE-IDYINGAVWRKGQKYNVATPFCAMLTQLVHGKEEL 312 (316)
T ss_dssp CCCHHHHHHHHHHTTCTTTTTTSC-CHHH-HHHTTTCCCCS-GGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHhccccCCCCC-cHHH-HHHHHcCCcch-HHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 86 45666665321110001111 1111 233 3455455 78999999999999999999999999999876653
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=201.53 Aligned_cols=266 Identities=15% Similarity=0.163 Sum_probs=184.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC-----------CcccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-----------ATVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-----------~~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|||+|+||++++..|+++||+|++|+|++++++.+.+.| +..++++.+ ++++|+||+||| +++
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~~~ 92 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-VQY 92 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-GGG
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-HHH
Confidence 7999999999999999999999999999999999999988776 355677888 889999999996 588
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhc-C--CcEEEcccCCChHhhcccceE-EEecCCHHHHH
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSK-G--GHFLEAPVSGSKQPAETGQLV-ILSAGEKALYD 144 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~g~~~-~~~~g~~~~~~ 144 (291)
+++++ +++.+ ++++||+++++ .+.+.+.+.+.+.+. + ..++..|... .....|... +..++.+ .+
T Consensus 93 ~~~v~---~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~--~~~~~g~~~~~~~g~~~--~~ 162 (335)
T 1z82_A 93 IREHL---LRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHA--EEVAKKLPTAVTLAGEN--SK 162 (335)
T ss_dssp HHHHH---TTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCH--HHHHTTCCEEEEEEETT--HH
T ss_pred HHHHH---HHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccH--HHHhCCCceEEEEEehh--HH
Confidence 99999 66665 78899999976 443334444444432 1 2233455322 122234432 3333333 78
Q ss_pred HHHHHHHHhccceEeeCCCChhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022834 145 EAISALNVIGKKAFFLGEVGNGAKMKLVVNM-----------------IMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 207 (291)
Q Consensus 145 ~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~-----------------~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~ 207 (291)
.++++|+..|.++++.+++-...|.|++.|. ....+..++.|+..++++.|++++++.++...
T Consensus 163 ~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l~~~ 242 (335)
T 1z82_A 163 ELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLAGI 242 (335)
T ss_dssp HHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTH
T ss_pred HHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcccccc
Confidence 8999999999988888776666676666654 33456688999999999999999877653211
Q ss_pred c----CCCccccccc--ccccccCCCCC------CcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCC
Q 022834 208 G----GIANPMFKGK--GPTMLQSNYAP------AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDN 275 (291)
Q Consensus 208 ~----~~~s~~~~~~--~~~~~~~~~~~------~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~ 275 (291)
+ +..++..+++ .+.+..+ +.+ .+....+.+|++++++.++++|+++|+++++++++. ...
T Consensus 243 ~~~~~t~~s~~~~n~~~~~~~~~g-~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~-------~~~ 314 (335)
T 1z82_A 243 GDLMVTCNSRYSRNRRFGELIARG-FNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVY-------EGK 314 (335)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHT-CCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------SCC
T ss_pred cceeeeccCccCcHHHHHHHHhCC-CCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh-------CCC
Confidence 0 0111111111 1122111 111 122345689999999999999999999999998874 345
Q ss_pred cHHHHHHHHHh
Q 022834 276 DFSAVFEVVKD 286 (291)
Q Consensus 276 d~~~~~~~~~~ 286 (291)
+...+++.|-+
T Consensus 315 ~~~~~~~~l~~ 325 (335)
T 1z82_A 315 PPLQSMRDLMR 325 (335)
T ss_dssp CHHHHHHHHHC
T ss_pred CHHHHHHHHHc
Confidence 66666666643
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-27 Score=202.90 Aligned_cols=252 Identities=14% Similarity=0.142 Sum_probs=179.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC---C----c-ccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---A----T-VGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g---~----~-~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
|||+|||+|.||..++..|+++||+|++|+|++++.+.+...+ . . ..++ .+.++++|+||+|||. ..+++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~-~~~~~ 78 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKA-WQVSD 78 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCG-GGHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecH-HhHHH
Confidence 8999999999999999999999999999999988766544322 1 0 1233 4567789999999965 56888
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHh--cCCcEEEcccCCC-hHhhcccceEEEe-cCCHHHHHHHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS--KGGHFLEAPVSGS-KQPAETGQLVILS-AGEKALYDEAIS 148 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~~~~-~g~~~~~~~~~~ 148 (291)
++ +++.+.++++++|++++++. ...+.+.+.+++ .+..+..+...++ ......|.+.+.. +++++..+.+++
T Consensus 79 v~---~~l~~~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~g~~~i~~~~~~~~~~~~~~~ 154 (291)
T 1ks9_A 79 AV---KSLASTLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLAD 154 (291)
T ss_dssp HH---HHHHTTSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHHH
T ss_pred HH---HHHHhhCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCCEEEEecccceEEccCCCCcchHHHHHH
Confidence 98 77888888899999987764 222334333332 1211111122232 2233445544433 345667789999
Q ss_pred HHHHhccceEeeCCCChhHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCH--HHH----HHH
Q 022834 149 ALNVIGKKAFFLGEVGNGAKMKLVVNMIM------------------GCMMNTFSEGLVLAEKSGLDP--RTL----LDV 204 (291)
Q Consensus 149 ll~~~g~~~~~~~~~~~a~~~k~~~n~~~------------------~~~~~~~~E~~~~~~~~g~~~--~~~----~~~ 204 (291)
+|+..|.++++.++++.+.|.|++.|... ..+..++.|+..++++.|+++ +.+ .++
T Consensus 155 ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~ 234 (291)
T 1ks9_A 155 ILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQV 234 (291)
T ss_dssp HHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999988999999999999988 577889999999999999986 444 344
Q ss_pred Hhhc-CCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 022834 205 LDLG-GIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKAR 268 (291)
Q Consensus 205 ~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 268 (291)
+... ...+++++.. ..+...+.. .+.+++++.++++|+++|++++++++++...
T Consensus 235 ~~~~~~~~ssm~~d~---------~~g~~~e~~-~~~g~~~~~a~~~gv~~P~~~~~~~~~~~~e 289 (291)
T 1ks9_A 235 IDATAENISSMLQDI---------RALRHTEID-YINGFLLRRARAHGIAVPENTRLFEMVKRKE 289 (291)
T ss_dssp HHHTTTCCCHHHHHH---------HTTCCCSGG-GTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HhcCCCCCChHHHHH---------HcCCccHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 4332 3344454322 122222222 4678899999999999999999999987654
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=192.13 Aligned_cols=248 Identities=13% Similarity=0.142 Sum_probs=180.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+|||+|.||..++..|+++| ++|++|+|++++.+.+.+. |+....+..+++ ++|+||+|+| +.++++++ +
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~---~ 75 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC---K 75 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH---T
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH---H
Confidence 89999999999999999999999 9999999999999988875 888877887878 9999999997 78899999 6
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecC--CHHHHHHHHHHHHHhccc
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKK 156 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~~g~~ 156 (291)
++.+ + +++|++++++.+. +.+.+.++. +..++.. +.+.+.....|...++.++ +++..+.++++|+.+|..
T Consensus 76 ~l~~--~-~~ivv~~~~g~~~--~~l~~~~~~-~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~ 148 (263)
T 1yqg_A 76 NIRT--N-GALVLSVAAGLSV--GTLSRYLGG-TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLT 148 (263)
T ss_dssp TCCC--T-TCEEEECCTTCCH--HHHHHHTTS-CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEE
T ss_pred Hhcc--C-CCEEEEecCCCCH--HHHHHHcCC-CCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCE
Confidence 6765 4 8899998555432 455555543 4567766 5666666666666566666 788899999999999987
Q ss_pred eEeeC-CCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcc-cccccc--c-ccccCCCCC
Q 022834 157 AFFLG-EVGNGAKMKLV--VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP-MFKGKG--P-TMLQSNYAP 229 (291)
Q Consensus 157 ~~~~~-~~~~a~~~k~~--~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~-~~~~~~--~-~~~~~~~~~ 229 (291)
+ +++ +........+. .+.+...++..+.|+ +.+.|++++++.+++..+...++ ++.... + .+....++|
T Consensus 149 ~-~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~---~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (263)
T 1yqg_A 149 V-WLDDEEKMHGITGISGSGPAYVFYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSK 224 (263)
T ss_dssp E-ECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCT
T ss_pred E-EeCChhhccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence 6 665 32111111111 122233334444555 88899999999998875433333 333333 3 455566778
Q ss_pred CcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCC
Q 022834 230 AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 271 (291)
Q Consensus 230 ~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 271 (291)
++++..+.+++ ++.|++.|+.+++.+.++++.+.|
T Consensus 225 ~~~~~~~l~~l-------~~~~~~~~~~~a~~~~~~~~~~~~ 259 (263)
T 1yqg_A 225 GGTTHEAVEAF-------RRHRVAEAISEGVCACVRRSQEME 259 (263)
T ss_dssp TSHHHHHHHHH-------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHH
Confidence 87766665555 678999999999999999988754
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=197.71 Aligned_cols=253 Identities=15% Similarity=0.117 Sum_probs=192.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--------------------CCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~~dvvi 61 (291)
+|+|||+|.||..+|..|+++||+|+++|.++++++.+++. ...++++..+++.++|++|
T Consensus 23 ~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~~~ 102 (444)
T 3vtf_A 23 SLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDATF 102 (444)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSEEE
T ss_pred EEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCceE
Confidence 79999999999999999999999999999999998887642 1345678888889999999
Q ss_pred EecCCHH---------HHHHHHhccCccccccC---CCcEEEEcCCCCHHHHHHHHHHHHh-c----CCcEEEcccCC--
Q 022834 62 GMLADPA---------AALSVVFDKGGVLEQIC---PGKGYIDMSTVDHETSIKISRAITS-K----GGHFLEAPVSG-- 122 (291)
Q Consensus 62 i~vp~~~---------~~~~v~~~~~~l~~~l~---~~~~vv~~s~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~-- 122 (291)
+|||+|. .++.+. +.+.+.++ ++++||..||+.|.+.+++...+.+ . .+.+..+|-+-
T Consensus 103 I~VpTP~~~d~~~Dl~~v~~a~---~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~PErl~e 179 (444)
T 3vtf_A 103 IAVGTPPAPDGSADLRYVEAAA---RAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFLRE 179 (444)
T ss_dssp ECCCCCBCTTSSBCCHHHHHHH---HHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECCCCCCT
T ss_pred EEecCCCCCCCCCCcHHHHHHH---HHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCcccccC
Confidence 9998752 466666 55666553 5789999999999998887654333 2 23344666432
Q ss_pred -ChHhhcccceEEEecC-CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022834 123 -SKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRT 200 (291)
Q Consensus 123 -~~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~ 200 (291)
...........+++|+ ++...+.+.++++.+...++++ ++..|++.|++.|.+.++.+++++|...+|++.|+|..+
T Consensus 180 G~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~~-~~~~AE~~Kl~eN~~ravnIa~~NEla~ice~~GiDv~e 258 (444)
T 3vtf_A 180 GSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLVM-KPREAELVKYASNVFLALKISFANEVGLLAKRLGVDTYR 258 (444)
T ss_dssp TSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEEE-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred CccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEEe-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 2222212222244454 6777788899998887665554 568999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 201 LLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 201 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
+.+.++......+.+ -.+.+|+...+..||..++...+++.|++.++++++.+..+..
T Consensus 259 V~~a~~~d~rig~~~---------l~PG~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN~~~ 316 (444)
T 3vtf_A 259 VFEAVGLDKRIGRHY---------FGAGLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEYM 316 (444)
T ss_dssp HHHHHHTSTTSCSTT---------CCCSSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCCC---------CCCCCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHHHHH
Confidence 999998653222111 1223456677899999999999999999999999877766543
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-26 Score=198.88 Aligned_cols=248 Identities=12% Similarity=0.101 Sum_probs=173.9
Q ss_pred CeEEEEecChhhHHHHHHHHhC-----C-CcEEEEcCCcchhHHHHH-CCCcccC-------------CHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-----G-FKVTVWNRTLSKCDELVA-HGATVGG-------------SPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-----g-~~V~~~~r~~~~~~~l~~-~g~~~~~-------------~~~~~~~~~dvv 60 (291)
|||+|||+|.||.+++..|+++ | |+|++|+| +++.+.+.+ .|..+.. +..+.++++|+|
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 87 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI 87 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence 6899999999999999999999 9 99999999 888898888 7765542 334556789999
Q ss_pred EEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHh----cCCcEEEcccCCChHh--hcccceEE
Q 022834 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS----KGGHFLEAPVSGSKQP--AETGQLVI 134 (291)
Q Consensus 61 ii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~g~~~~ 134 (291)
|+|||. .++++++ +++.+.++++++||+++++.. ..+.+.+.+++ .++.++++++.++... ...+...+
T Consensus 88 il~vk~-~~~~~v~---~~i~~~l~~~~~iv~~~nG~~-~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~~~ 162 (317)
T 2qyt_A 88 LFCTKD-YDMERGV---AEIRPMIGQNTKILPLLNGAD-IAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRELFY 162 (317)
T ss_dssp EECCSS-SCHHHHH---HHHGGGEEEEEEEEECSCSSS-HHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEecCc-ccHHHHH---HHHHhhcCCCCEEEEccCCCC-cHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCceEE
Confidence 999966 5678888 778888877889999888743 33455555544 2334556666543222 22233321
Q ss_pred Eec-----CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHH-------------------HHHHHHHHHHH
Q 022834 135 LSA-----GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC-------------------MMNTFSEGLVL 190 (291)
Q Consensus 135 ~~~-----g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~-------------------~~~~~~E~~~~ 190 (291)
++ ++.+.. .+.++|+..|..+++.+++..+.|.|++.|...+. +..++.|+..+
T Consensus 163 -ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~~v 240 (317)
T 2qyt_A 163 -FGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAEL 240 (317)
T ss_dssp -EECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHHHH
T ss_pred -EcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 236666 89999999999988888899999999999987754 44889999999
Q ss_pred HHHcCCCHH--HHHHHHhhc-----CCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 022834 191 AEKSGLDPR--TLLDVLDLG-----GIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEA 263 (291)
Q Consensus 191 ~~~~g~~~~--~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~ 263 (291)
+++.|++++ .+.+.+... ...+++++ |+..++..+. ....+++++.++++|+++|+++.++++
T Consensus 241 ~~a~G~~~~~~~~~~~~~~~~~~~~~~~~sm~~---------d~~~g~~~E~-~~~~g~~~~~a~~~gv~~P~~~~~~~~ 310 (317)
T 2qyt_A 241 FRAKYGQVPDDVVQQLLDKQRKMPPESTSSMHS---------DFLQGGSTEV-ETLTGYVVREAEALRVDLPMYKRMYRE 310 (317)
T ss_dssp HHHHTSCCCSSHHHHHHHHHHHC------------------------------CTTTHHHHHHHHHTTCCCHHHHHHHHT
T ss_pred HHHcCCCCChHHHHHHHHHHhccCCCCCChHHH---------HHHcCCccCH-HHHhhHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999863 555555431 11222322 2323322211 112678999999999999999999987
Q ss_pred HHH
Q 022834 264 FKK 266 (291)
Q Consensus 264 ~~~ 266 (291)
+..
T Consensus 311 ~~~ 313 (317)
T 2qyt_A 311 LVS 313 (317)
T ss_dssp TCC
T ss_pred HHH
Confidence 753
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=203.34 Aligned_cols=261 Identities=12% Similarity=0.077 Sum_probs=178.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC--------------CcccCCHHHHHhhCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
||+|||+|.||.+++..|+++||+|++|+|++++++.+.+.+ +...+++.++++++|+||+||| +
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~-~ 95 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP-T 95 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCC-H
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCC-h
Confidence 899999999999999999999999999999999988887643 3445678888889999999995 5
Q ss_pred HHHHHHHhccCc----cccccCC-CcEEEEcCCC-CHHHHHHHHHHHHhc-C---CcEEEcccCCChHhhcccceEEEec
Q 022834 68 AAALSVVFDKGG----VLEQICP-GKGYIDMSTV-DHETSIKISRAITSK-G---GHFLEAPVSGSKQPAETGQLVILSA 137 (291)
Q Consensus 68 ~~~~~v~~~~~~----l~~~l~~-~~~vv~~s~~-~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~g~~~~~~~ 137 (291)
+.+++++ ++ +.+.+++ +++|++++++ .+.+.+.+.+.+.+. + ..++..|..............++.+
T Consensus 96 ~~~~~v~---~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~g~~~~~~~~~ 172 (366)
T 1evy_A 96 QFLRGFF---EKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIAS 172 (366)
T ss_dssp HHHHHHH---HHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEEC
T ss_pred HHHHHHH---HHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHhCCceEEEEec
Confidence 7889998 56 7777777 8999999865 443333344444332 2 2233455332211111222333455
Q ss_pred CCHHHHHHHHHHHHHh--ccceEeeCCCChhHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHcCCCH
Q 022834 138 GEKALYDEAISALNVI--GKKAFFLGEVGNGAKMKLVVN-----------------MIMGCMMNTFSEGLVLAEKSGLDP 198 (291)
Q Consensus 138 g~~~~~~~~~~ll~~~--g~~~~~~~~~~~a~~~k~~~n-----------------~~~~~~~~~~~E~~~~~~~~g~~~ 198 (291)
++.+..+.++++|+.. +.++++.+++....|.|++.| .....+..++.|+..++++.|+++
T Consensus 173 ~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi~~ 252 (366)
T 1evy_A 173 ADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDG 252 (366)
T ss_dssp SSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6788889999999999 888877877666677766544 445566789999999999999998
Q ss_pred HHHHHHHhhc----CCCccccccc--ccccccCC-CC----CCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 022834 199 RTLLDVLDLG----GIANPMFKGK--GPTMLQSN-YA----PAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK 266 (291)
Q Consensus 199 ~~~~~~~~~~----~~~s~~~~~~--~~~~~~~~-~~----~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~ 266 (291)
+++.++...+ ...+++.+++ .+.+..+. +. ..+....+.+|++++++.++++|+++|+++.+++++..
T Consensus 253 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~ 331 (366)
T 1evy_A 253 SAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYK 331 (366)
T ss_dssp TTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHTTCCHHHHHC---CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHS
T ss_pred ccccccccchhheeeecCCCCchHHHHHHHhCCCCHHHHHHHcCCeeehHHHHHHHHHHHHHhCCCCcHHHHHHHHHHC
Confidence 7654321110 0112222111 11221111 00 01223346799999999999999999999999988763
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=182.06 Aligned_cols=245 Identities=14% Similarity=0.208 Sum_probs=182.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+|.||..++..|.+.|++|.+|||++++.+.+.+. |+....+..++++++|+||+|+| +..+++++ .+
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~---~~ 79 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVL---KP 79 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHH---TT
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHH---HH
Confidence 799999999999999999999999999999999999888765 88888889998899999999997 67788888 54
Q ss_pred cccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecC--CHHHHHHHHHHHHHhccc
Q 022834 80 VLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKK 156 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~~g~~ 156 (291)
+. +++++++.+++ .+. .+.+.+. .+..++. ++.+.+.....|...++.++ +++.++.++++|+.+| .
T Consensus 80 l~----~~~~vv~~~~~~~~~---~l~~~~~-~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G-~ 149 (259)
T 2ahr_A 80 LH----FKQPIISMAAGISLQ---RLATFVG-QDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFG-S 149 (259)
T ss_dssp SC----CCSCEEECCTTCCHH---HHHHHHC-TTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTE-E
T ss_pred hc----cCCEEEEeCCCCCHH---HHHHhcC-CCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCC-C
Confidence 42 67899998654 443 3444443 3445665 55566666666655555555 7888999999999999 5
Q ss_pred eEeeCCCChhHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcc-cccccc--cccc-cCCCCCC
Q 022834 157 AFFLGEVGNGAKMKLVV--NMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP-MFKGKG--PTML-QSNYAPA 230 (291)
Q Consensus 157 ~~~~~~~~~a~~~k~~~--n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~-~~~~~~--~~~~-~~~~~~~ 230 (291)
++++++.......++.. |.+...+...+.|+ +.+.|++++.+.+++..+...++ ++.... +.++ ...++|+
T Consensus 150 ~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~p~ 226 (259)
T 2ahr_A 150 TFDISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPG 226 (259)
T ss_dssp EEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHCCTT
T ss_pred EEEecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCC
Confidence 77777766677777643 33434444555555 78899999999999987654444 343332 4444 3446788
Q ss_pred cccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 231 FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 231 ~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
+++..+.+|++ +.|++..+.+++.+.++++.+
T Consensus 227 ~~~~~~~~~l~-------~~g~~~~~~~a~~~~~~r~~~ 258 (259)
T 2ahr_A 227 GTTIAGLMELE-------RLGLTATVSSAIDKTIDKAKS 258 (259)
T ss_dssp SHHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH-------HCChHHHHHHHHHHHHHHHhc
Confidence 88877777774 678888899998888887654
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=191.05 Aligned_cols=253 Identities=14% Similarity=0.136 Sum_probs=178.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCC----CcEEEEcCCcc--hhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLS--KCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g----~~V~~~~r~~~--~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+|.||.+|+..|.++| ++|++|+|+++ +++.+.+.|+.+..++.++++++|+||+||| ++.+++++
T Consensus 23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~vl 101 (322)
T 2izz_A 23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPFIL 101 (322)
T ss_dssp CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHHHH
Confidence 79999999999999999999999 89999999986 7888887798888889899999999999996 68899999
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--CCcEE-EcccCCChHhhcccceEEEecCC---HHHHHHHHH
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHFL-EAPVSGSKQPAETGQLVILSAGE---KALYDEAIS 148 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~g~~~~~~~g~---~~~~~~~~~ 148 (291)
+++.+.++++++||+++++.+. +.+.+.+.+. +..++ ..| ..+.....+. .++++++ ++.++.+++
T Consensus 102 ---~~l~~~l~~~~ivvs~s~gi~~--~~l~~~l~~~~~~~~vv~~~p--~~p~~~~~g~-~v~~~g~~~~~~~~~~v~~ 173 (322)
T 2izz_A 102 ---DEIGADIEDRHIVVSCAAGVTI--SSIEKKLSAFRPAPRVIRCMT--NTPVVVREGA-TVYATGTHAQVEDGRLMEQ 173 (322)
T ss_dssp ---HHHGGGCCTTCEEEECCTTCCH--HHHHHHHHTTSSCCEEEEEEC--CGGGGGTCEE-EEEEECTTCCHHHHHHHHH
T ss_pred ---HHHHhhcCCCCEEEEeCCCCCH--HHHHHHHhhcCCCCeEEEEeC--CcHHHHcCCe-EEEEeCCCCCHHHHHHHHH
Confidence 7788888789999999877553 3455555542 33444 333 2233333343 4555665 788899999
Q ss_pred HHHHhccceEeeCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcc-cccc--cccccc
Q 022834 149 ALNVIGKKAFFLGEVGNGAKMKLV--VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP-MFKG--KGPTML 223 (291)
Q Consensus 149 ll~~~g~~~~~~~~~~~a~~~k~~--~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~-~~~~--~~~~~~ 223 (291)
+|+.+|..+++..+ .......+. .+.+.+.++..+.|+ +.+.|++++.+.+++..+...++ +... ..|.++
T Consensus 174 ll~~~G~~~~~~e~-~~~~~~a~~g~gpa~~~~~~eala~a---~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~~~~p~~l 249 (322)
T 2izz_A 174 LLSSVGFCTEVEED-LIDAVTGLSGSGPAYAFTALDALADG---GVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQL 249 (322)
T ss_dssp HHHTTEEEEECCGG-GHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHhCCCEEEeCHH-HHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 99999987654432 223333332 233433344444444 67899999999998886544333 2221 233333
Q ss_pred cCC-CCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCC
Q 022834 224 QSN-YAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLG 273 (291)
Q Consensus 224 ~~~-~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~ 273 (291)
... ++|++++. ..++.+++.|++.++.+++.+.++++.+.|.+
T Consensus 250 ~~~v~sp~g~t~-------~~l~~l~~~g~~~~~~~av~~~~~ra~e~~~~ 293 (322)
T 2izz_A 250 KDNVSSPGGATI-------HALHVLESGGFRSLLINAVEASCIRTRELQSM 293 (322)
T ss_dssp HHHHCCTTSHHH-------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhCCCCCcHHH-------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 222 35554432 34556778999999999999999998876543
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=192.14 Aligned_cols=258 Identities=14% Similarity=0.059 Sum_probs=180.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-------CcEEEEcCCcc-----hhHHHHHC--------------CCcccCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-------FKVTVWNRTLS-----KCDELVAH--------------GATVGGSPAEVI 54 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-------~~V~~~~r~~~-----~~~~l~~~--------------g~~~~~~~~~~~ 54 (291)
|||+|||+|.||++++..|+++| ++|++|+|+++ +.+.+.+. ++..++++.+++
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~ 101 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI 101 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence 58999999999999999999999 99999999988 88877653 234456778888
Q ss_pred hhCCEEEEecCCHHHHHHHHhccCcccc----ccCCCcEEEEcCCCCHH---HHHHHHHHHHhc---CCcEEEcccCCCh
Q 022834 55 KKCTITIGMLADPAAALSVVFDKGGVLE----QICPGKGYIDMSTVDHE---TSIKISRAITSK---GGHFLEAPVSGSK 124 (291)
Q Consensus 55 ~~~dvvii~vp~~~~~~~v~~~~~~l~~----~l~~~~~vv~~s~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~ 124 (291)
+++|+||+||| ++.+++++ +++.+ .++++++|++++++... +.+.+.+.+.+. ...++..|.....
T Consensus 102 ~~aDvVilav~-~~~~~~vl---~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~ 177 (375)
T 1yj8_A 102 NDADLLIFIVP-CQYLESVL---ASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIAMD 177 (375)
T ss_dssp TTCSEEEECCC-HHHHHHHH---HHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCHHH
T ss_pred cCCCEEEEcCC-HHHHHHHH---HHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchHHH
Confidence 89999999996 58899999 77877 78889999999876321 112233323221 2223344432221
Q ss_pred HhhcccceEEEecCCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHH-----------------HHHHHHHHHHHHH
Q 022834 125 QPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVN-----------------MIMGCMMNTFSEG 187 (291)
Q Consensus 125 ~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n-----------------~~~~~~~~~~~E~ 187 (291)
.........++.+++++..+.++++|+..+.+++..+++....|.|++.| .....+..++.|+
T Consensus 178 v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~ 257 (375)
T 1yj8_A 178 VAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEM 257 (375)
T ss_dssp HHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Confidence 12222223344556888889999999999999888888777778777654 4556678899999
Q ss_pred HHHHHHc--CCCHHHHHHH------HhhcCC-Cccccccccccccc-CC-CC--C------CcccccHHHHHHHHHHHHh
Q 022834 188 LVLAEKS--GLDPRTLLDV------LDLGGI-ANPMFKGKGPTMLQ-SN-YA--P------AFPLKHQQKDMRLALALGD 248 (291)
Q Consensus 188 ~~~~~~~--g~~~~~~~~~------~~~~~~-~s~~~~~~~~~~~~-~~-~~--~------~~~~~~~~~d~~~~~~~a~ 248 (291)
..++++. |++++++.++ +..... .+.. ..+.+.. ++ ++ . .+......++++++++.++
T Consensus 258 ~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~~~~~~---~~~~~~~~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~~~a~ 334 (375)
T 1yj8_A 258 ILFGKVFFQKFNENILLESCGFADIITSFLAGRNAK---CSAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIK 334 (375)
T ss_dssp HHHHHHHSSCCCGGGGGSTTTHHHHHHHHSSSSHHH---HHHHHHHHTTSSCHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCcchhhccccccceeEeeeCCccHH---HHHHHHhcCCCCCHHHHHHhhcCCcEeeHHHHHHHHHHHHH
Confidence 9999999 6988776442 222111 1111 1112222 10 11 0 0234557899999999999
Q ss_pred hcCC--CchHHHHHHHHHH
Q 022834 249 ENAV--SMPIAAAANEAFK 265 (291)
Q Consensus 249 ~~g~--~~p~~~~~~~~~~ 265 (291)
++|+ ++|+++++++++.
T Consensus 335 ~~gv~~~~P~~~~v~~~~~ 353 (375)
T 1yj8_A 335 EKNMTNEFPLFTVLHKISF 353 (375)
T ss_dssp HTTCGGGCHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHh
Confidence 9999 9999999998875
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=192.21 Aligned_cols=268 Identities=14% Similarity=0.067 Sum_probs=184.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcC--CcchhHHHHHCCC-----------cccC--CHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR--TLSKCDELVAHGA-----------TVGG--SPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r--~~~~~~~l~~~g~-----------~~~~--~~~~~~~~~dvvii~vp 65 (291)
|||+|||+|.||..++..|+++||+|++|+| ++++.+.+.+.+. ...+ ++.++++++|+||+|||
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 8999999999999999999999999999999 9999998887764 3344 66777889999999996
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCCC----HHHHHHHHHHHHhc-CC----cEEEcccCCChHhhcccc--eEE
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVD----HETSIKISRAITSK-GG----HFLEAPVSGSKQPAETGQ--LVI 134 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~----~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~g~--~~~ 134 (291)
. ..+++++ +++.+ ++++++|++++++. |...+.+.+.+.+. +. .+...|.. ......+. ..+
T Consensus 81 ~-~~~~~v~---~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~--~~~~~~g~~~~~~ 153 (335)
T 1txg_A 81 T-DGVLPVM---SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAI--AREVAKRMPTTVV 153 (335)
T ss_dssp G-GGHHHHH---HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCC--HHHHHTTCCEEEE
T ss_pred h-HHHHHHH---HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCc--HHHHHccCCcEEE
Confidence 5 5788888 77888 87899999998664 23445566666542 32 12233321 11222233 223
Q ss_pred EecCCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
Q 022834 135 LSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLV----------------------VNMIMGCMMNTFSEGLVLAE 192 (291)
Q Consensus 135 ~~~g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~----------------------~n~~~~~~~~~~~E~~~~~~ 192 (291)
+.+.+++..+.++++|+..|.++++.+++..+.|.|++ .|.....+..++.|+..+++
T Consensus 154 ~~~~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~ 233 (335)
T 1txg_A 154 FSSPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIE 233 (335)
T ss_dssp EECSCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44457888899999999999888888887777786544 45555566788999999999
Q ss_pred HcCCCHHHHH------HHHhhcCCCcccccccccccccCCCCC-------C--c-ccccHHHHHHHHHHHHhhcCCCchH
Q 022834 193 KSGLDPRTLL------DVLDLGGIANPMFKGKGPTMLQSNYAP-------A--F-PLKHQQKDMRLALALGDENAVSMPI 256 (291)
Q Consensus 193 ~~g~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~-------~--~-~~~~~~~d~~~~~~~a~~~g~~~p~ 256 (291)
+.|++++++. +.+..... +... ..... ....++. + + ......+|++++++.++++|+++|+
T Consensus 234 ~~G~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~-~~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~~~gv~~P~ 310 (335)
T 1txg_A 234 ILGGDRETAFGLSGFGDLIATFRG-GRNG-MLGEL-LGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTKL 310 (335)
T ss_dssp HHTSCGGGGGSTTTHHHHHHTTTC-HHHH-HHHHH-HHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHCCCcchhhcccchhheeecccc-CccH-HHHHH-HhCCCCHHHHHHHhccCCceecchHHHHHHHHHHHHHcCCCCcH
Confidence 9999987664 33332211 1000 00000 0111111 0 0 1233469999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcHHHHHHHHH
Q 022834 257 AAAANEAFKKARSLGLGDNDFSAVFEVVK 285 (291)
Q Consensus 257 ~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 285 (291)
++++++++.. ..+...+++.+-
T Consensus 311 ~~~~~~~~~~-------~~~~~~~~~~l~ 332 (335)
T 1txg_A 311 LDSIYRVLYE-------GLKVEEVLFELA 332 (335)
T ss_dssp HHHHHHHHHS-------CCCHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCCHHHHHHHHH
Confidence 9999888763 235555555543
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=190.40 Aligned_cols=256 Identities=11% Similarity=0.020 Sum_probs=177.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-------CcEEEEcCCcc-----hhHHHHHC--------------CCcccCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-------FKVTVWNRTLS-----KCDELVAH--------------GATVGGSPAEVI 54 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-------~~V~~~~r~~~-----~~~~l~~~--------------g~~~~~~~~~~~ 54 (291)
|||+|||+|.||.+++..|+++| |+|++|+|+++ +.+.+.+. ++...+++.+++
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAA 88 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHH
Confidence 58999999999999999999999 99999999988 77777642 123456778888
Q ss_pred hhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCH---HH----HHHHHHHHHhcCCcEEEcccCCChHhh
Q 022834 55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH---ET----SIKISRAITSKGGHFLEAPVSGSKQPA 127 (291)
Q Consensus 55 ~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (291)
+++|+||+|||. +.+++++ +++.+.++++++|++++++.. .+ .+.+.+.+. ....++..|... ...
T Consensus 89 ~~aD~Vilav~~-~~~~~v~---~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v~~gp~~a--~~v 161 (354)
T 1x0v_A 89 EDADILIFVVPH-QFIGKIC---DQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG-IPMSVLMGANIA--SEV 161 (354)
T ss_dssp TTCSEEEECCCG-GGHHHHH---HHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT-CCEEEEECSCCH--HHH
T ss_pred cCCCEEEEeCCH-HHHHHHH---HHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC-CCEEEEECCCcH--HHH
Confidence 899999999965 7889998 778888888999999988642 21 122222222 112233444322 122
Q ss_pred cccc--eEEEecCCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHH-----------------HHHHHHHHHHHHHHH
Q 022834 128 ETGQ--LVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVV-----------------NMIMGCMMNTFSEGL 188 (291)
Q Consensus 128 ~~g~--~~~~~~g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~-----------------n~~~~~~~~~~~E~~ 188 (291)
..+. ...+.+.+.+..+.++++|+..+.++++.+++....|.|++. |.....+..++.|+.
T Consensus 162 ~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~~ 241 (354)
T 1x0v_A 162 ADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMI 241 (354)
T ss_dssp HTTCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 2332 333445578888999999999999888888877778887774 445566788999999
Q ss_pred HHHHHcCC---CHHHHHHH------HhhcCCCcccccccccccccCCCCC--------CcccccHHHHHHHHHHHHhhcC
Q 022834 189 VLAEKSGL---DPRTLLDV------LDLGGIANPMFKGKGPTMLQSNYAP--------AFPLKHQQKDMRLALALGDENA 251 (291)
Q Consensus 189 ~~~~~~g~---~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~a~~~g 251 (291)
.++++.|+ +++++.++ +..... +. .....+.+....++. .+......+|++++++.++++|
T Consensus 242 ~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~g~v~~~a~~~g 319 (354)
T 1x0v_A 242 AFAKLFCSGPVSSATFLESCGVADLITTCYG-GR-NRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKG 319 (354)
T ss_dssp HHHHHHSSSCCCGGGGGSTTTHHHHHHHHHH-CH-HHHHHHHHHHHCCCHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCcccccccchHHHHHHhhcc-cc-cHHHHHHHHhcCCCHHHHHHhhcCCcEeehHHHHHHHHHHHHHhC
Confidence 99999999 88765432 221110 10 000112222101110 1234456899999999999999
Q ss_pred C--CchHHHHHHHHHH
Q 022834 252 V--SMPIAAAANEAFK 265 (291)
Q Consensus 252 ~--~~p~~~~~~~~~~ 265 (291)
+ ++|+++++++++.
T Consensus 320 v~~~~P~~~~v~~~~~ 335 (354)
T 1x0v_A 320 LVDKFPLFMAVYKVCY 335 (354)
T ss_dssp CGGGSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9 9999999998875
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=180.81 Aligned_cols=250 Identities=11% Similarity=0.141 Sum_probs=175.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc-------------ccCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-------------VGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-------------~~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||++++..|+++|++|++| +++++++.+.+.|.. ..++.++ ++++|+||+|||.
T Consensus 20 ~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilavk~- 96 (318)
T 3hwr_A 20 MKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCVKS- 96 (318)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECCCG-
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEccc-
Confidence 79999999999999999999999999999 888999988876532 2345544 5789999999955
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc---CCcEEEcccCCChHhhcccceEEEecCCHHHHH
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK---GGHFLEAPVSGSKQPAETGQLVILSAGEKALYD 144 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 144 (291)
.++++++ +++.+.++++++|+.++++.... +.+.+.+++. ++.+..+...++....+.+...+.++. .+..+
T Consensus 97 ~~~~~~l---~~l~~~l~~~~~iv~~~nGi~~~-~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~~~ig~-~~~~~ 171 (318)
T 3hwr_A 97 TDTQSAA---LAMKPALAKSALVLSLQNGVENA-DTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGELVIEP-TSHGA 171 (318)
T ss_dssp GGHHHHH---HHHTTTSCTTCEEEEECSSSSHH-HHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEECC-CTTTH
T ss_pred ccHHHHH---HHHHHhcCCCCEEEEeCCCCCcH-HHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCceEEEcC-CHHHH
Confidence 6899999 78888888899999998886432 3455555311 111122223333333333333334444 45567
Q ss_pred HHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcCCCH-----
Q 022834 145 EAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSGLDP----- 198 (291)
Q Consensus 145 ~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~---------------------~~~~~E~~~~~~~~g~~~----- 198 (291)
.++++|+..+.++++..++....|.|++.|+..+.. ..++.|+..++++.|++.
T Consensus 172 ~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~ 251 (318)
T 3hwr_A 172 NLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGVKLPDDVA 251 (318)
T ss_dssp HHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTCCCCTTHH
T ss_pred HHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCCCCChHHH
Confidence 899999999999888888889999999999876653 346779999999998763
Q ss_pred HHHHHHHhhc-CCCcccccccc-cccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 199 RTLLDVLDLG-GIANPMFKGKG-PTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 199 ~~~~~~~~~~-~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
+.+.+++... ...++|+++.. .+..+.++. .+++++.|+++|+++|++++++++++....
T Consensus 252 ~~~~~~~~~~~~~~sSM~qD~~~gr~tEid~i-----------~G~vv~~a~~~gv~tP~~~~l~~ll~~~e~ 313 (318)
T 3hwr_A 252 LAIRRIAETMPRQSSSTAQDLARGKRSEIDHL-----------NGLIVRRGDALGIPVPANRVLHALVRLIED 313 (318)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHTTCCCSGGGT-----------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHcCChhHHHHH-----------HHHHHHHHHHhCCCCcHHHHHHHHHHHHHh
Confidence 2333333322 22334443321 111111111 367999999999999999999999986553
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-23 Score=177.43 Aligned_cols=253 Identities=16% Similarity=0.154 Sum_probs=172.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc--------------ccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT--------------VGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~--------------~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|.||++++..|+++|++|++|+|++ .+.+.+.|.. ++++.++ +.++|+||+|| +
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilav-k 78 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGL-K 78 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECC-C
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEec-C
Confidence 689999999999999999999999999999975 4777766532 2244544 57899999999 6
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEEcccCCChHhhcccceEEEecC----
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQPAETGQLVILSAG---- 138 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~g---- 138 (291)
++++++++ +.+.+.+.++++||.++++... .+.+.+.++.. ++.+..+...++......+...+.++.
T Consensus 79 ~~~~~~~l---~~l~~~l~~~~~iv~l~nGi~~-~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~ 154 (312)
T 3hn2_A 79 TFANSRYE---ELIRPLVEEGTQILTLQNGLGN-EEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPR 154 (312)
T ss_dssp GGGGGGHH---HHHGGGCCTTCEEEECCSSSSH-HHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCC
T ss_pred CCCcHHHH---HHHHhhcCCCCEEEEecCCCCc-HHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCC
Confidence 67889999 7888889889999999988632 24455555543 122233333333333333433344432
Q ss_pred CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcC--
Q 022834 139 EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSG-- 195 (291)
Q Consensus 139 ~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~---------------------~~~~~E~~~~~~~~g-- 195 (291)
+.+..+.+.++|+..+.++++..++....|.|++.|+..+.. ..++.|+.+++++.|
T Consensus 155 ~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G~~ 234 (312)
T 3hn2_A 155 DTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGLA 234 (312)
T ss_dssp CSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred ccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcCCc
Confidence 456778999999999999888888999999999999876643 346678888888888
Q ss_pred CCH-----HHHHHHHhhc-CCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 196 LDP-----RTLLDVLDLG-GIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 196 ~~~-----~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
++. +.+.+..... ...++|+++. ..+.. ++ ...=.+++++.|+++|+++|++++++++++....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~sSM~qD~----~~gr~-----tE-id~i~G~vv~~a~~~gv~~P~~~~l~~ll~~~~~ 304 (312)
T 3hn2_A 235 TFIADGYVDDMLEFTDAMGEYKPSMEIDR----EEGRP-----LE-IAAIFRTPLAYGAREGIAMPRVEMLATLLEQATG 304 (312)
T ss_dssp SCCCTTHHHHHHHHHTTSCSCCCHHHHHH----HTTCC-----CC-HHHHTHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHhcCCCCCchHHHHH----HhCCC-----cc-HHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 543 2222322211 1122232211 11100 00 1111378999999999999999999999987665
Q ss_pred CC
Q 022834 270 LG 271 (291)
Q Consensus 270 ~g 271 (291)
.|
T Consensus 305 ~~ 306 (312)
T 3hn2_A 305 EG 306 (312)
T ss_dssp C-
T ss_pred cc
Confidence 54
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-24 Score=183.83 Aligned_cols=254 Identities=15% Similarity=0.151 Sum_probs=176.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-------------cCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------------GGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||+.++..|+++|++|++|+|+ ++.+.+.+.|... .+++++ +.++|+||+|| ++
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilav-k~ 80 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAV-KA 80 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECC-CH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeC-Cc
Confidence 79999999999999999999999999999996 6778888776532 346665 57899999999 55
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCCH------------------HHHHHHHHHHHhcCC----cEEEcccCCChH
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDH------------------ETSIKISRAITSKGG----HFLEAPVSGSKQ 125 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 125 (291)
.++++++ +++.+.++++++|+.++++.+ ...+.+.+.++...+ .+..+...++..
T Consensus 81 ~~~~~~~---~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~pg~ 157 (335)
T 3ghy_A 81 PALESVA---AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVSPGH 157 (335)
T ss_dssp HHHHHHH---GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESSTTE
T ss_pred hhHHHHH---HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcCCcE
Confidence 7899999 888888989999999999842 122345555543311 111122222222
Q ss_pred hhcccceEEEec----CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHH---------------------HH
Q 022834 126 PAETGQLVILSA----GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG---------------------CM 180 (291)
Q Consensus 126 ~~~~g~~~~~~~----g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~---------------------~~ 180 (291)
..+.+...+.++ .+.+..+.+.++|+..+.+++...++....|.|++.|+..+ .+
T Consensus 158 v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~~~l~ 237 (335)
T 3ghy_A 158 IRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLVSAFC 237 (335)
T ss_dssp EEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHHHHHH
T ss_pred EEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHHHHHH
Confidence 222333334443 24566789999999999998888889999999998776544 34
Q ss_pred HHHHHHHHHHHHHcCCCH----HHHHHHHhhc-CCCcccccccccccccCCCCCCc-ccccHHHHHHHHHHHHhhcCCCc
Q 022834 181 MNTFSEGLVLAEKSGLDP----RTLLDVLDLG-GIANPMFKGKGPTMLQSNYAPAF-PLKHQQKDMRLALALGDENAVSM 254 (291)
Q Consensus 181 ~~~~~E~~~~~~~~g~~~----~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~a~~~g~~~ 254 (291)
..++.|+.+++++.|+++ +...+.+... ...++|+++ +..|. .++ ...=.+++++.|+++|+++
T Consensus 238 ~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~sSM~qD---------~~~gr~~tE-id~i~G~vv~~a~~~gv~~ 307 (335)
T 3ghy_A 238 LAVMAEAKAIGARIGCPIEQSGEARSAVTRQLGAFKTSMLQD---------AEAGRGPLE-IDALVASVREIGLHVGVPT 307 (335)
T ss_dssp HHHHHHHHHHHHTTTCCCCSCHHHHHHHHHTTCSCCCTTTC--------------CCCCC-HHHHTHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCCCCccHHHHHHHHhccCCCCcHHHHH---------HHcCCCCch-HHHHhhHHHHHHHHhCCCC
Confidence 568889999999999754 3444444432 233444432 22222 222 2233478999999999999
Q ss_pred hHHHHHHHHHHHHHHC
Q 022834 255 PIAAAANEAFKKARSL 270 (291)
Q Consensus 255 p~~~~~~~~~~~~~~~ 270 (291)
|++++++++++.....
T Consensus 308 P~~~~l~~li~~~e~~ 323 (335)
T 3ghy_A 308 PQIDTLLGLVRLHAQT 323 (335)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999876543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-23 Score=178.33 Aligned_cols=250 Identities=15% Similarity=0.110 Sum_probs=170.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCC---------------cccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA---------------TVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~---------------~~~~~~~~~~~~~dvvii~vp 65 (291)
|||+|||+|.||+.++..|+++|++|++|+|++ .+.+.+.|+ ..+.+++++.+++|+||+|||
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK 80 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK 80 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence 799999999999999999999999999999976 366665442 223566666568999999995
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC------ChHhhcccceEEEec--
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG------SKQPAETGQLVILSA-- 137 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~~-- 137 (291)
. .++++++ +.+.+.+.++++||.++++... .+.+.+.++.. .++.++.+. +......+...+.++
T Consensus 81 ~-~~~~~~l---~~l~~~l~~~t~Iv~~~nGi~~-~~~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~ 153 (320)
T 3i83_A 81 V-VEGADRV---GLLRDAVAPDTGIVLISNGIDI-EPEVAAAFPDN--EVISGLAFIGVTRTAPGEIWHQAYGRLMLGNY 153 (320)
T ss_dssp C-CTTCCHH---HHHTTSCCTTCEEEEECSSSSC-SHHHHHHSTTS--CEEEEEEEEEEEEEETTEEEEEEEEEEEEEES
T ss_pred C-CChHHHH---HHHHhhcCCCCEEEEeCCCCCh-HHHHHHHCCCC--cEEEEEEEeceEEcCCCEEEECCCCEEEEecC
Confidence 5 6788888 7888888888999998887531 14455555443 234333221 112222233334443
Q ss_pred --CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHcC
Q 022834 138 --GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM--------------------MNTFSEGLVLAEKSG 195 (291)
Q Consensus 138 --g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~--------------------~~~~~E~~~~~~~~g 195 (291)
.+.+..+.+.++|+..+.++++..++....|.|++.|+..+.+ ..++.|+.+++++.|
T Consensus 154 ~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~va~a~G 233 (320)
T 3i83_A 154 PGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRAVAAANG 233 (320)
T ss_dssp SSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHHHHHHcC
Confidence 3456778999999999999988888999999999999765543 346778888888888
Q ss_pred CCHH-----HHHHHHhhc-CCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 196 LDPR-----TLLDVLDLG-GIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 196 ~~~~-----~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
++.+ .+.++.... ...++|+++.. .+.. ++ ...=.+++++.|+++|+++|++++++++++....
T Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~sSM~qD~~----~gr~-----tE-id~i~G~vv~~a~~~gv~~P~~~~l~~~l~~~e~ 303 (320)
T 3i83_A 234 HPLPEDIVEKNVASTYKMPPYKTSMLVDFE----AGQP-----ME-TEVILGNAVRAGRRTRVAIPHLESVYALMKLLEL 303 (320)
T ss_dssp CCCCTTHHHHHHHHHHHSCCCCCHHHHHHH----HTCC-----CC-HHHHTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhcCCCCCCcHHHHHH----hCCC-----ch-HHHHccHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 7642 233332221 12222332211 0000 00 1111378999999999999999999999987654
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=180.68 Aligned_cols=176 Identities=17% Similarity=0.269 Sum_probs=138.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch--------------hHHHHHC-CCcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--------------CDELVAH-GATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~--------------~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp 65 (291)
|||+|||+|.||.+|+..|+++||+|++|+|++++ .+.+.+. +.....++.++++++|+||+|||
T Consensus 20 ~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVilavp 99 (245)
T 3dtt_A 20 MKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNATE 99 (245)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEEEccC
Confidence 69999999999999999999999999999999887 4555443 55566788899999999999997
Q ss_pred CHHHHHHHHhccCcc-ccccCCCcEEEEcCCC-----------CHH----HHHHHHHHHHh----cCCcEEEcccCCChH
Q 022834 66 DPAAALSVVFDKGGV-LEQICPGKGYIDMSTV-----------DHE----TSIKISRAITS----KGGHFLEAPVSGSKQ 125 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l-~~~l~~~~~vv~~s~~-----------~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~ 125 (291)
. ..+.+++ .++ .+.+ ++++||++++. .|. ..+.+.+.++. +++.++++|+.+++.
T Consensus 100 ~-~~~~~~~---~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v~~~~~ 174 (245)
T 3dtt_A 100 G-ASSIAAL---TAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDPG 174 (245)
T ss_dssp G-GGHHHHH---HHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHHHHCGG
T ss_pred c-HHHHHHH---HHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHHhcCcc
Confidence 6 4555666 455 5556 88999999943 222 23444444332 267788899988887
Q ss_pred hhcccceEEEecC-CHHHHHHHHHHHHHhccc-eEeeCCCChhHHHHHHHHHHHHHHH
Q 022834 126 PAETGQLVILSAG-EKALYDEAISALNVIGKK-AFFLGEVGNGAKMKLVVNMIMGCMM 181 (291)
Q Consensus 126 ~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~~-~~~~~~~~~a~~~k~~~n~~~~~~~ 181 (291)
.+..++..++++| +++.++.++++|+.+|++ ++++|+.+.+..+|+++|++.....
T Consensus 175 ~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l~~ 232 (245)
T 3dtt_A 175 RAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLWG 232 (245)
T ss_dssp GTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHHHH
T ss_pred ccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHHHH
Confidence 7777777677655 689999999999999975 5889999999999999998866653
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=175.88 Aligned_cols=249 Identities=18% Similarity=0.180 Sum_probs=177.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC---cEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~---~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||.+|+..|.++|+ +|++|||++++++.+.+. |+....+..++++++|+||+|| +++.+++++
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav-~p~~~~~vl-- 80 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAV-KPHQIKMVC-- 80 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECS-CGGGHHHHH--
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEe-CHHHHHHHH--
Confidence 689999999999999999999999 999999999999999886 8888889999999999999999 568899999
Q ss_pred cCccccc-cCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEE-EecC---CHHHHHHHHHHH
Q 022834 77 KGGVLEQ-ICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVI-LSAG---EKALYDEAISAL 150 (291)
Q Consensus 77 ~~~l~~~-l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~g---~~~~~~~~~~ll 150 (291)
+++.+. ++++++|++++++.+ .+.+.+.+.. +..++ .+| +.+...+.... ++.+ +++..+.+.++|
T Consensus 81 -~~l~~~~l~~~~iiiS~~agi~--~~~l~~~l~~-~~~vvr~mP----n~p~~v~~g~~~l~~~~~~~~~~~~~v~~l~ 152 (280)
T 3tri_A 81 -EELKDILSETKILVISLAVGVT--TPLIEKWLGK-ASRIVRAMP----NTPSSVRAGATGLFANETVDKDQKNLAESIM 152 (280)
T ss_dssp -HHHHHHHHTTTCEEEECCTTCC--HHHHHHHHTC-CSSEEEEEC----CGGGGGTCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred -HHHHhhccCCCeEEEEecCCCC--HHHHHHHcCC-CCeEEEEec----CChHHhcCccEEEEeCCCCCHHHHHHHHHHH
Confidence 788887 777779998776654 3456665543 33444 555 33343444333 4443 678899999999
Q ss_pred HHhccceEeeCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcc-cccc--ccc-cccc
Q 022834 151 NVIGKKAFFLGEV--GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP-MFKG--KGP-TMLQ 224 (291)
Q Consensus 151 ~~~g~~~~~~~~~--~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~-~~~~--~~~-~~~~ 224 (291)
+.+|..++..++. .....+.-..+.+.+.++..+.|+ +.+.|+++++.++++..+...+. +... ..| .+.+
T Consensus 153 ~~iG~~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~~l~~ 229 (280)
T 3tri_A 153 RAVGLVIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQ 229 (280)
T ss_dssp GGGEEEEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHCCCeEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 9999854433332 222222223355555566666666 67899999999998886532222 2211 122 2333
Q ss_pred CCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 225 SNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 225 ~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
...+||.++. ..++..++.|++..+.+++.+..+++.+.
T Consensus 230 ~v~spgGtT~-------~~l~~le~~g~~~~~~~av~aa~~r~~el 268 (280)
T 3tri_A 230 FVTSPGGTTE-------QAIKVLESGNLRELFIKALTAAVNRAKEL 268 (280)
T ss_dssp HHCCTTSHHH-------HHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCChHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHH
Confidence 3456665443 35666689999999999999999988764
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=165.44 Aligned_cols=224 Identities=13% Similarity=0.148 Sum_probs=143.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC----cEEEEcCCcchhHHHHH-CCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|.||.+++..|.++|+ +|++|||++++++.+.+ .|+....++.++++++|+||+|| +++.+++++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav-~~~~~~~v~- 80 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSI-KPDLYASII- 80 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECS-CTTTHHHHC-
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEe-CHHHHHHHH-
Confidence 689999999999999999999998 99999999999998875 48888889999999999999999 567899999
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEe--cCCHHHHHHHHHHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILS--AGEKALYDEAISALNV 152 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~--~g~~~~~~~~~~ll~~ 152 (291)
+++.+.++++++||+.+++.+. +.+.+.+.. +..++ .+| ..|.....|...+.. .++++.++.++++|+.
T Consensus 81 --~~l~~~l~~~~~vvs~~~gi~~--~~l~~~~~~-~~~~v~~~p--~~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~ 153 (247)
T 3gt0_A 81 --NEIKEIIKNDAIIVTIAAGKSI--ESTENAFNK-KVKVVRVMP--NTPALVGEGMSALCPNEMVTEKDLEDVLNIFNS 153 (247)
T ss_dssp -----CCSSCTTCEEEECSCCSCH--HHHHHHHCS-CCEEEEEEC--CGGGGGTCEEEEEEECTTCCHHHHHHHHHHHGG
T ss_pred --HHHHhhcCCCCEEEEecCCCCH--HHHHHHhCC-CCcEEEEeC--ChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence 8888888889998876665442 344444432 33444 334 223333333333333 2588899999999999
Q ss_pred hccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHhhcCCCcccc-c--cccc-ccccCCC
Q 022834 153 IGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVL-AEKSGLDPRTLLDVLDLGGIANPMF-K--GKGP-TMLQSNY 227 (291)
Q Consensus 153 ~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~-~~~~g~~~~~~~~~~~~~~~~s~~~-~--~~~~-~~~~~~~ 227 (291)
+|. ++++++........+..... .....+.|++.. +.+.|++++..++++..+...++.+ . ...+ .+.+...
T Consensus 154 ~G~-~~~~~e~~~d~~~a~~g~gp--a~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~~~~~~~~p~~l~~~v~ 230 (247)
T 3gt0_A 154 FGQ-TEIVSEKLMDVVTSVSGSSP--AYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLETGIHPGELKDMVC 230 (247)
T ss_dssp GEE-EEECCGGGHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred CCC-EEEeCHHHccHHHHHhccHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcC
Confidence 998 55555433333333332211 234455565555 8899999999999998765444432 1 1223 4444556
Q ss_pred CCCcccccH
Q 022834 228 APAFPLKHQ 236 (291)
Q Consensus 228 ~~~~~~~~~ 236 (291)
+||.+....
T Consensus 231 spgG~t~~g 239 (247)
T 3gt0_A 231 SPGGTTIEA 239 (247)
T ss_dssp ---------
T ss_pred CCCchHHHH
Confidence 776655443
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-23 Score=174.33 Aligned_cols=198 Identities=16% Similarity=0.160 Sum_probs=151.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCc-EEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+|||+|.||..++..|.+.|++ |.+|||++++++.+.+. |+....+++++++++|+||+|+|.+ .+++++ +
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~---~ 86 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELL---Q 86 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHH---H
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHH---H
Confidence 7899999999999999999999999 89999999999888776 8888888888888999999999665 668888 6
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEe-cCCHHHHHHHHHHHHHhccce
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS-AGEKALYDEAISALNVIGKKA 157 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~g~~~~~~~~~~ll~~~g~~~ 157 (291)
++.+.++++++|++++++.+.. .+.+.+...+..+..+|+.+.+... .+...+++ +++++.++.++++|+.+|.++
T Consensus 87 ~l~~~~~~~~ivv~~s~~~~~~--~l~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~g~~~ 163 (266)
T 3d1l_A 87 GIVEGKREEALMVHTAGSIPMN--VWEGHVPHYGVFYPMQTFSKQREVD-FKEIPFFIEASSTEDAAFLKAIASTLSNRV 163 (266)
T ss_dssp HHHTTCCTTCEEEECCTTSCGG--GSTTTCSSEEEEEECCCC---CCCC-CTTCCEEEEESSHHHHHHHHHHHHTTCSCE
T ss_pred HHHhhcCCCcEEEECCCCCchH--HHHHHHHhccCcCCceecCCCchhh-cCCCeEEEecCCHHHHHHHHHHHHhcCCcE
Confidence 7777787899999999987643 2333333323344566665543322 23333444 778899999999999999999
Q ss_pred EeeCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022834 158 FFLGEVG---NGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG 209 (291)
Q Consensus 158 ~~~~~~~---~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~ 209 (291)
+++++.+ ...+.|+++|.. .....++|+ ++++.|++++.+.+++..+.
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ea--l~~~~Gl~~~~~~~l~~~~~ 214 (266)
T 3d1l_A 164 YDADSEQRKSLHLAAVFTCNFT--NHMYALAAE--LLKKYNLPFDVMLPLIDETA 214 (266)
T ss_dssp EECCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHTTCCGGGGHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHcCCCHHHHHHHHHHHH
Confidence 9888654 567889998874 334555665 67899999999988887653
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-23 Score=174.26 Aligned_cols=186 Identities=16% Similarity=0.174 Sum_probs=143.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-------CCcccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------GATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
+||+|||+|.||..||..|+ +||+|++||+++++++.+.+. +++..+++++ +++||+||.|+|.+.+++..
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~~ 90 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKVE 90 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHHH
T ss_pred CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHHH
Confidence 58999999999999999999 999999999999999988776 6777778876 78999999999999999888
Q ss_pred HhccCccccccCCCcEEE-EcCCCCHHHHHHHHH-HHHhcCCcEEEcccCCChHhhcccceEEEecC---CHHHHHHHHH
Q 022834 74 VFDKGGVLEQICPGKGYI-DMSTVDHETSIKISR-AITSKGGHFLEAPVSGSKQPAETGQLVILSAG---EKALYDEAIS 148 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv-~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~~~~~~~ 148 (291)
+|. ++.+. ++++++ ++|+..+........ .....|.+|++ |+ ..+++..++.+ +++.++.+.+
T Consensus 91 l~~--~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~-Pv-------~~~~lveiv~g~~t~~~~~~~~~~ 158 (293)
T 1zej_A 91 VLR--EVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMN-PP-------HVMPLVEIVISRFTDSKTVAFVEG 158 (293)
T ss_dssp HHH--HHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECS-ST-------TTCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHH--HHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecC-cc-------ccCCEEEEECCCCCCHHHHHHHHH
Confidence 873 45444 888885 567777754332211 11112445554 32 23445555554 8999999999
Q ss_pred HHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 022834 149 ALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 211 (291)
Q Consensus 149 ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~ 211 (291)
+++.+|+.++++++. +++++++ ...++|++.++++ |++++++.+++..+.+.
T Consensus 159 l~~~lGk~~v~v~d~------fi~Nrll----~~~~~EA~~l~~~-Gv~~e~id~~~~~g~g~ 210 (293)
T 1zej_A 159 FLRELGKEVVVCKGQ------SLVNRFN----AAVLSEASRMIEE-GVRAEDVDRVWKHHLGL 210 (293)
T ss_dssp HHHHTTCEEEEEESS------CHHHHHH----HHHHHHHHHHHHH-TCCHHHHHHHHHTTHHH
T ss_pred HHHHcCCeEEEeccc------ccHHHHH----HHHHHHHHHHHHh-CCCHHHHHHHHHhcCCC
Confidence 999999999999864 6666654 3679999999999 88999999999865443
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=167.82 Aligned_cols=241 Identities=16% Similarity=0.215 Sum_probs=161.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCC----CcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||.+++..|.++| ++|++|||++++ .|+....++.++++++|+||+|+| +..+++++
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~-- 75 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVL-- 75 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHH--
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHH--
Confidence 68999999999999999999999 799999999877 477888888898899999999997 57889998
Q ss_pred cCccccccCCCcEEEEcCC-CCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEecC---CHHHHHHHHHHHH
Q 022834 77 KGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAG---EKALYDEAISALN 151 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g---~~~~~~~~~~ll~ 151 (291)
+++.+.+ ++++|+..++ ..+. .+.+.+.. +..++ ..| +.+.....| ..+++++ +++.++.++++|+
T Consensus 76 -~~l~~~l-~~~~vv~~~~gi~~~---~l~~~~~~-~~~~v~~~p--~~p~~~~~g-~~~~~~~~~~~~~~~~~~~~ll~ 146 (262)
T 2rcy_A 76 -NNIKPYL-SSKLLISICGGLNIG---KLEEMVGS-ENKIVWVMP--NTPCLVGEG-SFIYCSNKNVNSTDKKYVNDIFN 146 (262)
T ss_dssp -HHSGGGC-TTCEEEECCSSCCHH---HHHHHHCT-TSEEEEEEC--CGGGGGTCE-EEEEEECTTCCHHHHHHHHHHHH
T ss_pred -HHHHHhc-CCCEEEEECCCCCHH---HHHHHhCC-CCcEEEECC--ChHHHHcCC-eEEEEeCCCCCHHHHHHHHHHHH
Confidence 6777777 5665555544 4553 34444433 21222 111 223333345 4445555 6888899999999
Q ss_pred HhccceEeeCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcc-ccc--ccccccccCC
Q 022834 152 VIGKKAFFLGEVGNGAKMKLV--VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP-MFK--GKGPTMLQSN 226 (291)
Q Consensus 152 ~~g~~~~~~~~~~~a~~~k~~--~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~-~~~--~~~~~~~~~~ 226 (291)
.+|. ++++++.......++. .|.+...+...+.|+ +.+.|++++.+.+++..+...+. +.. ...+.++...
T Consensus 147 ~~G~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 222 (262)
T 2rcy_A 147 SCGI-IHEIKEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDN 222 (262)
T ss_dssp TSEE-EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred hCCC-EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 9997 7777764444444443 344443444444444 78899999988888875422222 111 2233444443
Q ss_pred C-CCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 227 Y-APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 227 ~-~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
+ +++++.. ..++..++.+++.++.+++.+.++++.+.
T Consensus 223 ~~~~~~t~~-------~~l~~l~~~~~~~~~~~a~~~~~~r~~~~ 260 (262)
T 2rcy_A 223 IVSPGGITA-------VGLYSLEKNSFKYTVMNAVEAACEKSKAM 260 (262)
T ss_dssp HCCTTSHHH-------HHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHh
Confidence 3 3444433 23344456688999999999999888764
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=169.42 Aligned_cols=199 Identities=14% Similarity=0.160 Sum_probs=157.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+ |.||..++..|.++|++|++|+|++++.+.+.+.|+... +..+.++++|+||+|+|. ..+++++ ++
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~-~~~~~v~---~~ 86 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPD-NIIEKVA---ED 86 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCH-HHHHHHH---HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCc-hHHHHHH---HH
Confidence 59999999 999999999999999999999999999988887776654 666778899999999965 5588898 77
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCCh------Hhhcccc-------eEE--EecCCHHHH
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSK------QPAETGQ-------LVI--LSAGEKALY 143 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~g~-------~~~--~~~g~~~~~ 143 (291)
+.+.++++++|+++|++.+. ..+.+ . ..+..|+ .+|..+.. .....|. ..+ ..+++++..
T Consensus 87 l~~~l~~~~ivv~~s~~~~~--~~l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~ 162 (286)
T 3c24_A 87 IVPRVRPGTIVLILDAAAPY--AGVMP-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHY 162 (286)
T ss_dssp HGGGSCTTCEEEESCSHHHH--HTCSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHHH
T ss_pred HHHhCCCCCEEEECCCCchh--HHHHh-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHHH
Confidence 88888889999998887643 22322 2 2256788 99988876 4344552 223 245688899
Q ss_pred HHHHHHHHHhcc---ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHhhc
Q 022834 144 DEAISALNVIGK---KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPRTLLDVLDLG 208 (291)
Q Consensus 144 ~~~~~ll~~~g~---~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~-~~g~~~~~~~~~~~~~ 208 (291)
+.++++|+.+|. +++++++.+.+.+.|.+.|.....++..+.|++..+. +.|++++.+.+++..+
T Consensus 163 ~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~ 231 (286)
T 3c24_A 163 AIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGH 231 (286)
T ss_dssp HHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999998 7888876666666688888777788888888775544 4599999999988754
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-22 Score=170.61 Aligned_cols=247 Identities=13% Similarity=0.103 Sum_probs=165.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCC---cccCCHHHHH-hhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA---TVGGSPAEVI-KKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~---~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||++++..|+++|++|++|+|+++.++.....|. .+..+..+.+ +++|+||+|| +++++++++
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilav-k~~~~~~~l-- 79 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAV-KTHQLDAVI-- 79 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECS-CGGGHHHHG--
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeC-CccCHHHHH--
Confidence 79999999999999999999999999999999776543222232 1222334443 7899999999 668899999
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHH
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNV 152 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~ 152 (291)
+++.+.+.++++||.++++...... ++.. ++.++.+-..++.. ...+...+. .++.+..+.+.++|+.
T Consensus 80 -~~l~~~l~~~~~iv~~~nGi~~~~~-----~~~~~v~~g~~~~~a~~~~pg~-v~~~~~~~~-~~~~~~~~~l~~~l~~ 151 (294)
T 3g17_A 80 -PHLTYLAHEDTLIILAQNGYGQLEH-----IPFKNVCQAVVYISGQKKGDVV-THFRDYQLR-IQDNALTRQFRDLVQD 151 (294)
T ss_dssp -GGHHHHEEEEEEEEECCSSCCCGGG-----CCCSCEEECEEEEEEEEETTEE-EEEEEEEEE-EECSHHHHHHHHHTTT
T ss_pred -HHHHHhhCCCCEEEEeccCcccHhh-----CCCCcEEEEEEEEEEEEcCCCE-EEECCCEEe-cCccHHHHHHHHHHHh
Confidence 8888888788899999988532211 2222 22222222222221 122222222 2456667889999999
Q ss_pred hccceEeeCCCChhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCCCH--HHHHHHHhh---
Q 022834 153 IGKKAFFLGEVGNGAKMKLVVNMIMGC--------------------MMNTFSEGLVLAEKSGLDP--RTLLDVLDL--- 207 (291)
Q Consensus 153 ~g~~~~~~~~~~~a~~~k~~~n~~~~~--------------------~~~~~~E~~~~~~~~g~~~--~~~~~~~~~--- 207 (291)
.+.++++..++....|.|++.|+..+. +..++.|+.+++++.|++. +.+.+.+..
T Consensus 152 ~~~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~ 231 (294)
T 3g17_A 152 SQIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMTIYQG 231 (294)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred CCCceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Confidence 999989898899999999999986551 2346779999999999753 333333321
Q ss_pred -c-CCCcccccccc-cccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 208 -G-GIANPMFKGKG-PTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 208 -~-~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
. ...++|+++.. .+..+-++. .+++++.|+++|+++|++++++++++...+
T Consensus 232 ~~~~~~sSM~qD~~~gr~tEid~i-----------~G~vv~~a~~~gv~~P~~~~l~~ll~~~e~ 285 (294)
T 3g17_A 232 YPDEMGTSMYYDIVHQQPLEVEAI-----------QGFIYRRAREHNLDTPYLDTIYSFLRAYQQ 285 (294)
T ss_dssp SCTTCCCHHHHHHHTTCCCSGGGT-----------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHcCCCccHHHh-----------hhHHHHHHHHhCCCCChHHHHHHHHHHHHh
Confidence 1 11233333221 111111111 368999999999999999999999987654
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-20 Score=164.66 Aligned_cols=248 Identities=15% Similarity=0.146 Sum_probs=161.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CC--------------cccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GA--------------TVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~--------------~~~~~~~~~~~~~dvvii~vp 65 (291)
|||+|||+|.||..++..|+++|++|++|+|++++++.+.+. +. ...++++++++++|+||+|+|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 84 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 84 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence 699999999999999999999999999999999999888765 32 245678888889999999996
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC---CcEEE---cccCCC---hHhhc----ccce
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG---GHFLE---APVSGS---KQPAE----TGQL 132 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~---~~~~~----~g~~ 132 (291)
. ...++++ +++.+.++++++|+++.+..+... ++.+.+.+.+ +.|++ .|+.+. +.... .+..
T Consensus 85 ~-~~~~~~~---~~l~~~l~~~~~vv~~~~~~~~~~-~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~~ 159 (359)
T 1bg6_A 85 A-IHHASIA---ANIASYISEGQLIILNPGATGGAL-EFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAM 159 (359)
T ss_dssp G-GGHHHHH---HHHGGGCCTTCEEEESSCCSSHHH-HHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSCE
T ss_pred c-hHHHHHH---HHHHHhCCCCCEEEEcCCCchHHH-HHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecce
Confidence 6 4568888 778888888998888855343332 2444455443 33544 443332 11111 0122
Q ss_pred EEEe---cCCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHH--------------------------------HHH
Q 022834 133 VILS---AGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVN--------------------------------MIM 177 (291)
Q Consensus 133 ~~~~---~g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n--------------------------------~~~ 177 (291)
.+-. +++++..+.++++|..+. +..+ .|.|++.| ...
T Consensus 160 ~~g~~~~~~~~~~~~~l~~~~~~~~----~~~d----i~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 231 (359)
T 1bg6_A 160 DFACLPAAKAGWALEQIGSVLPQYV----AVEN----VLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVG 231 (359)
T ss_dssp EEEEESGGGHHHHHHHHTTTCTTEE----ECSC----HHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHH
T ss_pred EEEeccccccHHHHHHHHHHhhhcE----EcCC----hHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHH
Confidence 1111 223445566666664431 1121 24444421 123
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC-----------CcccccccccccccCCCCCCcccc--cHHHHH----
Q 022834 178 GCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI-----------ANPMFKGKGPTMLQSNYAPAFPLK--HQQKDM---- 240 (291)
Q Consensus 178 ~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~-----------~s~~~~~~~~~~~~~~~~~~~~~~--~~~~d~---- 240 (291)
..+..++.|+..++++.|++++.+.+.+..... .+++++.. ..| ..++ .+.+|+
T Consensus 232 ~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~d~--------~~~-~e~~~~~~~~D~~~~~ 302 (359)
T 1bg6_A 232 SLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGI--------AGP-INLNTRYFFEDVSTGL 302 (359)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTC--------BCC-SSSCCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHhcchhhcCC--------CCC-CCCCccceecCcCccH
Confidence 445678899999999999998777776654321 12232211 111 1234 578887
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 241 RLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 241 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
+++++.|+++|+++|++++++++++....+
T Consensus 303 g~~~~~a~~~gv~~P~~~~l~~~~~~~~~~ 332 (359)
T 1bg6_A 303 VPLSELGRAVNVPTPLIDAVLDLISSLIDT 332 (359)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHCC
Confidence 789999999999999999999999876543
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-22 Score=172.78 Aligned_cols=242 Identities=11% Similarity=0.022 Sum_probs=155.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCC----------HHHHHhhCCEEEEecCCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGS----------PAEVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~----------~~~~~~~~dvvii~vp~~~~~ 70 (291)
|||+|||+|.||+.++..|+ +|++|++|+|++++.+.+.+.|.....+ ..+...++|+||+|| +++++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilav-K~~~~ 80 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTV-KQHQL 80 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECC-CGGGH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEe-CHHHH
Confidence 79999999999999999999 9999999999998888888777554311 123456799999999 66889
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEEcccCCChHhhcccceEEEec---CCHHHH
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQPAETGQLVILSA---GEKALY 143 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~---g~~~~~ 143 (291)
++++ +.+.+. .+++ ||.+.++.... +.+.+.++.. ++.++.+...++......+...+.+| +..+.+
T Consensus 81 ~~~l---~~l~~~-~~~~-ivs~~nGi~~~-e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~ 154 (307)
T 3ego_A 81 QSVF---SSLERI-GKTN-ILFLQNGMGHI-HDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDDAEPDR 154 (307)
T ss_dssp HHHH---HHTTSS-CCCE-EEECCSSSHHH-HHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCCEEEEECTTCCGGG
T ss_pred HHHH---HHhhcC-CCCe-EEEecCCccHH-HHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCCCcHHH
Confidence 9998 667654 4566 88888886532 3343333322 11111122222221112222223333 223445
Q ss_pred HHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHcCCCHHHHH
Q 022834 144 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMN---------------------TFSEGLVLAEKSGLDPRTLL 202 (291)
Q Consensus 144 ~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~---------------------~~~E~~~~~~~~g~~~~~~~ 202 (291)
+.+.+.|+..|.++.+..++....|.|++.|+..+...+ ++.|+..++.+. +++.+.
T Consensus 155 ~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~--~~~~~~ 232 (307)
T 3ego_A 155 LNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKLE--NEEKAW 232 (307)
T ss_dssp GTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCS--CHHHHH
T ss_pred HHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhcc--ChHHHH
Confidence 566666777788888888899999999999998776544 444555555432 222222
Q ss_pred HHHhhcCCCcccccccccccccCCCCCCcccccHHHH------------HHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 203 DVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD------------MRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 203 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d------------~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
+-+... .. .......+|++| .+++++.|+++|+++|++++++++++...+
T Consensus 233 ~~~~~~--------------~~---~~~~~~sSM~qD~~~gr~tEid~i~G~vv~~a~~~gv~tP~~~~l~~li~~~e~ 294 (307)
T 3ego_A 233 ERVQAV--------------CG---QTKENRSSMLVDVIGGRQTEADAIIGYLLKEASLQGLDAVHLEFLYGSIKALER 294 (307)
T ss_dssp HHHHHH--------------HH---HTTTCCCHHHHHHHHTCCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTC-
T ss_pred HHHHHH--------------HH---hcCCCCchHHHHHHcCCcccHHHhhhHHHHHHHHcCCCCcHHHHHHHHHHHHHh
Confidence 211100 00 001113345555 378999999999999999999999986544
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=161.72 Aligned_cols=177 Identities=15% Similarity=0.169 Sum_probs=144.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHCCC--cccCCHHH-HHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGA--TVGGSPAE-VIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~--~~~~~~~~-~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|.||.+++..|.++|+ +|++|||++++++.+.+.|. ....++++ ++++||+||+|||. ..+.+++
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl- 111 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA- 111 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCG-GGHHHHH-
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCH-HHHHHHH-
Confidence 589999999999999999999999 99999999999998888887 45677888 88999999999966 5678888
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCCh----Hhhc----ccceEEEec---CCHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSK----QPAE----TGQLVILSA---GEKALY 143 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~----~g~~~~~~~---g~~~~~ 143 (291)
+++.+.++++++|+|++++.+...+.+.+.++. .|+ .+|+.|.. ..+. .+...+++. ++++.+
T Consensus 112 --~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~ 186 (314)
T 3ggo_A 112 --KKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRL 186 (314)
T ss_dssp --HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHHH
T ss_pred --HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHHH
Confidence 788888889999999999887777778776654 688 58888753 2222 466666664 478899
Q ss_pred HHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHH
Q 022834 144 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTF 184 (291)
Q Consensus 144 ~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~ 184 (291)
+.++++|+.+|.+++++++......+++++.+......++.
T Consensus 187 ~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~~l~ 227 (314)
T 3ggo_A 187 KLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALV 227 (314)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888888876654444433
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=158.72 Aligned_cols=193 Identities=15% Similarity=0.240 Sum_probs=145.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc--ccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT--VGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+|||+|.||.+++..|.+.|++|++|+|++++.+.+.+.|.. ...++.++ +++|+||+|+| ++.+.+++ +
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~-~~~~~~~~---~ 75 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTP-IQLILPTL---E 75 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSC-HHHHHHHH---H
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECC-HHHHHHHH---H
Confidence 899999999999999999999999999999999999888877763 45677787 89999999995 56788888 7
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE-cccCCC----hHhh----cccceEEEec---CCHHHHHHH
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSGS----KQPA----ETGQLVILSA---GEKALYDEA 146 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~----~~g~~~~~~~---g~~~~~~~~ 146 (291)
++.+.++++++|+++++..+...+.+.+.+. .++. .|+.|. +... ..+..+.++. ++++..+.+
T Consensus 76 ~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~----~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v 151 (279)
T 2f1k_A 76 KLIPHLSPTAIVTDVASVKTAIAEPASQLWS----GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACL 151 (279)
T ss_dssp HHGGGSCTTCEEEECCSCCHHHHHHHHHHST----TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHH
T ss_pred HHHhhCCCCCEEEECCCCcHHHHHHHHHHhC----CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHH
Confidence 7888888899999998887776665554432 4563 476642 2222 1344445543 478889999
Q ss_pred HHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHh
Q 022834 147 ISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLD--PRTLLDVLD 206 (291)
Q Consensus 147 ~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~--~~~~~~~~~ 206 (291)
+++|+.+|.+++++++.....+.|++.|...+... .+.++ +...|++ .+....++.
T Consensus 152 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~-al~~~---~~~~~~~~~~~~~~~l~~ 209 (279)
T 2f1k_A 152 RSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSA-ALIQA---CAGEKDGDILKLAQNLAS 209 (279)
T ss_dssp HHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHH---HHTCSCHHHHHHHHHHCC
T ss_pred HHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH-HHHHH---HHhcccccchhHHHhhcC
Confidence 99999999988888888889999999997655444 33333 3445554 455555444
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-20 Score=155.45 Aligned_cols=177 Identities=15% Similarity=0.184 Sum_probs=140.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHCCCc--ccCCHHHHHh-hCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGAT--VGGSPAEVIK-KCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~~-~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|.||.+++..|.+.|+ +|++|||++++.+.+.+.|.. ...++.++++ ++|+||+|||. ..+.+++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~-~~~~~v~- 79 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA- 79 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCH-HHHHHHH-
Confidence 589999999999999999999999 899999999998888877764 3567878888 99999999955 5677888
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCC----hHhhc----ccceEEEe---cCCHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGS----KQPAE----TGQLVILS---AGEKALY 143 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~----~g~~~~~~---~g~~~~~ 143 (291)
+++.+.++++++|++++++.+...+.+.+.+.+. ++ .+|+.+. |..+. .+..++++ +++++..
T Consensus 80 --~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~---~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~ 154 (281)
T 2g5c_A 80 --KKLSYILSEDATVTDQGSVKGKLVYDLENILGKR---FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRL 154 (281)
T ss_dssp --HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG---EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHH
T ss_pred --HHHHhhCCCCcEEEECCCCcHHHHHHHHHhcccc---ceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHH
Confidence 6777778888999999988877777777777542 66 3666653 23322 45555666 5688889
Q ss_pred HHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHH
Q 022834 144 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTF 184 (291)
Q Consensus 144 ~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~ 184 (291)
+.++++|+.+|.+++++++...+.+.|+++|........+.
T Consensus 155 ~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~ 195 (281)
T 2g5c_A 155 KLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALV 195 (281)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888887779999999998755444433
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-20 Score=157.83 Aligned_cols=176 Identities=15% Similarity=0.212 Sum_probs=141.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhh----CCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK----CTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~----~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||.+|+..|.++|++|++|||++++.+.+.+.|+....++.+++++ +|+||+||| +..+.+++
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP-~~~~~~vl-- 85 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVP-MTAIDSLL-- 85 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSC-HHHHHHHH--
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCC-HHHHHHHH--
Confidence 58999999999999999999999999999999999998888898878888887764 699999997 46788888
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCCh-Hhh-------cccceEEEecC---CHH---
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSK-QPA-------ETGQLVILSAG---EKA--- 141 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~-------~~g~~~~~~~g---~~~--- 141 (291)
+++.+. +++++|+|+++..+...+.+.+.+. +..|+ .+|+.|+. ... ..+...+++++ +++
T Consensus 86 -~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~ 161 (341)
T 3ktd_A 86 -DAVHTH-APNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDIN 161 (341)
T ss_dssp -HHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCCC
T ss_pred -HHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhhc
Confidence 677765 6889999999998877777765543 46788 48998864 221 23445666654 455
Q ss_pred -----HHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHH
Q 022834 142 -----LYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNT 183 (291)
Q Consensus 142 -----~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~ 183 (291)
.++.+.++|+.+|.+++++++......+.+++.+......++
T Consensus 162 ~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~aL 208 (341)
T 3ktd_A 162 STWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAETL 208 (341)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHHHH
Confidence 789999999999999999988888888888888765444443
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.7e-20 Score=149.52 Aligned_cols=172 Identities=17% Similarity=0.254 Sum_probs=134.6
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-C-------CcccCCHHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-G-------ATVGGSPAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g-------~~~~~~~~~~~~~~dvvii~vp~~~~~~ 71 (291)
|||+||| +|.||..++..|.++|++|++++|++++.+.+.+. + +. ..+..++++++|+||+|+| +..++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~-~~~~~ 78 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIP-WEHAI 78 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSC-HHHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCC-hhhHH
Confidence 8999999 99999999999999999999999999888776543 2 33 3567788889999999996 56678
Q ss_pred HHHhccCccccccCCCcEEEEcCCCCH------------HHHHHHHHHHHhcCCcEEEc--ccCCChHhh--cccceEEE
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTVDH------------ETSIKISRAITSKGGHFLEA--PVSGSKQPA--ETGQLVIL 135 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~~~------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~g~~~~~ 135 (291)
+++ +++.+.+ +++++++++++.. ...+++.+.++ +..++.+ |+.+..... ..+...++
T Consensus 79 ~~~---~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (212)
T 1jay_A 79 DTA---RDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWDVP 152 (212)
T ss_dssp HHH---HHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEEEE
T ss_pred HHH---HHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCccEE
Confidence 888 6676666 5899999998533 33566776665 3567755 544433332 44556667
Q ss_pred ecCC-HHHHHHHHHHHHHh-ccceEeeCCCChhHHHHHHHHHHHHHH
Q 022834 136 SAGE-KALYDEAISALNVI-GKKAFFLGEVGNGAKMKLVVNMIMGCM 180 (291)
Q Consensus 136 ~~g~-~~~~~~~~~ll~~~-g~~~~~~~~~~~a~~~k~~~n~~~~~~ 180 (291)
++++ ++..+.+.++|+.+ |.+++++++.+.+.++|.+.|++....
T Consensus 153 ~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~~~~~ 199 (212)
T 1jay_A 153 VCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLILNIM 199 (212)
T ss_dssp EEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHHHHHH
T ss_pred EECCcHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHHHHHH
Confidence 7775 88899999999999 999989999999999999999875544
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=152.00 Aligned_cols=193 Identities=15% Similarity=0.202 Sum_probs=141.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-----------C--------------CcccCCHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----------G--------------ATVGGSPAEVIK 55 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----------g--------------~~~~~~~~~~~~ 55 (291)
+||+|||+|.||..++..|+++|++|++||+++++++.+.+. | +....++.++++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK 84 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence 389999999999999999999999999999999988766543 2 456678888889
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEE
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVIL 135 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 135 (291)
+||+||+|+|...+++..++ +++.+.+++++++++.+++.+. .++.+.+.. ...++....+. +...++++.+
T Consensus 85 ~aDlVi~av~~~~~~~~~v~--~~l~~~~~~~~il~s~tS~~~~--~~la~~~~~-~~~~ig~h~~~---p~~~~~lvev 156 (283)
T 4e12_A 85 DADLVIEAVPESLDLKRDIY--TKLGELAPAKTIFATNSSTLLP--SDLVGYTGR-GDKFLALHFAN---HVWVNNTAEV 156 (283)
T ss_dssp TCSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCH--HHHHHHHSC-GGGEEEEEECS---STTTSCEEEE
T ss_pred cCCEEEEeccCcHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CcceEEEccCC---CcccCceEEE
Confidence 99999999988654444333 6777778889999976666542 344444422 23455332222 2344556666
Q ss_pred ecC---CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 136 SAG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 136 ~~g---~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
+.+ +++.++.+.++++.+|+.+++++....+. ++++++ ...+.|++.++++.+++++++.+++..+
T Consensus 157 v~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~---i~nr~~----~~~~~ea~~l~~~g~~~~~~id~~~~~~ 225 (283)
T 4e12_A 157 MGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGY---VLNSLL----VPLLDAAAELLVDGIADPETIDKTWRIG 225 (283)
T ss_dssp EECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTT---THHHHH----HHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCE---EehHHH----HHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 655 68899999999999999988884433333 233333 4578999999999999999999998764
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=153.22 Aligned_cols=181 Identities=15% Similarity=0.222 Sum_probs=137.2
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+||| +|.||.+++..|++.|++|++|+|+++. +..++++++|+||+|||. ..+.+++ ++
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~aDvVilavp~-~~~~~vl---~~ 84 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVPI-NLTLETI---ER 84 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSCG-GGHHHHH---HH
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------CHHHHhcCCCEEEEeCCH-HHHHHHH---HH
Confidence 4899999 9999999999999999999999998652 566778899999999965 5688898 77
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEecC-CHHHHHHHHHHHHHhccce
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAG-EKALYDEAISALNVIGKKA 157 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~~~ 157 (291)
+.+.++++++|+++++......+.+.+.+ +..++ .+|++|+......+..++++.+ +++..+.+.++|+.+|.++
T Consensus 85 l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~~~ 161 (298)
T 2pv7_A 85 LKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKI 161 (298)
T ss_dssp HGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEE
T ss_pred HHhhcCCCcEEEECCCCCcHHHHHHHHhc---CCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHHHHcCCEE
Confidence 88888889999999888776666555432 34677 5688876654545665555544 6788899999999999988
Q ss_pred EeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022834 158 FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVL 205 (291)
Q Consensus 158 ~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~ 205 (291)
+++++.....+.+++.+........ +.+++ ...|++.+...++.
T Consensus 162 ~~~~~~~~d~~~a~~~~~p~~~a~~-l~~~l---~~~g~~~~~~~~la 205 (298)
T 2pv7_A 162 YQTNATEHDHNMTYIQALRHFSTFA-NGLHL---SKQPINLANLLALS 205 (298)
T ss_dssp EECCHHHHHHHHHHHTHHHHHHHHH-HHHHH---TTSSCCHHHHHHTC
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHH-HHHHH---HhcCCCHHHHHhhc
Confidence 8888767788888888875443333 33332 23677766555433
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=154.22 Aligned_cols=190 Identities=14% Similarity=0.189 Sum_probs=135.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH-----------HCC------------------CcccCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG------------------ATVGGSPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-----------~~g------------------~~~~~~~~ 51 (291)
|||+|||+|.||..|+..|+++||+|++||+++++++.+. +.| +...+++.
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 95 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence 4799999999999999999999999999999998877532 233 33466787
Q ss_pred HHHhhCCEEEEecCCHHHHH-HHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcc
Q 022834 52 EVIKKCTITIGMLADPAAAL-SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAET 129 (291)
Q Consensus 52 ~~~~~~dvvii~vp~~~~~~-~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 129 (291)
+.+++||+||+|||.+.+++ .++ +++.+.++++++|++.+++.+. .++.+.+.. ...++ .++. . +...
T Consensus 96 ~~~~~aD~Vi~avp~~~~~~~~v~---~~l~~~~~~~~iv~s~ts~i~~--~~l~~~~~~-~~~~~g~h~~-~---P~~~ 165 (302)
T 1f0y_A 96 SVVHSTDLVVEAIVENLKVKNELF---KRLDKFAAEHTIFASNTSSLQI--TSIANATTR-QDRFAGLHFF-N---PVPV 165 (302)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHH---HHHTTTSCTTCEEEECCSSSCH--HHHHTTSSC-GGGEEEEEEC-S---STTT
T ss_pred HhhcCCCEEEEcCcCcHHHHHHHH---HHHHhhCCCCeEEEECCCCCCH--HHHHHhcCC-cccEEEEecC-C---Cccc
Confidence 78899999999998866554 444 5677777788888866555432 233332211 11244 2232 1 1223
Q ss_pred cceEEEecC---CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 130 GQLVILSAG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 130 g~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
++...++.+ +++.++.+.++++.+|..++++++. .+ ++.++++ ..+++|++.++++.+++++++..++.
T Consensus 166 ~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~-~g---~i~nr~l----~~~~~Ea~~l~~~g~~~~~~id~~~~ 237 (302)
T 1f0y_A 166 MKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDT-PG---FIVNRLL----VPYLMEAIRLYERGDASKEDIDTAMK 237 (302)
T ss_dssp CCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSC-TT---TTHHHHH----HHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCc-cc---ccHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445556655 7899999999999999988888762 22 3444433 46789999999999999999988887
Q ss_pred hc
Q 022834 207 LG 208 (291)
Q Consensus 207 ~~ 208 (291)
.+
T Consensus 238 ~g 239 (302)
T 1f0y_A 238 LG 239 (302)
T ss_dssp HH
T ss_pred hC
Confidence 54
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=155.67 Aligned_cols=189 Identities=14% Similarity=0.182 Sum_probs=135.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhH--------HHHHCCC-------------cccCCHHHHHhhCCE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD--------ELVAHGA-------------TVGGSPAEVIKKCTI 59 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~--------~l~~~g~-------------~~~~~~~~~~~~~dv 59 (291)
|||+|||+|.||..||..|+++|++|++||+++++.. .+.+.|. ..+++++ .+++||+
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDl 133 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDL 133 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCE
Confidence 5899999999999999999999999999999988432 2334442 3456764 5789999
Q ss_pred EEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecC-
Q 022834 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG- 138 (291)
Q Consensus 60 vii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g- 138 (291)
||+|||.+..++..++ +++.+.++++++|++.+++.+. .++.+.+.. ...++....+.+ ....+++.++.+
T Consensus 134 VIeAVpe~~~vk~~v~--~~l~~~~~~~aIlasnTSsl~i--~~ia~~~~~-p~r~iG~HffnP---v~~m~LvEIv~g~ 205 (460)
T 3k6j_A 134 IVESVIEDMKLKKELF--ANLENICKSTCIFGTNTSSLDL--NEISSVLRD-PSNLVGIHFFNP---ANVIRLVEIIYGS 205 (460)
T ss_dssp EEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCH--HHHHTTSSS-GGGEEEEECCSS---TTTCCEEEEECCS
T ss_pred EEEcCCCCHHHHHHHH--HHHHhhCCCCCEEEecCCChhH--HHHHHhccC-CcceEEEEecch---hhhCCEEEEEeCC
Confidence 9999998777765554 6788888889998776555443 234332221 123553222221 223445555555
Q ss_pred --CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 139 --EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 139 --~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
+++.++.+.++++.+|+.++++++ ..+. ++++++ ...+.|++.++++.|++++++.+++.
T Consensus 206 ~Ts~e~~~~~~~l~~~lGk~~v~v~d-~pGf---i~Nril----~~~~~EA~~l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 206 HTSSQAIATAFQACESIKKLPVLVGN-CKSF---VFNRLL----HVYFDQSQKLMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEESS-CCHH---HHHHHH----HHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCEEEEEec-ccHH---HHHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 789999999999999999999987 3332 333433 35689999999999999999998886
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=147.57 Aligned_cols=162 Identities=13% Similarity=0.186 Sum_probs=121.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEE-EcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTV-WNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~-~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+|||+|.||.+++..|+++|++|++ |+|++++++.+.+. |.....+..+.++++|+||+|+| +..+.+++ +
T Consensus 24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp-~~~~~~v~---~ 99 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVP-YDSIADIV---T 99 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESC-GGGHHHHH---T
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCC-hHHHHHHH---H
Confidence 6999999999999999999999999999 99999999987754 76665566677889999999995 57889999 7
Q ss_pred ccccccCCCcEEEEcCCCCH------------HHHHHHHHHHHhcCCcEE-Ecc-----cCC-ChHhhcccceEEEecCC
Q 022834 79 GVLEQICPGKGYIDMSTVDH------------ETSIKISRAITSKGGHFL-EAP-----VSG-SKQPAETGQLVILSAGE 139 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~------------~~~~~~~~~~~~~~~~~~-~~~-----~~~-~~~~~~~g~~~~~~~g~ 139 (291)
++.+ + ++++|++++++.+ ...+.+.+.++. ..++ ..| +.. ++.....+..+++.+.+
T Consensus 100 ~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~--~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g~~ 175 (220)
T 4huj_A 100 QVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPG--AKVVKAFNTLPAAVLAADPDKGTGSRVLFLSGNH 175 (220)
T ss_dssp TCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTT--CEEEEESCSSCHHHHTSCSBCSSCEEEEEEEESC
T ss_pred Hhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCC--CCEEECCCCCCHHHhhhCcccCCCCeeEEEeCCC
Confidence 7776 5 6889999998762 155667666643 2333 222 111 11111112233455668
Q ss_pred HHHHHHHHHHHHHhccceEeeCCCChhHHHH
Q 022834 140 KALYDEAISALNVIGKKAFFLGEVGNGAKMK 170 (291)
Q Consensus 140 ~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k 170 (291)
++..+.++++|+.+|++++.+|+++.+.++.
T Consensus 176 ~~~~~~v~~l~~~~G~~~~~~G~l~~a~~~~ 206 (220)
T 4huj_A 176 SDANRQVAELISSLGFAPVDLGTLAASGPIQ 206 (220)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEeeCChhhcchhh
Confidence 8999999999999999999999988776643
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-19 Score=149.43 Aligned_cols=160 Identities=13% Similarity=0.166 Sum_probs=123.7
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHHHCCC--cccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGA--TVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||.+++..|.++ |++|++|||++++.+.+.+.|. ....+++++++++|+||+|||. ..+++++
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~v~-- 83 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPI-KKTIDFI-- 83 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCH-HHHHHHH--
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCH-HHHHHHH--
Confidence 6899999999999999999987 6799999999999988887776 3556777888899999999955 5568888
Q ss_pred cCccccc-cCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE-cccCC----ChHhhc----ccceEEEe---cCCHHHH
Q 022834 77 KGGVLEQ-ICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSG----SKQPAE----TGQLVILS---AGEKALY 143 (291)
Q Consensus 77 ~~~l~~~-l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~----~g~~~~~~---~g~~~~~ 143 (291)
+++.+. ++++++|++++++.+...+.+.+.+.+.+..++. +|++| ++.... .+..+.++ +++++..
T Consensus 84 -~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~~ 162 (290)
T 3b1f_A 84 -KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPNTI 162 (290)
T ss_dssp -HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTTHH
T ss_pred -HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHHHH
Confidence 677777 8889999999888776667777766544667774 67765 232222 45544444 3577889
Q ss_pred HHHHHHHHHhccceEeeCCCC
Q 022834 144 DEAISALNVIGKKAFFLGEVG 164 (291)
Q Consensus 144 ~~~~~ll~~~g~~~~~~~~~~ 164 (291)
+.++++|+.+|.+++.+++..
T Consensus 163 ~~v~~l~~~~G~~~~~~~~~~ 183 (290)
T 3b1f_A 163 PALQDLLSGLHARYVEIDAAE 183 (290)
T ss_dssp HHHHHHTGGGCCEEEECCHHH
T ss_pred HHHHHHHHHcCCEEEEcCHHH
Confidence 999999999999887777533
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-19 Score=160.31 Aligned_cols=189 Identities=16% Similarity=0.184 Sum_probs=138.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..||..|+++|++|++||+++++++.+.+ .| ++.+++.+ .+++|
T Consensus 7 kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a 85 (483)
T 3mog_A 7 TVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALAAA 85 (483)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGGGC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-HhcCC
Confidence 8999999999999999999999999999999998887653 23 23455664 57899
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEE-cCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEe
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYID-MSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 136 (291)
|+||+|||.+..++..++ +++.+.+++++++++ +|+..+. .+.+.+.. ...++....+. +....+++.++
T Consensus 86 DlVIeAVpe~~~vk~~v~--~~l~~~~~~~~IlasntSti~i~---~ia~~~~~-p~~~ig~hf~~---Pa~v~~Lvevv 156 (483)
T 3mog_A 86 DLVIEAASERLEVKKALF--AQLAEVCPPQTLLTTNTSSISIT---AIAAEIKN-PERVAGLHFFN---PAPVMKLVEVV 156 (483)
T ss_dssp SEEEECCCCCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH---HHTTTSSS-GGGEEEEEECS---STTTCCEEEEE
T ss_pred CEEEEcCCCcHHHHHHHH--HHHHHhhccCcEEEecCCCCCHH---HHHHHccC-ccceEEeeecC---hhhhCCeEEEe
Confidence 999999998776654433 677788888888865 5555553 23332211 12344222111 11123566677
Q ss_pred cC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022834 137 AG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG 209 (291)
Q Consensus 137 ~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~ 209 (291)
++ +++.++.+.++++.+|+.++++++ .| +++++++ ...++|++.++++.+.+++++.+++..+.
T Consensus 157 ~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~G-----fi~Nr~l----~~~~~Ea~~l~~~g~~~~~~id~a~~~~~ 224 (483)
T 3mog_A 157 SGLATAAEVVEQLCELTLSWGKQPVRCHSTPG-----FIVNRVA----RPYYSEAWRALEEQVAAPEVIDAALRDGA 224 (483)
T ss_dssp ECSSCCHHHHHHHHHHHHHTTCEEEEEESCTT-----TTHHHHT----HHHHHHHHHHHHTTCSCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCEEEEEeccCc-----chHHHHH----HHHHHHHHHHHHhCCCCHHHHHHHHHhcC
Confidence 76 789999999999999999998887 43 5566654 34789999999999999999999998643
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-19 Score=143.59 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=114.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||.+++..|+++|++|++|+|+++ .++++|+||+|+| +..+++++ +++
T Consensus 20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~---~~l 77 (209)
T 2raf_A 20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALA---KQY 77 (209)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHH---HHT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHH---HHH
Confidence 7999999999999999999999999999999865 3568999999996 78889998 677
Q ss_pred ccccCCCcEEEEcCCCCH--H-------H----HHHHHHHHHhcCCcEEEc--ccCCChHhhc--c--cceEEEecC-CH
Q 022834 81 LEQICPGKGYIDMSTVDH--E-------T----SIKISRAITSKGGHFLEA--PVSGSKQPAE--T--GQLVILSAG-EK 140 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~--~-------~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~--g~~~~~~~g-~~ 140 (291)
.+.++ ++++++++++.+ . . .+.+.+.++ +..++.+ ++.++..... . +...+++++ ++
T Consensus 78 ~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g~~~ 154 (209)
T 2raf_A 78 ATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDD 154 (209)
T ss_dssp HHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEECEEEEEESCH
T ss_pred HHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCceeEEcCCCH
Confidence 77776 899999998643 1 1 455555543 3456652 2222122221 1 233444554 56
Q ss_pred HHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHH
Q 022834 141 ALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMI 176 (291)
Q Consensus 141 ~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~ 176 (291)
+..+.++++|+.+|.+++++++.+.+.++|.+.|++
T Consensus 155 ~~~~~v~~ll~~~G~~~~~~~~i~~a~~~K~i~~l~ 190 (209)
T 2raf_A 155 SAKQRFTRALADSPLEVKDAGKLKRARELEAMGFMQ 190 (209)
T ss_dssp HHHHHHHHHTTTSSCEEEEEESGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCceEeCCCHhHHHHhcchHHHH
Confidence 889999999999999999999999999999988865
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-20 Score=151.07 Aligned_cols=161 Identities=15% Similarity=0.235 Sum_probs=116.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|.+.|++|++|+|+++ .+.+.+.|+... +..++++++|+||+|||. ++++.++ ++
T Consensus 20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~-~~~~~v~----~l 92 (201)
T 2yjz_A 20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHR-EHYDFLA----EL 92 (201)
Confidence 7899999999999999999999999999999877 555655676665 777888899999999965 5677776 24
Q ss_pred ccccCCCcEEEEcCCCCHH------HHHHHHHHHHhcCCcEE-EcccCCChHhhcccc----e-EEEecCCHHHHHHHHH
Q 022834 81 LEQICPGKGYIDMSTVDHE------TSIKISRAITSKGGHFL-EAPVSGSKQPAETGQ----L-VILSAGEKALYDEAIS 148 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~----~-~~~~~g~~~~~~~~~~ 148 (291)
.+. .++++||+++++.+. ..+.+.+.+... ..+ ..|-.+. .....|. . .++++++++.++.+.+
T Consensus 93 ~~~-~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~--~vvra~~n~~a-~~~~~g~l~g~~~~~~~g~~~~~~~~v~~ 168 (201)
T 2yjz_A 93 ADS-LKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGA--HVVKAFNTISA-WALQSGTLDASRQVFVCGNDSKAKDRVMD 168 (201)
Confidence 333 368899999999863 233444444321 111 2221110 0111122 1 4567778888999999
Q ss_pred HHHHhccceEeeCCCChhHHHHHH
Q 022834 149 ALNVIGKKAFFLGEVGNGAKMKLV 172 (291)
Q Consensus 149 ll~~~g~~~~~~~~~~~a~~~k~~ 172 (291)
+|+.+|.+++++|+++.+.++|.+
T Consensus 169 ll~~~G~~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 169 IARTLGLTPLDQGSLVAAKEIENY 192 (201)
Confidence 999999999999999999998854
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-19 Score=153.11 Aligned_cols=258 Identities=9% Similarity=-0.021 Sum_probs=168.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC--------cEEEEcCCcch-----hHHHHHC--------------CCcccCCHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF--------KVTVWNRTLSK-----CDELVAH--------------GATVGGSPAEVI 54 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~--------~V~~~~r~~~~-----~~~l~~~--------------g~~~~~~~~~~~ 54 (291)
||+|||+|+||++||..|+++|| +|++|.|+++. .+.+... ++..++++.+++
T Consensus 36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al 115 (391)
T 4fgw_A 36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV 115 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence 89999999999999999999875 49999998763 3334332 234567889999
Q ss_pred hhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCH---H----HHHHHHHHHHhcCCcEEEcccCCChHhh
Q 022834 55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH---E----TSIKISRAITSKGGHFLEAPVSGSKQPA 127 (291)
Q Consensus 55 ~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (291)
+++|+||++||. +.+++++ +++.+.++++..+|.++.+.- . ..+.+.+.+. ..+.++..|-+......
T Consensus 116 ~~ad~ii~avPs-~~~r~~l---~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~-~~~~vLsGPs~A~EVa~ 190 (391)
T 4fgw_A 116 KDVDIIVFNIPH-QFLPRIC---SQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELG-IQCGALSGANIATEVAQ 190 (391)
T ss_dssp TTCSEEEECSCG-GGHHHHH---HHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHC-CEEEEEECSCCHHHHHT
T ss_pred hcCCEEEEECCh-hhhHHHH---HHhccccCCCceeEEeccccccccccchhHHHHHHHHhC-ccceeccCCchHHHhhc
Confidence 999999999966 7899999 888888888999999988742 1 1233333322 12334566755554444
Q ss_pred cccceEEEecCCH---------HHHHHHHHHHHHhccceEeeCC-CChh--HHHH--------------HHHHHHHHHHH
Q 022834 128 ETGQLVILSAGEK---------ALYDEAISALNVIGKKAFFLGE-VGNG--AKMK--------------LVVNMIMGCMM 181 (291)
Q Consensus 128 ~~g~~~~~~~g~~---------~~~~~~~~ll~~~g~~~~~~~~-~~~a--~~~k--------------~~~n~~~~~~~ 181 (291)
...+.+++.+.+. ...+.++++|+.--++++...| +|.. .++| +..|.-.+.+.
T Consensus 191 ~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAALit 270 (391)
T 4fgw_A 191 EHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQR 270 (391)
T ss_dssp TCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 4444444443221 2245688888877777777777 4432 3344 33677777888
Q ss_pred HHHHHHHHHHHHc---CCCHHHHHHHHhhc----CCCcccccccccccccCCCC---------CCcccccHHHHHHHHHH
Q 022834 182 NTFSEGLVLAEKS---GLDPRTLLDVLDLG----GIANPMFKGKGPTMLQSNYA---------PAFPLKHQQKDMRLALA 245 (291)
Q Consensus 182 ~~~~E~~~~~~~~---g~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~---------~~~~~~~~~~d~~~~~~ 245 (291)
..++|..+++.+. |-++.++..+...+ ++.|+....++..+.++..+ .|. ........+.+.+
T Consensus 271 rGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~sSRNr~~G~~lg~~G~~~~~~~~~~~~g~-v~EGv~ta~~v~~ 349 (391)
T 4fgw_A 271 VGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAGGRNVKVARLMATSGKDAWECEKELLNGQ-SAQGLITCKEVHE 349 (391)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHSSHHHHHHHHHHHTCCCHHHHHHHHHTTC-CCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCceeecCCCcccceeEEecCCccHHHHHHHHhcCCCHHHHHHHHhCCC-EEehHHHHHHHHH
Confidence 9999999999987 44444443332211 12222222222223221111 121 2345666788899
Q ss_pred HHhhcCC--CchHHHHHHHHHH
Q 022834 246 LGDENAV--SMPIAAAANEAFK 265 (291)
Q Consensus 246 ~a~~~g~--~~p~~~~~~~~~~ 265 (291)
.++++++ ++|+++++++++.
T Consensus 350 l~~~~~v~~emPI~~~vy~IL~ 371 (391)
T 4fgw_A 350 WLETCGSVEDFPLFEAVYQIVY 371 (391)
T ss_dssp HHHHHTCSTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHh
Confidence 9999999 8999999999876
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-19 Score=148.30 Aligned_cols=189 Identities=12% Similarity=0.125 Sum_probs=125.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcE-EEEcCCcchhHHHHH-CCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKV-TVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V-~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+|||+|.||..++..|.++ ++| .+|+|++++.+.+.+ .|. ...+++++++++|+||+|||+ ..+.+++ +
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~-~~~~~v~---~ 76 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPD-RYIKTVA---N 76 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCT-TTHHHHH---T
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCCh-HHHHHHH---H
Confidence 6899999999999999999988 999 599999999888864 366 666777777889999999977 4578888 6
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhc-ccceEEEecCCHHHHHHHHHHHHHhccce
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAE-TGQLVILSAGEKALYDEAISALNVIGKKA 157 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~g~~~~~~~~~~ll~~~g~~~ 157 (291)
++. .++++|+++|++.+... +... ..+..+...++++++.... ....++.+.++++.++.++++++.+|.++
T Consensus 77 ~l~---~~~~ivi~~s~~~~~~~--l~~~--~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lG~~~ 149 (276)
T 2i76_A 77 HLN---LGDAVLVHCSGFLSSEI--FKKS--GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY 149 (276)
T ss_dssp TTC---CSSCCEEECCSSSCGGG--GCSS--SEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCE
T ss_pred Hhc---cCCCEEEECCCCCcHHH--HHHh--hccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHHHHhCCCE
Confidence 664 57889999887655421 1111 0011122344555444433 34455666777778999999999999888
Q ss_pred EeeCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHh
Q 022834 158 FFLGEVGNG---AKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPR--TLLDVLD 206 (291)
Q Consensus 158 ~~~~~~~~a---~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~--~~~~~~~ 206 (291)
+++++.+.. ...++..|.+ ..++.|+..++.+.|++.+ .+.+++.
T Consensus 150 ~~v~~~~~~~~~~~~~l~~n~~----~~~~~~a~~~~~~~Gl~~~~a~~~~l~~ 199 (276)
T 2i76_A 150 FVIPSEKKKAYHLAAVIASNFP----VALAYLSKRIYTLLGLDEPELLIHTLMK 199 (276)
T ss_dssp EECCGGGHHHHHHHHHHHHTTH----HHHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 888754322 3345666644 3466777788999999987 4444444
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-18 Score=137.01 Aligned_cols=165 Identities=16% Similarity=0.213 Sum_probs=121.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|.+.|++|++++|++++.+.+.+.|+... +..++++++|+||+|+|. .++++++ + +
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~---~-l 102 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLC---S-L 102 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGG---G-G
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHH---H-H
Confidence 68999999999999999999999999999999998888877777665 777888899999999974 5666766 4 5
Q ss_pred ccccCCCcEEEEcCCCCHHHH--------HHHHHHHHhcCCcEEE--cccCCChHh--hcccc-eEEEecCCHHHHHHHH
Q 022834 81 LEQICPGKGYIDMSTVDHETS--------IKISRAITSKGGHFLE--APVSGSKQP--AETGQ-LVILSAGEKALYDEAI 147 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~g~-~~~~~~g~~~~~~~~~ 147 (291)
.+.+ +++++++++++.+... +.+.+.++ +..++. .++.+.... ...+. ..++.+++++..+.++
T Consensus 103 ~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~--~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~ 179 (215)
T 2vns_A 103 SDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP--TCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVS 179 (215)
T ss_dssp HHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT--TSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHHH
T ss_pred HHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC--CCeEEeccccccHhHhcccccCCceeEEEecCCHHHHHHHH
Confidence 5555 7899999999986532 11222222 222332 111111111 11223 3456777899999999
Q ss_pred HHHHHhccceEeeCCCChhHHHHHHHH
Q 022834 148 SALNVIGKKAFFLGEVGNGAKMKLVVN 174 (291)
Q Consensus 148 ~ll~~~g~~~~~~~~~~~a~~~k~~~n 174 (291)
++|+.+|.+++++++.+.+.+++.+.+
T Consensus 180 ~ll~~~G~~~~~~g~~~~~~~~e~~~~ 206 (215)
T 2vns_A 180 EMALAMGFMPVDMGSLASAWEVEAMPL 206 (215)
T ss_dssp HHHHHTTCEEEECCSGGGHHHHHHSCC
T ss_pred HHHHHcCCceEeecchhhhhHhhhhhh
Confidence 999999999999999999988875443
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=156.86 Aligned_cols=186 Identities=16% Similarity=0.197 Sum_probs=133.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHH-----------HHCC-------------CcccCCHHHHHhh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~ 56 (291)
|||+|||+|.||..||..|+++||+|++||+++++++.. .+.| ++.++++ +.+++
T Consensus 315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 393 (715)
T 1wdk_A 315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN 393 (715)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCC
Confidence 589999999999999999999999999999999887653 2234 2345566 66789
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEe
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 136 (291)
||+||+|||.+..++..++ .++.+.+++++++++.+++.+.+ ++.+.+. +.-.++....+. +...++++.++
T Consensus 394 aDlVIeaV~e~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~--~la~~~~-~~~~~ig~hf~~---P~~~~~lvevv 465 (715)
T 1wdk_A 394 VDLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTISIS--LLAKALK-RPENFVGMHFFN---PVHMMPLVEVI 465 (715)
T ss_dssp CSEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCHH--HHGGGCS-CGGGEEEEECCS---STTTCCEEEEE
T ss_pred CCEEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEeCCCCCCHH--HHHHHhc-CccceEEEEccC---CcccCceEEEE
Confidence 9999999998777766554 56777888888888766554432 3333221 112344322222 12234445555
Q ss_pred cC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022834 137 AG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVL 205 (291)
Q Consensus 137 ~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~ 205 (291)
.+ +++.++.+.++++.+|+.++++++ .| . ++++++ ...++|++.++++ |++++++.+++
T Consensus 466 ~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G--f---i~Nril----~~~~~Ea~~l~~~-G~~~~~id~~~ 528 (715)
T 1wdk_A 466 RGEKSSDLAVATTVAYAKKMGKNPIVVNDCPG--F---LVNRVL----FPYFGGFAKLVSA-GVDFVRIDKVM 528 (715)
T ss_dssp ECSSCCHHHHHHHHHHHHHTTCEEEEEESCTT--T---THHHHH----HHHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHhCCEeEEEcCCCC--h---hhhHHH----HHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 54 789999999999999999998887 33 2 233332 4678999999987 99999999888
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-17 Score=152.65 Aligned_cols=186 Identities=15% Similarity=0.169 Sum_probs=131.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC-------------CcccCCHHHHHhh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~ 56 (291)
|||+|||+|.||..||..|+++||+|++||+++++++...+ .| ++.+++. +.+++
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 391 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD 391 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence 58999999999999999999999999999999988765422 22 2344566 56789
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEe
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 136 (291)
||+||+|||.+..++..++ .++.+.+++++++++.+++.+.+ .+.+.+. +.-.++....+.++ ...+++.++
T Consensus 392 aDlVIeaVpe~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~--~la~~~~-~p~~~iG~hf~~P~---~~~~lvevv 463 (725)
T 2wtb_A 392 VDMVIEAVIENISLKQQIF--ADLEKYCPQHCILASNTSTIDLN--KIGERTK-SQDRIVGAHFFSPA---HIMPLLEIV 463 (725)
T ss_dssp CSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH--HHTTTCS-CTTTEEEEEECSST---TTCCEEEEE
T ss_pred CCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCHH--HHHHHhc-CCCCEEEecCCCCc---ccCceEEEE
Confidence 9999999998877766554 56777888888887765554432 2332221 11234432222211 223445555
Q ss_pred cC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022834 137 AG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVL 205 (291)
Q Consensus 137 ~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~ 205 (291)
.| +++.++.+.++++.+|+.++++++ .| . +.|-+ ....++|+..++++ |++++++.+++
T Consensus 464 ~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G--f----i~Nri---l~~~~~Ea~~l~~~-G~~~e~id~~~ 526 (725)
T 2wtb_A 464 RTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTG--F----AVNRM---FFPYTQAAMFLVEC-GADPYLIDRAI 526 (725)
T ss_dssp ECSSCCHHHHHHHHHHHHHTTCEEEEEESSTT--T----THHHH---HHHHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHhCCEEEEECCCcc--H----HHHHH---HHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 55 889999999999999999998887 33 2 33322 24578999999988 99999999988
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=143.22 Aligned_cols=187 Identities=19% Similarity=0.285 Sum_probs=128.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC-----------CcccCCHHHHHhhCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-----------ATVGGSPAEVIKKCT 58 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-----------~~~~~~~~~~~~~~d 58 (291)
|||+|||+|.||..||..|+++|++|++||+++++++...+ .| ..++.+. +.+++||
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~aD 116 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVD 116 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCCC
Confidence 58999999999999999999999999999999987765432 11 1234566 4578999
Q ss_pred EEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec-
Q 022834 59 ITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA- 137 (291)
Q Consensus 59 vvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 137 (291)
+||+|||.+..++..++ +++.+.++++++|++.+++.+ .. .+.+.+. +...++....+. | ....+++.++.
T Consensus 117 lVIeaVpe~~~~k~~v~--~~l~~~~~~~~ii~snTs~~~-~~-~la~~~~-~~~~~ig~hf~~-P--~~~~~lvevv~g 188 (463)
T 1zcj_A 117 LVVEAVFEDMNLKKKVF--AELSALCKPGAFLCTNTSALN-VD-DIASSTD-RPQLVIGTHFFS-P--AHVMRLLEVIPS 188 (463)
T ss_dssp EEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSC-HH-HHHTTSS-CGGGEEEEEECS-S--TTTCCEEEEEEC
T ss_pred EEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEeCCCCcC-HH-HHHHHhc-CCcceEEeecCC-C--cccceeEEEeCC
Confidence 99999998765554443 567777878888887443333 22 4444332 112344222221 1 12334445554
Q ss_pred --CCHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 138 --GEKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 138 --g~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
++++.++.+.++++.+|+.++++++ .| . +.|-+. .....|++.++++ |++++++.+++.
T Consensus 189 ~~t~~e~~~~~~~l~~~lGk~~v~v~~~~g--f----i~Nrll---~~~~~ea~~l~~~-G~~~~~id~~~~ 250 (463)
T 1zcj_A 189 RYSSPTTIATVMSLSKKIGKIGVVVGNCYG--F----VGNRML---APYYNQGFFLLEE-GSKPEDVDGVLE 250 (463)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEBCCSTT--T----THHHHH---HHHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCEEEEECCCcc--H----HHHHHH---HHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 3889999999999999999998887 33 2 223222 2346888888776 899998888876
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-16 Score=135.93 Aligned_cols=191 Identities=15% Similarity=0.152 Sum_probs=126.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch-hHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC-
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG- 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~- 78 (291)
|||+|||+|.||.+++..|.+.|++|++++|++++ .+...+.|+... +..++++++|+||+|||. ....+++ +
T Consensus 17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~-~~~~~v~---~~ 91 (338)
T 1np3_A 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPD-EFQGRLY---KE 91 (338)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCH-HHHHHHH---HH
T ss_pred CEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCc-HHHHHHH---HH
Confidence 68999999999999999999999999999998776 555666788766 888888999999999966 5568888 6
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHh------hcccceEEEe---cCCHHHHHHHHH
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQP------AETGQLVILS---AGEKALYDEAIS 148 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~g~~~~~~---~g~~~~~~~~~~ 148 (291)
++.+.++++++|+++++... .+.......++.++ .+| .++... ...|...+++ ..+.+..+.+.+
T Consensus 92 ~i~~~l~~~~ivi~~~gv~~----~~~~~~~~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~ 166 (338)
T 1np3_A 92 EIEPNLKKGATLAFAHGFSI----HYNQVVPRADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALS 166 (338)
T ss_dssp HTGGGCCTTCEEEESCCHHH----HTTSSCCCTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHH
T ss_pred HHHhhCCCCCEEEEcCCchh----HHHhhcCCCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHH
Confidence 78888888999998743211 12211112244566 566 333221 1124444433 235677889999
Q ss_pred HHHHhcc-c--eEeeCCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022834 149 ALNVIGK-K--AFFLGEVGNGAKMKLVVN-MIMGCMMNTFSEGLVLAEKSGLDPRTL 201 (291)
Q Consensus 149 ll~~~g~-~--~~~~~~~~~a~~~k~~~n-~~~~~~~~~~~E~~~~~~~~g~~~~~~ 201 (291)
+++.+|. . ++.+..........+..+ .+......+++.++..+.+.|++++..
T Consensus 167 l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 167 YACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp HHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999998 4 555543223333334333 121222344444444566789988754
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=128.77 Aligned_cols=155 Identities=13% Similarity=0.141 Sum_probs=117.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||.+|+..|.++||+|++|++. ++ +.++| |+|||.. .+.+++ +++
T Consensus 7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl---~~l 61 (232)
T 3dfu_A 7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYV---EKL 61 (232)
T ss_dssp CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHH---HHH
T ss_pred cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHH---HHH
Confidence 79999999999999999999999999999983 12 56789 9999884 789898 788
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEe
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF 159 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~ 159 (291)
.+.++++++|+|+|...+.. +.+.....+..|+ .+|+.+. ...+.+++++.++.++++++.+|.+++.
T Consensus 62 ~~~l~~g~ivvd~sgs~~~~---vl~~~~~~g~~fvg~HPm~g~--------~~~i~a~d~~a~~~l~~L~~~lG~~vv~ 130 (232)
T 3dfu_A 62 SAFARRGQMFLHTSLTHGIT---VMDPLETSGGIVMSAHPIGQD--------RWVASALDELGETIVGLLVGELGGSIVE 130 (232)
T ss_dssp HTTCCTTCEEEECCSSCCGG---GGHHHHHTTCEEEEEEEEETT--------EEEEEESSHHHHHHHHHHHHHTTCEECC
T ss_pred HHhcCCCCEEEEECCcCHHH---HHHHHHhCCCcEEEeeeCCCC--------ceeeeCCCHHHHHHHHHHHHHhCCEEEE
Confidence 88888999999987554322 2222335678888 6888654 2345556888899999999999999999
Q ss_pred eCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022834 160 LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK 193 (291)
Q Consensus 160 ~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~ 193 (291)
+++.......-.+. ..+.+..+..++.++.+.
T Consensus 131 ~~~~~hd~~~AAvs--h~nhLv~L~~~A~~ll~~ 162 (232)
T 3dfu_A 131 IADDKRAQLAAALT--YAGFLSTLQRDASYFLDE 162 (232)
T ss_dssp CCGGGHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 88755554422222 255567788888877754
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-15 Score=128.31 Aligned_cols=192 Identities=17% Similarity=0.152 Sum_probs=137.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH-----------HCC--------------CcccCCHHHHHhh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG--------------ATVGGSPAEVIKK 56 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-----------~~g--------------~~~~~~~~~~~~~ 56 (291)
||+|||+|.||..||..++.+|++|++||++++.++... +.| +..+++..+++++
T Consensus 8 ~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~~~ 87 (319)
T 3ado_A 8 DVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVEG 87 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHTTT
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHhcc
Confidence 799999999999999999999999999999988765422 122 2345678888999
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEe
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 136 (291)
||+|+.|+|....++.-+| .++.+..++++++...|++.+. .++.+.+.. .-.++....+.++.. -+++-++
T Consensus 88 ad~ViEav~E~l~iK~~lf--~~l~~~~~~~aIlaSNTSsl~i--s~ia~~~~~-p~r~ig~HffNP~~~---m~LVEiv 159 (319)
T 3ado_A 88 VVHIQECVPENLDLKRKIF--AQLDSIVDDRVVLSSSSSCLLP--SKLFTGLAH-VKQCIVAHPVNPPYY---IPLVELV 159 (319)
T ss_dssp EEEEEECCCSCHHHHHHHH--HHHHTTCCSSSEEEECCSSCCH--HHHHTTCTT-GGGEEEEEECSSTTT---CCEEEEE
T ss_pred CcEEeeccccHHHHHHHHH--HHHHHHhhhcceeehhhhhccc--hhhhhhccC-CCcEEEecCCCCccc---cchHHhc
Confidence 9999999999999888776 7788888888888776666543 233332222 123453333332222 2344455
Q ss_pred cC---CHHHHHHHHHHHHHhccceEee-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022834 137 AG---EKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG 209 (291)
Q Consensus 137 ~g---~~~~~~~~~~ll~~~g~~~~~~-~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~ 209 (291)
.+ +++.++.+.++++.+|++++++ .+ ..+.. .|= ....++.|++.+.+.-..+++++-.++..+.
T Consensus 160 ~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd-~pGFi----~NR---l~~~~~~EA~~lv~eGvas~edID~~~~~g~ 228 (319)
T 3ado_A 160 PHPETSPATVDRTHALMRKIGQSPVRVLKE-IDGFV----LNR---LQYAIISEAWRLVEEGIVSPSDLDLVMSDGL 228 (319)
T ss_dssp ECTTCCHHHHHHHHHHHHHTTCEEEECSSC-CTTTT----HHH---HHHHHHHHHHHHHHTTSSCHHHHHHHHHTTH
T ss_pred CCCCCcHHHHHHHHHHHHHhCCccCCcCCC-CCCEe----HHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 54 7889999999999999887755 44 22333 232 2357889999999988899999988887653
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-15 Score=134.20 Aligned_cols=265 Identities=10% Similarity=0.044 Sum_probs=148.8
Q ss_pred CeEEEEecChhhHHHHHHHHh-CCCcEEEEc---CCcchhHHHH-HCC---------C----------cccCCHHHHHhh
Q 022834 1 MEVGFLGLGIMGKAISMNLLR-NGFKVTVWN---RTLSKCDELV-AHG---------A----------TVGGSPAEVIKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~-~g~~V~~~~---r~~~~~~~l~-~~g---------~----------~~~~~~~~~~~~ 56 (291)
|||+|||+|.||..++..|++ +||+|++|+ |++++++.+. +.| . ..++++++++++
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG 82 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence 699999999999999999988 599999999 8777877743 322 1 144577788889
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--CCcEEE---ccc----CCChHhh
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHFLE---APV----SGSKQPA 127 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--~~~~~~---~~~----~~~~~~~ 127 (291)
+|+||+|||. ...++++ +++.+.++++++|++.++...... ...+.+.+. ...+.. .|. .++....
T Consensus 83 aD~Vilav~~-~~~~~v~---~~l~~~l~~~~ivv~~~~~~G~~~-~~~~~l~~~~~~~v~~~~~~~~~~~~~~gpg~~v 157 (404)
T 3c7a_A 83 ADVVILTVPA-FAHEGYF---QAMAPYVQDSALIVGLPSQAGFEF-QCRDILGDKAAAVSMMSFETLPWACRIKEFGRKV 157 (404)
T ss_dssp CSEEEECSCG-GGHHHHH---HHHTTTCCTTCEEEETTCCTTHHH-HHHHHHGGGGGTSEEEEESSCSEEEEEEETTTEE
T ss_pred CCEEEEeCch-HHHHHHH---HHHHhhCCCCcEEEEcCCCccHHH-HHHHHHHhcCCCeEEEEecCchHhhcccCCCcEE
Confidence 9999999965 5688888 788888888899888543322111 111223221 111222 121 1111001
Q ss_pred c-cc-ceEEEec---CCHHHHHHHHHHHHHhcc-c-eEeeCCC-ChhHH----------H-H--------------HHH-
Q 022834 128 E-TG-QLVILSA---GEKALYDEAISALNVIGK-K-AFFLGEV-GNGAK----------M-K--------------LVV- 173 (291)
Q Consensus 128 ~-~g-~~~~~~~---g~~~~~~~~~~ll~~~g~-~-~~~~~~~-~~a~~----------~-k--------------~~~- 173 (291)
. .+ ...+.++ ++.+..+.+.++|..++. . +.+..++ +...+ + . +..
T Consensus 158 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~di~~~~l~~N~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 237 (404)
T 3c7a_A 158 EVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMSYSFVHPAILFGRWGSWDGKPVPEAPLFYQG 237 (404)
T ss_dssp EEEEECSEEEEEEECCSSCCSCHHHHHHHHHCSSSEEEECSCHHHHHHTTCTTHHHHHHHHHHTTCCSCCBSSCCBSGGG
T ss_pred EEEEECceEEEEEccCCcchHHHHHHHHHHhCCCCceeEcCCEeeeeecCCceeccHHHHHHHHhhhcCCCCCCCccccC
Confidence 0 01 1011122 111334567777888776 3 4444332 11111 0 0 111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHc-----CCCHH---HHHHHHhhcC-----CCccc---cccc--ccccc------cC--
Q 022834 174 --NMIMGCMMNTFSEGLVLAEKS-----GLDPR---TLLDVLDLGG-----IANPM---FKGK--GPTML------QS-- 225 (291)
Q Consensus 174 --n~~~~~~~~~~~E~~~~~~~~-----g~~~~---~~~~~~~~~~-----~~s~~---~~~~--~~~~~------~~-- 225 (291)
+.....+..+..|..+++++. |++++ .+.+.+.... ..+++ ++.. .+.+. +.
T Consensus 238 ~~~~~~~l~~~~~~E~~~va~a~~~~~~G~~~~~~~~~~d~~~~~~~~~~~~~~s~~~~~~~~~~~~d~~~P~~~te~~~ 317 (404)
T 3c7a_A 238 IDQATADMLTACSNECKDVANAIMAACPGNDLSDVKDIYQWYLEYYHEDIQDDHDLYHAITTNKSYKGLVHPVKAVDGGV 317 (404)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCTTCCCHHHHHHHHSTTTBSCCSSHHHHHHTBGGGTTCBCCEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCHHHHHHHhCCCccCChhhHHHHHHhhhhhccCCCCCCCcCCCc
Confidence 134455678889999999999 98762 1223332110 11111 1211 00110 00
Q ss_pred --CCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 226 --NYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 226 --~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
++..+...+...--...+.+.|+++|+++|+++++++++.....+
T Consensus 318 ~~d~~~r~~~Edv~~~~~~v~~la~~~gV~tP~~~~l~~l~~~~~~~ 364 (404)
T 3c7a_A 318 APDFGNRYLTEDIPMGMIVFKGVAIAAGVAIPSNDKLIMWAQEKIGK 364 (404)
T ss_dssp EECCCSSTTTTTTTTTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTC
T ss_pred cCCccccccccccccchHHHHHHHHHhCCCCchHHHHHHHHHHHhCc
Confidence 001111111011123578999999999999999999999877554
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-13 Score=119.06 Aligned_cols=199 Identities=16% Similarity=0.112 Sum_probs=121.9
Q ss_pred CeEEEEecChhhHHHHHHHHhC------CCcEEEEcCCc-chhHHHHHCCCcc----cCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN------GFKVTVWNRTL-SKCDELVAHGATV----GGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~------g~~V~~~~r~~-~~~~~l~~~g~~~----~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|||+|.||.+++.+|.++ |++|++++++. ...+...+.|+.. ..++.++++++|+||+++|+. .
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~-~ 133 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDA-A 133 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHH-H
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChH-H
Confidence 5899999999999999999998 99998776654 4455556678775 258899999999999999764 4
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHH--HHHhcCCcEE-EcccCCChH----hh-c-----ccceEEEe
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISR--AITSKGGHFL-EAPVSGSKQ----PA-E-----TGQLVILS 136 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~----~~-~-----~g~~~~~~ 136 (291)
..+++ +++.+.++++++|.. +.+.. ...+.+ .....++.++ .+|-..+.. .. . .|-...++
T Consensus 134 ~~eVl---~eI~p~LK~GaILs~-AaGf~--I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liA 207 (525)
T 3fr7_A 134 QADNY---EKIFSHMKPNSILGL-SHGFL--LGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 207 (525)
T ss_dssp HHHHH---HHHHHHSCTTCEEEE-SSSHH--HHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEE
T ss_pred HHHHH---HHHHHhcCCCCeEEE-eCCCC--HHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCccEEEE
Confidence 56687 678889988988544 44422 222222 1112245555 666333222 01 1 23332333
Q ss_pred c-C--CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 137 A-G--EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVN--MIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 137 ~-g--~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n--~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
. . +.+..+.+..+++.+|...++-.......-..++.- .+.....+++.-+.+.+.+.|++++..+..+.
T Consensus 208 v~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAlieA~~d~lVe~G~~pe~Ay~~~~ 282 (525)
T 3fr7_A 208 VHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTV 282 (525)
T ss_dssp EEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 2 457788999999999987432222221221122211 11111223333334557789999986665544
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-16 Score=133.99 Aligned_cols=108 Identities=16% Similarity=0.271 Sum_probs=88.6
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CC-cEEEEcCCcchhHHHHHC-C--CcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GF-KVTVWNRTLSKCDELVAH-G--ATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~-~V~~~~r~~~~~~~l~~~-g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|+|+|||+|.||..++..|.+. |+ +|.+|||++++.+.+.+. + +....+++++++++|+|++|+|. .+.++
T Consensus 136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v~- 211 (312)
T 2i99_A 136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPIL- 211 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCCB-
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCccc-
Confidence 5899999999999999999875 76 899999999999988765 5 67778999999999999999975 23444
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
.. +.++++++|+++++..|.. .++.+.+.+++..|+|
T Consensus 212 --~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD 248 (312)
T 2i99_A 212 --FG--EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYVD 248 (312)
T ss_dssp --CG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEES
T ss_pred --CH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEEC
Confidence 22 4677899999998888764 5666666677888998
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-14 Score=118.65 Aligned_cols=157 Identities=17% Similarity=0.225 Sum_probs=105.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcE-EEEcCCcchhHHHHHCCCcccCCHHHHH-hhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKV-TVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+|||+|.||..++..|.+.|+++ .+||+++ +.+. .++++++++ .++|+|++|+|+..+.+.+.
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~---- 68 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAVKDYAE---- 68 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHHHHHHH----
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHHHHHHH----
Confidence 89999999999999999999899997 6899985 3321 567899988 68999999998765544433
Q ss_pred ccccccCCCcEEEEcCCCCH---HHHHHHHHHHHhcCCc-EEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhc
Q 022834 79 GVLEQICPGKGYIDMSTVDH---ETSIKISRAITSKGGH-FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIG 154 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g 154 (291)
..+..|+.+++.++..+ +..+++.+...+.+.. +++.++.++......+.. +++...+...++.++..+
T Consensus 69 ---~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 141 (236)
T 2dc1_A 69 ---KILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASE----LIEEIVLTTRKNWRQFGR 141 (236)
T ss_dssp ---HHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTGG----GEEEEEEEEEEEGGGTTS
T ss_pred ---HHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhhc----cccEEEEEEEcChHHcCc
Confidence 34557888998887653 2236777777777877 568888888766655543 111111111111234456
Q ss_pred cceEeeCCCChh-HHHHHHHHHH
Q 022834 155 KKAFFLGEVGNG-AKMKLVVNMI 176 (291)
Q Consensus 155 ~~~~~~~~~~~a-~~~k~~~n~~ 176 (291)
.++++.|+.+.+ ..+|...|..
T Consensus 142 ~~~~~~G~~~~~~~~~~~~~n~~ 164 (236)
T 2dc1_A 142 KGVIFEGSASEAAQKFPKNLNVA 164 (236)
T ss_dssp CEEEEEEEHHHHHHHSTTCCHHH
T ss_pred ceEEEeccHHHHHHHCCchHHHH
Confidence 666777764333 3555555654
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=117.11 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=90.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|||||+|.||..++..|...|++|++|||++++.+.+.+.|+... +.+++++++|+|++++|....++.++. +++
T Consensus 156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~--~~~ 232 (330)
T 2gcg_A 156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCN--KDF 232 (330)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBS--HHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhC--HHH
Confidence 68999999999999999999999999999998877776666677665 888999999999999988666666551 234
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
.+.++++.++|++|++.+.+.+.+.+.+.+..+
T Consensus 233 ~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i 265 (330)
T 2gcg_A 233 FQKMKETAVFINISRGDVVNQDDLYQALASGKI 265 (330)
T ss_dssp HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSS
T ss_pred HhcCCCCcEEEECCCCcccCHHHHHHHHHcCCc
Confidence 566778999999999988777778877766544
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=114.78 Aligned_cols=116 Identities=13% Similarity=0.214 Sum_probs=93.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+++.|...|++|++|||++++.+. .....++++++++||+|++++|...+++.++. ++.
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~ 195 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPLTDKTRGMVN--SRL 195 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCCCTTTTTCBS--HHH
T ss_pred chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeeccccchhhhh--HHH
Confidence 58999999999999999999999999999998765432 44556899999999999999997666666552 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
.+.++++.++|+++.+.+...+.+.+.+.+..+......++..
T Consensus 196 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~ 238 (290)
T 3gvx_A 196 LANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWN 238 (290)
T ss_dssp HTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTT
T ss_pred HhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccC
Confidence 5678899999999999988888898888877665554444443
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-13 Score=116.99 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=90.6
Q ss_pred CeEEEEecChhhHHHHHHHH-hCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
++|||||+|.||..++..+. ..|++|++|||++++.+...+.|+....+.+++++++|+|++++|....++.++. ++
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~--~~ 241 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLID--EA 241 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBC--HH
T ss_pred CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhh--HH
Confidence 58999999999999999999 9999999999998776666555777666888999999999999998766666652 13
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
..+.++++.++|+++.+.+...+.+.+.+.+.
T Consensus 242 ~l~~mk~gailin~srg~~vd~~aL~~aL~~~ 273 (348)
T 2w2k_A 242 FFAAMKPGSRIVNTARGPVISQDALIAALKSG 273 (348)
T ss_dssp HHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred HHhcCCCCCEEEECCCCchhCHHHHHHHHHhC
Confidence 55667889999999999887778888877664
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.3e-13 Score=114.96 Aligned_cols=111 Identities=12% Similarity=0.140 Sum_probs=89.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|+|||+|.||..++..|...|++|++|||++++ +...+.|+.. .+.+++++++|+|++|+|....++.++. +++
T Consensus 151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~--~~~ 226 (334)
T 2dbq_A 151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLIN--EER 226 (334)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBC--HHH
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhhC--HHH
Confidence 68999999999999999999999999999999877 5454557665 4888999999999999998766666652 144
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
.+.++++.++|++|.+.+...+.+.+.+.+..+..
T Consensus 227 ~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~g 261 (334)
T 2dbq_A 227 LKLMKKTAILINIARGKVVDTNALVKALKEGWIAG 261 (334)
T ss_dssp HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSE
T ss_pred HhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeE
Confidence 56678899999999998877777887777654433
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-13 Score=116.72 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=94.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|||||+|.||..+++.|...|++|++|||++...+...+.|+....+.++++++||+|++++|...+...++. ++.
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~--~~~ 242 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFN--KEL 242 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBS--HHH
T ss_pred CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhc--HHH
Confidence 589999999999999999999999999999987776666677888778999999999999999997666665552 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
...++++.++|+++.+.....+.+.+.+.+..+.
T Consensus 243 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 276 (351)
T 3jtm_A 243 IGKLKKGVLIVNNARGAIMERQAVVDAVESGHIG 276 (351)
T ss_dssp HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred HhcCCCCCEEEECcCchhhCHHHHHHHHHhCCcc
Confidence 5668899999999999888888888888765443
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=112.43 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=70.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|||||+|.||..+|+.+...|++|++|||++++ ..+.....++++++++||+|++++|...+++.++. ++.
T Consensus 172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~--~~~ 244 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVD--ASL 244 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TSCCEECSSHHHHHHTCSEEEECC----------C--HHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----ccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhh--HHH
Confidence 68999999999999999999999999999998765 23455567899999999999999997777777662 345
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
.+.++++.++|+++.+.....+.+.+.+.+..+.
T Consensus 245 l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~ 278 (340)
T 4dgs_A 245 LQALGPEGIVVNVARGNVVDEDALIEALKSGTIA 278 (340)
T ss_dssp HHHTTTTCEEEECSCC--------------CCSS
T ss_pred HhcCCCCCEEEECCCCcccCHHHHHHHHHcCCce
Confidence 6678899999999999988888888877665443
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.4e-13 Score=114.10 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=87.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|||||+|.||..+++.|...|++|++|||++++.. |.....+.+++++++|+|++++|....++.++. ++.
T Consensus 165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~--~~~ 237 (333)
T 3ba1_A 165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELASNSDILVVACPLTPETTHIIN--REV 237 (333)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHHHTCSEEEECSCCCGGGTTCBC--HHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHHhcCCEEEEecCCChHHHHHhh--HHH
Confidence 5899999999999999999999999999999877542 555567899999999999999988666666652 134
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
.+.++++.++|+++.+.+...+.+.+.+.+..+
T Consensus 238 l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i 270 (333)
T 3ba1_A 238 IDALGPKGVLINIGRGPHVDEPELVSALVEGRL 270 (333)
T ss_dssp HHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSS
T ss_pred HhcCCCCCEEEECCCCchhCHHHHHHHHHcCCC
Confidence 556778999999999988877888888876544
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=111.49 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=91.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+++.+...|++|++|||++.+.+...+.|+... +.+++++++|+|++++|...+...++. ++.
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~ 222 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVN--AEL 222 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCCCHHHHHHhC--HHH
Confidence 58999999999999999999999999999998755555555576544 899999999999999997666666552 255
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
...++++.++|+++.+.+...+.+.+.+.+..+.
T Consensus 223 l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~ 256 (330)
T 4e5n_A 223 LALVRPGALLVNPCRGSVVDEAAVLAALERGQLG 256 (330)
T ss_dssp HTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred HhhCCCCcEEEECCCCchhCHHHHHHHHHhCCcc
Confidence 6678899999999999888888888888776543
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.36 E-value=8e-13 Score=114.61 Aligned_cols=112 Identities=17% Similarity=0.225 Sum_probs=92.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+++.+...|++|++|||++ +.+...+.|+....+++++++++|+|++++|...+.+.++. .+.
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~--~~~ 237 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGREN-SKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIIT--VAD 237 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHH-HHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCC-CHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhC--HHH
Confidence 589999999999999999999999999999985 34555667888777999999999999999997666666552 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
.+.++++.++|+++.+.....+.+.+.+.+..+..
T Consensus 238 l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~g 272 (352)
T 3gg9_A 238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPGM 272 (352)
T ss_dssp HTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSE
T ss_pred HhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccE
Confidence 56778999999999998888788888887765543
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=9.9e-12 Score=117.29 Aligned_cols=186 Identities=18% Similarity=0.260 Sum_probs=125.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH---------------C-------CCcccCCHHHHHhhCCE
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA---------------H-------GATVGGSPAEVIKKCTI 59 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~---------------~-------g~~~~~~~~~~~~~~dv 59 (291)
||+|||+|.||..||..++.+|++|+++|++++.++...+ . .+...++.++ +.+||+
T Consensus 318 ~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~aDl 396 (742)
T 3zwc_A 318 SVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-LSTVDL 396 (742)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-GGSCSE
T ss_pred EEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-HhhCCE
Confidence 7999999999999999999999999999999887654322 0 1233445444 679999
Q ss_pred EEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecC-
Q 022834 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG- 138 (291)
Q Consensus 60 vii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g- 138 (291)
||.|||....++.-+| .++.+..++++++.+.|++.|.+ ++.+.. .+.-.|+....+.++.. -+++-++.+
T Consensus 397 VIEAV~E~l~iK~~vf--~~le~~~~~~aIlASNTSsl~i~--~ia~~~-~~p~r~ig~HFfnP~~~---m~LVEvi~g~ 468 (742)
T 3zwc_A 397 VVEAVFEDMNLKKKVF--AELSALCKPGAFLCTNTSALNVD--DIASST-DRPQLVIGTHFFSPAHV---MRLLEVIPSR 468 (742)
T ss_dssp EEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH--HHHTTS-SCGGGEEEEECCSSTTT---CCEEEEEECS
T ss_pred EEEeccccHHHHHHHH--HHHhhcCCCCceEEecCCcCChH--HHHhhc-CCccccccccccCCCCC---CceEEEecCC
Confidence 9999999998888666 67888888889888766665433 333322 12224555444443332 334444444
Q ss_pred --CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022834 139 --EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVL 205 (291)
Q Consensus 139 --~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~ 205 (291)
+++.++.+..+.+.+|+.++.+.+ ..+.....+ ....+.|++.+.+. |.+++++.+.+
T Consensus 469 ~Ts~e~~~~~~~~~~~lgK~pV~vkd-~pGFi~NRi-------~~~~~~ea~~l~~e-G~~~~~id~a~ 528 (742)
T 3zwc_A 469 YSSPTTIATVMSLSKKIGKIGVVVGN-CYGFVGNRM-------LAPYYNQGFFLLEE-GSKPEDVDGVL 528 (742)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEECCC-STTTTHHHH-------HHHHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCcccCC-CCCccHHHH-------hhHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 788999999999999999988876 223333222 23455666655543 55555544444
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=112.46 Aligned_cols=109 Identities=11% Similarity=0.120 Sum_probs=87.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcC-CcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR-TLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
++|||||+|.||..+++.+...|++|++||+ ++++ ....+.|+...++++++++++|+|++++|...+++.++. ++
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~--~~ 223 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN--KA 223 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBS--HH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcC--HH
Confidence 5899999999999999999999999999999 8766 344455777666899999999999999997665665551 23
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
..+.++++.++|+++.+.+...+.+.+.+.+..
T Consensus 224 ~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~ 256 (320)
T 1gdh_A 224 TIKSLPQGAIVVNTARGDLVDNELVVAALEAGR 256 (320)
T ss_dssp HHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTS
T ss_pred HHhhCCCCcEEEECCCCcccCHHHHHHHHHhCC
Confidence 456678899999999987766677777776643
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-12 Score=112.46 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=89.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|||||+|.||..+++.|...|++|++||+++++. .....|+....+++++++++|+|++++|...+++.++. ++.
T Consensus 169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~ 245 (347)
T 1mx3_A 169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN--DFT 245 (347)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS--HHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhH--HHH
Confidence 589999999999999999999999999999987643 22344776667899999999999999988666665552 234
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
.+.++++.++|+++.+.+...+.+.+.+.+.++
T Consensus 246 l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i 278 (347)
T 1mx3_A 246 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRI 278 (347)
T ss_dssp HTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSE
T ss_pred HhcCCCCCEEEECCCChHHhHHHHHHHHHhCCC
Confidence 456778999999999988888888888877644
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.8e-12 Score=106.43 Aligned_cols=109 Identities=9% Similarity=0.096 Sum_probs=88.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+++.+...|++|++|||++++ +...+.|+... +.+++++++|+|++++|...+.+.++. ++.
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDvV~l~~p~~~~t~~li~--~~~ 218 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLIN--EER 218 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCcccc-CHHHHHhhCCEEEEecCCChHHhhhcC--HHH
Confidence 58999999999999999999999999999998876 45556677654 788999999999999997666665551 134
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
.+.++++.++|+++.+.+.....+.+.+.+..+
T Consensus 219 l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i 251 (307)
T 1wwk_A 219 LKLMKKTAILINTSRGPVVDTNALVKALKEGWI 251 (307)
T ss_dssp HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSS
T ss_pred HhcCCCCeEEEECCCCcccCHHHHHHHHHhCCC
Confidence 566789999999999887777777777766543
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=112.10 Aligned_cols=106 Identities=21% Similarity=0.269 Sum_probs=85.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|||||+|.||..++..|...|++|++|||++++ +...+.|+... +.+++++++|+|++|+|....++.++. +++
T Consensus 147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~--~~~ 222 (333)
T 2d0i_A 147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIIN--EER 222 (333)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSBC--HHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChHHHHHhC--HHH
Confidence 58999999999999999999999999999999876 44444566554 788889999999999998766766662 134
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
.+.++++ +++++|.+.+...+.+.+.+.+.
T Consensus 223 ~~~mk~g-ilin~srg~~vd~~aL~~aL~~~ 252 (333)
T 2d0i_A 223 VKKLEGK-YLVNIGRGALVDEKAVTEAIKQG 252 (333)
T ss_dssp HHHTBTC-EEEECSCGGGBCHHHHHHHHHTT
T ss_pred HhhCCCC-EEEECCCCcccCHHHHHHHHHcC
Confidence 5567788 99999998877777777777654
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-12 Score=111.04 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=89.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+|+.+...|++|.+|||++...+.. .|....+++++++++||+|++++|...+...++. ++.
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~--~~~ 249 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE--EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLD--HDR 249 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH--TTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBC--HHH
T ss_pred CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh--cCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhC--HHH
Confidence 589999999999999999999999999999987554332 2777677999999999999999997666666552 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++.+.....+.+.+.+.+..+
T Consensus 250 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i 282 (345)
T 4g2n_A 250 IAKIPEGAVVINISRGDLINDDALIEALRSKHL 282 (345)
T ss_dssp HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred HhhCCCCcEEEECCCCchhCHHHHHHHHHhCCc
Confidence 566889999999999988888888888866543
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=9e-12 Score=114.13 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=88.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc-
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG- 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~- 79 (291)
|+|+|||+|.||..++..|...|++|++||+++. .+...+.|+... ++++++++||+|++|+|....+..++ .+
T Consensus 143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i---~~~ 217 (529)
T 1ygy_A 143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS-PARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLI---DKE 217 (529)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC-HHHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCB---CHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHh---CHH
Confidence 5899999999999999999999999999999874 344555577765 88899999999999999876777777 43
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
+.+.++++.+++|++.+.+.....+.+.+.+.
T Consensus 218 ~~~~~k~g~ilin~arg~iv~~~aL~~al~~g 249 (529)
T 1ygy_A 218 ALAKTKPGVIIVNAARGGLVDEAALADAITGG 249 (529)
T ss_dssp HHTTSCTTEEEEECSCTTSBCHHHHHHHHHTS
T ss_pred HHhCCCCCCEEEECCCCchhhHHHHHHHHHcC
Confidence 56678899999999999887777787777654
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-12 Score=111.80 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=88.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+++.|...|++|++|||+++..+.+ .+.....++++++++||+|++++|...+++.++. .+.
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~ 216 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--DQVYQLPALNKMLAQADVIVSVLPATRETHHLFT--ASR 216 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--SEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBC--TTT
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--hcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhH--HHH
Confidence 589999999999999999999999999999987543221 1112245788999999999999997666666662 355
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
...++++.++|+++.+.+...+.+.+.+.+..+.
T Consensus 217 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 250 (324)
T 3hg7_A 217 FEHCKPGAILFNVGRGNAINEGDLLTALRTGKLG 250 (324)
T ss_dssp TTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSS
T ss_pred HhcCCCCcEEEECCCchhhCHHHHHHHHHcCCce
Confidence 6678899999999999988888888888776553
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-12 Score=113.10 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=89.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|||||+|.||..+++.+...|++|++|||++.+.+...+.|+....+.+++++++|+|++++|...+++.++. ++.
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~--~~~ 269 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIN--DET 269 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBS--HHH
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhh--HHH
Confidence 589999999999999999999999999999987666655566877667899999999999999997656666551 244
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++.+.+...+.+.+.+.+.
T Consensus 270 l~~mk~gailIN~aRG~~vde~aL~~aL~~g 300 (393)
T 2nac_A 270 LKLFKRGAYIVNTARGKLCDRDAVARALESG 300 (393)
T ss_dssp HTTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred HhhCCCCCEEEECCCchHhhHHHHHHHHHcC
Confidence 5667889999999999877777788877654
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-12 Score=112.67 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=91.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCc-EEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
++|||||+|.||..+++.|...|++ |++|||++.+.+...+.|+....+++++++++|+|++++|....++.++. ++
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~ 242 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLIN--KE 242 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBC--HH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhC--HH
Confidence 5899999999999999999999997 99999988776666667877667899999999999999998766666551 23
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
..+.++++.++|+++.+.+...+.+.+.+.+..+
T Consensus 243 ~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i 276 (364)
T 2j6i_A 243 LLSKFKKGAWLVNTARGAICVAEDVAAALESGQL 276 (364)
T ss_dssp HHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred HHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCC
Confidence 4566788999999999988777888888776543
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-12 Score=109.89 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=87.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+++.+...|++|++|||++++. ...+.|+.. .+++++++++|+|++++|...+++.++. ++.
T Consensus 143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~--~~~ 218 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVSKDAKPIID--YPQ 218 (313)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBC--HHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCChHHHHhhC--HHH
Confidence 589999999999999999999999999999988764 355667765 4888999999999999997665555541 134
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
.+.++++.++|+++.+.+...+.+.+.+.+..
T Consensus 219 l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~ 250 (313)
T 2ekl_A 219 FELMKDNVIIVNTSRAVAVNGKALLDYIKKGK 250 (313)
T ss_dssp HHHSCTTEEEEESSCGGGBCHHHHHHHHHTTC
T ss_pred HhcCCCCCEEEECCCCcccCHHHHHHHHHcCC
Confidence 45678899999999998877788888776643
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.1e-12 Score=108.92 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=86.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|||||+|.||..+++.|...|++|++|||+++ +. +.....++++++++||+|++++|...+++.++. ++.
T Consensus 125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~--~~~ 196 (303)
T 1qp8_A 125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKHTRGLVK--YQH 196 (303)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC--HHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhC--HHH
Confidence 5899999999999999999999999999999876 11 444456888999999999999998767776661 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
.+.++++.++|+++.+.+...+.+.+.+.+..+
T Consensus 197 l~~mk~gailin~srg~~vd~~aL~~aL~~g~i 229 (303)
T 1qp8_A 197 LALMAEDAVFVNVGRAEVLDRDGVLRILKERPQ 229 (303)
T ss_dssp HTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTT
T ss_pred HhhCCCCCEEEECCCCcccCHHHHHHHHHhCCc
Confidence 667889999999999987777778887776544
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-12 Score=112.45 Aligned_cols=117 Identities=12% Similarity=0.120 Sum_probs=90.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+|+.+...|++|++|||+++..+.+.. .....++++++++||+|++++|...+++.++. .+.
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~--~~~ 213 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPTTHHLFS--TEL 213 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGGGTTCBS--HHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchHHHHhcC--HHH
Confidence 58999999999999999999999999999998765432211 12235788999999999999997666666652 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (291)
...++++.++|+++.+.....+.+.+.+.+..+......++
T Consensus 214 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~ 254 (324)
T 3evt_A 214 FQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVT 254 (324)
T ss_dssp HHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSC
T ss_pred HhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCC
Confidence 56688999999999998888888888887765544333333
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.1e-12 Score=108.39 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=88.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+++.+...|++|++|||++++ +...+.|+.. .+++++++++|+|++++|...+++.++. ++.
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~ 241 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLN--DNT 241 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBC--HHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHHHHhhC--HHH
Confidence 58999999999999999999999999999998765 3455667654 4889999999999999998766666651 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
.+.++++.++|+++.+.+...+.+.+.+.+..
T Consensus 242 l~~mk~gailIN~arg~vvd~~aL~~aL~~g~ 273 (335)
T 2g76_A 242 FAQCKKGVRVVNCARGGIVDEGALLRALQSGQ 273 (335)
T ss_dssp HTTSCTTEEEEECSCTTSBCHHHHHHHHHHTS
T ss_pred HhhCCCCcEEEECCCccccCHHHHHHHHHhCC
Confidence 56788999999999998777777877776643
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=105.93 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=88.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+|+.+...|++|++||++. +.+...+.|+.. .+++++++++|+|++++|...+.+.++. .+.
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~--~~~ 252 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWL-PRSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFLG--AEA 252 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSS-CHHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC---CCC--HHH
T ss_pred CEEEEecCCcccHHHHHhhhhCCCEEEEECCCC-CHHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhcC--HHH
Confidence 489999999999999999999999999999985 444455667764 4899999999999999998766766662 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
...++++.++|+++.+.....+.+.+.+.+..+.
T Consensus 253 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 286 (365)
T 4hy3_A 253 FSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV 286 (365)
T ss_dssp HHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE
T ss_pred HhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce
Confidence 5678899999999999888888888888765443
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-12 Score=110.82 Aligned_cols=109 Identities=17% Similarity=0.336 Sum_probs=85.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|||||+|.||..+++.+...|++|++|||+++..+.+... ....++++++++||+|++++|...+++.++. ++.
T Consensus 140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~t~~li~--~~~ 215 (315)
T 3pp8_A 140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQTVGIIN--SEL 215 (315)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGGGTTCBS--HHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchhhhhhcc--HHH
Confidence 589999999999999999999999999999987654221100 0114778899999999999997666666652 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++.+.....+.+.+.+.+..+
T Consensus 216 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i 248 (315)
T 3pp8_A 216 LDQLPDGAYVLNLARGVHVQEADLLAALDSGKL 248 (315)
T ss_dssp HTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred HhhCCCCCEEEECCCChhhhHHHHHHHHHhCCc
Confidence 566889999999999988888888888866543
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=105.80 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=82.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC-c
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG-G 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~-~ 79 (291)
++|||||+|.||..+++.+...|++|++|||++++.. + ...+.+++++++|+|++++|.......++ . +
T Consensus 145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~t~~li---~~~ 214 (311)
T 2cuk_A 145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPETHRLL---NRE 214 (311)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTTTTTCB---CHH
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChHHHhhc---CHH
Confidence 5899999999999999999999999999999887653 2 24588899999999999998876666665 3 3
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHH
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAIT 109 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~ 109 (291)
....++++.++|+++.+.+...+.+.+.+.
T Consensus 215 ~l~~mk~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 215 RLFAMKRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp HHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred HHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence 455678999999999988777777877776
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-11 Score=106.59 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=86.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+++.+...|++|++|||+++.. .+.+... .++++++++||+|++++|...+...++. .+.
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~--~~~ 222 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLTY-TDFDTVLKEADIVSLHTPLFPSTENMIG--EKQ 222 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBC--HHH
T ss_pred CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhccccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhh--HHH
Confidence 489999999999999999999999999999987642 1223333 3899999999999999997666665552 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
...++++.++|+++.+.....+.+.+.+.+..+.
T Consensus 223 l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 256 (343)
T 2yq5_A 223 LKEMKKSAYLINCARGELVDTGALIKALQDGEIA 256 (343)
T ss_dssp HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred HhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCc
Confidence 5667899999999999888888888888776443
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=106.25 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=87.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+++.+...|++|++||+++++. +.+ .....++.+++++++|+|++++|...+++.++. ++.
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~--~~~ 221 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMIN--DES 221 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBS--HHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHh--HHH
Confidence 589999999999999999999999999999987654 222 345555889999999999999997666666551 134
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++.+.+...+.+.+.+.+..+
T Consensus 222 l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i 254 (333)
T 1j4a_A 222 IAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKI 254 (333)
T ss_dssp HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred HhhCCCCcEEEECCCCcccCHHHHHHHHHhCCc
Confidence 466789999999999988888888888876543
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-11 Score=107.26 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=85.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHH----HHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA----ALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~----~~~v~~~ 76 (291)
++|||||+|.||..+++.+...|++|++||++.+... ......++++++++||+|++++|...+ ...++.
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~- 193 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-----DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLAD- 193 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-----CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBC-
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-----cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcC-
Confidence 5899999999999999999999999999998543221 223456899999999999999986555 555541
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
.+....++++.++|+++.+.+...+.+.+.+.+..+...
T Consensus 194 -~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA 232 (381)
T 3oet_A 194 -ETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSV 232 (381)
T ss_dssp -HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEE
T ss_pred -HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEE
Confidence 245566789999999999988888888888877655433
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-11 Score=107.20 Aligned_cols=107 Identities=11% Similarity=0.125 Sum_probs=83.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+|+.+...|++|++||+++.... .+.....++++++++||+|++++|...+.+.++. ++.
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~----~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~--~~~ 230 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY----GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLIT--EAK 230 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB----TTBEECSSHHHHHHHCSEEEECCCC-----CCBC--HHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc----cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcC--HHH
Confidence 4899999999999999999999999999999754321 2344567899999999999999998777776652 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|++|.+.+...+.+.+.+.+..+
T Consensus 231 l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i 263 (416)
T 3k5p_A 231 LRKMKKGAFLINNARGSDVDLEALAKVLQEGHL 263 (416)
T ss_dssp HHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred HhhCCCCcEEEECCCChhhhHHHHHHHHHcCCc
Confidence 566889999999999988888888888866543
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-11 Score=107.50 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=86.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+|+.+...|++|++|||++... ..++....++++++++||+|++++|...+++.++. ++.
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~ 219 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMG--AKE 219 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBC--HHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhh--HHH
Confidence 589999999999999999999999999999976532 12355566899999999999999998777766662 235
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|++|.+.+...+.+.+.+.+.
T Consensus 220 l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 250 (404)
T 1sc6_A 220 ISLMKPGSLLINASRGTVVDIPALADALASK 250 (404)
T ss_dssp HHHSCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred HhhcCCCeEEEECCCChHHhHHHHHHHHHcC
Confidence 5678899999999999887778888877654
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=99.16 E-value=6.7e-11 Score=88.80 Aligned_cols=103 Identities=21% Similarity=0.272 Sum_probs=81.1
Q ss_pred eEEEEec----ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~----G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
+|+|||+ |.||..++++|.+.||+|+.++++.+.. .|.+++.|+.|+.+.+|++++++| +..+.+++
T Consensus 16 ~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~--- 86 (138)
T 1y81_A 16 KIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA--- 86 (138)
T ss_dssp EEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH---
T ss_pred eEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHH---
Confidence 7999999 9999999999999999977777765433 488888999999889999999997 57788888
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
+++.. ...+.++++.++. .+++.+...+.|+.+++.
T Consensus 87 ~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~igp 122 (138)
T 1y81_A 87 KEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSFG 122 (138)
T ss_dssp HHHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEECS
T ss_pred HHHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEcC
Confidence 55554 3345677766654 366667777789988863
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-11 Score=101.69 Aligned_cols=109 Identities=25% Similarity=0.311 Sum_probs=80.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+|+|||+|.||.+++..|.+.|++|++++|++++++.+.+. |+...++..+.++++|+||.|+|.+.. ..+. ..
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~-~~~~---~~ 205 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLK-DEDP---EI 205 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSS-TTCC---CS
T ss_pred CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCC-CCCC---CC
Confidence 589999999999999999999999999999999988887654 655555777888899999999987542 1111 11
Q ss_pred c-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 80 V-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 80 l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
+ ...++++++++|++. .. ..+.+...+.|+.+++
T Consensus 206 i~~~~l~~g~~viDv~~-~~---t~ll~~a~~~g~~~v~ 240 (275)
T 2hk9_A 206 FNYDLIKKDHVVVDIIY-KE---TKLLKKAKEKGAKLLD 240 (275)
T ss_dssp SCGGGCCTTSEEEESSS-SC---CHHHHHHHHTTCEEEC
T ss_pred CCHHHcCCCCEEEEcCC-Ch---HHHHHHHHHCcCEEEC
Confidence 2 245678899999988 22 2233344456666654
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-11 Score=102.93 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=85.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+++.+...|++|++|||++++. + +.... ..+++++++++|+|++++|...+++.++. ++.
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~P~~~~t~~li~--~~~ 219 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIIN--EAA 219 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBC--HHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhccc-cCCHHHHHhcCCEEEEcCCCchhHHHHhC--HHH
Confidence 589999999999999999999999999999987653 1 22333 34888999999999999998776666552 235
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++.+.+...+.+.+.+.+..+
T Consensus 220 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i 252 (333)
T 1dxy_A 220 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 252 (333)
T ss_dssp HHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred HhhCCCCcEEEECCCCcccCHHHHHHHHHhCCc
Confidence 566889999999999988888888887776543
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-11 Score=102.96 Aligned_cols=107 Identities=20% Similarity=0.112 Sum_probs=85.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+++.+...|++|++|||++++. + +.... ..+++++++++|+|++++|.....+.++. ++.
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~--~~~ 220 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDYCT-QVSLDEVLEKSDIITIHAPYIKENGAVVT--RDF 220 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTTCE-ECCHHHHHHHCSEEEECCCCCTTTCCSBC--HHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhccc-cCCHHHHHhhCCEEEEecCCchHHHHHhC--HHH
Confidence 589999999999999999999999999999987654 1 22333 34888999999999999997666655551 234
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
.+.++++.++|+++.+.+...+.+.+.+.+..+
T Consensus 221 l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i 253 (331)
T 1xdw_A 221 LKKMKDGAILVNCARGQLVDTEAVIEAVESGKL 253 (331)
T ss_dssp HHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred HhhCCCCcEEEECCCcccccHHHHHHHHHhCCc
Confidence 566789999999999988888888888876544
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-11 Score=104.13 Aligned_cols=106 Identities=14% Similarity=0.102 Sum_probs=84.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHH----HHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA----ALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~----~~~v~~~ 76 (291)
++|||||+|.||..+++.|...|++|++||++++.. +.+.. ..++++++++||+|++++|...+ +..++.
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~- 190 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPDGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLD- 190 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STTSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBC-
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccCcc-cCCHHHHHHhCCEEEEeccCccccccchhhhcC-
Confidence 589999999999999999999999999999865432 23433 45889999999999999987655 555541
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
++....++++.++|+++.+.+...+.+.+.+.+..+
T Consensus 191 -~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i 226 (380)
T 2o4c_A 191 -EPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGAD 226 (380)
T ss_dssp -HHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCC
T ss_pred -HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCC
Confidence 245567889999999999988787888888876543
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=97.16 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=79.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHH--HHHHHhccC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAA--ALSVVFDKG 78 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~--~~~v~~~~~ 78 (291)
+|+|||+|.||.+++..|.+.|++|++++|++++++.+.+. +.. ..+..++ +++|+|++|+|.+.+ +...+ .
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l---~ 192 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASPL---P 192 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCSS---C
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCCC---C
Confidence 68999999999999999999999999999999888877654 544 4577777 899999999987532 11222 1
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
.+.++++++++|++.....+ ++.+...+.++.+++
T Consensus 193 --~~~l~~g~~viD~~~~p~~t--~l~~~a~~~g~~~v~ 227 (263)
T 2d5c_A 193 --AELFPEEGAAVDLVYRPLWT--RFLREAKAKGLKVQT 227 (263)
T ss_dssp --GGGSCSSSEEEESCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred --HHHcCCCCEEEEeecCCccc--HHHHHHHHCcCEEEC
Confidence 34567889999988763322 355556666776653
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-09 Score=82.04 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=73.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCccc----CCHHHH----HhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVG----GSPAEV----IKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~----~~~~~~----~~~~dvvii~vp~~~~~~ 71 (291)
|+|.|+|+|.+|..++..|.+.|++|+++++++++.+.+.+. +.... .+.+.+ ++++|+||+|+|.+....
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~ 84 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNL 84 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHHH
Confidence 799999999999999999999999999999999988877753 54321 123222 457999999998764333
Q ss_pred HHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.+. ...+.+.++++|+..++. ... +.+.+.|..++..|
T Consensus 85 ~~~----~~~~~~~~~~ii~~~~~~--~~~----~~l~~~g~~~v~~p 122 (140)
T 1lss_A 85 MSS----LLAKSYGINKTIARISEI--EYK----DVFERLGVDVVVSP 122 (140)
T ss_dssp HHH----HHHHHTTCCCEEEECSST--THH----HHHHHTTCSEEECH
T ss_pred HHH----HHHHHcCCCEEEEEecCH--hHH----HHHHHcCCCEEECH
Confidence 232 333445556666654333 222 23445566666555
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.8e-11 Score=88.79 Aligned_cols=87 Identities=20% Similarity=0.318 Sum_probs=69.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCc--ccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~--~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
++|+|||+|.||..++..|.+.|++|++|+|++++.+.+.+. +.. ...+..+.++++|+||.|+|.+.. ++
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~---~~--- 95 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTP---IV--- 95 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSC---SB---
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCc---Ee---
Confidence 589999999999999999999999999999999998887654 443 456788888999999999987521 22
Q ss_pred CccccccCCCcEEEEcCC
Q 022834 78 GGVLEQICPGKGYIDMST 95 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~ 95 (291)
. ...++++.++++++.
T Consensus 96 ~--~~~l~~g~~vid~~~ 111 (144)
T 3oj0_A 96 E--ERSLMPGKLFIDLGN 111 (144)
T ss_dssp C--GGGCCTTCEEEECCS
T ss_pred e--HHHcCCCCEEEEccC
Confidence 1 145667889999875
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.7e-10 Score=96.03 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=69.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHHC----------CCcc-cCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH----------GATV-GGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~----------g~~~-~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..++..|+++| ++|++||+++++++.+... .... ..+. +.++++|+||+|+|.+
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~ 80 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI 80 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence 69999999999999999999999 7999999999888765531 1333 3556 6678999999999875
Q ss_pred HH-------------------HHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 AA-------------------ALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ~~-------------------~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.. +++++ +.+.+.. ++..++..|+.
T Consensus 81 ~~~~~~~g~~r~~l~~~n~~i~~~i~---~~i~~~~-~~~~ii~~tNp 124 (309)
T 1hyh_A 81 KLQQDNPTGDRFAELKFTSSMVQSVG---TNLKESG-FHGVLVVISNP 124 (309)
T ss_dssp GGTC-------CTTHHHHHHHHHHHH---HHHHHTT-CCSEEEECSSS
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCcEEEEEcCc
Confidence 53 45666 5565544 56677766664
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-09 Score=86.24 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=75.8
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHCCCccc----CCHH---HH--HhhCCEEEEecCCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVG----GSPA---EV--IKKCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~---~~--~~~~dvvii~vp~~~~~ 70 (291)
|+|.|+|+|.||..++..|.+. |++|+++|+++++.+.+.+.|..+. .+.+ ++ ++++|+||+|+|++...
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~ 119 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQGN 119 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHHH
Confidence 4899999999999999999999 9999999999999998888776542 2222 22 45689999999887665
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
..++ . ....+.++..++..+ ..+...+ .+.+.|..++..|
T Consensus 120 ~~~~---~-~~~~~~~~~~ii~~~-~~~~~~~----~l~~~G~~~vi~p 159 (183)
T 3c85_A 120 QTAL---E-QLQRRNYKGQIAAIA-EYPDQLE----GLLESGVDAAFNI 159 (183)
T ss_dssp HHHH---H-HHHHTTCCSEEEEEE-SSHHHHH----HHHHHTCSEEEEH
T ss_pred HHHH---H-HHHHHCCCCEEEEEE-CCHHHHH----HHHHcCCCEEEch
Confidence 5555 2 223333344444333 3344433 3445577666555
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-10 Score=96.06 Aligned_cols=109 Identities=23% Similarity=0.257 Sum_probs=81.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc--cCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--GGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~--~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
++|+|||+|.||..++..+...|++|++|||++++.+.+.+.|... ..+.+++++++|+|++++|... +. +
T Consensus 158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~-i~------~ 230 (300)
T 2rir_A 158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMI-LN------Q 230 (300)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCC-BC------H
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhh-hC------H
Confidence 5899999999999999999999999999999988877766667653 2467788899999999998621 11 1
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.....++++.++||++.+...+ . + +.....|+.++++|
T Consensus 231 ~~~~~mk~g~~lin~a~g~~~~-~-~-~~a~~~G~~~i~~p 268 (300)
T 2rir_A 231 TVLSSMTPKTLILDLASRPGGT-D-F-KYAEKQGIKALLAP 268 (300)
T ss_dssp HHHTTSCTTCEEEECSSTTCSB-C-H-HHHHHHTCEEEECC
T ss_pred HHHHhCCCCCEEEEEeCCCCCc-C-H-HHHHHCCCEEEECC
Confidence 2234567889999998763322 1 2 33445578787777
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=9.7e-11 Score=101.62 Aligned_cols=112 Identities=15% Similarity=0.210 Sum_probs=85.1
Q ss_pred CeEEEEecChhhHHHHHHHHh--CCCcEEEEcCCcchhHHHHHC-----C--CcccCCHHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~~dvvii~vp~~~~~~ 71 (291)
++|+|||+|.||..++..|.. ...+|.+|||++++++.+.+. | +..+++.+++++++|+|++|+|... ..
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~-~~ 208 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA-YA 208 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-EE
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-CC
Confidence 379999999999999998764 346899999999999988764 5 3456788999999999999998752 23
Q ss_pred HHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.++ . ...+++|++|+++++..|. .+++...+..++..|+|..
T Consensus 209 pvl---~--~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~~ 250 (350)
T 1x7d_A 209 TII---T--PDMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEYE 250 (350)
T ss_dssp EEE---C--GGGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESSH
T ss_pred cee---c--HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECCH
Confidence 344 2 2457789999999988776 4555555555566677764
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-09 Score=92.11 Aligned_cols=109 Identities=14% Similarity=0.150 Sum_probs=83.4
Q ss_pred CeEEEEecChhhHH-HHHHHHh-CCCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLR-NGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~-~g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||||||+|.||.. ++..|.+ .++++. ++|+++++++.+.+. |+..+++.+++++++|+|++|+|+..+.+-+.
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~-- 84 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEIIK-- 84 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHHH--
T ss_pred CcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHH--
Confidence 48999999999996 8888887 467776 789999999888765 77778899999989999999999887766554
Q ss_pred cCccccccCCCcEE-EE-cCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 77 KGGVLEQICPGKGY-ID-MSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 77 ~~~l~~~l~~~~~v-v~-~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
. .+..|+.| +. -.+..+...+++.+...+.++.+.
T Consensus 85 -~----al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~ 121 (308)
T 3uuw_A 85 -I----LLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLM 121 (308)
T ss_dssp -H----HHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEE
T ss_pred -H----HHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2 23345444 43 345567788888887777776554
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-10 Score=86.80 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=79.3
Q ss_pred eEEEEec----ChhhHHHHHHHHhCCCcEEEEcCCc--chhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTL--SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~----G~mG~~la~~l~~~g~~V~~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
+|+|||+ |.||..++++|.+.||+|+.++++. +.. .|.+++.|+.++...+|++++|+|. ..+.+++
T Consensus 15 ~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp~-~~v~~v~- 87 (145)
T 2duw_A 15 TIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRNS-EAAWGVA- 87 (145)
T ss_dssp CEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSCS-THHHHHH-
T ss_pred EEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHH-
Confidence 6999999 8999999999999999977777765 332 4888888999988889999999985 6778887
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
+++.+ ...+.++++.++. .+++.+...+.|+.++.
T Consensus 88 --~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 88 --QEAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVM 122 (145)
T ss_dssp --HHHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEEC
T ss_pred --HHHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEc
Confidence 55554 3345677765544 46677777788888884
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.1e-09 Score=78.37 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=74.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc----CCHHHH----HhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~~dvvii~vp~~~~~~~ 72 (291)
++|.|+|+|.+|..++..|.+.|++|+++|+++++++.+.+.|..+. .+.+.+ +.++|++|+++|++.....
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~ 87 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGE 87 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHH
Confidence 37999999999999999999999999999999999999988876542 122221 3579999999988765554
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
++ .. ...+.++..++-..+ .+... +.+.+.|+..+-.|
T Consensus 88 ~~---~~-a~~~~~~~~iiar~~-~~~~~----~~l~~~G~d~vi~p 125 (140)
T 3fwz_A 88 IV---AS-ARAKNPDIEIIARAH-YDDEV----AYITERGANQVVMG 125 (140)
T ss_dssp HH---HH-HHHHCSSSEEEEEES-SHHHH----HHHHHTTCSEEEEH
T ss_pred HH---HH-HHHHCCCCeEEEEEC-CHHHH----HHHHHCCCCEEECc
Confidence 44 22 222323333443333 34333 33445677665444
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=6.2e-10 Score=95.65 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=67.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHC---------CCcc-cCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH---------GATV-GGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~---------g~~~-~~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+|||+|.||.+++..|+.+|+ +|+++|+++++++.+... ...+ ..+ .+.++++|+||+|+|.+.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence 899999999999999999999999 999999998877765421 1122 134 456789999999997533
Q ss_pred ---------------HHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 69 ---------------AALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 69 ---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
.+++++ +.+.+.. ++..++..||..
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~---~~i~~~~-~~~~ii~~tNp~ 119 (319)
T 1a5z_A 80 KPGETRLQLLGRNARVMKEIA---RNVSKYA-PDSIVIVVTNPV 119 (319)
T ss_dssp CSSCCHHHHHHHHHHHHHHHH---HHHHHHC-TTCEEEECSSSH
T ss_pred CCCCCHHHHHHHHHHHHHHHH---HHHHhhC-CCeEEEEeCCcH
Confidence 145555 5565554 677777666653
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-09 Score=93.26 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=79.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc--CCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
++|+|||+|.||..++..+...|.+|++|||++++.+.+.+.|.... .+.+++++++|+|++++|...--+
T Consensus 156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~------- 228 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVVTA------- 228 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCCBCH-------
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHHhCH-------
Confidence 47999999999999999999999999999999887776666676543 467788899999999998621111
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
+....++++.++|+++.+.... . + +.....|+.++..|
T Consensus 229 ~~l~~mk~~~~lin~ar~~~~~-~-~-~~a~~~Gv~~~~~~ 266 (293)
T 3d4o_A 229 NVLAEMPSHTFVIDLASKPGGT-D-F-RYAEKRGIKALLVP 266 (293)
T ss_dssp HHHHHSCTTCEEEECSSTTCSB-C-H-HHHHHHTCEEEECC
T ss_pred HHHHhcCCCCEEEEecCCCCCC-C-H-HHHHHCCCEEEECC
Confidence 1233467889999998653222 1 2 33344577666555
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.97 E-value=4e-09 Score=91.16 Aligned_cols=109 Identities=13% Similarity=0.155 Sum_probs=83.4
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|.||..++..|.+. ++++. ++|+++++++.+.+. |+. +++.+++++ ++|+|++|+|+..+.+.+.
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~- 81 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLIE- 81 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHH-
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHH-
Confidence 3899999999999999999885 67766 789999998887754 777 889999987 7999999999887766555
Q ss_pred ccCccccccCCCcEE-EEc-CCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 76 DKGGVLEQICPGKGY-IDM-STVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 76 ~~~~l~~~l~~~~~v-v~~-s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
. .+..|+.| +.- .+..+...+++.+...+.++.+..
T Consensus 82 --~----al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (331)
T 4hkt_A 82 --R----FARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMV 119 (331)
T ss_dssp --H----HHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred --H----HHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 2 23344444 432 245677888888877777766653
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.95 E-value=6e-09 Score=90.00 Aligned_cols=112 Identities=12% Similarity=0.087 Sum_probs=82.5
Q ss_pred CeEEEEecChhhHHH-HHHHHhCCCcEE-EEcCCcchhHHHHHC-CCc-ccCCHHHHHh--hCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAI-SMNLLRNGFKVT-VWNRTLSKCDELVAH-GAT-VGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~l-a~~l~~~g~~V~-~~~r~~~~~~~l~~~-g~~-~~~~~~~~~~--~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+|.||..+ +..|.+.++++. ++|+++++++.+.+. |.. .+++.+++++ ++|+|++|+|...+.+-+.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 80 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL 80 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHH
Confidence 799999999999998 888877778865 789999988877654 664 6788999886 4999999998876655444
Q ss_pred hccCccccccCCCcEE-EEc-CCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 75 FDKGGVLEQICPGKGY-IDM-STVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~v-v~~-s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
..+..|+.| +.- .+......+++.+...+.++.+....
T Consensus 81 -------~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~ 120 (332)
T 2glx_A 81 -------AAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNH 120 (332)
T ss_dssp -------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred -------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEee
Confidence 223456544 432 34467777888887777777665443
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-09 Score=93.54 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=71.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHH----H------CC--CcccCCHHHHHhhCCEEEEec---
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----A------HG--ATVGGSPAEVIKKCTITIGML--- 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~------~g--~~~~~~~~~~~~~~dvvii~v--- 64 (291)
|||+|||+|.||..++..|+.+|+ +|++||+++++++... . .. +..+.+. +.+++||+||+|+
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~p 83 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASIP 83 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 589999999999999999999998 9999999988776531 1 11 2233566 6778999999999
Q ss_pred -----------CCHH-HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHH
Q 022834 65 -----------ADPA-AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKI 104 (291)
Q Consensus 65 -----------p~~~-~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~ 104 (291)
+... ..++++ +++.+.. ++.+++..||........+
T Consensus 84 ~~~g~~r~d~~~~~~~i~~~i~---~~i~~~~-~~~iii~~sNp~~~~~~~~ 131 (317)
T 2ewd_A 84 GRPKDDRSELLFGNARILDSVA---EGVKKYC-PNAFVICITNPLDVMVSHF 131 (317)
T ss_dssp SCCSSCGGGGHHHHHHHHHHHH---HHHHHHC-TTSEEEECCSSHHHHHHHH
T ss_pred CCCCCcHHHHHHhhHHHHHHHH---HHHHHHC-CCcEEEEeCChHHHHHHHH
Confidence 3222 345666 5666664 6888888887543333333
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.1e-09 Score=91.90 Aligned_cols=109 Identities=13% Similarity=0.138 Sum_probs=83.1
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHh--hCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+|.||..++..|.+. +++++ ++|+++++++.+.+. |+..+++.+++++ ++|+|++|+|+..+.+.+.
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~ 93 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPTQSI 93 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHHHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHHHHH
Confidence 4899999999999999999986 67755 889999998887754 8888899999987 6899999999877766554
Q ss_pred hccCccccccCCCcEEEE-c-CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 75 FDKGGVLEQICPGKGYID-M-STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~-~-s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
. .+..|+.|+. - -.......+++.+...+.+..+.
T Consensus 94 ---~----al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~ 130 (354)
T 3q2i_A 94 ---E----CSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLF 130 (354)
T ss_dssp ---H----HHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred ---H----HHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 2 2334554443 1 23456777888877777776654
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.7e-09 Score=91.58 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=83.3
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHH--hhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVI--KKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~--~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|.||..++..|.+. ++++. ++|+++++++.+.+. |+..+++.++++ .++|+|++|+|+..+.+.+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~- 84 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVIE- 84 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHHH-
T ss_pred ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHHH-
Confidence 3899999999999999999886 77855 789999998887655 888888999998 45899999999987766555
Q ss_pred ccCccccccCCCc-EEEEcC-CCCHHHHHHHHHHHHhcCCcEE
Q 022834 76 DKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 76 ~~~~l~~~l~~~~-~vv~~s-~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
. .+..|+ +++.-- +..+...+++.+...+.++.+.
T Consensus 85 --~----al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~ 121 (354)
T 3db2_A 85 --Q----CARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFL 121 (354)
T ss_dssp --H----HHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEE
T ss_pred --H----HHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 2 233454 444422 4567778888887777776654
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.5e-09 Score=90.74 Aligned_cols=109 Identities=15% Similarity=0.212 Sum_probs=82.9
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|.||..++..|.+. +++++ ++|+++++++.+.+. |...+.+.+++++ ++|+|++|+|...+.+-+.
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~- 83 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLIT- 83 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHH-
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHH-
Confidence 3899999999999999999886 67766 789999998887765 7888899999988 7899999999887766555
Q ss_pred ccCccccccCCCc-EEEEcC-CCCHHHHHHHHHHHHhcCCcEE
Q 022834 76 DKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 76 ~~~~l~~~l~~~~-~vv~~s-~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
. .+..|+ +++.-- +..+...+++.+...+.++.+.
T Consensus 84 --~----al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~ 120 (344)
T 3euw_A 84 --R----AVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVM 120 (344)
T ss_dssp --H----HHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEE
T ss_pred --H----HHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEE
Confidence 2 223444 444322 4466777888777766666554
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=87.79 Aligned_cols=110 Identities=13% Similarity=0.169 Sum_probs=81.7
Q ss_pred CeEEEEecChhhHH-HHHHHHh-CCCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLR-NGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~-~g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||.. ++..|.+ .++++. ++|+++++++.+.+. |+..+++.+++..++|+|++|+|...+.+.+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~-- 83 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS-- 83 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHHH--
Confidence 47999999999996 8888876 467766 889999998887765 77777788777567999999999877765554
Q ss_pred cCccccccCCCc-EEEE-cCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 77 KGGVLEQICPGK-GYID-MSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 77 ~~~l~~~l~~~~-~vv~-~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
. .+..|+ +++. ..+..+...+++.+...+.++.+..
T Consensus 84 -~----al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~ 121 (319)
T 1tlt_A 84 -T----LLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMV 121 (319)
T ss_dssp -H----HHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred -H----HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 1 234555 4554 2345677788888877777776653
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.2e-09 Score=89.48 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=65.8
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHH---HCC---------CcccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELV---AHG---------ATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~---~~g---------~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|.||..++..|+.+ |++|++||+++++++.+. .+. +..+.+.++ ++++|+||+|+|.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence 8999999999999999999985 799999999988877543 111 223356666 8899999999975
Q ss_pred HH---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 67 PA---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 67 ~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+. .++++. +.+.+.. ++..++..|+.
T Consensus 80 p~~~g~~r~dl~~~n~~i~~~i~---~~i~~~~-~~~~viv~tNP 120 (310)
T 1guz_A 80 PRKPGMTREDLLMKNAGIVKEVT---DNIMKHS-KNPIIIVVSNP 120 (310)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHH---HHHHHHC-SSCEEEECCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH---HHHHHhC-CCcEEEEEcCc
Confidence 41 124444 4555553 66666666553
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=89.46 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=82.1
Q ss_pred eEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~~~ 77 (291)
||+|||+|.||..++..|.+. ++++. ++|+++++++.....|+..+++.++++. +.|+|++|+|+..+.+-+.
T Consensus 7 ~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~--- 83 (359)
T 3e18_A 7 QLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELAI--- 83 (359)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHH---
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH---
Confidence 799999999999999999876 67765 7799999887666668888899999987 6899999999987766555
Q ss_pred CccccccCCCcEE-EEc-CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 78 GGVLEQICPGKGY-IDM-STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 78 ~~l~~~l~~~~~v-v~~-s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+..|+.| +.- .+......+++.+...+.++.+.
T Consensus 84 ----~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (359)
T 3e18_A 84 ----SALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFM 120 (359)
T ss_dssp ----HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred ----HHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 223355544 431 24456777888777777676554
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.1e-09 Score=88.86 Aligned_cols=110 Identities=14% Similarity=0.153 Sum_probs=82.7
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHC-CC-cccCCHHHHHh--hCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+|.||..++..|.+. ++++. ++|+++++++.+.+. |+ ..+++.++++. ++|+|++|+|+..+.+-+.
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~ 85 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAAK 85 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHHH
T ss_pred EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHH
Confidence 3799999999999999999984 66766 789999998887754 66 57889999987 7899999999887766555
Q ss_pred hccCccccccCCCc-EEEEcC-CCCHHHHHHHHHHHHhcCCcEEE
Q 022834 75 FDKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 75 ~~~~~l~~~l~~~~-~vv~~s-~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
. .+..|+ +++.-- +..+...+++.+...+.++.+..
T Consensus 86 ---~----al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v 123 (330)
T 3e9m_A 86 ---L----ALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLME 123 (330)
T ss_dssp ---H----HHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred ---H----HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 2 233444 444422 44667778888777777766543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.9e-09 Score=76.09 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=70.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHCCCccc-------CCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVG-------GSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
|+|.|+|+|.||..++..|.+.| ++|++++|++++.+.+...+.... .+..+.++++|+||.|+|... ...
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~~~ 84 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-TPI 84 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-HHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-hHH
Confidence 48999999999999999999999 999999999999888875554321 123345678999999996533 344
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRA 107 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~ 107 (291)
+. +. ....+..+++++.. +...+.+.+.
T Consensus 85 ~~---~~---~~~~g~~~~~~~~~-~~~~~~~~~~ 112 (118)
T 3ic5_A 85 IA---KA---AKAAGAHYFDLTED-VAATNAVRAL 112 (118)
T ss_dssp HH---HH---HHHTTCEEECCCSC-HHHHHHHHHH
T ss_pred HH---HH---HHHhCCCEEEecCc-HHHHHHHHHH
Confidence 44 22 23356677777654 4455655544
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.2e-09 Score=89.56 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=82.8
Q ss_pred CeEEEEecChhhH-HHHHHHHhC-CCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHh--hCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~ 74 (291)
|||||||+|.||. .++..|.+. +++|+ ++|+++++++.+.+. |+..+.+.+++++ +.|+|++|+|+..+.+-+.
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~ 107 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAEWID 107 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHHHHH
T ss_pred eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHHH
Confidence 4899999999998 789998876 67765 789999998887765 8888889999986 5899999999987766555
Q ss_pred hccCccccccCCCc-EEEEc-CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 75 FDKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 75 ~~~~~l~~~l~~~~-~vv~~-s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
. .+..|+ +++.- -+......+++.+...+.++.+.
T Consensus 108 ---~----al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 144 (350)
T 3rc1_A 108 ---R----ALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLM 144 (350)
T ss_dssp ---H----HHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred ---H----HHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 2 233454 44432 24467778888887777776654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.8e-09 Score=79.21 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=57.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH-HCCCccc----CCHHH---H-HhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVG----GSPAE---V-IKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-~~g~~~~----~~~~~---~-~~~~dvvii~vp~~~~~~ 71 (291)
|+|.|+|+|.+|..++..|.+.|++|+++++++++++.+. ..|.... .+.+. . +.++|+||+|+|.+....
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~ 99 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDSTNF 99 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHHHH
Confidence 5899999999999999999999999999999999888776 4554322 12222 1 457999999998866544
Q ss_pred HHH
Q 022834 72 SVV 74 (291)
Q Consensus 72 ~v~ 74 (291)
.+.
T Consensus 100 ~~~ 102 (155)
T 2g1u_A 100 FIS 102 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-08 Score=88.34 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=82.2
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHC-CC-cccCCHHHHHh--hCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+|.||..++..|.+. +++++ ++|+++++++.+.+. |+ ..+++.++++. ++|+|++|+|...+.+.+.
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~ 82 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVI 82 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHHH
Confidence 3899999999999999999874 56765 789999998887654 65 47889999987 7999999999877765554
Q ss_pred hccCccccccCCCc-EEEEcC-CCCHHHHHHHHHHHHhcCCcEE
Q 022834 75 FDKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 75 ~~~~~l~~~l~~~~-~vv~~s-~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
. .+..|+ +++.-- +..+...+++.+...+.++.+.
T Consensus 83 ---~----al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~ 119 (344)
T 3ezy_A 83 ---A----CAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILF 119 (344)
T ss_dssp ---H----HHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEE
T ss_pred ---H----HHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 2 233444 444422 4567778888887777776554
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.1e-09 Score=89.84 Aligned_cols=110 Identities=14% Similarity=0.138 Sum_probs=80.8
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcE-EEEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKV-TVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||..++..|.+. ++++ .++|+++++++.+.+. +..+++.+++++ ++|+|++|+|...+.+-+.
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~-- 87 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEITL-- 87 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHHH--
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHHH--
Confidence 4899999999999999999885 5664 4889998887766555 566778889885 7999999998877655444
Q ss_pred cCccccccCCCc-EEEE-cCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 77 KGGVLEQICPGK-GYID-MSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 77 ~~~l~~~l~~~~-~vv~-~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
..+..|+ +++. ..+......+++.+...+.++.+...
T Consensus 88 -----~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~ 126 (315)
T 3c1a_A 88 -----AAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVE 126 (315)
T ss_dssp -----HHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEE
T ss_pred -----HHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 2234555 4555 23456777788887777777665543
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-09 Score=92.99 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=78.5
Q ss_pred CeEEEEecChhhHHHHHHHHh--CCCcEEEEcCCcchhHHHHHC------CCcccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH------GATVGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~------g~~~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
++|+|||+|.||..++..|.+ ...+|.+|||++++++.+.+. .+. +.+.++++ ++|+|++|+|... .
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~---p 200 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK---P 200 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS---C
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC---c
Confidence 379999999999999999987 346799999999999888753 234 67888999 9999999998642 3
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
++ . ...++++++|++.++..|. .+++...+..++..|+|.
T Consensus 201 v~---~--~~~l~~G~~V~~ig~~~p~-~~el~~~~~~~a~v~vD~ 240 (322)
T 1omo_A 201 VV---K--AEWVEEGTHINAIGADGPG-KQELDVEILKKAKIVVDD 240 (322)
T ss_dssp CB---C--GGGCCTTCEEEECSCCSTT-CCCBCHHHHHTEEEEESC
T ss_pred ee---c--HHHcCCCeEEEECCCCCCC-ccccCHHHHhcCeEEECC
Confidence 33 1 2457789999999877665 333433333333455554
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.6e-09 Score=89.02 Aligned_cols=93 Identities=16% Similarity=0.226 Sum_probs=64.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHH---CC------CcccCCHHHHHhhCCEEEEecCCHH-
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVA---HG------ATVGGSPAEVIKKCTITIGMLADPA- 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~---~g------~~~~~~~~~~~~~~dvvii~vp~~~- 68 (291)
|||+|||+|.||..++..|+.+|+ +|+++|+++++++.... +. ..+..+..+.++++|+||++++.+.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~~~ 80 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGANQK 80 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC-----
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCCCC
Confidence 899999999999999999999999 99999999876654322 11 1222122356789999999995443
Q ss_pred --------------HHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 69 --------------AALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 69 --------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
.++++. +.+.+. .++.+++..||..
T Consensus 81 ~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~~~vi~~tNP~ 119 (304)
T 2v6b_A 81 PGESRLDLLEKNADIFRELV---PQITRA-APDAVLLVTSNPV 119 (304)
T ss_dssp -------CHHHHHHHHHHHH---HHHHHH-CSSSEEEECSSSH
T ss_pred CCCcHHHHHHhHHHHHHHHH---HHHHHh-CCCeEEEEecCch
Confidence 234555 555555 4777777766653
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-08 Score=75.64 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=55.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc----CCHHHH----HhhCCEEEEecCCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~~dvvii~vp~~~~~ 70 (291)
|+|.|+|+|.+|..++..|.+.|++|+++|+++++++.+.+.+..+. .+.+.+ ++++|++|+++|+...-
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n 84 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFN 84 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHH
Confidence 37999999999999999999999999999999999998888775431 222222 24789999999865443
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.3e-09 Score=90.44 Aligned_cols=92 Identities=11% Similarity=0.303 Sum_probs=65.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhH--HHH-HCCC------cc--cCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD--ELV-AHGA------TV--GGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~--~l~-~~g~------~~--~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..++..|+.+|+ +|+++|+++++++ .+. ..+. .+ ..+ .+.++++|+||+|++.+
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~~~ 86 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAGPR 86 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCCCC
Confidence 799999999999999999999999 9999999987765 221 2222 11 123 35567999999999432
Q ss_pred H---------------HHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 68 A---------------AALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 68 ~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
. .+++++ +.+.+. .++++|+..+++.
T Consensus 87 ~~~g~~r~~~~~~n~~~~~~~~---~~i~~~-~~~~~vi~~~Np~ 127 (319)
T 1lld_A 87 QKPGQSRLELVGATVNILKAIM---PNLVKV-APNAIYMLITNPV 127 (319)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHH---HHHHHH-CTTSEEEECCSSH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCceEEEecCch
Confidence 1 223555 555554 5778888777753
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-08 Score=88.31 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=81.1
Q ss_pred CeEEEEecChhhHHHHHHHH-h-CCCcEE-EEcCCcchhHHHHHC-C--CcccCCHHHHHhh--CCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLL-R-NGFKVT-VWNRTLSKCDELVAH-G--ATVGGSPAEVIKK--CTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~-~g~~V~-~~~r~~~~~~~l~~~-g--~~~~~~~~~~~~~--~dvvii~vp~~~~~~~ 72 (291)
|||+|||+|.||..++..|. + .++++. ++|+++++++.+.+. | ...+++.++++++ +|+|++|+|+..+.+-
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 82 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHESS 82 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHHH
Confidence 38999999999999999998 4 467765 789999998887754 6 5778899999875 8999999998877665
Q ss_pred HHhccCccccccCCCcEEE-EcC-CCCHHHHHHHHHHHHhcCCcE
Q 022834 73 VVFDKGGVLEQICPGKGYI-DMS-TVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv-~~s-~~~~~~~~~~~~~~~~~~~~~ 115 (291)
+. ..+..|+.|+ .-- +......+++.+...+.+..+
T Consensus 83 ~~-------~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 83 VL-------KAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL 120 (344)
T ss_dssp HH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred HH-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence 55 2234555444 322 346677788877777767654
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-08 Score=88.00 Aligned_cols=110 Identities=10% Similarity=0.095 Sum_probs=77.5
Q ss_pred CeEEEEecChhhH-HHHHHHHhC-CCcEEEEcCCcchhHHHHHC-CCcc-cCCHHHHH-hhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRN-GFKVTVWNRTLSKCDELVAH-GATV-GGSPAEVI-KKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~-g~~V~~~~r~~~~~~~l~~~-g~~~-~~~~~~~~-~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|.||. .++..|.+. +++++++|+++++++.+.+. |+.. ..+..+++ .++|+|++|+|...+.+-+.
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~- 81 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA- 81 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH-
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHH-
Confidence 4899999999998 599988764 67877999999998887654 6553 44444555 67999999998876655544
Q ss_pred ccCccccccCCCc-EEEEc-CCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 76 DKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 76 ~~~~l~~~l~~~~-~vv~~-s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
. .+..|+ +++.- .+......+++.+...+.++.+..
T Consensus 82 --~----al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (323)
T 1xea_A 82 --F----FLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYV 119 (323)
T ss_dssp --H----HHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred --H----HHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEE
Confidence 1 233454 44542 344567777888777777766553
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=9.6e-09 Score=88.55 Aligned_cols=92 Identities=10% Similarity=0.075 Sum_probs=67.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHH--------C--C--CcccCCHHHHHhhCCEEEEec--C
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA--------H--G--ATVGGSPAEVIKKCTITIGML--A 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~--------~--g--~~~~~~~~~~~~~~dvvii~v--p 65 (291)
|||+|||+|.||..++..|+..|+ +|++||+++++++.... . . +..+.+.++.++++|+||+++ |
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~p 89 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLT 89 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCCC
Confidence 699999999999999999999998 99999999887765211 1 1 233567877889999999998 4
Q ss_pred CHH------------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 66 DPA------------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 66 ~~~------------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
... .++++. +.+.+.. ++.+++..||.
T Consensus 90 ~~~g~~~~~~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~vi~~tNP 134 (331)
T 1pzg_A 90 KVPGKPDSEWSRNDLLPFNSKIIREIG---QNIKKYC-PKTFIIVVTNP 134 (331)
T ss_dssp SCTTCCGGGCCGGGGHHHHHHHHHHHH---HHHHHHC-TTCEEEECCSS
T ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCcEEEEEcCc
Confidence 211 144555 5555554 67777766554
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.9e-08 Score=85.03 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=82.4
Q ss_pred CeEEEEecChhhH-HHHHHHHhCCCcE-EEEcCCcchhHHHHHC--CCcccCCHHHHHh--hCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRNGFKV-TVWNRTLSKCDELVAH--GATVGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~g~~V-~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~ 74 (291)
|||||||+|.+|. .++..|...++++ .++|+++++++.+.+. +...+.+.+++++ +.|+|++|+|+..+.+-+.
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~ 84 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAELAL 84 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHHHH
Confidence 5899999999996 6777787778885 5889999999888765 5778889999986 5899999999988776665
Q ss_pred hccCccccccCCCc-EEEEc-CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 75 FDKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 75 ~~~~~l~~~l~~~~-~vv~~-s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
. .+..|+ +++.- .+......+++.+...+.++.+.
T Consensus 85 ---~----al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 121 (336)
T 2p2s_A 85 ---R----TLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA 121 (336)
T ss_dssp ---H----HHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred ---H----HHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2 334555 44442 34566777888877777676554
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-08 Score=86.43 Aligned_cols=109 Identities=15% Similarity=0.206 Sum_probs=79.6
Q ss_pred CeEEEEecChhhHHHHHHHH-h-CCCcE-EEEcCCcchhHHHHHC-CC-cccCCHHHHHh--hCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLL-R-NGFKV-TVWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~-~g~~V-~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvvii~vp~~~~~~~v 73 (291)
|||+|||+|.||..++..|. + .++++ .++|+++++++.+.+. |. ..+++.+++++ ++|+|++|+|...+.+.+
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 88 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMT 88 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHHHH
Confidence 48999999999999999998 5 46774 5789999998887765 66 56788999886 689999999887766555
Q ss_pred HhccCccccccCCCcEEEEc--CCCCHHHHHHHHHHHHhc-CCcEE
Q 022834 74 VFDKGGVLEQICPGKGYIDM--STVDHETSIKISRAITSK-GGHFL 116 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~--s~~~~~~~~~~~~~~~~~-~~~~~ 116 (291)
. ..+..|+.|+.- .+......+++.+...+. ++.+.
T Consensus 89 ~-------~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~ 127 (346)
T 3cea_A 89 I-------YAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQ 127 (346)
T ss_dssp H-------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEE
T ss_pred H-------HHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEE
Confidence 4 223455544432 234566677777766666 66554
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=86.86 Aligned_cols=91 Identities=15% Similarity=0.140 Sum_probs=66.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHH----H------C--CCcccCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----A------H--GATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~------~--g~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..++..|+.+|+ +|++||+++++++... + . .+..+.+. +.+++||+||++++.+
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p 93 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP 93 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 589999999999999999999999 9999999988776422 1 0 13334566 6788999999998332
Q ss_pred H---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 A---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. .++++. +++.+.. ++.+++..||.
T Consensus 94 ~k~g~tr~dl~~~n~~i~~~i~---~~i~~~~-p~a~viv~tNP 133 (328)
T 2hjr_A 94 RKPNMTRSDLLTVNAKIVGSVA---ENVGKYC-PNAFVICITNP 133 (328)
T ss_dssp CCTTCCSGGGHHHHHHHHHHHH---HHHHHHC-TTCEEEECCSS
T ss_pred CCCCCchhhHHhhhHHHHHHHH---HHHHHHC-CCeEEEEecCc
Confidence 1 244455 5555554 67777766664
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-08 Score=85.71 Aligned_cols=111 Identities=11% Similarity=0.076 Sum_probs=79.6
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHC-CCc-ccCCHHHHHh--hCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GAT-VGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~~-~~~~~~~~~~--~~dvvii~vp~~~~~~~v~ 74 (291)
|||||||+|.||..++..|.+. +.+++ ++|+++++++.+.+. |+. .+.+.++++. ++|+|++|+|...+.+-+.
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~ 85 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAK 85 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHH
Confidence 3799999999999999999875 45655 779999998887765 664 6789999987 7899999999877766554
Q ss_pred hccCccccccCCCcE-EEEc-CCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 75 FDKGGVLEQICPGKG-YIDM-STVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~-vv~~-s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
..+..|+. ++.- -+......+++.+...+.++.+..+
T Consensus 86 -------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~ 124 (329)
T 3evn_A 86 -------AALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEA 124 (329)
T ss_dssp -------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred -------HHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 22334544 4432 2446677788887777777665533
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.7e-08 Score=86.85 Aligned_cols=108 Identities=17% Similarity=0.260 Sum_probs=81.0
Q ss_pred CeEEEEecChhhHHHHHHHH-h-CCCcEE-EEcCCcchhHHHHHC-C--CcccCCHHHHHh--hCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLL-R-NGFKVT-VWNRTLSKCDELVAH-G--ATVGGSPAEVIK--KCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~-~g~~V~-~~~r~~~~~~~l~~~-g--~~~~~~~~~~~~--~~dvvii~vp~~~~~~~ 72 (291)
|||+|||+|.||..++..|. + .++++. ++|+++++++.+.+. | ...+.+.++++. +.|+|++|+|+..+.+-
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 103 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHADV 103 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHHHH
Confidence 38999999999999999998 4 467765 789999998887765 6 677889999987 48999999999887665
Q ss_pred HHhccCccccccCCCcE-EEEc-CCCCHHHHHHHHHHHHhcCCcE
Q 022834 73 VVFDKGGVLEQICPGKG-YIDM-STVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~-vv~~-s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
+. . .+..|+. ++.- -+......+++.+...+.+..+
T Consensus 104 ~~---~----al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 104 AV---A----ALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp HH---H----HHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred HH---H----HHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 55 2 2334544 4432 2446677788887777766644
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.3e-09 Score=89.40 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=79.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-CC---ccc--CCHHHHHhhCCEEEEecCCHHHH--H
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GA---TVG--GSPAEVIKKCTITIGMLADPAAA--L 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~---~~~--~~~~~~~~~~dvvii~vp~~~~~--~ 71 (291)
+++.|||+|.||.+++..|.+.|. +|++++|++++++.+.+. +. .+. ++..+.+.++|+||.|+|.+..- +
T Consensus 142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~~ 221 (297)
T 2egg_A 142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVE 221 (297)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCCS
T ss_pred CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCCC
Confidence 479999999999999999999997 899999999999888754 32 222 23445567899999999865421 1
Q ss_pred HHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
.+.+ . ...++++.+++|++.. |.... +.+...+.|+.+++.
T Consensus 222 ~~~i--~--~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~~~v~G 262 (297)
T 2egg_A 222 VQPL--S--LERLRPGVIVSDIIYN-PLETK-WLKEAKARGARVQNG 262 (297)
T ss_dssp CCSS--C--CTTCCTTCEEEECCCS-SSSCH-HHHHHHHTTCEEECS
T ss_pred CCCC--C--HHHcCCCCEEEEcCCC-CCCCH-HHHHHHHCcCEEECC
Confidence 1110 1 1346688999999885 44333 555566677766543
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.77 E-value=5.2e-08 Score=84.23 Aligned_cols=109 Identities=18% Similarity=0.254 Sum_probs=80.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCC---Cc-EEEEcCCcchhHHHHHC-CC-cccCCHHHHHh--hCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG---FK-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g---~~-V~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvvii~vp~~~~~~~ 72 (291)
|||||||+|.||..++..|.+.+ ++ |.++|+++++++.+.+. |+ ..+++.++++. +.|+|++|+|+..+.+-
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~ 82 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAA 82 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHHH
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 38999999999999999998754 34 44789999998888765 66 47889999987 58999999999887665
Q ss_pred HHhccCccccccCCCcE-EEEc-CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 73 VVFDKGGVLEQICPGKG-YIDM-STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~-vv~~-s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+. . .+..|+. ++.- -+......+++.+...+.++.+.
T Consensus 83 ~~---~----al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~ 121 (334)
T 3ohs_X 83 VM---L----CLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLM 121 (334)
T ss_dssp HH---H----HHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEE
T ss_pred HH---H----HHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 55 2 2334554 4442 24466777888877777776554
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.5e-08 Score=86.20 Aligned_cols=108 Identities=10% Similarity=0.089 Sum_probs=79.7
Q ss_pred eEEEEecChhhHH-HHHHHHhC-CCcEE-EEcCCcchhHHHHHC--CCcccCCHHHHHhhC--CEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH--GATVGGSPAEVIKKC--TITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~~--dvvii~vp~~~~~~~v~ 74 (291)
||||||+|.||.. ++..|.+. +.++. ++|+++++++.+.+. +...+++.++++++. |+|++|+|+..+.+-+.
T Consensus 7 rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~ 86 (359)
T 3m2t_A 7 KVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEMGL 86 (359)
T ss_dssp EEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 7999999999985 88888875 67766 889999998888775 567788999998754 99999999877766555
Q ss_pred hccCccccccCCCcEEE-Ec-CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 75 FDKGGVLEQICPGKGYI-DM-STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv-~~-s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+..|+.|+ .- -.......+++.+...+.++.+.
T Consensus 87 -------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~ 123 (359)
T 3m2t_A 87 -------LAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVSG 123 (359)
T ss_dssp -------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred -------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 2234555444 31 13456677777777766666543
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.75 E-value=6.6e-08 Score=84.49 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=81.9
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcE-EEEcCCcchhHHHHHC-C----CcccCCHHHHHh--hCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKV-TVWNRTLSKCDELVAH-G----ATVGGSPAEVIK--KCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V-~~~~r~~~~~~~l~~~-g----~~~~~~~~~~~~--~~dvvii~vp~~~~~~ 71 (291)
|||+|||+|.||..++..|.+. ++++ .++|+++++++.+.+. | ...+.+.+++++ ++|+|++|+|+..+.+
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 86 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE 86 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHHH
Confidence 5899999999999999999875 5665 4789999988877654 5 356788999886 5899999998877655
Q ss_pred HHHhccCccccccCCCcEEEEc--CCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 72 SVVFDKGGVLEQICPGKGYIDM--STVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~--s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
-+. ..+..|+.|+.- .+......+++.+...+.++.+..+
T Consensus 87 ~~~-------~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~ 128 (362)
T 1ydw_A 87 WAI-------KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDG 128 (362)
T ss_dssp HHH-------HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEEC
T ss_pred HHH-------HHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 444 234456654432 2345677788888777778766643
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-06 Score=71.44 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=85.3
Q ss_pred CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE---cc
Q 022834 43 GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE---AP 119 (291)
Q Consensus 43 g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~---~~ 119 (291)
|+.++++..|+++++|++|+.+|......+++ +.+.+++++|.+|.+.+|.+|...-+..+.+....+.+.+ +.
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Ia---kkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPaa 204 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGC 204 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSS
T ss_pred CcEeecchHHHhcCCCEEEEecCCCCCcHHHH---HHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 67888999999999999999999987778888 8899999999999999999987776666655544454442 22
Q ss_pred cCCChHhhcccceEEEec-CCHHHHHHHHHHHHHhccceEeeC
Q 022834 120 VSGSKQPAETGQLVILSA-GEKALYDEAISALNVIGKKAFFLG 161 (291)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~ll~~~g~~~~~~~ 161 (291)
+.|. .|+..+--+ .++++.+++-++.+..++..+.+.
T Consensus 205 VPgt-----~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vP 242 (358)
T 2b0j_A 205 VPEM-----KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMP 242 (358)
T ss_dssp CTTT-----CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred CCCC-----CCccccccccCCHHHHHHHHHHHHHhCCCeEecc
Confidence 3333 455433222 289999999999999999987754
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.8e-09 Score=87.36 Aligned_cols=111 Identities=19% Similarity=0.151 Sum_probs=75.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCc-ccCCHHHHHhhCCEEEEecCCHHH--HHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAA--ALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~~dvvii~vp~~~~--~~~v~~~ 76 (291)
+++.|+|+|.||.+++..|.+.|. +|++++|++++++.+.+.... ...+..+.+.++|+||.|+|.... .+..+
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l-- 195 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVI-- 195 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCSS--
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCC--
Confidence 378999999999999999999998 899999999988776543211 123445556789999999976431 11111
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
. ...++++.+++|++.....+ .+.+...++|+..++.
T Consensus 196 -~--~~~l~~~~~V~D~vY~P~~T--~ll~~A~~~G~~~~~G 232 (277)
T 3don_A 196 -S--LNRLASHTLVSDIVYNPYKT--PILIEAEQRGNPIYNG 232 (277)
T ss_dssp -C--CTTCCSSCEEEESCCSSSSC--HHHHHHHHTTCCEECT
T ss_pred -C--HHHcCCCCEEEEecCCCCCC--HHHHHHHHCcCEEeCC
Confidence 1 23466889999998763332 3555566777766543
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-08 Score=86.90 Aligned_cols=105 Identities=13% Similarity=0.191 Sum_probs=75.7
Q ss_pred eEEEEecChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHHHC-----CC--cccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAH-----GA--TVGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~-----g~--~~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
+++|||+|.||..++..|.+. ..+|++|||+ +.+.+.+. |+ ... +.+++++++|+|++|+|.. +.
T Consensus 123 ~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---~p 196 (313)
T 3hdj_A 123 VLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---TP 196 (313)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---SC
T ss_pred EEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---Cc
Confidence 799999999999999999863 3679999999 66655442 54 345 8999999999999999763 23
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC-CcEEEc
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG-GHFLEA 118 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~-~~~~~~ 118 (291)
++ . .++++++++|+++++..|.. +++...+..+. ..|+|.
T Consensus 197 vl---~--~~~l~~G~~V~~vGs~~p~~-~El~~~~~~~a~~v~vD~ 237 (313)
T 3hdj_A 197 LF---A--GQALRAGAFVGAIGSSLPHT-RELDDEALRRARAVVVEW 237 (313)
T ss_dssp SS---C--GGGCCTTCEEEECCCSSTTC-CCCCHHHHHHCSEEEESC
T ss_pred cc---C--HHHcCCCcEEEECCCCCCch-hhcCHHHHhcCCEEEECC
Confidence 44 2 34678999999999887754 44443333333 345553
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-08 Score=87.55 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=73.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|+|+|+|.+|..++..|...|.+|+++|+++.+.......|.... +.+++++++|+|+++.++.. ++. .+.
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~-sL~eal~~ADVVilt~gt~~----iI~--~e~ 284 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVL-LVEDVVEEAHIFVTTTGNDD----IIT--SEH 284 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCSC----SBC--TTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeec-CHHHHHhhCCEEEECCCCcC----ccC--HHH
Confidence 47999999999999999999999999999999877766666777654 89999999999998764322 221 244
Q ss_pred ccccCCCcEEEEcCCCCH
Q 022834 81 LEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~ 98 (291)
...++++.+|++++.+.+
T Consensus 285 l~~MK~gAIVINvgRg~v 302 (436)
T 3h9u_A 285 FPRMRDDAIVCNIGHFDT 302 (436)
T ss_dssp GGGCCTTEEEEECSSSGG
T ss_pred HhhcCCCcEEEEeCCCCC
Confidence 566789999999997754
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-08 Score=86.47 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=84.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++||||+|++|..+++.+..-|.+|..||+.+.. ...+.+... .+.++++++||+|.+++|-..+.+.++- ++.
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~--~~~~~~~~~-~~l~ell~~sDivslh~Plt~~T~~li~--~~~ 216 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRE--DLKEKGCVY-TSLDELLKESDVISLHVPYTKETHHMIN--EER 216 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBC--HHH
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccch--hhhhcCcee-cCHHHHHhhCCEEEEcCCCChhhccCcC--HHH
Confidence 37999999999999999999999999999987543 344556554 5899999999999999997666665552 244
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++-+.....+.+.+.+.+.
T Consensus 217 l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g 247 (334)
T 3kb6_A 217 ISLMKDGVYLINTARGKVVDTDALYRAYQRG 247 (334)
T ss_dssp HHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred HhhcCCCeEEEecCccccccHHHHHHHHHhC
Confidence 5567899999999998777777777777654
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.9e-09 Score=85.52 Aligned_cols=107 Identities=18% Similarity=0.091 Sum_probs=74.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
+|+|||+|.||.+++..|.+.|. +|++++|++++++.+.+. +.....+..+.++++|+||.|+|....-. . ..
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~--~---~~ 184 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGE--E---LP 184 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSC--C---CS
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCC--C---CC
Confidence 68999999999999999999998 899999999988877654 22234566777889999999997532100 0 11
Q ss_pred c-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc-EEE
Q 022834 80 V-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLE 117 (291)
Q Consensus 80 l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~-~~~ 117 (291)
+ ...++++++|+|+... +. . +.+...+.|+. .++
T Consensus 185 i~~~~l~~~~~V~Divy~-~T--~-ll~~A~~~G~~~~~~ 220 (253)
T 3u62_A 185 VSDDSLKNLSLVYDVIYF-DT--P-LVVKARKLGVKHIIK 220 (253)
T ss_dssp CCHHHHTTCSEEEECSSS-CC--H-HHHHHHHHTCSEEEC
T ss_pred CCHHHhCcCCEEEEeeCC-Cc--H-HHHHHHHCCCcEEEC
Confidence 1 1235688999998877 32 2 22333455766 443
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-08 Score=88.73 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=69.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC-------------------------CHHHHHhh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG-------------------------SPAEVIKK 56 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~-------------------------~~~~~~~~ 56 (291)
||+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.|..+.. ++.+.+++
T Consensus 186 kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~ 265 (381)
T 3p2y_A 186 SALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITK 265 (381)
T ss_dssp EEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTT
T ss_pred EEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhc
Confidence 79999999999999999999999999999999999888887765432 34567789
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+|+||.++..+..-...+.. ++..+.++++.+|||++.-
T Consensus 266 aDIVI~tv~iPg~~ap~Lvt-~emv~~MkpGsVIVDvA~d 304 (381)
T 3p2y_A 266 FDIVITTALVPGRPAPRLVT-AAAATGMQPGSVVVDLAGE 304 (381)
T ss_dssp CSEEEECCCCTTSCCCCCBC-HHHHHTSCTTCEEEETTGG
T ss_pred CCEEEECCCCCCcccceeec-HHHHhcCCCCcEEEEEeCC
Confidence 99999886221100111111 2444566789999998753
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.3e-08 Score=80.08 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=55.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-CCCcc----cCCHH---HH-HhhCCEEEEecCCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATV----GGSPA---EV-IKKCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~----~~~~~---~~-~~~~dvvii~vp~~~~~ 70 (291)
|||.|+|+|.+|..++..|.+.|++|+++|+++++++.+.+ .+..+ ..+.+ ++ ++++|++|++++++..-
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n 79 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN 79 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH
Confidence 89999999999999999999999999999999999988765 35432 11222 22 35799999999876543
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-08 Score=89.51 Aligned_cols=99 Identities=16% Similarity=0.079 Sum_probs=76.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|+|||+|.||..+++.+...|.+|++||+++.+.......|... .+.+++++++|+|++++... .++. .+.
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~~t~----~lI~--~~~ 330 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNV----DVIK--LEH 330 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSS----SSBC--HHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECCChh----hhcC--HHH
Confidence 4799999999999999999999999999999987765555667754 48999999999999997332 2220 123
Q ss_pred ccccCCCcEEEEcCCCCH-HHHHHHHH
Q 022834 81 LEQICPGKGYIDMSTVDH-ETSIKISR 106 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~-~~~~~~~~ 106 (291)
...++++.++++++.+.. ...+.+.+
T Consensus 331 l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 331 LLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp HTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred HhhcCCCcEEEEeCCCCccccchhhhc
Confidence 345778999999999877 35566654
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-08 Score=83.20 Aligned_cols=91 Identities=10% Similarity=0.189 Sum_probs=65.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHH---C-------C--CcccCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA---H-------G--ATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~---~-------g--~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..++..|+..|+ +|.++|+++++++.... . . +..+.+. +.+++||+||++++.+
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~p 83 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGFT 83 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 589999999999999999999998 99999999887763221 1 1 2233566 6788999999998322
Q ss_pred H--------------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 A--------------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ~--------------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. .++++. +++.+.. ++.+++..||.
T Consensus 84 ~k~g~~~qe~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~iiv~tNP 128 (322)
T 1t2d_A 84 KAPGKSDKEWNRDDLLPLNNKIMIEIG---GHIKKNC-PNAFIIVVTNP 128 (322)
T ss_dssp SCTTCCSTTCCGGGGHHHHHHHHHHHH---HHHHHHC-TTSEEEECSSS
T ss_pred CCCCCCcccccHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecCC
Confidence 1 244454 4555554 67777766654
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.7e-08 Score=82.34 Aligned_cols=105 Identities=10% Similarity=0.124 Sum_probs=67.7
Q ss_pred CeEEEEecChhhHHHHHHHHh-CCCcEE-EEcCCcchhHHHHHCCCcc--cCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKCDELVAHGATV--GGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~-~g~~V~-~~~r~~~~~~~l~~~g~~~--~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||..++..|.+ .++++. ++|+++++++. .|+.. .++..+. .++|+|++|+|...+.+.+.
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~~~-- 83 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVERTAL-- 83 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHHHH--
T ss_pred CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhHHHHH--
Confidence 389999999999999999987 467776 78999887654 45442 3344443 57999999998877655444
Q ss_pred cCccccccCCCcEEEEcCCC---CHHHHHHHHHHHHhcCCcEE
Q 022834 77 KGGVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+..|+.+++.+.. .+...+++.+...+.+..+.
T Consensus 84 -----~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~ 121 (304)
T 3bio_A 84 -----EILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAV 121 (304)
T ss_dssp -----HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEE
T ss_pred -----HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 334567777776432 34555666666666665443
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=6.3e-08 Score=86.66 Aligned_cols=111 Identities=13% Similarity=0.110 Sum_probs=80.6
Q ss_pred CeEEEEecChhhH-HHHHHHHhC-CCcE-EEEcCCcchhHHHHHC-CCc-----ccCCHHHHHh--hCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRN-GFKV-TVWNRTLSKCDELVAH-GAT-----VGGSPAEVIK--KCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~-g~~V-~~~~r~~~~~~~l~~~-g~~-----~~~~~~~~~~--~~dvvii~vp~~~~ 69 (291)
|||+|||+|.||. .++..|.+. ++++ .++|+++++++.+.+. |+. .+.+.+++++ ++|+|++|+|+..+
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h 163 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH 163 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhH
Confidence 4899999999997 899998875 5665 5889999988877654 654 5778889886 68999999998777
Q ss_pred HHHHHhccCccccccCCCc-EEEEc-CCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 70 ALSVVFDKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~-~vv~~-s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
.+-+. . .+..|+ +++.- .+......+++.+...+.++.+..+
T Consensus 164 ~~~~~---~----al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~ 207 (433)
T 1h6d_A 164 AEFAI---R----AFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIG 207 (433)
T ss_dssp HHHHH---H----HHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHH---H----HHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence 66555 2 234555 44432 2345677778887777777665533
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-08 Score=87.52 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=69.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC-----------------------------CHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG-----------------------------SPAE 52 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~-----------------------------~~~~ 52 (291)
||+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.|..+.. ++.+
T Consensus 192 kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e 271 (405)
T 4dio_A 192 KIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAE 271 (405)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHH
Confidence 79999999999999999999999999999999998888877654321 3466
Q ss_pred HHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCC
Q 022834 53 VIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 53 ~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
.++++|+||.|+.-+..-...++. ++.....+++.+|||++.
T Consensus 272 ~l~~aDVVI~tvlipg~~ap~Lvt-~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 272 HIAKQDIVITTALIPGRPAPRLVT-REMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHTCSEEEECCCCSSSCCCCCBC-HHHHTTSCTTCEEEETTG
T ss_pred HhcCCCEEEECCcCCCCCCCEEec-HHHHhcCCCCCEEEEEeC
Confidence 778999999986222111111111 344556779999999884
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=83.88 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=82.3
Q ss_pred CeEEEEecC-hhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHhh--CCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLG-IMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKK--CTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G-~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~--~dvvii~vp~~~~~~~v~ 74 (291)
|||||||+| .||..++..|.+. ++++. ++|+++++++.+.+. |+..+.+.++++++ .|+|++|+|+..+.+-+.
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~ 82 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHVV 82 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHHH
Confidence 589999999 9999999999875 56655 789999988877654 88888999999875 899999999887766554
Q ss_pred hccCccccccCCCcEEEEc--CCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 75 FDKGGVLEQICPGKGYIDM--STVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~--s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
..+..|+.|+.- -.......+++.+...+.++.+..
T Consensus 83 -------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 120 (387)
T 3moi_A 83 -------QASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVV 120 (387)
T ss_dssp -------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEE
T ss_pred -------HHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEE
Confidence 223355544432 134567778888777777766543
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.3e-08 Score=88.06 Aligned_cols=97 Identities=15% Similarity=0.056 Sum_probs=74.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|+|||+|.||..+|+.+...|.+|++||+++.+.......|... .+.+++++++|+|++++... .++. .+.
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~~t~----~lI~--~~~ 350 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTATGNY----HVIN--HDH 350 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECSSSS----CSBC--HHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECCCcc----cccC--HHH
Confidence 4799999999999999999999999999999987654444557665 47999999999999998332 2220 133
Q ss_pred ccccCCCcEEEEcCCCCHH-HHHHH
Q 022834 81 LEQICPGKGYIDMSTVDHE-TSIKI 104 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~-~~~~~ 104 (291)
...++++.++|+++.+... ..+.+
T Consensus 351 l~~MK~gAilINvgrg~veID~~aL 375 (494)
T 3d64_A 351 MKAMRHNAIVCNIGHFDSEIDVAST 375 (494)
T ss_dssp HHHCCTTEEEEECSSSSCSBCCGGG
T ss_pred HhhCCCCcEEEEcCCCcchhchHHH
Confidence 4567789999999988663 44444
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-08 Score=87.28 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=80.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCC----cc--cCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA----TV--GGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~----~~--~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||.|+|+|.+|..++..|++ .++|++++++.++++.+.+... .+ .+++.++++++|+||.|+|...+ ..++
T Consensus 17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~-~~v~ 94 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLG-FKSI 94 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGH-HHHH
T ss_pred cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCccc-chHH
Confidence 899999999999999999976 4899999999998887765421 11 12334567889999999977543 3444
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCC
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGS 123 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 123 (291)
+ ..+..++.++|+|-..+ ....+.+...+.|+.++ ++.+.-+
T Consensus 95 ---~---~~~~~g~~yvD~s~~~~-~~~~l~~~a~~~g~~~i~~~G~~PG 137 (365)
T 3abi_A 95 ---K---AAIKSKVDMVDVSFMPE-NPLELRDEAEKAQVTIVFDAGFAPG 137 (365)
T ss_dssp ---H---HHHHHTCEEEECCCCSS-CGGGGHHHHHHTTCEEECCCBTTTB
T ss_pred ---H---HHHhcCcceEeeeccch-hhhhhhhhhccCCceeeecCCCCCc
Confidence 2 22456778898875433 34556666667777766 5554443
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.8e-08 Score=83.13 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=65.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHH----HHH------CCCc--ccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVA------HGAT--VGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~------~g~~--~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|.||.+++..|+.+|+ +|.+||+++++++. +.+ .... ..++ .+.++++|+||++.+.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 999999999999999999999988 89999999987652 111 1122 2345 7788999999999754
Q ss_pred HH---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 67 PA---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 67 ~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+. .++++. +.+.+. .++.+++..||-
T Consensus 80 ~~kpG~~R~dl~~~N~~i~~~i~---~~i~~~-~p~a~iivvsNP 120 (294)
T 1oju_A 80 ARKPGMTRLDLAHKNAGIIKDIA---KKIVEN-APESKILVVTNP 120 (294)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHH---HHHHTT-STTCEEEECSSS
T ss_pred CCCCCCcHHHHHHHHHHHHHHHH---HHHHhh-CCCeEEEEeCCc
Confidence 31 133344 445544 477788877753
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-07 Score=70.53 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=51.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc----CCHHHH----HhhCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~~dvvii~vp~~ 67 (291)
+|.|+|+|.+|..++..|.+.|++|+++++++++.+.+.+.+.... .+.+.+ .+++|+||+|++.+
T Consensus 8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 6999999999999999999999999999999888776655554321 122222 45799999999764
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.3e-08 Score=84.09 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=77.7
Q ss_pred CeEEEEecChhhHH-HHH-HHHh-CCCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHhh--CCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGKA-ISM-NLLR-NGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKK--CTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~-~l~~-~g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~--~dvvii~vp~~~~~~~v 73 (291)
|||||||+|.||.. .+. .+.. .++++. ++|+++++.+...+. ++..+++.++++.+ .|+|++|+|+..+.+-+
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 82 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 82 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHHHH
T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHHHH
Confidence 48999999999986 455 3333 367766 889998877544433 67788899999875 89999999998876655
Q ss_pred HhccCccccccCCCcEEEEcC--CCCHHHHHHHHHHHHhcCCcEE
Q 022834 74 VFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s--~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
. ..+..|+.|+.-- +......+++.+...+.++.+.
T Consensus 83 ~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (345)
T 3f4l_A 83 K-------RALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVT 120 (345)
T ss_dssp H-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred H-------HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 5 2344566665433 4466777888877777776554
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.3e-07 Score=74.44 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=62.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|+|+|+||..++..+.+.++++. ++|++++. ..|+.++++++++. ++|++|-++ .+..+.+.+ +
T Consensus 4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft-~p~a~~~~~---~- 72 (243)
T 3qy9_A 4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFS-NPNLLFPLL---D- 72 (243)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECS-CHHHHHHHH---T-
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeC-ChHHHHHHH---H-
Confidence 689999999999999999998877755 46887652 35888888888887 999998676 556666666 3
Q ss_pred cccccCCCcEEEEcCCCCH
Q 022834 80 VLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~ 98 (291)
+..+..+|..+++..
T Consensus 73 ----l~~g~~vVigTTG~s 87 (243)
T 3qy9_A 73 ----EDFHLPLVVATTGEK 87 (243)
T ss_dssp ----SCCCCCEEECCCSSH
T ss_pred ----HhcCCceEeCCCCCC
Confidence 456666666667653
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=80.09 Aligned_cols=91 Identities=9% Similarity=0.096 Sum_probs=63.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHH---C-------CC--cccCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA---H-------GA--TVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~---~-------g~--~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..++..|+..|+ +|.++|+++++++.... + .. ..+.+. +.+++||+||++++.+
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p 81 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP 81 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 599999999999999999999997 99999999877754221 1 12 223565 6688999999998544
Q ss_pred H---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 A---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. .++++. +.+.+.. ++.+++..||.
T Consensus 82 ~~~g~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~vi~~tNP 121 (309)
T 1ur5_A 82 RKPGMSREDLIKVNADITRACI---SQAAPLS-PNAVIIMVNNP 121 (309)
T ss_dssp -------CHHHHHHHHHHHHHH---HHHGGGC-TTCEEEECCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHH---HHHHhhC-CCeEEEEcCCc
Confidence 2 123344 4444443 67777666553
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-08 Score=85.02 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=77.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
.++.|||+|.+|.+++..|.+.|.+|++++|++++++.+.+.+.... +.+++ .++|+||-|+|....-+..+ ..+.+
T Consensus 119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l-~~~~l 195 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPL-NKEVL 195 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSS-CHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCC-ChHHH
Confidence 37899999999999999999999999999999999998875454433 23333 28999999997643211111 00111
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
...++++.+++|+... | ... +.+...++|+..++.-
T Consensus 196 ~~~l~~~~~v~D~vY~-P-~T~-ll~~A~~~G~~~~~Gl 231 (269)
T 3phh_A 196 KGYFKEGKLAYDLAYG-F-LTP-FLSLAKELKTPFQDGK 231 (269)
T ss_dssp HHHHHHCSEEEESCCS-S-CCH-HHHHHHHTTCCEECSH
T ss_pred HhhCCCCCEEEEeCCC-C-chH-HHHHHHHCcCEEECCH
Confidence 1235578899999876 4 323 5555667787766543
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-07 Score=81.24 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=77.8
Q ss_pred eEEEEecChhhHH-HHHHHHhC-CCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~~ 76 (291)
||||||+|.||.. .+..+.+. +++|. ++|+++++++. ...+...+.+.++++. +.|+|++|+|+..+.+-+.
T Consensus 9 rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~-- 85 (364)
T 3e82_A 9 NIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLAR-- 85 (364)
T ss_dssp EEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHH--
T ss_pred eEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHH--
Confidence 7999999999996 67777664 67765 77999877652 1226778889999987 6899999999988766555
Q ss_pred cCccccccCCCcEEEEcC--CCCHHHHHHHHHHHHhcCCcEE
Q 022834 77 KGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s--~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+..|+.|+.-- +......+++.+...+.++.+.
T Consensus 86 -----~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (364)
T 3e82_A 86 -----LALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLS 122 (364)
T ss_dssp -----HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred -----HHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 2344566555433 4466777888777777776554
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.3e-07 Score=82.13 Aligned_cols=108 Identities=8% Similarity=0.017 Sum_probs=80.9
Q ss_pred eEEEEecCh---hhHHHHHHHHhCC-CcEE--EEcCCcchhHHHHH-CCC---cccCCHHHHHhh-------CCEEEEec
Q 022834 2 EVGFLGLGI---MGKAISMNLLRNG-FKVT--VWNRTLSKCDELVA-HGA---TVGGSPAEVIKK-------CTITIGML 64 (291)
Q Consensus 2 kI~iIG~G~---mG~~la~~l~~~g-~~V~--~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~-------~dvvii~v 64 (291)
||||||+|. ||...+..+...+ ++++ ++|+++++++.+.+ .|+ ..+++.++++++ .|+|++|+
T Consensus 14 rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i~t 93 (398)
T 3dty_A 14 RWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSIAT 93 (398)
T ss_dssp EEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEEES
T ss_pred eEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEECC
Confidence 799999999 9999999887765 6766 57999999988775 477 678899999875 89999999
Q ss_pred CCHHHHHHHHhccCccccccCCCcEEEEc--CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 65 ADPAAALSVVFDKGGVLEQICPGKGYIDM--STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 65 p~~~~~~~v~~~~~~l~~~l~~~~~vv~~--s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
|...+.+-+. ..+..|+.|+.- -.......+++.+...+.++.+.
T Consensus 94 p~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 140 (398)
T 3dty_A 94 PNGTHYSITK-------AALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVG 140 (398)
T ss_dssp CGGGHHHHHH-------HHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred CcHHHHHHHH-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 9988766555 223355555431 13456677888777777776554
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-07 Score=85.73 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=73.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|+|+|+|.||..++..+...|.+|+++++++++.+...+.|... .+.+++++.+|+|+.|++....+. .+.
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt~~~i~------~~~ 347 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGNKDIIM------LEH 347 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSSSCSBC------HHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCCHHHHH------HHH
Confidence 4799999999999999999999999999999998887777788764 477888899999999996643222 123
Q ss_pred ccccCCCcEEEEcCCCCH
Q 022834 81 LEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~ 98 (291)
...++++.++++++....
T Consensus 348 l~~mk~ggilvnvG~~~~ 365 (494)
T 3ce6_A 348 IKAMKDHAILGNIGHFDN 365 (494)
T ss_dssp HHHSCTTCEEEECSSSGG
T ss_pred HHhcCCCcEEEEeCCCCC
Confidence 455678999999887643
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-07 Score=81.62 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=79.6
Q ss_pred eEEEEecCh---hhHHHHHHHHhCC-CcEE--EEcCCcchhHHHHHC-CC---cccCCHHHHHhh-------CCEEEEec
Q 022834 2 EVGFLGLGI---MGKAISMNLLRNG-FKVT--VWNRTLSKCDELVAH-GA---TVGGSPAEVIKK-------CTITIGML 64 (291)
Q Consensus 2 kI~iIG~G~---mG~~la~~l~~~g-~~V~--~~~r~~~~~~~l~~~-g~---~~~~~~~~~~~~-------~dvvii~v 64 (291)
||||||+|. ||...+..+...+ ++++ ++|+++++++.+.++ |+ ..+++.++++++ .|+|++|+
T Consensus 39 rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~t 118 (417)
T 3v5n_A 39 RLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIVT 118 (417)
T ss_dssp EEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEECS
T ss_pred eEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEECC
Confidence 799999999 9999999887765 6765 679999998887764 76 578899999876 89999999
Q ss_pred CCHHHHHHHHhccCccccccCCCcEEE-Ec-CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 65 ADPAAALSVVFDKGGVLEQICPGKGYI-DM-STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 65 p~~~~~~~v~~~~~~l~~~l~~~~~vv-~~-s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
|...+.+-+. ..+..|+.|+ .- -.......+++.+...+.++.+.
T Consensus 119 p~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 165 (417)
T 3v5n_A 119 PNHVHYAAAK-------EFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFV 165 (417)
T ss_dssp CTTSHHHHHH-------HHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEE
T ss_pred CcHHHHHHHH-------HHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 9987766555 2344555444 31 13456677778777777666554
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-07 Score=80.93 Aligned_cols=109 Identities=13% Similarity=0.106 Sum_probs=76.8
Q ss_pred CeEEEEecChhhHH-HHHHHHhC-CCcEE-EEcCCcchhHHHHHC-CC-cccCCHHHHHhh--CCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIKK--CTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~~--~dvvii~vp~~~~~~~v 73 (291)
|||||||+|.||.. +...+.+. +.+|+ ++|+++++++.++++ |+ ..++|.++++++ .|+|++|+|+..+.+-+
T Consensus 24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~~~ 103 (350)
T 4had_A 24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHIEWS 103 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHHHHH
T ss_pred cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhHHHH
Confidence 48999999999975 56677664 56765 789999999888765 65 467899998864 79999999998887666
Q ss_pred HhccCccccccCCCcEEEEcC--CCCHHHHHHHHHHHHhcCCcEE
Q 022834 74 VFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s--~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
. . .+..|+.|+.-= +......+++.+...+.++.+.
T Consensus 104 ~---~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 141 (350)
T 4had_A 104 I---K----AADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVT 141 (350)
T ss_dssp H---H----HHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEE
T ss_pred H---H----HHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCcee
Confidence 5 2 233455444311 2234556677766666666544
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.4e-07 Score=79.21 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=79.1
Q ss_pred CeEEEEecChhhH-HHHHHHHhCCCcEE-EEcCCcchhHHHHHC-C-CcccCCHHHHHhh--CCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRNGFKVT-VWNRTLSKCDELVAH-G-ATVGGSPAEVIKK--CTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~g~~V~-~~~r~~~~~~~l~~~-g-~~~~~~~~~~~~~--~dvvii~vp~~~~~~~v~ 74 (291)
+||||||+|.+|. .+...+...+.++. ++|+++++++.+.+. | ...+++.++++++ .|+|++|+|+..+.+-+.
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~ 106 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAI 106 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHHHHH
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence 3899999999995 57777777888855 789999999888765 4 6778899999875 899999999887766555
Q ss_pred hccCccccccCCCcEE-EEc-CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 75 FDKGGVLEQICPGKGY-IDM-STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~v-v~~-s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+..|+.| +.- -.......+++.+...+.++.+.
T Consensus 107 -------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~ 143 (361)
T 3u3x_A 107 -------RAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFS 143 (361)
T ss_dssp -------HHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEE
T ss_pred -------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 223355544 431 13456677777776666665443
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-07 Score=81.18 Aligned_cols=192 Identities=16% Similarity=0.130 Sum_probs=113.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc------chhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL------SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~------~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
.||+|||+|+-|.+.|.+|..+|.+|++--|.. .+.+...+.|..+. +..|+++.+|+|++.+|+. .-.+++
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~-~q~~vy 115 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDK-QHSDVV 115 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGG-GHHHHH
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChh-hHHHHH
Confidence 389999999999999999999999999887722 33455667788875 7899999999999999884 456677
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhh-----cccceEEE-ec--C--CHHHH
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPA-----ETGQLVIL-SA--G--EKALY 143 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~g~~~~~-~~--g--~~~~~ 143 (291)
+.+.+.+++|+.+.- |.+.......+ .+..++.++ -+|---+...- ..|-..++ +- . +....
T Consensus 116 ---~~I~p~lk~G~~L~f-aHGFnI~~~~i---~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liAVhqeqD~sG~a~ 188 (491)
T 3ulk_A 116 ---RTVQPLMKDGAALGY-SHGFNIVEVGE---QIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGM 188 (491)
T ss_dssp ---HHHGGGSCTTCEEEE-SSCHHHHTTCC---CCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEEECGGGCTTSCHH
T ss_pred ---HHHHhhCCCCCEEEe-cCccccccccc---ccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEEEEeCCCCchhHH
Confidence 679999999988764 55532211111 112244444 45532222111 11222222 21 1 23455
Q ss_pred HHHHHHHHHhccc--eEeeCCCChhHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022834 144 DEAISALNVIGKK--AFFLGEVGNGAKMKLVVN--MIMGCMMNTFSEGLVLAEKSGLDPRTL 201 (291)
Q Consensus 144 ~~~~~ll~~~g~~--~~~~~~~~~a~~~k~~~n--~~~~~~~~~~~E~~~~~~~~g~~~~~~ 201 (291)
+........+|.. -++-.......-.-++.- .+-.++.+++.-+.+.+.+.|.+|+.+
T Consensus 189 ~~AlayA~aiG~~raGvieTTF~eEtetDLfGEQaVLcGgl~~li~agFetLveaGy~P~~a 250 (491)
T 3ulk_A 189 AIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYA 250 (491)
T ss_dssp HHHHHHHHHHTGGGTCEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHhcCCCcCceeeccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 6666677777743 122222222222222211 112233344444566677888888643
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.55 E-value=5.8e-08 Score=72.87 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=74.9
Q ss_pred eEEEEec----ChhhHHHHHHHHhCCCcEEEEcCCcch-hHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~----G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
+|+|||+ |.+|..++++|.+.||+ +|++|+.+ .+.+ .|..++.+++|+.+..|++++++|. ..+.+++
T Consensus 15 ~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~-- 87 (140)
T 1iuk_A 15 TIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRPP-SALMDHL-- 87 (140)
T ss_dssp EEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH--
T ss_pred EEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHH--
Confidence 7999999 89999999999999997 56666653 2222 3788888999988889999999966 6677777
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
+++...- -+.+++..+.. .+++.+...+.|+.++.
T Consensus 88 -~~~~~~g-i~~i~~~~g~~----~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 88 -PEVLALR-PGLVWLQSGIR----HPEFEKALKEAGIPVVA 122 (140)
T ss_dssp -HHHHHHC-CSCEEECTTCC----CHHHHHHHHHTTCCEEE
T ss_pred -HHHHHcC-CCEEEEcCCcC----HHHHHHHHHHcCCEEEc
Confidence 4554432 23555543333 25666677778888875
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=7e-07 Score=79.17 Aligned_cols=137 Identities=20% Similarity=0.300 Sum_probs=84.2
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHC--C----------------------CcccCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH--G----------------------ATVGGSPAEVI 54 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~--g----------------------~~~~~~~~~~~ 54 (291)
+||||||+|.||..++..+.+. +.++. ++|+++++++.+.++ | ..++++.++++
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL 103 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL 103 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence 3899999999999999988764 45644 779999988876532 3 34678899988
Q ss_pred h--hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccc
Q 022834 55 K--KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQ 131 (291)
Q Consensus 55 ~--~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 131 (291)
+ +.|+|++|+|.+....+.. ...+..|+.|+..... .......+.+...+.|+.|
T Consensus 104 ~d~dIDaVviaTp~p~~H~e~a------~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl---------------- 161 (446)
T 3upl_A 104 SNPLIDVIIDATGIPEVGAETG------IAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIY---------------- 161 (446)
T ss_dssp TCTTCCEEEECSCCHHHHHHHH------HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCE----------------
T ss_pred cCCCCCEEEEcCCChHHHHHHH------HHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCee----------------
Confidence 6 4899999998864333333 2345577777743211 0112234444444444433
Q ss_pred eEEEecCC-HHHHHHHHHHHHHhccceEeeC
Q 022834 132 LVILSAGE-KALYDEAISALNVIGKKAFFLG 161 (291)
Q Consensus 132 ~~~~~~g~-~~~~~~~~~ll~~~g~~~~~~~ 161 (291)
.+..|+ ....-.+.++...+|.+++.+|
T Consensus 162 --~~~~gdqp~~~~eLv~~a~~~G~~~v~~G 190 (446)
T 3upl_A 162 --SLGAGDEPSSCMELIEFVSALGYEVVSAG 190 (446)
T ss_dssp --EECTTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred --eecCCcchHHHHHHHHHHHhCCCeEEEec
Confidence 223333 2334455666666666665544
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=4.8e-07 Score=81.22 Aligned_cols=109 Identities=14% Similarity=0.123 Sum_probs=80.0
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHH----CC---CcccC----CHHHHHh--hCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA----HG---ATVGG----SPAEVIK--KCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~----~g---~~~~~----~~~~~~~--~~dvvii~vp 65 (291)
|||+|||+|.||...+..|.+. ++++. ++|+++++++.+.+ .| ...+. +.+++++ +.|+|++|+|
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 100 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP 100 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999999999999874 56754 78999998887654 24 45677 8999986 5899999999
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEc--CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDM--STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~--s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
...+.+-+. ..+..|+.|+.- ........+++.+...+.+..+.
T Consensus 101 ~~~h~~~~~-------~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~ 146 (444)
T 2ixa_A 101 WEWHHEHGV-------AAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLM 146 (444)
T ss_dssp GGGHHHHHH-------HHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred cHHHHHHHH-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 888766655 233455544432 23456677788777777776554
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-07 Score=81.79 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=79.4
Q ss_pred CeEEEEecChhhHHHHHHHHhC---------CCcEE-EEcCCcchhHHHHHC-CC-cccCCHHHHHh--hCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN---------GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~---------g~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvvii~vp~ 66 (291)
+||||||+|.||...+..+.+. +.+|+ ++|+++++++.+.++ |+ ..+++.+++++ +.|+|++|+|.
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~ 106 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN 106 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence 3899999999999999988764 23544 779999999888765 55 47789999886 57999999999
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEc--CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDM--STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~--s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+.+-+. . .+..|+.|+.- -.......+++.+...+.+..+.
T Consensus 107 ~~H~~~~~---~----al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 151 (412)
T 4gqa_A 107 HLHYTMAM---A----AIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTM 151 (412)
T ss_dssp GGHHHHHH---H----HHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHH---H----HHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeee
Confidence 88876665 2 23455554431 13356677777777666666554
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=6.4e-08 Score=84.61 Aligned_cols=110 Identities=13% Similarity=0.195 Sum_probs=80.0
Q ss_pred eEEEEecChhhHHHHHHHHhC--CCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHH---HHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAA---LSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~--g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~---~~v~ 74 (291)
||+|||+| +|...+..+.+. ++++. ++++++++++.+.++ |+..++|.++++++.|++++|+|+..+. .++.
T Consensus 9 rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~~~a 87 (372)
T 4gmf_A 9 RVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGTQLA 87 (372)
T ss_dssp EEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHHHHH
T ss_pred EEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHHHHH
Confidence 89999999 899999888764 56755 779999999888764 8998999999999999999999886552 1222
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
...+..|+.|+.-=-..+...+++.+...+.|+.+.-.
T Consensus 88 ------~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~v~ 125 (372)
T 4gmf_A 88 ------RHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYWIN 125 (372)
T ss_dssp ------HHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ------HHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEEEc
Confidence 12234555554333345677888888777888877643
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.54 E-value=4.3e-07 Score=78.61 Aligned_cols=109 Identities=19% Similarity=0.145 Sum_probs=79.6
Q ss_pred CeEEEEecC-hhhHHHHHHHHhC--CCcE-EEEcCCcchhHHHHHC-CC-cccCCHHHHHh--hCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLG-IMGKAISMNLLRN--GFKV-TVWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G-~mG~~la~~l~~~--g~~V-~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvvii~vp~~~~~~~ 72 (291)
+||||||+| .+|..++..|.+. +.++ .++|+++++++.+.+. |. ..+++.+++++ +.|+|++|+|+..+.+-
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~ 98 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPF 98 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHH
T ss_pred eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence 389999999 8999999999876 4565 5789999999887765 65 67889999986 58999999998777655
Q ss_pred HHhccCccccccCCCcEEEEcC--CCCHHHHHHHHHHHHhcCCcEE
Q 022834 73 VVFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s--~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+. ..+..|+.|+.-- +......+++.+...+.++.+.
T Consensus 99 ~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 137 (340)
T 1zh8_A 99 IE-------KALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVY 137 (340)
T ss_dssp HH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEE
T ss_pred HH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 54 2234555444321 2356677777777766666554
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-07 Score=79.92 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=60.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHH---CC------CcccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVA---HG------ATVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~---~g------~~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|||+|.+|..++..|+..|+ +|.++|+++++++.... +. ..+..+..+.+++||+||++++.+..
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~k 87 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK 87 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCCC
Confidence 589999999999999999999987 89999999877653221 12 11222335668899999999876531
Q ss_pred ---------------HHHHHhccCccccccCCCcEEEEcCC
Q 022834 70 ---------------ALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 70 ---------------~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
++++. +.+.+. .++..++..|+
T Consensus 88 ~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~viv~tN 124 (318)
T 1y6j_A 88 PGETRLDLAKKNVMIAKEVT---QNIMKY-YNHGVILVVSN 124 (318)
T ss_dssp ---CHHHHHHHHHHHHHHHH---HHHHHH-CCSCEEEECSS
T ss_pred CCcCHHHHHHhhHHHHHHHH---HHHHHh-CCCcEEEEecC
Confidence 34455 455555 46777776644
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-07 Score=80.03 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=64.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHH----HHH------CCCccc-CCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVA------HGATVG-GSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~------~g~~~~-~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..++..|+..|+ +|.++|+++++++. +.+ ....+. .+..+.+++||+||++.+.+
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 999999999999999999998886 89999999887652 221 123333 34567788999999998654
Q ss_pred H---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 A---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. .++++. +.+.+. .++.+++..||-
T Consensus 81 ~kpG~~R~dl~~~N~~i~~~i~---~~i~~~-~p~a~vivvtNP 120 (314)
T 3nep_X 81 RSPGMSRDDLLAKNTEIVGGVT---EQFVEG-SPDSTIIVVANP 120 (314)
T ss_dssp ------CHHHHHHHHHHHHHHH---HHHHTT-CTTCEEEECCSS
T ss_pred CCCCCCHHHHHHhhHHHHHHHH---HHHHHh-CCCcEEEecCCc
Confidence 2 123333 344444 467777877764
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-07 Score=81.08 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=65.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHH----HHHC------CCcccCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH------GATVGGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~~------g~~~~~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+|||+|.||.+++..|+..|+ +|.++|+++++++. +.+. ++.+..+..+.+++||+||++.+.+.
T Consensus 6 ~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p~ 85 (326)
T 3pqe_A 6 NKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGANQ 85 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccCC
Confidence 599999999999999999999887 89999999887765 3332 22333334567889999999985331
Q ss_pred ---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 ---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.++++. +.+.+. .++..++..||-
T Consensus 86 kpG~~R~dL~~~N~~Iv~~i~---~~I~~~-~p~a~vlvvtNP 124 (326)
T 3pqe_A 86 KPGETRLELVEKNLKIFKGIV---SEVMAS-GFDGIFLVATNP 124 (326)
T ss_dssp CTTCCHHHHHHHHHHHHHHHH---HHHHHT-TCCSEEEECSSS
T ss_pred CCCccHHHHHHHHHHHHHHHH---HHHHHh-cCCeEEEEcCCh
Confidence 133344 344443 367777777764
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.8e-07 Score=78.72 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=77.2
Q ss_pred CeEEEEecChhhHH-HHHHHHhC-CCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHhh--CCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--~dvvii~vp~~~~~~~v~~ 75 (291)
+||||||+|.||.. ++..+.+. +++|. ++|+++++++. ...+...+++.++++.+ .|+|++|+|...+.+-+.
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~- 85 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQ- 85 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-TCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHH-
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHH-
Confidence 37999999999997 77777765 67765 78999887651 11267778899999875 899999999988776655
Q ss_pred ccCccccccCCCcEE-EEcC-CCCHHHHHHHHHHHHhcCCcEE
Q 022834 76 DKGGVLEQICPGKGY-IDMS-TVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 76 ~~~~l~~~l~~~~~v-v~~s-~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+..|+.| +.-- +......+++.+...+.++.+.
T Consensus 86 ------~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (352)
T 3kux_A 86 ------SALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLS 122 (352)
T ss_dssp ------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEE
T ss_pred ------HHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 223455544 4322 3456777788777777766554
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-06 Score=77.57 Aligned_cols=108 Identities=11% Similarity=0.106 Sum_probs=76.0
Q ss_pred eEEEEecChhhHHHHHHHHh--------CCCcEE-EEcCCcchhHHHHHC-CC-cccCCHHHHHh--hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR--------NGFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~--------~g~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvvii~vp~~~ 68 (291)
||||||+|.||...+..+.. .+.+|+ ++|+++++++.+.++ |+ ..++|.+++++ +.|+|++|+|+..
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~~~ 106 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPNQF 106 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCGGG
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCChHH
Confidence 69999999999988877654 245654 779999999988765 65 47789999886 4799999999988
Q ss_pred HHHHHHhccCccccccCCCcEEEEc--CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDM--STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~--s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+.+-+. . .+..|+.|+.- -+......+++.+...+.+..+.
T Consensus 107 H~~~a~---~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~ 149 (393)
T 4fb5_A 107 HAEMAI---A----ALEAGKHVWCEKPMAPAYADAERMLATAERSGKVAA 149 (393)
T ss_dssp HHHHHH---H----HHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEE
T ss_pred HHHHHH---H----HHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCccc
Confidence 877666 2 23355554431 13355667777777766666543
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.6e-07 Score=68.86 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=72.3
Q ss_pred eEEEEec----ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~----G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
+|+|||+ |.+|..++..|.+.||+|+ +.++.. +.+ .|..++.+++++....|++++++|. ..+.+++
T Consensus 24 ~iaVVGas~~~g~~G~~~~~~l~~~G~~v~--~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv--- 94 (144)
T 2d59_A 24 KIALVGASPKPERDANIVMKYLLEHGYDVY--PVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYV--- 94 (144)
T ss_dssp EEEEETCCSCTTSHHHHHHHHHHHTTCEEE--EECTTC-SEE--TTEECBSSGGGCSSCCSEEEECSCH-HHHHHHH---
T ss_pred EEEEEccCCCCCchHHHHHHHHHHCCCEEE--EECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHH---
Confidence 6999999 7999999999999999854 444443 111 3788888999988889999999966 6667777
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
+++...- .+.+++. +... .+++.+...+.|+.++.
T Consensus 95 ~~~~~~g-i~~i~~~-~g~~---~~~l~~~a~~~Gi~vvG 129 (144)
T 2d59_A 95 EQAIKKG-AKVVWFQ-YNTY---NREASKKADEAGLIIVA 129 (144)
T ss_dssp HHHHHHT-CSEEEEC-TTCC---CHHHHHHHHHTTCEEEE
T ss_pred HHHHHcC-CCEEEEC-CCch---HHHHHHHHHHcCCEEEc
Confidence 4444432 2344443 2222 45666777778888774
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-07 Score=80.85 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=67.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-CCCcc------cCCHHHHHhhCCEEEEecCCHHH-HHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATV------GGSPAEVIKKCTITIGMLADPAA-ALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~------~~~~~~~~~~~dvvii~vp~~~~-~~~ 72 (291)
++|+|+|+|.+|..++..+...|.+|+++|+++++.+.+.+ .|... ..+..+.++.+|+||.|++.+.. ...
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~t~~ 248 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPK 248 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCCCcc
Confidence 37999999999999999999999999999999988877765 35432 22455677889999999854331 111
Q ss_pred HHhccCccccccCCCcEEEEcCC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
++. ++..+.++++.+|++++.
T Consensus 249 li~--~~~l~~mk~g~~iV~va~ 269 (377)
T 2vhw_A 249 LVS--NSLVAHMKPGAVLVDIAI 269 (377)
T ss_dssp CBC--HHHHTTSCTTCEEEEGGG
T ss_pred eec--HHHHhcCCCCcEEEEEec
Confidence 110 123344668889999873
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-07 Score=80.32 Aligned_cols=100 Identities=8% Similarity=0.116 Sum_probs=67.4
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcE-EEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKV-TVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+|||+|+||..++..|.+. +.++ .++|+++++ .+. .|+..+++.++++.++|+|++|+|...+.+.+.
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~---- 76 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIPEQA---- 76 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH----
T ss_pred CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHH----
Confidence 4899999999999999999876 4664 578888655 222 355556677777778999999998866655554
Q ss_pred ccccccCCCcEEEEcCCCC--HHHH-HHHHHHHHh
Q 022834 79 GVLEQICPGKGYIDMSTVD--HETS-IKISRAITS 110 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~--~~~~-~~~~~~~~~ 110 (291)
..+..|..++...... .... +++.+...+
T Consensus 77 ---~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~ 108 (320)
T 1f06_A 77 ---PKFAQFACTVDTYDNHRDIPRHRQVMNEAATA 108 (320)
T ss_dssp ---HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHH
T ss_pred ---HHHHCCCEEEECCCCcCCHHHHHHHHHHHHHh
Confidence 2344566666544432 2233 455554443
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=4.2e-07 Score=77.76 Aligned_cols=91 Identities=13% Similarity=0.186 Sum_probs=64.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHH----HHH------CCCcc--cCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE----LVA------HGATV--GGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~----l~~------~g~~~--~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||.+++..|+..|+ +|.++|+++++++. +.+ ....+ +.+. +.+++||+||++.+.+
T Consensus 8 ~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag~p 86 (324)
T 3gvi_A 8 NKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAGVP 86 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCSCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccCcC
Confidence 599999999999999999999999 99999999887642 211 12333 3454 7788999999997432
Q ss_pred H---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 A---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. .++++. +.+.+.- ++.+++..||-
T Consensus 87 ~k~G~~R~dl~~~N~~i~~~i~---~~i~~~~-p~a~iivvtNP 126 (324)
T 3gvi_A 87 RKPGMSRDDLLGINLKVMEQVG---AGIKKYA-PEAFVICITNP 126 (324)
T ss_dssp CC-----CHHHHHHHHHHHHHH---HHHHHHC-TTCEEEECCSS
T ss_pred CCCCCCHHHHHHhhHHHHHHHH---HHHHHHC-CCeEEEecCCC
Confidence 1 233444 4444443 67777777764
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.47 E-value=6.8e-07 Score=80.87 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=81.3
Q ss_pred CeEEEEec----ChhhHHHHHHHHhC--CCcEE-EEcCCcchhHHHHHC-CCc---ccCCHHHHHh--hCCEEEEecCCH
Q 022834 1 MEVGFLGL----GIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GAT---VGGSPAEVIK--KCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~----G~mG~~la~~l~~~--g~~V~-~~~r~~~~~~~l~~~-g~~---~~~~~~~~~~--~~dvvii~vp~~ 67 (291)
|||||||+ |.||..++..|.+. +++|+ ++|+++++++.+.+. |+. .+.+.+++++ +.|+|++|+|..
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~~ 119 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP 119 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCcH
Confidence 37999999 99999999999885 67754 789999998887764 654 7889999986 689999999988
Q ss_pred HHHHHHHhccCccccccCCC-------cEEEEc-CCCCHHHHHHHHHHHHhcC-CcEE
Q 022834 68 AAALSVVFDKGGVLEQICPG-------KGYIDM-STVDHETSIKISRAITSKG-GHFL 116 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~-------~~vv~~-s~~~~~~~~~~~~~~~~~~-~~~~ 116 (291)
.+.+-+. .. +..| .+++.- .+......+++.+...+.+ +.+.
T Consensus 120 ~H~~~~~---~a----l~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~~ 170 (479)
T 2nvw_A 120 EHYEVVK---NI----LEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTI 170 (479)
T ss_dssp HHHHHHH---HH----HHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEE
T ss_pred HHHHHHH---HH----HHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEE
Confidence 8766665 22 2234 356653 3445677788877776666 5543
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.47 E-value=4.8e-07 Score=81.20 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=51.1
Q ss_pred CeEEEEecChh--hHHHHHHHHhC----CCcEEEEcCCcchhHHHHH--------C----CCcccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIM--GKAISMNLLRN----GFKVTVWNRTLSKCDELVA--------H----GATVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~m--G~~la~~l~~~----g~~V~~~~r~~~~~~~l~~--------~----g~~~~~~~~~~~~~~dvvii 62 (291)
|||+|||+|.| |.+++..|+.. |++|++||+++++++.... . .+..+++..+++++||+||+
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VIi 83 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVIN 83 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEE
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEEE
Confidence 58999999997 57778888754 8999999999988765322 1 13335677788899999999
Q ss_pred ecCC
Q 022834 63 MLAD 66 (291)
Q Consensus 63 ~vp~ 66 (291)
++|.
T Consensus 84 aagv 87 (480)
T 1obb_A 84 TAMV 87 (480)
T ss_dssp CCCT
T ss_pred CCCc
Confidence 9965
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=98.46 E-value=5.8e-07 Score=78.07 Aligned_cols=107 Identities=14% Similarity=0.151 Sum_probs=75.2
Q ss_pred CeEEEEecChhhH-HHHHHHHhC-CCcEE-EEcCCcchhHHHHH----CCCcccCCHHHHHhh--CCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRN-GFKVT-VWNRTLSKCDELVA----HGATVGGSPAEVIKK--CTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~-g~~V~-~~~r~~~~~~~l~~----~g~~~~~~~~~~~~~--~dvvii~vp~~~~~~ 71 (291)
|||+|||+|.||. ..+..+.+. +++|. ++|++ +.+.+.+ .++..+.+.++++.+ .|+|++|+|+..+.+
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 80 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYD 80 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHH
T ss_pred eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHHH
Confidence 3899999999998 567767654 57765 77887 4445543 367888999999875 899999999987766
Q ss_pred HHHhccCccccccCCCcEEEEcC--CCCHHHHHHHHHHHHhcCCcEE
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s--~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
-+. ..+..|+.|+.-- .......+++.+...+.++.+.
T Consensus 81 ~~~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (349)
T 3i23_A 81 LAK-------QAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM 120 (349)
T ss_dssp HHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHH-------HHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 555 2234555544321 3356777788777777776554
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=77.91 Aligned_cols=110 Identities=21% Similarity=0.261 Sum_probs=74.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc----CCHHHH----HhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~~dvvii~vp~~~~~~~ 72 (291)
|+|.|+|+|.+|..+++.|.+.|++|+++|+++++++.+.+.|..+. .+.+-+ +.++|+||++++++.....
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~~ 84 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQ 84 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHHH
Confidence 67999999999999999999999999999999999999988876542 122211 3578999999988765555
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
++ .....+.++..|+-.+.. +.... .+.+.|+..+-.|
T Consensus 85 i~----~~ar~~~p~~~Iiara~~-~~~~~----~L~~~Gad~Vi~~ 122 (413)
T 3l9w_A 85 LT----EMVKEHFPHLQIIARARD-VDHYI----RLRQAGVEKPERE 122 (413)
T ss_dssp HH----HHHHHHCTTCEEEEEESS-HHHHH----HHHHTTCSSCEET
T ss_pred HH----HHHHHhCCCCeEEEEECC-HHHHH----HHHHCCCCEEECc
Confidence 55 223334354333333332 33333 3445566655444
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.45 E-value=3.3e-07 Score=82.31 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=51.4
Q ss_pred eEEEEecChh-hHHHHHHHHhC-----CCcEEEEcCCcchhHHHHH--------CC----CcccCCHHHHHhhCCEEEEe
Q 022834 2 EVGFLGLGIM-GKAISMNLLRN-----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIGM 63 (291)
Q Consensus 2 kI~iIG~G~m-G~~la~~l~~~-----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvvii~ 63 (291)
||+|||+|.+ |.+++..|+.+ +++|.+||+++++++...+ .+ +..+.+..+++++||+||++
T Consensus 30 KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VVia 109 (472)
T 1u8x_X 30 SIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMAH 109 (472)
T ss_dssp EEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEEEc
Confidence 8999999999 66688788877 6789999999987665322 11 23346777888999999999
Q ss_pred cCCH
Q 022834 64 LADP 67 (291)
Q Consensus 64 vp~~ 67 (291)
+|.+
T Consensus 110 ag~~ 113 (472)
T 1u8x_X 110 IRVG 113 (472)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 9763
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.44 E-value=5.9e-07 Score=78.33 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=75.4
Q ss_pred eEEEEecChhhHH-HHHHHHhC-CCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~ 75 (291)
||||||+|.||.. ++..+.+. +++|. ++|+++++.. ... +...+++.++++. +.|+|++|+|+..+.+-+.
T Consensus 7 rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~- 83 (358)
T 3gdo_A 7 KVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVK--RDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHTM- 83 (358)
T ss_dssp EEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHH--HHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHHH-
T ss_pred eEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHHH-
Confidence 7999999999996 67777664 67765 7799886632 222 6778889999987 6899999999988776655
Q ss_pred ccCccccccCCCcEEEEcC--CCCHHHHHHHHHHHHhcCCcEE
Q 022834 76 DKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s--~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+..|+.|+.-- +......+++.+...+.++.+.
T Consensus 84 ------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~ 120 (358)
T 3gdo_A 84 ------ACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLS 120 (358)
T ss_dssp ------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred ------HHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 2334555544321 3456677778777777666554
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.44 E-value=6.1e-07 Score=80.37 Aligned_cols=112 Identities=12% Similarity=0.115 Sum_probs=81.3
Q ss_pred eEEEEec----ChhhHHHHHHHHhC--CCcE-EEEcCCcchhHHHHHC-CCc---ccCCHHHHHh--hCCEEEEecCCHH
Q 022834 2 EVGFLGL----GIMGKAISMNLLRN--GFKV-TVWNRTLSKCDELVAH-GAT---VGGSPAEVIK--KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~----G~mG~~la~~l~~~--g~~V-~~~~r~~~~~~~l~~~-g~~---~~~~~~~~~~--~~dvvii~vp~~~ 68 (291)
||+|||+ |.||..++..|.+. ++++ .++|+++++++.+.+. |+. .+.+.+++++ +.|+|++|+|...
T Consensus 22 rvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 101 (438)
T 3btv_A 22 RVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVAS 101 (438)
T ss_dssp EEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHHH
T ss_pred EEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcHH
Confidence 7999999 99999999999886 6775 4789999998887764 654 7789999986 5899999999887
Q ss_pred HHHHHHhccCccccc--cCC-CcEEEEc-CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 69 AALSVVFDKGGVLEQ--ICP-GKGYIDM-STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~--l~~-~~~vv~~-s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+.+.+. ..+... ..+ ..+++.- .+......+++.+...+.++.+.
T Consensus 102 H~~~~~---~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 150 (438)
T 3btv_A 102 HYEVVM---PLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTI 150 (438)
T ss_dssp HHHHHH---HHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHH---HHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 766665 222211 000 2456652 34567777888877777666554
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.1e-07 Score=76.76 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=64.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHH----HHH------CCCccc-CCHHHHHhhCCEEEEecCCH-
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE----LVA------HGATVG-GSPAEVIKKCTITIGMLADP- 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~----l~~------~g~~~~-~~~~~~~~~~dvvii~vp~~- 67 (291)
|||+|||+|.||.+++..|+..|+ +|.++|+++++++. +.+ ....+. .+..+.+++||+||++.+.+
T Consensus 6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~p~ 85 (321)
T 3p7m_A 6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGVPR 85 (321)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCcCC
Confidence 599999999999999999999888 99999999887653 221 123332 23346788999999997432
Q ss_pred --------------HHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 --------------AAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 --------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++. +.+.+.. ++.+++..|+-
T Consensus 86 k~G~~R~dl~~~N~~i~~~i~---~~i~~~~-p~a~vivvtNP 124 (321)
T 3p7m_A 86 KPGMSRDDLLGINIKVMQTVG---EGIKHNC-PNAFVICITNP 124 (321)
T ss_dssp CTTCCHHHHHHHHHHHHHHHH---HHHHHHC-TTCEEEECCSS
T ss_pred CCCCCHHHHHHHhHHHHHHHH---HHHHHHC-CCcEEEEecCc
Confidence 1234444 4455444 67777777654
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-07 Score=82.23 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=70.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcccCCHHHHHh-hCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIK-KCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~-~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
++|+|+|+|+||..++..|.+.|++|+++|+++++++.+.+. +.... +.++++. +||+++.|... . ++. .
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~-~----~I~--~ 245 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALG-A----VLN--D 245 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCS-C----CBS--T
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchH-H----HhC--H
Confidence 479999999999999999999999999999999888877664 65554 4445444 89999988622 1 221 1
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
...+.+ ...+|+..++. |.+.++..+.+.+.|+.+
T Consensus 246 ~~~~~l-g~~iV~e~An~-p~t~~ea~~~L~~~Gi~~ 280 (364)
T 1leh_A 246 FTIPQL-KAKVIAGSADN-QLKDPRHGKYLHELGIVY 280 (364)
T ss_dssp THHHHC-CCSEECCSCSC-CBSSHHHHHHHHHHTCEE
T ss_pred HHHHhC-CCcEEEeCCCC-CcccHHHHHHHHhCCCEE
Confidence 122333 33555555544 433334556677777644
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.5e-07 Score=79.23 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=70.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+++|||+|.+|..++..+...|.+|+++++++.+.......|..+. +.+++++.+|+|++++++.. ++. .+..
T Consensus 249 TVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv-~LeElL~~ADIVv~atgt~~----lI~--~e~l 321 (464)
T 3n58_A 249 VAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVV-TLDDAASTADIVVTTTGNKD----VIT--IDHM 321 (464)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC-CHHHHGGGCSEEEECCSSSS----SBC--HHHH
T ss_pred EEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceec-cHHHHHhhCCEEEECCCCcc----ccC--HHHH
Confidence 7999999999999999999999999999999876655556677654 78999999999999875421 220 1233
Q ss_pred cccCCCcEEEEcCCCCH
Q 022834 82 EQICPGKGYIDMSTVDH 98 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~ 98 (291)
..++++.++|+++.+..
T Consensus 322 ~~MK~GAILINvGRgdv 338 (464)
T 3n58_A 322 RKMKDMCIVGNIGHFDN 338 (464)
T ss_dssp HHSCTTEEEEECSSSTT
T ss_pred hcCCCCeEEEEcCCCCc
Confidence 45678999999887643
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.6e-07 Score=81.15 Aligned_cols=90 Identities=21% Similarity=0.155 Sum_probs=70.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC-c
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG-G 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~-~ 79 (291)
.+++|+|+|.+|..++..+...|.+|+++++++.+.......|... .+.+++++.+|+|++|.... .++ . +
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~atgt~----~lI---~~e 292 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITCTGNK----NVV---TRE 292 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCS----CSB---CHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEECCCCc----ccC---CHH
Confidence 3799999999999999999999999999999987666555667654 47899999999999985321 222 1 3
Q ss_pred cccccCCCcEEEEcCCCCH
Q 022834 80 VLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~ 98 (291)
....++++.++++++.+.+
T Consensus 293 ~l~~MK~gailINvgrg~~ 311 (435)
T 3gvp_A 293 HLDRMKNSCIVCNMGHSNT 311 (435)
T ss_dssp HHHHSCTTEEEEECSSTTT
T ss_pred HHHhcCCCcEEEEecCCCc
Confidence 3445678999999987754
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-07 Score=78.32 Aligned_cols=110 Identities=17% Similarity=0.172 Sum_probs=76.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHH---HHHhc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAAL---SVVFD 76 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~---~v~~~ 76 (291)
++.|||+|.+|.+++..|.+.|. +|++++|+.++++.+.+. +.....+.. ..++|+||-|+|....-. +..
T Consensus 121 ~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~~-- 196 (271)
T 1npy_A 121 KVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMDL-- 196 (271)
T ss_dssp CEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTSC--
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCCC--
Confidence 68999999999999999999996 799999999999888754 433322222 357999999998654211 111
Q ss_pred cCccc-cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 77 KGGVL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 77 ~~~l~-~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.+. ..++++.+++|+... |... .+.+...+.|+.+++..
T Consensus 197 --~~~~~~l~~~~~v~DlvY~-P~~T-~ll~~A~~~G~~~i~Gl 236 (271)
T 1npy_A 197 --AFPKAFIDNASVAFDVVAM-PVET-PFIRYAQARGKQTISGA 236 (271)
T ss_dssp --SSCHHHHHHCSEEEECCCS-SSSC-HHHHHHHHTTCEEECHH
T ss_pred --CCCHHHcCCCCEEEEeecC-CCCC-HHHHHHHHCCCEEECCH
Confidence 111 234567899998764 3222 34455667787776555
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.4e-07 Score=80.16 Aligned_cols=94 Identities=22% Similarity=0.280 Sum_probs=65.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-CCCcc------cCCHHHHHhhCCEEEEecCCHHH-HHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATV------GGSPAEVIKKCTITIGMLADPAA-ALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~------~~~~~~~~~~~dvvii~vp~~~~-~~~ 72 (291)
++|+|+|+|.+|..++..+...|++|+++|+++++.+.+.+ .|..+ ..+..+.++.+|+||.|++.+.. ...
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~ 246 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPK 246 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------C
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccch
Confidence 47999999999999999999999999999999988877765 35432 12345667789999999975431 111
Q ss_pred HHhccCccccccCCCcEEEEcCCC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
++. +...+.++++..||+++..
T Consensus 247 li~--~~~l~~mk~gg~iV~v~~~ 268 (369)
T 2eez_A 247 LVT--RDMLSLMKEGAVIVDVAVD 268 (369)
T ss_dssp CSC--HHHHTTSCTTCEEEECC--
T ss_pred hHH--HHHHHhhcCCCEEEEEecC
Confidence 110 2233445678899988754
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.2e-07 Score=81.05 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=66.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC---------------------------CHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG---------------------------SPAEVI 54 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~---------------------------~~~~~~ 54 (291)
+|+|||+|.+|...+..+...|.+|+++|+++++.+.+.+.|..... +..+.+
T Consensus 174 ~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~ 253 (401)
T 1x13_A 174 KVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQA 253 (401)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999988887777765432 245667
Q ss_pred hhCCEEEEe--cCCHHHHHHHHhccCccccccCCCcEEEEcCC
Q 022834 55 KKCTITIGM--LADPAAALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 55 ~~~dvvii~--vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
..+|+||.| +|... ...++ . ++....++++.+|+|++.
T Consensus 254 ~~aDvVI~~~~~pg~~-ap~li-~-~~~l~~mk~g~vIVdva~ 293 (401)
T 1x13_A 254 KEVDIIVTTALIPGKP-APKLI-T-REMVDSMKAGSVIVDLAA 293 (401)
T ss_dssp HHCSEEEECCCCTTSC-CCCCB-C-HHHHHTSCTTCEEEETTG
T ss_pred CCCCEEEECCccCCCC-CCeee-C-HHHHhcCCCCcEEEEEcC
Confidence 789999999 44211 10111 0 122344568899999874
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=8.5e-07 Score=75.91 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=63.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHH----HH------CCCcccCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL----VA------HGATVGGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l----~~------~g~~~~~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+|||+|.+|..++..|+..|+ +|.++|+++++++.. .+ ....+..+..+.+++||+||++++.+.
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~~ 86 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAAQ 86 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCCC
Confidence 589999999999999999998884 899999998766532 11 122233345667889999999985432
Q ss_pred ---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 ---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.++++. +.+.+. .++..++..|+-
T Consensus 87 ~~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~viv~tNP 125 (317)
T 3d0o_A 87 KPGETRLDLVSKNLKIFKSIV---GEVMAS-KFDGIFLVATNP 125 (317)
T ss_dssp CTTCCHHHHHHHHHHHHHHHH---HHHHHT-TCCSEEEECSSS
T ss_pred CCCCcHHHHHHHHHHHHHHHH---HHHHHh-CCCcEEEEecCc
Confidence 233444 444444 467777776543
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.39 E-value=6.4e-07 Score=78.24 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=75.2
Q ss_pred eEEEEecChhhHH-HHHHHHhC-CCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHhh--CCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKK--CTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~--~dvvii~vp~~~~~~~v~~ 75 (291)
||||||+|.||.. .+..|.+. +++|. ++|++++++. .+. +...+.+.++++.+ .|+|++|+|...+.+-+.
T Consensus 7 rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~- 83 (362)
T 3fhl_A 7 KTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYAG- 83 (362)
T ss_dssp EEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHHH-
T ss_pred EEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHH-
Confidence 7999999999997 77777765 67765 7799987743 122 56778899999876 899999999988766555
Q ss_pred ccCccccccCCCcEE-EEc-CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 76 DKGGVLEQICPGKGY-IDM-STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 76 ~~~~l~~~l~~~~~v-v~~-s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+..|+.| +.- -+......+++.+...+.++.+.
T Consensus 84 ------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (362)
T 3fhl_A 84 ------MALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLS 120 (362)
T ss_dssp ------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred ------HHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 223355544 432 13456777778777766666554
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=6.1e-07 Score=76.79 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=61.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHH----HC------CCcccCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----AH------GATVGGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~----~~------g~~~~~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+|||+|.||.+++..|+..|. +|.++|+++++.+... +. ...+..+..+.+++||+||++.|.+.
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~~ 86 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQ 86 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCCC
Confidence 589999999999999999988774 8999999987555321 11 12222334566889999999975432
Q ss_pred ---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 ---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.+.++. +.+.+.. ++..++..|+-
T Consensus 87 ~~g~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~~iv~tNP 125 (316)
T 1ldn_A 87 KPGETRLDLVDKNIAIFRSIV---ESVMASG-FQGLFLVATNP 125 (316)
T ss_dssp CTTTCSGGGHHHHHHHHHHHH---HHHHHHT-CCSEEEECSSS
T ss_pred CCCCCHHHHHHcChHHHHHHH---HHHHHHC-CCCEEEEeCCc
Confidence 233344 3444443 66666666653
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=66.67 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=51.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCc-chhHHHH---HCCCccc----CCH---HHH-HhhCCEEEEecCCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELV---AHGATVG----GSP---AEV-IKKCTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l~---~~g~~~~----~~~---~~~-~~~~dvvii~vp~~~~ 69 (291)
+|.|+|+|.+|..++..|.+.|++|+++++++ ++++.+. ..|..+. .+. .++ ++++|+||++++++..
T Consensus 5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~ 84 (153)
T 1id1_A 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD 84 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCChHH
Confidence 79999999999999999999999999999974 5555444 3344321 122 223 5679999999977653
Q ss_pred H
Q 022834 70 A 70 (291)
Q Consensus 70 ~ 70 (291)
-
T Consensus 85 n 85 (153)
T 1id1_A 85 N 85 (153)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-07 Score=79.05 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=74.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-C----CcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G----ATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g----~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
++.|+|+|.+|.+++..|.+.|. +|++++|++++++.+.+. + +.. .+.+++..++|+||.|+|....-+...+
T Consensus 128 ~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~-~~~~~l~~~aDiIInaTp~gm~~~~~~l 206 (281)
T 3o8q_A 128 TILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKA-QAFEQLKQSYDVIINSTSASLDGELPAI 206 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEE-EEGGGCCSCEEEEEECSCCCC----CSC
T ss_pred EEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeE-eeHHHhcCCCCEEEEcCcCCCCCCCCCC
Confidence 78999999999999999999996 899999999998887654 1 122 2444544689999999987643221111
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc-EEEc
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLEA 118 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~-~~~~ 118 (291)
+ ...++++.+++|+... |.... +.+...++|+. .++.
T Consensus 207 --~--~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~~G 244 (281)
T 3o8q_A 207 --D--PVIFSSRSVCYDMMYG-KGYTV-FNQWARQHGCAQAIDG 244 (281)
T ss_dssp --C--GGGEEEEEEEEESCCC-SSCCH-HHHHHHHTTCSEEECT
T ss_pred --C--HHHhCcCCEEEEecCC-CccCH-HHHHHHHCCCCEEECc
Confidence 1 1245678899999876 32222 33455666775 5443
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.4e-06 Score=73.22 Aligned_cols=108 Identities=6% Similarity=-0.062 Sum_probs=77.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEE-EEcCCcchhHHHHHC--CCcccCCHHHHH-----------hhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAH--GATVGGSPAEVI-----------KKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~-~~~r~~~~~~~l~~~--g~~~~~~~~~~~-----------~~~dvvii~vp 65 (291)
|||||||+ |.||..++..|.+.+.++. ++|+++++. .+.+. +...+++.++++ .+.|+|++|+|
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP 82 (318)
T 3oa2_A 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSP 82 (318)
T ss_dssp CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSC
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCC
Confidence 59999999 7899999999998887754 779988764 23332 567788888876 45899999999
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcC--CCCHHHHHHHHHHHHhcCCcEE
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s--~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+..+.+-+. ..+..|+.|+.-- ...+...+++.+...+.+..+.
T Consensus 83 ~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 128 (318)
T 3oa2_A 83 NYLHYPHIA-------AGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLY 128 (318)
T ss_dssp GGGHHHHHH-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred cHHHHHHHH-------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 988766555 2233555444321 3456777788777777666554
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=3e-07 Score=78.57 Aligned_cols=91 Identities=9% Similarity=0.059 Sum_probs=65.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHH----HC-------CCcccCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----AH-------GATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~----~~-------g~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..++..|+..|+ +|.++|+++++++... +. .+....+.++ +++||+||++.+.+
T Consensus 22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG~p 100 (330)
T 3ldh_A 22 NKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAGAR 100 (330)
T ss_dssp CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCSCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCCCC
Confidence 699999999999999999999886 8999999988765422 11 1222345555 78999999996433
Q ss_pred H---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 A---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. .++++. +.+.+. .++..++..||-
T Consensus 101 ~kpG~tR~dll~~N~~I~k~i~---~~I~k~-~P~a~ilvvtNP 140 (330)
T 3ldh_A 101 QQEGESRLNLVQRNVNIFKFII---PNIVKH-SPDCLKELHPEL 140 (330)
T ss_dssp CCSSCCTTGGGHHHHHHHHHHH---HHHHHH-CTTCEEEECSSS
T ss_pred CCCCCCHHHHHHhhHHHHHHHH---HHHHhh-CCCceEEeCCCc
Confidence 1 234454 455555 577778877764
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-06 Score=75.24 Aligned_cols=92 Identities=11% Similarity=0.141 Sum_probs=63.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHH---C------CCcccCCHHHHHhhCCEEEEecCCHH-
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVA---H------GATVGGSPAEVIKKCTITIGMLADPA- 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~~dvvii~vp~~~- 68 (291)
|||+|||+|.+|..++..|+..++ ++.++|+++++++.... + ...+..+..+.+++||+||++.+.+.
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~~ 85 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQK 85 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence 599999999999999999998876 89999999887764221 1 22233345667889999999986542
Q ss_pred --------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 --------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 --------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.++++. +.+.+. .++..++..||-
T Consensus 86 ~g~~R~dl~~~n~~i~~~i~---~~i~~~-~p~a~iiv~tNP 123 (318)
T 1ez4_A 86 PGESRLDLVNKNLNILSSIV---KPVVDS-GFDGIFLVAANP 123 (318)
T ss_dssp -------CHHHHHHHHHHHH---HHHHHT-TCCSEEEECSSS
T ss_pred CCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCeEEEEeCCc
Confidence 233333 344444 467777776554
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.5e-06 Score=72.90 Aligned_cols=108 Identities=8% Similarity=-0.008 Sum_probs=77.5
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEE-EEcCCcchhHHHHHC--CCcccCCHHHHH----------hhCCEEEEecCC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAH--GATVGGSPAEVI----------KKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~-~~~r~~~~~~~l~~~--g~~~~~~~~~~~----------~~~dvvii~vp~ 66 (291)
+||||||+ |.+|...+..+.+.+.++. ++|+++++.. +.+. +...+.+.++++ .+.|+|++|+|+
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~ 82 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGL-VDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPN 82 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGG-GGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCG
T ss_pred eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHH-HHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCc
Confidence 58999999 7899999999998887754 7799888742 3332 567788888887 468999999999
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEc--CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDM--STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~--s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+.+-+. ..+..|+.|+.- -.......+++.+...+.+..+.
T Consensus 83 ~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 127 (312)
T 3o9z_A 83 HLHYPQIR-------MALRLGANALSEKPLVLWPEEIARLKELEARTGRRVY 127 (312)
T ss_dssp GGHHHHHH-------HHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEE
T ss_pred hhhHHHHH-------HHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 88766555 223455555431 13456777778777777676553
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.36 E-value=7.9e-07 Score=79.46 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=51.3
Q ss_pred CeEEEEecChh-hHHHHHHHHhC-----CCcEEEEcCCc--chhHHHHH--------CC----CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIM-GKAISMNLLRN-----GFKVTVWNRTL--SKCDELVA--------HG----ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~m-G~~la~~l~~~-----g~~V~~~~r~~--~~~~~l~~--------~g----~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+|++ |.+++..|+.+ +++|.+||+++ ++++...+ .+ +..+.+..+++++||+|
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~V 87 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 87 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCEE
Confidence 58999999999 88888888873 56899999998 77654221 12 22345777888999999
Q ss_pred EEecCCH
Q 022834 61 IGMLADP 67 (291)
Q Consensus 61 ii~vp~~ 67 (291)
|+++|.+
T Consensus 88 Vitagv~ 94 (450)
T 1s6y_A 88 TTQFRVG 94 (450)
T ss_dssp EECCCTT
T ss_pred EEcCCCC
Confidence 9999753
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.3e-07 Score=79.83 Aligned_cols=64 Identities=11% Similarity=0.225 Sum_probs=51.8
Q ss_pred CeEEEEecChh--hHHHHHHHHh----CCCcEEEEcCCcchhHHHHHC---------CCcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIM--GKAISMNLLR----NGFKVTVWNRTLSKCDELVAH---------GATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~m--G~~la~~l~~----~g~~V~~~~r~~~~~~~l~~~---------g~~~~~~~~~~~~~~dvvii~vp 65 (291)
|||+|||+|+| |..++..|+. .| +|++||+++++++..... .+..+.+.++++++||+||++++
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~air 84 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISIL 84 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEeccc
Confidence 48999999997 6899988886 46 999999999877654321 24456788899999999999995
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=98.33 E-value=6.9e-07 Score=76.16 Aligned_cols=92 Identities=20% Similarity=0.184 Sum_probs=64.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHH---C------CCcccCCHHHHHhhCCEEEEecCCHH-
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVA---H------GATVGGSPAEVIKKCTITIGMLADPA- 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~~dvvii~vp~~~- 68 (291)
|||+|||+|.+|.+++..|+..+ .++.++|+++++++.... + ...+..+..+.+++||+||++.+.+.
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~ 80 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR 80 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence 89999999999999999999887 589999999877764221 1 12222234567889999999975432
Q ss_pred --------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 --------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 --------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.++++. +.+.+. .++..++..||-
T Consensus 81 ~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~iiv~tNP 118 (310)
T 2xxj_A 81 PGETRLQLLDRNAQVFAQVV---PRVLEA-APEAVLLVATNP 118 (310)
T ss_dssp TTCCHHHHHHHHHHHHHHHH---HHHHHH-CTTCEEEECSSS
T ss_pred CCcCHHHHHHhhHHHHHHHH---HHHHHH-CCCcEEEEecCc
Confidence 233444 344444 466777777654
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.33 E-value=9.8e-07 Score=74.90 Aligned_cols=91 Identities=10% Similarity=0.094 Sum_probs=62.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcch---hHHHHHC---CCcccCCHHHHHhhCCEEEEecCCH-----
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSK---CDELVAH---GATVGGSPAEVIKKCTITIGMLADP----- 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~---~~~l~~~---g~~~~~~~~~~~~~~dvvii~vp~~----- 67 (291)
|||+|||+|.||..++..|+.+|+ +|.++|++++. ...+... .+..+.+. +.+++||+||++...+
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~t 93 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQS 93 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----CC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCCC
Confidence 589999999999999999999998 99999998752 1122221 23444566 6678999999996221
Q ss_pred ---------HHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 ---------AAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ---------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.-++++. +++.+.. ++.+++..||.
T Consensus 94 R~dl~~~n~~i~~~i~---~~i~~~~-p~a~iiv~sNP 127 (303)
T 2i6t_A 94 YLDVVQSNVDMFRALV---PALGHYS-QHSVLLVASQP 127 (303)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHT-TTCEEEECSSS
T ss_pred HHHHHHHHHHHHHHHH---HHHHHhC-CCeEEEEcCCh
Confidence 1234455 5555554 77787777774
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-06 Score=75.29 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=78.1
Q ss_pred CeEEEEe-cChhhHH-HH----HHHHhCC-CcE----------EEEcCCcchhHHHHH-CCC-cccCCHHHHHhh--CCE
Q 022834 1 MEVGFLG-LGIMGKA-IS----MNLLRNG-FKV----------TVWNRTLSKCDELVA-HGA-TVGGSPAEVIKK--CTI 59 (291)
Q Consensus 1 mkI~iIG-~G~mG~~-la----~~l~~~g-~~V----------~~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~~--~dv 59 (291)
|||+||| +|.||.. .+ ..+.+.+ ..+ .++|+++++++.+.+ .|+ ..+++.++++++ .|+
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~ 86 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM 86 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence 4899999 9999998 77 6666543 222 389999999988875 476 467899999865 899
Q ss_pred EEEecCCHHHHHHHHhccCccccccCCCcEEEEcC--CCCHHHHHHHHHHHHhcCCcEE
Q 022834 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 60 vii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s--~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
|++|+|...+.+-+. ..+..|+.|+.-- .......+++.+...+.++.+.
T Consensus 87 V~i~tp~~~h~~~~~-------~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~ 138 (383)
T 3oqb_A 87 FFDAATTQARPGLLT-------QAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKHG 138 (383)
T ss_dssp EEECSCSSSSHHHHH-------HHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred EEECCCchHHHHHHH-------HHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 999999877765544 2344566655321 3456677778777777666543
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=71.90 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=73.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcE-EEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKV-TVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+++|+|+||..+++. . ++++ .+|+ ++...+ |+..+++.++++.++|+|+.|- .++.+++..
T Consensus 13 ~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel---gv~a~~d~d~lla~pD~VVe~A-~~~av~e~~----- 77 (253)
T 1j5p_A 13 MTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI---PGVVRLDEFQVPSDVSTVVECA-SPEAVKEYS----- 77 (253)
T ss_dssp CEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC---SSSEECSSCCCCTTCCEEEECS-CHHHHHHHH-----
T ss_pred ceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc---CceeeCCHHHHhhCCCEEEECC-CHHHHHHHH-----
Confidence 899999999999999998 4 7885 4667 444433 7777788888878999999998 556666544
Q ss_pred cccccCCCcEEEEcCCC---CHHHHHHHHHHHHhcCCcE
Q 022834 80 VLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGHF 115 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~~~~~~~ 115 (291)
.+.|..|.-++..|.+ .+...+++.+...+.+..+
T Consensus 78 -~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l 115 (253)
T 1j5p_A 78 -LQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARV 115 (253)
T ss_dssp -HHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEE
T ss_pred -HHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeE
Confidence 3456788888888865 4555666666665556554
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.2e-06 Score=72.80 Aligned_cols=104 Identities=10% Similarity=0.134 Sum_probs=75.2
Q ss_pred CeEEEEecChhhH-HHHHHHHhC-CCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHhh---CCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---~dvvii~vp~~~~~~~v~ 74 (291)
|||||||+|.||. .++..|.+. +.+|. ++|+++++ .|+..+++.++++++ .|+|++|+|...+.+-+.
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~ 99 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAY 99 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHH
T ss_pred ceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence 3899999999998 788888875 56754 67888764 377888899998865 899999998877765554
Q ss_pred hccCccccccCCCcEEEEcC--CCCHHHHHHHHHHHHhcCCcEEE
Q 022834 75 FDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s--~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
..+..|+.|+.-- .......+++.+...+.++.+..
T Consensus 100 -------~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 137 (330)
T 4ew6_A 100 -------KALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFA 137 (330)
T ss_dssp -------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred -------HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEE
Confidence 2334555555322 23566777787777777775553
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.8e-07 Score=77.26 Aligned_cols=111 Identities=21% Similarity=0.207 Sum_probs=71.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CC--cc-cCCHHHHHh-hCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GA--TV-GGSPAEVIK-KCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~--~~-~~~~~~~~~-~~dvvii~vp~~~~~~~v~~ 75 (291)
+++.|+|+|.||.+++..|.+.|++|++++|++++++.+.+. +. .+ ..+.+++.+ ++|+||.|+|.+..- .+.
T Consensus 120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~-~~~- 197 (272)
T 1p77_A 120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSG-GTA- 197 (272)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC---------
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCCC-CCC-
Confidence 479999999999999999999999999999999988887643 11 11 123333323 799999999875431 211
Q ss_pred ccCccc-cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc-EEE
Q 022834 76 DKGGVL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLE 117 (291)
Q Consensus 76 ~~~~l~-~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~-~~~ 117 (291)
.+. ..++++.+++|++........ +.+...+.|+. +++
T Consensus 198 ---~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~ 237 (272)
T 1p77_A 198 ---SVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSD 237 (272)
T ss_dssp ---CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEEC
T ss_pred ---CCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeC
Confidence 121 224467899999875433123 33445566765 553
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-06 Score=74.93 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=51.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHH----HC-----CCcccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----AH-----GATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~----~~-----g~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|.||..++..|+..|+ ++.++|+++++++... +. ...+..+..+.+++||+||++.+.
T Consensus 10 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~ 86 (326)
T 3vku_A 10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence 699999999999999999999887 8999999988776332 11 233344445678899999999743
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-06 Score=74.00 Aligned_cols=92 Identities=11% Similarity=0.139 Sum_probs=63.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHH---C------CCcccCCHHHHHhhCCEEEEecCCHH-
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVA---H------GATVGGSPAEVIKKCTITIGMLADPA- 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~---~------g~~~~~~~~~~~~~~dvvii~vp~~~- 68 (291)
|||+|||+|.+|..++..|+..++ ++.++|+++++++.... + ...+..+..+.+++||+||++.+.+.
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~k 89 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQK 89 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC--
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCCC
Confidence 699999999999999999998775 79999999887764322 1 12233345667899999999985432
Q ss_pred --------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 --------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 --------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.++++. +.+.+. .++..++..||-
T Consensus 90 ~g~~R~dl~~~n~~i~~~i~---~~i~~~-~p~a~iiv~tNP 127 (326)
T 2zqz_A 90 PGETRLDLVNKNLKILKSIV---DPIVDS-GFNGIFLVAANP 127 (326)
T ss_dssp ---CHHHHHHHHHHHHHHHH---HHHHHH-TCCSEEEECSSS
T ss_pred CCCCHHHHHHHHHHHHHHHH---HHHHHH-CCCeEEEEeCCc
Confidence 133333 344444 467777777554
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.31 E-value=9e-07 Score=75.46 Aligned_cols=92 Identities=11% Similarity=0.119 Sum_probs=62.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCC--cchhHHHH----H------CCCccc-CCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT--LSKCDELV----A------HGATVG-GSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~--~~~~~~l~----~------~g~~~~-~~~~~~~~~~dvvii~vp~ 66 (291)
+||+|||+|.||..++..|+.+|+ +|+++|++ +++.+... + ....+. .+..+.+++||+||++.+.
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaag~ 88 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITAGI 88 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeCCC
Confidence 389999999999999999999999 99999998 44443211 1 122222 2224567899999999743
Q ss_pred HH---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 67 PA---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 67 ~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+. .++++. +.+.+. .++..++..||-
T Consensus 89 p~kpg~~R~dl~~~N~~i~~~i~---~~i~~~-~p~a~vlvvsNP 129 (315)
T 3tl2_A 89 ARKPGMSRDDLVATNSKIMKSIT---RDIAKH-SPNAIIVVLTNP 129 (315)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHH---HHHHHH-CTTCEEEECCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCeEEEECCCh
Confidence 31 233444 444444 367777777764
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-06 Score=72.41 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=72.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CC--cc-cCCHHHHH-hhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GA--TV-GGSPAEVI-KKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~--~~-~~~~~~~~-~~~dvvii~vp~~~~~~~v~~ 75 (291)
+++.|+|+|.||.+++..|++.|++|++++|++++++.+.+. +. .+ ..+.+++. .++|+||.|+|.... ..+
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~-~~~-- 196 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GDI-- 196 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TCC--
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC-CCC--
Confidence 478999999999999999999999999999999988877643 21 11 12333333 479999999987543 111
Q ss_pred ccCccc-cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 76 DKGGVL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 76 ~~~~l~-~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
..+. ..++++.+++|++... .... +.+...+.|+.
T Consensus 197 --~~i~~~~l~~~~~v~D~~y~p-~~t~-~~~~a~~~G~~ 232 (271)
T 1nyt_A 197 --PAIPSSLIHPGIYCYDMFYQK-GKTP-FLAWCEQRGSK 232 (271)
T ss_dssp --CCCCGGGCCTTCEEEESCCCS-SCCH-HHHHHHHTTCC
T ss_pred --CCCCHHHcCCCCEEEEeccCC-cCCH-HHHHHHHcCCC
Confidence 1121 2356788999988763 2222 33445556654
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=6.7e-07 Score=79.22 Aligned_cols=68 Identities=26% Similarity=0.389 Sum_probs=55.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHH-CCCccc--CCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA-HGATVG--GSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~~dvvii~vp~~~ 68 (291)
++|+|||+|.||..++..|...|. +|++++|++++++.+.+ .|.... .+..+.+.++|+||.|+|.+.
T Consensus 168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~ 239 (404)
T 1gpj_A 168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH 239 (404)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCC
Confidence 479999999999999999999998 89999999988765554 355432 356677789999999997654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=9.5e-07 Score=77.72 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=65.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc--CC---------------------------HH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GS---------------------------PA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~---------------------------~~ 51 (291)
.+|+|+|+|.+|...+..+...|.+|+++|+++++.+.+.+.|.... +. ..
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~ 252 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL 252 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHH
Confidence 37999999999999999999999999999999988888777776543 11 45
Q ss_pred HHHhhCCEEEEec--CCHHHHHHHHhccCccccccCCCcEEEEcCC
Q 022834 52 EVIKKCTITIGML--ADPAAALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 52 ~~~~~~dvvii~v--p~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
+.++.+|+||.|+ |.... ..++ . ++....++++.+|++++.
T Consensus 253 ~~~~~aDvVi~~~~~pg~~~-~~li-~-~~~l~~mk~g~vivdva~ 295 (384)
T 1l7d_A 253 KELVKTDIAITTALIPGKPA-PVLI-T-EEMVTKMKPGSVIIDLAV 295 (384)
T ss_dssp HHHTTCSEEEECCCCTTSCC-CCCS-C-HHHHTTSCTTCEEEETTG
T ss_pred HHhCCCCEEEECCccCCCCC-Ceee-C-HHHHhcCCCCCEEEEEec
Confidence 6667899999988 32111 0111 0 122234568889998873
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-06 Score=74.52 Aligned_cols=106 Identities=10% Similarity=-0.040 Sum_probs=73.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEE-EEcCCc-chhHHHHH----CC--CcccCCHHHHHhh--CCEEEEecCCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTL-SKCDELVA----HG--ATVGGSPAEVIKK--CTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~-~~~r~~-~~~~~l~~----~g--~~~~~~~~~~~~~--~dvvii~vp~~~~~ 70 (291)
|||||||+|.+|..++..| ..+.+|+ ++|+++ ++.+.+.+ .| ...+++.++++++ .|+|++|+|...+.
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~ 81 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLNG 81 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHHH
T ss_pred eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchHH
Confidence 4899999999999888877 6667766 679887 45555443 24 4678899998864 89999999988776
Q ss_pred HHHHhccCccccccCCCcEEEEc--CCCCHHHHHHHHHHHHhcCCc
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDM--STVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~--s~~~~~~~~~~~~~~~~~~~~ 114 (291)
+-+. ..+..|+.|+.- -.......+++.+...+.+..
T Consensus 82 ~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 120 (337)
T 3ip3_A 82 KILL-------EALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNE 120 (337)
T ss_dssp HHHH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 6555 223455544431 123556777777777666654
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-06 Score=75.45 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=73.8
Q ss_pred eEEEEecChhhHHHHHHHHhCC--------CcEE-EEcCCcchhHHHHHC-CC-cccCCHHHHHh--hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG--------FKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g--------~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvvii~vp~~~ 68 (291)
||||||+|.||...+..+.+.. .+|. ++|+++++++.+.++ |+ ..++|.+++++ +.|+|++|+|+..
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~~ 87 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGDS 87 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGGG
T ss_pred cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHH
Confidence 6999999999999988887532 2544 779999999888765 65 46789999885 4799999999988
Q ss_pred HHHHHHhccCccccccCCCcEEE-E-cCCCCHHHHHHHHHH---HHhcCCcE
Q 022834 69 AALSVVFDKGGVLEQICPGKGYI-D-MSTVDHETSIKISRA---ITSKGGHF 115 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv-~-~s~~~~~~~~~~~~~---~~~~~~~~ 115 (291)
|.+-+. . .+..|+.|+ . --.......+++.+. ..+.++.+
T Consensus 88 H~~~~~---~----al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~ 132 (390)
T 4h3v_A 88 HAEIAI---A----ALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRS 132 (390)
T ss_dssp HHHHHH---H----HHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHH---H----HHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCce
Confidence 877666 2 233555444 3 112345566666443 33345443
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.26 E-value=3e-06 Score=73.02 Aligned_cols=66 Identities=8% Similarity=0.123 Sum_probs=51.9
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC--CcEEEEcCCcchhHH----HHHC-----CCcccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSKCDE----LVAH-----GATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+ |.+|..++..++..| .+|.++|+++++++. +.+. .+....+..+.+++||+||++...
T Consensus 9 ~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG~ 86 (343)
T 3fi9_A 9 EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGA 86 (343)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC-
T ss_pred CEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccCC
Confidence 59999998 999999999999888 489999999877654 3321 233446777888999999999743
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-06 Score=72.30 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=72.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchh-HHHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~~ 76 (291)
+||+|+|+ |.||..+++.+.+.|+++ ++..++.+. +. ..|++++.+.+++.+ ++|++++|+|...+ .+++
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~g~~~-V~~V~p~~~g~~--~~G~~vy~sl~el~~~~~~D~viI~tP~~~~-~~~~-- 81 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAYGTKM-VGGVTPGKGGTT--HLGLPVFNTVREAVAATGATASVIYVPAPFC-KDSI-- 81 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCGGGH-HHHH--
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeE-EEEeCCCcccce--eCCeeccCCHHHHhhcCCCCEEEEecCHHHH-HHHH--
Confidence 48999999 999999999999888883 333333322 11 247888899999987 79999999987554 4444
Q ss_pred cCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEE
Q 022834 77 KGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFL 116 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~ 116 (291)
.++... .-+.+|..+.+. ....+++.+...+.++.++
T Consensus 82 -~ea~~~--Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~li 119 (288)
T 2nu8_A 82 -LEAIDA--GIKLIITITEGIPTLDMLTVKVKLDEAGVRMI 119 (288)
T ss_dssp -HHHHHT--TCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred -HHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 233321 113445556654 4455677777777777665
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.7e-06 Score=76.47 Aligned_cols=108 Identities=20% Similarity=0.256 Sum_probs=75.7
Q ss_pred eEEEEecChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHC-CCcc----cC---CHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-GATV----GG---SPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~-g~~~----~~---~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
+|.|+|+|.+|.+++..|++. |++|++++|++++++.+.+. ++.. .. +..++++++|+||.|+|...+ ..
T Consensus 25 ~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~-~~ 103 (467)
T 2axq_A 25 NVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFH-PN 103 (467)
T ss_dssp EEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGH-HH
T ss_pred EEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhh-HH
Confidence 799999999999999999987 78999999999998888754 3321 11 234556789999999976433 22
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
+. . ..+..+..+++.+...|.. ..+.+...+.|+.++.
T Consensus 104 v~---~---a~l~~g~~vvd~~~~~p~~-~~Ll~~Ak~aGv~~i~ 141 (467)
T 2axq_A 104 VV---K---SAIRTKTDVVTSSYISPAL-RELEPEIVKAGITVMN 141 (467)
T ss_dssp HH---H---HHHHHTCEEEECSCCCHHH-HHHHHHHHHHTCEEEC
T ss_pred HH---H---HHHhcCCEEEEeecCCHHH-HHHHHHHHHcCCEEEe
Confidence 33 1 1234567788876655543 4455556666776663
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.9e-06 Score=71.31 Aligned_cols=112 Identities=18% Similarity=0.127 Sum_probs=74.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC------CCc--ccC--CHHHHHhhCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH------GAT--VGG--SPAEVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~------g~~--~~~--~~~~~~~~~dvvii~vp~~~~~ 70 (291)
++.|+|+|.+|.+++..|++.|. +|++++|++++++.+.+. +.. ..+ +..+.+.++|+||-|+|-...-
T Consensus 129 ~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm~~ 208 (283)
T 3jyo_A 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPA 208 (283)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTTSTT
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCCCCC
Confidence 68899999999999999999998 699999999998877542 112 222 6677788999999999753211
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
..-. .--...++++.+++|+.-....+ . +.+...++|+..++.
T Consensus 209 ~~~~---pi~~~~l~~~~~v~DlvY~P~~T-~-ll~~A~~~G~~~~~G 251 (283)
T 3jyo_A 209 HPGT---AFDVSCLTKDHWVGDVVYMPIET-E-LLKAARALGCETLDG 251 (283)
T ss_dssp SCSC---SSCGGGCCTTCEEEECCCSSSSC-H-HHHHHHHHTCCEECT
T ss_pred CCCC---CCCHHHhCCCCEEEEecCCCCCC-H-HHHHHHHCcCeEeCc
Confidence 1000 00123466788899976543221 2 223344557665543
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.9e-06 Score=72.48 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=61.5
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC--CcEEEEcCCcchhH--HHHHCC----Ccc---cCCHHHHHhhCCEEEEecCCH-
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSKCD--ELVAHG----ATV---GGSPAEVIKKCTITIGMLADP- 67 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~~--~l~~~g----~~~---~~~~~~~~~~~dvvii~vp~~- 67 (291)
|||+|||+ |.+|..++..|+..| ++|.++|+++.+.. .+.+.. +.. .++.+++++++|+||++.+.+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~ 80 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence 89999998 999999999999988 78999999862211 121211 111 135677889999999997432
Q ss_pred --------------HHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 --------------AAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 --------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++. +.+.+.. ++..++..||-
T Consensus 81 ~~g~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~viv~sNP 119 (314)
T 1mld_A 81 KPGMTRDDLFNTNATIVATLT---AACAQHC-PDAMICIISNP 119 (314)
T ss_dssp CTTCCGGGGHHHHHHHHHHHH---HHHHHHC-TTSEEEECSSC
T ss_pred CCCCcHHHHHHHHHHHHHHHH---HHHHhhC-CCeEEEEECCC
Confidence 1244444 4444444 56666666553
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.2e-06 Score=71.50 Aligned_cols=108 Identities=13% Similarity=0.128 Sum_probs=73.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-C---CcccCCHHHHH-hhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G---ATVGGSPAEVI-KKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g---~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~ 75 (291)
++.|+|+|.+|.+++..|.+.|. +|++++|++++++.+.+. + +.. .+.+++. .++|+||-|+|....-+.
T Consensus 122 ~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~-~~~~~l~~~~~DivInaTp~gm~~~~--- 197 (272)
T 3pwz_A 122 RVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRI-SRYEALEGQSFDIVVNATSASLTADL--- 197 (272)
T ss_dssp EEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEE-ECSGGGTTCCCSEEEECSSGGGGTCC---
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeE-eeHHHhcccCCCEEEECCCCCCCCCC---
Confidence 68999999999999999999995 899999999999888764 2 122 1233332 579999999976543111
Q ss_pred ccCcc-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc-EEE
Q 022834 76 DKGGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLE 117 (291)
Q Consensus 76 ~~~~l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~-~~~ 117 (291)
..+ ...++++.+++|+.-. |.... +.+...++|+. .++
T Consensus 198 --~~i~~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~~ 237 (272)
T 3pwz_A 198 --PPLPADVLGEAALAYELAYG-KGLTP-FLRLAREQGQARLAD 237 (272)
T ss_dssp --CCCCGGGGTTCSEEEESSCS-CCSCH-HHHHHHHHSCCEEEC
T ss_pred --CCCCHHHhCcCCEEEEeecC-CCCCH-HHHHHHHCCCCEEEC
Confidence 011 1346688999998765 32222 33345566765 443
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.20 E-value=3.3e-06 Score=75.75 Aligned_cols=109 Identities=24% Similarity=0.260 Sum_probs=73.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-C-Ccc----cC---CHHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-G-ATV----GG---SPAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g-~~~----~~---~~~~~~~~~dvvii~vp~~~~~~ 71 (291)
++|.|+|+|.+|..++..|++.|++|++++|++++++.+.+. + ... .. +..++++++|+||.|+|...+.
T Consensus 4 k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~~- 82 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA- 82 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CHH-
T ss_pred CEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccch-
Confidence 369999999999999999999999999999998888776543 1 111 12 2335667899999999764332
Q ss_pred HHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
.+. . ..+..+..+++.+...+.. ..+.+...+.|+.++.
T Consensus 83 ~i~---~---a~l~~g~~vvd~~~~~~~~-~~l~~aA~~aGv~~i~ 121 (450)
T 1ff9_A 83 TVI---K---SAIRQKKHVVTTSYVSPAM-MELDQAAKDAGITVMN 121 (450)
T ss_dssp HHH---H---HHHHHTCEEEESSCCCHHH-HHTHHHHHHTTCEEEC
T ss_pred HHH---H---HHHhCCCeEEEeecccHHH-HHHHHHHHHCCCeEEe
Confidence 222 1 1233456777776555543 4555566666776653
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.4e-06 Score=72.76 Aligned_cols=90 Identities=14% Similarity=0.132 Sum_probs=63.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHH----H------CCCcc--cCCHHHHHhhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----A------HGATV--GGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~------~g~~~--~~~~~~~~~~~dvvii~vp~~~ 68 (291)
||+|||+|.||..++..|+..|+ +|.++|+++++++... + ....+ +.+. +.+++||+||++.+.+.
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~ 79 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR 79 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence 79999999999999999998887 6999999987765421 1 12222 2454 67889999999964432
Q ss_pred ---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 ---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.++++. +.+.+.. ++..++..||-
T Consensus 80 k~G~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~iiv~tNP 118 (308)
T 2d4a_B 80 KPGMTREQLLEANANTMADLA---EKIKAYA-KDAIVVITTNP 118 (308)
T ss_dssp CSSCCTHHHHHHHHHHHHHHH---HHHHHHC-TTCEEEECCSS
T ss_pred CCCCcHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEeCCc
Confidence 144555 4555543 66666767663
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=6e-06 Score=69.90 Aligned_cols=107 Identities=12% Similarity=0.103 Sum_probs=73.9
Q ss_pred CeEEEEecChhhHHHHHHHHh----CCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLR----NGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~----~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v 73 (291)
|||+|||+|.||...+..+.+ .+.+++ +++++... + ..|+. ..+.+++++ +.|+|++|+|+..+.+.+
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a-~---~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~~ 82 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG-S---LDEVR-QISLEDALRSQEIDVAYICSESSSHEDYI 82 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC-E---ETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHHH
T ss_pred ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH-H---HcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHHH
Confidence 489999999999999998865 345654 67876321 1 12444 478999886 579999999988876665
Q ss_pred HhccCccccccCCCc-EEEEc-CCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 74 VFDKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~-~vv~~-s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
. ..+..|+ +++.- .+......+++.+...+.++.+..+.
T Consensus 83 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~ 123 (294)
T 1lc0_A 83 R-------QFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEH 123 (294)
T ss_dssp H-------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred H-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 5 2334555 44542 34467778888887777777665444
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.15 E-value=4e-06 Score=71.85 Aligned_cols=91 Identities=12% Similarity=0.136 Sum_probs=63.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHH----HHC-----C--CcccCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL----VAH-----G--ATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l----~~~-----g--~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..++..|+.+|+ ++.++|++.++++.. .+. . +....+.+ .+++||+||++...+
T Consensus 20 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~aG~~ 98 (331)
T 4aj2_A 20 NKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITAGAR 98 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECCSCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEccCCC
Confidence 699999999999999999999887 899999998776642 221 1 11234554 578999999986432
Q ss_pred H---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 A---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. -++++. +.+.+. .++..++..||-
T Consensus 99 ~kpG~tR~dL~~~N~~I~~~i~---~~i~~~-~p~a~vlvvtNP 138 (331)
T 4aj2_A 99 QQEGESRLNLVQRNVNIFKFII---PNVVKY-SPQCKLLIVSNP 138 (331)
T ss_dssp CCTTCCGGGGHHHHHHHHHHHH---HHHHHH-CTTCEEEECSSS
T ss_pred CCCCccHHHHHHHHHHHHHHHH---HHHHHH-CCCeEEEEecCh
Confidence 1 233444 444554 477788877764
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.8e-06 Score=71.33 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=69.5
Q ss_pred CeEEEEecChhhHHHHHHHHhC---------CCcEE-EEcCCcchhHH------HHH--CCCcccC--CHHHHHhh--CC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN---------GFKVT-VWNRTLSKCDE------LVA--HGATVGG--SPAEVIKK--CT 58 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~---------g~~V~-~~~r~~~~~~~------l~~--~g~~~~~--~~~~~~~~--~d 58 (291)
|||+|||+|.||..++..|.+. +.+|. ++|+++++.+. +.. ....+++ +.++++++ .|
T Consensus 3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD 82 (327)
T 3do5_A 3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD 82 (327)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence 4899999999999999999875 45554 56887654321 211 1223444 88888864 89
Q ss_pred EEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHH--HHHHHHHHHHhcCCcEE
Q 022834 59 ITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHE--TSIKISRAITSKGGHFL 116 (291)
Q Consensus 59 vvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~--~~~~~~~~~~~~~~~~~ 116 (291)
+|+.|+|+..+-.+.. +-....+..|+.|+..+. .|- ..+++.+...+.++.+.
T Consensus 83 vVv~~tp~~~h~~~a~---~~~~~aL~aGkhVv~~NK-kpla~~~~eL~~~A~~~g~~~~ 138 (327)
T 3do5_A 83 VLIEASVTRVDGGEGV---NYIREALKRGKHVVTSNK-GPLVAEFHGLMSLAERNGVRLM 138 (327)
T ss_dssp EEEECCCCC----CHH---HHHHHHHTTTCEEEECCS-HHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCcccchhHH---HHHHHHHHCCCeEEecCc-hhhHHHHHHHHHHHHhhCCcEE
Confidence 9999998865511122 222345678888775433 232 34556565666677665
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=98.14 E-value=7e-06 Score=67.00 Aligned_cols=107 Identities=11% Similarity=0.058 Sum_probs=70.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc----CCHHH---H-HhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAE---V-IKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~---~-~~~~dvvii~vp~~~~~~~ 72 (291)
++|.|+|+|.+|..++..|.+.|+ |+++++++++++.+. .|..+. .+.+. + ++++|.+|+++|++.....
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~ 87 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIH 87 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHHH
Confidence 479999999999999999999999 999999999888877 664431 22222 2 4578999999987644333
Q ss_pred HHhccCccccccCCC-cEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 73 VVFDKGGVLEQICPG-KGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 73 v~~~~~~l~~~l~~~-~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
+. .....+.++ .+++..++. ...+ .+...|+..+-.|
T Consensus 88 ~~----~~a~~~~~~~~iia~~~~~--~~~~----~l~~~G~~~vi~p 125 (234)
T 2aef_A 88 CI----LGIRKIDESVRIIAEAERY--ENIE----QLRMAGADQVISP 125 (234)
T ss_dssp HH----HHHHHHCSSSEEEEECSSG--GGHH----HHHHHTCSEEECH
T ss_pred HH----HHHHHHCCCCeEEEEECCH--hHHH----HHHHCCCCEEECH
Confidence 33 223334444 566655433 2222 2334466665444
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3.6e-06 Score=73.36 Aligned_cols=95 Identities=16% Similarity=0.241 Sum_probs=65.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc---c----CCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV---G----GSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~---~----~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
.+|.|+|+|.+|...+..+...|.+|+++||++++++.+.+.+... . .+..+.+..+|+||.|++.+......
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~ 247 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPI 247 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCe
Confidence 3799999999999999999999999999999999988876554221 1 12345566899999999654310000
Q ss_pred HhccCccccccCCCcEEEEcCCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+.. +...+.++++..++|++..
T Consensus 248 li~-~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 248 LVP-ASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp CBC-HHHHTTSCTTCEEEETTCT
T ss_pred ecC-HHHHhhCCCCCEEEEEecC
Confidence 000 1122345678889988754
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=9.8e-06 Score=68.20 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=73.0
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~~ 76 (291)
+||+|+|+ |+||..+++.+.+.|+++. .+++.....+ ..|..++.+.+++.+ .+|++++++|. ....+++
T Consensus 8 ~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~---i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~-- 81 (288)
T 1oi7_A 8 TRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGME---VLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAA-- 81 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHH--
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCce---ECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHH--
Confidence 48999998 9999999999998899833 4454321011 247888999999988 89999999966 5556666
Q ss_pred cCccccccCCCcEEEEcCCCCHH-HHHHHHHHHHhcCCcEE
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHE-TSIKISRAITSKGGHFL 116 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~-~~~~~~~~~~~~~~~~~ 116 (291)
+++... .-+.+|..+++.+. ..+++.+...+.++.++
T Consensus 82 -~ea~~~--Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vi 119 (288)
T 1oi7_A 82 -LEAAHA--GIPLIVLITEGIPTLDMVRAVEEIKALGSRLI 119 (288)
T ss_dssp -HHHHHT--TCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred -HHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 344332 11334555666543 45667777777777655
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.1e-05 Score=63.40 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=60.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHh-hCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|+|+ |.||..++..+.+. ++++. +++++ +++++++. ++|++|-++ .+..+.+.+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT-~p~a~~~~~-- 62 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFT-HPDVVMGNL-- 62 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECS-CTTTHHHHH--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEcc-ChHHHHHHH--
Confidence 89999996 99999999998865 89876 55664 34555554 789999777 444555554
Q ss_pred cCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhc-CCcEEEcc
Q 022834 77 KGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSK-GGHFLEAP 119 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~-~~~~~~~~ 119 (291)
.. .+..+..+|..+++ ..+..+.+.+...+. ++.++-+|
T Consensus 63 -~~---a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~ 103 (245)
T 1p9l_A 63 -EF---LIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAP 103 (245)
T ss_dssp -HH---HHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECS
T ss_pred -HH---HHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEEC
Confidence 22 23355555655665 344444454443322 44444333
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.5e-06 Score=70.94 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=61.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHH----HHH----CC--Ccc--cCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVA----HG--ATV--GGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~----~g--~~~--~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|.+|..++..|..++. ++.++|+++++++- +.+ .+ ..+ ..+. +.+++||+|+++...
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~-~~~~~aDvVvitAG~ 79 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH-HHhCCCCEEEEecCC
Confidence 999999999999999999988764 79999998766542 222 11 111 2233 567899999998632
Q ss_pred H---------------HHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 67 P---------------AAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 67 ~---------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+ .-++++. +++.+.- ++.+++..||-
T Consensus 80 prkpGmtR~dLl~~Na~I~~~i~---~~i~~~~-p~aivlvvsNP 120 (294)
T 2x0j_A 80 ARKPGMTRLDLAHKNAGIIKDIA---KKIVENA-PESKILVVTNP 120 (294)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHHH---HHHHTTS-TTCEEEECSSS
T ss_pred CCCCCCchHHHHHHHHHHHHHHH---HHHHhcC-CceEEEEecCc
Confidence 2 1234444 4555543 66777777765
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.08 E-value=6.5e-06 Score=72.85 Aligned_cols=109 Identities=21% Similarity=0.302 Sum_probs=70.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC---cEEEEcCCcchhHHHHHC-------CCcc-------cCCHHHHHhh--CCEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCDELVAH-------GATV-------GGSPAEVIKK--CTITI 61 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~---~V~~~~r~~~~~~~l~~~-------g~~~-------~~~~~~~~~~--~dvvi 61 (291)
|||+|+|+|.+|..++..|++.|. +|.+++|++++++.+.+. .+.. ..+.++++++ +|+||
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi 81 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL 81 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence 489999999999999999999883 899999999998876542 1211 1234456666 89999
Q ss_pred EecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHH--------HHHHHHHHHHhcCCcEE
Q 022834 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHE--------TSIKISRAITSKGGHFL 116 (291)
Q Consensus 62 i~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~--------~~~~~~~~~~~~~~~~~ 116 (291)
.|+|...+ ..+. +. .+..+..++|++...+. ....+.+...+.|+.++
T Consensus 82 n~ag~~~~-~~v~---~a---~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i 137 (405)
T 4ina_A 82 NIALPYQD-LTIM---EA---CLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMAL 137 (405)
T ss_dssp ECSCGGGH-HHHH---HH---HHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEE
T ss_pred ECCCcccC-hHHH---HH---HHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEE
Confidence 99975432 3333 11 23345566765443221 12244445555566555
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.07 E-value=9.7e-06 Score=69.58 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=48.7
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCC--CcEEEEcCCcchh--HHHHHCCC--cc-----cCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNG--FKVTVWNRTLSKC--DELVAHGA--TV-----GGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g--~~V~~~~r~~~~~--~~l~~~g~--~~-----~~~~~~~~~~~dvvii~vp 65 (291)
|||+|+| +|.+|..++..|+..| ++|+++|++++.. ..+.+... .+ .++..++++++|+||++.+
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag 85 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG 85 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 6999999 7999999999999988 7899999877622 12333221 11 1245677899999999985
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.2e-05 Score=66.83 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=65.2
Q ss_pred CeEEEEe-cChhhHHHHHHHHhC-CCcEEE-EcCCcchh-----HHHH--HCCCcccCCHHHHHhhCCEEEEecCCHHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRN-GFKVTV-WNRTLSKC-----DELV--AHGATVGGSPAEVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~-g~~V~~-~~r~~~~~-----~~l~--~~g~~~~~~~~~~~~~~dvvii~vp~~~~~ 70 (291)
|||+|+| +|+||..+++.+.+. ++++.. ++++++.. ..+. ..|+.+.++.++++.++|+||-++ .+...
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT-~p~a~ 86 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFT-LPEGT 86 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECS-CHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcC-CHHHH
Confidence 4899999 899999999998864 567654 68864321 1111 126777889999999999999999 45555
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHH
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKIS 105 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~ 105 (291)
.+.+ ..+ +..+..+|..+++. +...+++.
T Consensus 87 ~~~~---~~a---l~~G~~vVigTTG~s~~~~~~L~ 116 (272)
T 4f3y_A 87 LVHL---DAA---LRHDVKLVIGTTGFSEPQKAQLR 116 (272)
T ss_dssp HHHH---HHH---HHHTCEEEECCCCCCHHHHHHHH
T ss_pred HHHH---HHH---HHcCCCEEEECCCCCHHHHHHHH
Confidence 5555 222 34556666666664 33333343
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-06 Score=72.70 Aligned_cols=87 Identities=13% Similarity=0.038 Sum_probs=61.5
Q ss_pred eEEEEecChh-hHHHHHHHHhCCCcEEEEcCCcchhH----HHHHCCCcc-----c--CCHHHHHhhCCEEEEecCCHHH
Q 022834 2 EVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKCD----ELVAHGATV-----G--GSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~G~m-G~~la~~l~~~g~~V~~~~r~~~~~~----~l~~~g~~~-----~--~~~~~~~~~~dvvii~vp~~~~ 69 (291)
++.|||.|.| |..++..|...|.+|++++|+..+.. .+...-... + .++.+.++++|+||.+++.+..
T Consensus 179 ~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~~ 258 (320)
T 1edz_A 179 KCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENY 258 (320)
T ss_dssp EEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCTTC
T ss_pred EEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECCCCCcc
Confidence 7899999986 99999999999999999999844322 221111111 1 4567888999999999976431
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
++ . ...++++.+|||++..
T Consensus 259 ---vI---~--~e~vk~GavVIDVgi~ 277 (320)
T 1edz_A 259 ---KF---P--TEYIKEGAVCINFACT 277 (320)
T ss_dssp ---CB---C--TTTSCTTEEEEECSSS
T ss_pred ---ee---C--HHHcCCCeEEEEcCCC
Confidence 12 1 1235788999999775
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=98.03 E-value=1.3e-05 Score=66.20 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=59.0
Q ss_pred CeEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.++.|||.|. +|..++..|.+.|.+|++++++ +.++.+.++++|+||.+++.+.- + .
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~p~~----I---~- 208 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGRPGF----L---N- 208 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSCTTC----B---C-
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCCCcc----c---c-
Confidence 3789999986 8999999999999999999864 25777889999999999987432 2 1
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||++..
T Consensus 209 -~~~vk~GavVIDvgi~ 224 (276)
T 3ngx_A 209 -REMVTPGSVVIDVGIN 224 (276)
T ss_dssp -GGGCCTTCEEEECCCE
T ss_pred -HhhccCCcEEEEeccC
Confidence 1346789999998765
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1e-05 Score=72.29 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=68.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+++|+|+|.+|..++..|+..|.+|+++++++.+.......+..+ .+.+++...+|+++.++.....+.. ...
T Consensus 267 tVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG~~~vl~~------e~l 339 (488)
T 3ond_A 267 VAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTGNKDIIML------DHM 339 (488)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSSCSCSBCH------HHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCCChhhhhH------HHH
Confidence 688999999999999999999999999999998887777777654 4677888899999988754332222 123
Q ss_pred cccCCCcEEEEcCCC
Q 022834 82 EQICPGKGYIDMSTV 96 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~ 96 (291)
..++++.+|++.+..
T Consensus 340 ~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 340 KKMKNNAIVCNIGHF 354 (488)
T ss_dssp TTSCTTEEEEESSST
T ss_pred HhcCCCeEEEEcCCC
Confidence 445678899988765
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.7e-05 Score=70.46 Aligned_cols=114 Identities=27% Similarity=0.381 Sum_probs=75.9
Q ss_pred eEEEEecChhhHHHHHHHHh----------CCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCC-H
Q 022834 2 EVGFLGLGIMGKAISMNLLR----------NGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLAD-P 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~----------~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~-~ 67 (291)
||+|||+|.||..++..|.+ .+.+|. ++++++++.+.+. .+..++++.+++++ +.|+|++|+|. .
T Consensus 12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~tp~~~ 90 (444)
T 3mtj_A 12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELIGGLE 90 (444)
T ss_dssp EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECCCSST
T ss_pred cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcCCCch
Confidence 79999999999999988764 234444 6799988776663 35677889999886 47999999985 4
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEE-EcccCCC
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFL-EAPVSGS 123 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 123 (291)
.+.+-+. ..+..|+.|+..... .....+++.+...+.++.+. .+.+.++
T Consensus 91 ~h~~~~~-------~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~g 141 (444)
T 3mtj_A 91 PARELVM-------QAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGG 141 (444)
T ss_dssp THHHHHH-------HHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred HHHHHHH-------HHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCC
Confidence 4433333 345577777743221 12234556666666788775 4444433
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.2e-06 Score=76.08 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=53.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcc----cCCHH---HH-HhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV----GGSPA---EV-IKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~----~~~~~---~~-~~~~dvvii~vp~~~ 68 (291)
|||-|+|+|.+|..+++.|.+.||+|++.|+++++++.+.+. ++.+ .++++ ++ +++||+++.+++++.
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De 80 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE 80 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence 899999999999999999999999999999999999988754 4332 12222 22 357999888886643
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=1.7e-05 Score=68.26 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=54.2
Q ss_pred eEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHH-CC------------------CcccCCHHHHHhhCCEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-HG------------------ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~g------------------~~~~~~~~~~~~~~dvv 60 (291)
||||+|+|.||..+++.|.+. +.++. +.|++++.+..+.+ .| +.+..+.++++.++|+|
T Consensus 4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV 83 (334)
T 2czc_A 4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII 83 (334)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEE
Confidence 899999999999999999875 35654 56887777665543 23 24456788888899999
Q ss_pred EEecCCHHHHHHH
Q 022834 61 IGMLADPAAALSV 73 (291)
Q Consensus 61 ii~vp~~~~~~~v 73 (291)
++|+|...+.+..
T Consensus 84 ~~aTp~~~h~~~a 96 (334)
T 2czc_A 84 VDATPGGIGAKNK 96 (334)
T ss_dssp EECCSTTHHHHHH
T ss_pred EECCCccccHHHH
Confidence 9999987654433
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.2e-05 Score=66.31 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=72.7
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchh-HHHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~~~ 77 (291)
++.|+|+ |.||..+.+.+.+.|++ .++..+|.+. +. -.|++++.+.+++.+ ++|++++++|. ....+++
T Consensus 15 ~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~Dv~ii~vp~-~~~~~~v--- 87 (294)
T 2yv1_A 15 KAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQN--VHGVPVFDTVKEAVKETDANASVIFVPA-PFAKDAV--- 87 (294)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHH---
T ss_pred EEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCEEEEccCH-HHHHHHH---
Confidence 6788899 99999999999999998 5555545432 11 147888999999988 89999999966 4555555
Q ss_pred CccccccCCCcEEEEcCCCCH-HHHHHHHHHHHhcCCcEE
Q 022834 78 GGVLEQICPGKGYIDMSTVDH-ETSIKISRAITSKGGHFL 116 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~-~~~~~~~~~~~~~~~~~~ 116 (291)
+++... .-+.+|..+++.+ ...+++.+...+.++.++
T Consensus 88 ~ea~~~--Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi 125 (294)
T 2yv1_A 88 FEAIDA--GIELIVVITEHIPVHDTMEFVNYAEDVGVKII 125 (294)
T ss_dssp HHHHHT--TCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 334332 1133455566644 345677777777777655
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.5e-06 Score=70.57 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=70.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCC-CcccCCHHHHHhhCCEEEEecCCHHHHH-HHHhccC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHG-ATVGGSPAEVIKKCTITIGMLADPAAAL-SVVFDKG 78 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g-~~~~~~~~~~~~~~dvvii~vp~~~~~~-~v~~~~~ 78 (291)
++.|+|+|.+|.+++..|.+.|. +|++++|++++++.+.+.- .....+..+ + ++|+||-|+|-...-. +-. .
T Consensus 124 ~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~---p 198 (282)
T 3fbt_A 124 ICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGES---P 198 (282)
T ss_dssp EEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCC---S
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccC---C
Confidence 68999999999999999999998 8999999999988876532 111112223 3 7999999997532110 000 0
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
--...++++.+++|+.-....+ .+.+...++|+..++.
T Consensus 199 i~~~~l~~~~~v~DlvY~P~~T--~ll~~A~~~G~~~~~G 236 (282)
T 3fbt_A 199 VDKEVVAKFSSAVDLIYNPVET--LFLKYARESGVKAVNG 236 (282)
T ss_dssp SCHHHHTTCSEEEESCCSSSSC--HHHHHHHHTTCEEECS
T ss_pred CCHHHcCCCCEEEEEeeCCCCC--HHHHHHHHCcCeEeCc
Confidence 0112356788999986443221 2333445667666543
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=67.75 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=60.4
Q ss_pred eEEEEecChhhHHHHHHHHh--CCCcE-EEEcCCcch-hHHHH-HCCCcc-cCCHHHHHh-----hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR--NGFKV-TVWNRTLSK-CDELV-AHGATV-GGSPAEVIK-----KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~--~g~~V-~~~~r~~~~-~~~l~-~~g~~~-~~~~~~~~~-----~~dvvii~vp~~~~~ 70 (291)
||+|||+|.+|..++..+.+ .+.++ .++|+++++ .+.+. ..|... .++.+++++ +.|+|++|+|...+.
T Consensus 6 rVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~~h~ 85 (312)
T 1nvm_B 6 KVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAHV 85 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChHHHH
Confidence 79999999999999999965 34554 467999887 55554 446653 445666653 579999999865554
Q ss_pred HHHHhccCccccccCCCcEEEEcCCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+-+. ..... ++|+.|++.+..
T Consensus 86 ~~a~----~al~a-~~Gk~Vi~ekp~ 106 (312)
T 1nvm_B 86 QNEA----LLRQA-KPGIRLIDLTPA 106 (312)
T ss_dssp HHHH----HHHHH-CTTCEEEECSTT
T ss_pred HHHH----HHHHh-CCCCEEEEcCcc
Confidence 4433 22221 137888876653
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=66.44 Aligned_cols=72 Identities=22% Similarity=0.332 Sum_probs=57.4
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHH--HHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPA--EVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~--~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
++.|||.|. +|..++..|.+.|.+|+++++... ++. +.++++|+||.+++.+.. + .
T Consensus 167 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p~~----I---~ 225 (300)
T 4a26_A 167 RAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQPGY----V---K 225 (300)
T ss_dssp EEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCTTC----B---C
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCCCCC----C---c
Confidence 689999987 799999999999999999987432 344 788999999999987432 2 1
Q ss_pred ccccccCCCcEEEEcCCC
Q 022834 79 GVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~ 96 (291)
..+++++.+|||++..
T Consensus 226 --~~~vk~GavVIDvgi~ 241 (300)
T 4a26_A 226 --GEWIKEGAAVVDVGTT 241 (300)
T ss_dssp --GGGSCTTCEEEECCCE
T ss_pred --HHhcCCCcEEEEEecc
Confidence 1346789999998765
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=5.7e-06 Score=69.08 Aligned_cols=89 Identities=24% Similarity=0.271 Sum_probs=58.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHh-CCCcEE-EEcCCcchh--HHH------HHCCCcccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLR-NGFKVT-VWNRTLSKC--DEL------VAHGATVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~-~g~~V~-~~~r~~~~~--~~l------~~~g~~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|+|+ |.||..++..+.+ .|++++ ++++++++. +.+ ...++.+.++.++++.++|+||-++ .+..
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft-~p~~ 84 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT-RPEG 84 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS-CHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC-ChHH
Confidence 68999998 9999999998774 578876 778876431 111 1124455667777777899999676 4444
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
..+.+ .. .+..+..+|..+++
T Consensus 85 ~~~~~---~~---a~~~G~~vVigTtG 105 (273)
T 1dih_A 85 TLNHL---AF---CRQHGKGMVIGTTG 105 (273)
T ss_dssp HHHHH---HH---HHHTTCEEEECCCC
T ss_pred HHHHH---HH---HHhCCCCEEEECCC
Confidence 55554 22 23455556655554
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.9e-05 Score=64.91 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=66.8
Q ss_pred CeEEEEe-cChhhHHHHHHHHhC-CCcEE-EEcCCcch-----hHHHH---HCCCcccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRN-GFKVT-VWNRTLSK-----CDELV---AHGATVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~-g~~V~-~~~r~~~~-----~~~l~---~~g~~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|+| +|+||..+++.+.+. ++++. ++++++.. +..+. ..|+.+++++++++.++|++|-++ .+..
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT-~p~a 100 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFS-QPQA 100 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECS-CHHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcC-CHHH
Confidence 4899999 999999999998754 66755 55886432 11222 237788899999999999999888 4455
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHH
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRA 107 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~ 107 (291)
..+.+ . ..+..+..+|..+++. +...+++.+.
T Consensus 101 ~~~~~---~---~~l~~Gv~vViGTTG~~~e~~~~L~~a 133 (288)
T 3ijp_A 101 SVLYA---N---YAAQKSLIHIIGTTGFSKTEEAQIADF 133 (288)
T ss_dssp HHHHH---H---HHHHHTCEEEECCCCCCHHHHHHHHHH
T ss_pred HHHHH---H---HHHHcCCCEEEECCCCCHHHHHHHHHH
Confidence 54444 2 2234566677666664 3344444443
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.91 E-value=5.3e-06 Score=69.98 Aligned_cols=110 Identities=12% Similarity=0.092 Sum_probs=69.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CC--------c-ccCCHHHHHhhCCEEEEecCCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GA--------T-VGGSPAEVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~--------~-~~~~~~~~~~~~dvvii~vp~~~~~ 70 (291)
+++.|+|+|.+|.+++..|++.| +|++++|+.++++.+.+. +. . ...+..+...++|++|.++|....-
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~~~~ 207 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYP 207 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTT
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCCCCC
Confidence 36899999999999999999999 999999998887776532 10 0 0112234456799999999754321
Q ss_pred --HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 71 --LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 71 --~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+...+ . -...++++.+++|++.. |... .+.+...+.|..++
T Consensus 208 ~~~~~~~--~-~~~~l~~~~~v~Dv~y~-p~~t-~ll~~a~~~G~~~~ 250 (287)
T 1nvt_A 208 NIDVEPI--V-KAEKLREDMVVMDLIYN-PLET-VLLKEAKKVNAKTI 250 (287)
T ss_dssp CCSSCCS--S-CSTTCCSSSEEEECCCS-SSSC-HHHHHHHTTTCEEE
T ss_pred CCCCCCC--C-CHHHcCCCCEEEEeeeC-CccC-HHHHHHHHCCCEEe
Confidence 00000 0 12346678899999864 3222 23334445565443
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.2e-06 Score=67.88 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=47.2
Q ss_pred CeEEEEecChhhHHHHHH--HHhCCCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMN--LLRNGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~--l~~~g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
++|+|||+|.+|..+++. +...|+++. ++|.++++....... ++...++.++++++.|++++|+|... ..++.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~~-~~ei~ 162 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVA-AQSIT 162 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHHH-HHHHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCchh-HHHHH
Confidence 479999999999999994 445678765 669998876542221 22234567777765699999997644 33444
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.90 E-value=8.9e-06 Score=69.54 Aligned_cols=112 Identities=10% Similarity=0.049 Sum_probs=66.6
Q ss_pred eEEEEecChhhHHHHHHHHhC-------CCcEE-EEcCCcchh------HHH----HHCC-Ccc-cCCHHHHHh--hCCE
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-------GFKVT-VWNRTLSKC------DEL----VAHG-ATV-GGSPAEVIK--KCTI 59 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-------g~~V~-~~~r~~~~~------~~l----~~~g-~~~-~~~~~~~~~--~~dv 59 (291)
||+|||+|.||..+++.|.+. +.+|. ++|++++.. +.+ .+.+ +.. ..+..+++. +.|+
T Consensus 6 rVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~iDv 85 (325)
T 3ing_A 6 RIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAADL 85 (325)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCCSE
T ss_pred EEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCCCE
Confidence 799999999999999999873 33444 557776422 111 2223 211 115566664 4799
Q ss_pred EEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEE
Q 022834 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFL 116 (291)
Q Consensus 60 vii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~ 116 (291)
|+.|+|...+.+... +-....+..|+.||...... ....+++.+...+.++.+.
T Consensus 86 VVe~T~~~~~~~pa~---~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~ 140 (325)
T 3ing_A 86 LVDCTPASRDGVREY---SLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIR 140 (325)
T ss_dssp EEECCCCCSSSHHHH---HHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred EEECCCCccccchHH---HHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEE
Confidence 999998643322222 22234566888888654421 1344556665666677665
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=2e-05 Score=67.77 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=57.6
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHH-------------------CCCcccCCHHHHHhhCCE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI 59 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~~dv 59 (291)
+||||+|+|.||..+++.|.++ ++++. +.+++++....+.. .++.+..+.+++..++|+
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv 81 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI 81 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence 4899999999999999999874 45654 45776554433322 233333356677778999
Q ss_pred EEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 60 vii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
||.|+|...+.+ .. + .+++.|..||+.+..
T Consensus 82 V~~atp~~~~~~-~a---~---~~l~aG~~VId~sp~ 111 (337)
T 1cf2_P 82 VIDCTPEGIGAK-NL---K---MYKEKGIKAIFQGGE 111 (337)
T ss_dssp EEECCSTTHHHH-HH---H---HHHHHTCCEEECTTS
T ss_pred EEECCCchhhHH-HH---H---HHHHcCCEEEEecCC
Confidence 999998765433 22 1 223345556766655
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.5e-05 Score=65.53 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=71.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCC---cchhHHHHHC-----CCc--c--cCC---HHHHHhhCCEEEEecC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT---LSKCDELVAH-----GAT--V--GGS---PAEVIKKCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~---~~~~~~l~~~-----g~~--~--~~~---~~~~~~~~dvvii~vp 65 (291)
++.|+|+|.+|.+++..|++.|. +|++++|+ .++++.+.+. +.. . .++ ..+.+.++|+||-|+|
T Consensus 156 ~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp 235 (315)
T 3tnl_A 156 KMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATG 235 (315)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSS
T ss_pred EEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECcc
Confidence 68899999999999999999998 89999999 7777776542 221 1 122 3345678999999997
Q ss_pred CHHHHHHHHhccCcc--ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 66 DPAAALSVVFDKGGV--LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l--~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
-...-..-. ..+ ...++++.+|+|+.-....+ .+.+...++|+..++
T Consensus 236 ~Gm~~~~~~---~p~~~~~~l~~~~~V~DlvY~P~~T--~ll~~A~~~G~~~~~ 284 (315)
T 3tnl_A 236 VGMKPFEGE---TLLPSADMLRPELIVSDVVYKPTKT--RLLEIAEEQGCQTLN 284 (315)
T ss_dssp TTSTTSTTC---CSCCCGGGCCTTCEEEESCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred CCCCCCCCC---CCCCcHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeEeC
Confidence 542110000 011 23466788899986553222 233334556765554
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.89 E-value=3.1e-05 Score=65.76 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=47.8
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCC--cEEEEcC--CcchhHHH----HHC-----CCcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGF--KVTVWNR--TLSKCDEL----VAH-----GATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~--~V~~~~r--~~~~~~~l----~~~-----g~~~~~~~~~~~~~~dvvii~vp 65 (291)
|||+|+| +|.+|..++..|+..|+ ++.++|+ ++++++.. .+. ...+..+..++++++|+||++.+
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag 79 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAG 79 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCC
Confidence 8999999 99999999999998876 6889999 77655331 111 12222223567889999999974
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=4e-05 Score=64.07 Aligned_cols=73 Identities=25% Similarity=0.201 Sum_probs=59.2
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||.|. +|..++..|...|.+|++++++ +.++.+.++++|+||.+++.+.- + .
T Consensus 167 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I---~-- 223 (301)
T 1a4i_A 167 HAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPEM----V---K-- 223 (301)
T ss_dssp EEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----B---C--
T ss_pred EEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCccc----C---C--
Confidence 789999996 7999999999999999999754 24778889999999999987542 2 1
Q ss_pred ccccCCCcEEEEcCCCC
Q 022834 81 LEQICPGKGYIDMSTVD 97 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~ 97 (291)
..++++|.+|||++...
T Consensus 224 ~~~vk~GavVIDVgi~~ 240 (301)
T 1a4i_A 224 GEWIKPGAIVIDCGINY 240 (301)
T ss_dssp GGGSCTTCEEEECCCBC
T ss_pred HHHcCCCcEEEEccCCC
Confidence 12357899999998763
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.84 E-value=4.2e-05 Score=63.51 Aligned_cols=72 Identities=22% Similarity=0.209 Sum_probs=57.9
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||.|. +|..++..|...|.+|++.+++ +.++.+.++++|+||.+++.+.. + .
T Consensus 163 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I---~-- 219 (285)
T 3l07_A 163 YAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNF----I---T-- 219 (285)
T ss_dssp EEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----B---C--
T ss_pred EEEEECCCchhHHHHHHHHHHCCCeEEEEeCC--------------chhHHHhcccCCEEEECCCCCCC----C---C--
Confidence 689999988 7999999999999999999864 24677889999999999976432 2 1
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||++..
T Consensus 220 ~~~vk~GavVIDvgi~ 235 (285)
T 3l07_A 220 ADMVKEGAVVIDVGIN 235 (285)
T ss_dssp GGGSCTTCEEEECCCE
T ss_pred HHHcCCCcEEEEeccc
Confidence 1346789999998755
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.3e-05 Score=63.46 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=58.2
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||.|. +|..++..|...|.+|++.+++. .++.+.++++|+||.+++.+.- + .
T Consensus 162 ~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~----I---~-- 218 (285)
T 3p2o_A 162 DAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNL----L---R-- 218 (285)
T ss_dssp EEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSCTTC----B---C--
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCCCCc----C---C--
Confidence 689999988 69999999999999999998752 4677889999999999986432 2 1
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||++..
T Consensus 219 ~~~vk~GavVIDVgi~ 234 (285)
T 3p2o_A 219 SDMVKEGVIVVDVGIN 234 (285)
T ss_dssp GGGSCTTEEEEECCCE
T ss_pred HHHcCCCeEEEEeccC
Confidence 2346789999998755
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.83 E-value=7.1e-05 Score=59.94 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=50.8
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-----cCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~~dvvii~vp~ 66 (291)
|||.|.|+ |.+|..++..|.++|++|++.+|++++.+.+. .++.+ .+...+.+.++|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 89999995 99999999999999999999999988877654 33322 11112567789999998744
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=5.7e-05 Score=64.14 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=72.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCC---cchhHHHHHC-----CCc--c--cCCH---HHHHhhCCEEEEecC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT---LSKCDELVAH-----GAT--V--GGSP---AEVIKKCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~---~~~~~~l~~~-----g~~--~--~~~~---~~~~~~~dvvii~vp 65 (291)
++.|+|+|.+|.+++..|++.|. +|++++|+ .++++.+.+. +.. . ..+. .+.+.++|+||-|+|
T Consensus 150 ~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp 229 (312)
T 3t4e_A 150 TMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTK 229 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECSS
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEECCc
Confidence 68899999999999999999997 79999999 7777776542 221 1 2232 455778999999997
Q ss_pred CHHHHHHHHhccCcc---ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 66 DPAAALSVVFDKGGV---LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l---~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
-...-..- ..+ ...++++.+++|+.-....+ .+.+...++|+..++.
T Consensus 230 ~Gm~~~~~----~~~~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~G 279 (312)
T 3t4e_A 230 VGMKPLEN----ESLIGDVSLLRPELLVTECVYNPHMT--KLLQQAQQAGCKTIDG 279 (312)
T ss_dssp TTSTTSTT----CCSCCCGGGSCTTCEEEECCCSSSSC--HHHHHHHHTTCEEECH
T ss_pred CCCCCCCC----CcccCCHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeEECc
Confidence 64310000 111 13466788899976543222 2333345567665543
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=97.82 E-value=3.7e-05 Score=63.84 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=58.2
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||.|. +|..++..|...|.+|++++++. .++.+.++++|+||.+++.+. ++ .
T Consensus 161 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~----lI---~-- 217 (288)
T 1b0a_A 161 NAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPG----FI---P-- 217 (288)
T ss_dssp EEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTT----CB---C--
T ss_pred EEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCcC----cC---C--
Confidence 789999997 69999999999999999998653 467788899999999998654 12 1
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 218 ~~~vk~GavVIDVgi~ 233 (288)
T 1b0a_A 218 GDWIKEGAIVIDVGIN 233 (288)
T ss_dssp TTTSCTTCEEEECCCE
T ss_pred HHHcCCCcEEEEccCC
Confidence 1235789999998765
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=4.7e-05 Score=65.37 Aligned_cols=110 Identities=17% Similarity=0.191 Sum_probs=68.0
Q ss_pred CeEEEEecChhhHHHHHHHHhC------C--CcEE-EEcCCcchhHH------HH----HCCCc-ccC---CHHHHHh-h
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN------G--FKVT-VWNRTLSKCDE------LV----AHGAT-VGG---SPAEVIK-K 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~------g--~~V~-~~~r~~~~~~~------l~----~~g~~-~~~---~~~~~~~-~ 56 (291)
+||+|||+|.||..++..|.+. | .+|. ++|+++++.+. +. ..++. +++ +.++++. +
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~ 86 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD 86 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence 3799999999999999999764 2 4544 66888765443 11 12332 344 7888772 4
Q ss_pred CCEEEEecCCH---HHHHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEE
Q 022834 57 CTITIGMLADP---AAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 57 ~dvvii~vp~~---~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~ 116 (291)
.|+|++|+|.. ....+.+ ...+..|+.|+..... .....+++.+...+.++.|.
T Consensus 87 iDvVv~~t~~~~~~~~~~~~~------~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~ 144 (331)
T 3c8m_A 87 FDIVVDATPASADGKKELAFY------KETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIR 144 (331)
T ss_dssp CSEEEECSCCCSSSHHHHHHH------HHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEECCCCCCccchHHHHH------HHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEE
Confidence 79999999884 2222222 2345678887743221 12334555555556676654
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=97.82 E-value=3.7e-05 Score=63.64 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=57.7
Q ss_pred eEEEEecChh-hHHHHHHHHhC--CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 2 EVGFLGLGIM-GKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 2 kI~iIG~G~m-G~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
++.|||.|.+ |..++..|... |.+|++.+++. .++.+.++++|+||.+++.+.- + .
T Consensus 160 ~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~----I---~ 218 (281)
T 2c2x_A 160 HVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAHL----L---T 218 (281)
T ss_dssp EEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTTC----B---C
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCcc----c---C
Confidence 7899999985 99999999998 88999998653 4777888999999999977542 2 1
Q ss_pred ccccccCCCcEEEEcCCC
Q 022834 79 GVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~ 96 (291)
..+++++.+|||++..
T Consensus 219 --~~~vk~GavVIDVgi~ 234 (281)
T 2c2x_A 219 --ADMVRPGAAVIDVGVS 234 (281)
T ss_dssp --GGGSCTTCEEEECCEE
T ss_pred --HHHcCCCcEEEEccCC
Confidence 1235788999998765
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=9.6e-05 Score=63.66 Aligned_cols=69 Identities=17% Similarity=0.344 Sum_probs=47.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEE-EEcCCcchhHHHH-HCCCcc-----------------cCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVT-VWNRTLSKCDELV-AHGATV-----------------GGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~-~~~r~~~~~~~l~-~~g~~~-----------------~~~~~~~~~~~dvv 60 (291)
+||||+|+|+||..+++.|.++. .++. +.+++++....+. ..|... ..+.+++..++|+|
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV 81 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV 81 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence 38999999999999999998753 4654 5577766544333 234333 23444555689999
Q ss_pred EEecCCHHH
Q 022834 61 IGMLADPAA 69 (291)
Q Consensus 61 ii~vp~~~~ 69 (291)
|.|+|....
T Consensus 82 ~~aTp~~~s 90 (340)
T 1b7g_O 82 VDTTPNGVG 90 (340)
T ss_dssp EECCSTTHH
T ss_pred EECCCCchh
Confidence 999987643
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=9.6e-05 Score=62.80 Aligned_cols=91 Identities=14% Similarity=0.217 Sum_probs=60.4
Q ss_pred CeEEEEe-cChhhHHHHHHHHhC-C--CcEEEEcCCcchhH----HHHHCCC--ccc----CCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRN-G--FKVTVWNRTLSKCD----ELVAHGA--TVG----GSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~-g--~~V~~~~r~~~~~~----~l~~~g~--~~~----~~~~~~~~~~dvvii~vp~ 66 (291)
|||+||| +|.+|..++..|... + .++.++|+++ +.+ .+.+... .+. ++..+.++++|+||++.+.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~ 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence 8999999 899999999999875 5 4799999976 322 2222211 222 2456778899999999743
Q ss_pred HH---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 67 PA---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 67 ~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+. .++++. +.+.+. .++.+++..||-
T Consensus 80 ~rkpG~~R~dll~~N~~I~~~i~---~~i~~~-~p~a~vlvvtNP 120 (312)
T 3hhp_A 80 ARKPGMDRSDLFNVNAGIVKNLV---QQVAKT-CPKACIGIITNP 120 (312)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHH---HHHHHH-CTTSEEEECSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH---HHHHHH-CCCcEEEEecCc
Confidence 31 133333 344444 366777777654
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.78 E-value=5e-05 Score=64.14 Aligned_cols=106 Identities=21% Similarity=0.199 Sum_probs=71.2
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchh-HHHHHCCCcccCCHHHHHh--h-CCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGATVGGSPAEVIK--K-CTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~--~-~dvvii~vp~~~~~~~v~~~ 76 (291)
++.|+|+ |.||..+.+.+.+.|++ .++..+|.+. +. -.|.+++.+.+++.+ . +|++++++|.. .+.+++
T Consensus 15 ~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~~DvaIi~vp~~-~~~~~v-- 88 (297)
T 2yv2_A 15 RVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSE--VHGVPVYDSVKEALAEHPEINTSIVFVPAP-FAPDAV-- 88 (297)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHCTTCCEEEECCCGG-GHHHHH--
T ss_pred EEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCCEEEEecCHH-HHHHHH--
Confidence 6778898 99999999999988998 4444444431 11 148888999999886 5 99999999764 455555
Q ss_pred cCccccccCCCcEEEEcCCCCHH-HHHHHHHHHHhcCCcEE
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHE-TSIKISRAITSKGGHFL 116 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~-~~~~~~~~~~~~~~~~~ 116 (291)
+++.+. .-+.+|..+++.+. ..+++.+...+.++.++
T Consensus 89 -~ea~~~--Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi 126 (297)
T 2yv2_A 89 -YEAVDA--GIRLVVVITEGIPVHDTMRFVNYARQKGATII 126 (297)
T ss_dssp -HHHHHT--TCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred -HHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 334332 11334545666543 45667777777777555
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.77 E-value=6.2e-05 Score=61.19 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=48.9
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCC-ccc-----CCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TVG-----GSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~-~~~-----~~~~~~~~~~dvvii~v 64 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|++++.+.+.+.++ ... .+..+.++++|+||.+.
T Consensus 22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~a 92 (236)
T 3e8x_A 22 MRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAA 92 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECC
Confidence 68999987 999999999999999999999999998887766554 221 23344445566666555
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.76 E-value=6.5e-05 Score=62.35 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=58.0
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||.|. +|..++..|...|.+|++.++.. .++++.++++|+||.+++.+.- + .
T Consensus 163 ~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~p~~----I---~-- 219 (286)
T 4a5o_A 163 DAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGKPGL----V---K-- 219 (286)
T ss_dssp EEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCCTTC----B---C--
T ss_pred EEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCCCCC----C---C--
Confidence 789999987 89999999999999999997642 3677888999999999986432 2 1
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||++..
T Consensus 220 ~~~vk~GavVIDvgi~ 235 (286)
T 4a5o_A 220 GEWIKEGAIVIDVGIN 235 (286)
T ss_dssp GGGSCTTCEEEECCSC
T ss_pred HHHcCCCeEEEEeccc
Confidence 2346799999998765
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.74 E-value=5.2e-05 Score=65.10 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=49.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCC----cchhHH----HHHCC------CcccCCHHHHHhhCC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRT----LSKCDE----LVAHG------ATVGGSPAEVIKKCT 58 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~----~~~~~~----l~~~g------~~~~~~~~~~~~~~d 58 (291)
|||+|+|+ |.+|..++..|...|+ +|.++|++ +++++. +.+.. +....+..++++++|
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~aD 85 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDAD 85 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCCC
Confidence 69999998 9999999999998885 79999998 544432 33211 122357788889999
Q ss_pred EEEEecC
Q 022834 59 ITIGMLA 65 (291)
Q Consensus 59 vvii~vp 65 (291)
+||++..
T Consensus 86 ~Vi~~ag 92 (329)
T 1b8p_A 86 VALLVGA 92 (329)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 9999863
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.74 E-value=8.5e-06 Score=69.85 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=57.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCC---------CcE-EEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG---------FKV-TVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g---------~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~ 70 (291)
|||+|||+|.||..++..|.+.. .+| -+++++.++.+.+. ...+++|.++++ +.|+|++|+|...+.
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~--~~~~~~d~~~ll-~iDvVve~t~~~~~a 80 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIP--QELLRAEPFDLL-EADLVVEAMGGVEAP 80 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSC--GGGEESSCCCCT-TCSEEEECCCCSHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccC--cccccCCHHHHh-CCCEEEECCCCcHHH
Confidence 47999999999999999998753 454 46688866543220 123456777777 899999999876544
Q ss_pred HHHHhccCccccccCCCcEEEE
Q 022834 71 LSVVFDKGGVLEQICPGKGYID 92 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~ 92 (291)
.+.. ...+..|+.|+.
T Consensus 81 ~~~~------~~AL~aGKhVVt 96 (332)
T 2ejw_A 81 LRLV------LPALEAGIPLIT 96 (332)
T ss_dssp HHHH------HHHHHTTCCEEE
T ss_pred HHHH------HHHHHcCCeEEE
Confidence 4443 234557777774
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=8.7e-05 Score=64.27 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=65.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCC----cchh--------HHHHHC-C-CcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT----LSKC--------DELVAH-G-ATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~----~~~~--------~~l~~~-g-~~~~~~~~~~~~~~dvvii~vp 65 (291)
.||.|+|+|.+|..+++.|...|. +|+++||+ .++. +.+... + .....++.|+++++|++|-+..
T Consensus 193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sa 272 (388)
T 1vl6_A 193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSR 272 (388)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCC
Confidence 389999999999999999999997 79999998 5442 233332 1 1224578999999999888774
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCCCH
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
...-.++++ +. ..++.+|+++|+-.|
T Consensus 273 p~l~t~emV---k~----Ma~~pIIfalSNPt~ 298 (388)
T 1vl6_A 273 GNILKPEWI---KK----MSRKPVIFALANPVP 298 (388)
T ss_dssp SSCSCHHHH---TT----SCSSCEEEECCSSSC
T ss_pred CCccCHHHH---Hh----cCCCCEEEEcCCCCC
Confidence 222234444 33 335679999998755
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.72 E-value=7.7e-05 Score=61.42 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=30.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
.+|.|||+|.+|+.++..|+..|. +++++|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 479999999999999999999996 899999986
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.72 E-value=5.3e-05 Score=60.94 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=51.0
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-----cCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~~dvvii~vp~ 66 (291)
|||.|.|+ |.+|..++..|.+.|++|++.+|++++.+.+...++.. .+...+.++++|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 89999987 99999999999999999999999988877665444332 11111566788988887743
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=2.8e-05 Score=67.43 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=51.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCC----CcEE-EEcCCcchhHHHHHC--CCcccCCHHHHHhhC----------------
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG----FKVT-VWNRTLSKCDELVAH--GATVGGSPAEVIKKC---------------- 57 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g----~~V~-~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~~---------------- 57 (291)
|||+|||+|.||..++..|.+.. .+|. ++|++... +.+. |+..+++.++++++.
T Consensus 5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~---~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~ 81 (358)
T 1ebf_A 5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSL---ISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKT 81 (358)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEE---ECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTT
T ss_pred EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhh---hccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhh
Confidence 48999999999999999998863 3443 45654321 2222 444445555555432
Q ss_pred ----CEEEEecCCHHHHHHHHhccCccccccCCCcEEEE
Q 022834 58 ----TITIGMLADPAAALSVVFDKGGVLEQICPGKGYID 92 (291)
Q Consensus 58 ----dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~ 92 (291)
|+|+.|+|.+.+.+.. ...+..|+.|+.
T Consensus 82 ~~~~DvVV~~t~~~~~a~~~-------~~AL~aGkhVVt 113 (358)
T 1ebf_A 82 SPKPVILVDNTSSAYIAGFY-------TKFVENGISIAT 113 (358)
T ss_dssp CSSCEEEEECSCCHHHHTTH-------HHHHHTTCEEEC
T ss_pred ccCCcEEEEcCCChHHHHHH-------HHHHHCCCeEEe
Confidence 6888888776543322 245567777774
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.67 E-value=7.1e-05 Score=64.19 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=72.2
Q ss_pred CeEEEEecChhhHH-HHHHHHhCCCcEEEEcCCcc--hhHHHHHCCCccc--CCHHHHH-hhCCEEEEe--cCC-HHHHH
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS--KCDELVAHGATVG--GSPAEVI-KKCTITIGM--LAD-PAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~~g~~V~~~~r~~~--~~~~l~~~g~~~~--~~~~~~~-~~~dvvii~--vp~-~~~~~ 71 (291)
|||.|||.|.+|.+ +|..|.+.|++|+++|+++. ..+.+.+.|+.+. .+.+++. .++|+||+. +|. ...+.
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~~ 84 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVVE 84 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHHH
T ss_pred cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHHH
Confidence 58999999999995 99999999999999998643 4567778887764 3455554 478999885 332 22333
Q ss_pred HHHhc-c-----Ccc-ccccCC-CcE-EEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 72 SVVFD-K-----GGV-LEQICP-GKG-YIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 72 ~v~~~-~-----~~l-~~~l~~-~~~-vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
..... . .++ ...+.+ .++ -|.-|++...+..-+...+...|.
T Consensus 85 ~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~ 135 (326)
T 3eag_A 85 AILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL 135 (326)
T ss_dssp HHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 32210 0 011 111222 233 455556667777777778877764
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.67 E-value=6.2e-05 Score=64.81 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=54.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc----CCHHH---H-HhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAE---V-IKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~---~-~~~~dvvii~vp~~~~~~~ 72 (291)
++|.|+|+|.+|..++..|.+.|+ |++.|+++++.+ +.+.+..+. .+.+. + ++++|.++++++++...-.
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~ 193 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIH 193 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHHHH
Confidence 379999999999999999999999 999999999998 877765432 22222 2 3578999999977654333
Q ss_pred H
Q 022834 73 V 73 (291)
Q Consensus 73 v 73 (291)
+
T Consensus 194 ~ 194 (336)
T 1lnq_A 194 C 194 (336)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.65 E-value=9.8e-05 Score=53.58 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=73.4
Q ss_pred eEEEEec----ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~----G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
+|+|||+ +..|..+.++|.+.||+|+.+++..+.. .|.+.+.++.++-. .|++++++| +..+.+++
T Consensus 6 siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p-~~~v~~~v--- 75 (122)
T 3ff4_A 6 KTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYIN-PQNQLSEY--- 75 (122)
T ss_dssp CEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSC-HHHHGGGH---
T ss_pred EEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeC-HHHHHHHH---
Confidence 6999998 5789999999999999999988764433 37788888888877 999999995 47777777
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
+++...- -..+++ +.+.. -+++.+...+.|+.++.
T Consensus 76 ~e~~~~g-~k~v~~--~~G~~--~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 76 NYILSLK-PKRVIF--NPGTE--NEELEEILSENGIEPVI 110 (122)
T ss_dssp HHHHHHC-CSEEEE--CTTCC--CHHHHHHHHHTTCEEEE
T ss_pred HHHHhcC-CCEEEE--CCCCC--hHHHHHHHHHcCCeEEC
Confidence 5555432 224443 44432 24566667778888773
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.63 E-value=7e-05 Score=62.66 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=51.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc----CCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~~~~~dvvii~vp 65 (291)
|||.|.|+|.+|..++..|.++||+|++.+|++++.+.+...++... .+.+ +.++|+||-+.+
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~ 72 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTA 72 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCC
Confidence 68999999999999999999999999999999988887776654321 1222 678999998874
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00016 Score=61.27 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=73.1
Q ss_pred eEEEE-ec-ChhhHHHHHHHHhCCCcEEEEcCCcchhH-HHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD-ELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iI-G~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~-~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~~ 76 (291)
+++|| |+ |.+|..++..|.+.|++ .++..+|.+.. . -.|.+++.+.+|+.+ ..|++++++|. ....+++
T Consensus 15 siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~~~~-- 88 (305)
T 2fp4_A 15 TKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGGKT--HLGLPVFNTVKEAKEQTGATASVIYVPP-PFAAAAI-- 88 (305)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHH--
T ss_pred cEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCcce--ECCeeeechHHHhhhcCCCCEEEEecCH-HHHHHHH--
Confidence 57888 99 99999999999999999 44444444311 1 248888899999988 89999999966 4556665
Q ss_pred cCccccccCCCcEEEEcCCCCH-HHHHHHHHHHHhc-CCcEE
Q 022834 77 KGGVLEQICPGKGYIDMSTVDH-ETSIKISRAITSK-GGHFL 116 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~-~~~~~~~~~~~~~-~~~~~ 116 (291)
+++...- - +.++..+.+.+ ...+++.+...+. ++.++
T Consensus 89 -~e~i~~G-i-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~li 127 (305)
T 2fp4_A 89 -NEAIDAE-V-PLVVCITEGIPQQDMVRVKHRLLRQGKTRLI 127 (305)
T ss_dssp -HHHHHTT-C-SEEEECCCCCCHHHHHHHHHHHTTCSSCEEE
T ss_pred -HHHHHCC-C-CEEEEECCCCChHHHHHHHHHHHhcCCcEEE
Confidence 3443321 1 45555666654 3345677777777 77665
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00037 Score=56.11 Aligned_cols=69 Identities=23% Similarity=0.220 Sum_probs=50.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc-hhHHHHHCC-CcccC-C-HHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATVGG-S-PAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g-~~~~~-~-~~~~~~~~dvvii~vp~~~~ 69 (291)
++|.|||.|.+|..-+..|.++|.+|++++++.. .++.+.+.+ +.+.. . ..+.+.++|+||.|+.++..
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~~ 104 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQAV 104 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHHH
Confidence 4799999999999999999999999999987543 345565553 33321 1 12345689999999866543
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00012 Score=63.09 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=67.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHh-hCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.+++|+|+|++|...+..+...|.+|+++|+++++.+...+.+.+.. +.++++. +||+++-|- ....+.. +
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A-~~~~I~~------~ 247 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCA-MGGVITT------E 247 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECS-CSCCBCH------H
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhH-HHhhcCH------H
Confidence 37999999999999999999999999999998765222333465554 5567666 899987553 2111111 1
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
-.+.+ +.++|+..++......+ -.+.+.+.++.+
T Consensus 248 ~~~~l-k~~iVie~AN~p~t~~e-A~~~L~~~gIlv 281 (355)
T 1c1d_A 248 VARTL-DCSVVAGAANNVIADEA-ASDILHARGILY 281 (355)
T ss_dssp HHHHC-CCSEECCSCTTCBCSHH-HHHHHHHTTCEE
T ss_pred HHhhC-CCCEEEECCCCCCCCHH-HHHHHHhCCEEE
Confidence 11233 35788887776432112 245666666544
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00016 Score=62.70 Aligned_cols=86 Identities=16% Similarity=0.185 Sum_probs=55.2
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHH-----CC-----CcccCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVA-----HG-----ATVGGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~-----~g-----~~~~~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+|+| +|.+|..+.+.|.++. +++..+....+.-+.+.. .+ +.+. + ++..+++|+||+|+|...
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~~vDvVf~atp~~~ 94 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DADFSTVDAVFCCLPHGT 94 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCCGGGCSEEEECCCTTT
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhHhcCCCEEEEcCCchh
Confidence 3799999 8999999999999875 366665433222122211 11 1121 1 334468999999998866
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
..+.+- .+ ..|..+||.|..
T Consensus 95 s~~~a~-------~~-~aG~~VId~sa~ 114 (359)
T 1xyg_A 95 TQEIIK-------EL-PTALKIVDLSAD 114 (359)
T ss_dssp HHHHHH-------TS-CTTCEEEECSST
T ss_pred HHHHHH-------HH-hCCCEEEECCcc
Confidence 544332 23 467889999875
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=4.9e-05 Score=68.46 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=45.8
Q ss_pred CeEEEEecChhhHH--HHHHHHhC------CCcEEEEcCCcchhHHHHH--------CC----CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKA--ISMNLLRN------GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~--la~~l~~~------g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+|++|.. +...++.. +.+|.++|.++++++.... .| +..+++.++++++||+|
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V 80 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI 80 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence 89999999998755 33334431 2469999999987764211 12 23367888999999999
Q ss_pred EEec
Q 022834 61 IGML 64 (291)
Q Consensus 61 ii~v 64 (291)
|++.
T Consensus 81 i~~~ 84 (477)
T 3u95_A 81 INTA 84 (477)
T ss_dssp EECC
T ss_pred EECc
Confidence 9986
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00015 Score=62.62 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=54.6
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHH-------H-CCCcccCCHHHHHhhCCEEEEecCCHHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV-------A-HGATVGGSPAEVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~-------~-~g~~~~~~~~~~~~~~dvvii~vp~~~~~ 70 (291)
|||+|+| .|.+|..+.+.|.++.. +++.+.+..+.-+.+. . ....+. +.++ +.++|+||+|+|...+.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~-~~~~-~~~vDvV~~a~g~~~s~ 82 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFV-PPEK-LEPADILVLALPHGVFA 82 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCB-CGGG-CCCCSEEEECCCTTHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccccc-chhH-hcCCCEEEEcCCcHHHH
Confidence 4899999 69999999999987654 6665544322211111 1 112222 2334 46899999999886543
Q ss_pred HHHHhccCccccccCCCcEEEEcCCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+.. + .++..|..+||+|..
T Consensus 83 -~~a---~---~~~~aG~~VId~Sa~ 101 (345)
T 2ozp_A 83 -REF---D---RYSALAPVLVDLSAD 101 (345)
T ss_dssp -HTH---H---HHHTTCSEEEECSST
T ss_pred -HHH---H---HHHHCCCEEEEcCcc
Confidence 332 1 234567889999875
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.49 E-value=7.1e-05 Score=64.21 Aligned_cols=89 Identities=11% Similarity=0.089 Sum_probs=56.3
Q ss_pred CeEEEEe-cChhhHHHHHHHHhC-CCcEEEE-cCCc--chhHHHH-------HC-CCcccC--CHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRN-GFKVTVW-NRTL--SKCDELV-------AH-GATVGG--SPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~-g~~V~~~-~r~~--~~~~~l~-------~~-g~~~~~--~~~~~~~~~dvvii~vp 65 (291)
|||+|+| .|.+|..+.+.|.++ .+++..+ .+++ ..-+.+. .. ...+.+ +.+++.+++|+||+|+|
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p 84 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA 84 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence 4899999 599999999999984 4676655 3321 1111121 11 222222 34454478999999997
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
... ..+.. +. ++..|..+||+|+.
T Consensus 85 ~~~-s~~~~---~~---~~~~g~~vIDlSa~ 108 (337)
T 3dr3_A 85 HEV-SHDLA---PQ---FLEAGCVVFDLSGA 108 (337)
T ss_dssp HHH-HHHHH---HH---HHHTTCEEEECSST
T ss_pred hHH-HHHHH---HH---HHHCCCEEEEcCCc
Confidence 744 34343 22 24578899999986
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00013 Score=63.33 Aligned_cols=88 Identities=19% Similarity=0.190 Sum_probs=54.2
Q ss_pred eEEEEe-cChhhHHHHHHHHhCC-CcEEEEcCCcc----hhHHHHH-----------CCCccc-CCHHHHHh-hCCEEEE
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNG-FKVTVWNRTLS----KCDELVA-----------HGATVG-GSPAEVIK-KCTITIG 62 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g-~~V~~~~r~~~----~~~~l~~-----------~g~~~~-~~~~~~~~-~~dvvii 62 (291)
||+|+| +|.+|..+.+.|.++. ++|+.+.+++. ....... ....+. .+++++.+ ++|+||+
T Consensus 10 kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~ 89 (354)
T 1ys4_A 10 KVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVFS 89 (354)
T ss_dssp EEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEEE
T ss_pred eEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEEE
Confidence 899999 8999999999998764 57765543221 1211100 011111 14445546 8999999
Q ss_pred ecCCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 63 ~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
|+|.... .+.. +.+ +..|..|||.|..
T Consensus 90 atp~~~~-~~~a---~~~---~~aG~~VId~s~~ 116 (354)
T 1ys4_A 90 ALPSDLA-KKFE---PEF---AKEGKLIFSNASA 116 (354)
T ss_dssp CCCHHHH-HHHH---HHH---HHTTCEEEECCST
T ss_pred CCCchHH-HHHH---HHH---HHCCCEEEECCch
Confidence 9977543 3333 222 3467779998865
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0009 Score=59.95 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=71.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc----hhHHHHHCCCccc--CCHHHHHhh-CCEEEEec--CC-HHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS----KCDELVAHGATVG--GSPAEVIKK-CTITIGML--AD-PAAAL 71 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~----~~~~l~~~g~~~~--~~~~~~~~~-~dvvii~v--p~-~~~~~ 71 (291)
||.|||.|..|.+.|+.|.+.|++|+++|+++. ..+.+.+.|+.+. .+.++...+ +|+||++. |. ...+.
T Consensus 11 ~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~~p~~~ 90 (451)
T 3lk7_A 11 KVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPMVK 90 (451)
T ss_dssp EEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTTSHHHH
T ss_pred EEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCCChhHH
Confidence 799999999999999999999999999998642 3456777787654 233445555 89998863 22 12222
Q ss_pred HHHhc-c---C--ccccccCCCcEE-EEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 72 SVVFD-K---G--GVLEQICPGKGY-IDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 72 ~v~~~-~---~--~l~~~l~~~~~v-v~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
..... . . ++...+.+..+| |.-|++...+..-+...+...|..
T Consensus 91 ~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~ 140 (451)
T 3lk7_A 91 KALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQR 140 (451)
T ss_dssp HHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 22210 0 0 111122234444 444556666777777778776653
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=1.9e-05 Score=63.17 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=46.6
Q ss_pred CeEEEEecChhhHHHHHHHHh-CCCcEE-EEcCCcchhHHHHHCCCc--ccCCHHHHHh-hCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKCDELVAHGAT--VGGSPAEVIK-KCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~-~g~~V~-~~~r~~~~~~~l~~~g~~--~~~~~~~~~~-~~dvvii~vp~~~ 68 (291)
++|+|||+|.+|..+++.+.. .|+++. ++|.++++...... |.. ..++.+++++ +.|++++|+|...
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~-gv~V~~~~dl~ell~~~ID~ViIA~Ps~~ 152 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVR-GGVIEHVDLLPQRVPGRIEIALLTVPREA 152 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEET-TEEEEEGGGHHHHSTTTCCEEEECSCHHH
T ss_pred CEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhc-CCeeecHHhHHHHHHcCCCEEEEeCCchh
Confidence 379999999999999996322 267755 66988887643222 322 3456677665 5899999997654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00019 Score=57.59 Aligned_cols=40 Identities=20% Similarity=0.466 Sum_probs=35.2
Q ss_pred Ce-EEEEe-cChhhHHHHHHHH-hCCCcEEEEcCCcc-hhHHHH
Q 022834 1 ME-VGFLG-LGIMGKAISMNLL-RNGFKVTVWNRTLS-KCDELV 40 (291)
Q Consensus 1 mk-I~iIG-~G~mG~~la~~l~-~~g~~V~~~~r~~~-~~~~l~ 40 (291)
|| |.|.| .|.+|..++..|+ +.|++|++.+|+++ +.+.+.
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~ 48 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI 48 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc
Confidence 46 88998 5999999999999 89999999999988 776664
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00012 Score=63.27 Aligned_cols=88 Identities=17% Similarity=0.128 Sum_probs=55.1
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCC-----C-cEEEEc-C-Ccch-hHH----HHH-CCCcccC-CHHHHHhhCCEEEEec
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNG-----F-KVTVWN-R-TLSK-CDE----LVA-HGATVGG-SPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g-----~-~V~~~~-r-~~~~-~~~----l~~-~g~~~~~-~~~~~~~~~dvvii~v 64 (291)
|||+|+| .|.+|..+.+.|.+++ + +++.+. + +..+ ... +.. ....+.+ +. +...++|+||+|+
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~al 88 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLAL 88 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEECC
Confidence 4899999 8999999999999887 3 566553 2 2212 221 111 1222221 33 3345899999999
Q ss_pred CCHHHHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 65 ADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 65 p~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
|... ..++. +.+ ..|..+||+|+..
T Consensus 89 g~~~-s~~~~---~~~----~~G~~vIDlSa~~ 113 (352)
T 2nqt_A 89 PHGH-SAVLA---QQL----SPETLIIDCGADF 113 (352)
T ss_dssp TTSC-CHHHH---HHS----CTTSEEEECSSTT
T ss_pred CCcc-hHHHH---HHH----hCCCEEEEECCCc
Confidence 7743 33344 222 4678899998764
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=9.9e-05 Score=58.34 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=33.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD 37 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~ 37 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|++++.+
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~ 41 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP 41 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcc
Confidence 68999988 99999999999999999999999877643
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00081 Score=57.84 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=45.6
Q ss_pred eEEEEecChhhHHHHHHHHhC-CCcEEE-EcCCcchhHHH---------------------HHCCCcccCCHHHHHhhCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-GFKVTV-WNRTLSKCDEL---------------------VAHGATVGGSPAEVIKKCT 58 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g~~V~~-~~r~~~~~~~l---------------------~~~g~~~~~~~~~~~~~~d 58 (291)
||||+|+|.+|..+++.|.++ +++|.. .+++++....+ .+.++.+..+..++..++|
T Consensus 4 kVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~vD 83 (343)
T 2yyy_A 4 KVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDAD 83 (343)
T ss_dssp EEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGCS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCCC
Confidence 899999999999999999876 467554 45544433222 2223333334555556899
Q ss_pred EEEEecCCHH
Q 022834 59 ITIGMLADPA 68 (291)
Q Consensus 59 vvii~vp~~~ 68 (291)
+|+.|+|...
T Consensus 84 iV~eatg~~~ 93 (343)
T 2yyy_A 84 IVVDGAPKKI 93 (343)
T ss_dssp EEEECCCTTH
T ss_pred EEEECCCccc
Confidence 9999997754
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.33 E-value=5.8e-05 Score=61.45 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=45.6
Q ss_pred eEEEEe-cChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHCCCcc-------cCCHHHHHhhCCEEEEecC
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvvii~vp 65 (291)
+|.|.| .|.+|..++..|++.| ++|++++|++++.+.+...++.. ..+..++++.+|+||.+.+
T Consensus 25 ~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~ 97 (236)
T 3qvo_A 25 NVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLT 97 (236)
T ss_dssp EEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECC
T ss_pred EEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCC
Confidence 588888 6999999999999999 89999999987765433222211 1123345567788877764
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.32 E-value=7.3e-05 Score=60.02 Aligned_cols=37 Identities=19% Similarity=0.379 Sum_probs=33.9
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCD 37 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~ 37 (291)
|||.|.| .|.+|..++..|.+.|++|++.+|++++.+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 38 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVP 38 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchh
Confidence 8999998 699999999999999999999999987654
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00014 Score=60.94 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=50.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHCCCccc----C---CHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVG----G---SPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~~----~---~~~~~~~~~dvvii~vp 65 (291)
|||.|.|+ |.+|..++..|.+. |++|++.+|++++...+...++.+. . +..++++++|+||.+.+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 89999985 99999999999987 9999999999887765544443321 1 23455678899988864
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00014 Score=58.59 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=44.6
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-------cCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvvii~vp 65 (291)
|||.|.| .|.+|..++..|.+.|++|++.+|++++.+.+. .++.. ..+..++++++|+||.+..
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence 5899998 599999999999999999999999987654321 11111 1122344556777776653
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0015 Score=57.78 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=43.8
Q ss_pred CeEEEEecChh-hHHHHHHHHh--C---CCcEEEEcCCcchhHHHHH-------CCCcc--cCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIM-GKAISMNLLR--N---GFKVTVWNRTLSKCDELVA-------HGATV--GGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~m-G~~la~~l~~--~---g~~V~~~~r~~~~~~~l~~-------~g~~~--~~~~~~~~~~~dvvii~vp 65 (291)
|||+|||+|.+ +..+...|.. . +.+|.++|+++++++...+ ...++ +.+..+++++||+||++..
T Consensus 3 ~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Viitag 82 (417)
T 1up7_A 3 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 82 (417)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEEcCC
Confidence 79999999995 1222233454 3 4579999999987654211 11223 3566788899999999984
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0015 Score=56.22 Aligned_cols=86 Identities=21% Similarity=0.320 Sum_probs=55.6
Q ss_pred eEEEEec-ChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHH------CCCcccC-CHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVA------HGATVGG-SPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~------~g~~~~~-~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
||+|||+ |..|..|.+.|.++. .++.........-+.+.+ ....+.+ +.+++..++|++|+|+|... ..+
T Consensus 15 ~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~-s~~ 93 (351)
T 1vkn_A 15 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA-SYD 93 (351)
T ss_dssp EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH-HHH
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHH-HHH
Confidence 8999975 999999999999864 355554322111111211 2333322 45555578999999998754 444
Q ss_pred HHhccCccccccCCCcEEEEcCCC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.. +.+ .|..|||+|+.
T Consensus 94 ~~---~~~-----~g~~VIDlSsd 109 (351)
T 1vkn_A 94 LV---REL-----KGVKIIDLGAD 109 (351)
T ss_dssp HH---TTC-----CSCEEEESSST
T ss_pred HH---HHh-----CCCEEEECChh
Confidence 44 333 68899999986
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=4.7e-05 Score=60.67 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=46.3
Q ss_pred eEEEEecChhhHHHHHHH--HhCCCcEE-EEcCCcc-hhHH-HHHCCCccc--CCHHHHHh--hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNL--LRNGFKVT-VWNRTLS-KCDE-LVAHGATVG--GSPAEVIK--KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l--~~~g~~V~-~~~r~~~-~~~~-l~~~g~~~~--~~~~~~~~--~~dvvii~vp~~~ 68 (291)
+++|||+|++|.+++..+ .+.|+++. ++|.+++ +... .. .|+.+. ++.++.++ +.|++++|+|...
T Consensus 86 ~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i-~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~~ 160 (212)
T 3keo_A 86 NVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE-DGIPVYGISTINDHLIDSDIETAILTVPSTE 160 (212)
T ss_dssp EEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT-TCCBEEEGGGHHHHC-CCSCCEEEECSCGGG
T ss_pred EEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE-CCeEEeCHHHHHHHHHHcCCCEEEEecCchh
Confidence 689999999999999984 34567755 6699887 6543 11 355543 35556555 4899999998743
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00074 Score=58.04 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=46.7
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCCcch--hH----HHHHC------CCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--CD----ELVAH------GATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~~--~~----~l~~~------g~~~~~~~~~~~~~~dvvi 61 (291)
||+|+|+ |.+|..++..|+.... ++.++|.++.. ++ .+..- .....++..+.++++|+||
T Consensus 26 KVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~advVv 105 (345)
T 4h7p_A 26 KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAI 105 (345)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCSEEE
T ss_pred EEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCCEEE
Confidence 8999996 9999999999987543 69999987532 22 12221 1334567788899999999
Q ss_pred Eec
Q 022834 62 GML 64 (291)
Q Consensus 62 i~v 64 (291)
++-
T Consensus 106 i~a 108 (345)
T 4h7p_A 106 MCG 108 (345)
T ss_dssp ECC
T ss_pred ECC
Confidence 975
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.13 E-value=8.8e-05 Score=63.79 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=52.2
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCC---CcEEEEc-CC-cchhHHHHHCCCcccC-CHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNG---FKVTVWN-RT-LSKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g---~~V~~~~-r~-~~~~~~l~~~g~~~~~-~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
|||+|+| .|.+|..+.+.|.+++ ++++.+. ++ ..+.-.+....+.+.+ +. +...++|+||.|+|.... .+.
T Consensus 4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~-~~~~~vDvVf~a~g~~~s-~~~ 81 (336)
T 2r00_A 4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEE-FDWSQVHIALFSAGGELS-AKW 81 (336)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGG-CCGGGCSEEEECSCHHHH-HHH
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCCh-HHhcCCCEEEECCCchHH-HHH
Confidence 5899999 8999999999998874 3555443 32 2110001111111211 11 223579999999976543 333
Q ss_pred HhccCccccccCCCcEEEEcCCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. + .++..|..+||.|..
T Consensus 82 a---~---~~~~~G~~vId~s~~ 98 (336)
T 2r00_A 82 A---P---IAAEAGVVVIDNTSH 98 (336)
T ss_dssp H---H---HHHHTTCEEEECSST
T ss_pred H---H---HHHHcCCEEEEcCCc
Confidence 3 2 234467789998876
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0011 Score=56.92 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=54.7
Q ss_pred eEEEEecChhhHHHHHHHHhC-CCcEEE-EcC--CcchhHHHHHC----C----C---------------ccc--CCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-GFKVTV-WNR--TLSKCDELVAH----G----A---------------TVG--GSPAE 52 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g~~V~~-~~r--~~~~~~~l~~~----g----~---------------~~~--~~~~~ 52 (291)
||||+|+|++|..+.+.|.++ +.+|.. .++ +++....+.+. | . .+. .++++
T Consensus 5 kVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~~ 84 (335)
T 1u8f_O 5 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSK 84 (335)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred EEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHHH
Confidence 899999999999999998864 467654 454 55555544431 1 0 111 25555
Q ss_pred HH---hhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 53 VI---KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 53 ~~---~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+. .++|+||.|+|...+.+.+ ..++..|..+|++|..
T Consensus 85 l~~~~~~vDvV~eatg~~~~~e~a-------~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 85 IKWGDAGAEYVVESTGVFTTMEKA-------GAHLQGGAKRVIISAP 124 (335)
T ss_dssp CCTTTTTCCEEEECSSSCCSHHHH-------GGGGGGTCSEEEESSC
T ss_pred CccccCCCCEEEECCCchhhHHHH-------HHHHhCCCeEEEeccC
Confidence 42 4789999999875543322 2334456555665654
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00042 Score=59.91 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=53.1
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCC-CcEEEEc-CCcchhHHHHH--------------CCCcccC-CHHHHHhhCCEEEE
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNG-FKVTVWN-RTLSKCDELVA--------------HGATVGG-SPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g-~~V~~~~-r~~~~~~~l~~--------------~g~~~~~-~~~~~~~~~dvvii 62 (291)
|||+|+| +|.+|..+.+.|.++. .++..+. .+...-+.+.+ ....+.+ ++++ +.++|+||+
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf~ 83 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVLS 83 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEEE
T ss_pred cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEEE
Confidence 4799999 7999999999998754 4666553 22121111210 1122222 3344 368999999
Q ss_pred ecCCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 63 ~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
|+|...+. +.. + .++..|..|||.|..
T Consensus 84 atp~~~s~-~~a---~---~~~~aG~~VId~s~~ 110 (350)
T 2ep5_A 84 ALPNELAE-SIE---L---ELVKNGKIVVSNASP 110 (350)
T ss_dssp CCCHHHHH-HHH---H---HHHHTTCEEEECSST
T ss_pred CCChHHHH-HHH---H---HHHHCCCEEEECCcc
Confidence 99775443 333 2 223467779998865
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0012 Score=54.26 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=29.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 379999999999999999999996 789998764
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00081 Score=57.63 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=47.3
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCC--c-----EEEEcCCcc--hhH----HHHHCC------CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGF--K-----VTVWNRTLS--KCD----ELVAHG------ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~--~-----V~~~~r~~~--~~~----~l~~~g------~~~~~~~~~~~~~~dvv 60 (291)
|||+|+| +|.+|..++..|+..|. + +.++|+++. +++ .+.+-. +....+..+.+++||+|
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDvV 83 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA 83 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCEE
Confidence 5899999 79999999999998775 5 999999642 332 222211 23345667788999999
Q ss_pred EEec
Q 022834 61 IGML 64 (291)
Q Consensus 61 ii~v 64 (291)
|++-
T Consensus 84 vitA 87 (333)
T 5mdh_A 84 ILVG 87 (333)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9985
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.001 Score=58.01 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=53.7
Q ss_pred CeEEEEecChhhHHH-HHHHHhCCCcEEEEcCCcchhHHHHHCC------------------Cccc-C---CHHHHHhhC
Q 022834 1 MEVGFLGLGIMGKAI-SMNLLRNGFKVTVWNRTLSKCDELVAHG------------------ATVG-G---SPAEVIKKC 57 (291)
Q Consensus 1 mkI~iIG~G~mG~~l-a~~l~~~g~~V~~~~r~~~~~~~l~~~g------------------~~~~-~---~~~~~~~~~ 57 (291)
||+..+|+|++|..+ +..|.++|++|++.|++....+.++++| ++.. + ..-+.+.++
T Consensus 1 mkavhfGaGniGRGfig~~l~~~g~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~~i~~a 80 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQV 80 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHTTCEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHHHHTTC
T ss_pred CcEEEECCCccchhhHHHHHHHcCCeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHHHHcCC
Confidence 899999999999555 5566789999999999998889988753 1111 1 123455689
Q ss_pred CEEEEecCCHHHHHHHH
Q 022834 58 TITIGMLADPAAALSVV 74 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~ 74 (291)
|+|.+++ .+..++.+.
T Consensus 81 dlitT~v-G~~~l~~i~ 96 (382)
T 3h2z_A 81 DLVTTAV-GPVVLERIA 96 (382)
T ss_dssp SEEEECC-CHHHHHHTH
T ss_pred CEEEECC-CcccHHHHH
Confidence 9999999 555555544
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00042 Score=59.35 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=47.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc----cCC---HHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GGS---PAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~----~~~---~~~~~~~~dvvii~vp 65 (291)
|||.|.|+ |.+|..++..|.+.|++|++.+|++++.+.+.+.++.. ..+ ..++++++|+||-+..
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 68999985 99999999999999999999999887765544334322 112 3345667899988763
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00013 Score=63.34 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=52.3
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCc---EEEE-cCCc-chhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFK---VTVW-NRTL-SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~---V~~~-~r~~-~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||+||| .|..|..|.+.|.+++|+ +... +++. .+.-.+......+.+...+...++|+||.|+|... ..+..
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-s~~~a 81 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSST-SAKYA 81 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHH-HHHHH
T ss_pred cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECCChHh-HHHHH
Confidence 4899999 699999999999998773 3333 2221 11000110111111111123568999999997643 33333
Q ss_pred hccCccccccCCCcEEEEcCCC
Q 022834 75 FDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+. ++..|..+||+|..
T Consensus 82 ---~~---~~~~G~~vIDlSa~ 97 (366)
T 3pwk_A 82 ---PY---AVKAGVVVVDNTSY 97 (366)
T ss_dssp ---HH---HHHTTCEEEECSST
T ss_pred ---HH---HHHCCCEEEEcCCc
Confidence 22 24567889999875
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00046 Score=60.51 Aligned_cols=34 Identities=38% Similarity=0.744 Sum_probs=32.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|||.|||+|..|..+|..|+++|++|++++++++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 8999999999999999999999999999998654
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0017 Score=57.82 Aligned_cols=98 Identities=21% Similarity=0.292 Sum_probs=62.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-C---cEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-F---KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~---~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||.|||+|.||+.++..|+++. + +|++.|++.... +..+.. ...++...+ +...+++++
T Consensus 14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~------------~~~~~~-g~~~~~~~V-dadnv~~~l-- 77 (480)
T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV------------DVAQQY-GVSFKLQQI-TPQNYLEVI-- 77 (480)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC------------CHHHHH-TCEEEECCC-CTTTHHHHT--
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhh------------hHHhhc-CCceeEEec-cchhHHHHH--
Confidence 58999999999999999999864 4 688888764432 222222 234444555 445555555
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEccc
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (291)
..+. +++++||+.+-. .....+.+...+.|+.|+|...
T Consensus 78 -~aLl---~~~DvVIN~s~~--~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 78 -GSTL---EENDFLIDVSIG--ISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp -GGGC---CTTCEEEECCSS--SCHHHHHHHHHHHTCEEEESSC
T ss_pred -HHHh---cCCCEEEECCcc--ccCHHHHHHHHHcCCCEEECCC
Confidence 3333 345788875533 2334455566677999997764
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00092 Score=57.50 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=49.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCc----chhH---HHHHCCCccc-------CCHHHHHh--hCCEEEEe
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL----SKCD---ELVAHGATVG-------GSPAEVIK--KCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~----~~~~---~l~~~g~~~~-------~~~~~~~~--~~dvvii~ 63 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|++ ++.+ .+...++.+. .+..++++ ++|+||.+
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~ 90 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVST 90 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEEC
Confidence 57999998 9999999999999999999999976 3333 2334454331 23345667 89999998
Q ss_pred cCC
Q 022834 64 LAD 66 (291)
Q Consensus 64 vp~ 66 (291)
.+.
T Consensus 91 a~~ 93 (346)
T 3i6i_A 91 VGG 93 (346)
T ss_dssp CCG
T ss_pred Cch
Confidence 843
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00042 Score=57.85 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=50.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHHHCCCccc----CC---HHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATVG----GS---PAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~~~~----~~---~~~~~~~~dvvii~vp 65 (291)
|+|.|.|+ |.+|..++..|.+. |++|++.+|++++.+.+...++.+. .+ ..++++++|+||.+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 78999987 99999999999998 9999999999888776665554321 12 3345567898887763
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00086 Score=56.50 Aligned_cols=66 Identities=21% Similarity=0.353 Sum_probs=47.8
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcc------hhH---HHHHCCCccc----C---CHHHHHhhCCEEEEe
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS------KCD---ELVAHGATVG----G---SPAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~------~~~---~l~~~g~~~~----~---~~~~~~~~~dvvii~ 63 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|++. +.+ .+...|+.+. . +..++++++|+||.+
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~~ 84 (308)
T 1qyc_A 5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIST 84 (308)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEEC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEEC
Confidence 47999986 99999999999999999999999743 222 2233454331 1 234566789999988
Q ss_pred cCC
Q 022834 64 LAD 66 (291)
Q Consensus 64 vp~ 66 (291)
.+.
T Consensus 85 a~~ 87 (308)
T 1qyc_A 85 VGS 87 (308)
T ss_dssp CCG
T ss_pred Ccc
Confidence 743
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00031 Score=58.70 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=45.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-------cCCHHHHHhh-CCEEEEec
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKK-CTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~-~dvvii~v 64 (291)
|||.|.|+|.+|..++..|.+.|++|++.+|++++.. .++.. ..+..++++. +|+||-+.
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMP----AGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCC----TTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccc----cCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 5899999999999999999999999999999876532 22221 1122344555 89998876
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00023 Score=61.27 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=51.3
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCC---cEEEE-cCC-cchhHHHHHCCCcccC-CHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGF---KVTVW-NRT-LSKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~---~V~~~-~r~-~~~~~~l~~~g~~~~~-~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
|||+|+| .|.+|..+.+.|.+++| ++..+ +++ ..+.-.+....+.+.+ ++++ ..++|+||+|+|... ..+.
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~-~~~~DvV~~a~g~~~-s~~~ 84 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFD-FSSVGLAFFAAAAEV-SRAH 84 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCC-GGGCSEEEECSCHHH-HHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHH-hcCCCEEEEcCCcHH-HHHH
Confidence 5899999 79999999999987665 34444 432 1110001101111111 2222 468999999997643 3333
Q ss_pred HhccCccccccCCCcEEEEcCCCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
. + .++..|..+||+|...
T Consensus 85 a---~---~~~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 85 A---E---RARAAGCSVIDLSGAL 102 (340)
T ss_dssp H---H---HHHHTTCEEEETTCTT
T ss_pred H---H---HHHHCCCEEEEeCCCC
Confidence 3 2 2234566788887653
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00084 Score=56.56 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=48.8
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCc-------chhHHH---HHCCCccc----CC---HHHHHhhCCEEEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL-------SKCDEL---VAHGATVG----GS---PAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~-------~~~~~l---~~~g~~~~----~~---~~~~~~~~dvvii 62 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|++ ++.+.+ ...++.+. .+ ..++++.+|+||.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 82 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVIC 82 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred cEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEEE
Confidence 57999986 9999999999999999999999986 444332 33454321 22 3456678999998
Q ss_pred ecCC
Q 022834 63 MLAD 66 (291)
Q Consensus 63 ~vp~ 66 (291)
+.+.
T Consensus 83 ~a~~ 86 (307)
T 2gas_A 83 AAGR 86 (307)
T ss_dssp CSSS
T ss_pred CCcc
Confidence 8753
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00031 Score=60.81 Aligned_cols=87 Identities=20% Similarity=0.178 Sum_probs=53.1
Q ss_pred eEEEEe-cChhhHHHHHHHHhCC-CcEEEE-cCCc--chhHHHH-----------HCCCcccC-CHHHHHhhCCEEEEec
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNG-FKVTVW-NRTL--SKCDELV-----------AHGATVGG-SPAEVIKKCTITIGML 64 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g-~~V~~~-~r~~--~~~~~l~-----------~~g~~~~~-~~~~~~~~~dvvii~v 64 (291)
||+||| .|..|..|.+.|.++- .++... +++. .++.... .....+.. +.+ .+.++|+||+|+
T Consensus 9 kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf~a~ 87 (359)
T 4dpk_A 9 KAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIFSPL 87 (359)
T ss_dssp EEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEEECC
T ss_pred eEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEEECC
Confidence 799999 6999999999887754 355543 3332 2222210 01122221 233 346899999999
Q ss_pred CCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 65 ADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 65 p~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
|.... .+.. +. ++..|..+||+|+.
T Consensus 88 p~~~s-~~~a---~~---~~~~G~~vIDlSa~ 112 (359)
T 4dpk_A 88 PQGAA-GPVE---EQ---FAKEGFPVISNSPD 112 (359)
T ss_dssp CTTTH-HHHH---HH---HHHTTCEEEECSST
T ss_pred ChHHH-HHHH---HH---HHHCCCEEEEcCCC
Confidence 87543 3333 22 24578899999876
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00031 Score=60.81 Aligned_cols=87 Identities=20% Similarity=0.178 Sum_probs=53.2
Q ss_pred eEEEEe-cChhhHHHHHHHHhCC-CcEEEE-cCCc--chhHHHH-----------HCCCcccC-CHHHHHhhCCEEEEec
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNG-FKVTVW-NRTL--SKCDELV-----------AHGATVGG-SPAEVIKKCTITIGML 64 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g-~~V~~~-~r~~--~~~~~l~-----------~~g~~~~~-~~~~~~~~~dvvii~v 64 (291)
||+||| .|..|..|.+.|.++- .++... +++. .++.... .....+.. +.+ .+.++|+||+|+
T Consensus 9 kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf~a~ 87 (359)
T 4dpl_A 9 KAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIFSPL 87 (359)
T ss_dssp EEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEEECC
T ss_pred eEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEEECC
Confidence 799999 6999999999887754 355543 3332 2222210 01122221 233 346899999999
Q ss_pred CCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 65 ADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 65 p~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
|.... .+.. +. ++..|..+||+|+.
T Consensus 88 p~~~s-~~~a---~~---~~~~G~~vIDlSa~ 112 (359)
T 4dpl_A 88 PQGAA-GPVE---EQ---FAKEGFPVISNSPD 112 (359)
T ss_dssp CTTTH-HHHH---HH---HHHTTCEEEECSST
T ss_pred ChHHH-HHHH---HH---HHHCCCEEEEcCCC
Confidence 87543 3333 22 24578899999876
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0054 Score=53.46 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=54.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc-------CCHHHHHh-----hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~~dvvii~vp~~~ 68 (291)
+|.|+|+|.+|...+..+...|. +|+..++++++.+.+.+.|+... .+..+.+. ..|++|-|+..+.
T Consensus 196 ~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~ 275 (378)
T 3uko_A 196 NVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVS 275 (378)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCHH
Confidence 68999999999999988888898 79999999999988887776431 22233222 3789999887755
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
.+...+
T Consensus 276 ~~~~~~ 281 (378)
T 3uko_A 276 VMRAAL 281 (378)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00079 Score=57.27 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=46.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC--cEEEEcC--CcchhHH----HHH--C----CCcccC---CHHHHHhhCCEEEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNR--TLSKCDE----LVA--H----GATVGG---SPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~--~V~~~~r--~~~~~~~----l~~--~----g~~~~~---~~~~~~~~~dvvii 62 (291)
|||+|+|+ |.+|..++..|...|+ ++.++|+ ++++++. +.+ . ...+.. +..++++++|+||+
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~ 80 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence 89999999 9999999999998875 6889998 6554432 221 0 112221 24677899999999
Q ss_pred ec
Q 022834 63 ML 64 (291)
Q Consensus 63 ~v 64 (291)
+.
T Consensus 81 ~A 82 (313)
T 1hye_A 81 TS 82 (313)
T ss_dssp CC
T ss_pred CC
Confidence 86
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0012 Score=56.13 Aligned_cols=65 Identities=23% Similarity=0.290 Sum_probs=48.0
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCc------chhHH---HHHCCCccc----C---CHHHHHhhCCEEEEe
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL------SKCDE---LVAHGATVG----G---SPAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~------~~~~~---l~~~g~~~~----~---~~~~~~~~~dvvii~ 63 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|++ ++.+. +...++.+. . +..++++.+|+||.+
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~~ 84 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVISA 84 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred cEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence 57999985 9999999999999999999999986 23332 233454321 2 344567789999998
Q ss_pred cC
Q 022834 64 LA 65 (291)
Q Consensus 64 vp 65 (291)
.+
T Consensus 85 a~ 86 (321)
T 3c1o_A 85 LP 86 (321)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0012 Score=55.89 Aligned_cols=64 Identities=27% Similarity=0.371 Sum_probs=48.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcc-hhHH---HHHCCCccc----C---CHHHHHhhCCEEEEecC
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS-KCDE---LVAHGATVG----G---SPAEVIKKCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~---l~~~g~~~~----~---~~~~~~~~~dvvii~vp 65 (291)
+|.|.|+ |.+|..++..|.+.|++|++.+|+++ +.+. +...++.+. . +..++++++|+||.+.+
T Consensus 13 ~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA 88 (318)
T ss_dssp CEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred eEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 7999985 99999999999999999999999874 4332 334454431 1 23456678999998874
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0011 Score=55.71 Aligned_cols=65 Identities=29% Similarity=0.318 Sum_probs=49.0
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC-CcEEEEcCCcchh--HHHHHCCCcc----cCC---HHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRTLSKC--DELVAHGATV----GGS---PAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g-~~V~~~~r~~~~~--~~l~~~g~~~----~~~---~~~~~~~~dvvii~vp 65 (291)
|+|.|.|+ |.+|..++..|.+.| ++|++.+|++++. +.+...++.+ ..+ ..++++.+|+||.+.+
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 47999987 999999999999988 9999999987764 3444555433 122 3456678999998874
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0012 Score=55.81 Aligned_cols=65 Identities=26% Similarity=0.282 Sum_probs=47.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCc-----chhHHH---HHCCCccc----C---CHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL-----SKCDEL---VAHGATVG----G---SPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~-----~~~~~l---~~~g~~~~----~---~~~~~~~~~dvvii~v 64 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|++ ++.+.+ ...++.+. . +..++++++|+||.+.
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a 84 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL 84 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEECC
Confidence 57999985 9999999999999999999999984 343332 23454321 2 2345667899999887
Q ss_pred C
Q 022834 65 A 65 (291)
Q Consensus 65 p 65 (291)
+
T Consensus 85 ~ 85 (313)
T 1qyd_A 85 A 85 (313)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00091 Score=61.71 Aligned_cols=68 Identities=24% Similarity=0.188 Sum_probs=50.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--C-CcccCCHHHH-HhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--G-ATVGGSPAEV-IKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--g-~~~~~~~~~~-~~~~dvvii~vp~~~ 68 (291)
++|.|+|+|.+|..+++.|.+.|++|++.|+++++++.+..- | ..-...+.++ ++++|.++++++++.
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~ 420 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDS 420 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCch
Confidence 578999999999999999999999999999999887654210 1 0111112222 357999999997754
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0092 Score=51.93 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=53.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc-------CCHHHHHh-----hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~~dvvii~vp~~~ 68 (291)
+|.|+|+|.+|...+..+...|. +|+..++++++.+.+++.|+... .+..+.+. ..|+||-|+..+.
T Consensus 198 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~ 277 (376)
T 1e3i_A 198 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQ 277 (376)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCCCHH
Confidence 68999999999999998888898 79999999999988887776421 12222222 3788888886544
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
.+...+
T Consensus 278 ~~~~~~ 283 (376)
T 1e3i_A 278 TLKAAV 283 (376)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00099 Score=55.90 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=35.0
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
++.|+| +|.+|.+++..|++.|++|++++|++++.+.+.
T Consensus 121 ~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~ 160 (287)
T 1lu9_A 121 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA 160 (287)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHH
Confidence 678889 999999999999999999999999988777654
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00073 Score=58.62 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=61.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc-------chhHHHHHC-----C-CcccCCHHHHHhhCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------SKCDELVAH-----G-ATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~-------~~~~~l~~~-----g-~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
||.|+|+|..|.++++.+...|. +|+++|++- +.+..+... . .....++.|+++.+|++|=+....
T Consensus 190 kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sapg 269 (398)
T 2a9f_A 190 SIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVSAPG 269 (398)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECCSTT
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecCCCC
Confidence 89999999999999999999998 899999873 222222111 1 112457889999999877654221
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCCH
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
.-.++++ +...++.+|+.+||-.|
T Consensus 270 l~T~EmV-------k~Ma~~pIIfalsNPt~ 293 (398)
T 2a9f_A 270 VLKAEWI-------SKMAARPVIFAMANPIP 293 (398)
T ss_dssp CCCHHHH-------HTSCSSCEEEECCSSSC
T ss_pred CCCHHHH-------HhhCCCCEEEECCCCCc
Confidence 2223344 33458899999999865
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00099 Score=57.02 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=46.5
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCCc--chhH----HHHHCC------CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKCD----ELVAHG------ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~~--~~~~----~l~~~g------~~~~~~~~~~~~~~dvv 60 (291)
|||.|+|+ |.+|+.++..|.+.|+ +|+++|+++ ++.+ .+.+.. +....+..++++++|+|
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~V 84 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA 84 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCEE
Confidence 58999997 9999999999999886 899999864 2222 222211 12224567778899999
Q ss_pred EEec
Q 022834 61 IGML 64 (291)
Q Consensus 61 ii~v 64 (291)
|.+.
T Consensus 85 ih~A 88 (327)
T 1y7t_A 85 LLVG 88 (327)
T ss_dssp EECC
T ss_pred EECC
Confidence 9875
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0027 Score=54.74 Aligned_cols=73 Identities=15% Similarity=0.039 Sum_probs=52.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc-----CCHHHHHh------hCCEEEEecCCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK------KCTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~~------~~dvvii~vp~~~~ 69 (291)
+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|.... .+..+.+. ..|++|-|++.+..
T Consensus 170 ~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~~ 249 (348)
T 2d8a_A 170 SVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKA 249 (348)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCCHHH
Confidence 68999999999999999988999 89999999988887776665321 12222221 36888888765444
Q ss_pred HHHHH
Q 022834 70 ALSVV 74 (291)
Q Consensus 70 ~~~v~ 74 (291)
+...+
T Consensus 250 ~~~~~ 254 (348)
T 2d8a_A 250 LEQGL 254 (348)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0097 Score=51.75 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=52.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc-------CCHHHHHh-----hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~~dvvii~vp~~~ 68 (291)
+|.|+|+|.+|...+..+...|. +|+..++++++.+.+++.|+... .+..+.+. ..|++|-|++.+.
T Consensus 194 ~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~ 273 (374)
T 2jhf_A 194 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLD 273 (374)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCCCHH
Confidence 68899999999999998888998 79999999999988887775421 12222222 3688888876544
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
.+...+
T Consensus 274 ~~~~~~ 279 (374)
T 2jhf_A 274 TMVTAL 279 (374)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0014 Score=56.21 Aligned_cols=28 Identities=18% Similarity=0.459 Sum_probs=23.5
Q ss_pred eEEEEecChhhHHHHHHHHhC-CCcEEEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-GFKVTVW 29 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g~~V~~~ 29 (291)
||||+|+|++|..+.+.|.++ +.+|...
T Consensus 5 kVgI~G~GrIGr~l~R~l~~~p~vevvaI 33 (337)
T 3e5r_O 5 KIGINGFGRIGRLVARVALQSEDVELVAV 33 (337)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEE
T ss_pred EEEEECcCHHHHHHHHHHhCCCCeEEEEE
Confidence 899999999999999999875 4565544
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.004 Score=50.14 Aligned_cols=79 Identities=11% Similarity=0.001 Sum_probs=50.2
Q ss_pred CeEE-EEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVG-FLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~-iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
||+. |.| .|.+|.+++..|++.|++|.+.+|++++.+.+.+.- -.+...+..=+.+...++.++ +
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~v~~~~---~ 67 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL----------SNNVGYRARDLASHQEVEQLF---E 67 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC----------SSCCCEEECCTTCHHHHHHHH---H
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH----------hhccCeEeecCCCHHHHHHHH---H
Confidence 6644 444 589999999999999999999999988877665431 012233333344556666666 4
Q ss_pred ccccccCCCcEEEEcCC
Q 022834 79 GVLEQICPGKGYIDMST 95 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~ 95 (291)
++.... +++|++..
T Consensus 68 ~~~~~~---d~lv~~Ag 81 (230)
T 3guy_A 68 QLDSIP---STVVHSAG 81 (230)
T ss_dssp SCSSCC---SEEEECCC
T ss_pred HHhhcC---CEEEEeCC
Confidence 443322 56666543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0093 Score=51.85 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=53.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc-------CCHHHHHh-----hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~~dvvii~vp~~~ 68 (291)
+|.|+|+|.+|...+......|. +|+..++++++.+.+++.|+... .+..+.+. ..|+||-|+..+.
T Consensus 194 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~ 273 (373)
T 1p0f_A 194 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIE 273 (373)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCHH
Confidence 68999999999999988888888 79999999999988888776421 12223222 4788888886655
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
.+...+
T Consensus 274 ~~~~~~ 279 (373)
T 1p0f_A 274 TMMNAL 279 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 454444
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0033 Score=56.08 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=70.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchh--HHHHHCCCccc--CCHHHHHhhCCEEEEec--C-CHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC--DELVAHGATVG--GSPAEVIKKCTITIGML--A-DPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~--~~l~~~g~~~~--~~~~~~~~~~dvvii~v--p-~~~~~~~v 73 (291)
|||.|||.|..|.+.++.|.+.||+|+++|...... ..+. .|+.+. ....+.++.+|.||++. | +...+...
T Consensus 6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~~~a 84 (439)
T 2x5o_A 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAA 84 (439)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHHHHH
Confidence 589999999999999999999999999998754332 3344 576653 22345556899988874 2 11222221
Q ss_pred Hhc-c---Cc---cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE
Q 022834 74 VFD-K---GG---VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 74 ~~~-~---~~---l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
... . .+ +....+...+-|.-|++...+..-+...+.+.|...
T Consensus 85 ~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~ 133 (439)
T 2x5o_A 85 ADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV 133 (439)
T ss_dssp HHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCCE
T ss_pred HHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCE
Confidence 100 0 11 111222223445556667777777788887776543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.012 Score=51.05 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=53.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc-------CCHHHHHh-----hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~~dvvii~vp~~~ 68 (291)
+|.|+|+|.+|...+..+...|. +|+..++++++.+.+++.|+... .+..+.+. ..|++|-++..+.
T Consensus 195 ~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~ 274 (374)
T 1cdo_A 195 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVG 274 (374)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCCCHH
Confidence 68899999999999998888998 79999999999988887775421 12333222 3788888886544
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
.+...+
T Consensus 275 ~~~~~~ 280 (374)
T 1cdo_A 275 VMRNAL 280 (374)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0026 Score=53.29 Aligned_cols=130 Identities=15% Similarity=0.215 Sum_probs=71.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-------CCcccCCHHHHHh--hCCEEEEecCCH----
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-------GATVGGSPAEVIK--KCTITIGMLADP---- 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-------g~~~~~~~~~~~~--~~dvvii~vp~~---- 67 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.=....+..+ |..-+....+.++ +.++-+.+.+..
T Consensus 38 ~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~l~~~ 117 (292)
T 3h8v_A 38 AVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTV 117 (292)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCCTTSH
T ss_pred eEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecccCCcH
Confidence 79999999999999999999995 799999875333233221 1111112222221 456666665321
Q ss_pred HHHHHHHhccCccc--cc--cCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecC
Q 022834 68 AAALSVVFDKGGVL--EQ--ICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG 138 (291)
Q Consensus 68 ~~~~~v~~~~~~l~--~~--l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 138 (291)
..+++.+ +.+. .. ...-++|||++-. ..+-..+.+.....+..+++..+.+. ...|...++..+
T Consensus 118 ~~~~~~~---~~~~~~~l~~~~~~DlVid~~Dn-~~~R~~in~~c~~~~~Pli~~gv~~~---~~~Gqv~~~~pg 185 (292)
T 3h8v_A 118 ENFQHFM---DRISNGGLEEGKPVDLVLSCVDN-FEARMTINTACNELGQTWMESGVSEN---AVSGHIQLIIPG 185 (292)
T ss_dssp HHHHHHH---HHHHHBSSSTTBCCSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEECTT---SSEEEEEEECTT
T ss_pred HHHHHHh---hhhcccccccCCCCCEEEECCcc-hhhhhHHHHHHHHhCCCEEEeeeecc---eeEEEEEEECCC
Confidence 2233332 1110 00 1344788887655 33445566666677888887765542 124555555443
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0021 Score=55.72 Aligned_cols=64 Identities=11% Similarity=0.240 Sum_probs=43.8
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCC--c---EEEEcCCcch----hHHHH---HCC-------CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGF--K---VTVWNRTLSK----CDELV---AHG-------ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~--~---V~~~~r~~~~----~~~l~---~~g-------~~~~~~~~~~~~~~dvv 60 (291)
+||+|+| +|.+|.+++..|+..+. + +.+++.+.++ ++-.. .++ +.+..+..+.++++|+|
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDvV 112 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWA 112 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCEE
Confidence 4899999 79999999999998764 2 7775543333 22111 112 23445667888999999
Q ss_pred EEec
Q 022834 61 IGML 64 (291)
Q Consensus 61 ii~v 64 (291)
|++-
T Consensus 113 Vita 116 (375)
T 7mdh_A 113 LLIG 116 (375)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9975
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0013 Score=55.60 Aligned_cols=62 Identities=10% Similarity=0.217 Sum_probs=44.2
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-----CCcccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~~dvvii~v 64 (291)
|||.|.| +|.+|..++..|.+.|++|++.+|++...+ +... .+. ..+..++++++|+||-+.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a 70 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLA 70 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEcc
Confidence 5899998 599999999999999999999999855444 3210 122 233455667889998876
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0042 Score=53.30 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=51.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-C----CHHHHH----hhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-G----SPAEVI----KKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-~----~~~~~~----~~~dvvii~vp~~~~~~~ 72 (291)
+|.|+|+|.+|...+..+...|.+|++.++++++.+.+.+.|.... + +..+.+ ...|++|-++..+..++.
T Consensus 167 ~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 246 (339)
T 1rjw_A 167 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQS 246 (339)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHHHHH
Confidence 6899999999999999999999999999999999888877665321 1 222211 246777777755444444
Q ss_pred HH
Q 022834 73 VV 74 (291)
Q Consensus 73 v~ 74 (291)
.+
T Consensus 247 ~~ 248 (339)
T 1rjw_A 247 AY 248 (339)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0018 Score=55.90 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=63.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-CCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-GSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+|.|+|+|.+|...+..+...|.+|++.++++++.+.+.+.|.... .+.+++.+..|++|-|++.+..+...+ +
T Consensus 179 ~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~~~---~-- 253 (348)
T 3two_A 179 KVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYL---K-- 253 (348)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHHHHH---T--
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHHHHH---H--
Confidence 6889999999999999988899999999999999998888775432 333333336899999986654555555 2
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
.++++..++.++..
T Consensus 254 --~l~~~G~iv~~G~~ 267 (348)
T 3two_A 254 --LLTYNGDLALVGLP 267 (348)
T ss_dssp --TEEEEEEEEECCCC
T ss_pred --HHhcCCEEEEECCC
Confidence 33455555655443
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.01 Score=51.10 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=58.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc------CC-HHHH---H-----hhCCEEEEecCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG------GS-PAEV---I-----KKCTITIGMLAD 66 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~------~~-~~~~---~-----~~~dvvii~vp~ 66 (291)
+|.|+|+|.+|...+..+...|.+|++.++++++.+.+.+.|.... .+ .+++ . ...|++|-+++.
T Consensus 171 ~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g~ 250 (352)
T 1e3j_A 171 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGN 250 (352)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEECCCC
Confidence 6889999999999999888899999999999999888877775321 11 1122 1 137888888866
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEcC
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~s 94 (291)
+..+...+ ..++++..++..+
T Consensus 251 ~~~~~~~~-------~~l~~~G~iv~~G 271 (352)
T 1e3j_A 251 EKCITIGI-------NITRTGGTLMLVG 271 (352)
T ss_dssp HHHHHHHH-------HHSCTTCEEEECS
T ss_pred HHHHHHHH-------HHHhcCCEEEEEe
Confidence 44444444 2334555555544
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00033 Score=60.20 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=52.7
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCc---EEEEc-CCc-c-hhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFK---VTVWN-RTL-S-KCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~---V~~~~-r~~-~-~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
|||+||| .|..|..|.+.|.++.|+ +.... ++. - ++. +......+.+...+..+++|+||.|+|... ..+.
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~-~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-s~~~ 79 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA-FRGQEIEVEDAETADPSGLDIALFSAGSAM-SKVQ 79 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE-ETTEEEEEEETTTSCCTTCSEEEECSCHHH-HHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee-ecCCceEEEeCCHHHhccCCEEEECCChHH-HHHH
Confidence 6999999 699999999999987654 44443 221 1 111 111111111111123468999999997644 3434
Q ss_pred HhccCccccccCCCcEEEEcCCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. +. ++..|..|||+|..
T Consensus 80 a---~~---~~~~G~~vID~Sa~ 96 (344)
T 3tz6_A 80 A---PR---FAAAGVTVIDNSSA 96 (344)
T ss_dssp H---HH---HHHTTCEEEECSST
T ss_pred H---HH---HHhCCCEEEECCCc
Confidence 3 22 24467899999875
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0012 Score=58.56 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=61.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCC---cEEEEc----CC--cchhHH---HH-------HC-CCc-ccCCHHHHHhhCCEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF---KVTVWN----RT--LSKCDE---LV-------AH-GAT-VGGSPAEVIKKCTIT 60 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~---~V~~~~----r~--~~~~~~---l~-------~~-g~~-~~~~~~~~~~~~dvv 60 (291)
||.|+|+|.+|.+++..|.+.|. +|+++| |+ ..+.+. +. .. +.. ...++.+.++++|++
T Consensus 188 rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aDVl 267 (439)
T 2dvm_A 188 TLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVL 267 (439)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCSEE
T ss_pred EEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhccCCEE
Confidence 78999999999999999999997 799999 87 222111 21 11 111 134677888899999
Q ss_pred EEecCC--HHHHHHHHhccCccccccCCCcEEEEcCCCCH
Q 022834 61 IGMLAD--PAAALSVVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 61 ii~vp~--~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
|-++|. ...-++.+ + .+.++.+|+|+++-.+
T Consensus 268 InaT~~~~G~~~~e~v---~----~m~~~~iVfDLynP~~ 300 (439)
T 2dvm_A 268 ISFTRPGPGVIKPQWI---E----KMNEDAIVFPLANPVP 300 (439)
T ss_dssp EECSCCCSSSSCHHHH---T----TSCTTCEEEECCSSSC
T ss_pred EEcCCCccCCCChHHH---H----hcCCCCEEEECCCCCC
Confidence 999976 22112233 2 2446779999965543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.011 Score=51.29 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=52.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc-------CCHHHHHh-----hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~~dvvii~vp~~~ 68 (291)
+|.|+|+|.+|...+..+...|. +|+..++++++.+.+.+.|+... .+..+.+. ..|++|-|++.+.
T Consensus 193 ~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~ 272 (373)
T 2fzw_A 193 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVK 272 (373)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCCcHH
Confidence 68899999999999998888898 79999999999888777675421 12223222 3788888886644
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
.+...+
T Consensus 273 ~~~~~~ 278 (373)
T 2fzw_A 273 VMRAAL 278 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0016 Score=56.50 Aligned_cols=88 Identities=15% Similarity=0.256 Sum_probs=52.4
Q ss_pred CeEEEEec-ChhhHHHHH-HHHhCCC---cEEEE-cCCcc-hhHHHHHCCCcccC--CHHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISM-NLLRNGF---KVTVW-NRTLS-KCDELVAHGATVGG--SPAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~-~l~~~g~---~V~~~-~r~~~-~~~~l~~~g~~~~~--~~~~~~~~~dvvii~vp~~~~~~ 71 (291)
|||+|||+ |..|..|.+ .|.++.+ ++... .++.- +...+......+.+ +.+ ..+++|++|.|+|... ..
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~~~~~~~~~-~~~~~Dvvf~a~~~~~-s~ 78 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIE-SLKQLDAVITCQGGSY-TE 78 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCCSSSCCCBCEETTCHH-HHTTCSEEEECSCHHH-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCcCHHHhCCCceEEEecCChh-HhccCCEEEECCChHH-HH
Confidence 89999997 999999999 8887764 44444 33311 11112111122221 233 3578999999997643 33
Q ss_pred HHHhccCccccccCCC--cEEEEcCCC
Q 022834 72 SVVFDKGGVLEQICPG--KGYIDMSTV 96 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~--~~vv~~s~~ 96 (291)
+.. +.+ +..| +.|||.|+.
T Consensus 79 ~~~---~~~---~~~G~k~~VID~ss~ 99 (370)
T 3pzr_A 79 KVY---PAL---RQAGWKGYWIDAAST 99 (370)
T ss_dssp HHH---HHH---HHTTCCCEEEECSST
T ss_pred HHH---HHH---HHCCCCEEEEeCCch
Confidence 333 222 3345 489998874
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0016 Score=54.19 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=48.2
Q ss_pred eEEEEec-ChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHHHCCCccc----C---CHHHHHhhCCEEEEecC
Q 022834 2 EVGFLGL-GIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATVG----G---SPAEVIKKCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~~~~----~---~~~~~~~~~dvvii~vp 65 (291)
||.|.|+ |.+|..++..|.+. |++|++.+|++++.+.+...++.+. . +..++++++|+||.+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 5889987 99999999999998 9999999999887776665554321 1 23345567888887763
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.015 Score=50.10 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=58.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcc-cC-C---HHHH---H-----hhCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATV-GG-S---PAEV---I-----KKCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~-~~-~---~~~~---~-----~~~dvvii~vp~~ 67 (291)
+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|... .+ + ..+. + +..|+||-+++.+
T Consensus 174 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~ 253 (356)
T 1pl8_A 174 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAE 253 (356)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECCCCh
Confidence 68999999999999988888898 8999999999888888777642 11 1 1221 1 1378888888665
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcC
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s 94 (291)
..+...+ ..++++..++..+
T Consensus 254 ~~~~~~~-------~~l~~~G~iv~~G 273 (356)
T 1pl8_A 254 ASIQAGI-------YATRSGGTLVLVG 273 (356)
T ss_dssp HHHHHHH-------HHSCTTCEEEECS
T ss_pred HHHHHHH-------HHhcCCCEEEEEe
Confidence 4444444 2334555555444
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0022 Score=57.51 Aligned_cols=104 Identities=14% Similarity=0.088 Sum_probs=72.1
Q ss_pred eEEEEecC----hhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGLG----IMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~G----~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
+|+|||++ .+|..+.++|.+.| +.|+.+++..+.. .|.+++.+..++.+..|++++++|. ..+.+++
T Consensus 10 siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i-----~G~~~y~sl~~lp~~~Dlavi~vp~-~~~~~~v-- 81 (457)
T 2csu_A 10 GIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPK-RFVKDTL-- 81 (457)
T ss_dssp EEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCH-HHHHHHH--
T ss_pred eEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE-----CCEeccCCHHHcCCCCCEEEEecCH-HHHHHHH--
Confidence 69999998 88999999999885 6777777653322 3888888998888789999999966 5566666
Q ss_pred cCccccccCCCcEEEEcCCCCHH-------HHHHHHHHHHhcCCcEE
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHE-------TSIKISRAITSKGGHFL 116 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~-------~~~~~~~~~~~~~~~~~ 116 (291)
+++...- - +.++..+.+.++ ..+++.+...+.|+.++
T Consensus 82 -~e~~~~G-i-~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~vi 125 (457)
T 2csu_A 82 -IQCGEKG-V-KGVVIITAGFGETGEEGKREEKELVEIAHKYGMRII 125 (457)
T ss_dssp -HHHHHHT-C-CEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred -HHHHHcC-C-CEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEE
Confidence 4444321 1 344555655432 14556666666677665
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0034 Score=53.97 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=25.1
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEEEEc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVWN 30 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~~~~ 30 (291)
+||+|+|+|++|..+.+.|.++ .++|...+
T Consensus 18 ikVgI~G~G~iGr~llR~l~~~p~veivain 48 (354)
T 3cps_A 18 GTLGINGFGRIGRLVLRACMERNDITVVAIN 48 (354)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred eEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence 4899999999999999999876 56766553
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0017 Score=54.56 Aligned_cols=35 Identities=31% Similarity=0.361 Sum_probs=32.5
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
|||.|.|+ |-+|+.++..|.++||+|++..|+++.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~ 36 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP 36 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 99999987 999999999999999999999998654
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0029 Score=53.99 Aligned_cols=39 Identities=31% Similarity=0.368 Sum_probs=34.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|++++.+.+
T Consensus 12 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 51 (342)
T 1y1p_A 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL 51 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence 57899987 9999999999999999999999987765544
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0028 Score=57.83 Aligned_cols=113 Identities=13% Similarity=0.042 Sum_probs=70.7
Q ss_pred CeEEEEecChhhHH-HHHHHHhCCCcEEEEcCCc--chhHHHHHCCCccc--CCHHHHHhhCCEEEEe--cCC-HHHHHH
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTL--SKCDELVAHGATVG--GSPAEVIKKCTITIGM--LAD-PAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~~g~~V~~~~r~~--~~~~~l~~~g~~~~--~~~~~~~~~~dvvii~--vp~-~~~~~~ 72 (291)
++|.|||.|..|.+ +|..|.+.|++|+++|.+. ...+.|.+.|+.+. .+.+++..++|+||+. +|. ...+..
T Consensus 20 ~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~l~~ 99 (524)
T 3hn7_A 20 MHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDVIEY 99 (524)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHHHHH
T ss_pred CEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHHHHH
Confidence 58999999999996 7888999999999999864 34567778887764 3444444568998875 332 223332
Q ss_pred HHh-cc-----Cccc-cccCC-Cc-EEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 73 VVF-DK-----GGVL-EQICP-GK-GYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 73 v~~-~~-----~~l~-~~l~~-~~-~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
... +. .++. ..+.+ .. +-|.-|++...+..-+...+...|.
T Consensus 100 a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~ 149 (524)
T 3hn7_A 100 MLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGI 149 (524)
T ss_dssp HHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 221 00 0111 11222 23 4455556666677777777776653
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00095 Score=54.16 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=31.8
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCC--cEEEEcCCcchh
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGF--KVTVWNRTLSKC 36 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~--~V~~~~r~~~~~ 36 (291)
|+|.|.| .|.+|..++..|++.|+ +|++.+|++++.
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~ 57 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTF 57 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCC
T ss_pred CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCc
Confidence 4788888 59999999999999999 999999987654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0022 Score=52.10 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=44.8
Q ss_pred CeEEEEe-cChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHHHCCCcc----c---CCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATV----G---GSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~~~----~---~~~~~~~~~~dvvii~v 64 (291)
|+|.|.| .|.+|..++..|.+. |++|++.+|++++.+.+ ..++.. . .+..++++++|+||.+.
T Consensus 5 ~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a 77 (253)
T 1xq6_A 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILT 77 (253)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEec
Confidence 5788897 599999999999999 89999999988766544 222221 1 12334556678777765
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0018 Score=56.19 Aligned_cols=88 Identities=16% Similarity=0.235 Sum_probs=51.5
Q ss_pred CeEEEEe-cChhhHHHHH-HHHhCCCc---EEEEcC-Ccch-hHHHHHCCCccc--CCHHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLG-LGIMGKAISM-NLLRNGFK---VTVWNR-TLSK-CDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~-~l~~~g~~---V~~~~r-~~~~-~~~l~~~g~~~~--~~~~~~~~~~dvvii~vp~~~~~~ 71 (291)
|||+|+| .|.+|..+.+ .|.+++++ +.+... +..+ ...+....+.+. .++++ .+++|+||.|+|... ..
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~~-s~ 79 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGDY-TN 79 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHHH-HH
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCchh-HH
Confidence 4899999 8999999999 66666553 343332 2111 111111222322 23444 468999999997543 34
Q ss_pred HHHhccCccccccCCCc--EEEEcCCC
Q 022834 72 SVVFDKGGVLEQICPGK--GYIDMSTV 96 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~--~vv~~s~~ 96 (291)
+.. +.+ +..|. +|||.|+.
T Consensus 80 ~~a---~~~---~~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 80 EIY---PKL---RESGWQGYWIDAASS 100 (367)
T ss_dssp HHH---HHH---HHTTCCCEEEECSST
T ss_pred HHH---HHH---HHCCCCEEEEcCChh
Confidence 444 223 23443 89998865
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0017 Score=56.30 Aligned_cols=64 Identities=20% Similarity=0.335 Sum_probs=47.8
Q ss_pred CeEEEEe-cChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHH-CCCcc-----c---CCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVA-HGATV-----G---GSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~-~g~~~-----~---~~~~~~~~~~dvvii~v 64 (291)
|||.|.| +|.+|..++..|.+. |++|++.+|++++...+.. .++.+ . .+..++++++|+||-+.
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A 99 (372)
T 3slg_A 25 KKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLV 99 (372)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECB
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcC
Confidence 5899998 599999999999998 9999999998877665543 23221 1 12344667899999764
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00096 Score=58.12 Aligned_cols=88 Identities=16% Similarity=0.281 Sum_probs=52.5
Q ss_pred eEEEEe-cChhhHHHHHHHHhCC-CcEE-EE-cCC-cc-hhHHHH-----------HCCCcccC-CHHHHHhhCCEEEEe
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNG-FKVT-VW-NRT-LS-KCDELV-----------AHGATVGG-SPAEVIKKCTITIGM 63 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g-~~V~-~~-~r~-~~-~~~~l~-----------~~g~~~~~-~~~~~~~~~dvvii~ 63 (291)
||+||| .|..|..|.+.|.++- .++. ++ +++ .- ++.... .....+.+ +..+..+++|+||+|
T Consensus 21 kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~Dvvf~a 100 (381)
T 3hsk_A 21 KAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDVVFSG 100 (381)
T ss_dssp EEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGCSEEEEC
T ss_pred EEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcccCCEEEEC
Confidence 799999 5999999999998764 3564 43 232 11 121110 01122211 122135789999999
Q ss_pred cCCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 64 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+|... ..+.. +.+ +..|..|||+|+.
T Consensus 101 lp~~~-s~~~~---~~~---~~~G~~VIDlSa~ 126 (381)
T 3hsk_A 101 LDADV-AGDIE---KSF---VEAGLAVVSNAKN 126 (381)
T ss_dssp CCHHH-HHHHH---HHH---HHTTCEEEECCST
T ss_pred CChhH-HHHHH---HHH---HhCCCEEEEcCCc
Confidence 97644 34444 222 3468889999876
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0019 Score=52.57 Aligned_cols=33 Identities=21% Similarity=0.502 Sum_probs=30.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
.|.|||+|.-|...|..|+++|++|+++++.+.
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~ 36 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG 36 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 599999999999999999999999999998653
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0072 Score=48.30 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=55.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
||.+|+|+ |+||..+.....+.|+++. .+++..+ ++. .++|++|=.+ .|..+.+.+ +
T Consensus 13 ~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~-------------~~l----~~~DVvIDFT-~P~a~~~~~---~ 71 (228)
T 1vm6_A 13 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-------------EEL----DSPDVVIDFS-SPEALPKTV---D 71 (228)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-------------EEC----SCCSEEEECS-CGGGHHHHH---H
T ss_pred ceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc-------------ccc----cCCCEEEECC-CHHHHHHHH---H
Confidence 89999998 9999999887767788865 4576432 111 3689888455 445555555 2
Q ss_pred ccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEEEcc
Q 022834 79 GVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.+ +..+..+|..+|+. ....+.+.. +.+. +.++-+|
T Consensus 72 ~~---~~~g~~~ViGTTG~~~~~~~~l~~-~a~~-~~vv~ap 108 (228)
T 1vm6_A 72 LC---KKYRAGLVLGTTALKEEHLQMLRE-LSKE-VPVVQAY 108 (228)
T ss_dssp HH---HHHTCEEEECCCSCCHHHHHHHHH-HTTT-SEEEECS
T ss_pred HH---HHcCCCEEEeCCCCCHHHHHHHHH-HHhh-CCEEEec
Confidence 22 23455666666664 443344433 2222 4444444
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0074 Score=51.75 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=52.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-----CCHHHHHh----hCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK----KCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~~----~~dvvii~vp~~~~~~~ 72 (291)
+|.|+|+|.+|...+..+...|.+|+..++++++.+.+.+.|.... .+..+.+. ..|++|.++..+..++.
T Consensus 169 ~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~~~~ 248 (340)
T 3s2e_A 169 WVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKAFSQ 248 (340)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHHHHH
Confidence 6889999999999999988899999999999999988887775421 12222221 35777777655554444
Q ss_pred HH
Q 022834 73 VV 74 (291)
Q Consensus 73 v~ 74 (291)
.+
T Consensus 249 ~~ 250 (340)
T 3s2e_A 249 AI 250 (340)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.004 Score=53.22 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=29.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 36 ~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 36 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 79999999999999999999995 699998865
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0068 Score=50.55 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=57.0
Q ss_pred CeEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
+++.|||-+ -+|..++..|.+.|..|+++... +.++.+..+++|++|.++..+.-++
T Consensus 180 k~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~--------------T~dl~~~~~~ADIvV~A~G~p~~i~-------- 237 (303)
T 4b4u_A 180 KHAVVVGRSAILGKPMAMMLLQANATVTICHSR--------------TQNLPELVKQADIIVGAVGKAELIQ-------- 237 (303)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHHTCSEEEECSCSTTCBC--------
T ss_pred CEEEEEeccccccchHHHHHHhcCCEEEEecCC--------------CCCHHHHhhcCCeEEeccCCCCccc--------
Confidence 368899975 56999999999999999988653 2367788899999999997754221
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 238 -~d~vk~GavVIDVGin 253 (303)
T 4b4u_A 238 -KDWIKQGAVVVDAGFH 253 (303)
T ss_dssp -GGGSCTTCEEEECCCB
T ss_pred -cccccCCCEEEEecee
Confidence 2357899999998765
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0035 Score=52.95 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=38.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhh--CCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--~dvvii~v 64 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|+++... .....+.-..+..++++. +|+||-+.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A 68 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCA 68 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECC
Confidence 58999987 99999999999999999999998754311 111111112344455554 89998876
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.01 Score=54.65 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=52.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCccc----CCHHHH----HhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVG----GSPAEV----IKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~----~~~~~~----~~~~dvvii~vp~~~ 68 (291)
++|.|+|+|.+|..++..|.+.|++|+++|.++++.+.+.+. +..+. .+.+.+ ++++|.+++ ++++.
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~D~ 203 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-NLSDP 203 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-CSCHH
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-eCCcH
Confidence 468999999999999999999999999999999999999887 75431 222221 357898887 54543
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=57.15 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=57.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCC---cEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGF---KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~---~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
||.|||. |..|..-+..+..-|. +|++||+++... |... +.+.++|+||-|+.-......++ .
T Consensus 216 kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~~~-----~~i~~aDivIn~vlig~~aP~Lv-t- 282 (394)
T 2qrj_A 216 TVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------GGPF-----DEIPQADIFINCIYLSKPIAPFT-N- 282 (394)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------CSCC-----THHHHSSEEEECCCCCSSCCCSC-C-
T ss_pred eEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------CCch-----hhHhhCCEEEECcCcCCCCCccc-C-
Confidence 7899999 9999999999999997 899999875221 3222 34568999999985311111111 1
Q ss_pred Ccccccc-CCCcEEEEcCCC
Q 022834 78 GGVLEQI-CPGKGYIDMSTV 96 (291)
Q Consensus 78 ~~l~~~l-~~~~~vv~~s~~ 96 (291)
++..+.. +++.+|||+|.-
T Consensus 283 ~e~v~~m~k~gsVIVDVA~D 302 (394)
T 2qrj_A 283 MEKLNNPNRRLRTVVDVSAD 302 (394)
T ss_dssp HHHHCCTTCCCCEEEETTCC
T ss_pred HHHHhcCcCCCeEEEEEecC
Confidence 2223345 789999999865
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.014 Score=51.33 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=49.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc-----CCHHHHHh------hCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK------KCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~~------~~dvvii~vp~~ 67 (291)
+|.|+|+|.+|...+..+...|. +|+..++++++.+.+.+.|...+ .+..+.+. ..|++|-|+..+
T Consensus 216 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~~ 293 (404)
T 3ip1_A 216 NVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVP 293 (404)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSCH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCCc
Confidence 68899999999999998888998 89999999999888777675421 12222221 377888877665
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0087 Score=52.02 Aligned_cols=73 Identities=22% Similarity=0.189 Sum_probs=50.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc-----CCHHHHHh--------hCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK--------KCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~~--------~~dvvii~vp~~ 67 (291)
+|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|+... .+..+.+. ..|+||-|+..+
T Consensus 185 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G~~ 264 (370)
T 4ej6_A 185 TVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVA 264 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECSCCH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECCCCH
Confidence 68899999999999988888998 78899999988887776665421 12223222 257777777544
Q ss_pred HHHHHHH
Q 022834 68 AAALSVV 74 (291)
Q Consensus 68 ~~~~~v~ 74 (291)
..+...+
T Consensus 265 ~~~~~~~ 271 (370)
T 4ej6_A 265 ETVKQST 271 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.005 Score=52.91 Aligned_cols=73 Identities=14% Similarity=0.101 Sum_probs=50.1
Q ss_pred eEEEEecChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHHHCCCcccCCHH---HH---Hh---hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATVGGSPA---EV---IK---KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~~~~~~~~---~~---~~---~~dvvii~vp~~~~~ 70 (291)
+|.|+|+|.+|...+..+... |.+|+..++++++.+.+.+.|....-+.. +. +. ..|+||-|+..+..+
T Consensus 173 ~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~ 252 (344)
T 2h6e_A 173 VVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTEETT 252 (344)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCChHHH
Confidence 689999999999999888888 99999999999888877776654321211 11 11 356777776554344
Q ss_pred HHHH
Q 022834 71 LSVV 74 (291)
Q Consensus 71 ~~v~ 74 (291)
...+
T Consensus 253 ~~~~ 256 (344)
T 2h6e_A 253 YNLG 256 (344)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.012 Score=50.53 Aligned_cols=73 Identities=16% Similarity=0.068 Sum_probs=52.0
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc------CCHHHHHh-----hCCEEEEecCCHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG------GSPAEVIK-----KCTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~------~~~~~~~~-----~~dvvii~vp~~~~ 69 (291)
+|.|+|+ |.+|..++..+...|.+|++.++++++.+.+.+.|.... .+..+.+. ..|++|-++..+..
T Consensus 172 ~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~ 251 (347)
T 2hcy_A 172 WVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAA 251 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSCHHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCcHHH
Confidence 6889999 999999999999999999999999888877776664321 12333332 36777777755444
Q ss_pred HHHHH
Q 022834 70 ALSVV 74 (291)
Q Consensus 70 ~~~v~ 74 (291)
++..+
T Consensus 252 ~~~~~ 256 (347)
T 2hcy_A 252 IEAST 256 (347)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 44444
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0041 Score=56.36 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=70.7
Q ss_pred CeEEEEecChhhHH-HHHHHHhCCCcEEEEcCCcc-hhHHHHHCCCcccC--CHHHHHhhCCEEEEe--cCC-HHHHHHH
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG--SPAEVIKKCTITIGM--LAD-PAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~--~~~~~~~~~dvvii~--vp~-~~~~~~v 73 (291)
+||.|||.|..|.+ +|+.|.+.|++|+++|.... ..+.|.+.|+.+.. +.+ .+.++|+||+. +|. ...+...
T Consensus 23 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~-~~~~~d~vV~Spgi~~~~p~~~~a 101 (494)
T 4hv4_A 23 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPE-NVLDASVVVVSTAISADNPEIVAA 101 (494)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGG-GGTTCSEEEECTTSCTTCHHHHHH
T ss_pred CEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHH-HcCCCCEEEECCCCCCCCHHHHHH
Confidence 37999999999996 99999999999999997543 34567777876643 333 35679999876 332 1222222
Q ss_pred Hhc-c-----Cccc-cccCCCc-EEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 74 VFD-K-----GGVL-EQICPGK-GYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 74 ~~~-~-----~~l~-~~l~~~~-~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
... . .+++ ...+... +-|.-|++...+..-+...+...|.
T Consensus 102 ~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 149 (494)
T 4hv4_A 102 REARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL 149 (494)
T ss_dssp HHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence 110 0 0111 1222223 4455556677777777778877764
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0048 Score=53.28 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=47.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchh--HHHHHC-CCcc-----cCC---HHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC--DELVAH-GATV-----GGS---PAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~--~~l~~~-g~~~-----~~~---~~~~~~~~dvvii~vp 65 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|++++. +.+... ++.. ..+ ..++++.+|+||.+..
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~ 82 (352)
T 1xgk_A 6 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT 82 (352)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCC
Confidence 57999985 9999999999999999999999987765 444432 3211 113 3455678999997763
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0043 Score=51.01 Aligned_cols=82 Identities=11% Similarity=0.003 Sum_probs=55.8
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|.+|.+++|++++++.+.++ ..+ ...+++.+. +.++.+++.++
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~-------i~~--~g~~~~~~~~Dvt~~~~v~~~~--- 75 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQE-------LRG--MGKEVLGVKADVSKKKDVEEFV--- 75 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTSHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHHH---
Confidence 67777 668999999999999999999999998887765431 111 122333333 44667777777
Q ss_pred CccccccCCCcEEEEcCC
Q 022834 78 GGVLEQICPGKGYIDMST 95 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~ 95 (291)
+++...+.+=+++|+...
T Consensus 76 ~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 76 RRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHcCCCCEEEECCc
Confidence 555555555567777553
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0019 Score=56.32 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=44.9
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc----cC---CHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GG---SPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~----~~---~~~~~~~~~dvvii~v 64 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|+++........++.+ .. +..++++.+|+||-+.
T Consensus 30 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A 101 (379)
T 2c5a_A 30 LKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 101 (379)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence 57999987 99999999999999999999999866543222222221 11 2334556788888775
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.015 Score=52.08 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=48.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc-chhHHHHHC-CCccc---CCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAH-GATVG---GSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l~~~-g~~~~---~~~~~~~~~~dvvii~vp~~ 67 (291)
++|.|||.|.+|..-+..|.+.|.+|++++.+. +..+.+.+. ++.+. .+. +.+.++|+||.++.++
T Consensus 13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~-~~l~~~~lVi~at~~~ 83 (457)
T 1pjq_A 13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE-TLLDSCWLAIAATDDD 83 (457)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCG-GGGTTCSEEEECCSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCc-cccCCccEEEEcCCCH
Confidence 579999999999999999999999999998753 233444432 34332 122 3356899999988665
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0035 Score=54.48 Aligned_cols=88 Identities=20% Similarity=0.332 Sum_probs=52.3
Q ss_pred CeEEEEec-ChhhHHHHH-HHHhCCC---cEEEE-cCCcc-hhHHHHHCCCccc--CCHHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISM-NLLRNGF---KVTVW-NRTLS-KCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~-~l~~~g~---~V~~~-~r~~~-~~~~l~~~g~~~~--~~~~~~~~~~dvvii~vp~~~~~~ 71 (291)
|||+|||+ |.+|..|.+ .|.++.+ ++..+ .++.- +...+......+. .+.+ ...++|+||.|+|... ..
T Consensus 5 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~v~~~~~~~-~~~~vDvvf~a~~~~~-s~ 82 (377)
T 3uw3_A 5 MNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNETTLKDATSID-DLKKCDVIITCQGGDY-TN 82 (377)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTSBCCTTCCSCCBCEETTCHH-HHHTCSEEEECSCHHH-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCCCHHHcCCCceEEEeCCChh-HhcCCCEEEECCChHH-HH
Confidence 79999987 999999999 7877764 44444 33211 1111221112222 1233 3578999999997643 34
Q ss_pred HHHhccCccccccCCC--cEEEEcCCC
Q 022834 72 SVVFDKGGVLEQICPG--KGYIDMSTV 96 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~--~~vv~~s~~ 96 (291)
+.. +.+ +..| +.|||.|+.
T Consensus 83 ~~~---~~~---~~~G~k~~VID~ss~ 103 (377)
T 3uw3_A 83 DVF---PKL---RAAGWNGYWIDAASS 103 (377)
T ss_dssp HHH---HHH---HHTTCCSEEEECSST
T ss_pred HHH---HHH---HHCCCCEEEEeCCcc
Confidence 443 222 3345 489998874
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0021 Score=53.34 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=30.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|+|.|||+|.+|..-+..|.+.|++|++++.+.
T Consensus 14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 579999999999999999999999999998654
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0038 Score=53.30 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=47.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHC-CCc-----ccC---CHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-GAT-----VGG---SPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~-g~~-----~~~---~~~~~~~~~dvvii~v 64 (291)
|||.|.|+ |.+|..++..|.+. |++|++.+|++++.+.+... ++. +.+ ...++++++|+||-+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A 75 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence 89999987 99999999999998 89999999988766543321 221 121 1344667899998764
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0032 Score=54.80 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=59.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc--CCHHHHH----hhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVI----KKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~----~~~dvvii~vp~~~~~~~v~~ 75 (291)
+|.|+|+|.+|...+..+...|.+|++.++++++.+.+.+.|.... .+..+.. ...|++|-|++.+..+...+
T Consensus 197 ~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~- 275 (369)
T 1uuf_A 197 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFT- 275 (369)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHHH-
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHHHHHH-
Confidence 6889999999999999888899999999999999888877675421 1111211 35789998886543455444
Q ss_pred ccCccccccCCCcEEEEcCC
Q 022834 76 DKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~ 95 (291)
+ .++++..++..+.
T Consensus 276 --~----~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 276 --T----LLKRDGTMTLVGA 289 (369)
T ss_dssp --T----TEEEEEEEEECCC
T ss_pred --H----HhccCCEEEEecc
Confidence 2 2334445555543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0024 Score=55.46 Aligned_cols=65 Identities=25% Similarity=0.253 Sum_probs=47.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH-HCCCccc---CCHHHH---HhhCCEEEEecCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVG---GSPAEV---IKKCTITIGMLAD 66 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-~~g~~~~---~~~~~~---~~~~dvvii~vp~ 66 (291)
+|.|+|+|.+|...+..+...|.+|++.++++++.+.+. +.|.... .+.+.+ ....|+||-+++.
T Consensus 190 ~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~ 261 (366)
T 1yqd_A 190 HIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSA 261 (366)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSS
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCc
Confidence 688999999999999999999999999999998887766 5564321 121111 1246777777754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0078 Score=47.19 Aligned_cols=42 Identities=19% Similarity=0.049 Sum_probs=35.8
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG 43 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g 43 (291)
+|.|+| +|.+|..++..+...|.+|++.++++++.+.+.+.|
T Consensus 41 ~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g 83 (198)
T 1pqw_A 41 RVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG 83 (198)
T ss_dssp EEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC
T ss_pred EEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC
Confidence 678889 699999999999999999999999988777665544
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0094 Score=53.93 Aligned_cols=112 Identities=15% Similarity=0.174 Sum_probs=69.4
Q ss_pred CeEEEEecChhhHH-HHHHHHhCCCcEEEEcCCcch-hHHHHHCCCccc--CCHHHHHhhCCEEEEec--CC-HHHHHHH
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVG--GSPAEVIKKCTITIGML--AD-PAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~--~~~~~~~~~~dvvii~v--p~-~~~~~~v 73 (291)
+||.|||.|..|.+ +|+.|.+.|++|+++|..... .+.+.+.|+.+. .+.. .++.+|+||+.- |. ...+...
T Consensus 20 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~-~~~~a~~vv~s~~i~~~~p~~~~a 98 (491)
T 2f00_A 20 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRPE-NVRDASVVVVSSAISADNPEIVAA 98 (491)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGG-GGTTCSEEEECTTCCTTCHHHHHH
T ss_pred CEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCCCEEECCCCHH-HcCCCCEEEECCCCCCCCHHHHHH
Confidence 47999999999997 999999999999999976533 345667787664 2333 346789888753 21 1212211
Q ss_pred Hh-c------cCccccccCCCc-EEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 74 VF-D------KGGVLEQICPGK-GYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 74 ~~-~------~~~l~~~l~~~~-~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
.. + .+-+...+...+ +-|.-|++...+..-+...+...|.
T Consensus 99 ~~~~ipvl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~ 146 (491)
T 2f00_A 99 HEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGL 146 (491)
T ss_dssp HHTTCCEEEHHHHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcEEEHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 10 0 011111222223 3355566777777778888877664
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0041 Score=53.26 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=43.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-------cCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvvii~v 64 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|+++. .++.. ..+..++++++|+||-+.
T Consensus 20 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 85 (347)
T 4id9_A 20 HMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG------TGGEEVVGSLEDGQALSDAIMGVSAVLHLG 85 (347)
T ss_dssp -CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS------SCCSEEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC------CCccEEecCcCCHHHHHHHHhCCCEEEECC
Confidence 68999987 999999999999999999999998754 22221 112345667889988765
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0062 Score=55.90 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=29.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 328 rVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~ 360 (615)
T 4gsl_A 328 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 360 (615)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 79999999999999999999995 699999865
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.00028 Score=60.51 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=50.6
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcE---EEE-cCCcc--hhHHHHHCCCcccC-CHHHHHhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKV---TVW-NRTLS--KCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V---~~~-~r~~~--~~~~l~~~g~~~~~-~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
|||+|+| .|.+|..+.+.|.+.+|++ ... ++..+ ++. +....+.+.+ ++.+ . ++|+||.|+|.... .+
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~-~~g~~i~v~~~~~~~-~-~~DvV~~a~g~~~s-~~ 76 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLA-FRGEEIPVEPLPEGP-L-PVDLVLASAGGGIS-RA 76 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEE-ETTEEEEEEECCSSC-C-CCSEEEECSHHHHH-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEE-EcCceEEEEeCChhh-c-CCCEEEECCCccch-HH
Confidence 8999999 9999999999999777752 222 21110 000 0000111111 2223 3 78999999975433 33
Q ss_pred HHhccCccccccCCCcEEEEcCCC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.. + .++..|..+||.|..
T Consensus 77 ~a---~---~~~~~G~~vId~s~~ 94 (331)
T 2yv3_A 77 KA---L---VWAEGGALVVDNSSA 94 (331)
T ss_dssp HH---H---HHHHTTCEEEECSSS
T ss_pred HH---H---HHHHCCCEEEECCCc
Confidence 33 2 234467889998876
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0045 Score=53.10 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=30.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|++.
T Consensus 26 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 60 (351)
T 3ruf_A 26 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST 60 (351)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 58999985 99999999999999999999998654
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.019 Score=52.34 Aligned_cols=112 Identities=11% Similarity=0.143 Sum_probs=65.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCC--------cccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGA--------TVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~--------~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
+|.|||+|.+|+.++.+|+..|. +++++|.+.=....+..+.. ..+....+.++ +.++-+.+.+. .+
T Consensus 34 ~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~--~~ 111 (531)
T 1tt5_A 34 HVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE--SP 111 (531)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESS--CH
T ss_pred eEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCC--Cc
Confidence 79999999999999999999996 79999987655555554321 11111112221 23444444422 23
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.++. +.....+..-++||+++ ........+.+.....++.++++.
T Consensus 112 ~~~~---~~~~~~~~~~DvVi~~~-d~~~~r~~ln~~c~~~~iplI~~~ 156 (531)
T 1tt5_A 112 ENLL---DNDPSFFCRFTVVVATQ-LPESTSLRLADVLWNSQIPLLICR 156 (531)
T ss_dssp HHHH---HSCGGGGGGCSEEEEES-CCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred chhh---hhhHHHhcCCCEEEEeC-CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3332 11222333346777764 445555666666666677777654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.012 Score=47.56 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=50.3
Q ss_pred EEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 3 I~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+.|.| .|.+|.+++..|++.|++|.+.+|++++.+.+.+. .-..+..+..=+.+...++.++ +++.
T Consensus 6 vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~v~~~~---~~~~ 72 (235)
T 3l6e_A 6 IIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELL----------LGNAVIGIVADLAHHEDVDVAF---AAAV 72 (235)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HGGGEEEEECCTTSHHHHHHHH---HHHH
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hcCCceEEECCCCCHHHHHHHH---HHHH
Confidence 44555 58999999999999999999999998877655431 1111122222234555666666 4444
Q ss_pred cccCCCcEEEEcCCC
Q 022834 82 EQICPGKGYIDMSTV 96 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~ 96 (291)
....+=+++|+....
T Consensus 73 ~~~g~id~lvnnAg~ 87 (235)
T 3l6e_A 73 EWGGLPELVLHCAGT 87 (235)
T ss_dssp HHHCSCSEEEEECCC
T ss_pred HhcCCCcEEEECCCC
Confidence 433344566665443
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0026 Score=53.59 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=33.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD 37 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~ 37 (291)
|||.|.|+ |.+|..++..|.+.|++|++.+|+++...
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 38 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRR 38 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCch
Confidence 89999988 99999999999999999999999776543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.011 Score=47.69 Aligned_cols=84 Identities=15% Similarity=0.248 Sum_probs=52.4
Q ss_pred CeEEEE-e-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhc
Q 022834 1 MEVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iI-G-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~ 76 (291)
||+.+| | .|.+|.+++..|++.|++|.+.+|+.++.+.+.+. ..+. ...++.++. +.+...+++++
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~-~~~~~~~~~~D~~~~~~v~~~~-- 71 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHE-------LMQE-QGVEVFYHHLDVSKAESVEEFS-- 71 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHH-HCCCEEEEECCTTCHHHHHHHC--
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhh-cCCeEEEEEeccCCHHHHHHHH--
Confidence 455544 5 58999999999999999999999998877655421 1101 123444433 34556666666
Q ss_pred cCccccccCCCcEEEEcCC
Q 022834 77 KGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~ 95 (291)
+++.....+=+++|++..
T Consensus 72 -~~~~~~~g~id~li~~Ag 89 (235)
T 3l77_A 72 -KKVLERFGDVDVVVANAG 89 (235)
T ss_dssp -C-HHHHHSSCSEEEECCC
T ss_pred -HHHHHhcCCCCEEEECCc
Confidence 555544434456676543
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0029 Score=57.64 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=46.4
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp 65 (291)
|||.|.| +|.+|..++..|.+.|++|++.+|++.+.+.+. ....+...+.++++|+||-+..
T Consensus 148 m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~---~d~~~~~~~~l~~~D~Vih~A~ 210 (516)
T 3oh8_A 148 LTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRF---WDPLNPASDLLDGADVLVHLAG 210 (516)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEE---CCTTSCCTTTTTTCSEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcccee---ecccchhHHhcCCCCEEEECCC
Confidence 7899998 599999999999999999999999876542110 1112233455678999998763
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0094 Score=53.68 Aligned_cols=112 Identities=17% Similarity=0.149 Sum_probs=69.1
Q ss_pred CeEEEEecChhhHH-HHHHHHhCCCcEEEEcCCcch-hHHHHHCCCccc--CCHHHHHhhCCEEEEec--CC-HHHHHHH
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVG--GSPAEVIKKCTITIGML--AD-PAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~--~~~~~~~~~~dvvii~v--p~-~~~~~~v 73 (291)
+||.|||.|..|.+ +|+.|.+.|++|+++|..... .+.+.+.|+.+. .+. +.++.+|+||+.- |. ...+...
T Consensus 19 ~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s~~i~~~~~~~~~a 97 (475)
T 1p3d_A 19 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAE-EHIEGASVVVVSSAIKDDNPELVTS 97 (475)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCG-GGGTTCSEEEECTTSCTTCHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCH-HHcCCCCEEEECCCCCCCCHHHHHH
Confidence 47999999999997 999999999999999976533 345667787664 233 3346789888752 21 1112211
Q ss_pred Hh-c------cCccccccCCCc-EEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 74 VF-D------KGGVLEQICPGK-GYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 74 ~~-~------~~~l~~~l~~~~-~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
.. + .+-+...+...+ +-|.-|++...+..-+...+...|.
T Consensus 98 ~~~~i~vl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~ 145 (475)
T 1p3d_A 98 KQKRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKL 145 (475)
T ss_dssp HHTTCCEEEHHHHHHHHHHTSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcEEEHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 10 0 001111121123 3355566777777878888877663
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.011 Score=51.35 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=50.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc-----CCHHHHHh-----hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK-----KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~~-----~~dvvii~vp~~~~~ 70 (291)
+|.|+|+|.+|...+..+...|. +|+..++++++.+.+++.|.... .+..+.+. ..|+||-++..+..+
T Consensus 193 ~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~~~~ 272 (371)
T 1f8f_A 193 SFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEIL 272 (371)
T ss_dssp EEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCHHHH
Confidence 68999999999999988887888 58999999988887776665321 12222221 367888877654444
Q ss_pred HHHH
Q 022834 71 LSVV 74 (291)
Q Consensus 71 ~~v~ 74 (291)
...+
T Consensus 273 ~~~~ 276 (371)
T 1f8f_A 273 KQGV 276 (371)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.014 Score=47.68 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=49.8
Q ss_pred EEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHh-hCCEEEEec--CCHHHHHHHHhccC
Q 022834 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGML--ADPAAALSVVFDKG 78 (291)
Q Consensus 3 I~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~~dvvii~v--p~~~~~~~v~~~~~ 78 (291)
+.|.| .|.+|.+++..|++.|++|.+.+|++++.+.+.+. ..+.-. .+..+..-+ .+...+++++ +
T Consensus 15 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~ 84 (252)
T 3f1l_A 15 ILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASH-------INEETGRQPQWFILDLLTCTSENCQQLA---Q 84 (252)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHHSCCCEEEECCTTTCCHHHHHHHH---H
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhhcCCCceEEEEecccCCHHHHHHHH---H
Confidence 44455 58999999999999999999999998877654321 111110 122222222 3455666666 4
Q ss_pred ccccccCCCcEEEEcCC
Q 022834 79 GVLEQICPGKGYIDMST 95 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~ 95 (291)
++.....+=+++|++..
T Consensus 85 ~~~~~~g~id~lv~nAg 101 (252)
T 3f1l_A 85 RIAVNYPRLDGVLHNAG 101 (252)
T ss_dssp HHHHHCSCCSEEEECCC
T ss_pred HHHHhCCCCCEEEECCc
Confidence 44444434456666544
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.006 Score=50.14 Aligned_cols=82 Identities=13% Similarity=0.009 Sum_probs=54.2
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|.+|.+.+|+++++++..++ ..+ ...++..+. +.+..+++.++
T Consensus 10 KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~-------l~~--~g~~~~~~~~Dv~~~~~v~~~~--- 77 (255)
T 4g81_D 10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDT-------LTR--KGYDAHGVAFDVTDELAIEAAF--- 77 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHH-------HHH--TTCCEEECCCCTTCHHHHHHHH---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEeeCCCHHHHHHHH---
Confidence 67888 779999999999999999999999998877654321 000 112333332 33566677776
Q ss_pred CccccccCCCcEEEEcCC
Q 022834 78 GGVLEQICPGKGYIDMST 95 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~ 95 (291)
+++...+.+=+++|+...
T Consensus 78 ~~~~~~~G~iDiLVNNAG 95 (255)
T 4g81_D 78 SKLDAEGIHVDILINNAG 95 (255)
T ss_dssp HHHHHTTCCCCEEEECCC
T ss_pred HHHHHHCCCCcEEEECCC
Confidence 555555545567776543
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.004 Score=54.00 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=41.7
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~v 64 (291)
|||.|.| .|.+|..++..|.+.|+ +|+..||+.+ ..+..++++++|+||-+.
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d------------~~~l~~~~~~~d~Vih~a 54 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTK------------EEELESALLKADFIVHLA 54 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCC------------HHHHHHHHHHCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCC------------HHHHHHHhccCCEEEECC
Confidence 8999998 69999999999999999 9999998411 013445566789998775
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0075 Score=52.27 Aligned_cols=44 Identities=25% Similarity=0.108 Sum_probs=38.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT 45 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~ 45 (291)
+|.|+|+|.+|...+..+...|.+|++.++++++.+.+.+.|+.
T Consensus 192 ~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 235 (363)
T 3uog_A 192 RVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD 235 (363)
T ss_dssp EEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC
Confidence 68899999999999999988999999999999888877766653
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.012 Score=48.06 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=52.7
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|..+| |.+.+|.+++..|++.|++|.+.+|++++.+.+.+++.. +..+-.=+.++.+++.++ ++
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~-----------~~~~~~Dv~~~~~v~~~v---~~ 68 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPN-----------LFYFHGDVADPLTLKKFV---EY 68 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTT-----------EEEEECCTTSHHHHHHHH---HH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC-----------EEEEEecCCCHHHHHHHH---HH
Confidence 45555 568999999999999999999999998887776654311 111111234566677766 55
Q ss_pred cccccCCCcEEEEcC
Q 022834 80 VLEQICPGKGYIDMS 94 (291)
Q Consensus 80 l~~~l~~~~~vv~~s 94 (291)
+...+.+=+++|+..
T Consensus 69 ~~~~~g~iDiLVNNA 83 (247)
T 3ged_A 69 AMEKLQRIDVLVNNA 83 (247)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 555554546777654
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.015 Score=50.02 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=60.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
+|.|||+|.+|+.++.+|+..|. +++++|.+.=....+..+ |...+....+.++ +.++-+.+.+.. +
T Consensus 38 ~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~--~ 115 (346)
T 1y8q_A 38 RVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTED--I 115 (346)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSC--G
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecc--c
Confidence 79999999999999999999996 799998654222222221 1111111112222 245545444321 1
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEccc
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (291)
.+ .....+..-++||+++ ........+.+.....++.++.+..
T Consensus 116 ~~------~~~~~~~~~dvVv~~~-d~~~~r~~ln~~~~~~~ip~i~~~~ 158 (346)
T 1y8q_A 116 EK------KPESFFTQFDAVCLTC-CSRDVIVKVDQICHKNSIKFFTGDV 158 (346)
T ss_dssp GG------CCHHHHTTCSEEEEES-CCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred Cc------chHHHhcCCCEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEee
Confidence 11 0112233335666653 3455555666666666777776543
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0097 Score=50.80 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=24.3
Q ss_pred CeEEEEecChhhHHHHHHHHhC---CCcEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN---GFKVTVW 29 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~---g~~V~~~ 29 (291)
+||||+|+|++|..+.+.|.++ .++|..+
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivai 32 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAI 32 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 5899999999999999999876 3676644
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.011 Score=50.85 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=38.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT 45 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~ 45 (291)
+|.|+|+|.+|...+..+...|. +|+..++++++.+.+.+.|..
T Consensus 169 ~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 213 (352)
T 3fpc_A 169 TVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT 213 (352)
T ss_dssp CEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence 68899999999999988888898 799999998888877776654
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.011 Score=51.68 Aligned_cols=44 Identities=20% Similarity=0.077 Sum_probs=38.6
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHCCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGAT 45 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~ 45 (291)
+|.|+|+|.+|...+..+...| .+|++.++++++.+.+.+.|..
T Consensus 198 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 242 (380)
T 1vj0_A 198 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD 242 (380)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS
T ss_pred EEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCc
Confidence 6899999999999999988899 6999999999998888776753
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.022 Score=48.54 Aligned_cols=43 Identities=21% Similarity=0.084 Sum_probs=37.7
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCC
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 44 (291)
+|.|.|+ |.+|..++..+...|.+|++.++++++.+.+.+.|.
T Consensus 148 ~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~ 191 (333)
T 1v3u_A 148 TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF 191 (333)
T ss_dssp EEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred EEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC
Confidence 5789998 999999999999999999999999888887766554
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0088 Score=49.65 Aligned_cols=80 Identities=13% Similarity=0.024 Sum_probs=52.3
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+++| |.+.+|.+++..|++.|.+|.+.+|+.++++...++ +-.++-.+-.=+.+..++++++ ++
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~----------~g~~~~~~~~Dv~~~~~v~~~~---~~ 96 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAE----------IGGGAVGIQADSANLAELDRLY---EK 96 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCTTCEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------cCCCeEEEEecCCCHHHHHHHH---HH
Confidence 67877 568899999999999999999999998887765432 1111111212234666677766 55
Q ss_pred cccccCCCcEEEEcC
Q 022834 80 VLEQICPGKGYIDMS 94 (291)
Q Consensus 80 l~~~l~~~~~vv~~s 94 (291)
+...+.+=+++|+..
T Consensus 97 ~~~~~G~iDiLVNNA 111 (273)
T 4fgs_A 97 VKAEAGRIDVLFVNA 111 (273)
T ss_dssp HHHHHSCEEEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 554443435666544
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.012 Score=51.81 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=59.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEE-EEcCCc---------------chhHHHHHC-C-------CcccCCHHHH-Hh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTL---------------SKCDELVAH-G-------ATVGGSPAEV-IK 55 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~-~~~r~~---------------~~~~~l~~~-g-------~~~~~~~~~~-~~ 55 (291)
++|+|.|.|++|...+..|.+.|.+|+ +.|.++ +.+..+++. | .... +.+++ -.
T Consensus 213 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~~~~~ 291 (421)
T 2yfq_A 213 AKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEEFWTK 291 (421)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------------
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-CccchhcC
Confidence 479999999999999999999999987 667773 444444432 2 1211 22232 23
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+||+++-|.....-..+.. .++ +.++|+...|.. .+ .+..+.+.++|+.|+
T Consensus 292 ~~DIliP~A~~n~i~~~~A---~~l-----~ak~VvEgAN~P-~t-~ea~~il~~~GI~~~ 342 (421)
T 2yfq_A 292 EYDIIVPAALENVITGERA---KTI-----NAKLVCEAANGP-TT-PEGDKVLTERGINLT 342 (421)
T ss_dssp ---CEEECSCSSCSCHHHH---TTC-----CCSEEECCSSSC-SC-HHHHHHHHHHTCEEE
T ss_pred CccEEEEcCCcCcCCcccH---HHc-----CCeEEEeCCccc-cC-HHHHHHHHHCCCEEE
Confidence 7999998874433222233 222 456777766653 23 334455667787654
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0033 Score=54.49 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=60.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC------CHHHHH-hhCCEEEEecCC--HHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG------SPAEVI-KKCTITIGMLAD--PAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~------~~~~~~-~~~dvvii~vp~--~~~~~~ 72 (291)
+|.|+|+|.+|...+..+...|.+|+..++++++.+.+.+.|...+- +..+.+ ...|++|-|++. +..+.
T Consensus 182 ~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~- 260 (360)
T 1piw_A 182 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFN- 260 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCCTT-
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHHHH-
Confidence 68999999999999998888899999999999998888777754321 222222 357999999865 33332
Q ss_pred HHhccCccccccCCCcEEEEcCC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
...+.++++..++..+.
T Consensus 261 ------~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 261 ------IMPKAMKVGGRIVSISI 277 (360)
T ss_dssp ------TGGGGEEEEEEEEECCC
T ss_pred ------HHHHHhcCCCEEEEecC
Confidence 33344555556665543
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.014 Score=48.30 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=50.7
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+.+| |.|.+|.+++..|++.|++|++.+|+++..+.+.+. ..+.-.++..+..=+.+...++.++ ++
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dv~d~~~v~~~~---~~ 98 (270)
T 3ftp_A 29 QVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAA-------FKQAGLEGRGAVLNVNDATAVDALV---ES 98 (270)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHHTCCCEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEEeCCCHHHHHHHH---HH
Confidence 45555 569999999999999999999999998777654321 1111011222222234555666666 44
Q ss_pred cccccCCCcEEEEcCC
Q 022834 80 VLEQICPGKGYIDMST 95 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~ 95 (291)
+...+.+=+++|++..
T Consensus 99 ~~~~~g~iD~lvnnAg 114 (270)
T 3ftp_A 99 TLKEFGALNVLVNNAG 114 (270)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 4443434456666543
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0061 Score=52.87 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=52.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCc---chhHHHHHCCCcccC--CHHHHH----hhCCEEEEecCCHHHH-H
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL---SKCDELVAHGATVGG--SPAEVI----KKCTITIGMLADPAAA-L 71 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~---~~~~~l~~~g~~~~~--~~~~~~----~~~dvvii~vp~~~~~-~ 71 (291)
+|.|+|+|.+|...+..+...|.+|++.++++ ++.+.+.+.|+...+ +..+.+ ...|++|-+++.+..+ +
T Consensus 183 ~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 262 (366)
T 2cdc_A 183 KVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVNILG 262 (366)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHHHHH
Confidence 68899999999999999998999999999988 787766666654331 111111 2478888888654444 4
Q ss_pred HHH
Q 022834 72 SVV 74 (291)
Q Consensus 72 ~v~ 74 (291)
..+
T Consensus 263 ~~~ 265 (366)
T 2cdc_A 263 NVI 265 (366)
T ss_dssp HHG
T ss_pred HHH
Confidence 444
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.013 Score=51.69 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=66.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEE-EEcC----------CcchhHHHHHC-C-------CcccCCHHHHH-hhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR----------TLSKCDELVAH-G-------ATVGGSPAEVI-KKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~-~~~r----------~~~~~~~l~~~-g-------~~~~~~~~~~~-~~~dvv 60 (291)
++|+|.|.|++|...+..|.+.|.+|+ +.|+ +.+.+..+++. | .... +.+++. .+||++
T Consensus 236 ~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei~~~~~DIl 314 (440)
T 3aog_A 236 ARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGLPVEFL 314 (440)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHHTTCCCSEE
T ss_pred CEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-CchhhhcCCCcEE
Confidence 479999999999999999999999877 6676 45555555543 2 1222 345554 379999
Q ss_pred EEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 61 ii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+-|.....-.. +-.+.+ +-++|+.-.|.. .+ .+..+.+.++|+.|+
T Consensus 315 vPcA~~n~i~~-------~na~~l-~ak~VvEgAN~p-~t-~eA~~iL~~~GI~~~ 360 (440)
T 3aog_A 315 VPAALEKQITE-------QNAWRI-RARIVAEGANGP-TT-PAADDILLEKGVLVV 360 (440)
T ss_dssp EECSSSSCBCT-------TTGGGC-CCSEEECCSSSC-BC-HHHHHHHHHHTCEEE
T ss_pred EecCCcCccch-------hhHHHc-CCcEEEecCccc-cC-HHHHHHHHHCCCEEE
Confidence 98874322111 112233 456777766653 23 334456777787664
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.014 Score=48.48 Aligned_cols=82 Identities=11% Similarity=0.024 Sum_probs=50.8
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhccC
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDKG 78 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~~ 78 (291)
++.|.| .|.+|.+++..|++.|++|++.+|++++.+.+.+. ..+ ...++.++. +.+...+++++ +
T Consensus 34 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dl~d~~~v~~~~---~ 101 (276)
T 3r1i_A 34 RALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADE-------IAG--VGGKALPIRCDVTQPDQVRGML---D 101 (276)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH-------HHH--TTCCCEEEECCTTCHHHHHHHH---H
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh--cCCeEEEEEcCCCCHHHHHHHH---H
Confidence 344555 58999999999999999999999998877665431 000 011233222 34555666666 4
Q ss_pred ccccccCCCcEEEEcCC
Q 022834 79 GVLEQICPGKGYIDMST 95 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~ 95 (291)
++.....+=+++|++..
T Consensus 102 ~~~~~~g~iD~lvnnAg 118 (276)
T 3r1i_A 102 QMTGELGGIDIAVCNAG 118 (276)
T ss_dssp HHHHHHSCCSEEEECCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 44444434456666543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.011 Score=48.75 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=50.8
Q ss_pred EEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhccCc
Q 022834 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDKGG 79 (291)
Q Consensus 3 I~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~~~ 79 (291)
+.|.| .|.+|.+++..|++.|++|.+.+|++++.+.+.+. ..+ ...++.++. +.+...+++++ ++
T Consensus 14 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dv~~~~~v~~~~---~~ 81 (264)
T 3ucx_A 14 VVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQ-------VTD--TGRRALSVGTDITDDAQVAHLV---DE 81 (264)
T ss_dssp EEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHHHH---HH
T ss_pred EEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEEcCCCCHHHHHHHH---HH
Confidence 44555 58899999999999999999999998877655431 111 122333333 34556666666 45
Q ss_pred cccccCCCcEEEEcC
Q 022834 80 VLEQICPGKGYIDMS 94 (291)
Q Consensus 80 l~~~l~~~~~vv~~s 94 (291)
+.....+=+++|++.
T Consensus 82 ~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 82 TMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHTSCCSEEEECC
T ss_pred HHHHcCCCcEEEECC
Confidence 544444446677655
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0088 Score=51.00 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=32.6
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDE 38 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 38 (291)
|+|.|.| +|.+|..++..|++.|++|++.+|+++....
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~ 44 (341)
T 3enk_A 6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKRE 44 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTH
T ss_pred cEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHH
Confidence 5788887 5999999999999999999999997765443
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.014 Score=51.74 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=28.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT 32 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~ 32 (291)
||.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 42 ~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D 73 (434)
T 1tt5_B 42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMD 73 (434)
T ss_dssp CEEEECSSTHHHHHHHHHHHTTCCCEEEEECC
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 79999999999999999999996 69999764
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0065 Score=52.22 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=47.1
Q ss_pred CeEEEEe-cChhhHHHHHHHHhC-CC-cEEEEcCCcchhHHHHHC----CCcc----cCC---HHHHHhhCCEEEEec
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRN-GF-KVTVWNRTLSKCDELVAH----GATV----GGS---PAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~-g~-~V~~~~r~~~~~~~l~~~----g~~~----~~~---~~~~~~~~dvvii~v 64 (291)
|+|.|.| +|.+|..++..|.+. |+ +|++++|++++.+.+.+. ++.. ..+ ..++++.+|+||-+.
T Consensus 22 k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~A 99 (344)
T 2gn4_A 22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAA 99 (344)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEECC
Confidence 5788887 599999999999998 97 999999998776655431 2211 112 334566789999876
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0044 Score=52.83 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
|+|.|.|+ |.+|..++..|++.|++|++.+|+++.
T Consensus 21 ~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~ 56 (330)
T 2pzm_A 21 MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATG 56 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence 68999987 999999999999999999999996543
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.023 Score=49.91 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=66.9
Q ss_pred CeEEEEecChhhHHHHHHHHh-CCCcEE-EEcC----------CcchhHHHHHC-C-------CcccCCHHHHH-hhCCE
Q 022834 1 MEVGFLGLGIMGKAISMNLLR-NGFKVT-VWNR----------TLSKCDELVAH-G-------ATVGGSPAEVI-KKCTI 59 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~-~g~~V~-~~~r----------~~~~~~~l~~~-g-------~~~~~~~~~~~-~~~dv 59 (291)
++|+|.|.|+||...+..|.+ .|.+|+ +.|+ +++.+..+++. + .... +.+++. .+||+
T Consensus 210 ~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil~~~~DI 288 (415)
T 2tmg_A 210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVDI 288 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHTTCSCSE
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-CchhhhcCCCcE
Confidence 479999999999999999998 898877 5566 55666666553 2 1222 345554 37999
Q ss_pred EEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 60 vii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
++-|.....-..+-. ++ + +-++|+.-.|... + .+..+.+.++|+.++
T Consensus 289 liP~A~~n~i~~~~a---~~----l-~ak~V~EgAN~p~-t-~~a~~~l~~~Gi~~~ 335 (415)
T 2tmg_A 289 LVPAALEGAIHAGNA---ER----I-KAKAVVEGANGPT-T-PEADEILSRRGILVV 335 (415)
T ss_dssp EEECSSTTSBCHHHH---TT----C-CCSEEECCSSSCB-C-HHHHHHHHHTTCEEE
T ss_pred EEecCCcCccCcccH---HH----c-CCeEEEeCCCccc-C-HHHHHHHHHCCCEEE
Confidence 999874432222222 22 2 4567776665532 3 334456777787654
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.011 Score=50.94 Aligned_cols=45 Identities=22% Similarity=0.199 Sum_probs=37.6
Q ss_pred eEEEEecChhhHHH-HHHH-HhCCCc-EEEEcCCcc---hhHHHHHCCCcc
Q 022834 2 EVGFLGLGIMGKAI-SMNL-LRNGFK-VTVWNRTLS---KCDELVAHGATV 46 (291)
Q Consensus 2 kI~iIG~G~mG~~l-a~~l-~~~g~~-V~~~~r~~~---~~~~l~~~g~~~ 46 (291)
+|.|+|+|.+|... +..+ ...|.+ |+..+++++ +.+.+.+.|+..
T Consensus 175 ~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~ 225 (357)
T 2b5w_A 175 SAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATY 225 (357)
T ss_dssp EEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcc
Confidence 68999999999999 7777 667887 999999988 888887777643
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.014 Score=49.76 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=44.8
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhH------HHHH-CCCc-------ccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCD------ELVA-HGAT-------VGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~------~l~~-~g~~-------~~~~~~~~~~~~dvvii~v 64 (291)
|+|.|.| +|.+|+.++..|.+.||+|++..|+++..+ .+.. .++. -..+..++++.+|+||-+.
T Consensus 10 ~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 88 (338)
T 2rh8_A 10 KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA 88 (338)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence 5788998 699999999999999999998888765321 1211 1221 1234556777889988764
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.011 Score=50.62 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.4
Q ss_pred eEEEEecChhhHHHHHHHHhCC---CcEEEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG---FKVTVW 29 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g---~~V~~~ 29 (291)
||||+|+|++|..+.+.|.+++ ++|..+
T Consensus 4 kVgI~G~G~IGr~v~r~l~~~~~~~~evvaI 34 (339)
T 3b1j_A 4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAI 34 (339)
T ss_dssp EEEEECCSHHHHHHHHHHHHCSCCSEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 8999999999999999998763 565544
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0095 Score=50.12 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=51.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCH---HHH---HhhCCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSP---AEV---IKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~---~~~---~~~~dvvii~vp~~~~~~~v~ 74 (291)
+|.|+|+ |.+|...+..+...|.+|+..++++++.+.+.+.|....-+. .+. ++.+|++|- ++. ..+...+
T Consensus 128 ~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~~~~~~ 205 (302)
T 1iz0_A 128 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KEVEESL 205 (302)
T ss_dssp EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TTHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HHHHHHH
Confidence 6889998 999999999999999999999999999888877775432111 222 245788888 755 3444444
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.013 Score=48.40 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=32.1
Q ss_pred eEEEE-e-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iI-G-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|+.+| | .|.+|.+++..|++.|++|.+.+|++++.+.+.
T Consensus 5 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 45 (264)
T 3tfo_A 5 KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIA 45 (264)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 44444 5 589999999999999999999999988776554
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.013 Score=47.77 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=32.0
Q ss_pred EEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 3 I~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+.|.| .|.+|.+++..|++.|++|++.+|++++.+.+.
T Consensus 12 vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T 3qiv_A 12 GIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVA 50 (253)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 44555 499999999999999999999999988776654
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0042 Score=51.93 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=42.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhh--CCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--~dvvii~v 64 (291)
|||.|.|+ |.+|..++..|. .|++|++.+|+++.. ...+.-..+..+++++ +|+||-+.
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~----~~D~~d~~~~~~~~~~~~~d~vih~a 62 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEF----CGDFSNPKGVAETVRKLRPDVIVNAA 62 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSS----CCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccccc----cccCCCHHHHHHHHHhcCCCEEEECc
Confidence 89999987 999999999999 899999999976311 0011111123445555 89999876
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0084 Score=51.55 Aligned_cols=65 Identities=25% Similarity=0.205 Sum_probs=45.5
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----CCCcc----cCC---HHHHHhh--CCEEEEecC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----HGATV----GGS---PAEVIKK--CTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----~g~~~----~~~---~~~~~~~--~dvvii~vp 65 (291)
|+|.|.| +|.+|..++..|.+.|++|++.+|++++...+.+ .++.. ..+ ..++++. +|+||-+..
T Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 89 (357)
T 1rkx_A 10 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAA 89 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEECCC
Confidence 5799998 5999999999999999999999998765443322 12211 112 2344444 799988764
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.028 Score=49.36 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=67.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEE-EEcC----------CcchhHHHHHCCCccc---CCHHHHH-hhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR----------TLSKCDELVAHGATVG---GSPAEVI-KKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~-~~~r----------~~~~~~~l~~~g~~~~---~~~~~~~-~~~dvvii~vp 65 (291)
++|.|.|.|++|...+..|.+.|.+|+ +.|+ +.+.+..+++..-.+. -+.+++. -+||+.+-|..
T Consensus 219 k~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DVliP~A~ 298 (419)
T 3aoe_E 219 ARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEVLVLAAR 298 (419)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceEEEeccc
Confidence 478999999999999999999999987 7787 6666666665411111 1223332 37999998874
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
...-..+.. +. + +=++|+.-.|... + .+..+.+.++|+.|+
T Consensus 299 ~n~i~~~~A---~~----l-~ak~V~EgAN~p~-t-~~A~~~L~~~Gi~~~ 339 (419)
T 3aoe_E 299 EGALDGDRA---RQ----V-QAQAVVEVANFGL-N-PEAEAYLLGKGALVV 339 (419)
T ss_dssp TTCBCHHHH---TT----C-CCSEEEECSTTCB-C-HHHHHHHHHHTCEEE
T ss_pred ccccccchH---hh----C-CceEEEECCCCcC-C-HHHHHHHHHCCCEEE
Confidence 322222222 22 2 3367887776642 3 344566778887665
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.011 Score=54.25 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=29.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 329 kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~ 361 (598)
T 3vh1_A 329 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 361 (598)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEECCSB
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 79999999999999999999996 699998763
|
| >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.028 Score=48.19 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=66.4
Q ss_pred eEEEEe-cChhhHHHHHHHHhC-CCcEEE--EcCCcchhHHHHH-CCCccc-----CCH--------------HHHH--h
Q 022834 2 EVGFLG-LGIMGKAISMNLLRN-GFKVTV--WNRTLSKCDELVA-HGATVG-----GSP--------------AEVI--K 55 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~-g~~V~~--~~r~~~~~~~l~~-~g~~~~-----~~~--------------~~~~--~ 55 (291)
||+|+| +|.+|..-...+.++ +++|.. .++|.+.+..... .+...+ .+. .+++ .
T Consensus 5 ~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~el~~~~ 84 (376)
T 3a06_A 5 TLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEEMLEAL 84 (376)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHHHHHHH
T ss_pred eEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHHHhcCC
Confidence 799999 699999998888886 467664 3688777765543 233322 121 3554 3
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEE
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFL 116 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~ 116 (291)
++|+|+.+++...+++..+ . .++.|+.|.....-. ...-..+.+...+.+..++
T Consensus 85 ~~D~Vv~AivG~aGL~ptl---a----Ai~aGK~vaLANKEsLV~aG~li~~~a~~~g~~ll 139 (376)
T 3a06_A 85 KPDITMVAVSGFSGLRAVL---A----SLEHSKRVCLANKESLVCGGFLVKKKLKEKGTELI 139 (376)
T ss_dssp CCSEEEECCCSTTHHHHHH---H----HHHHCSEEEECCSHHHHHHHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEEeeCHHHHHHHH---H----HHHCCCEEEEeChHHHHhhHHHHHHHHHHcCCEEE
Confidence 5899999999988888877 2 233556655432211 1111223333444566654
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.011 Score=50.30 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=32.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchh
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC 36 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~ 36 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|+++..
T Consensus 4 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~ 40 (345)
T 2z1m_A 4 KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEF 40 (345)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccc
Confidence 57999987 9999999999999999999999987653
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0072 Score=53.03 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=31.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
++|.|||+|..|..+|..|++.|++|+++++.+.
T Consensus 24 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~ 57 (407)
T 3rp8_A 24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE 57 (407)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 4799999999999999999999999999998764
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.025 Score=48.27 Aligned_cols=72 Identities=18% Similarity=0.125 Sum_probs=50.6
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH-HHCCCccc-----CCHHHHHh-----hCCEEEEecCCHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-VAHGATVG-----GSPAEVIK-----KCTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-~~~g~~~~-----~~~~~~~~-----~~dvvii~vp~~~~ 69 (291)
+|.|+|+ |.+|...+..+...|.+|++.++++++.+.+ .+.|.... .+..+.+. ..|++|-|+. ...
T Consensus 152 ~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g-~~~ 230 (336)
T 4b7c_A 152 TVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG-GEI 230 (336)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC-HHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC-cch
Confidence 6889998 9999999999999999999999999998888 56565321 12222221 3677777774 333
Q ss_pred HHHHH
Q 022834 70 ALSVV 74 (291)
Q Consensus 70 ~~~v~ 74 (291)
+...+
T Consensus 231 ~~~~~ 235 (336)
T 4b7c_A 231 LDTVL 235 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.057 Score=46.58 Aligned_cols=41 Identities=12% Similarity=0.014 Sum_probs=35.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCCc-EEEEcCCcchhHHHHHC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAH 42 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~ 42 (291)
+|.|+|+|.+|...+......|.+ |++.++++++.+.+++.
T Consensus 182 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l 223 (363)
T 3m6i_A 182 PVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI 223 (363)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence 688999999999999988889987 88899999888776654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=95.88 E-value=0.025 Score=46.08 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=50.7
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+.+| |.|.+|.+++..|++.|++|.+.+|+++..+.+.+. .-.....+-+=+.+...++.++ ++
T Consensus 10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~d~~~v~~~~---~~ 76 (248)
T 3op4_A 10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDY----------LGDNGKGMALNVTNPESIEAVL---KA 76 (248)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hcccceEEEEeCCCHHHHHHHH---HH
Confidence 44555 558999999999999999999999998777655431 1111122222234556666666 44
Q ss_pred cccccCCCcEEEEcCC
Q 022834 80 VLEQICPGKGYIDMST 95 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~ 95 (291)
+.....+=+++|++..
T Consensus 77 ~~~~~g~iD~lv~nAg 92 (248)
T 3op4_A 77 ITDEFGGVDILVNNAG 92 (248)
T ss_dssp HHHHHCCCSEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 4444434456676544
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0052 Score=53.13 Aligned_cols=73 Identities=23% Similarity=0.181 Sum_probs=51.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH-HCCCccc---CCHHHH---HhhCCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVG---GSPAEV---IKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-~~g~~~~---~~~~~~---~~~~dvvii~vp~~~~~~~v~ 74 (291)
+|.|+|+|.+|...+..+...|.+|++.++++++.+.+. +.|.... .+.+.+ ....|++|-|++.+..+...+
T Consensus 183 ~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~ 262 (357)
T 2cf5_A 183 RGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALEPYL 262 (357)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCCSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHHHHHHH
Confidence 688999999999999988888999999999988888777 5565321 222221 124788888886533344444
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.008 Score=50.50 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=43.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHHHCCCcc----cC---CHHHHHh--hCCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATV----GG---SPAEVIK--KCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~g~~~----~~---~~~~~~~--~~dvvii~v 64 (291)
|+|.|.|+ |.+|..++..|.+. |++|++.+|++...+ +.+ ++.. .. +..++++ .+|+||-+.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~~~-~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a 76 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-VVN-SGPFEVVNALDFNQIEHLVEVHKITDIYLMA 76 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-HHH-SSCEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-ccC-CCceEEecCCCHHHHHHHHhhcCCCEEEECC
Confidence 58999987 99999999999998 899999999876533 222 2211 11 2234455 678887775
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.011 Score=50.63 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=30.8
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|+|.|.|+ |.+|..++..|.+.|++|++.+|++.
T Consensus 28 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 62 (352)
T 1sb8_A 28 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFAT 62 (352)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 57999987 99999999999999999999998753
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.019 Score=46.53 Aligned_cols=81 Identities=10% Similarity=0.017 Sum_probs=50.5
Q ss_pred EEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhccCc
Q 022834 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDKGG 79 (291)
Q Consensus 3 I~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~~~ 79 (291)
+.|.| .|.+|.+++..|++.|++|++.+|++++.+.+.+. ..+ ...++.++. +.+...+++++ ++
T Consensus 8 vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~~~~~---~~ 75 (247)
T 3lyl_A 8 ALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENS-------MKE--KGFKARGLVLNISDIESIQNFF---AE 75 (247)
T ss_dssp EEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHHHH---HH
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh--cCCceEEEEecCCCHHHHHHHH---HH
Confidence 44554 59999999999999999999999998776654321 000 012333333 34555666666 44
Q ss_pred cccccCCCcEEEEcCC
Q 022834 80 VLEQICPGKGYIDMST 95 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~ 95 (291)
+.....+=+++|++..
T Consensus 76 ~~~~~~~id~li~~Ag 91 (247)
T 3lyl_A 76 IKAENLAIDILVNNAG 91 (247)
T ss_dssp HHHTTCCCSEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 4444434466676554
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.014 Score=47.92 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=31.9
Q ss_pred EEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 3 I~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+.|.| .|.+|.+++..|++.|++|.+.+|+.++.+.+.
T Consensus 32 vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 70 (262)
T 3rkr_A 32 AVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVE 70 (262)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 44555 599999999999999999999999988776543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.012 Score=48.84 Aligned_cols=81 Identities=14% Similarity=0.102 Sum_probs=49.5
Q ss_pred EEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhccCc
Q 022834 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDKGG 79 (291)
Q Consensus 3 I~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~~~ 79 (291)
+.|.| .|.+|.+++..|++.|++|++.+|++++.+.+.+. ..+ ...++.++. +.+...++.++ ++
T Consensus 27 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dv~d~~~v~~~~---~~ 94 (279)
T 3sju_A 27 AFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDG-------LRA--AGHDVDGSSCDVTSTDEVHAAV---AA 94 (279)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHT--TTCCEEEEECCTTCHHHHHHHH---HH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEECCCCCHHHHHHHH---HH
Confidence 44445 58999999999999999999999998877654321 000 012333332 33555566665 44
Q ss_pred cccccCCCcEEEEcCC
Q 022834 80 VLEQICPGKGYIDMST 95 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~ 95 (291)
+.....+=+++|+...
T Consensus 95 ~~~~~g~id~lv~nAg 110 (279)
T 3sju_A 95 AVERFGPIGILVNSAG 110 (279)
T ss_dssp HHHHHCSCCEEEECCC
T ss_pred HHHHcCCCcEEEECCC
Confidence 4443334456666543
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.022 Score=48.48 Aligned_cols=64 Identities=28% Similarity=0.355 Sum_probs=43.8
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhH---HHHHC-----C-------CcccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCD---ELVAH-----G-------ATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~---~l~~~-----g-------~~~~~~~~~~~~~~dvvii~v 64 (291)
++|.|.| +|.+|+.++..|.+.||+|++..|+++..+ .+.+. + +.-..+..++++.+|+||-+.
T Consensus 6 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A 85 (337)
T 2c29_D 6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVA 85 (337)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEECC
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEEec
Confidence 3677887 799999999999999999998888776432 22111 1 111234456677788877654
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0056 Score=52.34 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=23.7
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVW 29 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~~~ 29 (291)
+||||+|+|++|..+.+.|.++ ..+|...
T Consensus 2 ikVgI~G~G~iGr~l~R~l~~~~~veivai 31 (334)
T 3cmc_O 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAV 31 (334)
T ss_dssp EEEEEESCSHHHHHHHHHHTTCTTEEEEEE
T ss_pred eEEEEECCCHHHHHHHHHHhCCCCeEEEEE
Confidence 4899999999999999999876 3465544
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0081 Score=52.99 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=31.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|+|.|||+|..|.+.|..|+++|++|+++++++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~ 33 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA 33 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 899999999999999999999999999999864
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.018 Score=49.68 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=65.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
+|.|||+|.+|+.++..|+.+|. +++++|++.-....+..+ |...+....+.+. +.++-+.+.+....-
T Consensus 120 ~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 199 (353)
T 3h5n_A 120 KVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNIND 199 (353)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECCCCS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecccCc
Confidence 79999999999999999999996 699999875433333322 1111111122111 345555544221100
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (291)
+. .+.. +..-++||+++.....+...+.+...+.+..++.+.+.
T Consensus 200 ~~------~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~ 243 (353)
T 3h5n_A 200 YT------DLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYV 243 (353)
T ss_dssp GG------GGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred hh------hhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 00 1222 44557888876544325555666677778888866543
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.016 Score=49.67 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=34.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~ 41 (291)
+|.|+|+|.+|...+..+...|. +|+..++++++.+.+.+
T Consensus 167 ~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~ 207 (343)
T 2dq4_A 167 SVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP 207 (343)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 68999999999999999888998 89999999887665443
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.02 Score=47.44 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=32.9
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
|+.+| |.|.+|.+++..|++.|++|++.+|+.++.+.+.+
T Consensus 6 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVA 47 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 44444 45999999999999999999999999887776543
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0066 Score=55.38 Aligned_cols=40 Identities=35% Similarity=0.438 Sum_probs=35.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
++.|+|+|.+|.+++..|++.|.+|++++|+.++++.+.+
T Consensus 366 ~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~a~~la~ 405 (523)
T 2o7s_A 366 TVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAE 405 (523)
T ss_dssp CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5778999999999999999999999999999988887764
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.02 Score=49.14 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=38.3
Q ss_pred eEEEE-ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc
Q 022834 2 EVGFL-GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT 45 (291)
Q Consensus 2 kI~iI-G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~ 45 (291)
+|.|+ |+|.+|...+..+...|.+|++.++++++.+.+.+.|..
T Consensus 153 ~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 197 (346)
T 3fbg_A 153 TLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGAD 197 (346)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCS
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc
Confidence 58889 799999999999999999999999999988887776643
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0073 Score=52.34 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=30.0
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|.|||+|..|...|..|+++|++|+++++.++
T Consensus 7 ViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~ 38 (397)
T 3oz2_A 7 VLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE 38 (397)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 89999999999999999999999999998653
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.021 Score=45.84 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=32.1
Q ss_pred EEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 3 I~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|.|.| .|.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 8 vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 46 (234)
T 2ehd_A 8 VLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALA 46 (234)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 56664 599999999999999999999999987766554
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0048 Score=51.29 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=41.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~v 64 (291)
|||.|.|+ |.+|..++..|.++|++|++.+|..-. +.-..+..++++ .+|+||-+.
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D--------~~d~~~~~~~~~~~~~d~vi~~a 64 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLD--------ITNISQVQQVVQEIRPHIIIHCA 64 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSC--------TTCHHHHHHHHHHHCCSEEEECC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccC--------CCCHHHHHHHHHhcCCCEEEECC
Confidence 57999985 999999999999999999999984311 111123344555 489988775
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.019 Score=47.03 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=50.5
Q ss_pred eEEEE-ecC---hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHh
Q 022834 2 EVGFL-GLG---IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVF 75 (291)
Q Consensus 2 kI~iI-G~G---~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~ 75 (291)
|+++| |++ .+|.++++.|++.|++|.+.+|+++..+.+.+. .++ ....++.++. +.++.+++..+
T Consensus 7 K~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~-------~~~-~~~~~~~~~~~Dv~~~~~v~~~~- 77 (256)
T 4fs3_A 7 KTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKL-------LEQ-LNQPEAHLYQIDVQSDEEVINGF- 77 (256)
T ss_dssp CEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH-------HGG-GTCSSCEEEECCTTCHHHHHHHH-
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh-cCCCcEEEEEccCCCHHHHHHHH-
Confidence 45555 864 699999999999999999999998776655431 000 1112233322 34566666666
Q ss_pred ccCccccccCCCcEEEEcC
Q 022834 76 DKGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s 94 (291)
+++...+.+=+++|+..
T Consensus 78 --~~~~~~~G~iD~lvnnA 94 (256)
T 4fs3_A 78 --EQIGKDVGNIDGVYHSI 94 (256)
T ss_dssp --HHHHHHHCCCSEEEECC
T ss_pred --HHHHHHhCCCCEEEecc
Confidence 45544444445666543
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.011 Score=48.51 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=50.2
Q ss_pred EEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhccCc
Q 022834 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDKGG 79 (291)
Q Consensus 3 I~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~~~ 79 (291)
+.|.| .|.+|.+++..|++.|++|++.+|++++.+.+.+.-.. ...++.++. +.+...++.++ ++
T Consensus 9 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~~~~Dv~~~~~v~~~~---~~ 76 (257)
T 3imf_A 9 VIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ---------FPGQILTVQMDVRNTDDIQKMI---EQ 76 (257)
T ss_dssp EEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---------STTCEEEEECCTTCHHHHHHHH---HH
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---------cCCcEEEEEccCCCHHHHHHHH---HH
Confidence 33444 58999999999999999999999998877665432000 011333322 34555666666 44
Q ss_pred cccccCCCcEEEEcCC
Q 022834 80 VLEQICPGKGYIDMST 95 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~ 95 (291)
+.....+=+++|++..
T Consensus 77 ~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 77 IDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 4444434456666543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.012 Score=48.50 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=51.6
Q ss_pred eEEEEec-C-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFLGL-G-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~-G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
++.|.|+ | .+|.+++..|++.|++|++.+|+.++.+.+.+. ..+ ....++.++. +.+...++.++
T Consensus 24 ~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~-~~~~~~~~~~~Dl~~~~~v~~~~--- 92 (266)
T 3o38_A 24 VVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQ-------LAD-LGLGRVEAVVCDVTSTEAVDALI--- 92 (266)
T ss_dssp EEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHT-TCSSCEEEEECCTTCHHHHHHHH---
T ss_pred EEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-------HHh-cCCCceEEEEeCCCCHHHHHHHH---
Confidence 4667788 8 599999999999999999999998776654321 000 0012333333 34555666666
Q ss_pred CccccccCCCcEEEEcCC
Q 022834 78 GGVLEQICPGKGYIDMST 95 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~ 95 (291)
+++.....+=+++|++..
T Consensus 93 ~~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 93 TQTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCCcEEEECCC
Confidence 444444434456666544
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.013 Score=48.01 Aligned_cols=82 Identities=15% Similarity=0.117 Sum_probs=50.2
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+.+| |.|.+|.+++..|++.|++|.+.+|+.++.+.+.+. ..+ ...++.++. +.+...++.++
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dv~d~~~v~~~~--- 80 (256)
T 3gaf_A 13 AVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAA-------IRQ--AGGKAIGLECNVTDEQHREAVI--- 80 (256)
T ss_dssp CEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEECCCCCHHHHHHHH---
Confidence 34444 569999999999999999999999998776654321 000 012333332 33555666666
Q ss_pred CccccccCCCcEEEEcCC
Q 022834 78 GGVLEQICPGKGYIDMST 95 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~ 95 (291)
+++.....+=+++|++..
T Consensus 81 ~~~~~~~g~id~lv~nAg 98 (256)
T 3gaf_A 81 KAALDQFGKITVLVNNAG 98 (256)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 444443434456666543
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.025 Score=46.30 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=33.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
++.|.|+ |.+|.+++..|++.|++|++.+|++++.+.+.+
T Consensus 11 ~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (261)
T 3n74_A 11 VALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAG 51 (261)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 3556655 889999999999999999999999888776553
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.019 Score=46.94 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=31.5
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
+|.|.| .|.+|..++..|++.|++|++.+|++++.+.+
T Consensus 15 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~ 53 (260)
T 3awd_A 15 VAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKA 53 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 356665 59999999999999999999999987765543
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.015 Score=49.95 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=51.0
Q ss_pred eEEEEecChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHCCCccc----CCHHHHH----h--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVG----GSPAEVI----K--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~~----~--~~dvvii~vp~~~~~ 70 (291)
+|.|+|+|.+|...+..+... |.+|+..++++++.+.+++.|+... ++..+.+ . ..|++|-|++.+..+
T Consensus 174 ~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~~~~ 253 (345)
T 3jv7_A 174 TAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQSTI 253 (345)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCHHHH
Confidence 588999999999988877766 7899999999999988888775421 1121211 1 467777777665444
Q ss_pred HHHH
Q 022834 71 LSVV 74 (291)
Q Consensus 71 ~~v~ 74 (291)
...+
T Consensus 254 ~~~~ 257 (345)
T 3jv7_A 254 DTAQ 257 (345)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.033 Score=45.66 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=32.9
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
++.|.| .|.+|.+++..|++.|++|++.+|++++.+.+.+
T Consensus 14 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 54 (263)
T 3ak4_A 14 KAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVA 54 (263)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 455565 5899999999999999999999999877665543
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.018 Score=47.00 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=32.1
Q ss_pred EEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 3 I~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+.|.| .|.+|.+++..|++.|++|.+.+|++++.+.+.
T Consensus 10 vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (252)
T 3h7a_A 10 VAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLV 48 (252)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHH
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 44555 589999999999999999999999988877654
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.026 Score=46.96 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=50.9
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+.+| |.|.+|.+++..|++.|++|.+.+|++++.+.+.+. ..+.- ...+.++. +.+...+++++
T Consensus 34 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~~~-~~~~~~~~~Dv~d~~~v~~~~--- 102 (281)
T 4dry_A 34 RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGE-------IGGRT-GNIVRAVVCDVGDPDQVAALF--- 102 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHH-SSCEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcC-CCeEEEEEcCCCCHHHHHHHH---
Confidence 44555 468999999999999999999999998877655431 11111 11112222 34556666666
Q ss_pred CccccccCCCcEEEEcCC
Q 022834 78 GGVLEQICPGKGYIDMST 95 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~ 95 (291)
+++.....+=+++|++..
T Consensus 103 ~~~~~~~g~iD~lvnnAG 120 (281)
T 4dry_A 103 AAVRAEFARLDLLVNNAG 120 (281)
T ss_dssp HHHHHHHSCCSEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 445444434466776554
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.031 Score=45.60 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=33.2
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
++.|.|+ |.+|.+++..|++.|++|++.+|++++.+.+.+
T Consensus 7 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (254)
T 1hdc_A 7 TVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR 47 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4566665 999999999999999999999999877665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 291 | ||||
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 2e-35 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 3e-29 | |
| d1vpda1 | 133 | a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge | 2e-26 | |
| d2cvza1 | 132 | a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge | 1e-25 | |
| d3cuma1 | 134 | a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge | 3e-25 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 1e-21 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 2e-21 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 2e-21 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 2e-20 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 7e-14 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 6e-08 | |
| d2pv7a2 | 152 | c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA { | 1e-07 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 3e-07 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 8e-06 | |
| d1txga2 | 180 | c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen | 2e-05 | |
| d1e5qa1 | 182 | c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase | 2e-05 | |
| d2ahra2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 2e-05 | |
| d1ks9a2 | 167 | c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc | 2e-04 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 2e-04 | |
| d1yqga2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 4e-04 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 122 bits (308), Expect = 2e-35
Identities = 54/161 (33%), Positives = 88/161 (54%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M+VGF+GLGIMGK +S NLL+ G+ + V +R +++A GA + + ++C +
Sbjct: 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVI 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML + V + G++E PG IDMS++ S +IS A+ +KG L+APV
Sbjct: 61 ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG 161
SG + A G L ++ G+KA++D+ + + G
Sbjct: 121 SGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTG 161
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 107 bits (267), Expect = 3e-29
Identities = 48/159 (30%), Positives = 77/159 (48%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
+ F+GLG MG ++ NLL+ G+ + V++ S D LVA GA+ S + ++ + I
Sbjct: 4 IAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVIS 63
Query: 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
ML + D G+L I PG ++ ST+ ++ KI A +G L+APVSG
Sbjct: 64 MLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSG 123
Query: 123 SKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG 161
A G L + G+ ++A +G+ F G
Sbjct: 124 GTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG 162
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 98.6 bits (245), Expect = 2e-26
Identities = 34/126 (26%), Positives = 59/126 (46%)
Query: 162 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPT 221
++G G KL +I+ + SE L LA K+G++P + + G + + K P
Sbjct: 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPM 60
Query: 222 MLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVF 281
++ N+ P F + KD+ AL +P+ AA E + R+ G G++D SA+
Sbjct: 61 VMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALA 120
Query: 282 EVVKDL 287
+ L
Sbjct: 121 CYYEKL 126
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 96.7 bits (240), Expect = 1e-25
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 1/126 (0%)
Query: 163 VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTM 222
VG G +K + N ++ + EGL+ K G+ L+V++ + + P
Sbjct: 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQR 60
Query: 223 -LQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVF 281
L + F L KD+ +A+ + D P+ A E ++ A+ D D
Sbjct: 61 VLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEAL 120
Query: 282 EVVKDL 287
+++
Sbjct: 121 RLLERW 126
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 95.6 bits (237), Expect = 3e-25
Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
Query: 163 VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMF 215
G G K+ N ++ +M +E + L +GL+ + L +++ + NP
Sbjct: 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWP 61
Query: 216 KGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDN 275
+Y+ F + KD+ LA +A S P+ + A ++ G +
Sbjct: 62 GVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAER 121
Query: 276 DFSAVFEV 283
DFS V ++
Sbjct: 122 DFSVVQKL 129
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 86.4 bits (213), Expect = 1e-21
Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 12/162 (7%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+ VGF+G G + + ++ L G +V S A V + E + C +
Sbjct: 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVV 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I + A + V D++ + ET S I G A +
Sbjct: 61 ISAVTPGVALGAARRAGRHVRGIYV------DINNISPETVRMASSLIEKGGFVD--AAI 112
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE 162
GS + +I S + E LN G G
Sbjct: 113 MGSVRRKGADIRIIASGRDA----EEFMKLNRYGLNIEVRGR 150
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 86.5 bits (213), Expect = 2e-21
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 6/159 (3%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
V F+GLG MG ++ +L R + VWNRT K + V + I
Sbjct: 3 VAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTC 61
Query: 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
+ V + + G ++D ++ + E S +++ + KG +L+APVSG
Sbjct: 62 LPTTR----EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSG 117
Query: 123 SKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG 161
AE G L ++ G + + L KK +G
Sbjct: 118 GTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVG 155
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 87.0 bits (214), Expect = 2e-21
Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 13/178 (7%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M+VG +GLG+MG +++N+ GFKV V+NRT SK +E + A+ + +
Sbjct: 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEA 61
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPG--------KGYIDMSTVDHETSIKISRAITSKG 112
++ G + +D + + ++ + + G
Sbjct: 62 FAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAG 121
Query: 113 GHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF----FLGEVGNG 166
FL +SG ++ A G G ++++E + KA + G+G
Sbjct: 122 LRFLGMGISGGEEGARKGPAFFPG-GTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 83.9 bits (206), Expect = 2e-20
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 6/162 (3%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG-----SPAEVIK 55
++ +GL +MG+ + +N+ +GF V +NRT+SK D+ +A+ A S E++
Sbjct: 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVS 62
Query: 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115
K ++ A +V ++ + G ID ++ +++ R + KG F
Sbjct: 63 KLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILF 122
Query: 116 LEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKA 157
+ + VSG + A G ++ G K + + I K
Sbjct: 123 VGSGVSGGEDGARYGPSLMPG-GNKEAWPHIKAIFQGIAAKV 163
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 65.8 bits (159), Expect = 7e-14
Identities = 20/160 (12%), Positives = 43/160 (26%), Gaps = 10/160 (6%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
+ F+G G + + L + +R++ + L + + + +
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61
Query: 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
++ D + K + S K S + H + S
Sbjct: 62 IVPDR-------YIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASI---HPNFSFSSL 111
Query: 123 SKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE 162
K Q+V G++ I K F +
Sbjct: 112 EKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS 151
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 50.1 bits (118), Expect = 6e-08
Identities = 31/200 (15%), Positives = 63/200 (31%), Gaps = 19/200 (9%)
Query: 1 MEVGFL-GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEV------ 53
M V L G G +GK +++ L G ++ V +R K + A + G +
Sbjct: 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNED 60
Query: 54 ------IKKCTITIGMLADPAAALSVVFDKGGVLEQICP------GKGYIDMSTVDHETS 101
I TI D A L + + V+ + P G Y + +
Sbjct: 61 AAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVA 120
Query: 102 IKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG 161
+ H + A + + + +++ + G + G
Sbjct: 121 EVLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAG 180
Query: 162 EVGNGAKMKLVVNMIMGCMM 181
+ N ++ + +I+ M
Sbjct: 181 PLSNSRLVESLTPLILNIMR 200
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Score = 47.9 bits (113), Expect = 1e-07
Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 25/158 (15%)
Query: 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
+ +G G +G + L +G+ +++ +R E + A V +
Sbjct: 12 IVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIE 71
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHFLEAP 119
+ + D+++V E K+ T G H +
Sbjct: 72 RL-----------------KPYLTENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMFGA 114
Query: 120 VSGSKQPAETGQLVILSAG-EKALYDEAISALNVIGKK 156
+ Q+V+ G Y+ + + + G K
Sbjct: 115 DIA----SMAKQVVVRCDGRFPERYEWLLEQIQIWGAK 148
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 48.0 bits (114), Expect = 3e-07
Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 4/116 (3%)
Query: 43 GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSI 102
G V E ++ I I L ++ + I G T+
Sbjct: 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFA 184
Query: 103 KISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF 158
KI + + + + + G + + + ++ + KAF
Sbjct: 185 KIFKDLGREDLNIT-SYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGKAF 239
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 43.2 bits (100), Expect = 8e-06
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42
M++G +GLG++G +++ +L R G + +R S C++ V
Sbjct: 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER 42
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC 36
M V LG G MG A+S+ L+ NG +V +W
Sbjct: 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTE 36
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 2/101 (1%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--HGATVGGSPAEVIKKCTIT 60
V LG G + + L +G KVTV RTL +L A +T
Sbjct: 5 VLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAE 64
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETS 101
+ + + F + I K + S V
Sbjct: 65 VAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMM 105
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Score = 41.6 bits (96), Expect = 2e-05
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE 38
M++G +G+G M AI L + ++ + +L + E
Sbjct: 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKE 38
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR 31
M++ LG G +G+ L + G +V W R
Sbjct: 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLR 31
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 15/68 (22%), Positives = 21/68 (30%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
LGLG G A + L G V W+ + E+ GA + P +
Sbjct: 4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT 63
Query: 63 MLADPAAA 70
A
Sbjct: 64 SDIGLAVK 71
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 38.0 bits (87), Expect = 4e-04
Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 10/156 (6%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTI 59
M V FLG G M A++ L++ G +++ + NR K + L + + +
Sbjct: 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDV 60
Query: 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119
I + D + I + + +SR + P
Sbjct: 61 LILAVKP--------QDMEAACKNIRTNGALVLSVAAGL-SVGTLSRYLGGTRRIVRVMP 111
Query: 120 VSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK 155
+ K + + + A + +G
Sbjct: 112 NTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGL 147
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 291 | |||
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 100.0 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.97 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.95 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.93 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.93 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.9 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.89 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.88 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.85 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.84 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.84 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.81 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.8 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.79 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.77 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.72 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.66 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.66 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.6 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.59 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.59 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.53 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.49 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.43 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 99.08 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.07 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.04 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 99.02 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.01 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.94 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.93 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.91 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.88 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.86 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.86 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.85 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.83 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.83 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.79 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.79 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.75 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.75 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 98.73 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.67 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.66 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.65 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.61 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.56 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.56 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.55 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.53 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.52 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 98.5 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 98.46 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.44 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.42 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.42 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.41 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.41 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.39 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.39 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 98.35 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.35 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.32 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.31 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.3 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.19 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 98.18 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 98.14 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 98.12 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.1 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 98.1 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.05 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 98.05 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.05 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 98.02 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.99 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.99 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.98 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.96 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.96 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.95 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.91 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.91 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.88 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.87 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.87 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.85 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.84 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.83 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.81 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.79 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.77 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.76 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.75 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.75 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.71 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.65 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.65 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.63 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.62 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.62 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.61 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 97.59 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.58 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.58 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.58 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.49 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.43 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 97.42 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.41 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.39 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 97.38 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.33 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.32 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.28 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.27 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.22 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.21 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 97.19 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 97.19 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 97.19 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.19 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.17 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.13 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 97.12 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.06 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.06 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 97.03 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 97.02 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.98 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.95 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.95 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.94 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.94 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.92 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.9 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.86 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.83 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.81 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 96.78 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.76 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 96.76 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.75 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 96.73 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 96.72 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.71 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 96.69 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.69 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 96.67 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.67 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.66 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 96.66 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.66 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 96.65 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 96.64 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 96.62 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.62 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 96.61 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 96.61 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 96.61 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 96.59 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.58 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 96.57 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 96.57 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.55 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 96.55 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.53 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 96.51 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 96.5 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.47 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.46 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 96.43 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.42 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.4 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 96.4 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 96.4 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 96.38 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.35 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 96.34 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 96.33 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.32 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.31 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 96.3 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 96.3 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 96.29 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 96.29 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.28 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 96.26 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 96.26 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 96.25 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.23 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 96.21 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 96.2 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 96.2 | |
| d1i36a1 | 112 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.2 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 96.17 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 96.14 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 96.11 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 96.11 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 96.1 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 96.09 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.09 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 96.04 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 96.0 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 96.0 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 95.98 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 95.96 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.95 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 95.94 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 95.94 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 95.91 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.91 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.87 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 95.83 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 95.83 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.79 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 95.78 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.76 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 95.75 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 95.72 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.69 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 95.68 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 95.66 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.64 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 95.63 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 95.63 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.62 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 95.57 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 95.57 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 95.57 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 95.56 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.56 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 95.55 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 95.53 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 95.53 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 95.51 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 95.5 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 95.46 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 95.46 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.42 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.42 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 95.39 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 95.22 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 95.14 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 95.07 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 95.06 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 95.04 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 94.97 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.95 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 94.91 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.91 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 94.88 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 94.85 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 94.84 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 94.84 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 94.77 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 94.75 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 94.75 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 94.73 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 94.71 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.59 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 94.57 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 94.44 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 94.29 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.28 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 94.26 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 94.26 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 94.16 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 94.09 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 93.88 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.88 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 93.76 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 93.74 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 93.65 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 93.56 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 93.56 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 93.56 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.46 | |
| d1t0ia_ | 185 | Hypothetical protein Ylr011wp {Baker's yeast (Sacc | 93.42 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 93.4 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 93.39 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.29 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 93.19 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.19 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 93.17 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 93.14 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 93.14 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 93.13 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 93.01 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 92.87 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 92.75 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 92.69 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.59 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 92.54 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 92.51 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 92.38 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 92.37 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 92.34 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 92.3 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 92.29 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 91.96 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 91.9 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 91.83 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 91.81 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 91.74 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 91.7 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 91.62 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 91.57 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 91.54 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 91.51 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 91.5 | |
| d5nula_ | 138 | Flavodoxin {Clostridium beijerinckii [TaxId: 1520] | 91.48 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 91.37 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 91.36 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 91.23 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 91.12 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 91.03 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 90.99 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 90.93 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 90.74 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 90.72 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 90.63 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 90.59 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 90.34 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 90.32 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 90.23 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 90.14 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 90.11 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 90.1 | |
| d1g2ia_ | 166 | Intracellular protease {Archaeon Pyrococcus horiko | 90.09 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 90.07 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 89.96 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 89.94 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 89.91 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.78 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 89.74 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.66 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 89.66 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 89.65 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 89.45 | |
| d2fz5a1 | 137 | Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | 89.32 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.3 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 89.27 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 89.21 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 89.02 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 88.99 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 88.85 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 88.77 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 88.47 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 88.38 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 88.38 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 88.36 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 88.29 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 88.28 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 88.25 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 88.13 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 87.82 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 87.76 | |
| d1rtta_ | 174 | Hypothetical protein PA1204 {Pseudomonas aeruginos | 87.17 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 87.12 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 86.89 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 86.64 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 86.6 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 86.56 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 86.53 | |
| d2ftsa3 | 155 | Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId | 86.14 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 85.94 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 85.62 | |
| d1nni1_ | 171 | Azobenzene reductase {Bacillus subtilis [TaxId: 14 | 85.6 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 85.59 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 85.47 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 85.46 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 85.33 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 84.94 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 84.87 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 84.8 | |
| d1pjca2 | 193 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 84.53 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 84.31 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 83.9 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 83.89 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 83.83 | |
| d2fzva1 | 233 | Putative arsenical resistance protein {Shigella fl | 83.55 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 83.54 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 83.49 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 83.22 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 82.38 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 82.37 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.27 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 82.2 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 81.97 | |
| d1js1x2 | 161 | Transcarbamylase-like protein {Bacteroides fragili | 81.78 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 81.62 | |
| d2qwxa1 | 230 | Quinone reductase type 2 (menadione reductase) {Hu | 80.29 | |
| d1ydga_ | 201 | Trp repressor binding protein WrbA {Deinococcus ra | 80.25 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 80.25 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.5e-33 Score=218.00 Aligned_cols=161 Identities=34% Similarity=0.611 Sum_probs=154.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||||||+|.||..||.+|+++||+|++|||++++.+.+.+.+.....++.++++++|+||+|||++.+++++++..+.+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877788
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.+++++++||+||..|.+.+++.+.+.+.++.|+++|++|++..+..|+++++++|+++.+++++++|+.++.+++++
T Consensus 81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~~~~~i~~~ 160 (161)
T d1vpda2 81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT 160 (161)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred C
Q 022834 161 G 161 (291)
Q Consensus 161 ~ 161 (291)
|
T Consensus 161 G 161 (161)
T d1vpda2 161 G 161 (161)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=3.6e-31 Score=204.72 Aligned_cols=161 Identities=30% Similarity=0.544 Sum_probs=152.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+||||||+|.||.+||++|.++||+|++|||++++.+.+...+.....++.+.+..+|+|++|+|.+...+++++...++
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~ 81 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 81 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998766677
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.+.++++|||+||..|....++.+.+.+.++.|+++|++|++..+..|+++++++|+++.+++++++|+.++.+++++
T Consensus 82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~il~~~~~~v~~~ 161 (162)
T d3cuma2 82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHA 161 (162)
T ss_dssp HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHHHHHHcCccEEC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred C
Q 022834 161 G 161 (291)
Q Consensus 161 ~ 161 (291)
|
T Consensus 162 G 162 (162)
T d3cuma2 162 G 162 (162)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.95 E-value=8.2e-28 Score=188.25 Aligned_cols=153 Identities=24% Similarity=0.354 Sum_probs=138.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc--------ccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT--------VGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~--------~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
+|||||+|.||..|+++|.++||+|++|||++++.+.+.+.+.. ...++.+.+.++|++++++|.+..+.++
T Consensus 4 nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~v 83 (176)
T d2pgda2 4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNF 83 (176)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHHH
T ss_pred cEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHHH
Confidence 79999999999999999999999999999999999999877532 2234445566789999999999999999
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHh
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVI 153 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~ 153 (291)
. +++.+.+++++++||+||..|....++.+.+.+.++.|+++|++|++..+..|. +++++|+++.+++++++|+.+
T Consensus 84 ~---~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG~~~~~~~~~~il~~~ 159 (176)
T d2pgda2 84 I---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGI 159 (176)
T ss_dssp H---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHHH
T ss_pred H---HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCCCHHHHHHHHHHHHHH
Confidence 8 788888999999999999999999999999999999999999999999999998 788999999999999999999
Q ss_pred ccceE
Q 022834 154 GKKAF 158 (291)
Q Consensus 154 g~~~~ 158 (291)
+.++.
T Consensus 160 ~~kv~ 164 (176)
T d2pgda2 160 AAKVG 164 (176)
T ss_dssp SCBCT
T ss_pred hcccC
Confidence 98764
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=1.6e-26 Score=177.25 Aligned_cols=155 Identities=25% Similarity=0.402 Sum_probs=138.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
||||||+|.||..|+++|.++||.+ +|+|++++...+.+.+....... +.+.++|++++++|.+..+..+. .++.
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~v~~~~---~~l~ 76 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPL-ERVAEARVIFTCLPTTREVYEVA---EALY 76 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCG-GGGGGCSEEEECCSSHHHHHHHH---HHHT
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCccccc-ccccceeEEEecccchhhhhhhh---cccc
Confidence 8999999999999999999998865 78888888877777654544444 45568999999999998888887 7888
Q ss_pred cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEeeC
Q 022834 82 EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG 161 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~~ 161 (291)
+...++++++++||..|.+.+++.+.+.+.++.|+|+|++|++..+..|++.++++|+++.+++++++| .++.+++++|
T Consensus 77 ~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L-~~~~~v~~~G 155 (156)
T d2cvza2 77 PYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVG 155 (156)
T ss_dssp TTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEEEEE
T ss_pred ccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHH-HhcCcCEEeC
Confidence 888899999999999999999999999999999999999999999999999999999999999999999 5999999887
Q ss_pred C
Q 022834 162 E 162 (291)
Q Consensus 162 ~ 162 (291)
+
T Consensus 156 P 156 (156)
T d2cvza2 156 P 156 (156)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.93 E-value=2e-26 Score=180.75 Aligned_cols=161 Identities=25% Similarity=0.400 Sum_probs=141.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc--------cCCHHHH---HhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------GGSPAEV---IKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~--------~~~~~~~---~~~~dvvii~vp~~~~ 69 (291)
|||||||+|.||..|+++|.++||+|++|||++++.+.+.+.+... ..+.++. +..++.++++++....
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 9999999999999999999999999999999999999998765322 2333333 3467889999988888
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHH
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISA 149 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~l 149 (291)
++.++ ..+...+.++++++++|+..|.....+.+.+.+.++.|+++|++|++..+..|. +++++|+++.+++++++
T Consensus 82 ~~~~~---~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~mvgG~~~~~~~v~pi 157 (178)
T d1pgja2 82 TDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPI 157 (178)
T ss_dssp HHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHH
T ss_pred hhhhh---hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEEeeCCHHHHHHHHHH
Confidence 88888 677778889999999999999999999999999999999999999999999997 68999999999999999
Q ss_pred HHHhccceE----eeCCCCh
Q 022834 150 LNVIGKKAF----FLGEVGN 165 (291)
Q Consensus 150 l~~~g~~~~----~~~~~~~ 165 (291)
|+.++.++. +++..|.
T Consensus 158 l~~~~~~~~~~~~~~g~~G~ 177 (178)
T d1pgja2 158 VEAAAAKADDGRPCVTMNGS 177 (178)
T ss_dssp HHHHSCBCTTSCBSCCCCCS
T ss_pred HHHHhccccCCCCccCCCCC
Confidence 999998887 7777765
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.90 E-value=6.8e-24 Score=161.77 Aligned_cols=150 Identities=21% Similarity=0.285 Sum_probs=121.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||||||+|.||.+|+++|.++||+|++|++++++...+...+..+..++.|+++++|+||+|||.+. ..+++ .+.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~-~~~~~---~~~ 76 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGV-ALGAA---RRA 76 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGG-HHHHH---HHH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCch-HHHHH---Hhh
Confidence 99999999999999999999999999999998888777777777777889999999999999997754 44555 344
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.+ +++++|+|+..|...+++.+.+.+. .|+++|++|++.....+...++.|++.+.++ .|+.+|.++.++
T Consensus 77 ~~~~--~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~----~l~~~g~~i~~~ 148 (152)
T d1i36a2 77 GRHV--RGIYVDINNISPETVRMASSLIEKG--GFVDAAIMGSVRRKGADIRIIASGRDAEEFM----KLNRYGLNIEVR 148 (152)
T ss_dssp HTTC--CSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEECSCHHHHGGGCEEEEESTTHHHHH----GGGGGTCEEEEC
T ss_pred cccC--CceeeccCcCCHHHHHHHHHHHhcc--CCCcccccCCcccccCCcEEEEECCCHHHHH----HHHHcCCeeeEc
Confidence 4443 6789999999999999999877544 4899999999888777766544444544443 367889888887
Q ss_pred CC
Q 022834 161 GE 162 (291)
Q Consensus 161 ~~ 162 (291)
|+
T Consensus 149 G~ 150 (152)
T d1i36a2 149 GR 150 (152)
T ss_dssp SS
T ss_pred CC
Confidence 75
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.89 E-value=8.3e-23 Score=157.93 Aligned_cols=152 Identities=20% Similarity=0.327 Sum_probs=118.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc-ccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+|.||++||+.|.++||+|++|||++++.+.+.+.|.. ...+..+.++++|+||+|+|. ..+++++ ++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl---~~ 76 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTL---EK 76 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHH---HH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhh---hh
Confidence 999999999999999999999999999999999999988887743 334455678899999999965 6799999 88
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCC----ChHhhc----ccceEEEe---cCCHHHHHHHH
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSG----SKQPAE----TGQLVILS---AGEKALYDEAI 147 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~----~g~~~~~~---~g~~~~~~~~~ 147 (291)
+.+.++++++|+++++........+.+... .++ .+|+.+ ++..+. .+...+++ +++++.++.++
T Consensus 77 l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~----~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~ 152 (165)
T d2f1ka2 77 LIPHLSPTAIVTDVASVKTAIAEPASQLWS----GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLR 152 (165)
T ss_dssp HGGGSCTTCEEEECCSCCHHHHHHHHHHST----TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHH
T ss_pred hhhhcccccceeeccccchHHHHHHHHhhc----ccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHH
Confidence 999999999999999888776666554332 232 444443 333322 24444444 56899999999
Q ss_pred HHHHHhccceEee
Q 022834 148 SALNVIGKKAFFL 160 (291)
Q Consensus 148 ~ll~~~g~~~~~~ 160 (291)
++|+.+|.+++++
T Consensus 153 ~l~~~lG~~v~~c 165 (165)
T d2f1ka2 153 SVLEPLGVKIYLC 165 (165)
T ss_dssp HHHGGGTCEEEEC
T ss_pred HHHHHhCCEEEeC
Confidence 9999999998764
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.88 E-value=3.1e-22 Score=148.55 Aligned_cols=126 Identities=27% Similarity=0.460 Sum_probs=122.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHH
Q 022834 162 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241 (291)
Q Consensus 162 ~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 241 (291)
+.|.+..+|+++|++......+++|++.++++.|++++++++++..+.+.|++++.+.|+++.++|.|+|++..+.||++
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~KDl~ 80 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA 80 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccchhhhccCCCCchHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhh
Q 022834 242 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287 (291)
Q Consensus 242 ~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 287 (291)
++.+++++.|+|+|+.+.+.+.++.+.++|+++.|++++++++++.
T Consensus 81 l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~~ 126 (133)
T d1vpda1 81 NALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKL 126 (133)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999774
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=4.3e-21 Score=142.16 Aligned_cols=126 Identities=21% Similarity=0.307 Sum_probs=120.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccccc-ccccCCCCCCcccccHHHHHH
Q 022834 163 VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKDMR 241 (291)
Q Consensus 163 ~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~ 241 (291)
+|.+..+|+++|++......+++|++.++++.|++++.++++++.+++.|+.++.+.| .+..++|.|+|++..+.||++
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~KDl~ 80 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLG 80 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHhhHHH
Confidence 4789999999999999999999999999999999999999999999999999988877 688999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhh
Q 022834 242 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 288 (291)
Q Consensus 242 ~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 288 (291)
++.+.+++.|+|+|+.+.+.+.++.+.+.|+++.|++++++++++..
T Consensus 81 l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~~~ 127 (132)
T d2cvza1 81 IAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWG 127 (132)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998754
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.84 E-value=2.8e-20 Score=141.24 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=111.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||||||+|.||.+|++.|.++|+++++|+|++++.+.+.++ |+....++.++++++|+||+|| +|+.+++++ +.
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilav-kp~~~~~vl---~~ 76 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGI-KPQLFETVL---KP 76 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECS-CGGGHHHHH---TT
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeec-chHhHHHHh---hh
Confidence 999999999999999999999999999999999999988654 8899999999999999999999 678888888 44
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEE-EecC---CHHHHHHHHHHHHHhc
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVI-LSAG---EKALYDEAISALNVIG 154 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~g---~~~~~~~~~~ll~~~g 154 (291)
++++++|++..++.. ..++.+.+.. +..++ .+| +.+...+.... ++.+ +++..+.++++|+.+|
T Consensus 77 ----l~~~~~iis~~agi~--~~~l~~~l~~-~~~ivr~mP----N~~~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~~G 145 (152)
T d2ahra2 77 ----LHFKQPIISMAAGIS--LQRLATFVGQ-DLPLLRIMP----NMNAQILQSSTALTGNALVSQELQARVRDLTDSFG 145 (152)
T ss_dssp ----SCCCSCEEECCTTCC--HHHHHHHHCT-TSCEEEEEC----CGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTE
T ss_pred ----cccceeEeccccccc--HHHHHhhhcc-cccchhhcc----chhhhcCccceEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 356788887766532 3455555543 34444 566 45554444333 3333 6888999999999999
Q ss_pred cceE
Q 022834 155 KKAF 158 (291)
Q Consensus 155 ~~~~ 158 (291)
..++
T Consensus 146 ~~~~ 149 (152)
T d2ahra2 146 STFD 149 (152)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 7543
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.84 E-value=1.5e-20 Score=139.58 Aligned_cols=125 Identities=21% Similarity=0.303 Sum_probs=116.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccc-------cccccCCCCCCcccc
Q 022834 162 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKG-------PTMLQSNYAPAFPLK 234 (291)
Q Consensus 162 ~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~ 234 (291)
+.|.+..+|+++|++...+..+++|++.++++.|++++.++++++.+.+.|++++.+. ..+..+++.++|++.
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 80 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ 80 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchH
Confidence 3689999999999999999999999999999999999999999999999998877643 357778899999999
Q ss_pred cHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHh
Q 022834 235 HQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286 (291)
Q Consensus 235 ~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 286 (291)
.+.||++++.+++++.|+|+|+.+.+.++++.+.++|+|+.|++++++.|++
T Consensus 81 l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~ 132 (134)
T d3cuma1 81 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDP 132 (134)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999875
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=2e-21 Score=148.19 Aligned_cols=150 Identities=12% Similarity=0.014 Sum_probs=111.1
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcccc
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLE 82 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~ 82 (291)
|||||+|+||.+|+.+|.+.++.+.+|+|++++++.+.+.+.....++.++++++|+||+|||+ .++.+++ +++.
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d-~~i~~v~---~~l~- 76 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPD-RYIKTVA---NHLN- 76 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCT-TTHHHHH---TTTC-
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccc-hhhhHHH---hhhc-
Confidence 7999999999999999977655567999999999999988777777888989999999999976 6788888 6653
Q ss_pred ccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEeeCC
Q 022834 83 QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE 162 (291)
Q Consensus 83 ~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~~~ 162 (291)
.++++++++|+..+... +. .....+.+++..+..+.......+..+++++++++.++.++++|+.+|.+++++++
T Consensus 77 --~~~~ivi~~s~~~~~~~--l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~i~~ 151 (153)
T d2i76a2 77 --LGDAVLVHCSGFLSSEI--FK-KSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS 151 (153)
T ss_dssp --CSSCCEEECCSSSCGGG--GC-SSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECCG
T ss_pred --ccceeeeecccchhhhh--hh-hhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEEeCC
Confidence 37899999998876422 11 11122344445555555555666667788889999999999999999999888764
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.80 E-value=3.1e-19 Score=135.68 Aligned_cols=139 Identities=15% Similarity=0.253 Sum_probs=115.9
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
+||+||| +|.||.+|+++|.++||+|++|||+++.. .++.+.++|++++++|. ..+..++ .+
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~-------------~~~~~~~~~~v~~~~~~-~~~~~v~---~~ 72 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV-------------AESILANADVVIVSVPI-NLTLETI---ER 72 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG-------------HHHHHTTCSEEEECSCG-GGHHHHH---HH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc-------------cchhhhhccccccccch-hhheeee---ec
Confidence 3899999 99999999999999999999999986543 34567789999999965 5677777 78
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEe-cCCHHHHHHHHHHHHHhccce
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILS-AGEKALYDEAISALNVIGKKA 157 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~-~g~~~~~~~~~~ll~~~g~~~ 157 (291)
+.+.++++++++|+++..+...+.+.+.. ...|+ ++|++|+......+...+++ +++.+.++++.++|+.+|.++
T Consensus 73 ~~~~~~~~~iiiD~~Svk~~~~~~~~~~~---~~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ll~~~Ga~v 149 (152)
T d2pv7a2 73 LKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKI 149 (152)
T ss_dssp HGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEE
T ss_pred ccccccCCceEEEecccCHHHHHHHHHHc---cCCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHHHHHhCCEE
Confidence 88888899999999999998888877643 33577 78999988877778776665 557888999999999999887
Q ss_pred Ee
Q 022834 158 FF 159 (291)
Q Consensus 158 ~~ 159 (291)
+.
T Consensus 150 ~e 151 (152)
T d2pv7a2 150 YQ 151 (152)
T ss_dssp EE
T ss_pred Ee
Confidence 63
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.79 E-value=4.1e-19 Score=134.86 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=106.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+|||+|+||.+|+.+|.++| ++|.+|+|++++.+.+.++ |+...++.++ +.++|+||+|| +|+++++++ +
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lav-kP~~~~~v~---~ 75 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAV-KPQDMEAAC---K 75 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECS-CHHHHHHHH---T
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEec-CHHHHHHhH---H
Confidence 99999999999999999998877 8999999999999998865 7887777766 46799999999 678899998 6
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEE-EecC---CHHHHHHHHHHHHHhc
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVI-LSAG---EKALYDEAISALNVIG 154 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~g---~~~~~~~~~~ll~~~g 154 (291)
++. ..+++++++..+.+ .+.+.+.+.........+| +.+...++... ++.+ +++..+.+.++|+.+|
T Consensus 76 ~l~---~~~~~viS~~ag~~--~~~l~~~l~~~~~iir~mp----n~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G 146 (152)
T d1yqga2 76 NIR---TNGALVLSVAAGLS--VGTLSRYLGGTRRIVRVMP----NTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVG 146 (152)
T ss_dssp TCC---CTTCEEEECCTTCC--HHHHHHHTTSCCCEEEEEC----CGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTE
T ss_pred HHh---hcccEEeecccCCC--HHHHHHHhCcCcceEeecc----cchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 664 35678887766644 3556665543222222555 33333333332 3333 5778889999999999
Q ss_pred cceE
Q 022834 155 KKAF 158 (291)
Q Consensus 155 ~~~~ 158 (291)
..++
T Consensus 147 ~~~~ 150 (152)
T d1yqga2 147 LTVW 150 (152)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 7543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.77 E-value=4.8e-18 Score=131.55 Aligned_cols=153 Identities=18% Similarity=0.231 Sum_probs=119.6
Q ss_pred Ce-EEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHCCCc--ccCCHHHH-HhhCCEEEEecCCHHHHHHHH
Q 022834 1 ME-VGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGAT--VGGSPAEV-IKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mk-I~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~-~~~~dvvii~vp~~~~~~~v~ 74 (291)
|| |+|||+|.||.+||+.|.++|+ +|++||++++..+.+.+.+.. ...+..+. ..++|+|++|+| +..+.+++
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p-~~~~~~vl 79 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-VRTFREIA 79 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSC-HHHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCC-chhhhhhh
Confidence 65 9999999999999999999986 688899999999988888753 33444443 347899999995 46788888
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCCh----Hhh----cccceEEEec---CCHHH
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSK----QPA----ETGQLVILSA---GEKAL 142 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~----~~g~~~~~~~---g~~~~ 142 (291)
+++.+.++++++++|+++......+.+.+.+.. .|+ .+|+.|.. ..+ ..|...+++. .+++.
T Consensus 80 ---~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~---~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~ 153 (171)
T d2g5ca2 80 ---KKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKR 153 (171)
T ss_dssp ---HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHH
T ss_pred ---hhhhccccccccccccccccHHHHHHHHHhhcc---cccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHH
Confidence 788888989999999999988888888776654 366 77877652 222 2355555553 37888
Q ss_pred HHHHHHHHHHhccceEee
Q 022834 143 YDEAISALNVIGKKAFFL 160 (291)
Q Consensus 143 ~~~~~~ll~~~g~~~~~~ 160 (291)
++.++++|+.+|.+++++
T Consensus 154 ~~~v~~~~~~lG~~v~~M 171 (171)
T d2g5ca2 154 LKLVKRVWEDVGGVVEYM 171 (171)
T ss_dssp HHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHcCCEEEeC
Confidence 999999999999887653
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.72 E-value=5.5e-17 Score=128.78 Aligned_cols=158 Identities=13% Similarity=0.041 Sum_probs=113.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC--------------------CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------------ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------------~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+|.+|..+|..|+++||+|++||.++++.+.+.+.. ....++..++++++|++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence 9999999999999999999999999999999999988876432 24567888888999999
Q ss_pred EEecCCHH---------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--------CCcEEEcccCCC
Q 022834 61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--------GGHFLEAPVSGS 123 (291)
Q Consensus 61 ii~vp~~~---------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 123 (291)
++|||+|. .+..+......+.....++++||..||+.|.+.+++...+.+. .+.+..+|-+-.
T Consensus 81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~ 160 (202)
T d1mv8a2 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR 160 (202)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc
Confidence 99998752 3344441112333445578899999999999998876654322 234557774432
Q ss_pred ---hHhhcccceEEEecC-CHHHHHHHHHHHHHhccceE
Q 022834 124 ---KQPAETGQLVILSAG-EKALYDEAISALNVIGKKAF 158 (291)
Q Consensus 124 ---~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~~~~ 158 (291)
..........+++|+ +++..+.++++++.+...++
T Consensus 161 ~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ii 199 (202)
T d1mv8a2 161 ESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPII 199 (202)
T ss_dssp TTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEE
T ss_pred ccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeE
Confidence 222112222245554 78888999999999876654
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.66 E-value=6.6e-17 Score=125.87 Aligned_cols=153 Identities=15% Similarity=0.158 Sum_probs=105.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCC--cchhHHHHHCC-------------CcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT--LSKCDELVAHG-------------ATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~--~~~~~~l~~~g-------------~~~~~~~~~~~~~~dvvii~vp 65 (291)
|||+|||+|.||+++|..|+++||+|++|.|. ++..+.+.+.+ +...++.+++++++|+|++|||
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence 99999999999999999999999999999884 44566665432 2235677888999999999996
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCCCH---H----HHHHHHHHHHh--cCCcEEEcccCCChHhhcccceEEEe
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH---E----TSIKISRAITS--KGGHFLEAPVSGSKQPAETGQLVILS 136 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~---~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~ 136 (291)
. +.+++++ +++.+.+++ ..++.++.+.. . ..+.+.+.... ..+.++..|-+.........+..++.
T Consensus 81 s-~~~~~~~---~~l~~~l~~-~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~via 155 (180)
T d1txga2 81 T-DGVLPVM---SRILPYLKD-QYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFS 155 (180)
T ss_dssp G-GGHHHHH---HHHTTTCCS-CEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEE
T ss_pred h-hhhHHHH---Hhhcccccc-ceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEE
Confidence 5 7899999 788888854 55565555521 1 11222221111 12334577766555554455555566
Q ss_pred cCCHHHHHHHHHHHHHhccceE
Q 022834 137 AGEKALYDEAISALNVIGKKAF 158 (291)
Q Consensus 137 ~g~~~~~~~~~~ll~~~g~~~~ 158 (291)
+.+.+..+.++++|+.-..+++
T Consensus 156 s~~~~~a~~i~~~f~~~~frvy 177 (180)
T d1txga2 156 SPSESSANKMKEIFETEYFGVE 177 (180)
T ss_dssp CSCHHHHHHHHHHHCBTTEEEE
T ss_pred cCCHHHHHHHHHHHCCCCEEEE
Confidence 6788888899999876544444
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.66 E-value=5.5e-17 Score=127.02 Aligned_cols=148 Identities=11% Similarity=0.031 Sum_probs=109.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC--------------CcccCCHHHHHhhCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
||+|||+|.||+++|..|+++||+|++|+|+++.++.+.+.+ +.+..+++++++++|+||+|||.
T Consensus 9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs- 87 (189)
T d1n1ea2 9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT- 87 (189)
T ss_dssp EEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCH-
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcH-
Confidence 699999999999999999999999999999999998887532 34567889999999999999965
Q ss_pred HHHHHHHhccCccccc-----cCCCcEEEEcCCCC-HHHHHHHHHHH----HhcCCcEEEcccCCChHhhcccceEEEec
Q 022834 68 AAALSVVFDKGGVLEQ-----ICPGKGYIDMSTVD-HETSIKISRAI----TSKGGHFLEAPVSGSKQPAETGQLVILSA 137 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~-----l~~~~~vv~~s~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 137 (291)
+.+++++ +++.+. +.++..++.++.+. +.+...+.+.+ ....+.++..|-+......+..+.+++.+
T Consensus 88 ~~~~~~~---~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~pt~~viAs 164 (189)
T d1n1ea2 88 QFLRGFF---EKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIAS 164 (189)
T ss_dssp HHHHHHH---HHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEEC
T ss_pred HHHHHHH---HHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCCcEEEEEe
Confidence 6788888 555542 34667788888774 33333333333 33334566777666555444455555666
Q ss_pred CCHHHHHHHHHHHHHh
Q 022834 138 GEKALYDEAISALNVI 153 (291)
Q Consensus 138 g~~~~~~~~~~ll~~~ 153 (291)
.+.+..+.++++|+.-
T Consensus 165 ~~~~~a~~i~~lfst~ 180 (189)
T d1n1ea2 165 ADINVARRLQRIMSTG 180 (189)
T ss_dssp SSHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHHHHhCCC
Confidence 6888888999999753
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.3e-15 Score=117.08 Aligned_cols=153 Identities=13% Similarity=0.152 Sum_probs=111.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC------------------CcccCCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG------------------ATVGGSPAE 52 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g------------------~~~~~~~~~ 52 (291)
||+|||+|.||..+|..++.+||+|++||++++.++...+ .+ +....+..+
T Consensus 6 kvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~~ 85 (192)
T d1f0ya2 6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS 85 (192)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHH
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhHh
Confidence 8999999999999999999999999999999986654322 12 234667778
Q ss_pred HHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccce
Q 022834 53 VIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQL 132 (291)
Q Consensus 53 ~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 132 (291)
++.+||+|+.|+|....++.-+| .++.+..++++++...|++.+. .++...+.. .-.|+....+.++ ..-++
T Consensus 86 a~~~ad~ViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~-p~r~ig~HffnP~---~~~~l 157 (192)
T d1f0ya2 86 VVHSTDLVVEAIVENLKVKNELF--KRLDKFAAEHTIFASNTSSLQI--TSIANATTR-QDRFAGLHFFNPV---PVMKL 157 (192)
T ss_dssp HTTSCSEEEECCCSCHHHHHHHH--HHHTTTSCTTCEEEECCSSSCH--HHHHTTSSC-GGGEEEEEECSST---TTCCE
T ss_pred hhcccceehhhcccchhHHHHHH--HHHhhhcccCceeeccCccccc--chhhhhccC-HhHEEeecccccc---CcccE
Confidence 88999999999999888887666 6788888888888876665443 334432221 2234433333222 22234
Q ss_pred EEEecC---CHHHHHHHHHHHHHhccceEeeCC
Q 022834 133 VILSAG---EKALYDEAISALNVIGKKAFFLGE 162 (291)
Q Consensus 133 ~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~ 162 (291)
+-++.+ +++..+.+.++++.+|+.++.+.+
T Consensus 158 VEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 158 VEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 445554 789999999999999999988765
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.59 E-value=3.1e-15 Score=116.70 Aligned_cols=106 Identities=16% Similarity=0.251 Sum_probs=85.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC---------------CcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---------------ATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g---------------~~~~~~~~~~~~~~dvvii~vp 65 (291)
+||+|||+|.||.++|..|+++||+|++|+|++++.+.+++.+ ....++..+.++++|+||+|+|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~ 81 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 81 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEc
Confidence 6899999999999999999999999999999999999887643 2335678899999999999995
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
. ..++.++ +++.+++.++++|+..++..... ......+...
T Consensus 82 ~-~~~~~~~---~~i~~~l~~~~~iv~~~g~~~~~-~~~~~~~~~~ 122 (184)
T d1bg6a2 82 A-IHHASIA---ANIASYISEGQLIILNPGATGGA-LEFRKILREN 122 (184)
T ss_dssp G-GGHHHHH---HHHGGGCCTTCEEEESSCCSSHH-HHHHHHHHHT
T ss_pred h-hHHHHHH---HHhhhccCCCCEEEEeCCCCccH-HHHHHHHHHh
Confidence 5 6688898 88999998888888665554333 3344445444
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.59 E-value=2.1e-16 Score=126.87 Aligned_cols=154 Identities=10% Similarity=0.050 Sum_probs=119.3
Q ss_pred EEEEecCh--hhHHHHH------HHHhCCCcEEEEcCCcchh-HHHHH--------------------------------
Q 022834 3 VGFLGLGI--MGKAISM------NLLRNGFKVTVWNRTLSKC-DELVA-------------------------------- 41 (291)
Q Consensus 3 I~iIG~G~--mG~~la~------~l~~~g~~V~~~~r~~~~~-~~l~~-------------------------------- 41 (291)
+.++|+|. ||..+.. +|++.|+.|++.|.++++. +.+.+
T Consensus 43 ~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~ 122 (242)
T d2b0ja2 43 SITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLV 122 (242)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESS
T ss_pred eeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhcC
Confidence 34556664 6656655 6789999999999987653 32221
Q ss_pred ----CCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 42 ----HGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 42 ----~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
.|+.+++|+.|+++++|+||+|+|++..+.+++ +++.+.++++++|+|+|+..+....++.+.+..+++.|+.
T Consensus 123 ~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi---~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~ 199 (242)
T d2b0ja2 123 HPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITS 199 (242)
T ss_dssp CGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred CHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH---HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEEC
Confidence 135667899999999999999999988889999 8999999999999999999999999999988888899986
Q ss_pred cccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 118 APVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 118 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+..+++. ...+.......++++.++++.++|+.+|+.++.+
T Consensus 200 ~hp~a~pe-~~g~~li~~~~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 200 YHPGCVPE-MKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp CBCSSCTT-TCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCccCcCc-cccceEEecCCCCHHHHHHHHHHHHHHCCCeEeC
Confidence 55444332 2223333345569999999999999999987764
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.53 E-value=1e-14 Score=113.72 Aligned_cols=152 Identities=13% Similarity=0.156 Sum_probs=108.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..+|..++.+|++|++||++++.++...+ .+ +....+.+ .+.++
T Consensus 6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~a 84 (186)
T d1wdka3 6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYG-DFGNV 84 (186)
T ss_dssp SEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSST-TGGGC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccc-ccccc
Confidence 7999999999999999999999999999999987665322 11 22333333 36789
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA 137 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 137 (291)
|+|+.|+|....++.-+| .++.+..++++++...|++.+. .++.+.+.. .-.|+....+-++.. -+++-++.
T Consensus 85 dlViEav~E~l~~K~~lf--~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~~-p~r~~g~Hf~nP~~~---~~lVEiv~ 156 (186)
T d1wdka3 85 DLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTISI--SLLAKALKR-PENFVGMHFFNPVHM---MPLVEVIR 156 (186)
T ss_dssp SEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCH--HHHGGGCSC-GGGEEEEECCSSTTT---CCEEEEEE
T ss_pred ceeeeeecchHHHHHHHH--HHHHhhcCCCeeEEeccccccH--HHHHHhccC-chheEeeccccCccc---CCeEEECC
Confidence 999999999888887666 7788888888888876666543 334333222 224554443333322 23343444
Q ss_pred C---CHHHHHHHHHHHHHhccceEeeCC
Q 022834 138 G---EKALYDEAISALNVIGKKAFFLGE 162 (291)
Q Consensus 138 g---~~~~~~~~~~ll~~~g~~~~~~~~ 162 (291)
+ +++.++.+..+++.+|+.++.+.+
T Consensus 157 ~~~T~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 157 GEKSSDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 4 788999999999999999888754
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=4.4e-15 Score=113.92 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=75.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCC-------cccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-------TVGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~-------~~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
|||+|||+|.||+.++..|+++||+|++++|++++.+.....+. ....+..+....+|+||+|| ++.+++++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~v-ka~~~~~~ 79 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTL-KAWQVSDA 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECS-CGGGHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEee-cccchHHH
Confidence 99999999999999999999999999999999877654332221 22334456678999999999 66889999
Q ss_pred HhccCccccccCCCcEEEEcCCCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
+ +.+.+.+.+++.|+.++++.
T Consensus 80 ~---~~l~~~~~~~~~Iv~~qNG~ 100 (167)
T d1ks9a2 80 V---KSLASTLPVTTPILLIHNGM 100 (167)
T ss_dssp H---HHHHTTSCTTSCEEEECSSS
T ss_pred H---HhhccccCcccEEeeccCcc
Confidence 8 78888888899999988874
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.43 E-value=2.6e-13 Score=106.71 Aligned_cols=113 Identities=17% Similarity=0.151 Sum_probs=82.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC------------------CcccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG------------------ATVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g------------------~~~~~~~~~~~~~~dvvii 62 (291)
|||+|||+|.+|..+|..|+ .||+|++||.++++.+.++... .....+......++|++++
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 99999999999999998886 5999999999999988876421 1223355556678999999
Q ss_pred ecCCHHH----------HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEccc
Q 022834 63 MLADPAA----------ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120 (291)
Q Consensus 63 ~vp~~~~----------~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (291)
|||.+.. ++.+. +.+. ...++.+++..|+..|.+.+++...+.+. .+...|.
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~---~~~~-~~~~~~~iii~Stv~pgt~~~~~~~~~~~--~~~~~PE 141 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVI---KEVL-SVNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPE 141 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHH---HHHH-HHCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCC
T ss_pred cCCccccccCCCcceeEEeehh---hhhh-hcccceeEEeeeecCceeeeeeeeccchh--hhccchh
Confidence 9987632 22222 2222 23467889999999999999887766543 3445563
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.08 E-value=2.7e-10 Score=88.88 Aligned_cols=66 Identities=24% Similarity=0.392 Sum_probs=50.5
Q ss_pred CeEEEE-ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC-------CcccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFL-GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-------ATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iI-G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-------~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|| |+|.||.+||..|+++||+|++|+|++++++.+.++. .....+........+....+.+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPW 74 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheee
Confidence 999999 8999999999999999999999999999988876641 11222344444456666666643
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.07 E-value=7.9e-11 Score=90.58 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=84.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|+|||+|.+|..+++.+..-|.+|.+|||++.. .......+.++++++||+|++++|...+...++- ++.
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~--~~~ 114 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------GPWRFTNSLEEALREARAAVCALPLNKHTRGLVK--YQH 114 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------SSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC--HHH
T ss_pred ceEEEeccccccccceeeeeccccccccccccccc------cceeeeechhhhhhccchhhcccccccccccccc--cce
Confidence 47999999999999999999999999999997643 2334567899999999999999998776666652 255
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++-+.....+.+.+.+.+...
T Consensus 115 l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i 147 (181)
T d1qp8a1 115 LALMAEDAVFVNVGRAEVLDRDGVLRILKERPQ 147 (181)
T ss_dssp HTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTT
T ss_pred eeeccccceEEeccccccccchhhhhhcccCcE
Confidence 667789999999998876666777777766543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.04 E-value=2.6e-10 Score=88.40 Aligned_cols=111 Identities=10% Similarity=0.098 Sum_probs=89.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
.+|||||+|++|..+++.+..-|.+|..||+...........+.....+.+++++.||+|++++|-....+.++- ++.
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~--~~~ 125 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN--KAT 125 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBS--HHH
T ss_pred cceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheec--HHH
Confidence 379999999999999999999999999999876655544444556667899999999999999998776666662 255
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++-+....-+.+.+.+.+..+
T Consensus 126 l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i 158 (191)
T d1gdha1 126 IKSLPQGAIVVNTARGDLVDNELVVAALEAGRL 158 (191)
T ss_dssp HTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred hhCcCCccEEEecCCccchhhHHHHHHHHcCCc
Confidence 667889999999999877777777777766543
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.02 E-value=2e-10 Score=89.12 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=86.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|++|..+++.+..-|.+|..||+.... +.....+.....++++++++||+|++++|-....+.++- .+.
T Consensus 50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~-~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~--~~~ 126 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD-GVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN--DFT 126 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCT-THHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS--HHH
T ss_pred ceEEEeccccccccceeeeeccccceeeccCcccc-cchhhhccccccchhhccccCCEEEEeecccccchhhhh--HHH
Confidence 37999999999999999999999999999987543 223344677778999999999999999987665555541 244
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
...++++.++|++|-+.....+.+.+.+.+..
T Consensus 127 l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~ 158 (193)
T d1mx3a1 127 VKQMRQGAFLVNTARGGLVDEKALAQALKEGR 158 (193)
T ss_dssp HTTSCTTEEEEECSCTTSBCHHHHHHHHHHTS
T ss_pred HhccCCCCeEEecCCceEEcHHHHHHHHHcCC
Confidence 56778999999999887766677777776643
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=99.01 E-value=2.1e-10 Score=88.89 Aligned_cols=110 Identities=14% Similarity=0.076 Sum_probs=89.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|+|||+|++|..+++.+..-|.+|..||+...........+.....+.++++++||+|++++|-....+.++- ++.
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~--~~~ 122 (188)
T d2naca1 45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIN--DET 122 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBS--HHH
T ss_pred cceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhhH--HHH
Confidence 479999999999999999998899999999876655555556777788999999999999999987766666652 255
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
...++++.++|+++-+.....+.+.+.+.+..
T Consensus 123 l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~ 154 (188)
T d2naca1 123 LKLFKRGAYIVNTARGKLCDRDAVARALESGR 154 (188)
T ss_dssp HTTSCTTEEEEECSCGGGBCHHHHHHHHHTTS
T ss_pred HHhCCCCCEEEecCchhhhhHHHHHHHHhCCC
Confidence 66788999999999887766677777776643
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.94 E-value=9.2e-10 Score=85.55 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=82.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
.+|||||+|++|..+++.+..-|.+|.+||+...... ...+.. ..+.++++++||+|++++|.....+.++- ++.
T Consensus 44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~--~~~~~~-~~~l~~~l~~sDii~~~~plt~~T~~li~--~~~ 118 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL--EKKGYY-VDSLDDLYKQADVISLHVPDVPANVHMIN--DES 118 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH--HHTTCB-CSCHHHHHHHCSEEEECSCCCGGGTTCBS--HHH
T ss_pred CeEEEecccccchhHHHhHhhhcccccccCccccccc--ccceee-eccccccccccccccccCCcccccccccc--HHH
Confidence 3799999999999999999999999999998754322 233443 46899999999999999997666665552 244
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
...++++.++|++|-+.....+.+.+.+.+..
T Consensus 119 l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~ 150 (197)
T d1j4aa1 119 IAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGK 150 (197)
T ss_dssp HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTS
T ss_pred HhhhCCccEEEecCchhhhhhHHHHHHHhccc
Confidence 56678999999999887666677777776543
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.93 E-value=1.8e-09 Score=82.73 Aligned_cols=108 Identities=23% Similarity=0.236 Sum_probs=76.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCC---------cccCCHHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA---------TVGGSPAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~---------~~~~~~~~~~~~~dvvii~vp~~~~~~ 71 (291)
.||.|||+|.||..++..|+++||+|+++||+.++++.+.+... .......+.+...|+++.++|......
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~ 82 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHAT 82 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhhhH
Confidence 47999999999999999999999999999999999999987531 111223345667899999987654332
Q ss_pred HHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+. ......+..+++.+...+. ...+.+.....+..++
T Consensus 83 -~~------~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 119 (182)
T d1e5qa1 83 -VI------KSAIRQKKHVVTTSYVSPA-MMELDQAAKDAGITVM 119 (182)
T ss_dssp -HH------HHHHHHTCEEECSSCCCHH-HHHTHHHHHHTTCEEE
T ss_pred -HH------HHHHhhccceeecccCcHH-HHHHHHHhccccceee
Confidence 22 1223355677887766554 4556666666655555
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=7.2e-09 Score=78.32 Aligned_cols=108 Identities=13% Similarity=0.169 Sum_probs=78.2
Q ss_pred CeEEEEecChhhHH-HHHHHHhC-CCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||||||+|.||.. +...+.+. ++++. ++|+++++++.+.+. ++...++.+++.++.|+|++|+|...+.+-+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~-- 79 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS-- 79 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH--
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhcccccc--
Confidence 69999999999975 56667654 56654 789999998887654 78888899998899999999999987766555
Q ss_pred cCccccccCCCc-EEEEc-CCCCHHHHHHHHHHHHhcCCcE
Q 022834 77 KGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 77 ~~~l~~~l~~~~-~vv~~-s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
. .+..|. ++++- -.......+++.+...+.+..+
T Consensus 80 -~----al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~ 115 (164)
T d1tlta1 80 -T----LLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL 115 (164)
T ss_dssp -H----HHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred -c----cccccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence 2 233444 44442 1234667777777666666544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.88 E-value=1.1e-08 Score=74.30 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=72.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCccc----CCHHHH----HhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVG----GSPAEV----IKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~----~~~~~~----~~~~dvvii~vp~~~~~~ 71 (291)
|||.|+|+|.+|..+++.|.+.|++|++.|+++++++.+.+. +..+. .+.+-+ ++++|.++.+++++..-.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~N~ 80 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNL 80 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHHHH
Confidence 999999999999999999999999999999999999988765 54431 222222 357899999887754322
Q ss_pred HHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.+ ..+.+.+...++|+-.... .. .+.+.+.|+.++-.|
T Consensus 81 -~~---~~~~k~~~~~~iI~~~~~~--~~----~~~l~~~G~d~vi~p 118 (132)
T d1lssa_ 81 -MS---SLLAKSYGINKTIARISEI--EY----KDVFERLGVDVVVSP 118 (132)
T ss_dssp -HH---HHHHHHTTCCCEEEECSST--TH----HHHHHHTTCSEEECH
T ss_pred -HH---HHHHHHcCCceEEEEecCH--HH----HHHHHHCCCCEEECH
Confidence 12 1233445555666544433 22 233445566555444
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.86 E-value=6e-09 Score=75.98 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=72.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-------cCCHHHH-HhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEV-IKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~-~~~~dvvii~vp~~~~~~~ 72 (291)
.++.|+|+|.+|..++..|.+.|++|+++|.++++++.+.+.+..+ ...+.++ +.++|.+|++++++.....
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~ 80 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST 80 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence 4789999999999999999999999999999999999988776432 1122333 5689999999986554433
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
++ ...........+++- ++ .+.. .+.+...|..++-.|
T Consensus 81 ~~---~~~~~~~~~~~iiar-~~-~~~~----~~~l~~~Gad~vi~p 118 (134)
T d2hmva1 81 LT---TLLLKELDIPNIWVK-AQ-NYYH----HKVLEKIGADRIIHP 118 (134)
T ss_dssp HH---HHHHHHTTCSEEEEE-CC-SHHH----HHHHHHHTCSEEECH
T ss_pred HH---HHHHHHcCCCcEEee-cc-cHhH----HHHHHHCCCCEEECh
Confidence 33 223333433444443 22 2333 233445566665444
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=1.1e-09 Score=84.68 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=83.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.+|..+++.+..-|.+|..||+...... .......+.+++++.+|+|++++|-......++- ++.
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~--~~~ 118 (188)
T d1sc6a1 45 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMG--AKE 118 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBC--HHH
T ss_pred eEEEEeecccchhhhhhhcccccceEeeccccccchh----hhhhhhhhHHHHHhhccceeecccCCcchhhhcc--HHH
Confidence 4899999999999999999999999999998644321 1334456899999999999999987666666552 356
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++-+.....+.+.+.+.+.
T Consensus 119 l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~ 149 (188)
T d1sc6a1 119 ISLMKPGSLLINASRGTVVDIPALADALASK 149 (188)
T ss_dssp HHHSCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred HhhCCCCCEEEEcCcHHhhhhHHHHHHHHcC
Confidence 6678899999999998777777787777664
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.85 E-value=2.2e-09 Score=83.71 Aligned_cols=105 Identities=15% Similarity=0.136 Sum_probs=81.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|++|..+++.+..-|.+|.+||+.+..... ... ...+.+++++.||+|++++|.....+.++- ++.
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~---~~~-~~~~l~~l~~~~D~v~~~~plt~~T~~li~--~~~ 119 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH---PDF-DYVSLEDLFKQSDVIDLHVPGIEQNTHIIN--EAA 119 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC---TTC-EECCHHHHHHHCSEEEECCCCCGGGTTSBC--HHH
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhhh---cch-hHHHHHHHHHhcccceeeeccccccccccc--HHH
Confidence 47999999999999999999999999999987554211 122 245889999999999999998776666552 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++-+.....+.+.+.+.+.
T Consensus 120 l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g 150 (199)
T d1dxya1 120 FNLMKPGAIVINTARPNLIDTQAMLSNLKSG 150 (199)
T ss_dssp HHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred hhccCCceEEEecccHhhhhhHHHHHHHhcC
Confidence 5678899999999988766667777766554
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.83 E-value=1.1e-08 Score=76.02 Aligned_cols=91 Identities=21% Similarity=0.205 Sum_probs=73.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc-hhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
++|+|||+|+-|.+-|.+|..+|.+|++--|... ..+...+.|..+. +.+|+++.+|+|++.+|+ +.-.+++. +.
T Consensus 17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-~~~eA~~~aDiim~L~PD-~~q~~vy~--~~ 92 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPD-EFQGRLYK--EE 92 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCH-HHHHHHHH--HH
T ss_pred CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-cHHHHhhhcCeeeeecch-HHHHHHHH--Hh
Confidence 4799999999999999999999999999877544 4456667788775 889999999999999976 45566662 36
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
+.+.+++++.+.. +.+
T Consensus 93 I~p~lk~g~~L~F-aHG 108 (182)
T d1np3a2 93 IEPNLKKGATLAF-AHG 108 (182)
T ss_dssp TGGGCCTTCEEEE-SCC
T ss_pred hhhhcCCCcEEEE-ecc
Confidence 8999999887664 455
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.83 E-value=4e-09 Score=81.19 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=85.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++++|||+|.+|..+++.+..-|.+|..||+...... ....+... .+.++++++||+|++++|-..+.+.++- ++.
T Consensus 45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~-~~~~~~~~-~~l~ell~~sDiv~~~~Plt~~T~~lin--~~~ 120 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPAR-AAQLGIEL-LSLDDLLARADFISVHLPKTPETAGLID--KEA 120 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHH-HHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred eeeeeccccchhHHHHHHhhhccceEEeecCCCChhH-HhhcCcee-ccHHHHHhhCCEEEEcCCCCchhhhhhh--HHH
Confidence 4799999999999999999988999999998765433 23335543 5889999999999999998777666652 255
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
...++++.++|+++-+.....+.+.+.+....
T Consensus 121 l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~ 152 (184)
T d1ygya1 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGH 152 (184)
T ss_dssp HTTSCTTEEEEECSCTTSBCHHHHHHHHHTSS
T ss_pred HhhhCCCceEEEecchhhhhhHHHHHHHhcCc
Confidence 66788999999999987777777877776653
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.79 E-value=2.5e-09 Score=80.28 Aligned_cols=67 Identities=27% Similarity=0.401 Sum_probs=56.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-CCcc--cCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATV--GGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~~~--~~~~~~~~~~~dvvii~vp~~ 67 (291)
.+|.|||+|.||..++..|...|. ++++++|+.++++.+... |... .++..+.+.++|+||.|++.+
T Consensus 25 ~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~ 95 (159)
T d1gpja2 25 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP 95 (159)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCC
Confidence 379999999999999999999997 699999999999888765 5433 346677788999999999654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.75 E-value=1.4e-08 Score=74.90 Aligned_cols=91 Identities=12% Similarity=0.152 Sum_probs=62.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHH--------CC--CcccCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVA--------HG--ATVGGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~--------~g--~~~~~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+|||+|.+|..++..|+..| .++.++|+++++++.... .+ .....+.+ .+++||+|+++...+.
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~~~ 84 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGAPQ 84 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC--
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccccc
Confidence 79999999999999999999987 589999999877653321 11 12233444 4679999999874432
Q ss_pred ---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 ---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.++++. +++.+. .++.+++..|+-
T Consensus 85 ~~g~~r~~l~~~N~~i~~~~~---~~i~~~-~p~aivivvtNP 123 (146)
T d1ez4a1 85 KPGESRLDLVNKNLNILSSIV---KPVVDS-GFDGIFLVAANP 123 (146)
T ss_dssp --------CHHHHHHHHHHHH---HHHHHT-TCCSEEEECSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHH---HHHhhc-CCCcEEEEeCCc
Confidence 133444 445544 367777777664
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.75 E-value=4.6e-08 Score=75.19 Aligned_cols=108 Identities=15% Similarity=0.211 Sum_probs=77.5
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHC-C----CcccCCHHHHHh--hCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-G----ATVGGSPAEVIK--KCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g----~~~~~~~~~~~~--~~dvvii~vp~~~~~~ 71 (291)
|||||||+|.||..++..+... +++|+ ++|+++++++.+.+. + ..+.++.+++++ +.|+|++|+|...+.+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~ 81 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE 81 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence 6999999999999999999875 56766 679999988877653 3 456789999875 5799999999887776
Q ss_pred HHHhccCccccccCCCcEEE-Ec-CCCCHHHHHHHHHHHHhcCCcE
Q 022834 72 SVVFDKGGVLEQICPGKGYI-DM-STVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv-~~-s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
-+. ..+..|..|+ .- -.......+++.+...+.+..+
T Consensus 82 ~~~-------~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~ 120 (184)
T d1ydwa1 82 WAI-------KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI 120 (184)
T ss_dssp HHH-------HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred hhh-------hhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence 555 2233454443 31 1235667777777666666544
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.73 E-value=7.1e-08 Score=65.68 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC--CcccccccccccccCCCCCCcccccHHHHHH
Q 022834 164 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI--ANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241 (291)
Q Consensus 164 ~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 241 (291)
..|+..|++.|.+.+..+++++|...+|++.|+|...+.+.+..... .++.+ + .+.+|+...+..||+.
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~~~~~~-------~--~pG~G~GG~ClpKD~~ 72 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYY-------M--RPGFAFGGSCLPKDVR 72 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTTTSSTT-------C--SCCSCCCSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccccccccc-------c--CCcccCCccccchhHH
Confidence 46899999999999999999999999999999999999999876531 12111 1 1234677888999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHH
Q 022834 242 LALALGDENAVSMPIAAAANEAFK 265 (291)
Q Consensus 242 ~~~~~a~~~g~~~p~~~~~~~~~~ 265 (291)
.+...+++.+++.++++++.+..+
T Consensus 73 al~~~a~~~~~~~~ll~~~~~~N~ 96 (98)
T d1mv8a1 73 ALTYRASQLDVEHPMLGSLMRSNS 96 (98)
T ss_dssp HHHHHHHHTTCCCTTGGGHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHh
Confidence 999999999999999998877654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.67 E-value=5.2e-08 Score=73.66 Aligned_cols=108 Identities=9% Similarity=0.110 Sum_probs=74.8
Q ss_pred CeEEEEecChhhHH-HHHHHHhC-CCcEEEEcCCcchhHHHHHC-CC-cccCCHHHHHh-hCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLRN-GFKVTVWNRTLSKCDELVAH-GA-TVGGSPAEVIK-KCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~~-g~~V~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~-~~dvvii~vp~~~~~~~v~~ 75 (291)
|||||||+|.||.. +...+.+. +.++.++|+++++.+.+.+. +. ...++.+++++ +.|+|++|+|...+.+-+.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~- 80 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA- 80 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH-
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccccccccccc-
Confidence 79999999999976 56667655 45788899999999888764 43 35667777764 5799999999887766655
Q ss_pred ccCccccccCCCc-EEEEc-CCCCHHHHHHHHHHHHhcCCcE
Q 022834 76 DKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 76 ~~~~l~~~l~~~~-~vv~~-s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
.+ +..|. +++.- -.......+++.+...+.+..+
T Consensus 81 ---~a---l~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~ 116 (167)
T d1xeaa1 81 ---FF---LHLGIPTFVDKPLAASAQECENLYELAEKHHQPL 116 (167)
T ss_dssp ---HH---HHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred ---cc---cccccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 22 22333 44541 1234566677777666666544
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.66 E-value=3.1e-08 Score=72.53 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=63.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHHC---------CCcccCCHHHHHhhCCEEEEecCCHH-
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH---------GATVGGSPAEVIKKCTITIGMLADPA- 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~---------g~~~~~~~~~~~~~~dvvii~vp~~~- 68 (291)
|||+|||+|.+|..++..++.++ .++.++|+++++++....+ ......+..+.++++|+|+++...+.
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 80 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK 80 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence 89999999999999999998877 4799999998776543211 12223333456789999999973221
Q ss_pred --------------HHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 69 --------------AALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 69 --------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
-++++. +.+.+.- ++.+++..||-.
T Consensus 81 ~g~~r~dl~~~N~~I~~~i~---~~i~~~~-p~aivivvtNPv 119 (140)
T d1a5za1 81 PGETRLQLLGRNARVMKEIA---RNVSKYA-PDSIVIVVTNPV 119 (140)
T ss_dssp SSCCHHHHHHHHHHHHHHHH---HHHHHHC-TTCEEEECSSSH
T ss_pred CCcchhhhhccccchHHHHH---HHHHhcC-CCcEEEEeCCcH
Confidence 133444 4444443 677777776653
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.65 E-value=2.3e-08 Score=73.47 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=63.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHH---C-------CCccc-CCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVA---H-------GATVG-GSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~---~-------g~~~~-~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.+|..++..|+..+ .++.++|+++++.+.... + ...+. ++..+.++++|+++++...+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~ 80 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence 99999999999999999999987 489999999887654321 1 22222 34455678999999996321
Q ss_pred ---------------HHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 ---------------AAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ---------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++. +.+.+.- ++.+++..||-
T Consensus 81 ~~~g~~r~~l~~~N~~i~~~i~---~~i~~~~-p~aivivvtNP 120 (142)
T d1guza1 81 RKPGMTREDLLMKNAGIVKEVT---DNIMKHS-KNPIIIVVSNP 120 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHH---HHHHHHC-SSCEEEECCSS
T ss_pred CCCCCchHHHHHHHHHHHHHHH---HHhhccC-CCeEEEEecCC
Confidence 1234444 4454443 67777777664
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.61 E-value=2.4e-08 Score=75.78 Aligned_cols=103 Identities=9% Similarity=0.125 Sum_probs=69.2
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||||||+|.||..++..|.+. +++++ +++++++.... .+.....+..++..+.|+|++|+|...+.+-+.
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~---- 76 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---TPVFDVADVDKHADDVDVLFLCMGSATDIPEQA---- 76 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH----
T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---cccccchhhhhhccccceEEEeCCCcccHHHHH----
Confidence 4799999999999999999874 56654 67888665332 234445566667788999999999877655444
Q ss_pred ccccccCCCcEEEEcCCC---CHHHHHHHHHHHHhcCC
Q 022834 79 GVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGG 113 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~~~~~ 113 (291)
+.+..|..+|.+... .+...+.+.+...+.+.
T Consensus 77 ---~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~ 111 (170)
T d1f06a1 77 ---PKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGN 111 (170)
T ss_dssp ---HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred ---HHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCc
Confidence 345677777754432 34445555554444443
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.56 E-value=3e-07 Score=70.28 Aligned_cols=108 Identities=20% Similarity=0.181 Sum_probs=74.3
Q ss_pred CeEEEEecChhhHH-HHHHHHhCC--CcEE-EEcCCcchhHHHHHC-CC-cccCCHHHHHh--hCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLRNG--FKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~~g--~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvvii~vp~~~~~~~ 72 (291)
+||||||+|.+|.. ....+.+.+ +++. ++|+++++++.+.+. +. ..+++.+++++ +.|+|++|+|...+.+-
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~~ 83 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPF 83 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccccccc
Confidence 37999999999986 577777643 4555 789999998887654 43 46789999886 47899999988777655
Q ss_pred HHhccCccccccCCCc-EEEEc-CCCCHHHHHHHHHHHHhcCCcE
Q 022834 73 VVFDKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~-~vv~~-s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
+. . .+..|. ++++- -........++.+...+.+..+
T Consensus 84 ~~----~---al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~ 121 (181)
T d1zh8a1 84 IE----K---ALRKGVHVICEKPISTDVETGKKVVELSEKSEKTV 121 (181)
T ss_dssp HH----H---HHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCE
T ss_pred cc----c---ccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCeE
Confidence 54 2 233444 44432 1335667777777666665543
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.56 E-value=9.6e-08 Score=73.42 Aligned_cols=90 Identities=21% Similarity=0.170 Sum_probs=70.5
Q ss_pred eEEEEecChhhHHHHHHHHhCC------CcEEEEcC-CcchhHHHHHCCCcc----cCCHHHHHhhCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG------FKVTVWNR-TLSKCDELVAHGATV----GGSPAEVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g------~~V~~~~r-~~~~~~~l~~~g~~~----~~~~~~~~~~~dvvii~vp~~~~~ 70 (291)
||+|||+|+-|.+.|.+|..+| .+|++.-| .....+...+.|..+ +.+.+|+++.+|+|++.+|+ +.-
T Consensus 46 kIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPD-e~Q 124 (226)
T d1qmga2 46 QIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISD-SAQ 124 (226)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCH-HHH
T ss_pred EEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecch-HHH
Confidence 6999999999999999999955 55776644 445567777788763 34788999999999999977 455
Q ss_pred HHHHhccCccccccCCCcEEEEcCCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.+++ +++.+.+++|+.+.. +-+
T Consensus 125 ~~vy---~~I~p~Lk~G~~L~F-aHG 146 (226)
T d1qmga2 125 ADNY---EKVFSHMKPNSILGL-SHG 146 (226)
T ss_dssp HHHH---HHHHHHSCTTCEEEE-SSS
T ss_pred HHHH---HHHHHhcCCCceeee-cch
Confidence 6688 678899999987664 455
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.55 E-value=8.7e-08 Score=71.23 Aligned_cols=65 Identities=11% Similarity=0.128 Sum_probs=50.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------C----CcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------G----ATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g----~~~~~~~~~~~~~~dvvii~vp 65 (291)
+||+|||+|.+|..++..|+..++ ++.++|.++++++....+ + .....+.++.++++|+|+++..
T Consensus 8 ~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag 85 (154)
T d1pzga1 8 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 85 (154)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence 499999999999999999888775 799999998876543321 1 1224456678899999999873
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.53 E-value=1.1e-07 Score=70.22 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=63.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHC----------CCcccCCHHHHHhhCCEEEEecCCH--
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIKKCTITIGMLADP-- 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~----------g~~~~~~~~~~~~~~dvvii~vp~~-- 67 (291)
||+|||+|.+|..++..|+..|. ++.++|+++++++....+ ...+.....+.+++||+|+++...+
T Consensus 8 KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~~~~ 87 (148)
T d1ldna1 8 RVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQK 87 (148)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCCCC
T ss_pred eEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecccccc
Confidence 89999999999999999998775 799999998875432211 2333334446678999999986432
Q ss_pred -------------HHHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 68 -------------AAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 68 -------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
..++++. +++.++- ++.+++..|+-.
T Consensus 88 ~~~~R~dl~~~N~~i~~~i~---~~i~~~~-p~a~~ivvtNPv 126 (148)
T d1ldna1 88 PGETRLDLVDKNIAIFRSIV---ESVMASG-FQGLFLVATNPV 126 (148)
T ss_dssp TTTCSGGGHHHHHHHHHHHH---HHHHHHT-CCSEEEECSSSH
T ss_pred cCcchhHHHHHHHHHHHHHH---HHHHhhC-CCceEEEecCcc
Confidence 1234444 4555554 667777766653
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.52 E-value=6.2e-08 Score=70.95 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=61.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHH----HH----CC--Cc--ccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL----VA----HG--AT--VGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l----~~----~g--~~--~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|.+|..++..|+..|. ++.++|+++++++.. .+ .. .. ...+. +.++++|+|+++...
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag~ 79 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL 79 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEeccc
Confidence 999999999999999999998773 799999998876432 11 11 11 22343 567899999998742
Q ss_pred HH---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 67 PA---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 67 ~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+. -++++. +++.+. .++.+++..||-
T Consensus 80 ~~~~g~~r~~l~~~n~~i~~~i~---~~i~~~-~p~aivivvtNP 120 (142)
T d1ojua1 80 ARKPGMTRLDLAHKNAGIIKDIA---KKIVEN-APESKILVVTNP 120 (142)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHH---HHHHTT-STTCEEEECSSS
T ss_pred cCCCCCchHHHHHHhhHHHHHHH---HHHHhh-CCCcEEEEecCC
Confidence 21 233344 344444 367788877774
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.50 E-value=2.1e-06 Score=58.20 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHH
Q 022834 165 NGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLAL 244 (291)
Q Consensus 165 ~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 244 (291)
.|+..|++.|.+.+..+++++|...+|++.|++...+.+.+.......+.+ .+...|+...+..||+..++
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~~~~---------~~pg~g~GG~ClpKD~~al~ 73 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHY---------NNPSFGYGGYSLPKDTKQLL 73 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTCSSS---------CCCCSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccCCcc---------ccCCCCcccccCcccHHHHH
Confidence 588999999999999999999999999999999999988887553222111 12345677888999999885
Q ss_pred HHHhhcCCCchHHHHHHHHHHH
Q 022834 245 ALGDENAVSMPIAAAANEAFKK 266 (291)
Q Consensus 245 ~~a~~~g~~~p~~~~~~~~~~~ 266 (291)
+...+++.++++++.+..+.
T Consensus 74 --~~~~~~~~~ll~~~~~~N~~ 93 (98)
T d1dlja1 74 --ANYNNIPQTLIEAIVSSNNV 93 (98)
T ss_dssp --HHHTTSSCSHHHHHHHHHHH
T ss_pred --HHhcCCCcHHHHHHHHHHHh
Confidence 45668899999998877654
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.44 E-value=1.7e-07 Score=68.58 Aligned_cols=92 Identities=13% Similarity=0.181 Sum_probs=57.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHH---CC------CcccCCHHHHHhhCCEEEEecCCHH-
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVA---HG------ATVGGSPAEVIKKCTITIGMLADPA- 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~---~g------~~~~~~~~~~~~~~dvvii~vp~~~- 68 (291)
.||+|||+|.+|..++..+..++. ++.++|+++++++.... +. ........+.+++||+|+++...+.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 81 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK 81 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence 489999999999999999999875 79999999887643332 11 1122233455789999999853221
Q ss_pred --------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 --------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 --------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
-++++. +.+.+.- ++.+++..||-
T Consensus 82 ~~~~r~~l~~~N~~i~~~i~---~~i~~~~-p~ai~ivvtNP 119 (142)
T d1y6ja1 82 PGETRLDLAKKNVMIAKEVT---QNIMKYY-NHGVILVVSNP 119 (142)
T ss_dssp ---CHHHHHHHHHHHHHHHH---HHHHHHC-CSCEEEECSSS
T ss_pred cCcchhHHhhHHHHHHHHHH---HHhhccC-CCceEEEecCh
Confidence 123333 3444433 66677766664
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=4.4e-07 Score=67.17 Aligned_cols=88 Identities=17% Similarity=0.114 Sum_probs=67.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+++|+|+|.+|..+|..+...|.+|++++++|-++-+..-.|..+. +.++++..+|++++|+.....+. .+-.
T Consensus 26 ~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTGn~~vI~------~eh~ 98 (163)
T d1li4a1 26 VAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTGCIDIIL------GRHF 98 (163)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCSCSBC------HHHH
T ss_pred EEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhhhccEEEecCCCccchh------HHHH
Confidence 7899999999999999999999999999999866555555676665 78899999999999986532221 1223
Q ss_pred cccCCCcEEEEcCCC
Q 022834 82 EQICPGKGYIDMSTV 96 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~ 96 (291)
+.++++.++.+.+..
T Consensus 99 ~~MKdgaIL~N~Ghf 113 (163)
T d1li4a1 99 EQMKDDAIVCNIGHF 113 (163)
T ss_dssp TTCCTTEEEEECSSS
T ss_pred HhccCCeEEEEeccc
Confidence 456788888876654
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.42 E-value=2.7e-07 Score=68.66 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=61.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHH----HC----CC--cccCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----AH----GA--TVGGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~----~~----g~--~~~~~~~~~~~~~dvvii~vp~~~ 68 (291)
.||+|||+|.+|..++..|...|. ++.++|+++++++... .. +. .......+.+++||+|+++...+.
T Consensus 21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg~~~ 100 (160)
T d1i0za1 21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQ 100 (160)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCSCCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecCCcc
Confidence 389999999999999999999986 7999999987764332 11 11 112233455789999999863221
Q ss_pred ---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 ---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
-++++. +++.+. .++.+++..|+-
T Consensus 101 ~~g~tR~~l~~~N~~i~~~i~---~~i~~~-~p~aiiivvtNP 139 (160)
T d1i0za1 101 QEGESRLNLVQRNVNVFKFII---PQIVKY-SPDCIIIVVSNP 139 (160)
T ss_dssp CTTCCGGGGHHHHHHHHHHHH---HHHHHH-CTTCEEEECSSS
T ss_pred ccCcchHHHHHHHHHHHHHHH---HHHHhc-CCCcEEEEeCCc
Confidence 233444 444444 366777766665
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.41 E-value=3.9e-07 Score=71.91 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=73.8
Q ss_pred eEEEEecChhhHH-HHHHHHhC-CCcEE-EEcCCcchhHHHHHC-CC-----cccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GA-----TVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~-----~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||||||+|.||.. +...+... +.+|. ++|+++++++.+.++ |+ ...+|.+++++ +.|+|++|+|...+.
T Consensus 35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~H~ 114 (221)
T d1h6da1 35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHA 114 (221)
T ss_dssp EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGHH
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhhhh
Confidence 7999999999974 55666654 56766 789999998887754 43 24578888875 478999999998877
Q ss_pred HHHHhccCccccccCCCcEE-EEc-CCCCHHHHHHHHHHHHhcCCcE
Q 022834 71 LSVVFDKGGVLEQICPGKGY-IDM-STVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~v-v~~-s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
+-+. . .+..|+.| +.- -+..+....++.+...+.++.+
T Consensus 115 ~~~~---~----al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~ 154 (221)
T d1h6da1 115 EFAI---R----AFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKL 154 (221)
T ss_dssp HHHH---H----HHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred hHHH---H----hhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence 6665 2 22344444 431 1345667777777666665544
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.41 E-value=2.6e-07 Score=67.82 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=48.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHHC--------C--CcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH--------G--ATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~--------g--~~~~~~~~~~~~~~dvvii~vp 65 (291)
.||+|||+|.+|..++..|...| .++.++|+++++++....+ + ..+..+..+.+++||+|+++..
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG 78 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLG 78 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecc
Confidence 48999999999999999999877 3799999998876533211 1 1222233355789999999865
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.39 E-value=3.8e-07 Score=66.69 Aligned_cols=91 Identities=10% Similarity=0.138 Sum_probs=61.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHH----------CCCcc--cCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA----------HGATV--GGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~----------~g~~~--~~~~~~~~~~~dvvii~vp~~ 67 (291)
.||+|||+|.+|..+|..|+.++. ++.++|+++++++.... ....+ ..+.++ ++++|+|+++...+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-~~~advvvitag~~ 80 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-TANSDVIVVTSGAP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-GTTCSEEEECCSCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH-hcCCCEEEEeeecc
Confidence 589999999999999999988775 89999998877654221 11222 344544 67999999998432
Q ss_pred H---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 A---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. .++++. +++.+.- ++.+++..|+-
T Consensus 81 ~~~~~~r~dl~~~N~~i~~~i~---~~i~k~~-p~aivivvtNP 120 (142)
T d1uxja1 81 RKPGMSREDLIKVNADITRACI---SQAAPLS-PNAVIIMVNNP 120 (142)
T ss_dssp ---------CHHHHHHHHHHHH---HHHGGGC-TTCEEEECSSS
T ss_pred CCcCcchhHHHhHHHHHHHHHH---HHHhccC-CCceEEEeCCc
Confidence 1 234444 4555543 56676665554
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.39 E-value=5.4e-07 Score=68.01 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=47.8
Q ss_pred CeEEEEecChhhHHHH--HHHHhC----CCcEEEEcCCcchhHHHHH--------CC----CcccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAIS--MNLLRN----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la--~~l~~~----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvvii 62 (291)
|||+|||+|++|..++ ..+... +.++.++|+++++++.... .+ +...++.++++++||+|++
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv~ 82 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVIN 82 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEE
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEee
Confidence 8999999999997643 334432 4589999999988764321 12 2345688899999999999
Q ss_pred ecC
Q 022834 63 MLA 65 (291)
Q Consensus 63 ~vp 65 (291)
+..
T Consensus 83 ~~~ 85 (171)
T d1obba1 83 TAM 85 (171)
T ss_dssp CCC
T ss_pred ecc
Confidence 864
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=98.35 E-value=9.4e-07 Score=65.59 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=60.6
Q ss_pred CeEEEEecChhhHH-HHHHHHhCC-CcEE-EEcCCcchh--HHHHHCCCcccCC-HHHHH-----hhCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLRNG-FKVT-VWNRTLSKC--DELVAHGATVGGS-PAEVI-----KKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~~g-~~V~-~~~r~~~~~--~~l~~~g~~~~~~-~~~~~-----~~~dvvii~vp~~~~ 69 (291)
+||||||+|.+|.. +...|.+.. .++. +.+|+++.. +...+.|+....+ .+++. .+.|+||+|+|...+
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h 84 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH 84 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence 48999999999985 556665543 4555 558876543 3344567776554 34333 357999999988777
Q ss_pred HHHHHhccCccccccCCCcEEEEcCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
.+... .....+.|..++|.|.
T Consensus 85 ~~~~~-----~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 85 VQNEA-----LLRQAKPGIRLIDLTP 105 (157)
T ss_dssp HHHHH-----HHHHHCTTCEEEECST
T ss_pred HHhHH-----HHHHHHcCCEEEEccc
Confidence 66443 2234568899999986
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.35 E-value=3.9e-07 Score=66.57 Aligned_cols=90 Identities=9% Similarity=0.236 Sum_probs=60.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHH----HHC----C---CcccCCHHHHHhhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL----VAH----G---ATVGGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l----~~~----g---~~~~~~~~~~~~~~dvvii~vp~~~ 68 (291)
||+|||+|.+|..++..|..+|. ++.++|+++++++.. ... + +....+. +.++++|+|+++...+.
T Consensus 3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~~ 81 (143)
T d1llda1 3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPRQ 81 (143)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCCC
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEeccccc
Confidence 89999999999999999998885 799999998776532 221 1 1123344 45789999999873321
Q ss_pred ---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 ---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
-++++. +++.+.- ++.+++..||-
T Consensus 82 ~~g~~R~dl~~~N~~i~~~i~---~~i~~~~-p~ai~ivvtNP 120 (143)
T d1llda1 82 KPGQSRLELVGATVNILKAIM---PNLVKVA-PNAIYMLITNP 120 (143)
T ss_dssp CTTCCHHHHHHHHHHHHHHHH---HHHHHHC-TTSEEEECCSS
T ss_pred CCCCchhhhhhhhHHHHHHHH---HHHHhhC-CCeEEEEeCCc
Confidence 233444 4455443 66677766654
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.32 E-value=4.3e-07 Score=67.47 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=61.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHH----HHC----CC---cccCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL----VAH----GA---TVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l----~~~----g~---~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
+||+|||+|.+|..+|..|...|. ++.++|+++++++.. .+. +. ....+. +.+.++|+|+++...+
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvitag~~ 98 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIITAGAR 98 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEECCSCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEecccc
Confidence 389999999999999999999885 799999998776532 221 11 112344 4457999999986332
Q ss_pred ---------------HHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 ---------------AAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ---------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.-++++. +++.+. .++.+++..||-
T Consensus 99 ~~~~~~R~dll~~N~~i~~~i~---~~i~~~-~p~~ivivvtNP 138 (159)
T d2ldxa1 99 MVSGQTRLDLLQRNVAIMKAIV---PGVIQN-SPDCKIIVVTNP 138 (159)
T ss_dssp CCTTTCSSCTTHHHHHHHHHHT---TTHHHH-STTCEEEECSSS
T ss_pred cCCCCCHHHHHHHHHHHHHHHH---HHHhcc-CCCeEEEEeCCc
Confidence 1234444 455544 467777777664
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.31 E-value=1.1e-06 Score=64.64 Aligned_cols=65 Identities=11% Similarity=0.234 Sum_probs=48.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------C--Ccc-cCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------G--ATV-GGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g--~~~-~~~~~~~~~~~dvvii~vp 65 (291)
+||+|||+|.+|..++..|...+. ++.++|+++++++....+ + ..+ ..+..+.++++|+|+++..
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag 80 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG 80 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecc
Confidence 599999999999999998888774 799999998876543221 1 122 1234456789999999974
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.30 E-value=1.5e-06 Score=63.41 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=62.4
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHC-C--------CcccCCHHHHHhhCCEEEEecCCH--
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH-G--------ATVGGSPAEVIKKCTITIGMLADP-- 67 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~-g--------~~~~~~~~~~~~~~dvvii~vp~~-- 67 (291)
||+|||+ |.+|..++..|...|. ++.++|.++.+.+.+--. . .....+..+.+++||+|+++...+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~ 81 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK 81 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence 8999995 9999999999998885 699999987655443211 1 111335567788999999986422
Q ss_pred -------------HHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 -------------AAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 -------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++. +.+.++ .++.+++..||-
T Consensus 82 ~g~sR~~ll~~N~~i~~~i~---~~i~~~-~p~~iiivvtNP 119 (144)
T d1mlda1 82 PGMTRDDLFNTNATIVATLT---AACAQH-CPDAMICIISNP 119 (144)
T ss_dssp TTCCGGGGHHHHHHHHHHHH---HHHHHH-CTTSEEEECSSC
T ss_pred CCCCcchHHHHHHHHHHHHH---HHHHhc-CCCeEEEEecCc
Confidence 1345555 555555 467777766665
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=3.4e-06 Score=61.55 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=58.8
Q ss_pred CeEEEEe-cChhhHHHHHHHHh-C--CCcEEEEcCCcchhHH----HHHCCC------cccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLR-N--GFKVTVWNRTLSKCDE----LVAHGA------TVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~-~--g~~V~~~~r~~~~~~~----l~~~g~------~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+||| +|.+|..++..|.. . ..++.++|..+ ..+. +.+... ...++..+.++++|+||++-..
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~ 79 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence 9999999 59999999998764 3 36899999864 3332 222111 1123344567899999998632
Q ss_pred H---------------HHHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 67 P---------------AAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 67 ~---------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
+ .-++++. +++.+.- ++.+++..||-.
T Consensus 80 ~~k~g~~R~dl~~~N~~i~~~v~---~~i~~~~-p~aivivvtNPv 121 (145)
T d2cmda1 80 RRKPGMDRSDLFNVNAGIVKNLV---QQVAKTC-PKACIGIITNPV 121 (145)
T ss_dssp CCCTTCCGGGGHHHHHHHHHHHH---HHHHHHC-TTSEEEECSSSH
T ss_pred cCCCCcchhhHHHHHHHHHHHHH---HHHHhhC-CCcEEEEccCCc
Confidence 2 1244455 5555544 667777766653
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=98.18 E-value=2.4e-06 Score=62.74 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=69.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
++.|+|+|.+|..+|..+...|-+|++++++|-++-+..-+|.++ .+.+++++.+|++|.++.....+. .+-.
T Consensus 25 ~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~vI~------~~h~ 97 (163)
T d1v8ba1 25 IVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVIK------LEHL 97 (163)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSBC------HHHH
T ss_pred EEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCcccc------HHHH
Confidence 789999999999999999999999999999986655555568777 588899999999999996643211 1223
Q ss_pred cccCCCcEEEEcCCCC
Q 022834 82 EQICPGKGYIDMSTVD 97 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~ 97 (291)
..++++.++.+.+...
T Consensus 98 ~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 98 LKMKNNAVVGNIGHFD 113 (163)
T ss_dssp TTCCTTCEEEECSSTT
T ss_pred HHhhCCeEEEeccccc
Confidence 4566888888776553
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=98.14 E-value=1.9e-06 Score=57.27 Aligned_cols=64 Identities=22% Similarity=0.236 Sum_probs=49.7
Q ss_pred CeEEEEecChhhH-HHHHHHHhCCCcEEEEcCCc-chhHHHHHCCCcccC-CHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRNGFKVTVWNRTL-SKCDELVAHGATVGG-SPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~g~~V~~~~r~~-~~~~~l~~~g~~~~~-~~~~~~~~~dvvii~v 64 (291)
|||-|||-|.+|. ++|..|.++|++|+++|+.+ +..+.|.+.|+++.. ...+-++++|+||...
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss 68 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP 68 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence 8999999999998 78999999999999999875 455678888887643 1222345788887653
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=98.12 E-value=3.8e-06 Score=62.84 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=46.5
Q ss_pred CeEEEEecChhhHHHH--HHHHhC-C---CcEEEEcCCcchhHHHHH--------CC----CcccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAIS--MNLLRN-G---FKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la--~~l~~~-g---~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvvii 62 (291)
+||+|||+|+.|.... ..+... . -++.++|.++++++.... .+ .....+..++++++|+||+
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vvi 83 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA 83 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEE
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEEE
Confidence 4899999999987633 334332 2 379999999998763222 12 2345688899999999999
Q ss_pred ecC
Q 022834 63 MLA 65 (291)
Q Consensus 63 ~vp 65 (291)
+..
T Consensus 84 tag 86 (167)
T d1u8xx1 84 HIR 86 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 974
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.10 E-value=6.7e-07 Score=66.35 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=68.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC---CCcc-cC---CHHHHHhhCCEEEEecCCHHH-HHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH---GATV-GG---SPAEVIKKCTITIGMLADPAA-ALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~---g~~~-~~---~~~~~~~~~dvvii~vp~~~~-~~~v 73 (291)
|+.|||+|..|..-++....-|-+|+++|.++++.+.+... .... .. ..++.++++|+||-++--+-. ...+
T Consensus 34 ~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~l 113 (168)
T d1pjca1 34 KVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPIL 113 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCC
T ss_pred EEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcccCee
Confidence 79999999999999999999999999999999998877654 2222 11 345667899999998721111 1111
Q ss_pred HhccCccccccCCCcEEEEcCCCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
+. ++.....++|.+|||++...
T Consensus 114 It--~~mv~~Mk~GSVIVDvaidq 135 (168)
T d1pjca1 114 VP--ASLVEQMRTGSVIVDVAVDQ 135 (168)
T ss_dssp BC--HHHHTTSCTTCEEEETTCTT
T ss_pred ec--HHHHhhcCCCcEEEEeecCC
Confidence 11 34456678999999998754
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=98.10 E-value=2.1e-06 Score=66.31 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=73.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHH-hhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.+|+|-|+|++|..++..|.+.|.+|+++|.+++........|....+ .++++ .+||+++-|--...-.++..
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~-~~~~~~~~~DI~iPcA~~~~I~~~~a----- 101 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVA-LEDVLSTPCDVFAPCAMGGVITTEVA----- 101 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECC-GGGGGGCCCSEEEECSCSCCBCHHHH-----
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccC-ccccccccceeeecccccccccHHHH-----
Confidence 379999999999999999999999999999999998888888877664 44544 47998887652222112222
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+.+ +-++|+...+. |.+.+...+.+.++|+.|+
T Consensus 102 --~~i-~ak~i~e~AN~-p~~~~~~~~~L~~rgI~~i 134 (201)
T d1c1da1 102 --RTL-DCSVVAGAANN-VIADEAASDILHARGILYA 134 (201)
T ss_dssp --HHC-CCSEECCSCTT-CBCSHHHHHHHHHTTCEEC
T ss_pred --hhh-hhheeeccCCC-CcchhhHHHHhcccceEEE
Confidence 223 23566655554 3233445567778887664
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.05 E-value=5.1e-06 Score=62.35 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=66.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCC-----------------------------HHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGS-----------------------------PAE 52 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~-----------------------------~~~ 52 (291)
|+.|||+|..|..-++....-|.+|+++|.++++.+++...+..+... ..+
T Consensus 31 ~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~~ 110 (183)
T d1l7da1 31 RVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLK 110 (183)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHHH
Confidence 789999999999999998899999999999999999988775433210 123
Q ss_pred HHhhCCEEEEecCCHHH-HHHHHhccCccccccCCCcEEEEcCCC
Q 022834 53 VIKKCTITIGMLADPAA-ALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 53 ~~~~~dvvii~vp~~~~-~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.+.++|+||.++--+-. ...++ .+++.+..++|.+|||++..
T Consensus 111 ~l~~aDlVI~talipG~~aP~li--t~~mv~~Mk~GSVIVDvaid 153 (183)
T d1l7da1 111 ELVKTDIAITTALIPGKPAPVLI--TEEMVTKMKPGSVIIDLAVE 153 (183)
T ss_dssp HHTTCSEEEECCCCTTSCCCCCS--CHHHHTTSCTTCEEEETTGG
T ss_pred HHHhhhhheeeeecCCcccceee--hHHHHHhcCCCcEEEEEeec
Confidence 35689999988622111 11111 03455667899999998854
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=4.4e-06 Score=62.90 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=71.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC-----CcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-----ATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-----~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
++|.|+|+|..+.+++..|.+.|.+|++++|+.++++.+.+.. +......+....++|+||-|+|-...- +..
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~-~~~- 96 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG-DIP- 96 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT-CCC-
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCccc-CCC-
Confidence 3799999999999999999999999999999999998887642 122222222235689999999875421 111
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
.--...++++.+++|+.-....+ .+.+...+.|..
T Consensus 97 --~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~ 131 (170)
T d1nyta1 97 --AIPSSLIHPGIYCYDMFYQKGKT--PFLAWCEQRGSK 131 (170)
T ss_dssp --CCCGGGCCTTCEEEESCCCSSCC--HHHHHHHHTTCC
T ss_pred --CCcHHHhccCcEEEEeecCCCCC--HHHHHHHHcCCC
Confidence 11123466788899976543222 133334455653
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.05 E-value=3.1e-06 Score=61.78 Aligned_cols=64 Identities=20% Similarity=0.337 Sum_probs=45.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC--cEEEEcCCcch--hHH----HHHC------CCcc---cCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSK--CDE----LVAH------GATV---GGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~--~V~~~~r~~~~--~~~----l~~~------g~~~---~~~~~~~~~~~dvvii 62 (291)
|||+|||+ |.+|..++..|+..+. ++.++|++++. ++. +.+. ...+ .++..+.+++||+|++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 99999996 9999999999999884 89999987632 222 2210 1111 1223456789999999
Q ss_pred ec
Q 022834 63 ML 64 (291)
Q Consensus 63 ~v 64 (291)
+.
T Consensus 81 tA 82 (145)
T d1hyea1 81 TS 82 (145)
T ss_dssp CC
T ss_pred ec
Confidence 85
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.02 E-value=5e-06 Score=69.07 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=69.6
Q ss_pred eEEEEecChhhHHHHHHHHh-CC-CcEEEEcCCcchhHHHHH----CCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVA----HGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~----~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
+++|||+|.++......|.. .. .+|.+|+|++++.+.+.+ .+..+..+..+.+.+||+|+.|+|.. +.++
T Consensus 127 ~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~---~P~~- 202 (320)
T d1omoa_ 127 VFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSR---KPVV- 202 (320)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCS---SCCB-
T ss_pred EEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCc---cccc-
Confidence 68999999999999999876 23 479999999999877654 46666777888889999999999653 2333
Q ss_pred ccCccccccCCCcEEEEcCCCCHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHE 99 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~ 99 (291)
+ ..++++|..|..+++..|.
T Consensus 203 --~--~~~l~~G~hv~~iGs~~p~ 222 (320)
T d1omoa_ 203 --K--AEWVEEGTHINAIGADGPG 222 (320)
T ss_dssp --C--GGGCCTTCEEEECSCCSTT
T ss_pred --c--hhhcCCCCeEeecCCcccc
Confidence 1 2357789998887776553
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.99 E-value=4.1e-06 Score=59.74 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=57.5
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEE-EcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTV-WNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~-~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+|+|+ |+||..+...+.+.||++.. ++++.. +.+.++|++|=.+ .|..+.+.+ +
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~-----------------~~~~~~DVvIDFS-~p~~~~~~l---~ 59 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-----------------EELDSPDVVIDFS-SPEALPKTV---D 59 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-----------------EECSCCSEEEECS-CGGGHHHHH---H
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH-----------------HHhccCCEEEEec-CHHHHHHHH---H
Confidence 89999996 99999999999999998764 455422 1235689988877 667777776 3
Q ss_pred ccccccCCCcEEEEcCCCC-HHHHHHHHHH
Q 022834 79 GVLEQICPGKGYIDMSTVD-HETSIKISRA 107 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~ 107 (291)
.. ++.+..+|.-||+. ....+.+.+.
T Consensus 60 ~~---~~~~~p~ViGTTG~~~~~~~~i~~~ 86 (128)
T d1vm6a3 60 LC---KKYRAGLVLGTTALKEEHLQMLREL 86 (128)
T ss_dssp HH---HHHTCEEEECCCSCCHHHHHHHHHH
T ss_pred HH---HhcCCCEEEEcCCCCHHHHHHHHHH
Confidence 22 23456677777774 4444555443
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.99 E-value=2.5e-06 Score=63.69 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=48.6
Q ss_pred CeEEEEecChhhHHHHHH-HH-hC----CCcEEEEcCCcchhHHHHHC---------CCcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMN-LL-RN----GFKVTVWNRTLSKCDELVAH---------GATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~-l~-~~----g~~V~~~~r~~~~~~~l~~~---------g~~~~~~~~~~~~~~dvvii~vp 65 (291)
|||+|||+|+.|..++.. +. .. ..++.++|+++++.+...+. ......+..+.+++||+|+++..
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 999999999999777754 22 22 35899999999887643321 13345677788899999999874
Q ss_pred C
Q 022834 66 D 66 (291)
Q Consensus 66 ~ 66 (291)
.
T Consensus 81 ~ 81 (162)
T d1up7a1 81 P 81 (162)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.98 E-value=1.3e-05 Score=60.03 Aligned_cols=66 Identities=8% Similarity=0.002 Sum_probs=44.8
Q ss_pred CeEEEEecChhhH--HHHHHHHhCC----CcEEEEcCCcch--hHHHH--------HCCC----cccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGK--AISMNLLRNG----FKVTVWNRTLSK--CDELV--------AHGA----TVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~--~la~~l~~~g----~~V~~~~r~~~~--~~~l~--------~~g~----~~~~~~~~~~~~~dvv 60 (291)
|||+|||+|+.|. .++..+.... -++.++|+++++ .+.+. +.+. ...++..+.++++|+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 7999999998774 4555555432 379999998754 33221 1222 2356777888999999
Q ss_pred EEecCC
Q 022834 61 IGMLAD 66 (291)
Q Consensus 61 ii~vp~ 66 (291)
+++...
T Consensus 82 v~ta~~ 87 (169)
T d1s6ya1 82 TTQFRV 87 (169)
T ss_dssp EECCCT
T ss_pred EEcccc
Confidence 999853
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.96 E-value=5e-06 Score=62.38 Aligned_cols=110 Identities=19% Similarity=0.174 Sum_probs=70.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHH--HHHHHhcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAA--ALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~--~~~v~~~~ 77 (291)
||.|+|+|.++.+++..|.+.|. +|++++|++++++.+.+. +.....+.. ..++|+||-|+|-... .++.-
T Consensus 19 ~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpiGm~~~~~~~~--- 93 (167)
T d1npya1 19 KVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD--- 93 (167)
T ss_dssp CEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS---
T ss_pred eEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheeccccCCcccccccc---
Confidence 79999999999999999999996 799999999999988764 433332222 2468999999974210 01000
Q ss_pred Ccc-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 78 GGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 78 ~~l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
-.+ ...++++.+++|+.-....+ . +.+...+.|..+++.
T Consensus 94 l~~~~~~~~~~~~v~D~vY~P~~T-~-ll~~A~~~G~~~i~G 133 (167)
T d1npya1 94 LAFPKAFIDNASVAFDVVAMPVET-P-FIRYAQARGKQTISG 133 (167)
T ss_dssp CSSCHHHHHHCSEEEECCCSSSSC-H-HHHHHHHTTCEEECH
T ss_pred ccccHhhcCCcceEEEEeeccCCC-H-HHHHHHHCCCeEEEC
Confidence 011 11244677888875443222 1 333445667666543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=5.1e-05 Score=56.78 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=63.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcc-----cCCHHHHHh--------hCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATV-----GGSPAEVIK--------KCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~--------~~dvvii~vp~~ 67 (291)
+|.|+|+|.+|...+..+...|. +|++.|+++++++..++.|... ..+..+..+ .+|++|-|++.+
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~ 108 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAE 108 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCH
T ss_pred EEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccCCc
Confidence 68999999999999999998998 6999999999999888877643 123333221 479999999886
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCC
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
..++..+ ..++++..++..+.
T Consensus 109 ~~~~~a~-------~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 109 ASIQAGI-------YATRSGGTLVLVGL 129 (171)
T ss_dssp HHHHHHH-------HHSCTTCEEEECSC
T ss_pred hhHHHHH-------HHhcCCCEEEEEec
Confidence 6665555 33445555555554
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=2.1e-06 Score=66.69 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=48.8
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-------cCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvvii~vp 65 (291)
+||.|+| .|.+|..++..|.++||+|+++.|++++.......++.+ ..+..++++++|+||.+++
T Consensus 4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g 76 (205)
T d1hdoa_ 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (205)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEec
Confidence 3899998 599999999999999999999999988865544334322 1233455677888877763
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=5e-05 Score=53.69 Aligned_cols=95 Identities=18% Similarity=0.186 Sum_probs=57.1
Q ss_pred ChhHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHcCCCH--HHHHHHHh----hc-CCCccccccc
Q 022834 164 GNGAKMKLVVNMIMGCM------------------MNTFSEGLVLAEKSGLDP--RTLLDVLD----LG-GIANPMFKGK 218 (291)
Q Consensus 164 ~~a~~~k~~~n~~~~~~------------------~~~~~E~~~~~~~~g~~~--~~~~~~~~----~~-~~~s~~~~~~ 218 (291)
..+.|.|++.|+..+.. ..++.|+..++++.|++. +...+.+. .. ...++|+++.
T Consensus 3 ~~~~W~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~~l~~E~~~va~a~g~~~~~~~~~~~~~~~~~~~~~~~sSM~qD~ 82 (124)
T d1ks9a1 3 RAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDI 82 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHHhCCCchHHHhCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccCCCCChHHHHH
Confidence 34567777777766553 346778999999988654 33333222 11 1222233221
Q ss_pred c-cccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 219 G-PTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 219 ~-~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
. .+..+-++. .+++++.|+++|+++|++++++++++...+
T Consensus 83 ~~gr~tEid~i-----------~G~vv~~a~~~gi~tP~~~~l~~lik~~E~ 123 (124)
T d1ks9a1 83 RALRHTEIDYI-----------NGFLLRRARAHGIAVPENTRLFEMVKRKES 123 (124)
T ss_dssp HTTCCCSGGGT-----------HHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HcCCcchHHHH-----------HHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Confidence 1 011111111 378999999999999999999999876543
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.91 E-value=3.6e-05 Score=60.97 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=67.6
Q ss_pred CeEEEEecChhhH----HHHHHHHh--CCCcEE-EEcCCcchhHHHHHC-C---CcccCCHHHHHh--hCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGK----AISMNLLR--NGFKVT-VWNRTLSKCDELVAH-G---ATVGGSPAEVIK--KCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~----~la~~l~~--~g~~V~-~~~r~~~~~~~l~~~-g---~~~~~~~~~~~~--~~dvvii~vp~~ 67 (291)
|||||||+|.+|. .....+.+ .++++. ++|+++++++.+.+. + ...+++.+++++ +.|+|++|+|..
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp~~ 96 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP 96 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCCCc
Confidence 4899999998554 34444544 356766 789999988877653 3 345679999875 478999999988
Q ss_pred HHHHHHHhccCccccc--cCCC-cEEEEcC-CCCHHHHHHHHHHHHhc
Q 022834 68 AAALSVVFDKGGVLEQ--ICPG-KGYIDMS-TVDHETSIKISRAITSK 111 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~--l~~~-~~vv~~s-~~~~~~~~~~~~~~~~~ 111 (291)
.+.+.+. ..+... ...+ .+++.-= .......+++.+...++
T Consensus 97 ~h~~~~~---~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~ 141 (237)
T d2nvwa1 97 EHYEVVK---NILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQR 141 (237)
T ss_dssp HHHHHHH---HHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred chhhHHH---HHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhc
Confidence 7776655 222211 1223 4555411 22445566665554443
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.88 E-value=8.1e-05 Score=55.52 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=62.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-------CCHHHH---H-----hhCCEEEEecCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-------GSPAEV---I-----KKCTITIGMLAD 66 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~---~-----~~~dvvii~vp~ 66 (291)
+|.|+|+|.+|...+..+...|.+|+++++++++.+.+++.|.... .+..+. + ..+|++|-|+..
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~ 108 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGN 108 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCC
T ss_pred EEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecCCC
Confidence 6889999999999999998899999999999999988888765321 122222 1 137999999977
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEcCC
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
+..++..+ ..++++..++..+.
T Consensus 109 ~~~~~~a~-------~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 109 EKCITIGI-------NITRTGGTLMLVGM 130 (170)
T ss_dssp HHHHHHHH-------HHSCTTCEEEECSC
T ss_pred hHHHHHHH-------HHHhcCCceEEEec
Confidence 65555554 23445555565543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.87 E-value=8.4e-06 Score=54.95 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=47.9
Q ss_pred CeEEEEecChhh-HHHHHHHHhCCCcEEEEcCC-cchhHHHHHCCCcccC-CHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLGIMG-KAISMNLLRNGFKVTVWNRT-LSKCDELVAHGATVGG-SPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG-~~la~~l~~~g~~V~~~~r~-~~~~~~l~~~g~~~~~-~~~~~~~~~dvvii~v 64 (291)
+||-|||.|..| +++|..|.+.||+|+++|+. ....+.+.+.|+.+.. ...+-+.+.|+||...
T Consensus 9 ~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~ 75 (96)
T d1p3da1 9 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS 75 (96)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred CEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence 479999999999 67799999999999999986 3455677777876533 2223356778777653
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.87 E-value=3.7e-05 Score=53.65 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=73.6
Q ss_pred CeEEEEec----ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~----G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
.+|+|||+ |..|..+.+.|.+.||+|+.++++.+.. .|.....++.++-...|++++++|. ..+.+++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~-~~~~~~l-- 73 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVA-- 73 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCH-HHHHHHH--
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeCH-HHHHHHH--
Confidence 36999995 7899999999999999999888765443 3888889999988889999999954 6677777
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
+++...- -..+++....-. +++.+.+.+.|+.++.
T Consensus 74 -~~~~~~g-~k~v~~~~g~~~----~~~~~~a~~~gi~vig 108 (116)
T d1y81a1 74 -KEAVEAG-FKKLWFQPGAES----EEIRRFLEKAGVEYSF 108 (116)
T ss_dssp -HHHHHTT-CCEEEECTTSCC----HHHHHHHHHHTCEEEC
T ss_pred -HHHHhcC-CceEEeccchhh----HHHHHHHHHcCCEEEc
Confidence 4444321 224444333222 3455666677887764
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.85 E-value=2.6e-06 Score=64.33 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=64.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||...+..|.+.. ..+.+++....+ ...........+.++++. +.|+|++|+|+..+.+-+.
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~~~~-- 83 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDYIR-- 83 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHHHH--
T ss_pred cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhcccccccccccc--
Confidence 48999999999999998887632 224444432211 111112223447888876 4688999999988765554
Q ss_pred cCccccccCCCc-EEEEc-CCCCHHHHHHHHHHHHhcCCcE
Q 022834 77 KGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 77 ~~~l~~~l~~~~-~vv~~-s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
.. +..+. +++.- -.......+++.+...+.+..+
T Consensus 84 --~a---l~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~ 119 (172)
T d1lc0a1 84 --QF---LQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVL 119 (172)
T ss_dssp --HH---HHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred --cc---cccchhhhcCCCccccHHHHHHHHHHHHHcCCeE
Confidence 22 22333 44441 1335667777777666666544
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.84 E-value=1.8e-05 Score=57.35 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=43.2
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCC--cEEEEcCCc--chhH----HHHH---C--CCcccCCHHHHHhhCCEEEEec
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGF--KVTVWNRTL--SKCD----ELVA---H--GATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~--~V~~~~r~~--~~~~----~l~~---~--g~~~~~~~~~~~~~~dvvii~v 64 (291)
||+||| +|.+|..++..|...+. ++.++|++. ++++ .+.+ . ...+.....+.+++||+|+++.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvita 78 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITA 78 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEec
Confidence 899999 69999999999999885 799999743 2222 1221 1 1222222234467999999985
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.83 E-value=8.1e-06 Score=67.93 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=68.3
Q ss_pred eEEEEecChhhHHHHHHHHh-CC-CcEEEEcCCcchhHHHHHC-----CC--cccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GA--TVGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~-----g~--~~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
+++|||+|..+...+..+.. .+ .+|.+|+|++++.+++.+. |. ..+++.++++++||+|++|++++ ....
T Consensus 130 ~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~-s~~P 208 (340)
T d1x7da_ 130 KMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-AYAT 208 (340)
T ss_dssp EEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-SEEE
T ss_pred eEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccC-CCCc
Confidence 68999999999999988765 34 4699999999988877642 43 34789999999999999998542 2223
Q ss_pred HHhccCccccccCCCcEEEEcCCCCH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
++ . ..++++|..|...+.-.|
T Consensus 209 v~---~--~~~l~pG~hI~aiGs~~p 229 (340)
T d1x7da_ 209 II---T--PDMLEPGMHLNAVGGDCP 229 (340)
T ss_dssp EE---C--GGGCCTTCEEEECSCCBT
T ss_pred cc---c--hhhcCCCCEEeecccchh
Confidence 33 1 235778888887766555
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=1e-05 Score=54.24 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=30.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
.||.|+|+|..|.+.++.|.+.|++|++||.++.
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 3799999999999999999999999999987543
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.79 E-value=8.4e-06 Score=60.21 Aligned_cols=92 Identities=12% Similarity=0.167 Sum_probs=57.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC-------cEEEE--cCCcchhHHHHH---C-------CCcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVW--NRTLSKCDELVA---H-------GATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~-------~V~~~--~r~~~~~~~l~~---~-------g~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+ |.+|..++..|+..++ ...++ +++.++.+.+.. . +....++..+.++++|+|
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV 84 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA 84 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence 69999997 9999999999998653 12333 334444433321 1 234456777889999999
Q ss_pred EEecCCH---------------HHHHHHHhccCccccccCCCcEEEEcCC
Q 022834 61 IGMLADP---------------AAALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 61 ii~vp~~---------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
+++-..+ ..++++. +.+.+..+++.+++..||
T Consensus 85 iitaG~~~~pg~~r~dl~~~N~~i~~~~~---~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 85 LLVGAAPRKAGMERRDLLQVNGKIFTEQG---RALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHH---HHHHHHSCTTCEEEECSS
T ss_pred EeecCcCCCCCCcHHHHHHHHHHHHHHHH---HHHHHhCCCCcEEEEecC
Confidence 9986311 1233444 445554445666666665
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=2.4e-05 Score=59.35 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=70.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHH---C-----CCc--c--cC---CHHHHHhhCCEEEEecC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA---H-----GAT--V--GG---SPAEVIKKCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~---~-----g~~--~--~~---~~~~~~~~~dvvii~vp 65 (291)
+|.|||+|.+|.+++..|.+.|. ++++++|++++.+++.. . ... . .. +..+.+.++|+||-|+|
T Consensus 20 ~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~Tp 99 (182)
T d1vi2a1 20 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTK 99 (182)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSS
T ss_pred EEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceeccccC
Confidence 78999999999999999999886 69999999887765432 1 111 1 11 23345678999999997
Q ss_pred CHHHHHHHHhcc-CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 66 DPAAALSVVFDK-GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 66 ~~~~~~~v~~~~-~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.... ...... ..-...++++.+++|+.-....+ .+.+...+.|..+++.-
T Consensus 100 ~G~~--~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T--~ll~~a~~~g~~~i~Gl 150 (182)
T d1vi2a1 100 VGMK--PLENESLVNDISLLHPGLLVTECVYNPHMT--KLLQQAQQAGCKTIDGY 150 (182)
T ss_dssp TTST--TSCSCCSCCCGGGSCTTCEEEECCCSSSSC--HHHHHHHTTTCEEECHH
T ss_pred Cccc--cccchhhhhHHHhhhcchhhHHhhcCcccc--HHHHHHHHCcCeEeccH
Confidence 5421 111000 01123466788999986442221 23334456677776543
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.76 E-value=4.6e-06 Score=60.89 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=54.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC---cEEEEcCCcchhHHHHHCC--CcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF---KVTVWNRTLSKCDELVAHG--ATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~---~V~~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+ |.+|..+.+.|.+++| ++.....+...-+.+...+ ....+...+...++|++|+|+|... ..+..
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~~~~ 81 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SRAHA 81 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcch-hhhhc
Confidence 89999988 9999999999987665 4655433222111111001 1111122234568999999997644 33333
Q ss_pred hccCccccccCCCcEEEEcCCC
Q 022834 75 FDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. ....++..|||.|..
T Consensus 82 ---~---~~~~~g~~VID~Ss~ 97 (144)
T d2hjsa1 82 ---E---RARAAGCSVIDLSGA 97 (144)
T ss_dssp ---H---HHHHTTCEEEETTCT
T ss_pred ---c---ccccCCceEEeechh
Confidence 2 234578899998876
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.75 E-value=2.5e-05 Score=56.74 Aligned_cols=91 Identities=14% Similarity=0.237 Sum_probs=52.0
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CC---cEEEEcCCc--chhHHHHHCCCcc-cCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GF---KVTVWNRTL--SKCDELVAHGATV-GGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~---~V~~~~r~~--~~~~~l~~~g~~~-~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
|||||||+ |..|..+.+.|.++ .| ++..+..+. .+.-.+...-... .....+..+++|++|+|+|.. ...+
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~-~s~~ 79 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGS-YTEK 79 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHH-HHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCch-HHHH
Confidence 99999977 99999999987754 34 344333221 1111111011111 112234567899999999764 3444
Q ss_pred HHhccCccccccCCCcEEEEcCCC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+. +.+... ..+..|||+|..
T Consensus 80 ~~---~~l~~~-g~~~~VIDlSsd 99 (147)
T d1mb4a1 80 VY---PALRQA-GWKGYWIDAAST 99 (147)
T ss_dssp HH---HHHHHT-TCCSEEEESSST
T ss_pred Hh---HHHHHc-CCceEEEeCCcc
Confidence 44 333322 133579999876
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.75 E-value=3.6e-05 Score=58.31 Aligned_cols=73 Identities=21% Similarity=0.092 Sum_probs=51.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc-----CCHHHHHh---------hCCEEEEecCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK---------KCTITIGMLAD 66 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~~---------~~dvvii~vp~ 66 (291)
+|.|+|+|.+|......+...|. +|++.++++++.+.+++.|...+ .+..+..+ .+|+||-|++.
T Consensus 31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~vG~ 110 (182)
T d1vj0a2 31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGD 110 (182)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSC
T ss_pred EEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeecCCc
Confidence 68899999999999999888997 79999999999988887775321 22222211 25777777755
Q ss_pred HHHHHHHH
Q 022834 67 PAAALSVV 74 (291)
Q Consensus 67 ~~~~~~v~ 74 (291)
+..++..+
T Consensus 111 ~~~~~~a~ 118 (182)
T d1vj0a2 111 SRALLEGS 118 (182)
T ss_dssp TTHHHHHH
T ss_pred hhHHHHHH
Confidence 44444443
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.71 E-value=7.5e-06 Score=61.58 Aligned_cols=93 Identities=20% Similarity=0.207 Sum_probs=60.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-----CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
+|.|+|+|.++.+++..|.+.+.+|++++|+.++++.+.+. .............++|++|-|+|-...-. ..
T Consensus 20 ~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~~~-~~-- 96 (171)
T d1p77a1 20 HVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGG-TA-- 96 (171)
T ss_dssp EEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC----------
T ss_pred EEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccccccc-cc--
Confidence 78999999999999999998888999999999999888763 11111111122457899999998654211 11
Q ss_pred cCccccccCCCcEEEEcCCCCH
Q 022834 77 KGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
......++++.+++|..=..|
T Consensus 97 -~~~~~~~~~~~~~~D~vy~~p 117 (171)
T d1p77a1 97 -SVDAEILKLGSAFYDMQYAKG 117 (171)
T ss_dssp -CCCHHHHHHCSCEEESCCCTT
T ss_pred -chhhhhhcccceeeeeeccCc
Confidence 111223445677777654333
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.65 E-value=0.0001 Score=53.05 Aligned_cols=102 Identities=14% Similarity=0.183 Sum_probs=73.6
Q ss_pred eEEEEec----ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~----G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
+|+|||+ +..|..+...|.+.||+|+.+++..+.. .|..+..++.++-...|++++++ .+..+.+++
T Consensus 21 sIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~v-p~~~~~~~~--- 91 (139)
T d2d59a1 21 KIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFV-KPKLTMEYV--- 91 (139)
T ss_dssp EEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECS-CHHHHHHHH---
T ss_pred eEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEe-CHHHHHHHH---
Confidence 6999996 5799999999999999999888764333 27888899999888899999999 557788888
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
+++... ....+++..+... ++..+.+.+.|+.++.
T Consensus 92 ~e~~~~-g~k~v~~~~G~~~----ee~~~~a~~~gi~vig 126 (139)
T d2d59a1 92 EQAIKK-GAKVVWFQYNTYN----REASKKADEAGLIIVA 126 (139)
T ss_dssp HHHHHH-TCSEEEECTTCCC----HHHHHHHHHTTCEEEE
T ss_pred HHHHHh-CCCEEEEeccccC----HHHHHHHHHCCCEEEc
Confidence 555543 2333444333333 3344556677887764
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.65 E-value=0.00017 Score=54.13 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=45.1
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEE-cCCcchhHH-HHH-----------------CCCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVW-NRTLSKCDE-LVA-----------------HGATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~-~r~~~~~~~-l~~-----------------~g~~~~~~~~~~~~~~dvvi 61 (291)
||||.|+|++|..+.+.+.++. .+|..+ |+++..... +.. .+..+..+..+...++|+|+
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi 82 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence 8999999999999999999764 566654 555443222 222 23344455666666777777
Q ss_pred EecCCHHH
Q 022834 62 GMLADPAA 69 (291)
Q Consensus 62 i~vp~~~~ 69 (291)
.|+|....
T Consensus 83 ecTG~f~~ 90 (178)
T d1b7go1 83 DTTPNGVG 90 (178)
T ss_dssp ECCSTTHH
T ss_pred ECCCCcCC
Confidence 77776443
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.63 E-value=2.8e-05 Score=57.28 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=45.9
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCCcch--hHHHH----HC------CCcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--CDELV----AH------GATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~~--~~~l~----~~------g~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+ |.+|..++..|++.+. ++.++|.+... ++.+. .. ......+..+.++++|+|
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV 83 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA 83 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence 79999995 9999999999986431 46777765433 33322 11 133456778889999999
Q ss_pred EEecC
Q 022834 61 IGMLA 65 (291)
Q Consensus 61 ii~vp 65 (291)
+++-.
T Consensus 84 Vitag 88 (154)
T d5mdha1 84 ILVGS 88 (154)
T ss_dssp EECCS
T ss_pred EEecc
Confidence 99863
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=2.7e-05 Score=57.74 Aligned_cols=98 Identities=23% Similarity=0.230 Sum_probs=63.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEE-EEcCCcchh-H----H---HHHCCCcccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKC-D----E---LVAHGATVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~-~~~r~~~~~-~----~---l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|+|+ |+||..+++.+.+. ++++. .++|..... . . ....++.+.++.++..+.+|++|=.+ .|..
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs-~p~~ 83 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT-RPEG 83 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS-CHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec-cHHH
Confidence 69999996 99999999998775 56654 456533211 0 0 11124566778888888999998887 7677
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCH-HHHHHHH
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDH-ETSIKIS 105 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~-~~~~~~~ 105 (291)
+.+.+ +.. .+.+..+|.-||+.. ...+.+.
T Consensus 84 ~~~~~---~~a---~~~~~~~ViGTTG~~~~~~~~i~ 114 (162)
T d1diha1 84 TLNHL---AFC---RQHGKGMVIGTTGFDEAGKQAIR 114 (162)
T ss_dssp HHHHH---HHH---HHTTCEEEECCCCCCHHHHHHHH
T ss_pred HHHHH---HHH---HhccceeEEecCCCcHHHHHHHH
Confidence 77766 322 334566676677754 3344443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.62 E-value=7.5e-05 Score=56.07 Aligned_cols=86 Identities=15% Similarity=0.083 Sum_probs=59.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc-----CCHHHHHh------hCCEEEEecCCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK------KCTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~~------~~dvvii~vp~~~~ 69 (291)
+|.|+|+|.+|...+..+...|. +|++.|+++++.+.+.+.|+..+ .+..+.+. ..|++|.|++.+..
T Consensus 30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~ 109 (174)
T d1jqba2 30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSET 109 (174)
T ss_dssp CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCTTH
T ss_pred EEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCCHHH
Confidence 68999999999999998888886 69999999999888877775321 12222221 27888988876555
Q ss_pred HHHHHhccCccccccCCCcEEEEcC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s 94 (291)
++..+ ..++++..++..+
T Consensus 110 ~~~a~-------~~~~~~G~iv~~G 127 (174)
T d1jqba2 110 LSQAV-------KMVKPGGIISNIN 127 (174)
T ss_dssp HHHHH-------HHEEEEEEEEECC
T ss_pred HHHHH-------HHHhcCCEEEEEe
Confidence 55554 2234555555544
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.61 E-value=0.00012 Score=54.82 Aligned_cols=86 Identities=23% Similarity=0.331 Sum_probs=55.5
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC-CcEEEE-cCCcchhHHHHH---C--C-Ccc-cCCHHHHHhhCCEEEEecCCHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NRTLSKCDELVA---H--G-ATV-GGSPAEVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g-~~V~~~-~r~~~~~~~l~~---~--g-~~~-~~~~~~~~~~~dvvii~vp~~~~~ 70 (291)
|||+|+|+ |..|.-+.+.|.++- +++... .++ ..-+.+.+ . + ... ..+.++..+++|++|+|+|.....
T Consensus 2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~-~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~ 80 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRT-YAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASY 80 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECST-TTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHH
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccc-cCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHH
Confidence 59999987 999999999999864 355544 332 11122211 1 1 111 235666777899999999886543
Q ss_pred HHHHhccCccccccCCCcEEEEcCCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+.. .. . ++..|||+|..
T Consensus 81 -~~~---~~----~-~~~~VIDlSad 97 (176)
T d1vkna1 81 -DLV---RE----L-KGVKIIDLGAD 97 (176)
T ss_dssp -HHH---TT----C-CSCEEEESSST
T ss_pred -HHH---Hh----h-ccceEEecCcc
Confidence 333 22 2 56789999986
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.59 E-value=1.8e-05 Score=59.79 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=69.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC-----Cc-----ccCCHHHHHhhCCEEEEecCCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-----AT-----VGGSPAEVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-----~~-----~~~~~~~~~~~~dvvii~vp~~~~~ 70 (291)
.+|.|||+|.++.+++..|.+.| +|++++|+.++++.+.+.- .. ...+......++|++|-|+|-...-
T Consensus 19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g~~~ 97 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYP 97 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTT
T ss_pred CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcccccc
Confidence 37899999999999999998776 8999999999988876421 11 1123333445789999999764321
Q ss_pred HHHHhccCcc-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 71 LSVVFDKGGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 71 ~~v~~~~~~l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
..-. . ..+ ...+.++.++.|+.-....+ .+.+...+.|..+++.
T Consensus 98 ~~~~-~-~~~~~~~~~~~~~v~D~~y~p~~T--~l~~~a~~~G~~~i~G 142 (177)
T d1nvta1 98 NIDV-E-PIVKAEKLREDMVVMDLIYNPLET--VLLKEAKKVNAKTING 142 (177)
T ss_dssp CCSS-C-CSSCSTTCCSSSEEEECCCSSSSC--HHHHHHHTTTCEEECT
T ss_pred cccc-c-chhhhhccCcccceeeecCCcHhH--HHHHHHHHCCCcccCC
Confidence 1000 0 001 12345677888875443222 2333445667766643
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.58 E-value=5.8e-05 Score=53.65 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=58.2
Q ss_pred eEEEEec----ChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGL----GIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~----G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
+|+|||+ |.+|..+.++|.+.| ++|+.++++.+.. .|.+.+.|+.|+-...|++++++| +..+.+++
T Consensus 10 sIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~~-- 81 (129)
T d2csua1 10 GIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDTL-- 81 (129)
T ss_dssp EEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSC-HHHHHHHH--
T ss_pred eEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecC-hHHhHHHH--
Confidence 6999997 899999999998766 6899888765443 388889999998888999999995 46777787
Q ss_pred cCcccc
Q 022834 77 KGGVLE 82 (291)
Q Consensus 77 ~~~l~~ 82 (291)
+++.+
T Consensus 82 -~~~~~ 86 (129)
T d2csua1 82 -IQCGE 86 (129)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 55554
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=8.7e-05 Score=54.67 Aligned_cols=73 Identities=22% Similarity=0.259 Sum_probs=57.9
Q ss_pred CeEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
++|.|||-+. +|..++..|.+.|..|++++... .+..+..+++|++|.++.++..++
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~p~~i~-------- 95 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPGFIP-------- 95 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTTCBC--------
T ss_pred ceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccCccccc--------
Confidence 3799999987 89999999999999999987642 356677889999999997754221
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
..+++++.++||....
T Consensus 96 -~~~vk~g~vvIDvGi~ 111 (166)
T d1b0aa1 96 -GDWIKEGAIVIDVGIN 111 (166)
T ss_dssp -TTTSCTTCEEEECCCE
T ss_pred -ccccCCCcEEEecCce
Confidence 2356799999998654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=0.0003 Score=51.40 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=52.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhH----HHHHCCCccc----CCHHHH----HhhCCEEEEecCCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD----ELVAHGATVG----GSPAEV----IKKCTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~----~l~~~g~~~~----~~~~~~----~~~~dvvii~vp~~~~ 69 (291)
+|-|+|+|.+|..++..|.+.|++|++++.++++.. .+...|..+. .+.+-+ ++++|.++++++++..
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~ 84 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD 84 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence 488999999999999999999999999999886543 3333455432 222211 3468999999987654
Q ss_pred HHHHH
Q 022834 70 ALSVV 74 (291)
Q Consensus 70 ~~~v~ 74 (291)
...++
T Consensus 85 n~~~~ 89 (153)
T d1id1a_ 85 NAFVV 89 (153)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.00017 Score=53.50 Aligned_cols=74 Identities=23% Similarity=0.170 Sum_probs=58.9
Q ss_pred CeEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.+|.|||-+. +|..++..|.+.|..|++++... .+..+..+++|+++.+++.+.-++
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t--------------~~l~~~~~~aDivi~a~G~~~~i~-------- 97 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQPEMVK-------- 97 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCCTTCBC--------
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEeccc--------------ccHHHHHhhccchhhccccccccc--------
Confidence 3789999976 89999999999999999998753 355667889999999998754321
Q ss_pred cccccCCCcEEEEcCCCC
Q 022834 80 VLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~ 97 (291)
..+++++.+|+|.....
T Consensus 98 -~~~vk~g~iviDvgi~~ 114 (170)
T d1a4ia1 98 -GEWIKPGAIVIDCGINY 114 (170)
T ss_dssp -GGGSCTTCEEEECCCBC
T ss_pred -cccccCCCeEeccCccc
Confidence 23577999999987653
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.43 E-value=0.00019 Score=53.49 Aligned_cols=34 Identities=18% Similarity=0.436 Sum_probs=26.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEE-EEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVT-VWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~-~~~r~~~ 34 (291)
|||||.|+|++|..+.+.+.... .+|. +.|.++.
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~ 38 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPD 38 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCS
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCCh
Confidence 48999999999999999998654 5554 4466543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=97.42 E-value=0.00022 Score=50.50 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=53.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-C--CHHHHH-----hhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-G--SPAEVI-----KKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-~--~~~~~~-----~~~dvvii~vp~~~~~~~v 73 (291)
.|-|+|+|.+|..++..| +|++|.+.+.++++.+.+...|..+. . +..+.+ .+|+.++++++++.....+
T Consensus 2 HivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~ 79 (129)
T d2fy8a1 2 HVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHC 79 (129)
T ss_dssp CEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHHH
Confidence 578999999999999998 46789999999999999888876542 1 122333 4689999999776654444
Q ss_pred H
Q 022834 74 V 74 (291)
Q Consensus 74 ~ 74 (291)
+
T Consensus 80 ~ 80 (129)
T d2fy8a1 80 I 80 (129)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.41 E-value=7e-05 Score=58.55 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=72.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcccCCHHHH-HhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEV-IKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~-~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
++|.|-|.|++|..++..|.+.|.+|++.|.++...+.+... |.... +++++ -.+||+++-|--...-.++.+
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA~~~~I~~~~~---- 114 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGAVLNDFTI---- 114 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSCCBSTTHH----
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEecccccccccChHHh----
Confidence 378999999999999999999999999999998888777654 65554 44444 457999988862211111112
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+.+ +-++|+...+..|.+. +..+.+.++|+.|+
T Consensus 115 ---~~l-~ak~Ive~ANn~~t~~-ea~~~L~~rGI~~i 147 (230)
T d1leha1 115 ---PQL-KAKVIAGSADNQLKDP-RHGKYLHELGIVYA 147 (230)
T ss_dssp ---HHC-CCSEECCSCSCCBSSH-HHHHHHHHHTCEEC
T ss_pred ---hcc-CccEEEecccCCCCCc-hHHHHHHhhCcEEE
Confidence 223 2357777665655333 34566778887664
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=0.00015 Score=53.92 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=60.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc---CCHHHH---HhhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG---GSPAEV---IKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~---~~~~~~---~~~~dvvii~vp~~~~~~~v~~ 75 (291)
+|.|+|+|.+|...+..+...|.++++.++++++.+.+++.|...+ .+.... .+..|++|.|++.+..+...+
T Consensus 33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~- 111 (168)
T d1uufa2 33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFT- 111 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHHH-
T ss_pred EEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHHHHH-
Confidence 6899999999999998888899999999999998887777775422 222222 235899999997655555555
Q ss_pred ccCccccccCCCcEEEEcC
Q 022834 76 DKGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s 94 (291)
+ .+.++..++..+
T Consensus 112 --~----~l~~~G~iv~~G 124 (168)
T d1uufa2 112 --T----LLKRDGTMTLVG 124 (168)
T ss_dssp --T----TEEEEEEEEECC
T ss_pred --H----HHhcCCEEEEec
Confidence 2 334555555544
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=97.38 E-value=0.00015 Score=51.97 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=74.6
Q ss_pred eEEEEec----ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~----G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
+|+|||+ +..|......|.+.||++..+..++...+ + .|.....++.++-...|++++++| +..+.+++
T Consensus 15 sIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~-i--~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v--- 87 (136)
T d1iuka_ 15 TIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE-L--FGEEAVASLLDLKEPVDILDVFRP-PSALMDHL--- 87 (136)
T ss_dssp EEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE-E--TTEECBSSGGGCCSCCSEEEECSC-HHHHTTTH---
T ss_pred eEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce-e--eceecccchhhccCCCceEEEecc-HHHHHHHH---
Confidence 6999997 78999999999999999999987643111 1 377788899888778899999995 57777777
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
+++... ....+++....-. +++.+...+.|+.++.
T Consensus 88 ~~~~~~-g~k~i~~q~G~~~----~e~~~~a~~~Gi~vV~ 122 (136)
T d1iuka_ 88 PEVLAL-RPGLVWLQSGIRH----PEFEKALKEAGIPVVA 122 (136)
T ss_dssp HHHHHH-CCSCEEECTTCCC----HHHHHHHHHTTCCEEE
T ss_pred HHHHhh-CCCeEEEecCccC----HHHHHHHHHcCCEEEc
Confidence 555433 2344555333222 3456667788888874
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.33 E-value=0.00027 Score=52.81 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=53.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCc-EEEEcCCcchhHHHHHCCCcc-----cCCHHHHHh-----hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGATV-----GGSPAEVIK-----KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~-----~~dvvii~vp~~~~~ 70 (291)
+|.|+|+|.+|...+..+...|.+ |.+.++++++.+.+++.|... ..+..+.++ ..|++|.|+..+..+
T Consensus 31 ~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~~~ 110 (174)
T d1f8fa2 31 SFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEIL 110 (174)
T ss_dssp EEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHH
T ss_pred EEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHHHH
Confidence 689999999999999998888875 556789998988888777532 123333332 268899998776655
Q ss_pred HHHH
Q 022834 71 LSVV 74 (291)
Q Consensus 71 ~~v~ 74 (291)
+..+
T Consensus 111 ~~~~ 114 (174)
T d1f8fa2 111 KQGV 114 (174)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.32 E-value=0.00024 Score=52.64 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=52.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-----CCHHHHH----hhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEVI----KKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~----~~~dvvii~vp~~~~~~~ 72 (291)
+|.|+|+|.+|...+..+...|.+|++.++++++.+.+++.|.... .+..+.+ ...+.+++++..+..++.
T Consensus 30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~ 109 (166)
T d1llua2 30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQ 109 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSCHHHHHH
T ss_pred EEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccccchHHHH
Confidence 6899999999999999888899999999999999988888775421 1222222 124556666656655555
Q ss_pred HH
Q 022834 73 VV 74 (291)
Q Consensus 73 v~ 74 (291)
.+
T Consensus 110 ~~ 111 (166)
T d1llua2 110 AI 111 (166)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.28 E-value=0.00036 Score=51.61 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=39.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT 45 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~ 45 (291)
+|.|+|+|.+|...+..+...|.+|++.++++++.+.+++.|..
T Consensus 30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~ 73 (168)
T d1rjwa2 30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD 73 (168)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS
T ss_pred EEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc
Confidence 68999999999999888888999999999999999888887754
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.27 E-value=0.00069 Score=46.65 Aligned_cols=72 Identities=18% Similarity=0.157 Sum_probs=48.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch-hHHHHHC-CCccc---CCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAH-GATVG---GSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~-g~~~~---~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
+|.|||.|.+|..-++.|.+.|.+|++++..... ...+.+. ++... .+. +.+.++++|+.|+.+...-..+.
T Consensus 14 ~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~-~dl~~~~lv~~at~d~~~n~~i~ 90 (113)
T d1pjqa1 14 DCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE-TLLDSCWLAIAATDDDTVNQRVS 90 (113)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCG-GGGTTCSEEEECCSCHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCH-HHhCCCcEEeecCCCHHHHHHHH
Confidence 7999999999999999999999999999765432 2333333 33221 222 23567888888885544333443
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00032 Score=50.77 Aligned_cols=90 Identities=16% Similarity=0.239 Sum_probs=51.7
Q ss_pred eEEEEec-ChhhHHHHHHHHhC-CC---cEEEEcCCcchhHH--HHHCCCccc-CCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRN-GF---KVTVWNRTLSKCDE--LVAHGATVG-GSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~-g~---~V~~~~r~~~~~~~--l~~~g~~~~-~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
||||||+ |.+|..+.+.|.++ .| +++.+..+...-.. ......... ....+...++|++|+|+|... ..+.
T Consensus 3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~-s~~~ 81 (146)
T d1t4ba1 3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDY-TNEI 81 (146)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHH-HHHH
T ss_pred EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchH-HHHh
Confidence 7999988 99999999877654 34 35555443222111 111112221 122235678999999996643 3444
Q ss_pred HhccCccccccCCCcEEEEcCCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. +.+... ..+.+|||.|+.
T Consensus 82 ~---~~~~~~-g~~~~VID~Ss~ 100 (146)
T d1t4ba1 82 Y---PKLRES-GWQGYWIDAASS 100 (146)
T ss_dssp H---HHHHHT-TCCCEEEECSST
T ss_pred h---HHHHhc-CCCeecccCCcc
Confidence 3 333321 234578998875
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=97.21 E-value=0.001 Score=49.37 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=42.9
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEE-cCCcch-hHHHHHC------------------CCcccCCHHHHHhhCCEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVW-NRTLSK-CDELVAH------------------GATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~-~r~~~~-~~~l~~~------------------g~~~~~~~~~~~~~~dvv 60 (291)
||||-|+|++|..+.+.+...+ .+|... ++++.. ...+... +..+..+..++.+++|+|
T Consensus 3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDvV 82 (171)
T d1cf2o1 3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV 82 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE
T ss_pred EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCEE
Confidence 7999999999999999988765 555544 555432 1222222 223333445555677777
Q ss_pred EEecCCHHH
Q 022834 61 IGMLADPAA 69 (291)
Q Consensus 61 ii~vp~~~~ 69 (291)
+.|+|....
T Consensus 83 iEcTG~f~~ 91 (171)
T d1cf2o1 83 IDCTPEGIG 91 (171)
T ss_dssp EECCSTTHH
T ss_pred EEccCCCCC
Confidence 777776443
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.19 E-value=0.0017 Score=45.99 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=60.4
Q ss_pred eEEEEe-cChhhHHHHHHHHh-CCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHH-hhCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLG-LGIMGKAISMNLLR-NGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~-~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
||+|+| .|+||..++..+.+ .++++. .+|+.. +..... .++|++|=.+ .|..+.+.+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---------------~~~~~~~~~~DvvIDFS-~p~~~~~~~--- 61 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---------------PLSLLTDGNTEVVIDFT-HPDVVMGNL--- 61 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---------------CTHHHHTTTCSEEEECC-CTTTHHHHH---
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---------------chhhhccccCCEEEEcc-cHHHHHHHH---
Confidence 799999 59999999998765 456655 446531 222222 4689999888 666666666
Q ss_pred CccccccCCCcEEEEcCCCC-HHHHHHHHHHHH-hcCCcEEEcc
Q 022834 78 GGVLEQICPGKGYIDMSTVD-HETSIKISRAIT-SKGGHFLEAP 119 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~-~~~~~~~~~~ 119 (291)
+.+ ++.+..+|.-||+. +...+.+.+... ...+.++-+|
T Consensus 62 ~~~---~~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~ap 102 (135)
T d1yl7a1 62 EFL---IDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAP 102 (135)
T ss_dssp HHH---HHTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECS
T ss_pred HHH---HhcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcC
Confidence 322 33556667677775 556666666432 3344455444
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.19 E-value=0.0005 Score=55.62 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=66.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCcccccccccccccCCCCCCcccc-----
Q 022834 164 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPTMLQSNYAPAFPLK----- 234 (291)
Q Consensus 164 ~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~----- 234 (291)
|++..+|+++|.+...++++++|+..++++ .|++.+++.++.. .+...+++++.....+...+......++
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~~~~~~ld~I~d~ 80 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDS 80 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCcCcchhhhhcc
Confidence 678999999999999999999999999987 5899988888776 3545556655443333222211000000
Q ss_pred -cHHHHHHHHHHHHhhcCCCchHHHHH
Q 022834 235 -HQQKDMRLALALGDENAVSMPIAAAA 260 (291)
Q Consensus 235 -~~~~d~~~~~~~a~~~g~~~p~~~~~ 260 (291)
..-..-...+..|-+.|+|+|++.++
T Consensus 81 a~~kGTG~Wt~~~Al~lgvp~p~I~~A 107 (297)
T d2pgda1 81 AGQKGTGKWTAISALEYGVPVTLIGEA 107 (297)
T ss_dssp CCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred ccCCCchHHHHHHHHHcCCCchHHHHH
Confidence 00111356788888999999998774
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=97.19 E-value=0.00014 Score=58.77 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=31.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|||+|||+|.-|...|..|+++|++|+++++++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 899999999999999999999999999999864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.19 E-value=0.0012 Score=49.35 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=55.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc------CC-HHHHH-----hhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG------GS-PAEVI-----KKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~------~~-~~~~~-----~~~dvvii~vp~~~ 68 (291)
.|.|+|+|.+|...+..+...|. +|++.|+++++.+..++.|...+ ++ ..+.. ...|++|.++..+.
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~ 111 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLE 111 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSCCHH
T ss_pred EEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCCchH
Confidence 58999999999999999999995 79999999999998888776532 11 12111 24899999997766
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
..+..+
T Consensus 112 ~~~~a~ 117 (176)
T d1d1ta2 112 TMIDAL 117 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.17 E-value=0.00012 Score=54.60 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=58.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-C--CHHHH----HhhCCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-G--SPAEV----IKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-~--~~~~~----~~~~dvvii~vp~~~~~~~v~ 74 (291)
+|.|+|+|.+|...+..+...|.+|+++++++++.+.+++.|+..+ + +..+. .+..|+++.|+...... .+
T Consensus 30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~--~~ 107 (168)
T d1piwa2 30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI--DF 107 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC--CT
T ss_pred EEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc--hH
Confidence 6899999999999888877889999999999999998888775421 1 11112 23468888887543211 12
Q ss_pred hccCccccccCCCcEEEEcC
Q 022834 75 FDKGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s 94 (291)
+.....++++..++..+
T Consensus 108 ---~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 108 ---NIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp ---TTGGGGEEEEEEEEECC
T ss_pred ---HHHHHHhhccceEEEec
Confidence 23334455555555554
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.13 E-value=0.0014 Score=48.84 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=55.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcccCC-------HHHHH-----hhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGS-------PAEVI-----KKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~-------~~~~~-----~~~dvvii~vp~~~ 68 (291)
+|.|+|+|.+|...+..+...|. .|++.++++++.+..++.|...+.+ ..... ..+|++|.|+..+.
T Consensus 31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~~ 110 (174)
T d1e3ia2 31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQ 110 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHH
T ss_pred EEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecccch
Confidence 68999999999999999999997 5788899999998888887643211 12222 23799999998876
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
.++..+
T Consensus 111 ~~~~a~ 116 (174)
T d1e3ia2 111 TLKAAV 116 (174)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=97.12 E-value=0.00027 Score=53.69 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=35.0
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
+|.|.| .|.+|..++..|++.|.+|++.+|++++.+.+.+
T Consensus 25 ~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~ 65 (191)
T d1luaa1 25 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 65 (191)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHH
Confidence 566777 6999999999999999999999999988876654
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.06 E-value=0.00087 Score=49.97 Aligned_cols=91 Identities=11% Similarity=0.150 Sum_probs=58.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCC---C----cEEEEcCCcc--hhHHHH---HC-------CCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNG---F----KVTVWNRTLS--KCDELV---AH-------GATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g---~----~V~~~~r~~~--~~~~l~---~~-------g~~~~~~~~~~~~~~dvvi 61 (291)
||+|+|+ |.+|..++..|++.. . ++.++|.... .++.+. .+ .....++..+.++++|+||
T Consensus 26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDvVv 105 (175)
T d7mdha1 26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWAL 105 (175)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEEE
T ss_pred EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCceEE
Confidence 7999996 999999999998743 2 4667777543 223222 11 2345677888899999999
Q ss_pred EecCCH---------------HHHHHHHhccCccccccCCCcEEEEcCC
Q 022834 62 GMLADP---------------AAALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 62 i~vp~~---------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
++-..+ .-++++. +.+.++.+++..|+..++
T Consensus 106 i~ag~~rkpg~tR~Dll~~N~~I~k~~~---~~i~~~a~~~~~vlvv~N 151 (175)
T d7mdha1 106 LIGAKPRGPGMERAALLDINGQIFADQG---KALNAVASKNVKVLVVGN 151 (175)
T ss_dssp ECCCCCCCTTCCHHHHHHHHHHHHHHHH---HHHHHHSCTTCEEEECSS
T ss_pred EeeccCCCCCCcHHHHHHHHHHHHHHHH---HHHHhhCCCCcEEEEecC
Confidence 986322 1234444 455555545666665655
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.06 E-value=0.00027 Score=53.11 Aligned_cols=89 Identities=12% Similarity=0.127 Sum_probs=54.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEE-EEcCCcc--hhHHHHH---C--C---C--cccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLS--KCDELVA---H--G---A--TVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~-~~~r~~~--~~~~l~~---~--g---~--~~~~~~~~~~~~~dvvii~vp 65 (291)
|||+|+|+ |..|..|.+.|.++ .+++. +..++.+ .-+.+.. . + . ....+......++|++|.|+|
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp 81 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA 81 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence 59999995 99999999999987 46664 3332211 1111111 0 1 1 112233444567899999997
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
..... +.. . .....+..++|+|..
T Consensus 82 ~~~s~-~~~---~---~~~~~~~~vIDlSad 105 (179)
T d2g17a1 82 HEVSH-DLA---P---QFLQAGCVVFDLSGA 105 (179)
T ss_dssp HHHHH-HHH---H---HHHHTTCEEEECSST
T ss_pred chhHH-HHh---h---hhhhcCceeeccccc
Confidence 75433 333 1 224477899999976
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.03 E-value=0.00028 Score=55.99 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=31.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+||.|||+|.-|...|..|+++|++|++++++++
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 5899999999999999999999999999998754
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.02 E-value=0.00072 Score=54.78 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=64.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh---cC-CCcccccccccccccCCCCCCccccc----
Q 022834 164 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL---GG-IANPMFKGKGPTMLQSNYAPAFPLKH---- 235 (291)
Q Consensus 164 ~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~---~~-~~s~~~~~~~~~~~~~~~~~~~~~~~---- 235 (291)
|+++.+|+++|.+...++++++|+..+.+..|.+.+++.++... +. ..|++++-....+...+-. +.++-.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~-g~~l~d~I~d 79 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKD-GSYLTEHVMD 79 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTT-SSBGGGGBCC
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCC-CchhHHHhcc
Confidence 67899999999999999999999999999999999888877753 33 3455444332222222211 111110
Q ss_pred ---HHHHHHHHHHHHhhcCCCchHHHHH
Q 022834 236 ---QQKDMRLALALGDENAVSMPIAAAA 260 (291)
Q Consensus 236 ---~~~d~~~~~~~a~~~g~~~p~~~~~ 260 (291)
....-......|-+.|+|+|++.+.
T Consensus 80 ~a~~kGTG~Wt~~~al~~gvp~p~i~~A 107 (300)
T d1pgja1 80 RIGSKGTGLWSAQEALEIGVPAPSLNMA 107 (300)
T ss_dssp CCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred cccCCchHHHHHHHHHHcCCCccHHHHH
Confidence 1112356777888999999997663
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.98 E-value=0.00032 Score=55.34 Aligned_cols=32 Identities=34% Similarity=0.628 Sum_probs=30.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
||.|||+|-+|.+.|..|+++|++|++++|+.
T Consensus 8 kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 8 RVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred cEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 89999999999999999999999999999853
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.00075 Score=53.30 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=55.1
Q ss_pred eEEEE-ec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI-G~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+.+| |+ +.+|..++..|+++|.+|.+++|++++++.+.++ ..+ ...++..+. +.+...++..+
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~-------~~~--~~~~~~~~~~Dvs~~~~v~~~~--- 75 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-------CKG--LGAKVHTFVVDCSNREDIYSSA--- 75 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEeeCCCHHHHHHHH---
Confidence 56666 54 6799999999999999999999999988776531 111 122333333 44666667666
Q ss_pred CccccccCCCcEEEEcCCC
Q 022834 78 GGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~ 96 (291)
+.+.....+-+++|+....
T Consensus 76 ~~i~~~~g~idilinnag~ 94 (244)
T d1yb1a_ 76 KKVKAEIGDVSILVNNAGV 94 (244)
T ss_dssp HHHHHHTCCCSEEEECCCC
T ss_pred HHHHHHcCCCceeEeeccc
Confidence 5555555555677765543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.95 E-value=0.00072 Score=53.82 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=54.3
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
||++| |.+.+|.+++..|++.|++|.+.+|++++++.+.++ ..+ ...++..+. +.+..+++.++
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-------l~~--~g~~~~~~~~Dvs~~~~v~~~~--- 70 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE-------LRE--AGVEADGRTCDVRSVPEIEALV--- 70 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEeecCCHHHHHHHH---
Confidence 78888 668899999999999999999999998887765431 111 012333333 34666777776
Q ss_pred CccccccCCCcEEEEcC
Q 022834 78 GGVLEQICPGKGYIDMS 94 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s 94 (291)
+++...+.+=+++|+..
T Consensus 71 ~~~~~~~g~iDilVnnA 87 (257)
T d2rhca1 71 AAVVERYGPVDVLVNNA 87 (257)
T ss_dssp HHHHHHTCSCSEEEECC
T ss_pred HHHHHHhCCCCEEEecc
Confidence 55555554445677644
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.94 E-value=0.0024 Score=47.49 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=55.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcccC-----C--HHHHHh-----hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGG-----S--PAEVIK-----KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~-----~--~~~~~~-----~~dvvii~vp~~~ 68 (291)
+|.|+|+|.+|......+...|. +|++.|+++++.+..++.|...+- + ..+... ..|++|.|+..+.
T Consensus 30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~~~ 109 (174)
T d1p0fa2 30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIE 109 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred EEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCCCch
Confidence 68999999999999999998885 688999999999988888865321 1 222221 3799999997766
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
.....+
T Consensus 110 ~~~~~~ 115 (174)
T d1p0fa2 110 TMMNAL 115 (174)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.94 E-value=0.00069 Score=53.88 Aligned_cols=82 Identities=13% Similarity=0.183 Sum_probs=53.2
Q ss_pred CeEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhc
Q 022834 1 MEVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~ 76 (291)
.||++| |.+.+|.+++..|++.|++|.+.+|++++++.+.++ ..+ ...+++.+. +.+..++++++
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------i~~--~g~~~~~~~~Dv~~~~~v~~~~-- 69 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASE-------INQ--AGGHAVAVKVDVSDRDQVFAAV-- 69 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTSHHHHHHHH--
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEeeCCCHHHHHHHH--
Confidence 488877 557899999999999999999999999887765431 111 012333332 33556666666
Q ss_pred cCccccccCCCcEEEEcC
Q 022834 77 KGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s 94 (291)
+.+...+.+=+++|+..
T Consensus 70 -~~~~~~~g~iDilVnnA 86 (255)
T d1gega_ 70 -EQARKTLGGFDVIVNNA 86 (255)
T ss_dssp -HHHHHHTTCCCEEEECC
T ss_pred -HHHHHHhCCccEEEecc
Confidence 55554444445666644
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.00043 Score=51.92 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=32.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
.||+|||.|..|..-|..|+++||+|++++++++-
T Consensus 44 k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 44 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI 78 (179)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred cEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence 37999999999999999999999999999997654
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.90 E-value=0.00015 Score=53.16 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=52.5
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCc---EEEEcCCcchhHHHHHC--CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFK---VTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~---V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
||+|||+ |..|..|.+.|.++.|. +.....+...-+.+... ........++...+.|++++|+|.....+ ..
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~-~~- 80 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAK-YA- 80 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHH-HH-
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhh-HH-
Confidence 7999998 99999999999988653 33333221111111000 11112223344567899999997644332 22
Q ss_pred ccCccccccCCCcEEEEcCCC
Q 022834 76 DKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. ....++..|||+|..
T Consensus 81 --~---~~~~~~~~VIDlSsd 96 (154)
T d2gz1a1 81 --P---YAVKAGVVVVDNTSY 96 (154)
T ss_dssp --H---HHHHTTCEEEECSST
T ss_pred --h---hhccccceehhcChh
Confidence 1 234578899999876
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.86 E-value=0.00085 Score=49.85 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=52.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcc-c---CC-HHHHHh-----hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATV-G---GS-PAEVIK-----KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~-~---~~-~~~~~~-----~~dvvii~vp~~~~~ 70 (291)
+|.|+|+|.+|...+..+...|. .|++.++++++.+.+++.|... . ++ .++..+ ..|++|.|+.....+
T Consensus 35 ~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~ 114 (172)
T d1h2ba2 35 YVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATV 114 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHHHH
T ss_pred EEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcchHH
Confidence 58899999999999888877774 6778899999998888877532 1 12 222222 278999999776555
Q ss_pred HHHH
Q 022834 71 LSVV 74 (291)
Q Consensus 71 ~~v~ 74 (291)
+..+
T Consensus 115 ~~a~ 118 (172)
T d1h2ba2 115 DYTP 118 (172)
T ss_dssp HHGG
T ss_pred HHHH
Confidence 5555
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.83 E-value=0.00073 Score=50.85 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=42.3
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHH-------CCC-cccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVA-------HGA-TVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~-------~g~-~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
+||+|||+ |..|.-|.+.|.++- +++.....+...-+.+.+ ... ......++...++|++|.|+|....
T Consensus 6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s 84 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT 84 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence 48999987 999999999999863 465544322121112211 111 1122233445789999999988543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.81 E-value=0.0015 Score=48.36 Aligned_cols=86 Identities=10% Similarity=0.055 Sum_probs=59.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHCCCccc-----CCHHH-HH-----hhCCEEEEecCCHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVG-----GSPAE-VI-----KKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~-~~-----~~~dvvii~vp~~~ 68 (291)
+|.|+|+ |.+|...+..+...| .+|++.++++++.+.+++.|.... .+..+ .. +..|++|-|++.+.
T Consensus 30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~ 109 (170)
T d1jvba2 30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEK 109 (170)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCHH
T ss_pred EEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccccch
Confidence 6899995 999999999888888 489999999999888887775321 12222 22 13789999997655
Q ss_pred HHHHHHhccCccccccCCCcEEEEcC
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s 94 (291)
.++..+ ..++++..++..+
T Consensus 110 ~~~~a~-------~~l~~~G~iv~~G 128 (170)
T d1jvba2 110 TLSVYP-------KALAKQGKYVMVG 128 (170)
T ss_dssp HHTTGG-------GGEEEEEEEEECC
T ss_pred HHHhhh-------hhcccCCEEEEec
Confidence 554443 3444555555554
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.78 E-value=0.00075 Score=53.51 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=53.1
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|++|.+++|++++++.+.++ ..+ ...++..+. +.+..+++.++
T Consensus 11 KvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~-------l~~--~g~~~~~~~~Dvt~~~~v~~~~--- 78 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDE-------IKS--FGYESSGYAGDVSKKEEISEVI--- 78 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH-------HHT--TTCCEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHHH---
Confidence 67777 558899999999999999999999998887765431 100 012333332 34666677776
Q ss_pred CccccccCCCcEEEEcC
Q 022834 78 GGVLEQICPGKGYIDMS 94 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s 94 (291)
+++.....+=+++|+..
T Consensus 79 ~~~~~~~g~iDilvnna 95 (251)
T d2c07a1 79 NKILTEHKNVDILVNNA 95 (251)
T ss_dssp HHHHHHCSCCCEEEECC
T ss_pred HHHHHhcCCceeeeecc
Confidence 55555444445666643
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.00078 Score=47.08 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=30.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|+.|||.|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred eEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence 799999999999999999999999999988754
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.002 Score=50.74 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=53.5
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.++ .-.++..+.+=+.+..++++++ ++
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~---~~ 71 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDY----------LGANGKGLMLNVTDPASIESVL---EK 71 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH----------hCCCCcEEEEEecCHHHhhhhh---hh
Confidence 56777 568899999999999999999999998888766532 1112222222244666777777 55
Q ss_pred cccccCCCcEEEEcC
Q 022834 80 VLEQICPGKGYIDMS 94 (291)
Q Consensus 80 l~~~l~~~~~vv~~s 94 (291)
+.....+=+++|+..
T Consensus 72 ~~~~~g~iDilVnnA 86 (243)
T d1q7ba_ 72 IRAEFGEVDILVNNA 86 (243)
T ss_dssp HHHHTCSCSEEEECC
T ss_pred hhcccCCcceehhhh
Confidence 555444445666644
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.75 E-value=0.00077 Score=46.68 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=30.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+|.|||.|.+|.-+|..|++.|.+|+++.|.+.
T Consensus 24 ~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 799999999999999999999999999988754
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.73 E-value=0.0015 Score=51.39 Aligned_cols=81 Identities=14% Similarity=0.077 Sum_probs=54.1
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.++- -..+..+-.=+.+..++++++ ++
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~---~~ 73 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL----------ADAARYVHLDVTQPAQWKAAV---DT 73 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------GGGEEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------hCcceEEEeecCCHHHHHHHH---HH
Confidence 56666 5588999999999999999999999998887765421 111111111144667777777 55
Q ss_pred cccccCCCcEEEEcCC
Q 022834 80 VLEQICPGKGYIDMST 95 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~ 95 (291)
+.....+=+++|+...
T Consensus 74 ~~~~~g~idilinnAG 89 (244)
T d1nffa_ 74 AVTAFGGLHVLVNNAG 89 (244)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHhCCCeEEEECCc
Confidence 5555545567776553
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.72 E-value=0.00067 Score=51.18 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=31.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKC 36 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~ 36 (291)
.||+|||+|..|...|..|++.|+ +|+++++++.-.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g 41 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG 41 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence 389999999999999999999998 599999876543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00093 Score=46.21 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=31.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
||.|||.|.+|.-+|..|.+.|++|++++|.+.
T Consensus 23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred EEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence 799999999999999999999999999998754
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=96.69 E-value=0.0014 Score=52.04 Aligned_cols=80 Identities=16% Similarity=0.018 Sum_probs=49.9
Q ss_pred EEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEE--EecCCHHHHHHHHhccCc
Q 022834 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI--GMLADPAAALSVVFDKGG 79 (291)
Q Consensus 3 I~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvi--i~vp~~~~~~~v~~~~~~ 79 (291)
+-|.| .+.+|.+++..|++.|++|.+.+|++++++.+.+. ..+. ..++.+ +=+.+..++++++ ++
T Consensus 9 alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~-------~~~~--~~~~~~~~~D~s~~~~~~~~~---~~ 76 (258)
T d1ae1a_ 9 ALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI-------WREK--GLNVEGSVCDLLSRTERDKLM---QT 76 (258)
T ss_dssp EEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHH---HH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCCceEEEeecCCHHHHHHHH---HH
Confidence 44555 68899999999999999999999998877665431 1110 112222 2234556666666 44
Q ss_pred ccccc-CCCcEEEEcC
Q 022834 80 VLEQI-CPGKGYIDMS 94 (291)
Q Consensus 80 l~~~l-~~~~~vv~~s 94 (291)
+.+.. .+..++++..
T Consensus 77 ~~~~~~g~idilinna 92 (258)
T d1ae1a_ 77 VAHVFDGKLNILVNNA 92 (258)
T ss_dssp HHHHTTSCCCEEEECC
T ss_pred HHHHhCCCcEEEeccc
Confidence 54444 2445666544
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.69 E-value=0.0058 Score=45.21 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=54.2
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHCCCccc-------CCHHHHHh-----hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~~dvvii~vp~~~ 68 (291)
+|.|+|+|.+|...+..+...| .+|++.++++++.+...+.|.... +...+..+ ..|++|.++..+.
T Consensus 31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~~~ 110 (176)
T d2jhfa2 31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLD 110 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCCchh
Confidence 6899999999999999999988 578889999999998888775421 11222221 3799999987765
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
..+..+
T Consensus 111 ~~~~a~ 116 (176)
T d2jhfa2 111 TMVTAL 116 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.67 E-value=0.00013 Score=57.24 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=25.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVT 27 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~ 27 (291)
|||+|||+|-+|...|..|+++|++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCce
Confidence 999999999999999999999998643
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.67 E-value=0.001 Score=46.38 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=31.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+|.|||.|.+|.-+|..|++.|++|+++++++.
T Consensus 32 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 32 RLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 799999999999999999999999999998765
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.001 Score=45.57 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=32.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
.||||+|.|.+|..++....+-|+++.++|++++.
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 37999999999999999999999999999987653
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.0016 Score=51.48 Aligned_cols=80 Identities=11% Similarity=0.126 Sum_probs=53.6
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.++.- ++-.+..=+.+..++++++ ++
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~-----------~~~~~~~Dvs~~~~v~~~~---~~ 72 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP-----------GAVFILCDVTQEDDVKTLV---SE 72 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT-----------TEEEEECCTTSHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC-----------CCeEEEccCCCHHHHHHHH---HH
Confidence 55656 56899999999999999999999999988877665421 1111111134666777777 55
Q ss_pred cccccCCCcEEEEcCC
Q 022834 80 VLEQICPGKGYIDMST 95 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~ 95 (291)
+.....+=+++|+...
T Consensus 73 ~~~~~g~iDilVnnAG 88 (250)
T d1ydea1 73 TIRRFGRLDCVVNNAG 88 (250)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHhcCCCCEEEeccc
Confidence 5554444466676543
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.66 E-value=0.001 Score=46.12 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=30.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
||.|||.|.+|.-+|..|++.|.+|+++.|.+.
T Consensus 24 ~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 24 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred EEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence 799999999999999999999999999998643
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=96.65 E-value=0.0032 Score=49.96 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=53.6
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++...+. ..+...+..++.+. +.++.+++.++
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-------~~~~~~~~~~~~~~~Dvt~~~~v~~~~--- 74 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAA-------VLETAPDAEVLTTVADVSDEAQVEAYV--- 74 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHCTTCCEEEEECCTTSHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhhCCCCeEEEEeccCCCHHHHHHHH---
Confidence 56666 557899999999999999999999998887665431 11111223444333 24566677666
Q ss_pred CccccccCCCcEEEEcC
Q 022834 78 GGVLEQICPGKGYIDMS 94 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s 94 (291)
+++...+.+=+++|+..
T Consensus 75 ~~~~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 75 TATTERFGRIDGFFNNA 91 (258)
T ss_dssp HHHHHHHSCCSEEEECC
T ss_pred HHHHHHhCCCCEEEECC
Confidence 55555444446677654
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0015 Score=55.80 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=29.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
+||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 489999999999999999999997 799998753
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=96.62 E-value=0.00088 Score=53.43 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=29.6
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|.|||+|-+|.+.|..|+++|++|++++++.
T Consensus 7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 9999999999999999999999999999864
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.62 E-value=0.0058 Score=43.25 Aligned_cols=88 Identities=17% Similarity=0.290 Sum_probs=61.6
Q ss_pred eEEEEecC----------hhhHHHHHHHHhCCCcEEEEcCCcchh-------HHHHH----CCCcccCCHHHHHhhCCEE
Q 022834 2 EVGFLGLG----------IMGKAISMNLLRNGFKVTVWNRTLSKC-------DELVA----HGATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 2 kI~iIG~G----------~mG~~la~~l~~~g~~V~~~~r~~~~~-------~~l~~----~g~~~~~~~~~~~~~~dvv 60 (291)
||+|+|+- +-...++..|.+.|.+|.+||+.-+.. +.+.. .+....+++.++++++|+|
T Consensus 15 kI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~D~i 94 (136)
T d1mv8a3 15 KVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVL 94 (136)
T ss_dssp EEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEE
T ss_pred EEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhceEE
Confidence 67888863 567889999999999999999632211 11111 1345678999999999999
Q ss_pred EEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 61 ii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
|++++.+. .+++. ....++++|+|+-+..
T Consensus 95 vi~t~h~~-f~~l~-------~~~~~~~~I~D~~~~~ 123 (136)
T d1mv8a3 95 VLGNGDEL-FVDLV-------NKTPSGKKLVDLVGFM 123 (136)
T ss_dssp EECSCCGG-GHHHH-------HSCCTTCEEEESSSCC
T ss_pred EEEeCCHH-HHHHH-------HHhcCCCEEEECCCCC
Confidence 99997643 44444 2234678999987654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.0022 Score=50.93 Aligned_cols=83 Identities=22% Similarity=0.231 Sum_probs=53.1
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|++|.+++|++++++.+.++ ..+.-.+.+++.+. +.++.+++.++
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~Dls~~~~v~~~v--- 80 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAE-------CKSAGYPGTLIPYRCDLSNEEDILSMF--- 80 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCSSEEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCceEEEEEccCCCHHHHHHHH---
Confidence 56666 669999999999999999999999998887765431 00000012333222 34666777766
Q ss_pred CccccccCCCcEEEEcC
Q 022834 78 GGVLEQICPGKGYIDMS 94 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s 94 (291)
+.+...+.+=+++|+..
T Consensus 81 ~~~~~~~g~iD~lVnnA 97 (257)
T d1xg5a_ 81 SAIRSQHSGVDICINNA 97 (257)
T ss_dssp HHHHHHHCCCSEEEECC
T ss_pred HHHHHhcCCCCEEEecc
Confidence 55555444445666654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.61 E-value=0.00089 Score=53.31 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=31.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~ 34 (291)
|+|.|||+|--|..+|..|+++| ++|++++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 79999999999999999999999 58999998764
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.0015 Score=51.80 Aligned_cols=81 Identities=9% Similarity=0.083 Sum_probs=52.7
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.++ ..+ ...+++.+. +.++.++++++
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~-------l~~--~g~~~~~~~~Dvs~~~~~~~~~--- 79 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDE-------IQQ--LGGQAFACRCDITSEQELSALA--- 79 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHH--cCCcEEEEEccCCCHHHHHHHH---
Confidence 67777 668999999999999999999999998887765431 111 012333333 23556666666
Q ss_pred CccccccCCCcEEEEcC
Q 022834 78 GGVLEQICPGKGYIDMS 94 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s 94 (291)
+++...+.+=+++|+..
T Consensus 80 ~~~~~~~g~iDilvnnA 96 (255)
T d1fmca_ 80 DFAISKLGKVDILVNNA 96 (255)
T ss_dssp HHHHHHHSSCCEEEECC
T ss_pred HHHHHHcCCCCEeeeCC
Confidence 45544444445666644
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.59 E-value=0.00073 Score=54.44 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=30.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+|.|||+|..|..+|..|+++|++|+++++.++
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 499999999999999999999999999999764
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.58 E-value=0.0013 Score=45.82 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=30.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
++.|||.|.+|.-+|..|++.|++|+++++++.
T Consensus 34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred cEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 689999999999999999999999999998754
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=96.57 E-value=0.0019 Score=51.40 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=50.9
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.++ ..+ ....+..+. +.+..++++++
T Consensus 9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v~~~~--- 76 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ-------WRS--KGFKVEASVCDLSSRSERQELM--- 76 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCEEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCCceEEEeeCCCHHHHHHHH---
Confidence 56666 557899999999999999999999998887765431 111 011222222 34556667666
Q ss_pred CccccccC-CCcEEEEcC
Q 022834 78 GGVLEQIC-PGKGYIDMS 94 (291)
Q Consensus 78 ~~l~~~l~-~~~~vv~~s 94 (291)
+++...+. +-+++|+..
T Consensus 77 ~~~~~~~~~~idilvnnA 94 (259)
T d2ae2a_ 77 NTVANHFHGKLNILVNNA 94 (259)
T ss_dssp HHHHHHTTTCCCEEEECC
T ss_pred HHHHHHhCCCceEEEECC
Confidence 44444443 346667654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.57 E-value=0.00094 Score=54.79 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=31.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+||.|||+|--|...|..|+++|++|+++++++.
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 5899999999999999999999999999998643
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.55 E-value=0.00092 Score=49.43 Aligned_cols=87 Identities=10% Similarity=0.024 Sum_probs=57.5
Q ss_pred CeEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc------------cCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV------------GGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~------------~~~~~~~~~~~dvvii~vp~~ 67 (291)
+++.|||-+. +|..|+..|++.|..|+.++.+....... ...... .+.+.+....+|++|.++|.+
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG~p 108 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTR-GESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSE 108 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEES-CCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCT
T ss_pred CEEEEECCccccHHHHHHHHHHCCCEEEEecccccccccc-ccceeeeeeccccccccchhHHhhccccCCEEEEccCCC
Confidence 3689999876 59999999999999999887653221000 000000 112456667899999999875
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.. . + -..++++|.+++|.+..
T Consensus 109 ~~-~--i-----~~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 109 NY-K--F-----PTEYIKEGAVCINFACT 129 (171)
T ss_dssp TC-C--B-----CTTTSCTTEEEEECSSS
T ss_pred cc-c--c-----ChhhcccCceEeecccc
Confidence 31 0 1 12456789999998765
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=96.55 E-value=0.0016 Score=51.76 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=52.4
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.+. ..+ ...++..+. +.+..++++++
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v~~~~--- 73 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEAS-------VRE--KGVEARSYVCDVTSEEAVIGTV--- 73 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHT--TTSCEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHHH---
Confidence 55666 457899999999999999999999998887765431 110 112333333 34666777777
Q ss_pred CccccccCCCcEEEEcC
Q 022834 78 GGVLEQICPGKGYIDMS 94 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s 94 (291)
+.+...+.+=+++|+..
T Consensus 74 ~~~~~~~g~iDilVnna 90 (260)
T d1zema1 74 DSVVRDFGKIDFLFNNA 90 (260)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHHhCCCCeehhhh
Confidence 55554444445666543
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.53 E-value=0.0012 Score=46.02 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=29.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~ 32 (291)
++.|||.|.+|.-+|..|++.|.+|+++.++
T Consensus 22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 22 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 6999999999999999999999999999875
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=96.51 E-value=0.0032 Score=49.42 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=51.7
Q ss_pred eEEEE-e-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI-G-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+++| | .+.+|.+++..|++.|++|.+.+|++++++.+.+.- ++..+.+=+.+..++++++ ++
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~------------~~~~~~~Dv~~~~~v~~~~---~~ 70 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV------------GAHPVVMDVADPASVERGF---AE 70 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT------------TCEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc------------CCeEEEEecCCHHHHHHHH---HH
Confidence 45555 4 578999999999999999999999988887765531 1111222234666677766 55
Q ss_pred cccccCCCcEEEEcC
Q 022834 80 VLEQICPGKGYIDMS 94 (291)
Q Consensus 80 l~~~l~~~~~vv~~s 94 (291)
+...+.+=+++|+..
T Consensus 71 ~~~~~g~iDilVnnA 85 (242)
T d1ulsa_ 71 ALAHLGRLDGVVHYA 85 (242)
T ss_dssp HHHHHSSCCEEEECC
T ss_pred HHHhcCCceEEEECC
Confidence 554444445666654
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=96.50 E-value=0.0044 Score=48.89 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=54.6
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.+. +-...++.++. +.+..++++++
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~~~Dv~~~~~v~~~~--- 73 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKS----------VGTPDQIQFFQHDSSDEDGWTKLF--- 73 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCCTTTEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hCCCCcEEEEEccCCCHHHHHHHH---
Confidence 56777 568899999999999999999999998887766542 10111333333 34666777777
Q ss_pred CccccccCCCcEEEEcCC
Q 022834 78 GGVLEQICPGKGYIDMST 95 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~ 95 (291)
+++...+.+=+++|+...
T Consensus 74 ~~~~~~~G~iDiLVnnAg 91 (251)
T d1zk4a1 74 DATEKAFGPVSTLVNNAG 91 (251)
T ss_dssp HHHHHHHSSCCEEEECCC
T ss_pred HHHHHHhCCceEEEeccc
Confidence 555555444467776543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.47 E-value=0.0096 Score=43.85 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=52.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc-------CCHHHHH-----hhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVI-----KKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~-----~~~dvvii~vp~~~ 68 (291)
+|.|+|+|.+|...+..+...|. .|++.++++++.+..++.|...+ ++..+.. ..+|++|.++..+.
T Consensus 31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~~~ 110 (176)
T d2fzwa2 31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVK 110 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred EEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCCCHH
Confidence 58899999999999988888886 57777888888888777775432 1222222 23789999987655
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
..+...
T Consensus 111 ~~~~~~ 116 (176)
T d2fzwa2 111 VMRAAL 116 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.46 E-value=0.0016 Score=45.22 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=30.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+|.|||.|.+|.-+|..|++.|.+|+++.+++.
T Consensus 24 ~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 24 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence 799999999999999999999999999987644
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=96.43 E-value=0.0031 Score=50.52 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=51.6
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+.+| |.+.+|.+++..|++.|++|.+.+|++++++.+.++ .-.++..+..-+.+...++..+ +.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~----------~~~~~~~~~~Dv~~~~~~~~~~---~~ 72 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETD----------HGDNVLGIVGDVRSLEDQKQAA---SR 72 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------cCCCeeEEecccccHHHHHHHH---HH
Confidence 45666 558999999999999999999999998887665431 1112222222344556666666 44
Q ss_pred cccccCCCcEEEEcC
Q 022834 80 VLEQICPGKGYIDMS 94 (291)
Q Consensus 80 l~~~l~~~~~vv~~s 94 (291)
+...+.+=+++|+..
T Consensus 73 ~~~~~g~idilvnnA 87 (276)
T d1bdba_ 73 CVARFGKIDTLIPNA 87 (276)
T ss_dssp HHHHHSCCCEEECCC
T ss_pred HHHHhCCcccccccc
Confidence 444444445666543
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.42 E-value=0.0018 Score=45.35 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=30.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
++.|||.|.+|.-+|..|++.|.+|+++.|++.
T Consensus 24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred EEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 799999999999999999999999999998753
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.40 E-value=0.0018 Score=45.24 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=30.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+|.|||.|.+|.-+|..|++.|++|+++++.+.
T Consensus 32 ~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 32 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence 799999999999999999999999999988653
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=96.40 E-value=0.003 Score=49.97 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=52.7
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.++ + ....+++. +.+..+++.++
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~----------~--~~~~~~~~~Dv~~~~~~~~~~--- 71 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAE----------L--GERSMFVRHDVSSEADWTLVM--- 71 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----------H--CTTEEEECCCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------h--CCCeEEEEeecCCHHHHHHHH---
Confidence 56777 567899999999999999999999998887766542 1 11222222 23556667766
Q ss_pred CccccccCCCcEEEEcCC
Q 022834 78 GGVLEQICPGKGYIDMST 95 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~ 95 (291)
+.+...+.+=+++|+...
T Consensus 72 ~~~~~~~g~iDilVnnAG 89 (253)
T d1hxha_ 72 AAVQRRLGTLNVLVNNAG 89 (253)
T ss_dssp HHHHHHHCSCCEEEECCC
T ss_pred HHHHHHhCCCCeEEeccc
Confidence 555544444466666543
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.40 E-value=0.0014 Score=51.34 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=30.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
+||.|||+|.-|...|..|+++|+ +|+++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 589999999999999999999995 799999864
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.0039 Score=49.00 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=66.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.=....+..+ |..-+....+.++ +.++-+.+.+....-
T Consensus 32 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~~~~ 111 (247)
T d1jw9b_ 32 RVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDD 111 (247)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCH
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence 79999999999999999999996 699998764433334332 2221222222221 467777766432111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (291)
.... ..+....++++++.. ......+.+...+.+..++.+.+.
T Consensus 112 ~~~~-------~~~~~~divid~~d~-~~~~~~in~~~~~~~ip~i~g~~~ 154 (247)
T d1jw9b_ 112 AELA-------ALIAEHDLVLDCTDN-VAVRNQLNAGCFAAKVPLVSGAAI 154 (247)
T ss_dssp HHHH-------HHHHTSSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred cccc-------ccccccceeeeccch-hhhhhhHHHHHHHhCCCccccccc
Confidence 1111 122345677876544 445556666666778888866543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.35 E-value=0.0016 Score=52.28 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=31.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
+||.|||+|.-|..-|..|+++|++|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.34 E-value=0.0037 Score=49.45 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=51.6
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|+.++++.+.++ . ..++..+. +.++.++++++
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~----------~--~~~~~~~~~Dvt~~~~v~~~~--- 70 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAE----------I--GPAACAIALDVTDQASIDRCV--- 70 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHH----------H--CTTEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------h--CCceEEEEeeCCCHHHHHHHH---
Confidence 56666 569999999999999999999999998888776542 1 11222222 33556666666
Q ss_pred CccccccCCCcEEEEcC
Q 022834 78 GGVLEQICPGKGYIDMS 94 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s 94 (291)
+++.....+=+++|+..
T Consensus 71 ~~~~~~~g~iDilVnnA 87 (256)
T d1k2wa_ 71 AELLDRWGSIDILVNNA 87 (256)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHHhCCccEEEeec
Confidence 45544444445666544
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.0016 Score=41.29 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=31.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
++|||+|.|-.|..++..-.+-|++|.++|.+++.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~ 36 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence 37999999999999999999999999999987543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.32 E-value=0.0055 Score=45.28 Aligned_cols=44 Identities=23% Similarity=0.127 Sum_probs=38.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT 45 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~ 45 (291)
+|.|+|+ |.+|..........|.+|++.++++++.+.+++.|..
T Consensus 31 ~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~ 75 (174)
T d1yb5a2 31 SVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH 75 (174)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred EEEEEeccccccccccccccccCcccccccccccccccccccCcc
Confidence 6889995 9999999998888999999998888888888887753
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.31 E-value=0.0013 Score=53.72 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=30.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
||+|||+|..|...|..|+++|++|+++++++
T Consensus 32 kV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 32 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp EEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 79999999999999999999999999999864
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=96.30 E-value=0.003 Score=50.88 Aligned_cols=65 Identities=23% Similarity=0.214 Sum_probs=46.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchh--------HHHHHCCCccc----CC---HHHHHhhCCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC--------DELVAHGATVG----GS---PAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~--------~~l~~~g~~~~----~~---~~~~~~~~dvvii~v 64 (291)
+||.|.|+ |.+|..++..|.++||+|++.+|++... ..+...++.+. .+ ..+....++.++.+.
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~ 83 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL 83 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence 58999985 9999999999999999999999875422 12233444322 12 234556788888876
Q ss_pred C
Q 022834 65 A 65 (291)
Q Consensus 65 p 65 (291)
+
T Consensus 84 ~ 84 (312)
T d1qyda_ 84 A 84 (312)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=96.30 E-value=0.0052 Score=48.55 Aligned_cols=80 Identities=10% Similarity=-0.004 Sum_probs=51.7
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.++- -.++..+..=+.+..++++++ ++
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~---~~ 72 (254)
T d1hdca_ 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----------GDAARYQHLDVTIEEDWQRVV---AY 72 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----------GGGEEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------CCceEEEEcccCCHHHHHHHH---HH
Confidence 44555 5578999999999999999999999998887665431 111122222234666777776 55
Q ss_pred cccccCCCcEEEEcC
Q 022834 80 VLEQICPGKGYIDMS 94 (291)
Q Consensus 80 l~~~l~~~~~vv~~s 94 (291)
+...+.+=+++|+..
T Consensus 73 ~~~~~g~iDilVnnA 87 (254)
T d1hdca_ 73 AREEFGSVDGLVNNA 87 (254)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCccEEEecC
Confidence 554444445666654
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.003 Score=52.01 Aligned_cols=64 Identities=23% Similarity=0.420 Sum_probs=44.9
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-CC-------cccCCHHH-HHhhCCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GA-------TVGGSPAE-VIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~-------~~~~~~~~-~~~~~dvvii~v 64 (291)
|||.|.|+ |.+|+.++..|.+.|| +|++.|+.......+.+. ++ +-..+..+ ..+++|+||-+.
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a 75 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccc
Confidence 99999965 9999999999999985 799988866555544332 11 11112223 566899998875
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.29 E-value=0.0082 Score=43.48 Aligned_cols=107 Identities=12% Similarity=-0.001 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----CCCcccccccccccccCCCC---------CCcccccHHHH
Q 022834 173 VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG----GIANPMFKGKGPTMLQSNYA---------PAFPLKHQQKD 239 (291)
Q Consensus 173 ~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~---------~~~~~~~~~~d 239 (291)
.|.-.+.+...+.|...+++..|-++++++.+...+ ++.++....++..+.++... ....+.....-
T Consensus 34 ~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~sRN~~~G~~l~~G~~~~e~~~~~~~~~~~~vEG~~t 113 (155)
T d1txga1 34 SNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKT 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTCHHHHHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCCCCccHHHHHHhhhhhHHHHHHHhccccccchHHHHH
Confidence 488888899999999999999999999887655432 33443333333344332210 11123345666
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHh
Q 022834 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286 (291)
Q Consensus 240 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 286 (291)
+..+.+.++++++++|+++++++++.. +.|...+++.|-+
T Consensus 114 ~~~v~~l~~~~~i~~Pi~~~vy~Il~~-------~~~~~~~i~~L~~ 153 (155)
T d1txga1 114 AEKAYRLSSKINADTKLLDSIYRVLYE-------GLKVEEVLFELAT 153 (155)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHS-------CCCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHhC-------cCCHHHHHHHHHc
Confidence 788899999999999999999988762 4566666655543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.28 E-value=0.0021 Score=49.63 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=43.8
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEE--EcCCcchhHHHHHCCCcc-------cCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTV--WNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~--~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvvii~v 64 (291)
++|.|.| .|.+|..++..|.++||+|.+ ..|++++.+.+.. ++.. ..+..++++++|.|+.+.
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~d~vi~~a 76 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITDADSINPAFQGIDALVILT 76 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeeccccccccccccceeeEEEE
Confidence 4789998 699999999999999987555 4677766554432 2221 122344567789988776
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.0039 Score=49.26 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=54.7
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++.+...+.-. +......+..+. +.+...+++++
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~-------~~~~~~~~~~~~~Dv~~~~~v~~~~--- 73 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALH-------EQFEPQKTLFIQCDVADQQQLRDTF--- 73 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-------TTSCGGGEEEEECCTTSHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-------HhcCCCcEEEEEeecCCHHHHHHHH---
Confidence 56666 55889999999999999999999999988776543210 000112233322 44666777777
Q ss_pred CccccccCCCcEEEEcCCC
Q 022834 78 GGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~ 96 (291)
+.+...+.+=+++|+....
T Consensus 74 ~~~~~~~G~iDilVnnAg~ 92 (254)
T d2gdza1 74 RKVVDHFGRLDILVNNAGV 92 (254)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHcCCcCeecccccc
Confidence 5555544444677765543
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=96.26 E-value=0.0024 Score=45.14 Aligned_cols=33 Identities=15% Similarity=0.362 Sum_probs=30.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+|.|||.|.+|.-+|..|++.|++|+++++.+.
T Consensus 37 ~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 37 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred EEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence 799999999999999999999999999998754
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.25 E-value=0.0019 Score=44.40 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=30.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
++.|||.|..|.-+|..|++.|++|+++.+.+.
T Consensus 23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred eEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 799999999999999999999999999988654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.23 E-value=0.013 Score=43.10 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=53.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcccCC-------HHHHH-----hhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGS-------PAEVI-----KKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~-------~~~~~-----~~~dvvii~vp~~~ 68 (291)
+|.|+|+|.+|...+..++..|- +|+..++++++.+..++.|+..+-+ ..+.. ...|+++.++....
T Consensus 31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~G~~~ 110 (175)
T d1cdoa2 31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVG 110 (175)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHH
T ss_pred EEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeecCCHH
Confidence 68999999999999999888775 6888999999999998888543211 12222 13789999886655
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
.....+
T Consensus 111 ~~~~a~ 116 (175)
T d1cdoa2 111 VMRNAL 116 (175)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.0027 Score=50.83 Aligned_cols=84 Identities=13% Similarity=0.029 Sum_probs=54.3
Q ss_pred CeEEEE--ecChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFL--GLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iI--G~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|+|++| |.+.+|.++++.|++. |++|++++|++++.+...++ +.+.-.++.++.+=+.+...+++..
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dvs~~~sv~~~~--- 72 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQ-------LQAEGLSPRFHQLDIDDLQSIRALR--- 72 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHH-------HHHTTCCCEEEECCTTCHHHHHHHH---
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEEecCCHHHHHHHH---
Confidence 689999 7799999999999975 89999999999888765431 0000012223333345666677666
Q ss_pred CccccccCCCcEEEEcC
Q 022834 78 GGVLEQICPGKGYIDMS 94 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s 94 (291)
+++.....+=+++|+..
T Consensus 73 ~~~~~~~g~iDiLVnNA 89 (275)
T d1wmaa1 73 DFLRKEYGGLDVLVNNA 89 (275)
T ss_dssp HHHHHHHSSEEEEEECC
T ss_pred HHHHHhcCCcEEEEEcC
Confidence 55544443335666644
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.20 E-value=0.0032 Score=49.68 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=52.7
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|+.++.+...+ ...+.. ..++..+. +.+..+++.++
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~-------~l~~~~-g~~~~~~~~Dv~~~~~v~~~~--- 74 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQ-------KLTEKY-GVETMAFRCDVSNYEEVKKLL--- 74 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHHH-CCCEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHHHHh-CCcEEEEEccCCCHHHHHHHH---
Confidence 55666 55889999999999999999999999887765432 111111 23443333 34556677766
Q ss_pred CccccccCCCcEEEEcC
Q 022834 78 GGVLEQICPGKGYIDMS 94 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s 94 (291)
+++...+.+=+++|+..
T Consensus 75 ~~~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 75 EAVKEKFGKLDTVVNAA 91 (251)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHHcCCCCEEEECC
Confidence 55555444446667654
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.20 E-value=0.0018 Score=50.18 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=30.3
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~~ 34 (291)
+||+|||+|.-|..-|..|+++ ||+|+++++.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 5899999999999999999765 789999998754
|
| >d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Conserved hypothetical protein MTH1747 domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.20 E-value=0.011 Score=40.01 Aligned_cols=101 Identities=15% Similarity=0.207 Sum_probs=68.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHH
Q 022834 164 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA 243 (291)
Q Consensus 164 ~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 243 (291)
|.|..+|++...+..++.+++.|++..+++.|+..+.+ +.+..+....+. ....+.+.+.. ........+++.+
T Consensus 1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~Gv~~~l~-~~l~~s~~~~~~--~~~~~~v~~~~---~ha~Rr~~EM~Ei 74 (112)
T d1i36a1 1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVL-EMLEYTEGNDFR--ESAISRLKSSC---IHARRRYEEMKEV 74 (112)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTSCSSTH--HHHHHHHHHHH---HTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHcCCccHH--HHHHHHhcCCc---chhhHHHHHHHHH
Confidence 67899999999999999999999999999999987644 444433222111 11111111000 1123356778888
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHCC
Q 022834 244 LALGDENAVSMPIAAAANEAFKKARSLG 271 (291)
Q Consensus 244 ~~~a~~~g~~~p~~~~~~~~~~~~~~~g 271 (291)
.++.++. +++.+.++..+.++...+-+
T Consensus 75 a~tl~~~-l~P~m~~a~a~~~~~~~d~~ 101 (112)
T d1i36a1 75 QDMLAEV-IDPVMPTCIIRIFDKLKDVK 101 (112)
T ss_dssp HHHHHTT-SCCSHHHHHHHHHHHHCC--
T ss_pred HHHHHHh-CCchHHHHHHHHHHHHHhcC
Confidence 8888774 88889999998888776543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=96.17 E-value=0.0037 Score=50.49 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=34.3
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|+++| |.|.+|.+++..|++.|++|++.+|+.++.+...
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~ 66 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATA 66 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence 67777 6899999999999999999999999988776544
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=96.14 E-value=0.0022 Score=50.56 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=30.5
Q ss_pred CeEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|||.|| |.+.+|.++++.|++.|++|.+.+|+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 899888 5688999999999999999999998754
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.011 Score=47.67 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=54.2
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEec--CCHHHHHHHHhc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGML--ADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~v--p~~~~~~~v~~~ 76 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|+.++++...++ ...... ....+++.+.. .+..+++.++
T Consensus 13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~-----~~~~~~~~~~~Dvs~~~~v~~~~-- 85 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP-----TKQARVIPIQCNIRNEEEVNNLV-- 85 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT-----TCCCCEEEEECCTTCHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc-----ccCceEEEEeccCCCHHHHHHHH--
Confidence 56666 568899999999999999999999998887765431 000000 01234444443 4566677766
Q ss_pred cCccccccCCCcEEEEcC
Q 022834 77 KGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s 94 (291)
+++...+.+=+++|+..
T Consensus 86 -~~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 86 -KSTLDTFGKINFLVNNG 102 (297)
T ss_dssp -HHHHHHHSCCCEEEECC
T ss_pred -HHHHHHhCCeEEEEeec
Confidence 55555444556777654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.012 Score=45.99 Aligned_cols=75 Identities=20% Similarity=0.147 Sum_probs=49.8
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+.+| |.+.+|.+++..|++.|++|.+.+|++++++.+.++.- ....+.+=+.+...+++++ ++
T Consensus 8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~d~~~v~~~~---~~ 73 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP-----------GIEPVCVDLGDWEATERAL---GS 73 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHH---TT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHH---HH
Confidence 45555 55889999999999999999999999988877665321 1122222344666677766 44
Q ss_pred cccccCCCcEEEEcC
Q 022834 80 VLEQICPGKGYIDMS 94 (291)
Q Consensus 80 l~~~l~~~~~vv~~s 94 (291)
+ .+=+++|+..
T Consensus 74 ~----g~iDilVnnA 84 (244)
T d1pr9a_ 74 V----GPVDLLVNNA 84 (244)
T ss_dssp C----CCCCEEEECC
T ss_pred h----CCceEEEecc
Confidence 3 2335666644
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.10 E-value=0.0041 Score=49.29 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=33.9
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.+
T Consensus 9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~ 50 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLS 50 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 56666 66889999999999999999999999888776543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=96.09 E-value=0.011 Score=46.99 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=51.9
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.++- -....+.++. +.++.+++.++
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l----------~~~~~~~~~~~Dv~~~~~v~~~~--- 73 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI----------GSPDVISFVHCDVTKDEDVRNLV--- 73 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------CCTTTEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------cCCCceEEEEccCCCHHHHHHHH---
Confidence 56666 5688999999999999999999999998887765421 0011111111 34666677766
Q ss_pred CccccccCCCcEEEEcC
Q 022834 78 GGVLEQICPGKGYIDMS 94 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s 94 (291)
+++...+.+=+++|+..
T Consensus 74 ~~~~~~~g~iD~lVnnA 90 (268)
T d2bgka1 74 DTTIAKHGKLDIMFGNV 90 (268)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHHcCCcceecccc
Confidence 55544444445666544
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.09 E-value=0.0048 Score=45.57 Aligned_cols=71 Identities=18% Similarity=0.111 Sum_probs=51.6
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHH------hhCCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI------KKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~------~~~dvvii~vp~~~~~~~v~ 74 (291)
+|.|.|+ |.+|..........|.+|+..++++++.+.+++.|....-+..+.. +.+|+||-|+.+ .++..+
T Consensus 30 ~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~--~~~~~~ 107 (171)
T d1iz0a2 30 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGK--EVEESL 107 (171)
T ss_dssp EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCT--THHHHH
T ss_pred EEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccch--hHHHHH
Confidence 5788885 9999999998888999999999999999988888865432222211 247888887753 344444
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=96.04 E-value=0.011 Score=46.17 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=52.2
Q ss_pred eEEEE-e-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI-G-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| | .+.+|.+++..|++.|++|.+.+|+.++++...++- +.+++++. +.+..++++.+
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~------------~~~~~~~~~Dls~~~~i~~~~--- 70 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL------------EAEAIAVVADVSDPKAVEAVF--- 70 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC------------CSSEEEEECCTTSHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc------------CCceEEEEecCCCHHHHHHHH---
Confidence 44555 5 467999999999999999999999988877665431 11233222 34566777766
Q ss_pred CccccccCCCcEEEEcC
Q 022834 78 GGVLEQICPGKGYIDMS 94 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s 94 (291)
+.+...+.+=+++|+..
T Consensus 71 ~~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 71 AEALEEFGRLHGVAHFA 87 (241)
T ss_dssp HHHHHHHSCCCEEEEGG
T ss_pred HHHHHHhCCccEecccc
Confidence 55555555556677654
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.00 E-value=0.0023 Score=44.59 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=31.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
++.|||.|.+|.-+|..|.+.|.+|++..|++.-
T Consensus 27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI 60 (123)
T ss_dssp EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred eEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 7899999999999999999999999999887653
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.00 E-value=0.0063 Score=48.28 Aligned_cols=85 Identities=14% Similarity=0.184 Sum_probs=55.5
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHH-HhhCCEEEEe--cCCHHHHHHHHhc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEV-IKKCTITIGM--LADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~~dvvii~--vp~~~~~~~v~~~ 76 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.++ ..+. ....++..+. +.+..++++++
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~~Dvt~~~~v~~~~-- 76 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQ-------ILAAGVSEQNVNSVVADVTTDAGQDEIL-- 76 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCGGGEEEEECCTTSHHHHHHHH--
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCcCceEEEEccCCCHHHHHHHH--
Confidence 67888 679999999999999999999999998887765431 0000 0011233332 34666777777
Q ss_pred cCccccccCCCcEEEEcCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~ 96 (291)
+.+.....+=+++|+....
T Consensus 77 -~~~~~~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 77 -STTLGKFGKLDILVNNAGA 95 (264)
T ss_dssp -HHHHHHHSCCCEEEECCC-
T ss_pred -HHHHHHhCCCCEeeccccc
Confidence 5555555455677765443
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0042 Score=48.79 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=34.5
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|+.++++...+
T Consensus 6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 67777 66889999999999999999999999888776543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=95.96 E-value=0.0044 Score=49.14 Aligned_cols=82 Identities=13% Similarity=0.147 Sum_probs=52.8
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~~ 77 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|+.++.+...++ ..+.. ..++..+. +.+...++.++
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------~~~~~-g~~~~~~~~Dv~~~~~v~~~~--- 78 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEK-------VGKEF-GVKTKAYQCDVSNTDIVTKTI--- 78 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHH-------HHHHH-TCCEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHHh-CCceEEEEccCCCHHHHHHHH---
Confidence 56666 557799999999999999999999998877654321 11111 23443333 34666677776
Q ss_pred CccccccCCCcEEEEcC
Q 022834 78 GGVLEQICPGKGYIDMS 94 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s 94 (291)
+++.....+=+++|+..
T Consensus 79 ~~~~~~~g~iDilVnnA 95 (260)
T d1h5qa_ 79 QQIDADLGPISGLIANA 95 (260)
T ss_dssp HHHHHHSCSEEEEEECC
T ss_pred HHHHHHhCCCcEecccc
Confidence 55555444445666644
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.95 E-value=0.0046 Score=42.70 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=30.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+|.|||.|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 24 ~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 24 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred EEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 799999999999999999999999999998754
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.94 E-value=0.0077 Score=48.05 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=33.6
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~ 45 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETK 45 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 56666 6688999999999999999999999988877654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.94 E-value=0.0027 Score=52.79 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=29.9
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|||.|.| +|-+|+.++..|.++||+|++.|+..
T Consensus 16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 8999996 69999999999999999999998643
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=95.91 E-value=0.0035 Score=50.58 Aligned_cols=33 Identities=24% Similarity=0.535 Sum_probs=29.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
.+|.|||+|-+|.+.|..|++.|. +|+++++++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 379999999999999999999995 799999864
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.91 E-value=0.0029 Score=47.78 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=29.1
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~ 33 (291)
|||.|||.|..|..+|..|.+. +.+|++++|++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 9999999999999999999885 45799998754
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.87 E-value=0.016 Score=43.63 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=46.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcccC-----CHHHHH----h--hCCEEEEecC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGG-----SPAEVI----K--KCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~-----~~~~~~----~--~~dvvii~vp 65 (291)
+|.|+|+|.+|...+......|. .|++.|+++++++.+.+.|...+. +..+.+ . .+|++|-|+.
T Consensus 28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG 103 (195)
T d1kola2 28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG 103 (195)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred EEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence 68899999999877777766776 688889999999988887754322 222211 1 3788888885
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=95.83 E-value=0.0024 Score=50.75 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=30.9
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|||.|.|+ |.+|..++..|.++||+|+..+|+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 89999987 9999999999999999999999864
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.83 E-value=0.018 Score=44.91 Aligned_cols=41 Identities=24% Similarity=0.210 Sum_probs=33.8
Q ss_pred eEEEE-ec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC
Q 022834 2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42 (291)
Q Consensus 2 kI~iI-G~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~ 42 (291)
|+++| |+ +.+|.+++..|++.|++|.+.+|++++++.+.++
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~ 48 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE 48 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 44444 54 7899999999999999999999998888776653
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0036 Score=50.68 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=30.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+|.|||+|--|...|..|+++|++|+++++++.
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 689999999999999999999999999998643
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=95.78 E-value=0.0041 Score=43.39 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=30.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
++.|||.|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred eEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 689999999999999999999999999988754
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.034 Score=37.66 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=75.0
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~~~ 77 (291)
||.|-|. |.-|+..+..+.+-|-+|. .++. .+.-. .-.|+.++++.+|+++ ++|.-++.||.+...+.++
T Consensus 8 rVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtP--gkgG~-~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~--- 81 (119)
T d2nu7a1 8 KVICQGFTGSQGTFHSEQAIAYGTKMVGGVTP--GKGGT-THLGLPVFNTVREAVAATGATASVIYVPAPFCKDSIL--- 81 (119)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCEEEEEECT--TCTTE-EETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHH---
T ss_pred cEEEEcCCCcHHHHHHHHHHHhCCceEEEEcc--CCCCc-ccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHH---
Confidence 6888897 9999999999999888866 3443 22110 0137889999999875 5899999999988777777
Q ss_pred CccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEE
Q 022834 78 GGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~ 116 (291)
+.+...+ +.++..+-. .+.+..++.....+.+..++
T Consensus 82 EAi~agI---~~iV~ITEgIP~~D~~~i~~~~~~~~~~li 118 (119)
T d2nu7a1 82 EAIDAGI---KLIITITEGIPTLDMLTVKVKLDEAGVRMI 118 (119)
T ss_dssp HHHHTTC---SEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHCCC---CEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence 5555444 355555554 55667777777766666543
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=95.72 E-value=0.017 Score=44.99 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=62.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEE-cCC----------cchhHH------------HHH-CCCcccCCHHHHH-hh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVW-NRT----------LSKCDE------------LVA-HGATVGGSPAEVI-KK 56 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~-~r~----------~~~~~~------------l~~-~g~~~~~~~~~~~-~~ 56 (291)
+|.|=|.|++|...++.|.+.|.+|+.+ |.+ .+.+.. +.. .+.....+.+++. .+
T Consensus 33 ~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 112 (242)
T d1v9la1 33 TVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLD 112 (242)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGCC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchhcccc
Confidence 7899999999999999999999997754 432 111111 111 1344444445544 47
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
||+++-|-... .+. ++-.+.+ +-++|+...|... +.+ -.+.+.++|+.|+
T Consensus 113 ~DIliPcA~~~-~I~------~~~a~~i-~ak~IvegAN~p~-t~~-a~~~L~~rgI~~~ 162 (242)
T d1v9la1 113 VDIFVPAAIEN-VIR------GDNAGLV-KARLVVEGANGPT-TPE-AERILYERGVVVV 162 (242)
T ss_dssp CSEEEECSCSS-CBC------TTTTTTC-CCSEEECCSSSCB-CHH-HHHHHHTTTCEEE
T ss_pred ccEEeecchhc-ccc------HHHHHhc-ccCEEEecCCCCC-Chh-HHHHHHhCCeEEe
Confidence 99998886332 211 1222334 4467777666643 323 3466778887665
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=95.69 E-value=0.035 Score=37.73 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=73.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEE-EcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTV-WNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~-~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~~~ 77 (291)
||.|-|. |..|+..+..+.+-|-+|.. ++. .+--.- -.|+.++++.+|+.+ ++|.-++.||.+...+.++
T Consensus 9 rVivQGiTG~~G~~ht~~m~~yGT~iVaGVtP--gkgG~~-~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi~--- 82 (121)
T d1oi7a1 9 RVLVQGITGREGQFHTKQMLTYGTKIVAGVTP--GKGGME-VLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAAL--- 82 (121)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCEEEEEECT--TCTTCE-ETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHH---
T ss_pred cEEEEcCCCcHHHHHHHHHHHhCCceEeeeec--CCCCcE-EECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHHH---
Confidence 6788887 99999999999998887653 343 221100 137889999999876 5899999998888777777
Q ss_pred CccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEE
Q 022834 78 GGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~ 116 (291)
+.+...+ ++++-.+-+ .+.+..++.+.+.+.+..++
T Consensus 83 EAi~agI---~liv~ITEgVPv~Dm~~i~~~~~~~~~~li 119 (121)
T d1oi7a1 83 EAAHAGI---PLIVLITEGIPTLDMVRAVEEIKALGSRLI 119 (121)
T ss_dssp HHHHTTC---SEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHhCCC---cEEEEecCCCCHHHHHHHHHHHHhCCCEEe
Confidence 5555444 455555555 45566667777766665554
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=95.68 E-value=0.0094 Score=47.17 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=48.6
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcc-hhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~ 76 (291)
|++|| |.+.+|.+++..|++.|++|.+.+|+.+ .++.+.+. ..+ ...+++.+. +.+...+++++
T Consensus 8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~-------~~~--~g~~~~~~~~Dvt~~~~v~~~~-- 76 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEE-------IKK--VGGEAIAVKGDVTVESDVINLV-- 76 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-------HHH--TTCEEEEEECCTTSHHHHHHHH--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHHH--
Confidence 67777 6799999999999999999999998764 34433220 000 012333222 23555666665
Q ss_pred cCccccccCCCcEEEEcC
Q 022834 77 KGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s 94 (291)
+++...+.+=+++|+..
T Consensus 77 -~~~~~~~G~iDiLVnnA 93 (261)
T d1geea_ 77 -QSAIKEFGKLDVMINNA 93 (261)
T ss_dssp -HHHHHHHSCCCEEEECC
T ss_pred -HHHHHHhCCCCEeeccc
Confidence 44444443445666544
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.66 E-value=0.005 Score=47.52 Aligned_cols=31 Identities=32% Similarity=0.219 Sum_probs=29.5
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|.|||+|.-|...|..|+++|++|+++++++
T Consensus 8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 7899999999999999999999999999874
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.64 E-value=0.0035 Score=45.21 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=28.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR 31 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r 31 (291)
+++.|||.|.+|..-+..|.++|.+|+++++
T Consensus 14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3789999999999999999999999999964
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=95.63 E-value=0.016 Score=45.42 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=49.4
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|+++..+...+.+. ..+-+=+.+..++++++ ++
T Consensus 6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~-------------~~~~~Dv~~~~~v~~~~---~~ 69 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGG-------------AFFQVDLEDERERVRFV---EE 69 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTC-------------EEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC-------------eEEEEeCCCHHHHHHHH---HH
Confidence 55666 57999999999999999999999998765443322121 11211234666677766 55
Q ss_pred cccccCCCcEEEEcC
Q 022834 80 VLEQICPGKGYIDMS 94 (291)
Q Consensus 80 l~~~l~~~~~vv~~s 94 (291)
+...+.+=+++|+..
T Consensus 70 ~~~~~G~iDiLVnnA 84 (248)
T d2d1ya1 70 AAYALGRVDVLVNNA 84 (248)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHhcCCCCeEEEeC
Confidence 555444445666643
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.63 E-value=0.0057 Score=47.45 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=31.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
||.|||+|.-|...|..|++.|++|++++++++-
T Consensus 51 ~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 51 SVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred eEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence 7999999999999999999999999999987643
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.62 E-value=0.0052 Score=50.43 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=29.4
Q ss_pred eEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~ 34 (291)
||+|||+|.-|...|..|++.| ++|++++++..
T Consensus 6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 7999999999999999998766 69999999754
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.57 E-value=0.0013 Score=46.21 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=27.1
Q ss_pred eEEEEecChhhHHHHHHHHh-CCCcEE-EEcCCcchh
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKC 36 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g~~V~-~~~r~~~~~ 36 (291)
+|.|+|+|.+|.+++..+.. .+|++. ++|-++++.
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~ 41 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKV 41 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTT
T ss_pred eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhc
Confidence 68999999999999987753 567766 457776653
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=95.57 E-value=0.027 Score=44.36 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=51.2
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCc-chhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~ 76 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++ +.++.+.+ ...+ ....+++.+. +.+..++++++
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~-------~~~~-~~g~~~~~~~~Dv~~~~~v~~~~-- 74 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRA-------GLAA-QHGVKVLYDGADLSKGEAVRGLV-- 74 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHH-------HHHH-HHTSCEEEECCCTTSHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH-------HHHH-hcCCcEEEEECCCCCHHHHHHHH--
Confidence 67777 668899999999999999999999874 44444332 0111 1123444433 34556666666
Q ss_pred cCccccccCCCcEEEEcC
Q 022834 77 KGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s 94 (291)
+++...+.+=+++|+..
T Consensus 75 -~~~~~~~G~iDiLVnnA 91 (260)
T d1x1ta1 75 -DNAVRQMGRIDILVNNA 91 (260)
T ss_dssp -HHHHHHHSCCSEEEECC
T ss_pred -HHHHHHhCCCcEEEeec
Confidence 55554444446666654
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=95.57 E-value=0.008 Score=46.94 Aligned_cols=83 Identities=12% Similarity=0.144 Sum_probs=53.2
Q ss_pred CeEEEE-e-cChhhHHHHHHHHhCCCc-------EEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHH
Q 022834 1 MEVGFL-G-LGIMGKAISMNLLRNGFK-------VTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAA 69 (291)
Q Consensus 1 mkI~iI-G-~G~mG~~la~~l~~~g~~-------V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~ 69 (291)
++|.+| | .+.+|.+++..|++.|++ |.+++|++++++.+.++ ..+ ...++..+. +.+..+
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dvt~~~~ 71 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE-------CRA--EGALTDTITADISDMAD 71 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH-------HHT--TTCEEEEEECCTTSHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEEecCCCHHH
Confidence 356666 4 478999999999999987 88999998887765431 000 112222222 446667
Q ss_pred HHHHHhccCccccccCCCcEEEEcCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
+++++ +.+...+.+=+++|+...
T Consensus 72 v~~~~---~~~~~~~g~iDilvnnAg 94 (240)
T d2bd0a1 72 VRRLT---THIVERYGHIDCLVNNAG 94 (240)
T ss_dssp HHHHH---HHHHHHTSCCSEEEECCC
T ss_pred HHHHH---HHHHHHcCCcceeecccc
Confidence 77776 555555545567776543
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=95.56 E-value=0.0059 Score=49.40 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=31.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
+|.|||+|.-|.+++..|.+.|++|++++++++-
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~i 42 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV 42 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCc
Confidence 5899999999999999999999999999997654
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.0055 Score=49.78 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=30.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
||.|||+|--|..-|..|+++|++|+++..++
T Consensus 7 kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 7 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 79999999999999999999999999998753
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.55 E-value=0.0074 Score=48.08 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=34.3
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|++++++.+.+
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~ 47 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQ 47 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 56666 66889999999999999999999999988776543
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0045 Score=48.63 Aligned_cols=40 Identities=30% Similarity=0.298 Sum_probs=34.7
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
|+++| |.+.+|.++++.|++.|++|.+.+|++++++.+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK 48 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 67777 77999999999999999999999999887766544
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=95.53 E-value=0.006 Score=48.63 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=45.5
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhH---------HHHHCCCccc-------CCHHHHHhhCCEEEEe
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD---------ELVAHGATVG-------GSPAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~---------~l~~~g~~~~-------~~~~~~~~~~dvvii~ 63 (291)
+||.|+|+ |.+|..++..|.++||+|++.+|++.... .+...++.+. .+..+....++.++.+
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~~ 83 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIST 83 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeeec
Confidence 58999986 99999999999999999999998765421 1222343321 1223455678888777
Q ss_pred cC
Q 022834 64 LA 65 (291)
Q Consensus 64 vp 65 (291)
..
T Consensus 84 ~~ 85 (307)
T d1qyca_ 84 VG 85 (307)
T ss_dssp CC
T ss_pred cc
Confidence 63
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=95.51 E-value=0.017 Score=45.72 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=29.0
Q ss_pred eEEEEec-C--hhhHHHHHHHHhCCCcEEEEcCCcchhH
Q 022834 2 EVGFLGL-G--IMGKAISMNLLRNGFKVTVWNRTLSKCD 37 (291)
Q Consensus 2 kI~iIG~-G--~mG~~la~~l~~~g~~V~~~~r~~~~~~ 37 (291)
++.|.|+ | .+|.+++..|++.|++|.+.+|+++..+
T Consensus 7 ~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~ 45 (274)
T d2pd4a1 7 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEK 45 (274)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4556675 5 5999999999999999999999864333
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=95.50 E-value=0.016 Score=45.32 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=50.8
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEE-cCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~ 76 (291)
+|.+| |.+.+|.+++..|++.|++|.+. .|+++..+.+.++ ..+. ..++..+. +.+..++++++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~-------~~~~--g~~~~~~~~Dv~~~~~v~~~~-- 70 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQ-------IEAY--GGQAITFGGDVSKEADVEAMM-- 70 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-------HHHH--TCEEEEEECCTTSHHHHHHHH--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH-------HHHc--CCcEEEEeCCCCCHHHHHHHH--
Confidence 46777 67899999999999999999885 5666666655421 1111 12333332 34556677766
Q ss_pred cCccccccCCCcEEEEcC
Q 022834 77 KGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s 94 (291)
+++.....+=+++|+..
T Consensus 71 -~~~~~~~g~iDiLVnnA 87 (244)
T d1edoa_ 71 -KTAIDAWGTIDVVVNNA 87 (244)
T ss_dssp -HHHHHHSSCCSEEEECC
T ss_pred -HHHHHHcCCCCcccccc
Confidence 55555444446677654
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=95.46 E-value=0.0081 Score=47.15 Aligned_cols=78 Identities=10% Similarity=0.141 Sum_probs=49.5
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchh-HHH-HHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHh
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKC-DEL-VAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVF 75 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~-~~l-~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~ 75 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|+++.. +.. .+.| .++..+. +.+..+++.++
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~Dvs~~~~v~~~~- 71 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLG-------------RRVLTVKCDVSQPGDVEAFG- 71 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTT-------------CCEEEEECCTTCHHHHHHHH-
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcC-------------CcEEEEEeeCCCHHHHHHHH-
Confidence 56767 557899999999999999999999976432 111 1111 2333333 34666777776
Q ss_pred ccCccccccCCCcEEEEcCC
Q 022834 76 DKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~ 95 (291)
+++...+.+=+++|+...
T Consensus 72 --~~~~~~~G~iDilVnnAG 89 (247)
T d2ew8a1 72 --KQVISTFGRCDILVNNAG 89 (247)
T ss_dssp --HHHHHHHSCCCEEEECCC
T ss_pred --HHHHHHcCCCCEEEECCC
Confidence 555554444467776543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=95.46 E-value=0.0065 Score=48.29 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=29.1
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|.|||+|-+|.+.|..|+++|++|+++++..
T Consensus 6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 7899999999999999999999999999853
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.42 E-value=0.015 Score=43.00 Aligned_cols=72 Identities=19% Similarity=0.050 Sum_probs=49.4
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-----CCHHHHH------hhCCEEEEecCCHHH
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEVI------KKCTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~------~~~dvvii~vp~~~~ 69 (291)
+|.|.| +|.+|...+......|.+|.+..+++++.+.+++.|.... .+..+.+ +..|+++-|+.. ..
T Consensus 28 ~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~-~~ 106 (183)
T d1pqwa_ 28 RVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG-EA 106 (183)
T ss_dssp EEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT-HH
T ss_pred EEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc-hH
Confidence 577777 5999999999988899999999888888888877664321 1222222 136777777743 44
Q ss_pred HHHHH
Q 022834 70 ALSVV 74 (291)
Q Consensus 70 ~~~v~ 74 (291)
++..+
T Consensus 107 ~~~~~ 111 (183)
T d1pqwa_ 107 IQRGV 111 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.0063 Score=49.97 Aligned_cols=31 Identities=32% Similarity=0.525 Sum_probs=28.9
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNR 31 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r 31 (291)
|||.|+|+ |.+|+.++..|.+.||+|+++||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 99999955 99999999999999999999976
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.028 Score=49.10 Aligned_cols=116 Identities=12% Similarity=0.188 Sum_probs=67.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~ 69 (291)
.||.|||+|.+|+.++.+|+..|. +++++|.+.=....+..+ |-..+....+.+. +.++-+..+.. .
T Consensus 26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~--~ 103 (529)
T d1yova1 26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE--S 103 (529)
T ss_dssp CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESS--C
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcC--C
Confidence 379999999999999999999995 799998765444445443 1111111111121 24443333311 1
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
..++. ..-...+..-++||++ ...+.....+.+...+.++.++.+...|
T Consensus 104 ~~~~~---~~~~~~~~~~dvVv~~-~~~~~~~~~l~~~c~~~~ip~i~~~~~G 152 (529)
T d1yova1 104 PENLL---DNDPSFFCRFTVVVAT-QLPESTSLRLADVLWNSQIPLLICRTYG 152 (529)
T ss_dssp HHHHH---HSCGGGGGGCSEEEEE-SCCHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred chhhh---hhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 23333 1222334344566654 5566666777777777788777655433
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=95.22 E-value=0.0088 Score=46.57 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=32.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE 38 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 38 (291)
.|.|||+|..|...|..|+++|++|+++++++.--..
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~ 40 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRK 40 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcc
Confidence 3899999999999999999999999999987654433
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=95.14 E-value=0.011 Score=48.72 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=46.3
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHH--HHH-CCCcc-----cCC---HHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDE--LVA-HGATV-----GGS---PAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~--l~~-~g~~~-----~~~---~~~~~~~~dvvii~vp 65 (291)
++|.|+|+ |.+|+.++..|.++||+|++..|++++... +.. .|+.+ .+. .+.+...+|.+++..+
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~ 80 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT 80 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecc
Confidence 47999975 999999999999999999999998766532 332 24332 221 2345567888887664
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.07 E-value=0.018 Score=45.69 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=48.5
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCc-chhHHHHHCCCcccCCHHHHHhhCCEEEEe--cCCHHHHHHHHhc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~~dvvii~--vp~~~~~~~v~~~ 76 (291)
|+++| |.+.+|.+++..|++.|++|.+.+++. +.++.+.+. ..+ ...++.++. +.+...++..+
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~-------~~~--~g~~~~~~~~D~~~~~~v~~~~-- 87 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAA-------IKK--NGSDAACVKANVGVVEDIVRMF-- 87 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHH-------HHh--hCCceeeEeCCCCCHHHHHHHH--
Confidence 66777 579999999999999999999987764 444433221 000 112333333 23555666666
Q ss_pred cCccccccCCCcEEEEcC
Q 022834 77 KGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s 94 (291)
+++.....+=+++|+..
T Consensus 88 -~~~~~~~g~idilV~na 104 (272)
T d1g0oa_ 88 -EEAVKIFGKLDIVCSNS 104 (272)
T ss_dssp -HHHHHHHSCCCEEEECC
T ss_pred -HHHHHHhCCCCcccccc
Confidence 44544443445666544
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.06 E-value=0.0051 Score=47.54 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=30.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-------cEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-------KVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-------~V~~~~r~~~ 34 (291)
||+|||+|.-|.+-|..|+++|| +|++|++.+.
T Consensus 4 ~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 4 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred EEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 89999999999999999999884 7999998764
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.04 E-value=0.42 Score=36.52 Aligned_cols=170 Identities=16% Similarity=0.179 Sum_probs=88.5
Q ss_pred CeEEEEecChhhHHHHHHHHh-CCCcEEEE-cCC----------cchhHHHHHC-C-------CcccCCHHHHHh-hCCE
Q 022834 1 MEVGFLGLGIMGKAISMNLLR-NGFKVTVW-NRT----------LSKCDELVAH-G-------ATVGGSPAEVIK-KCTI 59 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~-~g~~V~~~-~r~----------~~~~~~l~~~-g-------~~~~~~~~~~~~-~~dv 59 (291)
.+|.|=|+|++|..+++.|.+ .|..|+.+ |.+ .+.+..+.+. + .... +.++... +||+
T Consensus 32 ~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~DI 110 (234)
T d1b26a1 32 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVDI 110 (234)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHHHHTSCCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-ccccccccccce
Confidence 378999999999999999974 58887644 322 2222233322 2 1122 4455544 8999
Q ss_pred EEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCC
Q 022834 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE 139 (291)
Q Consensus 60 vii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 139 (291)
++-|--...-.++.. + .+ +-++|+...|... +.+ ..+.+.++|+.|+... .+..|...
T Consensus 111 ~~PcA~~~~I~~~~a---~----~l-~~~~I~e~AN~p~-t~~-a~~~L~~rgI~~~PD~------~aNaGGVi------ 168 (234)
T d1b26a1 111 LVPAALEGAIHAGNA---E----RI-KAKAVVEGANGPT-TPE-ADEILSRRGILVVPDI------LANAGGVT------ 168 (234)
T ss_dssp EEECSCTTCBCHHHH---T----TC-CCSEEECCSSSCB-CHH-HHHHHHHTTCEEECHH------HHTTHHHH------
T ss_pred eecchhcccccHHHH---H----Hh-hhceEeecCCCCC-CHH-HHHHHHHCCeEEechH------HhcCCCee------
Confidence 888752222122222 2 23 2357777666532 222 3456778887665222 22222110
Q ss_pred HHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 140 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 140 ~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
-..+ ++........+ ... -+.+-+...+...+.+.+..+++.++++.+....+.
T Consensus 169 ~s~~----E~~qn~~~~~w-----~~e----~V~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A 222 (234)
T d1b26a1 169 VSYF----EWVQDLQSFFW-----DLD----QVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILA 222 (234)
T ss_dssp HHHH----HHHHHHTTCCC-----CHH----HHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred eeeh----hcccccchhcc-----cHH----HHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 1111 22222111100 111 223333444566677788888999998876654443
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.015 Score=46.19 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=33.4
Q ss_pred eEEEE-e-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iI-G-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
|+++| | .+.+|.+++..|++.|++|.+.+|+.++++.+.+
T Consensus 15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45555 4 4779999999999999999999999988877643
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.95 E-value=0.022 Score=46.60 Aligned_cols=63 Identities=29% Similarity=0.308 Sum_probs=44.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC------C---------CcccCCHHHHHhhCCEEEEec
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH------G---------ATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~------g---------~~~~~~~~~~~~~~dvvii~v 64 (291)
+|.|.|+ |.+|+.++..|.++||+|....|+.++...+... . +.-..+..+++.++|.++-+.
T Consensus 13 ~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~~a 91 (342)
T d1y1pa1 13 LVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIA 91 (342)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECC
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhhhc
Confidence 6888855 8999999999999999999988887766554321 0 111223445667788777554
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=94.91 E-value=0.011 Score=43.17 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=29.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~ 34 (291)
.||.|||.|..|..+|..|.+.++ +|+++++++.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence 489999999999999999999775 6889988763
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.022 Score=38.84 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=60.1
Q ss_pred CeEEEEecCh-----------hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCC-EEEEecCCHH
Q 022834 1 MEVGFLGLGI-----------MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCT-ITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~-----------mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~d-vvii~vp~~~ 68 (291)
.||.|||.|. .+...++.|.+.|+++++.+.||+.+ .++. + -+| ++|..+ +..
T Consensus 5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV----------std~-d---~aD~lYfepl-t~e 69 (121)
T d1a9xa4 5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV----------STDY-D---TSDRLYFEPV-TLE 69 (121)
T ss_dssp CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS----------TTST-T---SSSEEECCCC-SHH
T ss_pred CEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh----------hcCh-h---hcCceEEccC-CHH
Confidence 3789999984 57788889999999999999998754 2232 2 234 456677 667
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
.+.+++. .-+++.+++ +....+...+...+.+.|+.++
T Consensus 70 ~v~~Ii~-------~E~p~~ii~---~~GGQtalnla~~L~~~gv~iL 107 (121)
T d1a9xa4 70 DVLEIVR-------IEKPKGVIV---QYGGQTPLKLARALEAAGVPVI 107 (121)
T ss_dssp HHHHHHH-------HHCCSEEEC---SSSTHHHHTTHHHHHHTTCCBC
T ss_pred HHHHHHH-------HhCCCEEEe---ehhhhhHHHHHHHHHHcCCcEE
Confidence 7777762 123555555 3334455666666777776544
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.88 E-value=0.0066 Score=47.03 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=29.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC--CcEEEEcCCcch
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSK 35 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~ 35 (291)
+||.|.|+ |.+|..+...|.+.| ++|++.+|++..
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~ 52 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT 52 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhh
Confidence 36889965 999999999999988 489999987654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.85 E-value=0.051 Score=43.27 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=61.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEc-----------CCcchhHHHHHCCCccc------CCHHHHH-hhCCEEEEe
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWN-----------RTLSKCDELVAHGATVG------GSPAEVI-KKCTITIGM 63 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~-----------r~~~~~~~l~~~g~~~~------~~~~~~~-~~~dvvii~ 63 (291)
+|.|=|.|++|...+..|.+.|.+|+.++ .+.+.+.......-.+. .+.+++. .+||+++-|
T Consensus 38 tvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~DIliPa 117 (293)
T d1hwxa1 38 TFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPA 117 (293)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCccEEeec
Confidence 68899999999999999999999877543 23344444444321110 1122333 379998877
Q ss_pred cCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 64 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
- ... ++. .+-.+.+ .-++|+...|+. .+.+ -.+.+.++|+.|+
T Consensus 118 A-~~~----~I~--~~~a~~l-~ak~I~EgAN~P-~t~e-A~~~L~~~gI~vi 160 (293)
T d1hwxa1 118 A-SEK----QLT--KSNAPRV-KAKIIAEGANGP-TTPQ-ADKIFLERNIMVI 160 (293)
T ss_dssp S-SSS----CBC--TTTGGGC-CCSEEECCSSSC-BCHH-HHHHHHHTTCEEE
T ss_pred c-ccc----ccc--HHHHHHH-hhCEEeccCCCC-CCcc-hHHHHHHCCCEEe
Confidence 5 222 121 1222334 346777666654 3333 3466778887665
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.84 E-value=0.015 Score=45.76 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=29.6
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEE-cCCcchhHHH
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVW-NRTLSKCDEL 39 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~-~r~~~~~~~l 39 (291)
|+++| |.+.+|.+++..|++.|++|++. .++.+..+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~ 47 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEV 47 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHH
Confidence 56666 66889999999999999999885 5665555543
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.011 Score=48.11 Aligned_cols=31 Identities=32% Similarity=0.337 Sum_probs=29.2
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|.|||+|.-|.+-|..|+++|++|+++++++
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 8999999999999999999999999998754
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.77 E-value=0.0075 Score=43.96 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----CCCccccccc--ccccccCCCC-----CCcccccH
Q 022834 168 KMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG----GIANPMFKGK--GPTMLQSNYA-----PAFPLKHQ 236 (291)
Q Consensus 168 ~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~----~~~s~~~~~~--~~~~~~~~~~-----~~~~~~~~ 236 (291)
.+++..|...+.+...+.|+..+++..|-+.++++.+...+ ++.++..+++ +..+.++... ....+...
T Consensus 25 gl~~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~~G~~l~~g~~~~e~~~~~~~~vEG 104 (160)
T d1n1ea1 25 GLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEG 104 (160)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHHHHHHHHHTCCHHHHHHSCCSCCHH
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHHHHHHHhccccHHHHHHhccchHHH
Confidence 33455788889999999999999999998888777654432 2333322222 2222222110 01123446
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 022834 237 QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV 284 (291)
Q Consensus 237 ~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~ 284 (291)
..-+..+.+.++++++++|+++++++++. +..+...+++.|
T Consensus 105 ~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~-------~~~~p~~~i~~L 145 (160)
T d1n1ea1 105 VATADPLMRLAKQLKVKMPLCHQIYEIVY-------KKKNPRDALADL 145 (160)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHH-------SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHh-------CcCCHHHHHHHH
Confidence 67778889999999999999999998874 445555555555
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=94.75 E-value=0.016 Score=45.33 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=34.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
.|.|||+|..|...|..|+++|++|.++++++..-..+.
T Consensus 6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~ 44 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL 44 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceE
Confidence 489999999999999999999999999999876555544
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.75 E-value=0.036 Score=43.39 Aligned_cols=84 Identities=15% Similarity=0.121 Sum_probs=48.2
Q ss_pred eEEEE-ec-C--hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFL-GL-G--IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iI-G~-G--~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|+++| |+ | .+|.+++..|++.|++|.+.+|+++..+...+ ..+....+..+-.=+.+..+++.++
T Consensus 9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~D~~~~~~v~~~~--- 77 (256)
T d1ulua_ 9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEK--------LAEALGGALLFRADVTQDEELDALF--- 77 (256)
T ss_dssp CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------HHHHTTCCEEEECCTTCHHHHHHHH---
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH--------hhhccCcccccccccCCHHHHHHHH---
Confidence 44544 76 4 59999999999999999999988554333211 0111111122222234566677766
Q ss_pred CccccccCCCcEEEEcCCC
Q 022834 78 GGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~ 96 (291)
+.+.....+=+++|+....
T Consensus 78 ~~~~~~~g~iDilVnnag~ 96 (256)
T d1ulua_ 78 AGVKEAFGGLDYLVHAIAF 96 (256)
T ss_dssp HHHHHHHSSEEEEEECCCC
T ss_pred HHHHHhcCCceEEEecccc
Confidence 4554444344566765543
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=94.73 E-value=0.012 Score=48.04 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=29.4
Q ss_pred eEEEEecChhhHHHHHHHH-----hCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLL-----RNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~-----~~g~~V~~~~r~~~ 34 (291)
.|.|||+|..|..+|..|+ ++|++|+++++.+.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 3899999999999999996 57999999998754
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.71 E-value=0.019 Score=45.17 Aligned_cols=39 Identities=28% Similarity=0.250 Sum_probs=33.7
Q ss_pred eEEEE--ecChhhHHHHHHHHh---CCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFL--GLGIMGKAISMNLLR---NGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~---~g~~V~~~~r~~~~~~~l~ 40 (291)
||+|| |.+.+|.+++..|++ .|++|.+.+|++++++.+.
T Consensus 7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~ 50 (259)
T d1oaaa_ 7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLK 50 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHH
Confidence 78888 447899999999986 7999999999998887654
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.032 Score=34.95 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=35.5
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG 43 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g 43 (291)
+|.|.|. |.+|......+...|++|+...+++++.+.+++.|
T Consensus 34 ~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG 76 (77)
T d1o8ca2 34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG 76 (77)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred cEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence 5677655 99999999988889999999999999988877644
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=94.57 E-value=0.018 Score=44.59 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=30.1
Q ss_pred eEEEE-e-cChhhHHHHHHHHhCCCcEEEEcCCcchhHH
Q 022834 2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDE 38 (291)
Q Consensus 2 kI~iI-G-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 38 (291)
|+++| | .+.+|.+++..|++.|++|.+.+|+++.++.
T Consensus 5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~ 43 (234)
T d1o5ia_ 5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR 43 (234)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence 44444 5 5889999999999999999999999766543
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.44 E-value=0.017 Score=41.83 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=27.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
||.|||.|..|..+|..|++ +++|+++++.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 89999999999999999965 78999998753
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.29 E-value=0.035 Score=43.05 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=29.4
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchh
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKC 36 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~ 36 (291)
|+.+| |.+.+|.+++..|++.|++|.+.+|+.+..
T Consensus 8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~ 44 (237)
T d1uzma1 8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP 44 (237)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence 55566 557899999999999999999999987654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.28 E-value=0.049 Score=39.93 Aligned_cols=44 Identities=20% Similarity=0.055 Sum_probs=36.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT 45 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~ 45 (291)
+|.|+|+ |.+|..........|.+|++.++++++.+.+++.|..
T Consensus 31 ~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~ 75 (179)
T d1qora2 31 QFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW 75 (179)
T ss_dssp EEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS
T ss_pred EEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe
Confidence 5778855 5588888888888899999999999999888776644
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=94.26 E-value=0.058 Score=42.62 Aligned_cols=40 Identities=20% Similarity=0.422 Sum_probs=31.3
Q ss_pred CeEEEE--ecChhhHHHHHHHHhCCCcEEEEc-CCcchhHHHH
Q 022834 1 MEVGFL--GLGIMGKAISMNLLRNGFKVTVWN-RTLSKCDELV 40 (291)
Q Consensus 1 mkI~iI--G~G~mG~~la~~l~~~g~~V~~~~-r~~~~~~~l~ 40 (291)
|-|+|| |.+.+|.+++..|++.|++|.+.+ ++.+..+.+.
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~ 44 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS 44 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence 568888 567899999999999999998865 4555555443
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=94.26 E-value=0.062 Score=41.88 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=28.0
Q ss_pred EEEEecC---hhhHHHHHHHHhCCCcEEEEcCCcchhHH
Q 022834 3 VGFLGLG---IMGKAISMNLLRNGFKVTVWNRTLSKCDE 38 (291)
Q Consensus 3 I~iIG~G---~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 38 (291)
+-|-|++ .+|.+++..|++.|++|.+.+|+++..+.
T Consensus 8 ~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~ 46 (258)
T d1qsga_ 8 ILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGR 46 (258)
T ss_dssp EEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHH
T ss_pred EEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 4444654 48899999999999999999998654443
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=94.16 E-value=0.017 Score=47.33 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=32.9
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDE 38 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 38 (291)
+||.|.| +|-+|+.++..|.++||+|.+.+|+..+...
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~ 47 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPS 47 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHH
Confidence 5899997 6999999999999999999999997765443
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.09 E-value=0.084 Score=38.39 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG 23 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g 23 (291)
++|+++|+|.+|..+.+.|.++.
T Consensus 5 i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 5 VNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCC
T ss_pred EEEEEEeCCHHHHHHHHHHHHhH
Confidence 37999999999999999998754
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.88 E-value=0.17 Score=34.69 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=69.9
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~~~ 77 (291)
||.+-|. |.-|+..+..+.+-|-+|. .+... +--. .-.|+.++++..|+.+ ++|.-++.||.+...+.++
T Consensus 17 rVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPg--KgG~-~~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~dAi~--- 90 (130)
T d1euca1 17 KVICQGFTGKQGTFHSQQALEYGTNLVGGTTPG--KGGK-THLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAIN--- 90 (130)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCEEEEEECTT--CTTC-EETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHH---
T ss_pred eEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccC--CCCc-cccCccchhhHHHHHHhcCCcEEEEecCHHHHHHHHH---
Confidence 6788897 9999999999999888866 34432 2110 0137888999999875 6999999998888777777
Q ss_pred CccccccCCCcEEEEcCCCCH-HHHHHHHHHHHhc
Q 022834 78 GGVLEQICPGKGYIDMSTVDH-ETSIKISRAITSK 111 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~-~~~~~~~~~~~~~ 111 (291)
+.+...+ ++|+-.+-+.| .+..++...+.+.
T Consensus 91 EAi~agI---~liV~ITEgIPv~Dm~~i~~~~~~~ 122 (130)
T d1euca1 91 EAIDAEV---PLVVCITEGIPQQDMVRVKHRLLRQ 122 (130)
T ss_dssp HHHHTTC---SEEEECCCCCCHHHHHHHHHHHTTC
T ss_pred HHHhCCC---CEEEEecCCCCHHHHHHHHHHHHhC
Confidence 5555544 45666666654 4455555544333
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.88 E-value=0.022 Score=41.81 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=27.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~ 32 (291)
.+|.|||.|..|..+|..|.+.|.+|++..+.
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~ 35 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG 35 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEec
Confidence 37999999999999999999999987776443
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=93.76 E-value=0.018 Score=44.56 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=30.2
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchh
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKC 36 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~ 36 (291)
|+++| |.+.+|.+++..|++.|++|.+.+|+++..
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~ 38 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE 38 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc
Confidence 56777 569999999999999999999999987643
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.031 Score=46.07 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=27.0
Q ss_pred eEE-EEe-cChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 2 EVG-FLG-LGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 2 kI~-iIG-~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
||+ |.| +|-+|+.++..|.+.||+|++.+|.+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 677 445 79999999999999999999999854
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=93.65 E-value=0.03 Score=38.19 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=27.2
Q ss_pred eEEEEecChhhHHHHHHHHh---CCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLR---NGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~---~g~~V~~~~r~~~ 34 (291)
+|.|||.|.+|.-+|..|.+ +|.+|+++.+.+.
T Consensus 22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 79999999999999976654 4568999987654
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=93.56 E-value=0.028 Score=42.06 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=28.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCc-E--EEEcCCcchh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFK-V--TVWNRTLSKC 36 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~-V--~~~~r~~~~~ 36 (291)
|||.|||.|.-|+.++..|.+.|.+ | ...|.+.+.+
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L 39 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVL 39 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHH
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHH
Confidence 7999999999999999999987743 4 4556655443
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.56 E-value=0.12 Score=39.87 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=60.5
Q ss_pred CeEEEEecChhhHHHHHHHHh-CCCcEE-EEcCCc----------chhHHHHHC--------CCcccCCHHHHH-hhCCE
Q 022834 1 MEVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTL----------SKCDELVAH--------GATVGGSPAEVI-KKCTI 59 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~-~g~~V~-~~~r~~----------~~~~~l~~~--------g~~~~~~~~~~~-~~~dv 59 (291)
++|+|-|.|++|..+++.|.+ .|..|+ +.|.+- +.+...... +.... +.+++. .+||+
T Consensus 33 ~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~DI 111 (239)
T d1gtma1 33 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLELEVDV 111 (239)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHHHHSCCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-cccccccccccE
Confidence 478999999999999999975 587765 445431 222222221 22222 444543 47999
Q ss_pred EEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 60 vii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
++-|--. ..+. ++-.+.+ +-++|+...|... +.+ -.+.+.++|+.|+
T Consensus 112 l~PcA~~-~~I~------~~~a~~i-~ak~I~e~AN~p~-t~e-a~~~L~~rgI~~i 158 (239)
T d1gtma1 112 LAPAAIE-EVIT------KKNADNI-KAKIVAEVANGPV-TPE-ADEILFEKGILQI 158 (239)
T ss_dssp EEECSCS-CCBC------TTGGGGC-CCSEEECCSSSCB-CHH-HHHHHHHTTCEEE
T ss_pred Eeecccc-cccc------HHHHHhc-cccEEEecCCCCC-CHH-HHHHHHHCCCEEe
Confidence 8888622 2111 1222333 3467777666643 223 3566778887665
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=93.56 E-value=0.085 Score=41.22 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=69.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH----CCCc---ccCCHHHHH--hhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----HGAT---VGGSPAEVI--KKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~----~g~~---~~~~~~~~~--~~~dvvii~vp~~~~~~~ 72 (291)
+|.=+|||. |. ++..+++.|.+|+.+|.+++.++..++ .|+. ...+..+.. ...|+|+... ....+.+
T Consensus 123 ~VLDiGcGs-G~-l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani-~~~~l~~ 199 (254)
T d2nxca1 123 KVLDLGTGS-GV-LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANL-YAELHAA 199 (254)
T ss_dssp EEEEETCTT-SH-HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEEC-CHHHHHH
T ss_pred EEEEcccch-hH-HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcc-ccccHHH
Confidence 455688986 53 455677889999999999998876653 2432 223444443 3578887665 4456677
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
++ +.+...+++|..++. |.........+.+.+.+.|...+.
T Consensus 200 l~---~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 200 LA---PRYREALVPGGRALL-TGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp HH---HHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred HH---HHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHCCCEEEE
Confidence 76 667777877766553 323334456666667777776554
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=93.46 E-value=0.031 Score=40.81 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=27.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWN 30 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~ 30 (291)
|||||=|+|++|..+.+.|.+.+.+|...+
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN 30 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALIN 30 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence 899999999999999999998889988774
|
| >d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Hypothetical protein Ylr011wp species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.42 E-value=0.36 Score=35.37 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=59.6
Q ss_pred CeEEEE-ec---ChhhHHHHHHHH----h------CCCcEEEEcCCcchhHHHHHCC-------C---cccC----CHHH
Q 022834 1 MEVGFL-GL---GIMGKAISMNLL----R------NGFKVTVWNRTLSKCDELVAHG-------A---TVGG----SPAE 52 (291)
Q Consensus 1 mkI~iI-G~---G~mG~~la~~l~----~------~g~~V~~~~r~~~~~~~l~~~g-------~---~~~~----~~~~ 52 (291)
|||.+| |. |+.+..++..+. + .|++|.++|........+.... . .... ...+
T Consensus 1 MKIlvI~GS~R~~s~~~~la~~~~~~l~~~~~~~~~g~~v~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T d1t0ia_ 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (185)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHHHHhhhhcCCCcEEEEEeccccCccccchhhhccccccccccccCCHHHHHHHH
Confidence 899987 54 345565555443 3 3789999874322111110000 0 0000 1224
Q ss_pred HHhhCCEEEEecCCH-----HHHHHHHhccCccccccCCCcEEEEcCCC---CHHHHHHHHHHHHhcCCcEEE
Q 022834 53 VIKKCTITIGMLADP-----AAALSVVFDKGGVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 53 ~~~~~dvvii~vp~~-----~~~~~v~~~~~~l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~~~~~~~~~ 117 (291)
.+..+|.+|+++|.. ..++..+ +.+.+.+ .++.+...|.+ .......+...+...|..++.
T Consensus 81 ~i~~AD~iIi~tP~Y~~~~~~~lK~~i---D~~~~~~-~gKpv~ivs~g~~gg~~a~~~L~~~l~~~g~~vv~ 149 (185)
T d1t0ia_ 81 IVNALDIIVFVTPQYNWGYPAALKNAI---DRLYHEW-HGKPALVVSYGGHGGSKCNDQLQEVLHGLKMNVIG 149 (185)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHH---HTCSTTT-TTCEEEEEEEETTTTHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCeEEEEeeecCCCcHHHHHHH---HHhhHHH-CCCEEEEEEEcCcchHHHHHHHHHHHHHCCCEEcC
Confidence 467899999999854 3577777 5554444 34443333332 233344555666666766663
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=93.40 E-value=0.036 Score=37.71 Aligned_cols=33 Identities=15% Similarity=0.021 Sum_probs=28.0
Q ss_pred eEEEEecChhhHHHHHHHHh---CCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLR---NGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~---~g~~V~~~~r~~~ 34 (291)
++.|||.|.+|.-+|..|.+ .|.+|+++.+.+.
T Consensus 20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred eEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence 79999999999999987664 4789999988654
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=93.39 E-value=0.1 Score=40.75 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=29.4
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
|+.+| |.+.+|.++|..|++.|.+|++..|+.++.+.+
T Consensus 6 K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~ 45 (254)
T d1sbya1 6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL 45 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH
Confidence 45555 557899999999999999998887766655443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.29 E-value=0.17 Score=36.99 Aligned_cols=85 Identities=14% Similarity=-0.003 Sum_probs=56.7
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-----cCCH-HHHH-----hhCCEEEEecCCHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSP-AEVI-----KKCTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~~~~-~~~~-----~~~dvvii~vp~~~~ 69 (291)
+|.|.|+ |.+|...+......|.+|+...+++++.+.+++.|... ..+. +.+. +..|+||-|+. ...
T Consensus 32 ~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-~~~ 110 (182)
T d1v3va2 32 TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-GEF 110 (182)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-HHH
T ss_pred EEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-chh
Confidence 4667777 66888888888889999999999999999888887542 1121 2222 23789999884 455
Q ss_pred HHHHHhccCccccccCCCcEEEEcC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s 94 (291)
.++.+ +.++++..++.+.
T Consensus 111 ~~~~~-------~~l~~~G~~v~~G 128 (182)
T d1v3va2 111 LNTVL-------SQMKDFGKIAICG 128 (182)
T ss_dssp HHHHG-------GGEEEEEEEEECC
T ss_pred hhhhh-------hhccCCCeEEeec
Confidence 55544 3344555555543
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=93.19 E-value=0.15 Score=38.64 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=54.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCC--------cchhHH----HHHC--CCcccCCHHHHHhhCCEEEEecCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT--------LSKCDE----LVAH--GATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~--------~~~~~~----l~~~--g~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
||.|+|+|.-|..++..|.+.+. +++++|+. ....+. +.+. ......+..+++..+++++... .
T Consensus 28 riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-~ 106 (222)
T d1vl6a1 28 KVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-R 106 (222)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-C
T ss_pred EEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-c
Confidence 79999999999999999988774 68888875 111111 1111 2233456777888888766554 3
Q ss_pred HHHH-HHHHhccCccccccCCCcEEEEcCCCCH
Q 022834 67 PAAA-LSVVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 67 ~~~~-~~v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
+..+ ++.+ .+ ..++.+|.-+||-.+
T Consensus 107 ~~~~~~e~m---~~----~~~rPIIFpLSNPt~ 132 (222)
T d1vl6a1 107 GNILKPEWI---KK----MSRKPVIFALANPVP 132 (222)
T ss_dssp SSCSCHHHH---TT----SCSSCEEEECCSSSC
T ss_pred cccccHHHH---hh----cCCCCEEEecCCCcc
Confidence 2222 1223 22 235667888887654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.19 E-value=0.079 Score=38.52 Aligned_cols=45 Identities=24% Similarity=0.236 Sum_probs=37.3
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV 46 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~ 46 (291)
.|.|-| +|.+|..........|.+|+...+++++.+.+.+.|...
T Consensus 26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~ 71 (167)
T d1tt7a2 26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASE 71 (167)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSE
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccc
Confidence 366666 599999999888888999999999999999888776544
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.17 E-value=0.075 Score=35.57 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=48.0
Q ss_pred eEEEEecC----------hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHH
Q 022834 2 EVGFLGLG----------IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 2 kI~iIG~G----------~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~ 71 (291)
+|||+|.- +-..-+...|.+.|.+|.+||+.-...+. ..+.....++.+..+.+|+||+.... ..+.
T Consensus 17 ~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~--~~~~~~~~~l~~~~~~sDiII~~~~~-~~~~ 93 (108)
T d1dlja3 17 VVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES--EDQSVLVNDLENFKKQANIIVTNRYD-NELQ 93 (108)
T ss_dssp EEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT--TCCSEECCCHHHHHHHCSEEECSSCC-GGGG
T ss_pred EEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh--ccCCEEEeCHHHHHhhCCEEEEcCCc-hHHH
Confidence 57777763 45677899999999999999986543221 23566778999999999987766533 3343
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.14 E-value=0.054 Score=38.75 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=28.4
Q ss_pred EEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 3 VGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 3 I~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
+.|+ |.|.+|..+|..|++.|++|+++.+.+.-
T Consensus 42 vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~ 76 (156)
T d1djqa2 42 VVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA 76 (156)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred eEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 3444 99999999999999999999999987543
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.14 E-value=0.037 Score=46.07 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=28.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNR 31 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r 31 (291)
|||.|.|+ |.+|+.++..|.+.||+|+++|.
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDn 33 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDN 33 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEec
Confidence 89999965 99999999999999999999973
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.13 E-value=0.25 Score=39.47 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=28.7
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|+++| |.+.+|.+++..|++.|++|.+.|++.+
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~ 42 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD 42 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 56777 5688999999999999999999988754
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=93.01 E-value=0.041 Score=43.49 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=29.6
Q ss_pred eEEEEecChhhHHHHHHHHh-CCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g~~V~~~~r~~~ 34 (291)
.|.|||+|.-|...|..|++ .|++|+++++.+.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 38999999999999999987 5999999998754
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.047 Score=44.40 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=28.8
Q ss_pred CeEE-EE-ecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVG-FL-GLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~-iI-G~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
.||+ |. |+|-+|+.++..|.++||+|+..+|.+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 4885 55 5599999999999999999999998643
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.75 E-value=0.045 Score=42.22 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=29.4
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
||.|.|+ |.+|.++++.|+++|++|.+.+|+++.
T Consensus 4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~ 38 (235)
T d1ooea_ 4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND 38 (235)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence 6767754 999999999999999999999998653
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=92.69 E-value=0.053 Score=40.91 Aligned_cols=30 Identities=20% Similarity=0.030 Sum_probs=28.4
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCC
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~ 32 (291)
+.|||+|.-|...|..+++.|.+|.+++++
T Consensus 5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 5 YIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 789999999999999999999999999875
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.59 E-value=0.066 Score=39.35 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=37.4
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT 45 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~ 45 (291)
+|.|-| .|.+|..........|.+|+...+++++.+.+.+.|..
T Consensus 34 ~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~ 78 (176)
T d1xa0a2 34 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK 78 (176)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS
T ss_pred EEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc
Confidence 467777 59999999998888999999999999999888877654
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=92.54 E-value=0.088 Score=41.00 Aligned_cols=79 Identities=11% Similarity=0.094 Sum_probs=50.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
||++||. + .+...+.+.|.++++++|+++. |.......++++.+||++|+.= . .-+-.-+ +.++
T Consensus 124 kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~-------gd~p~~~~~~lLp~aD~viiTG-s-TlvN~Tl---~~LL 187 (251)
T d2h1qa1 124 KVGVVGH--F--PHLESLLEPICDLSILEWSPEE-------GDYPLPASEFILPECDYVYITC-A-SVVDKTL---PRLL 187 (251)
T ss_dssp EEEEESC--C--TTHHHHHTTTSEEEEEESSCCT-------TCEEGGGHHHHGGGCSEEEEET-H-HHHHTCH---HHHH
T ss_pred EEEEEec--c--hhHHHHHhcCCcEEEEeCCCCC-------CCCCchHHHHhhhcCCEEEEEe-c-hhhcCCH---HHHH
Confidence 7999975 4 5677788889999999998742 4344445677889999998864 2 2222222 3445
Q ss_pred cccCCCcEEEEcCCC
Q 022834 82 EQICPGKGYIDMSTV 96 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~ 96 (291)
...++...++.+.-+
T Consensus 188 ~~~~~a~~vvl~GPS 202 (251)
T d2h1qa1 188 ELSRNARRITLVGPG 202 (251)
T ss_dssp HHTTTSSEEEEESTT
T ss_pred HhCCcCCEEEEECCC
Confidence 555455555544443
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.51 E-value=0.15 Score=39.45 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=32.2
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHH
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~ 41 (291)
|..+| |.+.+|.++++.|++.|+ .|.+.+|+.++++.+.+
T Consensus 4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~ 47 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS 47 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH
Confidence 45555 558999999999999996 57777999988887764
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=92.38 E-value=0.52 Score=37.31 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CCcccccccccccccCCCC-------C
Q 022834 164 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEK------SGLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYA-------P 229 (291)
Q Consensus 164 ~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~------~g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~-------~ 229 (291)
.....++.+.|++...++..++|++.+.++ .+++..++.++.+.+. ..+++++...+.+. .+.. +
T Consensus 138 ~~~~~i~~l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a~~-~~~~l~nl~~~~ 216 (297)
T d2pgda1 138 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFD-RNPGLQNLLLDD 216 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHH-HCTTCSCGGGSH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHHHH-hCCCccchhhcH
Confidence 567788999999999999999999999875 4688899999998774 35556554332221 1111 1
Q ss_pred Cc--ccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHh
Q 022834 230 AF--PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286 (291)
Q Consensus 230 ~~--~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 286 (291)
.+ .+......++.++..+-+.|+|+|.+.+....+........ ...++++.|+
T Consensus 217 ~~~~~l~~~~~~~r~~v~~ai~~gip~P~lssaL~y~~~~~~~~l----p~~lIQAqRD 271 (297)
T d2pgda1 217 FFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAML----PANLIQAQRD 271 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSSC----THHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccCCc----hhHHHHHHHH
Confidence 01 12223445678889999999999999998877765554322 3456666654
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.37 E-value=0.052 Score=41.04 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=28.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCc-EE--EEcCCcchhH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFK-VT--VWNRTLSKCD 37 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~-V~--~~~r~~~~~~ 37 (291)
+||.|||.|.-|+.++..|.+.|.+ |. .+|.+.+.+.
T Consensus 16 ~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~ 55 (209)
T d2vapa1 16 AKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLI 55 (209)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHH
T ss_pred CcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHh
Confidence 4899999999999999999988753 54 4465544443
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=92.34 E-value=0.068 Score=43.00 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=26.7
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcC
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNR 31 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r 31 (291)
||.|.| +|-+|+.++..|.++||+|+++|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 788884 599999999999999999999874
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.30 E-value=0.066 Score=39.68 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=29.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
+|.|||.|.-|..-|..+++.|.+|.++++..
T Consensus 7 ~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~ 38 (192)
T d1vdca1 7 RLCIVGSGPAAHTAAIYAARAELKPLLFEGWM 38 (192)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence 79999999999999999999999999998643
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.29 E-value=0.066 Score=40.67 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=29.4
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|.|||+|.-|..-|..+++.|++|.++++.+.
T Consensus 8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~~ 39 (233)
T d1v59a1 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK 39 (233)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 78999999999999999999999999987543
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=91.96 E-value=0.074 Score=39.26 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=29.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
+|.|||.|..|..-|..+++.|.+|+++++..
T Consensus 7 dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 7 KLLILGSGPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence 68999999999999999999999999998754
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=91.90 E-value=0.077 Score=42.36 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=29.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
.|.|||.|.-|...|..++++|++|+++++.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 37899999999999999999999999999864
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.83 E-value=0.09 Score=40.96 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=28.9
Q ss_pred EEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchh
Q 022834 3 VGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKC 36 (291)
Q Consensus 3 I~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~ 36 (291)
+++| |.+.+|.+++..|+++|++|.+.+|+.++.
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA 38 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence 5666 557799999999999999999999986653
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=91.81 E-value=0.081 Score=40.29 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=29.5
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|.|||.|.-|..-|..+++.|++|.++++.+.
T Consensus 9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~~ 40 (229)
T d1ojta1 9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYKT 40 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 78999999999999999999999999987643
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=91.74 E-value=1 Score=31.41 Aligned_cols=102 Identities=10% Similarity=-0.015 Sum_probs=61.5
Q ss_pred eEEEE-e--cC---hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCH-----HHH
Q 022834 2 EVGFL-G--LG---IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP-----AAA 70 (291)
Q Consensus 2 kI~iI-G--~G---~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~-----~~~ 70 (291)
||.|| + .| .|...++..|...|++|.+++.+....+. ....+.++|.+++.+|.. ..+
T Consensus 4 Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~-----------~~~~l~~~d~vi~Gspt~~~~~~~~~ 72 (152)
T d1e5da1 4 KVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQ-----------IMSEISDAGAVIVGSPTHNNGILPYV 72 (152)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHH-----------HHHHHHTCSEEEEECCCBTTBCCHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhh-----------hccchhhCCEEEEeccccCCccCchh
Confidence 56666 2 23 46778888888899999998765432221 122356899999999863 345
Q ss_pred HHHHhccCccccccCCCcEEEEcCC--CCHHHHHHHHHHHHhcCCcEEE
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMST--VDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~--~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
...+ +.+...-.+++.+...++ ........+.+.+.+.|...+.
T Consensus 73 ~~~l---~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v~ 118 (152)
T d1e5da1 73 AGTL---QYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPA 118 (152)
T ss_dssp HHHH---HHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCS
T ss_pred HHHH---HHhhccCCCCCEEEEEEeeCCCCccHHHHHHHHHHCCCEEec
Confidence 5555 333221124444333332 2455667788888888776653
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=91.70 E-value=0.11 Score=40.53 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=29.3
Q ss_pred eEEEEec-Ch--hhHHHHHHHHhCCCcEEEEcCCcchh
Q 022834 2 EVGFLGL-GI--MGKAISMNLLRNGFKVTVWNRTLSKC 36 (291)
Q Consensus 2 kI~iIG~-G~--mG~~la~~l~~~g~~V~~~~r~~~~~ 36 (291)
++.|.|+ |. +|.++|+.|++.|++|.+.+|+.++.
T Consensus 8 ~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~ 45 (268)
T d2h7ma1 8 RILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL 45 (268)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence 4556685 54 99999999999999999999987765
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=91.62 E-value=0.039 Score=45.09 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=26.4
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEc
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWN 30 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~ 30 (291)
|||.|.| +|-+|+.|+..|.++||+|.++.
T Consensus 3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~ 33 (346)
T d1oc2a_ 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV 33 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 7899997 69999999999999999866654
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=91.57 E-value=0.068 Score=41.75 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=24.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTV 28 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~ 28 (291)
+|.|=|.|++|...++.|.+.|.+|+.
T Consensus 38 ~v~IQGfGnVG~~~a~~L~e~Gakvva 64 (255)
T d1bgva1 38 TVALAGFGNVAWGAAKKLAELGAKAVT 64 (255)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 688899999999999999999998764
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.54 E-value=0.071 Score=40.19 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=28.8
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
+.|||.|.-|...|..+++.|.+|+++++.+
T Consensus 6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 7899999999999999999999999998753
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=91.51 E-value=0.081 Score=43.20 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=28.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNR 31 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r 31 (291)
.+.|||.|.-|..+|..|+++|++|.+..+
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 378999999999999999999999999975
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=91.50 E-value=0.032 Score=41.07 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVW 29 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~ 29 (291)
+|.|||.|..|..+|..|.+.|+++.+.
T Consensus 5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~ 32 (183)
T d1d7ya1 5 PVVVLGAGLASVSFVAELRQAGYQGLIT 32 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCSCEE
T ss_pred CEEEECccHHHHHHHHHHHhcCCceEEE
Confidence 6999999999999999999988775554
|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Clostridium beijerinckii [TaxId: 1520]
Probab=91.48 E-value=0.96 Score=30.92 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=64.9
Q ss_pred hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHH-------HHHHHHhccCcccc
Q 022834 10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA-------AALSVVFDKGGVLE 82 (291)
Q Consensus 10 ~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~-------~~~~v~~~~~~l~~ 82 (291)
.+...++..|.+.|++|.+++.+.. +..++ .++|.+++.+|+.. .+...+ +.+.+
T Consensus 14 ~vA~~ia~~l~~~g~~v~~~~~~~~--------------~~~~l-~~~~~~i~g~pt~~~g~~p~~~~~~~~---~~~~~ 75 (138)
T d5nula_ 14 KMAELIAKGIIESGKDVNTINVSDV--------------NIDEL-LNEDILILGCSAMTDEVLEESEFEPFI---EEIST 75 (138)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEGGGC--------------CHHHH-TTCSEEEEEECCBTTTBCCTTTHHHHH---HHHGG
T ss_pred HHHHHHHHHHHhcCCcceecccccc--------------ccccc-ccCCeEEEEEeccCCCCCChHHHHHHH---HHhCc
Confidence 4567888888889999998876421 33443 57899999987531 234444 33333
Q ss_pred ccCCCcEEEEc---CCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHh
Q 022834 83 QICPGKGYIDM---STVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVI 153 (291)
Q Consensus 83 ~l~~~~~vv~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~ 153 (291)
.+ +++.+... ........+.+.+.+...|...+..+. .+-..+++..+++.++-+.+
T Consensus 76 ~~-~gk~~~~f~s~g~~~~~~~~~~~~~l~~~G~~~v~~~~-------------~~~~~p~e~~~~~~~~g~~l 135 (138)
T d5nula_ 76 KI-SGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVETPL-------------IVQNEPDEAEQDCIEFGKKI 135 (138)
T ss_dssp GC-TTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSCCE-------------EEESSCGGGHHHHHHHHHHH
T ss_pred cC-CCCcEEEEEEecCCCCHHHHHHHHHHHHCCCEEecCcE-------------EECCCCcHHHHHHHHHHHHH
Confidence 34 34333222 223345667788888888776554331 12222445566666665554
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.37 E-value=0.077 Score=40.12 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=29.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~ 32 (291)
.|.|||+|..|...|..+++.|.+|.++++.
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 4889999999999999999999999999875
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.36 E-value=0.27 Score=36.17 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=47.6
Q ss_pred CeEEEEec--ChhhHHHHHHHHhCCCcEEEEcCCc-----chhHHHH----HC--CCcccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGL--GIMGKAISMNLLRNGFKVTVWNRTL-----SKCDELV----AH--GATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~--G~mG~~la~~l~~~g~~V~~~~r~~-----~~~~~l~----~~--g~~~~~~~~~~~~~~dvvii~v 64 (291)
.||++||= -++..++...++.-|.+++++.+.. +-.+.+. .. ...+.++++++++++|+|..-+
T Consensus 6 lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~~ 82 (185)
T d1dxha2 6 ISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDV 82 (185)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEeeh
Confidence 48999994 4899999999999999999998632 1112221 12 3556789999999999987655
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.23 E-value=0.1 Score=41.85 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=27.8
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNR 31 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r 31 (291)
.||.|.|+ |-+|+.++..|.+.||+|+++|+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 47889965 99999999999999999999876
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.12 E-value=0.1 Score=36.43 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=28.0
Q ss_pred eEEEEecChhhHHHHHHHHh----CCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLR----NGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~----~g~~V~~~~r~~~ 34 (291)
+|.|||.|..|.-+|..|++ .|.+|+++.+.+.
T Consensus 39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~ 75 (137)
T d1m6ia2 39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG 75 (137)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence 69999999999999998863 5889999987544
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=91.03 E-value=0.06 Score=42.42 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=26.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRT 32 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~ 32 (291)
|||.|.|+ |-+|+.+...|.+.|+.|.+..++
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~~ 33 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVHS 33 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEEECTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 99999985 999999999999998766554443
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.99 E-value=0.1 Score=39.74 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=28.9
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|.|||+|.-|...|..+++.|++|.++++.+
T Consensus 6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~~ 36 (235)
T d1h6va1 6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36 (235)
T ss_dssp EEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 7899999999999999999999999998654
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=90.93 E-value=0.1 Score=41.89 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=30.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
-|.|||.|.-|...|..++++|++|+++++.+.
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~ 57 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI 57 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 378999999999999999999999999998643
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=90.74 E-value=0.13 Score=37.42 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=28.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~ 32 (291)
.|.|||.|..|...|..+++.|.+|.++++.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 4789999999999999999999999999864
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.72 E-value=0.22 Score=31.84 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=29.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|||.|||.|.=-.+|+..|.+..++++++--|+
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~ 33 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNA 33 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCc
Confidence 999999999999999999999889988874443
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=90.63 E-value=0.11 Score=42.58 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=27.5
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcC
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNR 31 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r 31 (291)
+.|||.|.-|..+|..|+++|++|.+.++
T Consensus 5 VIVVGsG~aG~v~A~rLaeaG~~VlvLEa 33 (367)
T d1n4wa1 5 AVVIGTGYGAAVSALRLGEAGVQTLMLEM 33 (367)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence 67999999999999999999999999976
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.59 E-value=0.12 Score=41.63 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=27.2
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|+.+| |+|-+|..++..|.+.||+|+.++|..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 45555 569999999999999999999999853
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.34 E-value=0.14 Score=39.61 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=31.8
Q ss_pred Ce-EEEEec-ChhhHHHHHHHH---hCCCcEEEEcCCcchhHHH
Q 022834 1 ME-VGFLGL-GIMGKAISMNLL---RNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 1 mk-I~iIG~-G~mG~~la~~l~---~~g~~V~~~~r~~~~~~~l 39 (291)
|| |-|-|+ +.+|.++++.|+ +.|++|++.+|++++++.+
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~ 45 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL 45 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 66 655565 889999999986 5789999999998887654
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=90.32 E-value=0.34 Score=34.66 Aligned_cols=64 Identities=8% Similarity=0.133 Sum_probs=47.1
Q ss_pred CeEEEEec--ChhhHHHHHHHHhCCCcEEEEcCCcc-----hhHH---H-HHC--CCcccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGL--GIMGKAISMNLLRNGFKVTVWNRTLS-----KCDE---L-VAH--GATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~--G~mG~~la~~l~~~g~~V~~~~r~~~-----~~~~---l-~~~--g~~~~~~~~~~~~~~dvvii~v 64 (291)
.||++||= .++-.++...++.-|.++++..+..- ..+. . ... .+...++++++++++|+|..-.
T Consensus 4 ~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~ 80 (161)
T d1vlva2 4 VKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 80 (161)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred CEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence 38999994 57999999999999999999876321 1111 1 122 2456789999999999998765
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=90.23 E-value=0.13 Score=42.39 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=27.0
Q ss_pred CeEEEEe-cChhhHHHHHHHHh-CCCcEEEEcC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLR-NGFKVTVWNR 31 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~-~g~~V~~~~r 31 (291)
|||-|.| +|-+|+.++..|.+ .||+|+++|+
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~ 35 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS 35 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence 9999885 59999999999874 7999999874
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=90.14 E-value=0.13 Score=42.17 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=27.6
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCC
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~ 32 (291)
+.|||.|.-|+.+|.+|+++|++|.+..+-
T Consensus 5 ~IIVGsG~aG~v~A~rLae~g~~VlvLEaG 34 (360)
T d1kdga1 5 YIIVGAGPGGIIAADRLSEAGKKVLLLERG 34 (360)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence 679999999999999999999999998754
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.11 E-value=0.15 Score=38.31 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=28.1
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCC
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~ 32 (291)
+.|||.|..|...|..+++.|.+|.++++.
T Consensus 6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGARAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 789999999999999999999999999864
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.10 E-value=0.78 Score=33.83 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=62.6
Q ss_pred HHHHHHHhCCCcEEEEcCCcchh----HHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcE
Q 022834 14 AISMNLLRNGFKVTVWNRTLSKC----DELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKG 89 (291)
Q Consensus 14 ~la~~l~~~g~~V~~~~r~~~~~----~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~ 89 (291)
..+..|.+.||+|.+-.---..+ +...+.|+.+.++.+++..++|+|+-.- .|.. .+.- ......++++++
T Consensus 21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~-~P~~-~e~~---~~ei~~lk~g~~ 95 (194)
T d1l7da2 21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQ-RPMT-AEEG---TDEVALIKEGAV 95 (194)
T ss_dssp HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEE-CCCC-GGGS---CCGGGGSCTTCE
T ss_pred HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEec-CCcc-cccc---hhHhhhccCceE
Confidence 45677889999999863221211 3355679999999999999999776443 2211 1111 122345778998
Q ss_pred EEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 90 YIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 90 vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
++..- .|..-..+.+.+.++++..++.-..-
T Consensus 96 li~~l--~p~~~~~~~~~l~~~~it~~a~e~ip 126 (194)
T d1l7da2 96 LMCHL--GALTNRPVVEALTKRKITAYAMELMP 126 (194)
T ss_dssp EEEEC--CGGGCHHHHHHHHHTTCEEEEGGGCC
T ss_pred EEEec--ccccchhHHHHHHhcCceEEeeeccc
Confidence 88543 34333445556667788777665443
|
| >d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Intracellular protease species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.09 E-value=0.53 Score=33.63 Aligned_cols=92 Identities=15% Similarity=0.062 Sum_probs=50.8
Q ss_pred CeEEEE---ecChhhHHHH-HHHHhCCCcEEEEcCCcchhHHHHHCCCcccC--CHHHH-HhhCCEEEEecCCHHHH---
Q 022834 1 MEVGFL---GLGIMGKAIS-MNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--SPAEV-IKKCTITIGMLADPAAA--- 70 (291)
Q Consensus 1 mkI~iI---G~G~mG~~la-~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--~~~~~-~~~~dvvii~vp~~~~~--- 70 (291)
|||+|+ |.-.+=.... ..|.++|++|.++..+...... ..|..+.. +.++. ..+.|+++++=......
T Consensus 1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~~--~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~~~~~ 78 (166)
T d1g2ia_ 1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTITG--KHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRL 78 (166)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEEC--TTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTT
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEee--cCCcEEeccccHHHcCcccccEEEEecccchhhhcc
Confidence 888887 4434433333 4577899999999766543321 23544432 34443 34679888875332211
Q ss_pred -HHHHhccCccccccCCCcEEEEcCCCC
Q 022834 71 -LSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 71 -~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
+++. +-+.....+++.|...+++.
T Consensus 79 ~~~~~---~~l~~~~~~~k~i~aiC~G~ 103 (166)
T d1g2ia_ 79 NEKAV---SIARKMFSEGKPVASICHGP 103 (166)
T ss_dssp CHHHH---HHHHHHHHTTCCEEEETTTT
T ss_pred ChHHH---HHHHHHHhcCCeeeeccccc
Confidence 1222 22333444677777777664
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=90.07 E-value=0.13 Score=40.02 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=29.9
Q ss_pred ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 7 GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 7 G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
|.+.+|.+++..|++.|++|.+.+|+.++.+.+..
T Consensus 8 as~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ 42 (252)
T d1zmta1 8 VKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA 42 (252)
T ss_dssp TTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence 34669999999999999999999999888776643
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=89.96 E-value=0.13 Score=36.54 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=46.2
Q ss_pred CeEEEEec---ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGL---GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~---G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~v 64 (291)
+||++||= +++..+++..+++-|.++++..+.. .. ..+.......+.+++++++|+|..-.
T Consensus 4 l~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~--~~-~~~~~~~~~~~~~ea~~~aDviy~~r 67 (151)
T d2at2a2 4 LTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSE--WQ-DEENTFGTYVSMDEAVESSDVVMLLR 67 (151)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCch--hh-ccccceeEEEechhccccCceeeeeE
Confidence 58999996 6899999999999999998887642 11 11234566778889999999876543
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.94 E-value=0.11 Score=41.56 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=29.4
Q ss_pred eEEEEecChhhHHHHHHHHh--CCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~--~g~~V~~~~r~~~ 34 (291)
+|.|||+|.-|..-|..|++ .|++|+++++++.
T Consensus 52 ~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 86 (311)
T d2gjca1 52 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 86 (311)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence 58999999999999999995 4999999998754
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.91 E-value=0.16 Score=40.57 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=28.2
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
||-|.| +|.+|+.++..|.++||+|+..+|...
T Consensus 2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~ 35 (321)
T d1rpna_ 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 35 (321)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence 567775 599999999999999999999988643
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.78 E-value=0.14 Score=41.43 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=26.9
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcC
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNR 31 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r 31 (291)
||.|.| +|-+|+.|+..|.+.||+|++.|+
T Consensus 4 KILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 698885 599999999999999999999864
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.74 E-value=0.17 Score=37.98 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=28.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~ 32 (291)
.+.|||+|..|...|..+++.|.+|.++++.
T Consensus 5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~ 35 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG 35 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence 3789999999999999999999999999875
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.66 E-value=0.39 Score=38.77 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=25.0
Q ss_pred EEEE-ecChhhHHHHHHHHhCCCcEEEEcC
Q 022834 3 VGFL-GLGIMGKAISMNLLRNGFKVTVWNR 31 (291)
Q Consensus 3 I~iI-G~G~mG~~la~~l~~~g~~V~~~~r 31 (291)
|.|. |+|-+|+.++..|.++||+|+++|+
T Consensus 4 ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~ 33 (347)
T d1z45a2 4 VLVTGGAGYIGSHTVVELIENGYDCVVADN 33 (347)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence 4455 5699999999999999999999875
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=89.66 E-value=0.15 Score=41.72 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=27.4
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcC
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNR 31 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r 31 (291)
+-|||.|.-|..+|..|+++|++|++..+
T Consensus 10 vIVVGsG~aG~v~A~rLaeaG~~VlvLEa 38 (370)
T d3coxa1 10 ALVIGSGYGGAVAALRLTQAGIPTQIVEM 38 (370)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 67999999999999999999999999986
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.65 E-value=0.16 Score=42.03 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=29.7
Q ss_pred eEEEEecChhhHHHHHHHHh------CCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLR------NGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~------~g~~V~~~~r~~~ 34 (291)
-|.|||+|.-|++.|..|++ +|++|.++++...
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~ 72 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence 48899999999999999997 8999999998754
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=89.45 E-value=0.57 Score=32.69 Aligned_cols=104 Identities=8% Similarity=0.026 Sum_probs=61.1
Q ss_pred CeEEEE---ecC---hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHH-----H
Q 022834 1 MEVGFL---GLG---IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA-----A 69 (291)
Q Consensus 1 mkI~iI---G~G---~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~-----~ 69 (291)
+|+.|| ..| .|...++..+.+.|++|.+++.+....+. ....+.++|.|++.+|... .
T Consensus 3 ~K~lIvY~S~~GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~-----------~~~~~~~~d~ii~Gspt~~g~~~~~ 71 (149)
T d1ycga1 3 AKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRND-----------VIKEILDARAVLVGSPTINNDILPV 71 (149)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHH-----------HHHHHHHCSEEEEECCCBTTBCCGG
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHHhcCCeeEEEEccccchHH-----------HhhhhhhCCeEEEEeecccCCCCHH
Confidence 356666 234 47778999999999999998765332221 1223457999999998532 3
Q ss_pred HHHHHhccCccccccCCCcEEEEc-C-CCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDM-S-TVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~-s-~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
++..+ +.+...-.+++.+... | .......+.+...+...|...+..
T Consensus 72 ~~~~l---~~l~~~~~~~k~~~~fgs~g~~g~a~~~l~~~l~~~g~~~v~~ 119 (149)
T d1ycga1 72 VSPLL---DDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAE 119 (149)
T ss_dssp GHHHH---HHHHHHCCSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCS
T ss_pred HHHHH---HHHhccccCCCEEEEEecccCCchhHHHHHHHHHHCCCEEecc
Confidence 44544 3333222234433322 2 223445677888888888776543
|
| >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Megasphaera elsdenii [TaxId: 907]
Probab=89.32 E-value=2 Score=29.17 Aligned_cols=91 Identities=11% Similarity=0.000 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCH------H-HHHHHHhccCcccc
Q 022834 10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP------A-AALSVVFDKGGVLE 82 (291)
Q Consensus 10 ~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~------~-~~~~v~~~~~~l~~ 82 (291)
.|...++..|.+.|++|.+++.+. .+++++ .++|.+++.+|+. . ..+..+ +.+..
T Consensus 15 ~~A~~ia~~l~~~g~~v~~~~~~~--------------~~~~~l-~~~d~ii~g~pT~~~g~~p~~~~~~~~---~~~~~ 76 (137)
T d2fz5a1 15 AMANEIEAAVKAAGADVESVRFED--------------TNVDDV-ASKDVILLGCPAMGSEELEDSVVEPFF---TDLAP 76 (137)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETTS--------------CCHHHH-HTCSEEEEECCCBTTTBCCHHHHHHHH---HHHGG
T ss_pred HHHHHHHHHHHhcCCceEEeehhh--------------HHHhhh-hccceEEEEEecccCCcCChhHHHHHH---HHhcc
Confidence 467788888888999999987642 134454 4789999998742 1 233344 33333
Q ss_pred ccCCCcEE-EEcC--CCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 83 QICPGKGY-IDMS--TVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 83 ~l~~~~~v-v~~s--~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.+ +++.+ +-.| .........+.+.+.+.|...+..+
T Consensus 77 ~~-~gk~~~~fgs~g~~~~~a~~~l~~~l~~~G~~~v~~~ 115 (137)
T d2fz5a1 77 KL-KGKKVGLFGSYGWGSGEWMDAWKQRTEDTGATVIGTA 115 (137)
T ss_dssp GC-SSCEEEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cc-CCCeEEEEEecCCCcCHHHHHHHHHHHHCCCEEeece
Confidence 34 34332 2222 2345667778888888888777544
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=89.30 E-value=0.13 Score=37.53 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=23.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCC---CcEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG---FKVTVW 29 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g---~~V~~~ 29 (291)
|||||=|+|++|..+.+.+.+.. .+|...
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaI 32 (172)
T d1rm4a1 1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVI 32 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEE
Confidence 79999999999999999887543 455544
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=89.27 E-value=0.14 Score=42.42 Aligned_cols=30 Identities=40% Similarity=0.530 Sum_probs=25.3
Q ss_pred CeEEEEe-------cChhh---HHHHHHHHhCCCcEEEEc
Q 022834 1 MEVGFLG-------LGIMG---KAISMNLLRNGFKVTVWN 30 (291)
Q Consensus 1 mkI~iIG-------~G~mG---~~la~~l~~~g~~V~~~~ 30 (291)
|||.+|+ .|.+| ..|+..|++.||+|+++.
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvt 40 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT 40 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 9999988 37665 667889999999999885
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=89.21 E-value=0.13 Score=42.08 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=26.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEE-EEcC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVT-VWNR 31 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~-~~~r 31 (291)
|||.|.|+ |-+|+.++..|.+.||+|+ +.|+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~ 33 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK 33 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 99999955 9999999999999999854 4554
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.02 E-value=0.16 Score=38.15 Aligned_cols=29 Identities=21% Similarity=0.484 Sum_probs=26.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW 29 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~ 29 (291)
|||+|+|.+..|..+...|.++||+|..+
T Consensus 1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~V 29 (203)
T d2bw0a2 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGV 29 (203)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCcEEEE
Confidence 99999999999999999999999998743
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.99 E-value=0.21 Score=38.25 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=28.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+|-|.|+ |.+|.+++..|++.|++|.+.+++++
T Consensus 4 ~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~ 37 (236)
T d1dhra_ 4 RVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN 37 (236)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 5667766 78999999999999999999988654
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=88.85 E-value=0.21 Score=36.38 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=23.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCC----CcEEEEc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWN 30 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g----~~V~~~~ 30 (291)
|||||=|+|++|..+.+.+.+.+ .+|...+
T Consensus 2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN 35 (173)
T d1obfo1 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN 35 (173)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence 79999999999999999987643 3555444
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=88.77 E-value=0.14 Score=40.87 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=27.3
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRT 32 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~ 32 (291)
+||.|.|+ |.+|+.++..|.++|+.|++.++.
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~ 35 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR 35 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence 47888855 999999999999999998877653
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.47 E-value=0.5 Score=33.47 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=47.6
Q ss_pred eEEEEec---ChhhHHHHHHHHhCCCcEEEEcCCcc-----hhHHHHHCC--CcccCCHHHHHhhCCEEEEec
Q 022834 2 EVGFLGL---GIMGKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHG--ATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 2 kI~iIG~---G~mG~~la~~l~~~g~~V~~~~r~~~-----~~~~l~~~g--~~~~~~~~~~~~~~dvvii~v 64 (291)
||+|||= +++..++...+..-|.+++++.+..- ..+.+.+.+ ...+.+++++++++|+|..-.
T Consensus 6 ~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~ 78 (157)
T d1ml4a2 6 KIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTR 78 (157)
T ss_dssp EEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECC
T ss_pred EEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeec
Confidence 7999998 68899999999999999998875322 223334444 345778999999999877655
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=88.38 E-value=0.19 Score=37.65 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=28.8
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
+.|||.|.-|..-|..+++.|++|.++++..
T Consensus 6 viIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 7899999999999999999999999998754
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=88.38 E-value=0.28 Score=39.63 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=30.0
Q ss_pred eEEEE-ecC---hhhHHHHHHHHhCCCcEEEEcCCcchhH
Q 022834 2 EVGFL-GLG---IMGKAISMNLLRNGFKVTVWNRTLSKCD 37 (291)
Q Consensus 2 kI~iI-G~G---~mG~~la~~l~~~g~~V~~~~r~~~~~~ 37 (291)
||++| |+| .+|.++|..|++.|.+|.+.+++.....
T Consensus 3 kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~ 42 (329)
T d1uh5a_ 3 DICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNI 42 (329)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHH
T ss_pred cEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhh
Confidence 68877 866 6999999999999999999887665433
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.36 E-value=0.19 Score=37.51 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=26.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCc--EEEEcCCc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFK--VTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~--V~~~~r~~ 33 (291)
+||.|.|+ |.+|..++..|.+.|+. |....|++
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~ 38 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA 38 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence 48999987 99999999999999984 55555543
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.29 E-value=0.22 Score=40.15 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=26.2
Q ss_pred eEEEE-ecChhhHHHHHHHHhCCCcEEEEcC
Q 022834 2 EVGFL-GLGIMGKAISMNLLRNGFKVTVWNR 31 (291)
Q Consensus 2 kI~iI-G~G~mG~~la~~l~~~g~~V~~~~r 31 (291)
+|-|. |+|-+|+.++..|.+.||+|++.|+
T Consensus 18 ~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~ 48 (341)
T d1sb8a_ 18 VWLITGVAGFIGSNLLETLLKLDQKVVGLDN 48 (341)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 45566 5699999999999999999999986
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=88.28 E-value=0.077 Score=42.71 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.7
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEE
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVT 27 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~ 27 (291)
|||.|.| +|-+|+.++..|.+.||+|.
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~ 28 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDV 28 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCcc
Confidence 9999995 59999999999999998643
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=88.25 E-value=0.23 Score=38.42 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=28.4
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCC
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~ 32 (291)
+.|||.|.-|...|..+++.|.+|.+++++
T Consensus 4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~ 33 (259)
T d1onfa1 4 LIVIGGGSGGMAAARRAARHNAKVALVEKS 33 (259)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 689999999999999999999999999975
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=88.13 E-value=0.22 Score=32.92 Aligned_cols=32 Identities=9% Similarity=-0.106 Sum_probs=26.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~ 32 (291)
++|.|||.|.-|.-++..|++.+.++++..|.
T Consensus 33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r 64 (107)
T d2gv8a2 33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLL 64 (107)
T ss_dssp CCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred CeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence 58999999999999999999877666555443
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=87.82 E-value=0.32 Score=35.13 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=30.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEE-cC--CcchhHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVW-NR--TLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~-~r--~~~~~~~l~~ 41 (291)
||||=|.|++|..+.+.+.+.+.+|... |. +.+....+.+
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlk 44 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFK 44 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHH
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHh
Confidence 8999999999999999999888887766 43 2344444444
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.76 E-value=0.16 Score=38.64 Aligned_cols=39 Identities=15% Similarity=-0.008 Sum_probs=32.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~ 42 (291)
||-.+|||. | ..+..|++.|++|+.+|.+++.++.+.+.
T Consensus 48 rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~ 86 (229)
T d2bzga1 48 RVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFTE 86 (229)
T ss_dssp EEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred EEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Confidence 788999998 3 56788899999999999999988876653
|
| >d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Hypothetical protein PA1204 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.17 E-value=3.8 Score=29.17 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=70.7
Q ss_pred CeEEEE-ec---ChhhHHHHHHHHh---CCCcEEEEcCCcch--hHHHHHCCCc-ccCCHHHHHhhCCEEEEecCCH---
Q 022834 1 MEVGFL-GL---GIMGKAISMNLLR---NGFKVTVWNRTLSK--CDELVAHGAT-VGGSPAEVIKKCTITIGMLADP--- 67 (291)
Q Consensus 1 mkI~iI-G~---G~mG~~la~~l~~---~g~~V~~~~r~~~~--~~~l~~~g~~-~~~~~~~~~~~~dvvii~vp~~--- 67 (291)
|||.+| |. |+....++..+.+ .|++|.++|...-. .....+.+.. ......+.+..+|.+|+++|..
T Consensus 1 MKIl~i~GS~r~~s~s~~l~~~~~~~~~~~~ev~~idl~dlP~~~~d~~~~~~~~~~~~~~~~i~~aD~iii~sP~y~~s 80 (174)
T d1rtta_ 1 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYS 80 (174)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTE
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecccCCCccccccccCCCHHHHHHHHHhhcCCeEEEEccchhcc
Confidence 898866 54 3334555555543 47889999864210 0111111211 1122345567899999999854
Q ss_pred --HHHHHHHhccCccc----cccCCCcEEEEc--CCC---CHHHHHHHHHHHHhcCCcEEEcc-c-CCChHh--hcccce
Q 022834 68 --AAALSVVFDKGGVL----EQICPGKGYIDM--STV---DHETSIKISRAITSKGGHFLEAP-V-SGSKQP--AETGQL 132 (291)
Q Consensus 68 --~~~~~v~~~~~~l~----~~l~~~~~vv~~--s~~---~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~~g~~ 132 (291)
..++..+ +.+. +.+ .++.+..+ |.+ .......+...+...+...+..| + .+.... ...|++
T Consensus 81 ~~~~lKn~i---D~l~~~~~~~~-~gK~~~~i~~sgG~~~~~~~~~~l~~~l~~~g~~~i~~~~~~v~~~~~~fd~~g~l 156 (174)
T d1rtta_ 81 MAGVLKNAI---DWASRPPEQPF-SGKPAAILGASAGRFGTARAQYHLRQTLVFLDVHPLNKPEVMISSAQNAFDAQGRL 156 (174)
T ss_dssp ECHHHHHHH---HHHTCSSSCTT-TTCEEEEEEECSSTTTTHHHHHHHHHHHHHHTCEECCSSCEEECSGGGTBCSTTCB
T ss_pred ccHHHHHHH---HHHhccccccc-CCCEEEEEEECCCccchHHHHHHHHHHHHHCCCEEcCCCEEEEechHhccCCCCCc
Confidence 2466665 3221 223 45544433 332 23344445555555565554322 1 111111 122332
Q ss_pred EEEecCCHHHHHHHHHHHHHh
Q 022834 133 VILSAGEKALYDEAISALNVI 153 (291)
Q Consensus 133 ~~~~~g~~~~~~~~~~ll~~~ 153 (291)
.+++..++++++++.+
T Consensus 157 -----~de~~~~~l~~~~~~l 172 (174)
T d1rtta_ 157 -----LDDKARELIQQQLQAL 172 (174)
T ss_dssp -----CCHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHh
Confidence 1566666777776654
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.12 E-value=0.32 Score=36.35 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=27.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEE-EcC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTV-WNR 31 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~-~~r 31 (291)
|||.++|.+.+|......|.++||+|.. +.+
T Consensus 1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~Vvt~ 32 (203)
T d2blna2 1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTH 32 (203)
T ss_dssp CEEEEEECHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CeEEEEecCHHHHHHHHHHHHCCCCEEEEEcC
Confidence 9999999999999999999999999864 443
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=86.89 E-value=0.51 Score=38.11 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=31.8
Q ss_pred CeEEEEecChh-----hHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCC
Q 022834 1 MEVGFLGLGIM-----GKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44 (291)
Q Consensus 1 mkI~iIG~G~m-----G~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 44 (291)
|||.|.+.|.= ..++|..|.++||+|++... +...+.+.+.|.
T Consensus 1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~~-~~~~~~v~~~g~ 48 (401)
T d1iira_ 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAP-PDCAERLAEVGV 48 (401)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEEC-GGGHHHHHHTTC
T ss_pred CEEEEECCCChhHHHHHHHHHHHHHHCCCEEEEEeC-cchHHHHHHcCC
Confidence 99999988863 45799999999999998873 344444544453
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.64 E-value=1.1 Score=33.08 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=28.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCC---cEEEEcCCcchhH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCD 37 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~---~V~~~~r~~~~~~ 37 (291)
+|-|||.|.-|+.++..|.+.+. +....|.+.+.+.
T Consensus 3 ~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~ 41 (198)
T d1ofua1 3 VIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALK 41 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGS
T ss_pred eEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHh
Confidence 58899999999999999999875 3445566655543
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.60 E-value=0.32 Score=36.17 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=26.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEE--cCCcch
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVW--NRTLSK 35 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~--~r~~~~ 35 (291)
+|-|||.|..|..++..|.+.|. .|.++ |.+.++
T Consensus 3 ~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~ 39 (198)
T d1rq2a1 3 VIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQA 39 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHH
T ss_pred eEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHH
Confidence 68899999999999999999875 35444 554443
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=86.56 E-value=0.26 Score=39.40 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=29.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
.|.|||.|.-|..-|..++++|.+|.++++.+
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~ 52 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAP 52 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 38899999999999999999999999998764
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=86.53 E-value=0.33 Score=35.36 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=34.6
Q ss_pred EEEE-ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCC
Q 022834 3 VGFL-GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44 (291)
Q Consensus 3 I~iI-G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 44 (291)
|.|. |+|.+|..-.......|.+|+...+++++.+.+.+.|.
T Consensus 35 vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGa 77 (177)
T d1o89a2 35 IVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA 77 (177)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE
T ss_pred EEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcc
Confidence 4444 56999999999888899999999999999887776554
|
| >d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Molybdenum cofactor biosynthesis proteins superfamily: Molybdenum cofactor biosynthesis proteins family: MoeA central domain-like domain: Gephyrin, domain 5 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.14 E-value=0.77 Score=32.46 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=38.0
Q ss_pred CeEEEEecCh-----------------hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe
Q 022834 1 MEVGFLGLGI-----------------MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~G~-----------------mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~ 63 (291)
+||+||-.|. =+..+...|.+.|++|.-+..-++..+.+.+ ...++++++|+||++
T Consensus 1 PrV~iistG~El~~~~~~~~~g~i~dsN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~-------~l~~~~~~~Dliitt 73 (155)
T d2ftsa3 1 PVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLN-------ALNEGISRADVIITS 73 (155)
T ss_dssp CCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHH-------HHHHHHHHCSEEEEE
T ss_pred CEEEEEeCChhccCCCCcCCCCcEeechHHHHHHHhcccccceEEEEEecCchhHHHH-------HHHHhhcccCEEEEe
Confidence 4788887773 2567888888888888766554444454432 455667789988875
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=85.94 E-value=4.6 Score=31.68 Aligned_cols=143 Identities=12% Similarity=0.149 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHhccce--EeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-
Q 022834 139 EKALYDEAISALNVIGKKA--FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK------SGLDPRTLLDVLDLGG- 209 (291)
Q Consensus 139 ~~~~~~~~~~ll~~~g~~~--~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~------~g~~~~~~~~~~~~~~- 209 (291)
.++........+....... ...+.......+|.+.|.+...++..++|++.+.++ .+++..++.++.+.+-
T Consensus 116 ~k~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~Al~~~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCI 195 (300)
T d1pgja1 116 YKTERQANASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCI 195 (300)
T ss_dssp THHHHHHHHHHSTTTTCCCCCCCSCCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSST
T ss_pred ChHHHHHHHhhcccccCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCce
Confidence 3443344444444333222 222335677889999999999999999999999875 4688899999888774
Q ss_pred CCcccccccccccccCCCC-----CCcccccHHH---H-HHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHH
Q 022834 210 IANPMFKGKGPTMLQSNYA-----PAFPLKHQQK---D-MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAV 280 (291)
Q Consensus 210 ~~s~~~~~~~~~~~~~~~~-----~~~~~~~~~~---d-~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~ 280 (291)
..+.+++...+... .+.. ..+ .....+ . .+.+...+.+.|+|+|.+.+...-+....... .....+
T Consensus 196 IRS~LL~~i~~a~~-~~~~l~~l~~~f-~~~~~~~~~~~~r~v~~~~~~~gip~P~lssaL~y~~~~~~~~---l~~anL 270 (300)
T d1pgja1 196 LQGYLLKPMTEAFE-KNPNISNLMCAF-QTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPT---LKYGQL 270 (300)
T ss_dssp TCBTTHHHHHHHHH-HCTTCSCTTGGG-HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCSC---CTHHHH
T ss_pred eeHHHHHHHHHHhh-cCCccchhhHHH-HHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC---CchhHH
Confidence 35555544322111 1110 111 111111 1 24455556788999999999877655444322 122357
Q ss_pred HHHHHh
Q 022834 281 FEVVKD 286 (291)
Q Consensus 281 ~~~~~~ 286 (291)
+++.|+
T Consensus 271 IQAqRD 276 (300)
T d1pgja1 271 VSLQRD 276 (300)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776664
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=85.62 E-value=2.2 Score=29.81 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=27.8
Q ss_pred Ce-EEEEec-ChhhHHHHHHHHhC--CCcEEEE--cCCcchhHH
Q 022834 1 ME-VGFLGL-GIMGKAISMNLLRN--GFKVTVW--NRTLSKCDE 38 (291)
Q Consensus 1 mk-I~iIG~-G~mG~~la~~l~~~--g~~V~~~--~r~~~~~~~ 38 (291)
|| |+|+|. |++|..-..-+.+. .|+|... ++|-+.+..
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~ 44 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVE 44 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHH
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHH
Confidence 54 999987 99999999998875 3676654 455554443
|
| >d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Azobenzene reductase species: Bacillus subtilis [TaxId: 1423]
Probab=85.60 E-value=0.61 Score=33.44 Aligned_cols=73 Identities=5% Similarity=-0.051 Sum_probs=39.7
Q ss_pred CeEEEE-ec---ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH----HCCCcccCCHHHHHhhCCEEEEecCCH-----
Q 022834 1 MEVGFL-GL---GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV----AHGATVGGSPAEVIKKCTITIGMLADP----- 67 (291)
Q Consensus 1 mkI~iI-G~---G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~----~~g~~~~~~~~~~~~~~dvvii~vp~~----- 67 (291)
|||.+| |. +.-...++..+.+ ++++.++|-..-.+..+. ...........+.+.++|.+|+++|..
T Consensus 1 MKIl~I~GS~r~~s~t~~l~~~~~~-~~~~~~idl~~~~lp~~~~~~~~~~~~~~~~l~~~i~~aD~vIi~sP~Y~~~~~ 79 (171)
T d1nni1_ 1 MNMLVINGTPRKHGRTRIAASYIAA-LYHTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYHSGMS 79 (171)
T ss_dssp CCEEEEECCCCTTCHHHHHHHHHHH-HHTCEEEETTTSCCCCCCCCHHHHTSHHHHHHHHHHHHCSEEEEEEECBTTBCC
T ss_pred CEEEEEECCCCCcChHHHHHHHHHh-hCCceEEEcccCCCCCccccccccccHHHHHHHHHhhccCceEEechHHhcccc
Confidence 888877 55 4456666666654 466666664321111000 000001112345567899999999863
Q ss_pred HHHHHHH
Q 022834 68 AAALSVV 74 (291)
Q Consensus 68 ~~~~~v~ 74 (291)
..++..+
T Consensus 80 ~~lKn~i 86 (171)
T d1nni1_ 80 GALKNAL 86 (171)
T ss_dssp HHHHHHH
T ss_pred hhHhHHH
Confidence 3566666
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=85.59 E-value=0.53 Score=35.04 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=26.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW 29 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~ 29 (291)
|||.|+|.+..+..+...|.++|++|..+
T Consensus 4 mKI~f~G~~~~~~~~L~~L~~~~~~i~~V 32 (206)
T d1fmta2 4 LRIIFAGTPDFAARHLDALLSSGHNVVGV 32 (206)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999996643
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=85.47 E-value=0.31 Score=35.08 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=25.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWN 30 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~ 30 (291)
|||||=|.|++|..+.+.+.+.. .+|...+
T Consensus 2 ikigINGFGRIGR~v~R~~~~~~~i~ivaIN 32 (166)
T d1gado1 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIN 32 (166)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred eEEEEECCcHHHHHHHHHHhhCCCeEEEEEe
Confidence 79999999999999999988763 5666554
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.46 E-value=1.2 Score=32.31 Aligned_cols=84 Identities=19% Similarity=0.140 Sum_probs=51.4
Q ss_pred EEEEe-cChhhHHHHHHHHhCCCc-EEEEcCCcchhHHHH-HCCCcc-----cCCHHHHHhh-----CCEEEEecCCHHH
Q 022834 3 VGFLG-LGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELV-AHGATV-----GGSPAEVIKK-----CTITIGMLADPAA 69 (291)
Q Consensus 3 I~iIG-~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~-~~g~~~-----~~~~~~~~~~-----~dvvii~vp~~~~ 69 (291)
|.|.| +|.+|..........|.+ |...+.++++...+. +.|... .++..+.++. +|+|+-++. ...
T Consensus 34 VLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG-g~~ 112 (187)
T d1vj1a2 34 MVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG-GDI 112 (187)
T ss_dssp EEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-HHH
T ss_pred EEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-chh
Confidence 55666 699999999998888876 444566666666555 445432 2234444433 889998884 455
Q ss_pred HHHHHhccCccccccCCCcEEEEcC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMS 94 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s 94 (291)
++..+ ..++++..++.+.
T Consensus 113 ~~~~~-------~~l~~~G~iv~~G 130 (187)
T d1vj1a2 113 SNTVI-------SQMNENSHIILCG 130 (187)
T ss_dssp HHHHH-------TTEEEEEEEEEC-
T ss_pred HHHHh-------hhccccccEEEec
Confidence 55555 2334545555443
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=85.33 E-value=0.84 Score=33.21 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=46.8
Q ss_pred CeEEEEecC--hhhHHHHHHHHhCCCcEEEEcCCc----chh-H---H-HHHCC--CcccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLG--IMGKAISMNLLRNGFKVTVWNRTL----SKC-D---E-LVAHG--ATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G--~mG~~la~~l~~~g~~V~~~~r~~----~~~-~---~-l~~~g--~~~~~~~~~~~~~~dvvii~v 64 (291)
.||+++|=| +|..+++..++.-|.+++++.+.. +.. + . ....| ...+.+.++++.++|+|..-+
T Consensus 6 l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 82 (183)
T d1duvg2 6 MTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDV 82 (183)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECC
T ss_pred CEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEEe
Confidence 489999955 799999999999899999987631 111 1 1 12223 446788999999999988765
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.94 E-value=0.26 Score=38.98 Aligned_cols=94 Identities=15% Similarity=0.238 Sum_probs=53.9
Q ss_pred eEEEEecChhhHHHHHHHHhC----CC-------cEEEEcCCc----ch---hHH----HHHCC-CcccCCHHHHHh--h
Q 022834 2 EVGFLGLGIMGKAISMNLLRN----GF-------KVTVWNRTL----SK---CDE----LVAHG-ATVGGSPAEVIK--K 56 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~----g~-------~V~~~~r~~----~~---~~~----l~~~g-~~~~~~~~~~~~--~ 56 (291)
||.|+|+|.-|..++..|... |. +++++|+.- ++ .+. +.... -....++.++++ +
T Consensus 27 kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~k 106 (294)
T d1pj3a1 27 KILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILK 106 (294)
T ss_dssp CEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHC
T ss_pred EEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhcC
Confidence 799999999999999987653 32 588888732 11 110 00001 112246777765 5
Q ss_pred CCEEEEecCCH-HHHHHHHhccCccccccCCCcEEEEcCCCCHH
Q 022834 57 CTITIGMLADP-AAALSVVFDKGGVLEQICPGKGYIDMSTVDHE 99 (291)
Q Consensus 57 ~dvvii~vp~~-~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~ 99 (291)
++++|-+...+ .-.++++ +.+.. ..++.+|.-+||-.|.
T Consensus 107 ptvliG~S~~~g~ft~evi---~~Ma~-~~~~PIIFaLSNPt~~ 146 (294)
T d1pj3a1 107 PSTIIGVAGAGRLFTPDVI---RAMAS-INERPVIFALSNPTAQ 146 (294)
T ss_dssp CSEEEECCCSSCCSCHHHH---HHHHH-HCSSCEEEECCSSGGG
T ss_pred CceEEEecCCCCcCCHHHH---HHHHh-cCCCcEEEEccCCCCc
Confidence 67776665221 2234454 33333 3366788888877553
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=84.87 E-value=0.45 Score=32.47 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=54.7
Q ss_pred eEEEEecCh-----------hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCC-EEEEecCCHHH
Q 022834 2 EVGFLGLGI-----------MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCT-ITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~G~-----------mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~d-vvii~vp~~~~ 69 (291)
||.|||.|. .+...+..|.+.|+++.+++.||+.+. ++.+ -+| ++|..+ +.+.
T Consensus 9 kvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVs----------td~d----~aD~lYfePl-t~e~ 73 (127)
T d1a9xa3 9 SILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIM----------TDPE----MADATYIEPI-HWEV 73 (127)
T ss_dssp EEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGG----------GCGG----GSSEEECSCC-CHHH
T ss_pred EEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhh----------cChh----hcceeeeecC-CHHH
Confidence 799999985 477888889999999999999987542 2322 234 455577 7677
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHh
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS 110 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~ 110 (291)
+.+++. .-+++.++. +....+...+...+.+
T Consensus 74 v~~Ii~-------~E~pd~il~---~~GGQtalnla~~L~~ 104 (127)
T d1a9xa3 74 VRKIIE-------KERPDAVLP---TMGGQTALNCALELER 104 (127)
T ss_dssp HHHHHH-------HHCCSEEEC---SSSHHHHHHHHHHHHH
T ss_pred HHHHHH-------HhCcCCeEE---EeeeehHhHHHHHHHH
Confidence 777772 123445544 3344454555554443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=84.80 E-value=0.24 Score=38.40 Aligned_cols=105 Identities=19% Similarity=0.185 Sum_probs=61.2
Q ss_pred CeEEEEecCh--hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC----C----Ccc-cCCHHHHH--hhCCEEEEecCCH
Q 022834 1 MEVGFLGLGI--MGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----G----ATV-GGSPAEVI--KKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~--mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g----~~~-~~~~~~~~--~~~dvvii~vp~~ 67 (291)
++|.=+|+|. +...+++.+... -.|+.+|++++.++.+.+. + +.. ..+..+.. ...|.|++-+|++
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p~p 165 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPDP 165 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCSCG
T ss_pred CEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCCch
Confidence 3566677654 455556555433 4799999999888766542 1 111 12222222 2479999989887
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
+.. + +.+...+++|..++..+. .....++..+.+.+.|+
T Consensus 166 ~~~---l---~~~~~~LKpGG~lv~~~P-~i~Qv~~~~~~l~~~gf 204 (250)
T d1yb2a1 166 WNH---V---QKIASMMKPGSVATFYLP-NFDQSEKTVLSLSASGM 204 (250)
T ss_dssp GGS---H---HHHHHTEEEEEEEEEEES-SHHHHHHHHHHSGGGTE
T ss_pred HHH---H---HHHHHhcCCCceEEEEeC-CcChHHHHHHHHHHCCC
Confidence 643 3 344456677776664322 33455666666666664
|
| >d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=84.53 E-value=2.3 Score=31.14 Aligned_cols=93 Identities=11% Similarity=0.120 Sum_probs=56.4
Q ss_pred HHHHHHHhCCCcEEEEcCCcchh----HHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcE
Q 022834 14 AISMNLLRNGFKVTVWNRTLSKC----DELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKG 89 (291)
Q Consensus 14 ~la~~l~~~g~~V~~~~r~~~~~----~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~ 89 (291)
.-+..|.+.||+|.+-.---... +...+.|+.+.++.+++. ++|+|+ .+..+. .+ + ...++++++
T Consensus 21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diil-kv~~p~-~~-------e-~~~lk~~~~ 89 (193)
T d1pjca2 21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVV-KVKEPL-PA-------E-YDLMQKDQL 89 (193)
T ss_dssp HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEE-CSSCCC-GG-------G-GGGCCTTCE
T ss_pred HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEE-EeccCC-HH-------H-HHhhhcCce
Confidence 35677888999999863222221 234445899988887776 689766 552322 11 1 234678898
Q ss_pred EEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 90 YIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 90 vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
++... .|....++.+.+.++++..++.-
T Consensus 90 li~~l--~p~~~~ell~~l~~~~it~~s~E 117 (193)
T d1pjca2 90 LFTYL--HLAAARELTEQLMRVGLTAIAYE 117 (193)
T ss_dssp EEECC--CGGGCHHHHHHHHHHTCEEEEGG
T ss_pred EEEec--CcccchHHHHHHHHcCCEEEEee
Confidence 88543 34333455555667788777654
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=84.31 E-value=0.42 Score=37.59 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=27.4
Q ss_pred EEEEecC---hhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 3 VGFLGLG---IMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 3 I~iIG~G---~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
+.|-|++ .+|.+++..|++.|.+|.+.+|+++.
T Consensus 11 alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~ 46 (297)
T d1d7oa_ 11 AFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPAL 46 (297)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHH
T ss_pred EEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhh
Confidence 4455875 59999999999999999999887543
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=83.90 E-value=0.61 Score=32.92 Aligned_cols=63 Identities=16% Similarity=0.037 Sum_probs=43.7
Q ss_pred CeEEEEec---ChhhHHHHHHHHhCCCcEEEEcCCcc---hhHHHHHC--CCcccCCHHHHHhhCCEEEEe
Q 022834 1 MEVGFLGL---GIMGKAISMNLLRNGFKVTVWNRTLS---KCDELVAH--GATVGGSPAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~---G~mG~~la~~l~~~g~~V~~~~r~~~---~~~~l~~~--g~~~~~~~~~~~~~~dvvii~ 63 (291)
.||+|||= +++..++...+++-|.+++++...+. .-+.+... .+...+++.++++++|+|..-
T Consensus 4 l~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~ 74 (153)
T d1pg5a2 4 LVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT 74 (153)
T ss_dssp CEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred CEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence 48999997 55899999999999998765543211 11112222 345677899999999987653
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=83.89 E-value=2.3 Score=30.70 Aligned_cols=36 Identities=19% Similarity=0.015 Sum_probs=27.2
Q ss_pred eEEEE--ecChhhHHHHHHHHhCCCcEEEEcCCcchhH
Q 022834 2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCD 37 (291)
Q Consensus 2 kI~iI--G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~ 37 (291)
++.|+ |.|.+|.+........|.+|+...+++++.+
T Consensus 31 ~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~ 68 (189)
T d1gu7a2 31 DWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLD 68 (189)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHH
T ss_pred EEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccc
Confidence 46777 5688999888888788999888766655443
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=83.83 E-value=0.51 Score=37.66 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=28.8
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|.|||.|.-|..-|..++++|.+|+++++.+
T Consensus 8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~~ 38 (336)
T d2bs2a2 8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (336)
T ss_dssp EEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 7899999999999999999999999998754
|
| >d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: NADPH-dependent FMN reductase domain: Putative arsenical resistance protein species: Shigella flexneri [TaxId: 623]
Probab=83.55 E-value=2.1 Score=32.32 Aligned_cols=74 Identities=7% Similarity=-0.005 Sum_probs=40.4
Q ss_pred CeEEEE-ec---Chhh----HHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCH----
Q 022834 1 MEVGFL-GL---GIMG----KAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADP---- 67 (291)
Q Consensus 1 mkI~iI-G~---G~mG----~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~---- 67 (291)
+||.+| |. ++.. ..+...+.+.|++|.++|...-.+...... ....+....+.+..+|.+|+++|..
T Consensus 35 ~KIl~I~GS~R~~s~s~~la~~~~~~l~~~G~ev~~idL~dlpl~~~~~~~~~~~v~~l~~~l~~AD~vIi~tP~Y~~~~ 114 (233)
T d2fzva1 35 VRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQI 114 (233)
T ss_dssp CEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHhhhcCeEEEEEccCCCCCCCcccccCCHHHHHHHHHHhhcCeeEEEccccccCc
Confidence 477766 43 2233 334455666899999998653222110000 0011112335567899999999864
Q ss_pred -HHHHHHH
Q 022834 68 -AAALSVV 74 (291)
Q Consensus 68 -~~~~~v~ 74 (291)
..++..+
T Consensus 115 ~~~lKn~i 122 (233)
T d2fzva1 115 TSVMKAQI 122 (233)
T ss_dssp CHHHHHHH
T ss_pred HHHHHhhH
Confidence 2466665
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=83.54 E-value=0.56 Score=36.14 Aligned_cols=32 Identities=25% Similarity=0.152 Sum_probs=29.3
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+.|||.|.-|...|..+++.|.+|+++++.+.
T Consensus 45 vvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~ 76 (261)
T d1mo9a1 45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF 76 (261)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEeccCc
Confidence 78999999999999999999999999987643
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.49 E-value=0.82 Score=32.23 Aligned_cols=31 Identities=29% Similarity=0.245 Sum_probs=26.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCc-EEEEcCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRT 32 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~ 32 (291)
||.|||.|..|.-.|..+.+.|.+ |+++.|.
T Consensus 47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr 78 (153)
T d1gtea3 47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRK 78 (153)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred EEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence 799999999999999999998864 7777664
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=83.22 E-value=0.25 Score=37.84 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=54.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH----CC--Ccc-cCCHHHH--HhhCCEEEEe------cCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----HG--ATV-GGSPAEV--IKKCTITIGM------LAD 66 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~----~g--~~~-~~~~~~~--~~~~dvvii~------vp~ 66 (291)
+|.=||||. ..+...|++.|.+|+.+|.+++-++.+++ .+ +.+ ..+..+. -+..|+|++. +++
T Consensus 40 ~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~ 117 (246)
T d1y8ca_ 40 DYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIID 117 (246)
T ss_dssp EEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCCS
T ss_pred eEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeeccCC
Confidence 466678873 23666778889999999999887665443 33 222 2233332 2346877753 345
Q ss_pred HHHHHHHHhccCccccccCCCcE-EEEc
Q 022834 67 PAAALSVVFDKGGVLEQICPGKG-YIDM 93 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~-vv~~ 93 (291)
+.....++ +.+...|++|.. |++.
T Consensus 118 ~~~~~~~l---~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 118 SDDLKKYF---KAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp HHHHHHHH---HHHHTTEEEEEEEEEEE
T ss_pred HHHHHHHH---HHHHHhCCCCeEEEEEe
Confidence 56677777 777778877654 4444
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.38 E-value=1.2 Score=33.73 Aligned_cols=113 Identities=17% Similarity=0.090 Sum_probs=62.8
Q ss_pred eEEEEec--ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC----C-Ccc----cCCHH---HHHhhCCEEEEecCCH
Q 022834 2 EVGFLGL--GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----G-ATV----GGSPA---EVIKKCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~--G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g-~~~----~~~~~---~~~~~~dvvii~vp~~ 67 (291)
+|.=+|+ |..-..++...-. +-.|+.+|.+++.++.+.+. + ... ...+. ......|+++.-++.+
T Consensus 76 ~VLDlGaGsG~~t~~la~~VG~-~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~ 154 (227)
T d1g8aa_ 76 SVLYLGIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQP 154 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCST
T ss_pred EEEEeccCCCHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEcccc
Confidence 4555655 5555555554433 35799999999888776542 1 111 11222 2234567788777766
Q ss_pred HHHHHHHhccCccccccCCCcEEEEc-------CCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDM-------STVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~-------s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
.+.+.++ +.+...+++|..++.. ++..|....+-.+.+.+.+...++.
T Consensus 155 ~~~~~~l---~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~ 209 (227)
T d1g8aa_ 155 TQAKILI---DNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIER 209 (227)
T ss_dssp THHHHHH---HHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred chHHHHH---HHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 6666666 5666677777654432 2234444433333444557766643
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=82.37 E-value=0.55 Score=38.71 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=26.7
Q ss_pred EEEEecChhhHHHHHHHHhCC-CcEEEEcCC
Q 022834 3 VGFLGLGIMGKAISMNLLRNG-FKVTVWNRT 32 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g-~~V~~~~r~ 32 (291)
+.|||.|.-|+.+|.+|+++| ++|.+..+-
T Consensus 27 ~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG 57 (391)
T d1gpea1 27 YIIAGGGLTGLTVAAKLTENPKIKVLVIEKG 57 (391)
T ss_dssp EEEECCSHHHHHHHHHHHTSTTCCEEEEESS
T ss_pred EEEECcCHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 679999999999999999988 799998654
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.27 E-value=0.79 Score=33.67 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=20.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG 23 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g 23 (291)
|||||=|+|++|..+.+.+.+.+
T Consensus 3 ikigINGFGRIGR~vlR~~~~~~ 25 (190)
T d1k3ta1 3 IKVGINGFGRIGRMVFQALCEDG 25 (190)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT
T ss_pred eEEEEECCChHHHHHHHHHHHcC
Confidence 59999999999999999887654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=82.20 E-value=0.59 Score=34.07 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=57.4
Q ss_pred EecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH----CCC----cc-cCCHHHHH---hhCCEEEEecCCHHHHHHH
Q 022834 6 LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----HGA----TV-GGSPAEVI---KKCTITIGMLADPAAALSV 73 (291)
Q Consensus 6 IG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~----~g~----~~-~~~~~~~~---~~~dvvii~vp~~~~~~~v 73 (291)
||||.=..++ .|++.+.+|+.+|.+++.++.+++ .|+ .+ ..+..+.. ...|.|++.-+ ..+.+++
T Consensus 40 iGcGsG~~s~--~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~-~~~~~~~ 116 (186)
T d1l3ia_ 40 VGCGTGGVTL--ELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGS-GGELQEI 116 (186)
T ss_dssp ESCTTSHHHH--HHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCC-TTCHHHH
T ss_pred EECCeEcccc--cccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCc-cccchHH
Confidence 5665432222 345556789999999988776554 343 22 23444443 35788876653 3556677
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
+ +.+...++++..++. +....+......+.+...+.
T Consensus 117 ~---~~~~~~LkpgG~lvi-~~~~~e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 117 L---RIIKDKLKPGGRIIV-TAILLETKFEAMECLRDLGF 152 (186)
T ss_dssp H---HHHHHTEEEEEEEEE-EECBHHHHHHHHHHHHHTTC
T ss_pred H---HHHHHHhCcCCEEEE-EeeccccHHHHHHHHHHcCC
Confidence 6 566667777664442 23344444555555555543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=81.97 E-value=0.36 Score=36.84 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=53.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH----CCCc--c-cCCHHHH--HhhCCEEEEec-----CCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----HGAT--V-GGSPAEV--IKKCTITIGML-----ADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~----~g~~--~-~~~~~~~--~~~~dvvii~v-----p~~ 67 (291)
+|.=||||. | .++..|+++|++|+++|.+++-++.+++ .+.. + ..+..++ -+..|+|+++- .+.
T Consensus 44 ~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~~~~ 121 (251)
T d1wzna1 44 RVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDE 121 (251)
T ss_dssp EEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGGSCH
T ss_pred EEEEeCCCC-C-ccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhhcCCh
Confidence 577789996 4 4456688899999999999877765543 2322 1 2233322 12457777642 233
Q ss_pred HHHHHHHhccCccccccCCCc-EEEEc
Q 022834 68 AAALSVVFDKGGVLEQICPGK-GYIDM 93 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~-~vv~~ 93 (291)
.....++ +.+...+++|. ++++.
T Consensus 122 ~~~~~~L---~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 122 EDLRKLF---SKVAEALKPGGVFITDF 145 (251)
T ss_dssp HHHHHHH---HHHHHHEEEEEEEEEEE
T ss_pred HHHHHHH---HHHHHHcCCCcEEEEEe
Confidence 4456666 66777777765 44544
|
| >d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Transcarbamylase-like protein species: Bacteroides fragilis [TaxId: 817]
Probab=81.78 E-value=1.4 Score=31.23 Aligned_cols=55 Identities=5% Similarity=-0.013 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEec
Q 022834 10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 10 ~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~v 64 (291)
++..+++..+.+-|.++++..+..=....-...++.+..++.++++++|+|..=+
T Consensus 20 ~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td~ 74 (161)
T d1js1x2 20 AVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKN 74 (161)
T ss_dssp HHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeeeh
Confidence 4677899999999999999987432222222357788889999999999987633
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.62 E-value=1.1 Score=32.96 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=33.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
||||||-. |+. ..+.+.|.+.|+++.+.+. ++ + +.++|.+|++=..
T Consensus 7 mkIgii~~~Gn~-~s~~~al~~~G~~~~~v~~-~~-----------------~-l~~~D~lIlPGG~ 53 (202)
T d1q7ra_ 7 MKIGVLGLQGAV-REHVRAIEACGAEAVIVKK-SE-----------------Q-LEGLDGLVLPGGE 53 (202)
T ss_dssp CEEEEESCGGGC-HHHHHHHHHTTCEEEEECS-GG-----------------G-GTTCSEEEECCCC
T ss_pred CEEEEEECCCCH-HHHHHHHHHCCCcEEEECC-HH-----------------H-HhcCCEEEECCCC
Confidence 89999988 887 5556888999999887742 21 2 3568888886533
|
| >d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Quinone reductase domain: Quinone reductase type 2 (menadione reductase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.29 E-value=1.1 Score=33.60 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=23.6
Q ss_pred CeEEEE-ec-------ChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFL-GL-------GIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iI-G~-------G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|||.|| |- ..|...+...+.++|++|.+.|-..
T Consensus 3 mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL~~ 43 (230)
T d2qwxa1 3 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYA 43 (230)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred CEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 888877 43 3455566667778999999987643
|
| >d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: WrbA-like domain: Trp repressor binding protein WrbA species: Deinococcus radiodurans [TaxId: 1299]
Probab=80.25 E-value=3.3 Score=30.13 Aligned_cols=114 Identities=8% Similarity=0.049 Sum_probs=63.4
Q ss_pred CeEEEEe---cC---hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CCCcccCCHHHHHhhCCEEEEe
Q 022834 1 MEVGFLG---LG---IMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HGATVGGSPAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG---~G---~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g~~~~~~~~~~~~~~dvvii~ 63 (291)
|||.||= .| .|...++..+.+.|++|.+++..+.....+.. ..-...... +.+.++|.||+.
T Consensus 3 mkilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~i~~aD~ii~g 81 (201)
T d1ydga_ 3 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATP-ADLEWAEAIVFS 81 (201)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCH-HHHHHCSEEEEE
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHhcCCEEEEEEccccCccchhhhhhHhhcCCCcccCchhhhh-hhHhhCCEeEEe
Confidence 8999883 35 56777888888999999988764433222211 111111223 445789999999
Q ss_pred cCCH-----HHHHHHHhccCcccc-----ccCCCcEE-EEcCCC-----CHHHHHHHHHHHHhcCCcEEEcc
Q 022834 64 LADP-----AAALSVVFDKGGVLE-----QICPGKGY-IDMSTV-----DHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 64 vp~~-----~~~~~v~~~~~~l~~-----~l~~~~~v-v~~s~~-----~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.|.. ..++..+ +++.+ .+ .++.. ...|.+ .-.+...+...+...+..++..+
T Consensus 82 sPvy~~~~s~~~k~fl---Dr~~~~~~~~~l-~gK~~~~~~s~g~~~gg~e~~~~~~~~~~~~~g~~~v~~~ 149 (201)
T d1ydga_ 82 SPTRFGGATSQMRAFI---DTLGGLWSSGKL-ANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPG 149 (201)
T ss_dssp EEEETTEECHHHHHHH---HTTHHHHHTTTT-TTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCCT
T ss_pred cceeeeeccchhHHHH---HHhhhHHhcccc-CCceeeeeeccccCCCchHHHHHhHHHHHHHcCCcccccc
Confidence 9853 3466666 43321 12 33332 222221 23455556556655566555443
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.25 E-value=1.8 Score=30.68 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=44.5
Q ss_pred CeEEEEecC-hhhHHHHHHHHhCCCcEEEEcCC-----cchhHHHHHC------CCcccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRT-----LSKCDELVAH------GATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~-----~~~~~~l~~~------g~~~~~~~~~~~~~~dvvii~v 64 (291)
.||++||-| ++..+++..+..-|.+++++.+. ++-.+.+.+. ......+..++++++|+|..-.
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~ 80 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV 80 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence 379999974 46788888888889999988753 1112222221 2456779999999999888643
|