Citrus Sinensis ID: 022852

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYSIFCS
ccHHHHHHHHHHHHHHHHcccEEEEcccccEEEEEccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccHHHHHHcccccHHHHccccccccHHHHHHHccccccHHHHHHcccccccEEEEEEEEccccHHHHcccccEEEEEcccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEEcccccccccccccEEEEEcccccccccccc
ccHHHHHHHHHHHHHHHHcccEEEEEccccEEEEccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHcccEEcccccEEEEEEcccccccccHHHHcccEEEccccHHHHHccccccccHHHHHHHHcccccHHHHcHHcccccccEEEEEEEEccccHHHHccccEEEEEEccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccccEEEEEEEEEEcccccEEcccEEEEEEEcccEEEEEEEEcc
MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKStgklgklkrpveviafsdeegvrfqstflgsaALAGILpvsalrvsdksGVTVLDALRENSIDIAEESLLQlkydpasvwGYIEVHIeqgpvlewvgFPLGVVQGIAGQTRLKVtvrgsqghagtvpmsmrqdpMTAAAELIVLLERLCkhpkdflsydgrsncstlesLSSSLVCTvgeisswpsasnvipgearnlslddgYFLLYSIFCS
MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKstgklgklkrpVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVtvrgsqghagtvpmsmrqdPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSwpsasnvipGEARNLSLDDGYFLLYSIFCS
MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRsncstleslssslVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYSIFCS
********GNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRG*****************TAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYSIFC*
MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS*F**
MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYSIFCS
MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYSIFCS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYSIFCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query291 2.2.26 [Sep-21-2011]
O49434 525 Allantoate deiminase, chl yes no 0.934 0.518 0.805 1e-128
Q53389 409 N-carbamoyl-L-amino acid N/A no 0.828 0.589 0.390 2e-46
P37113 409 N-carbamoyl-L-amino acid N/A no 0.828 0.589 0.390 5e-46
Q01264 414 Hydantoin utilization pro N/A no 0.855 0.601 0.368 6e-44
O32149 412 Allantoate amidohydrolase yes no 0.835 0.589 0.353 3e-36
P77425 411 Allantoate amidohydrolase N/A no 0.848 0.600 0.327 1e-33
Q57051 411 Uncharacterized hydrolase yes no 0.828 0.586 0.332 3e-28
A0QZE3 438 Putative hydrolase MSMEG_ yes no 0.828 0.550 0.314 3e-23
>sp|O49434|AAH_ARATH Allantoate deiminase, chloroplastic OS=Arabidopsis thaliana GN=AAH PE=1 SV=2 Back     alignment and function desciption
 Score =  456 bits (1173), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/272 (80%), Positives = 251/272 (92%)

Query: 1   MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIF 60
           MSPAS+RA  LIR WMEDAGL TWVD++GNVHGRVE  N S+QALLIGSH+DTV+DAG +
Sbjct: 118 MSPASIRAIPLIRGWMEDAGLSTWVDYMGNVHGRVEPKNGSSQALLIGSHMDTVIDAGKY 177

Query: 61  DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA 120
           DGSLGII+AISALKVLK  G+LG+LKRPVEVIAFSDEEGVRFQSTFLGSAALAGI+PVS 
Sbjct: 178 DGSLGIISAISALKVLKIDGRLGELKRPVEVIAFSDEEGVRFQSTFLGSAALAGIMPVSR 237

Query: 121 LRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGV 180
           L V+DKSG++V DAL+ENSIDI +E+L+QLKYDPASVWGY+EVHIEQGPVLEWVG+PLGV
Sbjct: 238 LEVTDKSGISVQDALKENSIDITDENLMQLKYDPASVWGYVEVHIEQGPVLEWVGYPLGV 297

Query: 181 VQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRS 240
           V+GIAGQTRLKVTV+GSQGHAGTVPMSMRQDPMT AAELIVLLE +CK+PKD+LS + + 
Sbjct: 298 VKGIAGQTRLKVTVKGSQGHAGTVPMSMRQDPMTGAAELIVLLESVCKNPKDYLSCNVQC 357

Query: 241 NCSTLESLSSSLVCTVGEISSWPSASNVIPGE 272
           N  T+ESL++SLVCTVGEIS+WPSASNVIPG+
Sbjct: 358 NEDTVESLANSLVCTVGEISTWPSASNVIPGQ 389
Involved in the catabolism of purine nucleotides.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 3EC: .EC: 9
>sp|Q53389|AMAB2_GEOSE N-carbamoyl-L-amino acid hydrolase OS=Geobacillus stearothermophilus GN=amaB PE=1 SV=1 Back     alignment and function description
>sp|P37113|AMAB1_GEOSE N-carbamoyl-L-amino acid hydrolase OS=Geobacillus stearothermophilus GN=amaB PE=3 SV=2 Back     alignment and function description
>sp|Q01264|HYUC_PSESN Hydantoin utilization protein C OS=Pseudomonas sp. (strain NS671) GN=hyuC PE=1 SV=1 Back     alignment and function description
>sp|O32149|ALLC_BACSU Allantoate amidohydrolase OS=Bacillus subtilis (strain 168) GN=pucF PE=2 SV=1 Back     alignment and function description
>sp|P77425|ALLC_ECOLI Allantoate amidohydrolase OS=Escherichia coli (strain K12) GN=allC PE=1 SV=1 Back     alignment and function description
>sp|Q57051|Y588_HAEIN Uncharacterized hydrolase HI_0588 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0588 PE=1 SV=1 Back     alignment and function description
>sp|A0QZE3|Y3995_MYCS2 Putative hydrolase MSMEG_3995/MSMEI_3903 OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_3995 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
224138556 442 predicted protein [Populus trichocarpa] 0.934 0.615 0.867 1e-134
297804132 529 hypothetical protein ARALYDRAFT_914645 [ 0.934 0.514 0.808 1e-128
359473090 492 PREDICTED: allantoate deiminase, chlorop 0.934 0.552 0.819 1e-128
297738015 478 unnamed protein product [Vitis vinifera] 0.934 0.569 0.819 1e-127
15235272 525 allantoate deiminase [Arabidopsis thalia 0.934 0.518 0.805 1e-126
255582722 436 conserved hypothetical protein [Ricinus 0.934 0.623 0.834 1e-125
356530191 483 PREDICTED: allantoate deiminase, chlorop 0.934 0.563 0.790 1e-124
218158555 479 allantoate amidohydrolase [Glycine max] 0.934 0.567 0.783 1e-123
189502782 483 putative allantoate amidohydrolase [Phas 0.934 0.563 0.790 1e-123
351724933 483 allantoate amidohydrolase precursor [Gly 0.934 0.563 0.775 1e-123
>gi|224138556|ref|XP_002326632.1| predicted protein [Populus trichocarpa] gi|222833954|gb|EEE72431.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/272 (86%), Positives = 253/272 (93%)

Query: 1   MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIF 60
           MSPASVRA NLIR WMEDAGL TWVD++GNVHGRVEGLNASA+ALLIGSHLDTVVDAGIF
Sbjct: 64  MSPASVRAANLIRAWMEDAGLTTWVDYMGNVHGRVEGLNASAEALLIGSHLDTVVDAGIF 123

Query: 61  DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA 120
           DGSLGII+AISALKVLKS G L  L RPVEVIAFSDEEGVRFQSTFLGSAA+AGILPVSA
Sbjct: 124 DGSLGIISAISALKVLKSNGTLTNLIRPVEVIAFSDEEGVRFQSTFLGSAAVAGILPVSA 183

Query: 121 LRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGV 180
           L++SDKSGV V DAL+ENSI I EESL QLKYDP SVWGYIEVHIEQGPVLEWVGFPLGV
Sbjct: 184 LQISDKSGVNVQDALKENSIAITEESLFQLKYDPQSVWGYIEVHIEQGPVLEWVGFPLGV 243

Query: 181 VQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRS 240
           V+GIAGQTRLKVTVRGSQGHAGTVPMS+RQDPM A+AELI+LLE LCK+PKDFLSYDG  
Sbjct: 244 VKGIAGQTRLKVTVRGSQGHAGTVPMSLRQDPMAASAELIMLLESLCKNPKDFLSYDGHC 303

Query: 241 NCSTLESLSSSLVCTVGEISSWPSASNVIPGE 272
           N ST+ESLS+SLVCTVGEIS+WPSASNVIPG+
Sbjct: 304 NDSTVESLSNSLVCTVGEISTWPSASNVIPGQ 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297804132|ref|XP_002869950.1| hypothetical protein ARALYDRAFT_914645 [Arabidopsis lyrata subsp. lyrata] gi|297315786|gb|EFH46209.1| hypothetical protein ARALYDRAFT_914645 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|359473090|ref|XP_002275843.2| PREDICTED: allantoate deiminase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738015|emb|CBI27216.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15235272|ref|NP_193740.1| allantoate deiminase [Arabidopsis thaliana] gi|75219624|sp|O49434.2|AAH_ARATH RecName: Full=Allantoate deiminase, chloroplastic; AltName: Full=Allantoate amidohydrolase; Short=AtAAH; Flags: Precursor gi|7228243|emb|CAA16615.2| hyuC-like protein [Arabidopsis thaliana] gi|7268802|emb|CAB79007.1| hyuC-like protein [Arabidopsis thaliana] gi|95147310|gb|ABF57290.1| At4g20070 [Arabidopsis thaliana] gi|332658869|gb|AEE84269.1| allantoate deiminase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255582722|ref|XP_002532138.1| conserved hypothetical protein [Ricinus communis] gi|223528174|gb|EEF30237.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356530191|ref|XP_003533667.1| PREDICTED: allantoate deiminase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|218158555|gb|ACK75561.1| allantoate amidohydrolase [Glycine max] Back     alignment and taxonomy information
>gi|189502782|gb|ABR57240.2| putative allantoate amidohydrolase [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|351724933|ref|NP_001236563.1| allantoate amidohydrolase precursor [Glycine max] gi|225348713|gb|ACN87318.1| allantoate amidohydrolase [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
TAIR|locus:2119732 525 AAH "allantoate amidohydrolase 0.934 0.518 0.779 4.2e-111
UNIPROTKB|Q53389409 amaB "N-carbamoyl-L-amino acid 0.735 0.523 0.431 4.2e-49
TIGR_CMR|SPO_2556409 SPO_2556 "N-carbamyl-L-amino a 0.756 0.537 0.413 3.6e-40
UNIPROTKB|Q4K949409 PFL_4137 "N-carbamyl-L-amino a 0.725 0.515 0.369 1.7e-34
TAIR|locus:2158342476 UAH "ureidoglycolate amidohydr 0.749 0.457 0.383 2.1e-34
UNIPROTKB|Q4KDM6425 PFL_2550 "N-carbamyl-L-amino a 0.725 0.496 0.354 3.4e-34
UNIPROTKB|B9RTE0349 RCOM_0908830 "N-carbamoyl-L-am 0.793 0.661 0.369 3.8e-33
UNIPROTKB|P77425411 allC "allantoate amidohydrolas 0.728 0.515 0.360 4.9e-33
UNIPROTKB|Q4KAF2426 PFL_3679 "N-carbamyl-L-amino a 0.728 0.497 0.330 1.1e-31
TIGR_CMR|SPO_3304394 SPO_3304 "amidase, hydantoinas 0.556 0.411 0.422 6.1e-31
TAIR|locus:2119732 AAH "allantoate amidohydrolase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 212/272 (77%), Positives = 241/272 (88%)

Query:     1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIF 60
             MSPAS+RA  LIR WMEDAGL TWVD++GNVHGRVE  N S+QALLIGSH+DTV+DAG +
Sbjct:   118 MSPASIRAIPLIRGWMEDAGLSTWVDYMGNVHGRVEPKNGSSQALLIGSHMDTVIDAGKY 177

Query:    61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA 120
             DGSLGII+AISALKVLK  G+LG+LKRPVEVIAFSDEEGVRFQSTFLGSAALAGI+PVS 
Sbjct:   178 DGSLGIISAISALKVLKIDGRLGELKRPVEVIAFSDEEGVRFQSTFLGSAALAGIMPVSR 237

Query:   121 LRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGV 180
             L V+DKSG++V DAL+ENSIDI +E+L+QLKYDPASVWGY+EVHIEQGPVLEWVG+PLGV
Sbjct:   238 LEVTDKSGISVQDALKENSIDITDENLMQLKYDPASVWGYVEVHIEQGPVLEWVGYPLGV 297

Query:   181 VQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRX 240
             V+GIAGQTRLKVTV+GSQGHAGTVPMSMRQDPMT AAELIVLLE +CK+PKD+LS + + 
Sbjct:   298 VKGIAGQTRLKVTVKGSQGHAGTVPMSMRQDPMTGAAELIVLLESVCKNPKDYLSCNVQC 357

Query:   241 XXXXXXXXXXXXVCTVGEISSWPSASNVIPGE 272
                         VCTVGEIS+WPSASNVIPG+
Sbjct:   358 NEDTVESLANSLVCTVGEISTWPSASNVIPGQ 389
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008152 "metabolic process" evidence=IEA
GO:0008237 "metallopeptidase activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016787 "hydrolase activity" evidence=IEA
GO:0016813 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines" evidence=IEA
GO:0010136 "ureide catabolic process" evidence=IMP
GO:0047652 "allantoate deiminase activity" evidence=IGI;IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0015996 "chlorophyll catabolic process" evidence=RCA
UNIPROTKB|Q53389 amaB "N-carbamoyl-L-amino acid hydrolase" [Geobacillus stearothermophilus (taxid:1422)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2556 SPO_2556 "N-carbamyl-L-amino acid amidohydrolase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K949 PFL_4137 "N-carbamyl-L-amino acid amidohydrolase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
TAIR|locus:2158342 UAH "ureidoglycolate amidohydrolase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KDM6 PFL_2550 "N-carbamyl-L-amino acid amidohydrolase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|B9RTE0 RCOM_0908830 "N-carbamoyl-L-amino acid hydrolase, putative" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
UNIPROTKB|P77425 allC "allantoate amidohydrolase monomer" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KAF2 PFL_3679 "N-carbamyl-L-amino acid amidohydrolase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3304 SPO_3304 "amidase, hydantoinase/carbamoylase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O49434AAH_ARATH3, ., 5, ., 3, ., 90.80510.93470.5180yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
cd03884 399 cd03884, M20_bAS, M20 Peptidase beta-alanine synth 1e-107
PRK09290 413 PRK09290, PRK09290, allantoate amidohydrolase; Rev 1e-96
PRK12890 414 PRK12890, PRK12890, allantoate amidohydrolase; Rev 2e-84
PRK12893 412 PRK12893, PRK12893, allantoate amidohydrolase; Rev 6e-80
TIGR01879 400 TIGR01879, hydantase, amidase, hydantoinase/carbam 5e-70
PRK12892 412 PRK12892, PRK12892, allantoate amidohydrolase; Rev 2e-64
PRK13799 591 PRK13799, PRK13799, unknown domain/N-carbamoyl-L-a 3e-62
PRK13590 591 PRK13590, PRK13590, putative bifunctional OHCU dec 1e-61
PRK12891 414 PRK12891, PRK12891, allantoate amidohydrolase; Rev 3e-50
TIGR03176 406 TIGR03176, AllC, allantoate amidohydrolase 1e-47
COG0624 409 COG0624, ArgE, Acetylornithine deacetylase/Succiny 8e-21
pfam01546 310 pfam01546, Peptidase_M20, Peptidase family M20/M25 1e-10
cd03885363 cd03885, M20_CPDG2, M20 Peptidase Glutamate carbox 2e-07
cd08659 365 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylo 3e-06
cd03879285 cd03879, M28_AAP, M28 Zn-Peptidase Aeromonas (Vibr 2e-05
cd03896359 cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspar 3e-05
pfam04389173 pfam04389, Peptidase_M28, Peptidase family M28 4e-05
cd05640279 cd05640, M28_like_1, M28 Zn-Peptidases 5e-05
cd03886 372 cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 fa 6e-05
pfam07687107 pfam07687, M20_dimer, Peptidase dimerisation domai 0.001
cd05666 373 cd05666, M20_Acy1_like1, M20 Peptidase Aminoacylas 0.002
cd03883276 cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma gl 0.003
cd02690252 cd02690, M28, M28 Zn-peptidases include aminopepti 0.003
cd05675426 cd05675, M20_yscS_like, M20 Peptidase, carboxypept 0.004
cd03873237 cd03873, Zinc_peptidase_like, Zinc peptidases M18, 0.004
>gnl|CDD|193505 cd03884, M20_bAS, M20 Peptidase beta-alanine synthase, an amidohydrolase Back     alignment and domain information 
 Score =  317 bits (814), Expect = e-107
 Identities = 124/279 (44%), Positives = 166/279 (59%), Gaps = 24/279 (8%)

Query: 2   SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFD 61
           +P    A + +  WME+AGL   +D  GN+ GR+EG +    A+L GSHLDTV + G FD
Sbjct: 25  TPEDRAARDWLAAWMEEAGLEVRIDAAGNLFGRLEGADPDLPAVLTGSHLDTVPNGGRFD 84

Query: 62  GSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSAL 121
           G+LG++  +  L+ LK  G   +  RP+EV+AF++EEG RF  + LGS ALAG L +  L
Sbjct: 85  GALGVLAGLEVLRALKEAG--IRPPRPIEVVAFTNEEGSRFGPSLLGSRALAGTLDLEDL 142

Query: 122 R-VSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGV 180
             + D  GVT+ +AL    I    E L +   DP  +  Y+E+HIEQGPVLE  G P+GV
Sbjct: 143 LALRDADGVTLAEALAA--IGYDPERLAEAARDPGDIAAYLELHIEQGPVLEAEGLPIGV 200

Query: 181 VQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRS 240
           V GIAG  RL+VTV G  GHAGT PM++R+D + AAAELI+ +ER+ +            
Sbjct: 201 VTGIAGIRRLRVTVTGEAGHAGTTPMALRRDALLAAAELILAVERIAR------------ 248

Query: 241 NCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLD 279
                  L   LV TVG +   P+A NVIPGE    +LD
Sbjct: 249 ------ELGDDLVATVGRLEVEPNAVNVIPGEVE-FTLD 280

Peptidase M20 family, beta-alanine synthase (bAS; N-carbamoyl-beta-alanine amidohydrolase and beta-ureidopropionase; EC 3.5.1.6) subfamily. bAS is an amidohydrolase and is the final enzyme in the pyrimidine catabolic pathway, which is involved in the regulation of the cellular pyrimidine pool. The bAS catalyzes the irreversible hydrolysis of the N-carbamylated beta-amino acids to beta-alanine or aminoisobutyrate under the release of carbon dioxide and ammonia. Also included in this subfamily is allantoate amidohydrolase (allantoate deiminase), which catalyzes the conversion of allantoate to (S)-ureidoglycolate, one of the crucial alternate steps in purine metabolism. It is possible that these two enzymes arose from the same ancestral peptidase that evolved into two structurally related enzymes with distinct catalytic properties and biochemical roles within the cell. Yeast requires beta-alanine as a precursor of pantothenate and coenzyme A biosynthesis, but generates it mostly via degradation of spermine. Disorders in pyrimidine degradation and beta-alanine metabolism caused by beta-ureidopropionase deficiency (UPB1 gene) in humans are normally associated with neurological disorders. Length = 399
>gnl|CDD|236456 PRK09290, PRK09290, allantoate amidohydrolase; Reviewed Back     alignment and domain information
>gnl|CDD|237248 PRK12890, PRK12890, allantoate amidohydrolase; Reviewed Back     alignment and domain information
>gnl|CDD|237250 PRK12893, PRK12893, allantoate amidohydrolase; Reviewed Back     alignment and domain information
>gnl|CDD|200138 TIGR01879, hydantase, amidase, hydantoinase/carbamoylase family Back     alignment and domain information
>gnl|CDD|183817 PRK12892, PRK12892, allantoate amidohydrolase; Reviewed Back     alignment and domain information
>gnl|CDD|106740 PRK13799, PRK13799, unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|184168 PRK13590, PRK13590, putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|237249 PRK12891, PRK12891, allantoate amidohydrolase; Reviewed Back     alignment and domain information
>gnl|CDD|234137 TIGR03176, AllC, allantoate amidohydrolase Back     alignment and domain information
>gnl|CDD|223697 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|216562 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40 Back     alignment and domain information
>gnl|CDD|193506 cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme Back     alignment and domain information
>gnl|CDD|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like Back     alignment and domain information
>gnl|CDD|193500 cd03879, M28_AAP, M28 Zn-Peptidase Aeromonas (Vibrio) proteolytica aminopeptidase Back     alignment and domain information
>gnl|CDD|193516 cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins Back     alignment and domain information
>gnl|CDD|218057 pfam04389, Peptidase_M28, Peptidase family M28 Back     alignment and domain information
>gnl|CDD|193519 cd05640, M28_like_1, M28 Zn-Peptidases Back     alignment and domain information
>gnl|CDD|193507 cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family Back     alignment and domain information
>gnl|CDD|219515 pfam07687, M20_dimer, Peptidase dimerisation domain Back     alignment and domain information
>gnl|CDD|193542 cd05666, M20_Acy1_like1, M20 Peptidase Aminoacylase 1 subfamily Back     alignment and domain information
>gnl|CDD|193504 cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma glutamate carboxypeptidase Back     alignment and domain information
>gnl|CDD|193493 cd02690, M28, M28 Zn-peptidases include aminopeptidases and carboxypeptidases Back     alignment and domain information
>gnl|CDD|193550 cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like Back     alignment and domain information
>gnl|CDD|193495 cd03873, Zinc_peptidase_like, Zinc peptidases M18, M20, M28, and M42 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 291
TIGR03176 406 AllC allantoate amidohydrolase. This enzyme cataly 100.0
PRK13799 591 unknown domain/N-carbamoyl-L-amino acid hydrolase 100.0
PRK13590 591 putative bifunctional OHCU decarboxylase/allantoat 100.0
PRK12891 414 allantoate amidohydrolase; Reviewed 100.0
TIGR01879 401 hydantase amidase, hydantoinase/carbamoylase famil 100.0
PRK12892 412 allantoate amidohydrolase; Reviewed 100.0
PRK12890 414 allantoate amidohydrolase; Reviewed 100.0
PRK12893 412 allantoate amidohydrolase; Reviewed 100.0
PRK09290 413 allantoate amidohydrolase; Reviewed 100.0
PLN02693 437 IAA-amino acid hydrolase 100.0
PLN02280 478 IAA-amino acid hydrolase 100.0
PRK06915 422 acetylornithine deacetylase; Validated 100.0
PRK08588 377 succinyl-diaminopimelate desuccinylase; Reviewed 100.0
PRK13009 375 succinyl-diaminopimelate desuccinylase; Reviewed 100.0
COG1473 392 AbgB Metal-dependent amidase/aminoacylase/carboxyp 100.0
PRK07473 376 carboxypeptidase; Provisional 100.0
TIGR01246 370 dapE_proteo succinyl-diaminopimelate desuccinylase 99.98
PRK07338 402 hypothetical protein; Provisional 99.98
PRK06837 427 acetylornithine deacetylase; Provisional 99.98
TIGR01883 361 PepT-like peptidase T-like protein. This model rep 99.98
PRK06133 410 glutamate carboxypeptidase; Reviewed 99.97
PRK13004 399 peptidase; Reviewed 99.97
TIGR03320 395 ygeY M20/DapE family protein YgeY. Members of this 99.97
PRK07906 426 hypothetical protein; Provisional 99.97
TIGR01900 373 dapE-gram_pos succinyl-diaminopimelate desuccinyla 99.97
PRK13013 427 succinyl-diaminopimelate desuccinylase; Reviewed 99.97
TIGR01891 363 amidohydrolases amidohydrolase. This model represe 99.97
TIGR01910 375 DapE-ArgE acetylornithine deacetylase or succinyl- 99.97
TIGR03526 395 selenium_YgeY putative selenium metabolism hydrola 99.97
PRK07522 385 acetylornithine deacetylase; Provisional 99.97
PRK08652 347 acetylornithine deacetylase; Provisional 99.97
PRK00466 346 acetyl-lysine deacetylase; Validated 99.97
TIGR01892 364 AcOrn-deacetyl acetylornithine deacetylase (ArgE). 99.97
PRK09133 472 hypothetical protein; Provisional 99.97
PRK05111 383 acetylornithine deacetylase; Provisional 99.97
PRK13007352 succinyl-diaminopimelate desuccinylase; Reviewed 99.97
PRK13381 404 peptidase T; Provisional 99.97
PRK08596 421 acetylornithine deacetylase; Validated 99.96
PRK13983 400 diaminopimelate aminotransferase; Provisional 99.96
TIGR01893 477 aa-his-dipept aminoacyl-histidine dipeptidase. 99.96
PRK08737 364 acetylornithine deacetylase; Provisional 99.96
PRK04443 348 acetyl-lysine deacetylase; Provisional 99.96
TIGR01880 400 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase 99.96
PRK06446 436 hypothetical protein; Provisional 99.96
COG0624 409 ArgE Acetylornithine deacetylase/Succinyl-diaminop 99.96
PRK05469 408 peptidase T; Provisional 99.96
PRK08201 456 hypothetical protein; Provisional 99.96
TIGR01882 410 peptidase-T peptidase T. This model represents a t 99.96
TIGR01902 336 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d 99.96
PRK09104 464 hypothetical protein; Validated 99.95
PRK08651 394 succinyl-diaminopimelate desuccinylase; Reviewed 99.95
PRK07907 449 hypothetical protein; Provisional 99.95
PRK08262 486 hypothetical protein; Provisional 99.95
PRK15026 485 aminoacyl-histidine dipeptidase; Provisional 99.94
PRK07318 466 dipeptidase PepV; Reviewed 99.94
KOG2275 420 consensus Aminoacylase ACY1 and related metalloexo 99.93
TIGR01886 466 dipeptidase dipeptidase PepV. This model represent 99.93
PRK07205 444 hypothetical protein; Provisional 99.93
PRK07079 469 hypothetical protein; Provisional 99.93
TIGR01887 447 dipeptidaselike dipeptidase, putative. This model 99.93
PRK06156 520 hypothetical protein; Provisional 99.89
PRK08554 438 peptidase; Reviewed 99.82
PF07687111 M20_dimer: Peptidase dimerisation domain This fami 99.63
PRK10199346 alkaline phosphatase isozyme conversion aminopepti 99.56
KOG2276 473 consensus Metalloexopeptidases [Amino acid transpo 99.32
COG4187 553 RocB Arginine degradation protein (predicted deacy 99.31
COG2195 414 PepD Di- and tripeptidases [Amino acid transport a 99.21
TIGR03106343 trio_M42_hydro hydrolase, peptidase M42 family. Th 99.21
PRK09961344 exoaminopeptidase; Provisional 99.09
TIGR03107350 glu_aminopep glutamyl aminopeptidase. This model r 99.08
COG1363355 FrvX Cellulase M and related proteins [Carbohydrat 99.05
PRK09864356 putative peptidase; Provisional 98.91
PF01546189 Peptidase_M20: Peptidase family M20/M25/M40 This f 98.82
PF04389179 Peptidase_M28: Peptidase family M28; InterPro: IPR 98.62
KOG2194 834 consensus Aminopeptidases of the M20 family [Postt 98.41
PF05343292 Peptidase_M42: M42 glutamyl aminopeptidase; InterP 97.83
COG2234435 Iap Predicted aminopeptidases [General function pr 97.74
KOG2195 702 consensus Transferrin receptor and related protein 97.62
KOG3946338 consensus Glutaminyl cyclase [Posttranslational mo 96.82
PF05450234 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri 95.85
COG4882486 Predicted aminopeptidase, Iap family [General func 95.17
KOG2526555 consensus Predicted aminopeptidases - M20/M25/M40 88.47
>TIGR03176 AllC allantoate amidohydrolase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-51  Score=390.20  Aligned_cols=260  Identities=34%  Similarity=0.532  Sum_probs=234.1

Q ss_pred             CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHcC
Q 022852            1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG   80 (291)
Q Consensus         1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~~   80 (291)
                      ||.++.++++||++||+++|+++++|.+||++++++|.+++.|+|+++||+||||.||.+|+..|++++|++++.|++.+
T Consensus        28 ~s~~~~~a~~~~~~~~~~~Gl~v~~D~~gN~~~~~~g~~~~~~~i~~gsHlDtv~~gG~~dg~~Gv~~~le~~~~l~~~~  107 (406)
T TIGR03176        28 YSPEWLAAQQQFKKRMAESGLETRFDDVGNLYGRLVGTEFPEETILTGSHIDTVVNGGNLDGQFGALAAWLAVDYLKEKY  107 (406)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEcCCCcEEEEecCCCCCCCeEEEeccccCCCCCCccCchhhHHHHHHHHHHHHHcC
Confidence            68999999999999999999999999999999999998777899999999999999999999999999999999999998


Q ss_pred             CCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcch-hhhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceee
Q 022852           81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVS-ALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG  159 (291)
Q Consensus        81 ~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~-~~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a  159 (291)
                      .  +++++|.++++++||+++|+++++||+.+++.+..+ .+.+.|.+|+++.++|.+.|++++.  +.+   ....+.+
T Consensus       108 ~--~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~--~~~---~~~~~~~  180 (406)
T TIGR03176       108 G--APLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRK--APT---VRDDIKA  180 (406)
T ss_pred             C--CCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCccc--ccc---cccccce
Confidence            8  899999999999999999999999999999977654 5688999999999999999997642  111   1236889


Q ss_pred             EEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 022852          160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR  239 (291)
Q Consensus       160 ~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~  239 (291)
                      |+|+|+|||++++..+..++++++++|..|++|+|+|+++|||+.||..++|||.+|++++.+|+++..+.         
T Consensus       181 ~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~~---------  251 (406)
T TIGR03176       181 FVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERAKEI---------  251 (406)
T ss_pred             EEEEEECCCcchHHCCCeEEEEeecccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc---------
Confidence            99999999999999999999999999999999999999999766674456999999999999998875431         


Q ss_pred             CCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852          240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY  286 (291)
Q Consensus       240 ~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~  286 (291)
                               ..+.++|+|.|++||++.|+||++|+ +.+|+|+.+..
T Consensus       252 ---------~~~~~~tvG~I~~gg~~~NvIP~~a~-~~~DiR~~~~~  288 (406)
T TIGR03176       252 ---------GDPLVLTFGKVEPVPNTVNVVPGETT-FTIDCRHTDAA  288 (406)
T ss_pred             ---------CCCcEEEEEEEEEcCCceEEECCeEE-EEEEeeCCCHH
Confidence                     24568999999976699999999999 99999998754

This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional Back     alignment and domain information
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional Back     alignment and domain information
>PRK12891 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family Back     alignment and domain information
>PRK12892 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK12890 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK12893 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK09290 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PLN02693 IAA-amino acid hydrolase Back     alignment and domain information
>PLN02280 IAA-amino acid hydrolase Back     alignment and domain information
>PRK06915 acetylornithine deacetylase; Validated Back     alignment and domain information
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only] Back     alignment and domain information
>PRK07473 carboxypeptidase; Provisional Back     alignment and domain information
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade Back     alignment and domain information
>PRK07338 hypothetical protein; Provisional Back     alignment and domain information
>PRK06837 acetylornithine deacetylase; Provisional Back     alignment and domain information
>TIGR01883 PepT-like peptidase T-like protein Back     alignment and domain information
>PRK06133 glutamate carboxypeptidase; Reviewed Back     alignment and domain information
>PRK13004 peptidase; Reviewed Back     alignment and domain information
>TIGR03320 ygeY M20/DapE family protein YgeY Back     alignment and domain information
>PRK07906 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>TIGR01891 amidohydrolases amidohydrolase Back     alignment and domain information
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase Back     alignment and domain information
>PRK07522 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK08652 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK00466 acetyl-lysine deacetylase; Validated Back     alignment and domain information
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE) Back     alignment and domain information
>PRK09133 hypothetical protein; Provisional Back     alignment and domain information
>PRK05111 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK13381 peptidase T; Provisional Back     alignment and domain information
>PRK08596 acetylornithine deacetylase; Validated Back     alignment and domain information
>PRK13983 diaminopimelate aminotransferase; Provisional Back     alignment and domain information
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase Back     alignment and domain information
>PRK08737 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK04443 acetyl-lysine deacetylase; Provisional Back     alignment and domain information
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase Back     alignment and domain information
>PRK06446 hypothetical protein; Provisional Back     alignment and domain information
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05469 peptidase T; Provisional Back     alignment and domain information
>PRK08201 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01882 peptidase-T peptidase T Back     alignment and domain information
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase Back     alignment and domain information
>PRK09104 hypothetical protein; Validated Back     alignment and domain information
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK07907 hypothetical protein; Provisional Back     alignment and domain information
>PRK08262 hypothetical protein; Provisional Back     alignment and domain information
>PRK15026 aminoacyl-histidine dipeptidase; Provisional Back     alignment and domain information
>PRK07318 dipeptidase PepV; Reviewed Back     alignment and domain information
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01886 dipeptidase dipeptidase PepV Back     alignment and domain information
>PRK07205 hypothetical protein; Provisional Back     alignment and domain information
>PRK07079 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01887 dipeptidaselike dipeptidase, putative Back     alignment and domain information
>PRK06156 hypothetical protein; Provisional Back     alignment and domain information
>PRK08554 peptidase; Reviewed Back     alignment and domain information
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 [] Back     alignment and domain information
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional Back     alignment and domain information
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism] Back     alignment and domain information
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family Back     alignment and domain information
>PRK09961 exoaminopeptidase; Provisional Back     alignment and domain information
>TIGR03107 glu_aminopep glutamyl aminopeptidase Back     alignment and domain information
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09864 putative peptidase; Provisional Back     alignment and domain information
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG2234 Iap Predicted aminopeptidases [General function prediction only] Back     alignment and domain information
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only] Back     alignment and domain information
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch Back     alignment and domain information
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only] Back     alignment and domain information
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
3n5f_A 408 Crystal Structure Of L-N-Carbamoylase From Geobacil 1e-46
1z2l_A 423 Crystal Structure Of Allantoate-Amidohydrolase From 4e-33
2imo_A 423 Crystal Structure Of Allantoate Amidohydrolase From 2e-26
2v8v_A 474 Crystal Structure Of Mutant R322a Of Beta-Alanine S 8e-23
2v8g_A 474 Crystal Structure Of Beta-Alanine Synthase From Sac 8e-23
1r3n_A 462 Crystal Structure Of Beta-Alanine Synthase From Sac 9e-23
2v8d_A 474 Crystal Structure Of Mutant E159a Of Beta-Alanine S 4e-22
1r43_A 463 Crystal Structure Of Beta-Alanine Synthase From Sac 1e-21
>pdb|3N5F|A Chain A, Crystal Structure Of L-N-Carbamoylase From Geobacillus Stearothermophilus Cect43 Length = 408 Back     alignment and structure 
Iteration: 1

 Score =  183 bits (464), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 153/264 (57%), Gaps = 23/264 (8%)
Query: 7   RAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGI 66
           RA +L+  +M +AGL  + D  GN+ GR EG N  A  +L+GSHLD+V + G FDG LG+
Sbjct: 36  RAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNPDATVVLVGSHLDSVYNGGCFDGPLGV 95
Query: 67  ITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDK 126
           +  +  ++ +   G +     P+EV+AF+DEEG RF+   +GS A+AG LP  AL   D 
Sbjct: 96  LAGVEVVQTMNEHGVV--THHPIEVVAFTDEEGARFRFGMIGSRAMAGTLPPEALECRDA 153
Query: 127 SGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAG 186
            G+++ +A+++  +D   + L Q    P +V  Y+E+HIEQG VLE  G P+G+V GIAG
Sbjct: 154 EGISLAEAMKQAGLD--PDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAG 211
Query: 187 QTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXX 246
              +K T+ G   HAG  PMS+R+DPM AAA++I+++E   +                  
Sbjct: 212 LIWVKFTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR----------------- 254
Query: 247 XXXXXXVCTVGEISSWPSASNVIP 270
                 V TVG++  +P   NVIP
Sbjct: 255 --TGTTVGTVGQLHVYPGGINVIP 276
>pdb|1Z2L|A Chain A, Crystal Structure Of Allantoate-Amidohydrolase From E.Coli K12 In Complex With Substrate Allantoate Length = 423 Back     alignment and structure
>pdb|2IMO|A Chain A, Crystal Structure Of Allantoate Amidohydrolase From Escherichia Coli At Ph 4.6 Length = 423 Back     alignment and structure
>pdb|2V8V|A Chain A, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase From Saccharomyces Kluyveri Length = 474 Back     alignment and structure
>pdb|2V8G|A Chain A, Crystal Structure Of Beta-Alanine Synthase From Saccharomyces Kluyveri In Complex With The Product Beta- Alanine Length = 474 Back     alignment and structure
>pdb|1R3N|A Chain A, Crystal Structure Of Beta-Alanine Synthase From Saccharomyces Kluyveri Length = 462 Back     alignment and structure
>pdb|2V8D|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase From Saccharomyces Kluyveri Length = 474 Back     alignment and structure
>pdb|1R43|A Chain A, Crystal Structure Of Beta-Alanine Synthase From Saccharomyces Kluyveri (Selenomethionine Substituted Protein) Length = 463 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
3n5f_A 408 L-carbamoylase, N-carbamoyl-L-amino acid hydrolase 1e-109
1z2l_A 423 Allantoate amidohydrolase; ALLC, purine cataboli a 1e-106
2v8h_A 474 Beta-alanine synthase; amidohydrolase, alpha and b 4e-94
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1cg2_A 393 Carboxypeptidase G2; metallocarboxypeptidase, hydr 6e-09
1q7l_A198 Aminoacylase-1; catalysis, enzyme dimerization, si 3e-07
1rtq_A299 Bacterial leucyl aminopeptidase; bimetallic, zinc, 1e-06
3io1_A 445 Aminobenzoyl-glutamate utilization protein; peptid 1e-06
3khx_A 492 Putative dipeptidase sacol1801; DAPE, metallopepti 1e-05
1lfw_A 470 PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac 6e-05
3tx8_A 369 Succinyl-diaminopimelate desuccinylase; peptidase, 2e-04
1ysj_A 404 Protein YXEP; M20 family peptidase, dinuclear meta 4e-04
2qyv_A 487 XAA-His dipeptidase; YP_718209.1, structural genom 4e-04
3mru_A 490 Aminoacyl-histidine dipeptidase; metalloprotease, 6e-04
3kl9_A355 PEPA, glutamyl aminopeptidase; tetrahedral aminope 6e-04
3pb6_X330 Glutaminyl-peptide cyclotransferase-like protein; 6e-04
1xmb_A 418 IAA-amino acid hydrolase homolog 2; structural gen 7e-04
3pfo_A 433 Putative acetylornithine deacetylase; metal bindin 8e-04
2gre_A349 Deblocking aminopeptidase; structural genomi prote 9e-04
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} Length = 408 Back     alignment and structure
 Score =  321 bits (825), Expect = e-109
 Identities = 104/278 (37%), Positives = 154/278 (55%), Gaps = 24/278 (8%)

Query: 2   SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFD 61
           +    RA +L+  +M +AGL  + D  GN+ GR EG N  A  +L+GSHLD+V + G FD
Sbjct: 31  TAEERRAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNPDATVVLVGSHLDSVYNGGCFD 90

Query: 62  GSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSAL 121
           G LG++  +  ++ +   G       P+EV+AF+DEEG RF+   +GS A+AG LP  AL
Sbjct: 91  GPLGVLAGVEVVQTMNEHG--VVTHHPIEVVAFTDEEGARFRFGMIGSRAMAGTLPPEAL 148

Query: 122 RVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVV 181
              D  G+++ +A+++    +  + L Q    P +V  Y+E+HIEQG VLE  G P+G+V
Sbjct: 149 ECRDAEGISLAEAMKQ--AGLDPDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIV 206

Query: 182 QGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSN 241
            GIAG   +K T+ G   HAG  PMS+R+DPM AAA++I+++E   +             
Sbjct: 207 TGIAGLIWVKFTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARRTGT--------- 257

Query: 242 CSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLD 279
                      V TVG++  +P   NVIP       LD
Sbjct: 258 ----------TVGTVGQLHVYPGGINVIPERVE-FVLD 284
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A Length = 423 Back     alignment and structure
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A Length = 474 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Length = 393 Back     alignment and structure
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Length = 198 Back     alignment and structure
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Length = 299 Back     alignment and structure
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Length = 445 Back     alignment and structure
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Length = 492 Back     alignment and structure
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Length = 470 Back     alignment and structure
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Length = 369 Back     alignment and structure
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Length = 404 Back     alignment and structure
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} Length = 487 Back     alignment and structure
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} Length = 490 Back     alignment and structure
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae} Length = 355 Back     alignment and structure
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Length = 330 Back     alignment and structure
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A Length = 418 Back     alignment and structure
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Length = 433 Back     alignment and structure
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 Length = 349 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
3n5f_A 408 L-carbamoylase, N-carbamoyl-L-amino acid hydrolase 100.0
2v8h_A 474 Beta-alanine synthase; amidohydrolase, alpha and b 100.0
1z2l_A 423 Allantoate amidohydrolase; ALLC, purine cataboli a 100.0
3ram_A 394 HMRA protein; two-domain, catalytic (alpha-beta-al 100.0
3io1_A 445 Aminobenzoyl-glutamate utilization protein; peptid 100.0
1ysj_A 404 Protein YXEP; M20 family peptidase, dinuclear meta 100.0
3gb0_A 373 Peptidase T; NP_980509.1, aminopeptidase PEPT, pep 100.0
1vgy_A 393 Succinyl-diaminopimelate desuccinylase; structural 100.0
3ct9_A356 Acetylornithine deacetylase; NP_812461.1, A putati 100.0
1xmb_A 418 IAA-amino acid hydrolase homolog 2; structural gen 100.0
3pfo_A 433 Putative acetylornithine deacetylase; metal bindin 100.0
2rb7_A 364 Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat 100.0
3rza_A 396 Tripeptidase; phosphorylase/hydrolase-like, struct 100.0
3tx8_A 369 Succinyl-diaminopimelate desuccinylase; peptidase, 99.98
3isz_A 377 Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b 99.98
1cg2_A 393 Carboxypeptidase G2; metallocarboxypeptidase, hydr 99.98
3ife_A 434 Peptidase T; metallopeptidase, aminopeptidase, hyd 99.97
2pok_A 481 Peptidase, M20/M25/M40 family; M20 family peptidas 99.96
2f7v_A 369 Aectylcitrulline deacetylase; alpha/beta, hydrolas 99.96
1fno_A 417 Peptidase T; metallo peptidase, protease, hydrolas 99.96
2zog_A 479 Cytosolic non-specific dipeptidase; metallopeptida 99.96
3dlj_A 485 Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti 99.95
3mru_A 490 Aminoacyl-histidine dipeptidase; metalloprotease, 99.95
2qyv_A 487 XAA-His dipeptidase; YP_718209.1, structural genom 99.95
3pfe_A 472 Succinyl-diaminopimelate desuccinylase; metal bind 99.94
3khx_A 492 Putative dipeptidase sacol1801; DAPE, metallopepti 99.93
1lfw_A 470 PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac 99.92
1q7l_A198 Aminoacylase-1; catalysis, enzyme dimerization, si 99.71
4h2k_A269 Succinyl-diaminopimelate desuccinylase; DAPE, MCSG 99.69
1tkj_A284 Aminopeptidase, SGAP; double-zinc metalloproteinas 99.68
3tc8_A309 Leucine aminopeptidase; phosphorylase/hydrolase-li 99.65
3gux_A314 Putative Zn-dependent exopeptidase; aminopeptidase 99.64
3t68_A268 Succinyl-diaminopimelate desuccinylase; DAPE, csgi 99.63
1rtq_A299 Bacterial leucyl aminopeptidase; bimetallic, zinc, 99.62
2afw_A329 Glutaminyl-peptide cyclotransferase; alpha-beta pr 99.6
3pb6_X330 Glutaminyl-peptide cyclotransferase-like protein; 99.51
2fvg_A340 Endoglucanase; TM1049, structural genomics, joint 99.47
4fuu_A309 Leucine aminopeptidase; phosphorylase/hydrolase li 99.45
4f9u_A312 CG32412; alpha/beta hydrolase, PGlu formation, PE, 99.44
2gre_A349 Deblocking aminopeptidase; structural genomi prote 99.44
1vhe_A373 Aminopeptidase/glucanase homolog; structural genom 99.42
2wyr_A332 Cobalt-activated peptidase TET1; hydrolase, large 99.4
4fai_A330 CG5976, isoform B; alpha/beta hydrolase, PGlu form 99.35
2wzn_A354 TET3, 354AA long hypothetical operon protein FRV; 99.33
1y0y_A353 FRV operon protein FRVX; aminopeptidase, PDZ, hydr 99.32
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 99.3
1ylo_A348 Hypothetical protein SF2450; structural genomics, 99.23
1vho_A346 Endoglucanase; structural genomics, unknown functi 99.23
3kl9_A355 PEPA, glutamyl aminopeptidase; tetrahedral aminope 99.15
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 99.14
3cpx_A321 Aminopeptidase, M42 family; YP_676701.1, putative 99.02
2vpu_A354 TET3, 354AA long hypothetical operon protein FRV; 98.93
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 98.88
3isx_A343 Endoglucanase; TM1050, structural genomics, joint 98.78
3kas_A 640 Transferrin receptor protein 1; transferrin recept 98.78
3k9t_A435 Putative peptidase; structural genomics, joint cen 96.76
2ijz_A 428 Probable M18-family aminopeptidase 2; putative ami 93.14
1y7e_A 458 Probable M18-family aminopeptidase 1; aminopeptida 92.26
2glf_A 450 Probable M18-family aminopeptidase 1; putative, NY 89.44
2glj_A 461 Probable M18-family aminopeptidase 1; aminopeptida 80.5
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} Back     alignment and structure
Probab=100.00  E-value=8.1e-45  Score=342.64  Aligned_cols=262  Identities=40%  Similarity=0.709  Sum_probs=229.7

Q ss_pred             CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHcC
Q 022852            1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG   80 (291)
Q Consensus         1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~~   80 (291)
                      +|++|.++++||+++|+++|++++.|..+|++|+++|..++.|.|+|.+|+|+||.+|.+|+|+|++++|++++.|++.+
T Consensus        30 ~s~~e~~~~~~l~~~l~~~g~~~~~d~~gnv~a~~~g~~~~~~~i~l~aH~D~v~~~g~~d~~~g~a~~l~~~~~l~~~~  109 (408)
T 3n5f_A           30 FTAEERRAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNPDATVVLVGSHLDSVYNGGCFDGPLGVLAGVEVVQTMNEHG  109 (408)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCEEEECTTCCEEEEECCSSTTSCEEEEEEESCCCTTBCSSTTHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEcCCCCEEEEecCCCCCCCEEEEEecCCCCCCCCccCCHHHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999999999999886544689999999999999999999999999999999999988


Q ss_pred             CCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceeeE
Q 022852           81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGY  160 (291)
Q Consensus        81 ~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~  160 (291)
                      .  +++++|.|+|+++||+++|+.++.||+.+++.+.++.+.+.|.+|..+.+.|.+.|+.++.  +.+...++..+.++
T Consensus       110 ~--~~~~~i~~~~~~~EE~~~~~~g~~Gs~~~~~~~~~~~~~~~~~~G~~~~~~l~~~G~~~~~--~~~~~~~~~~~~~~  185 (408)
T 3n5f_A          110 V--VTHHPIEVVAFTDEEGARFRFGMIGSRAMAGTLPPEALECRDAEGISLAEAMKQAGLDPDR--LPQAARKPGTVKAY  185 (408)
T ss_dssp             C--CCSSCEEEEEESCSSCTTTTCCCHHHHHHHTCCCGGGGSCBCTTCCBHHHHHHHTTCCGGG--GGGGCCCTTTEEEE
T ss_pred             C--CCCCCEEEEEEcCccccccCCCCcCHHHHHcCCCHHHhhccCCCCCCHHHHHHHhCCChhh--hhhcccCccCccEE
Confidence            7  7899999999999998878778899999998887765677888999999999999997642  11111123367899


Q ss_pred             EEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCC
Q 022852          161 IEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRS  240 (291)
Q Consensus       161 ~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~  240 (291)
                      +++|++|++++++.+...+++.+++|..+++|+++|+++|||++||+.|+|||.++++++.+|+++..+           
T Consensus       186 ~~lhi~~g~~le~~~~~~gi~~~~~g~~~~~i~v~G~~~Hags~P~~~g~nAi~~aa~~i~~l~~~~~~-----------  254 (408)
T 3n5f_A          186 VELHIEQGRVLEETGLPVGIVTGIAGLIWVKFTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR-----------  254 (408)
T ss_dssp             EEEEECSSSHHHHHTCSEEEEEEECEEEEEEEEEECCCEETTTSCTTTCCCHHHHHHHHHHHHHHHHHH-----------
T ss_pred             EEEeeccchhHHHcCCCeEEEEEeccceEEEEEEEEEcCcCCCCccccccCHHHHHHHHHHHHHHHHHh-----------
Confidence            999999999888777788999999999999999999999976899448999999999999999988632           


Q ss_pred             CccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852          241 NCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY  286 (291)
Q Consensus       241 ~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~  286 (291)
                             . .++++++|.|++|+.+.|+||++|+ +.+|+|+++..
T Consensus       255 -------~-~~~~~~vg~i~gG~~~~NvIP~~a~-~~~diR~~~~~  291 (408)
T 3n5f_A          255 -------T-GTTVGTVGQLHVYPGGINVIPERVE-FVLDLRDLKAE  291 (408)
T ss_dssp             -------H-SSCEEEEEEEEEESCCTTEECSEEE-EEEEEEESSHH
T ss_pred             -------c-CCcEEEEEEEEecCCCCcCcCCeEE-EEEEEeCCCHH
Confidence                   1 2789999999998789999999999 99999998643
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A Back     alignment and structure
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A Back     alignment and structure
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} Back     alignment and structure
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Back     alignment and structure
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A Back     alignment and structure
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Back     alignment and structure
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Back     alignment and structure
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Back     alignment and structure
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Back     alignment and structure
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} Back     alignment and structure
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Back     alignment and structure
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A Back     alignment and structure
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Back     alignment and structure
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Back     alignment and structure
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} Back     alignment and structure
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} Back     alignment and structure
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Back     alignment and structure
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Back     alignment and structure
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Back     alignment and structure
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae} Back     alignment and structure
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Back     alignment and structure
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Back     alignment and structure
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A Back     alignment and structure
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Back     alignment and structure
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Back     alignment and structure
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Back     alignment and structure
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A* Back     alignment and structure
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A Back     alignment and structure
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A* Back     alignment and structure
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A Back     alignment and structure
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima} Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum} Back     alignment and structure
>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa} Back     alignment and structure
>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima} Back     alignment and structure
>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 291
d1r3na1322 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta- 4e-45
d1z2la1293 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydro 6e-39
d1z2la2117 d.58.19.1 (A:213-329) Allantoate amidohydrolase Al 4e-08
d1cg2a2113 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudom 1e-06
d1r3na2116 d.58.19.1 (A:248-363) Peptidase-like beta-alanine 2e-06
d1vhea2275 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein Y 5e-06
d3bi1a3304 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypep 1e-05
d1rtqa_291 c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolyti 3e-05
d1de4c3294 c.56.5.5 (C:122-189,C:383-608) Transferrin recepto 3e-04
d1y0ya2255 c.56.5.4 (A:164-351,A:6-72) Frv operon protein Frv 3e-04
d1tkja1277 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces gr 0.001
d2fvga2255 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 { 0.002
>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 322 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Peptidase-like beta-alanine synthase, catalytic domain
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

 Score =  152 bits (386), Expect = 4e-45
 Identities = 49/216 (22%), Positives = 86/216 (39%), Gaps = 3/216 (1%)

Query: 2   SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFD 61
           +       +      E  G +  VD +GN+     G     +    GSHLDT  +AG +D
Sbjct: 50  TALDGAMRDWFTNECESLGCKVKVDKIGNMFAVYPG-KNGGKPTATGSHLDTQPEAGKYD 108

Query: 62  GSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSAL 121
           G LG++  +  L+  K           V V+ + +EEG RF  +  GS+  +  L +   
Sbjct: 109 GILGVLAGLEVLRTFKDNN--YVPNYDVCVVVWFNEEGARFARSCTGSSVWSHDLSLEEA 166

Query: 122 RVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVV 181
                 G    +++ ++  +I         Y    +  + E+HIEQGP+LE     +G+V
Sbjct: 167 YGLMSVGEDKPESVYDSLKNIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIV 226

Query: 182 QGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAA 217
            G+      +V +      A       +   + + A
Sbjct: 227 TGVQAVNFHEVCIECVSRSAFAQFKKDQVRQIWSGA 262
>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Length = 293 Back     information, alignment and structure
>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]} Length = 117 Back     information, alignment and structure
>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]} Length = 113 Back     information, alignment and structure
>d1r3na2 d.58.19.1 (A:248-363) Peptidase-like beta-alanine synthase {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 116 Back     information, alignment and structure
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} Length = 275 Back     information, alignment and structure
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Length = 304 Back     information, alignment and structure
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Length = 291 Back     information, alignment and structure
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 294 Back     information, alignment and structure
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 255 Back     information, alignment and structure
>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Length = 277 Back     information, alignment and structure
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} Length = 255 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
d1r3na1322 Peptidase-like beta-alanine synthase, catalytic do 100.0
d1z2la1293 Allantoate amidohydrolase AllC catalytic domain {E 100.0
d1vgya1262 Succinyl-diaminopimelate desuccinylase, catalytic 99.89
d1ysja1261 Protein YxeP {Bacillus subtilis [TaxId: 1423]} 99.74
d1vgya2113 Succinyl-diaminopimelate desuccinylase {Neisseria 99.73
d1cg2a2113 Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 99.72
d1xmba1273 IAA-amino acid hydrolase, catalytic domain {Mouse- 99.72
d1xmba2119 IAA-amino acid hydrolase {Mouse-ear cress (Arabido 99.71
d1ysja2115 Protein YxeP {Bacillus subtilis [TaxId: 1423]} 99.69
g1q7l.1280 Aminoacylase-1, catalytic domain {Human (Homo sapi 99.69
d1vhea2275 Hypothetical protein YsdC, catalytic domain {Bacil 99.67
d1r3na2116 Peptidase-like beta-alanine synthase {Yeast (Sacch 99.67
d1tkja1277 Aminopeptidase {Streptomyces griseus [TaxId: 1911] 99.67
d1cg2a1276 Carboxypeptidase G2, catalytic domain {Pseudomonas 99.65
d1z2la2117 Allantoate amidohydrolase AllC {Escherichia coli [ 99.64
d2fvga2255 Endoglucanase TM1049 {Thermotoga maritima [TaxId: 99.62
d1vhoa2248 Putative endoglucanase TM1048, catalytic domain {T 99.58
d2grea2233 Deblocking aminopeptidase YhfE {Bacillus cereus [T 99.58
d1yloa2264 Aminopeptidase YpdE {Shigella flexneri [TaxId: 623 99.58
d1rtqa_291 Aminopeptidase {Aeromonas proteolytica [TaxId: 671 99.51
d1lfwa1272 Aminopeptidase PepV {Lactobacillus delbrueckii [Ta 99.44
d2afwa1329 Glutaminyl-peptide cyclotransferase, QPCT {Human ( 99.4
d1de4c3294 Transferrin receptor ectodomain, protease-like dom 99.36
d1fnoa4295 Peptidase T (tripeptidase), catalytic domain {Salm 99.35
d3bi1a3304 Glutamate carboxypeptidase II FOLH1 {Human (Homo s 99.31
d1lfwa2196 Aminopeptidase PepV {Lactobacillus delbrueckii [Ta 99.15
d1fnoa3113 Peptidase T (tripeptidase) {Salmonella typhimurium 95.76
d1y0ya2255 Frv operon protein FrvX, catalytic domain {Pyrococ 93.5
d1y7ea2322 Probable aminopeptidase ApeA {Borrelia burgdorferi 91.92
>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Peptidase-like beta-alanine synthase, catalytic domain
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=100.00  E-value=1.9e-38  Score=283.46  Aligned_cols=194  Identities=26%  Similarity=0.385  Sum_probs=178.2

Q ss_pred             CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHcC
Q 022852            1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG   80 (291)
Q Consensus         1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~~   80 (291)
                      ||.+|.++.+||++||+++|+++++|.+||+|++++|..+. ++|+++||+||||.||.+|+..|++++|++++.|++.+
T Consensus        49 ~S~~d~~ar~~l~~~~~~~Gl~v~~D~~GNv~g~~~G~~~~-~~v~~GSHlDTVp~GG~~DG~lGV~a~Levl~~l~e~~  127 (322)
T d1r3na1          49 GTALDGAMRDWFTNECESLGCKVKVDKIGNMFAVYPGKNGG-KPTATGSHLDTQPEAGKYDGILGVLAGLEVLRTFKDNN  127 (322)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCEEEEBTTSCEEEEECCSSCS-SCEEEEECCCCCSSBCSSTTHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEeCCCcEEEEecCCCCC-CceEecCccccCCcCCCcCCccchHHHHHHHHHHhhhc
Confidence            68999999999999999999999999999999999997654 66999999999999999999999999999999999999


Q ss_pred             CCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchh----hhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCc
Q 022852           81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPAS  156 (291)
Q Consensus        81 ~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~----~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~  156 (291)
                      +  +++++|.|+++.+||+++|+++++||+.+++.+..+.    +...|.+|+++.++|.+.|+.++..    ...+++.
T Consensus       128 ~--~~~~~i~vv~f~~EEg~rFg~~~lGS~~~~G~l~~~~~~~l~~~~d~~G~~l~~al~~~G~~~~~~----~~~~~~~  201 (322)
T d1r3na1         128 Y--VPNYDVCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLMSVGEDKPESVYDSLKNIGYIGDTP----ASYKENE  201 (322)
T ss_dssp             C--CCSSCEEEEECSCSSCSSBSSTTHHHHHHTTSSCHHHHHTCBBSSCSSCCBHHHHHHHTTCCCSBC----CSTTTSC
T ss_pred             c--CCCCCcEEEEeeccccccccccccccccccCCCCHHHHhhhhccccchhhhHHHHHHhcCcccccc----ccccccc
Confidence            8  8999999999999999999999999999999988643    3567899999999999999987531    2344567


Q ss_pred             eeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCC
Q 022852          157 VWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHA  201 (291)
Q Consensus       157 i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHa  201 (291)
                      +.+|||+||||||+|+..+.++|+|++..|..|++|+++|.+.|+
T Consensus       202 i~a~lElHIEQGpvLe~~~~~IGVVtgI~G~~~~~v~~~g~a~~~  246 (322)
T d1r3na1         202 IDAHFELHIEQGPILEDENKAIGIVTGVQAVNFHEVCIECVSRSA  246 (322)
T ss_dssp             CSEEEEEEECSSSHHHHTTCSEEEEEEECCEECCHHHHHHHHHHH
T ss_pred             eeEEEEEEEcCChhHHHCCCCeeccccccceeEEEeeccccccch
Confidence            999999999999999999999999999999999999999999995
>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]} Back     information, alignment and structure
>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1r3na2 d.58.19.1 (A:248-363) Peptidase-like beta-alanine synthase {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Back     information, alignment and structure
>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Back     information, alignment and structure
>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Back     information, alignment and structure
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Back     information, alignment and structure
>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Back     information, alignment and structure
>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]} Back     information, alignment and structure