Citrus Sinensis ID: 022870

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCVI
Secondary Structure (PSIPRED)
ccccccccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEccccccccEEEEEEEccccccEEEEEEccccEEEEEcccccccccccEEEEEccEEEEEEEEcccccEEEEcccccEEEEEcccccEEEcccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEcccccccccccccccccccEEEEEEEcccccccccEEEEEEccccEEEEEcccccEEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEccccccccccccEEEEEEcccccccEEEEcccccEEEEEEcccccccccccEEEccccccEEccEEEccccccEEEEEccccccEEEEEcccccccccccccccccccccEEEEEccccccEEEEEEcccccEEEEEcccccccccccccccccEEEEEEEccccccccEEEEEEccccEEEEEEcccccEEccccccccccEEEEEEcccccEEEEcccccEEEEEEEccccccEEEc
Coil and Loop (DISEMBL)
mskrppppdpvavlrghrasvtdvcfhqtkpilfagttggelriWDTVQHRTVSSSWVHSAAHGIVsvatgpsiglnkvisqgrdgtvkcwdiengglssnpsltiktnsyhFCKLSLvkepyanakqanepkdcyerevgetvdtdslcdskddvpaegpkYMAVAGEQLSEVEIWDLNTAErctrlhqnscggspnfsskgrGMCMAVQaylpsksqGFVNVLagyedgsilvwdirnpgipltamkVHLEPVLCLsidescnggisggadQKIVLYNldhstvshcvi
Flexible Loop (DISEMBL)
mskrppppdpvAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGglssnpsltiKTNSYHFCKLSLVKEPYanakqanepkdcyerEVGEtvdtdslcdskddVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYnldhstvshcvi
Low Complexity Region (SEG)
MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCVI
Disordered region (IsUnstruct)
************VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA**************************************YMAVAGEQLSEVEIWDLNTAERCTRLHQNSC**********RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC**
Disordered Region (DISOPRED)
****PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCVI
Disordered Region (DISEMBL)
**********VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCVI
Disordered Region (DISPRO)
*****PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCVI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q54HW5	359	Guanine nucleotide-bindin	yes	no	0.817	0.662	0.260	5e-22
Q9EQ15	326	Guanine nucleotide-bindin	yes	no	0.780	0.696	0.257	1e-15
Q9BYB4	327	Guanine nucleotide-bindin	yes	no	0.728	0.648	0.244	1e-11
A7UWE6	485	ASTRA-associated protein	N/A	no	0.824	0.494	0.238	3e-09
A4RJA0	469	ASTRA-associated protein	N/A	no	0.786	0.488	0.241	9e-08
A2RA56	440	ASTRA-associated protein	yes	no	0.824	0.545	0.245	2e-06
P41318	303	Target of rapamycin compl	yes	no	0.292	0.280	0.322	4e-06
Q92636	917	Protein FAN OS=Homo sapie	no	no	0.577	0.183	0.262	8e-06
B8NG55	429	ASTRA-associated protein	N/A	no	0.735	0.498	0.219	8e-06
A7ESR0	503	ASTRA-associated protein	N/A	no	0.896	0.518	0.235	2e-05

>sp|Q54HW5|GNB1L_DICDI Guanine nucleotide-binding protein subunit beta-like protein 1 homolog OS=Dictyostelium discoideum GN=gnb1l PE=4 SV=1

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 133/299 (44%), Gaps = 61/299 (20%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAA--HG 64
           PDP  +LRGH+ +V  V F +  P +L++G+  GEL++W+  + + +S+   HS     G
Sbjct: 13  PDPYYILRGHKFNVNSVLFDKVNPNLLYSGSGDGELKLWNIEEKKCISTQIAHSEGIGGG 72

Query: 65  IVSVATGPSIGLN-----------KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF 113
           ++S+    +   N            ++SQGRDG +K W I +     N +  ++TNS   
Sbjct: 73  VLSLQWLSNDNNNENNNNNDEICGNILSQGRDGVIKIWSIIDNCTFKN-TYRLETNS--- 128

Query: 114 CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173
             LSL K                             C S                   S+
Sbjct: 129 --LSLGK-----------------------------CSSLSSNLLSISGSAIDPTSSTSQ 157

Query: 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-------VNVLA 226
           VEIWDL   +   +L  N+            G+ M+++ Y  +++          + +  
Sbjct: 158 VEIWDLKNKQVINKLKPNNQQLFEKL-----GLPMSLKLYYENENNDNSNQSNDQIRLCT 212

Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285
           GYE+G +L+WD+RN  IPL + K+H EP+L  ++  +   GISG  D  I+ +N+++ +
Sbjct: 213 GYENGELLIWDLRNTSIPLVSSKLHNEPILSFALSNNSTKGISGSGDTNIIEFNINYES 271

Dictyostelium discoideum (taxid: 44689)

>sp|Q9EQ15|GNB1L_MOUSE Guanine nucleotide-binding protein subunit beta-like protein 1 OS=Mus musculus GN=Gnb1l PE=2 SV=2

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 56/283 (19%)

Query: 5   PPPPDPVAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
           PPPP P  VLRG +++V  + F         P+LF+G+  G + IW ++Q R + ++   
Sbjct: 6   PPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIW-SLQTRRIVTTLNG 64

Query: 60  SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
               G++ + T P    ++++SQGRD  +  WD+E G  +   S  ++ +S  FC+ S++
Sbjct: 65  HGGQGVIWLKTLPQG--HQLLSQGRDLRLCLWDLEEGRNTIMDS--VQLDSVGFCRGSIL 120

Query: 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179
                    A   K   E ++ E     S+C  K +  A     M +         +W  
Sbjct: 121 VRGQQCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADARPGMPMCLG--------LWQT 172

Query: 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239
           N++ R                                       +LAGYEDGS+ +WDI 
Sbjct: 173 NSSLRPL-------------------------------------LLAGYEDGSVTLWDIS 195

Query: 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
              +  + +  H EPV+ L  D     GISG A + + +++LD
Sbjct: 196 ERKV-CSQITCHEEPVMGLDFDSQKAKGISGSAGKVLAVWSLD 237

Mus musculus (taxid: 10090)

>sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein subunit beta-like protein 1 OS=Homo sapiens GN=GNB1L PE=1 SV=2

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 114/286 (39%), Gaps = 74/286 (25%)

Query: 11  VAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSS---------S 56
             VLRG ++ V  + F      Q +P+LF+G+  G + IW     R V++         +
Sbjct: 13  QFVLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGHGGQCVT 72

Query: 57  WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116
           W+ +   G             +++SQGRD  +  WD+  G  +   S+ ++  S  FC+ 
Sbjct: 73  WLQTLPQG------------RQLLSQGRDLKLCLWDLAEGRSAVVDSVCLE--SVGFCRS 118

Query: 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176
           S++         A   +   E ++ E     S+C  K       PK  A  G  +     
Sbjct: 119 SILAGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALK-------PKADAKLGMPM----- 166

Query: 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236
                   C RL Q  C   P                          +LAGYEDGS+++W
Sbjct: 167 --------CLRLWQADCSSRP-------------------------LLLAGYEDGSVVLW 193

Query: 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
           D+    +  + +  H EPV+ L  D     GISG A + + +++LD
Sbjct: 194 DVSEQKV-CSRIACHEEPVMDLDFDSQKARGISGSAGKALAVWSLD 238

Homo sapiens (taxid: 9606)

>sp|A7UWE6|ASA1_NEUCR ASTRA-associated protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=asa-1 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 120/298 (40%), Gaps = 58/298 (19%)

Query: 7   PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV 66
           PP P ++LRGH+A V    F +    L  G   G +  WD    R  +    H  A  I+
Sbjct: 7   PPTPKSILRGHKAQVHAATFIRNNERLVTGDADGFVIAWDLTIMRPRAVWQAHDNA--IL 64

Query: 67  SVATGPSIGLNKVISQGRDGTVKCWDI---ENGGLSSNPSL--------------TIKTN 109
            +A     G +++I+ GRD  +  W +   +   +S+   L               ++ N
Sbjct: 65  GIA---GWGNDRIITHGRDNKLIVWKLIGDDEARMSTTLPLDPCAEPRPKPWILHLLEVN 121

Query: 110 SYHFCKLSL--VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167
           + +FC  S   V  P    +Q  + +D  +    E+                    +AV 
Sbjct: 122 TMNFCSFSYCPVSAPVLPGQQEGQSQDTAQESRFES-----------------ELLIAVP 164

Query: 168 GEQLSE-VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226
               SE ++I+ L +    TR H    G          GM MAV  +  + S   + ++A
Sbjct: 165 NTLASEAIDIFHLPSQ---TRRHTVKLGDK-------NGMVMAVALFNQADS---LTLVA 211

Query: 227 GYEDGSILVWD---IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
           GYE+G  +V     ++N  +PL     H +P+L LS+  + +  ++  AD  I  + L
Sbjct: 212 GYENGLAIVAHRDPVKNDWVPLYQATCHSQPILSLSVSPARDFFLTSSADAVIAKHPL 269

Component of the ASTRA complex involved in chromatin remodeling.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|A4RJA0|ASA1_MAGO7 ASTRA-associated protein 1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=asa1 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 116/290 (40%), Gaps = 61/290 (21%)

Query: 7   PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV 66
           P  P ++LRGH+A V    F +    L  G   G + +WD    R   + W    AH  V
Sbjct: 12  PAHPRSILRGHKAQVHAAAFVRNNERLVTGDADGFVVVWDLTIMRP-RAVW---RAHDDV 67

Query: 67  SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA 126
            +  G   G +++I+ GRD  +  W +      S                +L  +P A  
Sbjct: 68  LLGIG-GWGTDRLITHGRDNKLIVWQLREADEDS-------------LAKTLPVDPAAED 113

Query: 127 KQANEPKDCYEREVGETVD--TDSLCDSKDDVPAEGPKYMAVAGEQLSE--VEIWDLNTA 182
           +   +P   Y  E+  T++  T SLC+   D  +E  + +      LS   ++I+ L + 
Sbjct: 114 RP--KPWLLYMLEIS-TMNFCTFSLCEMSSDPLSEDREALIAVPNTLSSEAIDIFHLPSQ 170

Query: 183 ER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV----- 235
           +R    RL Q+             GM MA++ +   +  G+  V  GYE+G  LV     
Sbjct: 171 KREHTIRLGQSE------------GMVMALELF---RVDGYFTVAVGYENGVALVAQQAE 215

Query: 236 --------WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIV 277
                   W++R         K H +PVL L +    +  ++  AD  ++
Sbjct: 216 RSETPVGTWNVRYRS------KAHTQPVLSLDVSLGRDFFLTSSADSLLI 259

Component of the ASTRA complex involved in chromatin remodeling.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

>sp|A2RA56|ASA1_ASPNC ASTRA-associated protein 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=asa1 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 119/309 (38%), Gaps = 69/309 (22%)

Query: 4   RPPPPDPVAVLRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA 62
           R PP  P  +LRGH A++  +  FHQ    L +G   G + +WD V  R   ++W   A 
Sbjct: 9   RQPPATPTYILRGHAAAIHALQIFHQNLR-LVSGDADGWIVVWDLVSKRP-RATW--KAH 64

Query: 63  HGIVSVATGPSIG---LNKVISQGRDGTVKCW----------------DIE--NGGLSSN 101
            G V    G S G   + +V + GRD  ++ W                DIE  +   +S 
Sbjct: 65  DGTVLEVKGFSFGNGAVTEVFTHGRDHKLRVWRFSLQDEESLQKVLPVDIEKTSSTAASQ 124

Query: 102 PSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159
           P L  ++  N+ +FC  S+V  P   A  A++  +  +    E     S+  +  +    
Sbjct: 125 PWLVHSLPVNALNFCAFSMVFLPPDKANTASDASEAPK----ENTSLSSVLIAVPNALNS 180

Query: 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 219
           G             ++++ L    R   +        P  +    GM MA  A L     
Sbjct: 181 G------------AIDLFHLPQERRICTI--------PADTEVQTGMVMA--ANLVISPS 218

Query: 220 GFVNVLAGYEDGSILVWDIR----------NPGIP-----LTAMKVHLEPVLCLSIDESC 264
           G + V + YEDG ++V   R          +   P     L   + H +PVL L +  + 
Sbjct: 219 GELYVASAYEDGRVMVHGCRGSLQEKDLTQSTKTPWKWEKLYVCRAHSQPVLSLHVSPAG 278

Query: 265 NGGISGGAD 273
           N   S  AD
Sbjct: 279 NYFFSSSAD 287

Component of the ASTRA complex involved in chromatin remodeling.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|P41318|LST8_YEAST Target of rapamycin complex subunit LST8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LST8 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 4   RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
           R   P+PVA   GHR +VT V F Q    +   +  G +++WD V+  ++  ++ H+A  
Sbjct: 61  RTTNPNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDGTIKVWD-VRSPSIPRNYKHNAP- 118

Query: 64  GIVSVATGPSIGLNKVISQGRDGTVKCWDI 93
            +  V   P+ G  ++IS  RDG ++ WD+
Sbjct: 119 -VNEVVIHPNQG--ELISCDRDGNIRIWDL 145

Essential component of both TORC1 and TORC2. TORC1 regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. LST8 is involved in the negative regulation of transcription factors GLN3 and RTG1-RTG3, limiting the synthesis of alpha-ketoglutarate, glutamate and glutamine. LST8 is required for targeting of amino acid permeases (AAPs) to the plasma membrane. TORC2 regulates cell cycle-dependent polarization of the actin-cytoskeleton, cell wall integrity, and receptor endocytosis. TORC2 controls polarity of the actin cytoskeleton, which is required for orienting the secretory pathway toward discrete growth sites, via the RHO1/PKC1/MAPK cell integrity pathway. LST8 is involved in maintenance of cell wall integrity. LST8 modulates TOR2 kinase activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q92636|FAN_HUMAN Protein FAN OS=Homo sapiens GN=NSMAF PE=1 SV=2

 Score = 51.2 bits (121), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 92/232 (39%), Gaps = 64/232 (27%)

Query: 77  NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY 136
           N++ S   D TVK W       S  P+    T  +HF  L+                   
Sbjct: 725 NRLYSASWDSTVKVW-------SGVPAEMPGTKRHHFDLLA------------------- 758

Query: 137 EREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG- 195
           E E   +VDT SL              + V+G +   V IWDL TA   T +HQ  C   
Sbjct: 759 ELEHDVSVDTISL---------NAASTLLVSGTKEGTVNIWDLTTA---TLMHQIPCHSG 806

Query: 196 ----------SPNFSSKGRGMC---------MAVQAYLPSKSQG-FV----NVLAGYEDG 231
                     S +  S G   C         M + +    + Q  FV    +VL+G + G
Sbjct: 807 IVCDTAFSPDSRHVLSTGTDGCLNVIDVQTGMLISSMTSDEPQRCFVWDGNSVLSGSQSG 866

Query: 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283
            +LVWD+    I    ++ H   V C+ ++E C+  I+GG D++I+ + L +
Sbjct: 867 ELLVWDLLGAKIS-ERIQGHTGAVTCIWMNEQCSSIITGGEDRQIIFWKLQY 917

Couples the p55 TNF-receptor (TNF-R55 / TNFR1) to neutral sphingomyelinase (N-SMASE). Specifically binds to the N-smase activation domain of TNF-R55. May regulate ceramide production by N-SMASE.

Homo sapiens (taxid: 9606)

>sp|B8NG55|ASA1_ASPFN ASTRA-associated protein 1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=asa1 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 95/255 (37%), Gaps = 41/255 (16%)

Query: 6   PPPDPVAVLRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG 64
           PP  P  +LRGH + +  +  FHQ    L +G   G + +WD V  R V+    H  A  
Sbjct: 9   PPASPTYILRGHASPIHGLHIFHQNLR-LISGDADGWIIVWDLVFKRPVAVWKAHEGAIL 67

Query: 65  IVSVATGPSIGLNKVISQGRDGTVKCWDI------------------ENGGLSSNPSL-- 104
            V   T  +  + +V + GRD  +  W                    +N   ++ P L  
Sbjct: 68  EVKGFTFSNQTVTEVYTHGRDHKLCVWRFRAQDEDLLQKTLPVDISEQNQSQATQPWLVH 127

Query: 105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164
           ++  N+ +FC  S++      +    EP         E  D  S      + P     + 
Sbjct: 128 SLPVNALNFCAFSMLFLDEEESPDTGEP---------EASDKTSTQSPGKNPPQHHSLFA 178

Query: 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224
                    ++I+ L    R   +        P   +   GM MAV  +  S  + ++  
Sbjct: 179 VPNALNSGAIDIFHLPRERRLCTI--------PADQTTQTGMVMAVTLFYSSTRELYIA- 229

Query: 225 LAGYEDGSILVWDIR 239
            + YEDG ++V+ +R
Sbjct: 230 -SAYEDGHVMVFALR 243

Component of the ASTRA complex involved in chromatin remodeling.

Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) (taxid: 332952)

>sp|A7ESR0|ASA1_SCLS1 ASTRA-associated protein 1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=asa1 PE=3 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 130/318 (40%), Gaps = 57/318 (17%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MS  P  P P  +LRGH   +    F +    L  G   G + +W     R V+  W   
Sbjct: 1   MSIPPGAPQPSYILRGHATPIHVAKFIRGNTRLITGDAEGWVVLWSLETRRGVAV-W--- 56

Query: 61  AAHGIVSVATGPSIGLNK-VISQGRDGTVKCWDI---ENGGLSS------------NPSL 104
            AHG V +  G      + +++ G+D  +  W +   E   +S              P +
Sbjct: 57  RAHGGVLLGVGEWGERGEGIVTHGKDNKLIIWKLPPSEEDSMSKILPVDTVSEERRKPWI 116

Query: 105 --TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162
              +  N+ +FC  ++   P     + N P +  ER              KDD    G +
Sbjct: 117 LHILDVNTMNFCAFAMC--PIVT--EVN-PAEHEER-------------GKDDEAQLGME 158

Query: 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR---GMCMAVQAYLPSKSQ 219
           +   + EQL  + + ++ T+E     H  +     N  S G    GM M++  +    ++
Sbjct: 159 WEGESEEQLL-IAVPNILTSESIDIFHIPTLHRIHNIPSPGPDKPGMIMSLSLFFHPITK 217

Query: 220 GFVNVLAGYEDGSILVWDIRNPGI----------PLTAMKVHLEPVLCLSIDESCNGG-- 267
             + V++GYEDGS+ V+ + +P             +   K H++P+L LS+D   +    
Sbjct: 218 -CLTVISGYEDGSVSVFALSSPSTRTPSSPEQWNTIYQSKSHIQPILSLSVDPGRDRKFF 276

Query: 268 ISGGADQKIVLYNLDHST 285
           I+ GAD +I+ Y +  +T
Sbjct: 277 ITSGADDRIIKYLIPATT 294

Component of the ASTRA complex involved in chromatin remodeling.

Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (taxid: 665079)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
359492190	382	PREDICTED: guanine nucleotide-binding pr	0.993	0.756	0.658	1e-110
224104761	387	predicted protein [Populus trichocarpa]	0.993	0.746	0.649	1e-105
255562629	441	conserved hypothetical protein [Ricinus	0.996	0.657	0.620	1e-102
297799000	386	EMB2757 [Arabidopsis lyrata subsp. lyrat	0.982	0.740	0.597	8e-97
449449559	383	PREDICTED: guanine nucleotide-binding pr	0.972	0.738	0.604	9e-97
42567255	386	transducin/WD40 domain-containing protei	0.993	0.748	0.596	9e-96
323511860	375	decreased size exclusion limit 1 [Nicoti	0.982	0.762	0.625	1e-95
356517988	387	PREDICTED: ASTRA-associated protein 1-li	0.993	0.746	0.567	6e-94
357466905	285	Guanine nucleotide-binding protein subun	0.965	0.985	0.577	6e-91
357466903	364	Guanine nucleotide-binding protein subun	0.962	0.769	0.580	1e-89

>gi|359492190|ref|XP_002278969.2| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Vitis vinifera] gi|302142603|emb|CBI19806.3| unnamed protein product [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/302 (65%), Positives = 240/302 (79%), Gaps = 13/302 (4%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRPPP DPVAVLRGHRASVTDVCFH +  ILF G++ GELRIWDTVQHRTVSS+WVHS
Sbjct: 1   MSKRPPP-DPVAVLRGHRASVTDVCFHPSNSILFTGSSDGELRIWDTVQHRTVSSAWVHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHG+V VA  P IG NK++SQGRDGTVK WDIE GGLS +PSLTIKTN+YHFCKLSL+K
Sbjct: 60  AAHGVVCVAASPLIGDNKLVSQGRDGTVKYWDIEEGGLSRSPSLTIKTNAYHFCKLSLMK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDS-----------KDDVPAEGPKYMAVAGE 169
           +P A A+QA  PK  ++ +V +TVD + L DS            D   AEGPKY+A+AGE
Sbjct: 120 KPCACARQAEGPKHYHDMDVKDTVDAEMLNDSSGKAQESLTECSDAAHAEGPKYVAIAGE 179

Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
           Q SEVEIWDLNTAER  +L Q   GGS N+ +K RGMCMAVQA+LPS+SQGF+N+L+GYE
Sbjct: 180 QSSEVEIWDLNTAERIAQLPQKCLGGSSNYCTKSRGMCMAVQAFLPSESQGFLNILSGYE 239

Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289
           DG+++ WDIRNPGIP+T++K HLEP+L + +D SC+GGISG AD KIV++ LD+   S C
Sbjct: 240 DGTMVWWDIRNPGIPITSVKFHLEPILSICLDGSCSGGISGAADNKIVIFGLDNPMGS-C 298

Query: 290 VI 291
           V+
Sbjct: 299 VV 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104761|ref|XP_002313556.1| predicted protein [Populus trichocarpa] gi|222849964|gb|EEE87511.1| predicted protein [Populus trichocarpa]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/305 (64%), Positives = 233/305 (76%), Gaps = 16/305 (5%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRP P DPVAVLRGHRASV D  FH +KP+LF G+T GELRIWDTVQHRTVSSS VHS
Sbjct: 1   MSKRPAP-DPVAVLRGHRASVMDASFHPSKPLLFTGSTDGELRIWDTVQHRTVSSSRVHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+SVA  P IG NKVISQGRDGTVKCWDI+NGGLS  PSLTIKTN+YHFCKLSLVK
Sbjct: 60  AAHGIISVAASPLIGDNKVISQGRDGTVKCWDIDNGGLSREPSLTIKTNAYHFCKLSLVK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSK--------------DDVPAEGPKYMAV 166
           +P ++ +Q   P   +E++  ETVDT+SL +                +D+ A+G KY+AV
Sbjct: 120 KPNSSVRQGEGPNYKHEKDDTETVDTNSLGNKGINYEEDPVECSNPLEDLHADGSKYIAV 179

Query: 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226
           AGEQ SEVEIWDLNTAER  RL Q+  GGS N S+  RGMCMAVQA+LPS+SQGF+ +L 
Sbjct: 180 AGEQSSEVEIWDLNTAERLARLPQSCIGGSSNISTNKRGMCMAVQAFLPSESQGFLYILV 239

Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286
           GYEDGS+L+WD+RNPG  + ++K H EPVL L +D  C+GGISG AD KI LY+LD S V
Sbjct: 240 GYEDGSMLLWDMRNPGAFVNSVKFHTEPVLSLCVDGLCSGGISGAADDKIALYSLDVS-V 298

Query: 287 SHCVI 291
             CV+
Sbjct: 299 GSCVM 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562629|ref|XP_002522320.1| conserved hypothetical protein [Ricinus communis] gi|223538398|gb|EEF40004.1| conserved hypothetical protein [Ricinus communis]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/306 (62%), Positives = 230/306 (75%), Gaps = 16/306 (5%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           M KRPPPPDP+ VLRGHRASVTD CFH +KPILF G+  GELRIWDTVQHRT+SS+WVHS
Sbjct: 1   MIKRPPPPDPITVLRGHRASVTDACFHPSKPILFTGSADGELRIWDTVQHRTISSAWVHS 60

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+S+A+    G +KVISQG+DGTVK WDI+ GGLS  P +TI+TNSYHFCKLSLVK
Sbjct: 61  AAHGIISIASCNLNGNDKVISQGKDGTVKLWDIQEGGLSRVPVVTIRTNSYHFCKLSLVK 120

Query: 121 EPYANAKQANEPKDCYEREVGETVDTD-------------SLC--DSKDDVPAEGPKYMA 165
           +P         P   +E E  ETVDT+             S C  DS++D   +  K +A
Sbjct: 121 KPGDKVVHDKGPNHQHEIEALETVDTNVSYDRENRHNENSSKCSSDSEEDKHIDVLKCVA 180

Query: 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225
           +AGEQ SEVEIWDLNTAER +RL QN  GGS + +++ RGMCMAVQA+LPS+SQGF+N+L
Sbjct: 181 IAGEQSSEVEIWDLNTAERISRLAQNCSGGSSSITTQKRGMCMAVQAFLPSESQGFLNLL 240

Query: 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285
           AGYEDGS+L WD+R+PG+PLT++K H EPVL L ID  C GGISG AD KIVL++LD+  
Sbjct: 241 AGYEDGSMLWWDMRSPGVPLTSVKFHTEPVLSLCIDGWCTGGISGAADDKIVLFSLDN-C 299

Query: 286 VSHCVI 291
           +  CVI
Sbjct: 300 LGSCVI 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799000|ref|XP_002867384.1| EMB2757 [Arabidopsis lyrata subsp. lyrata] gi|297313220|gb|EFH43643.1| EMB2757 [Arabidopsis lyrata subsp. lyrata]

 Score =  359 bits (921), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 178/298 (59%), Positives = 226/298 (75%), Gaps = 12/298 (4%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRPPP DPVAVLRGHR SV DV FH +KP+LF G+  GELRIWDT+QHR VSS+W HS
Sbjct: 1   MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKPLLFTGSADGELRIWDTIQHRAVSSAWAHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
            A+G+++VA  P +G NK+ISQGRDGTVKCWDIE+GGLS +P L ++T++YHFCK SLVK
Sbjct: 60  RANGVLAVAASPWLGENKIISQGRDGTVKCWDIEDGGLSRDPLLILETSAYHFCKFSLVK 119

Query: 121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDSKDDVP----------AEGPKYMAVAGE 169
           +P  + ++A +  ++C E++ G+T       DS+  V           AEG  ++AV GE
Sbjct: 120 KPKTSLQEAVSHLQNCDEQDDGDTRSVQLGDDSERSVEDSGLLQDGDHAEGTTFVAVVGE 179

Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
           Q +EVEIWD+NT ++  +L Q+S   SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct: 180 QPTEVEIWDINTGDKIIQLPQSSLDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239

Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS 287
           DGS+L+WDIRN  IPLT++K H EPVL LSI  SC+GGISGGAD KIV+YNL+HS  S
Sbjct: 240 DGSMLLWDIRNAKIPLTSVKFHSEPVLSLSIASSCDGGISGGADDKIVMYNLNHSAGS 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449559|ref|XP_004142532.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Cucumis sativus] gi|449511779|ref|XP_004164051.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Cucumis sativus]

 Score =  359 bits (921), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 179/296 (60%), Positives = 224/296 (75%), Gaps = 13/296 (4%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRPPP DPVAVLRGHRASV DV FH ++P+LF+G+  GELRIWDT Q+RTVSS+WVHS
Sbjct: 1   MSKRPPP-DPVAVLRGHRASVMDVSFHPSEPLLFSGSADGELRIWDTAQNRTVSSAWVHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+SVA   SIG N+V+SQGRDGTVKCWDI++  LS  P+++IKTN+YHFCKLSLVK
Sbjct: 60  AAHGIISVACSRSIGTNRVVSQGRDGTVKCWDIDDRTLSRVPTVSIKTNAYHFCKLSLVK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV-----------PAEGPKYMAVAGE 169
           +P ++    N+  +C      + V+   L  S D               +G KY+AV+GE
Sbjct: 120 QP-SDFSSHNDGPNCINDRDEKPVEATILGCSGDKAQGISTEHSYRSEVDGLKYVAVSGE 178

Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
           Q SEVEIWDLN  ER  RL  NS G  PN S+K RG+CMAVQA+LPSKSQGF+NVL+GYE
Sbjct: 179 QSSEVEIWDLNAGERLLRLPPNSEGDCPNISTKDRGLCMAVQAFLPSKSQGFLNVLSGYE 238

Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285
           DGS+L WD+RNP +PL ++K H+EPVL + +D SC+G ISG AD+K+V+++LDHST
Sbjct: 239 DGSMLWWDLRNPRVPLASVKCHVEPVLSICVDGSCHGAISGAADEKVVMFSLDHST 294

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567255|ref|NP_194715.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|75674124|dbj|BAE44475.1| WD repeat protein [Arabidopsis thaliana] gi|332660286|gb|AEE85686.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  355 bits (912), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 180/302 (59%), Positives = 227/302 (75%), Gaps = 13/302 (4%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRPPP DPVAVLRGHR SV DV FH +K +LF G+  GELRIWDT+QHR VSS+W HS
Sbjct: 1   MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
            A+G+++VA  P +G +K+ISQGRDGTVKCWDIE+GGLS +P L ++T +YHFCK SLVK
Sbjct: 60  RANGVLAVAASPWLGEDKIISQGRDGTVKCWDIEDGGLSRDPLLILETCAYHFCKFSLVK 119

Query: 121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDS----------KDDVPAEGPKYMAVAGE 169
           +P  + ++A +  + C E++ G+T +     DS          +D   AEG  ++AV GE
Sbjct: 120 KPKNSLQEAESHSRGCDEQDGGDTCNVQIADDSERSEEDSGLLQDKDHAEGTTFVAVVGE 179

Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
           Q +EVEIWDLNT ++  +L Q+S   SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct: 180 QPTEVEIWDLNTGDKIIQLPQSSPDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239

Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289
           DGSIL+WDIRN  IPLT++K H EPVL LS+  SC+GGISGGAD KIV+YNL+HST S C
Sbjct: 240 DGSILLWDIRNAKIPLTSVKFHSEPVLSLSVASSCDGGISGGADDKIVMYNLNHSTGS-C 298

Query: 290 VI 291
            I
Sbjct: 299 TI 300

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323511860|gb|ADX87418.1| decreased size exclusion limit 1 [Nicotiana benthamiana]

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 185/296 (62%), Positives = 221/296 (74%), Gaps = 10/296 (3%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKRP P DPV+VLRGHRASV D+CFH +  ILF+G+T GELRIW+TVQ+RTVSS+WVHS
Sbjct: 1   MSKRPAP-DPVSVLRGHRASVADICFHPSNSILFSGSTDGELRIWNTVQYRTVSSAWVHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+ VA  P +G NKVISQGRDGTVKCWD   GGLS  P LTIKTNSYHFCKLS+ K
Sbjct: 60  AAHGIICVAASPVLGDNKVISQGRDGTVKCWDFGGGGLSRTPLLTIKTNSYHFCKLSIAK 119

Query: 121 EPYANAK----QANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176
            P    K    + NE  D  +RE      TDS+   K     EGPKY+A+AGEQ S VEI
Sbjct: 120 SPSEAMKIDDLEVNEIVDGMQREEQGDQPTDSI-KFKGKELIEGPKYVAIAGEQASVVEI 178

Query: 177 WDLNTAERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235
           WD+NTAER  +L  +S  GSP N +   RGMCMAVQA+LPS+SQG ++++AGYEDGSI  
Sbjct: 179 WDVNTAERIAQLPHSS--GSPSNQTPNQRGMCMAVQAFLPSESQGLLSIMAGYEDGSIAW 236

Query: 236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCVI 291
           WD+RN G+PLT++K H EPVL L ID SC GG+SG AD+KI+++ LDHS  S C+I
Sbjct: 237 WDLRNLGVPLTSVKFHSEPVLSLCIDGSCKGGLSGAADEKILMFALDHSMGS-CLI 291

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517988|ref|XP_003527666.1| PREDICTED: ASTRA-associated protein 1-like [Glycine max]

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 173/305 (56%), Positives = 227/305 (74%), Gaps = 16/305 (5%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MS+RPPP DPVAVLRGHRASVTD+ FH +KPILF+G+  GE+RIWDT+QHRTVSS+W+HS
Sbjct: 1   MSRRPPP-DPVAVLRGHRASVTDISFHPSKPILFSGSADGEVRIWDTLQHRTVSSAWLHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGIV+VA   S+G NK +SQGRDGTVK W++ + GLS  P LTIKTN+YHFCK S+VK
Sbjct: 60  AAHGIVAVAGSSSLGNNKFVSQGRDGTVKVWELGDAGLSRIPVLTIKTNTYHFCKFSMVK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA--------------EGPKYMAV 166
           +    +K+    +D Y  E+G   D + L D +++                 EG +Y+A+
Sbjct: 120 KHSVWSKEGKASEDSYRSELGGVPDREILEDRREEAYTNQSCSESFGENMYNEGLQYVAL 179

Query: 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226
           +GE+ SEVEIWDL +AE+  +L  ++   S +  +KGRGMCMA+Q +LPS+SQGF+NVLA
Sbjct: 180 SGEKSSEVEIWDLKSAEKVVQLPSSNPSNSSSPCNKGRGMCMALQLFLPSESQGFLNVLA 239

Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286
           GYEDGS+L WD+RNPG+P+T++K H EPVL +  D SC GGISG AD KIV+Y+LDHS+ 
Sbjct: 240 GYEDGSMLWWDVRNPGVPVTSVKFHSEPVLSVCNDGSCKGGISGAADDKIVMYSLDHSSG 299

Query: 287 SHCVI 291
           + CV+
Sbjct: 300 T-CVV 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466905|ref|XP_003603737.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula] gi|355492785|gb|AES73988.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula]

 Score =  340 bits (871), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 168/291 (57%), Positives = 216/291 (74%), Gaps = 10/291 (3%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKR  P DPVAVLRGHRASVTD+CFH +KPILF+G+  GELRIWDT + +T+SS+W+HS
Sbjct: 1   MSKRAAP-DPVAVLRGHRASVTDICFHPSKPILFSGSADGELRIWDTFRRQTLSSAWLHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+++A+  S+G NK +SQGRDGTVK WD ++ GLS  PS+TIKTNSYHFCK SL K
Sbjct: 60  AAHGILALASSSSLGTNKFVSQGRDGTVKVWDFDDTGLSRIPSVTIKTNSYHFCKFSLAK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180
                +K     KDC E    E V T+  C       +EG  Y+A++GE  SEVEIWDL 
Sbjct: 120 NQSTGSKAGEASKDCLET---EEVHTNQSCSES----SEGLSYVALSGENSSEVEIWDLK 172

Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
           +AER  RL  +    S + SSK  GMCMA+Q  +PS+SQGF+NV+AGYEDG++L WD+RN
Sbjct: 173 SAERFARLPSSIGSNSSSVSSK--GMCMALQLCVPSESQGFLNVMAGYEDGTMLWWDVRN 230

Query: 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCVI 291
           PG+P++++K H EPVL + ID SC GGISG AD++IV+Y+LDHS+V+  + 
Sbjct: 231 PGVPVSSVKFHSEPVLSIGIDGSCKGGISGAADERIVMYSLDHSSVTSFIF 281

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466903|ref|XP_003603736.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula] gi|355492784|gb|AES73987.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 169/291 (58%), Positives = 217/291 (74%), Gaps = 11/291 (3%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
           MSKR  P DPVAVLRGHRASVTD+CFH +KPILF+G+  GELRIWDT + +T+SS+W+HS
Sbjct: 1   MSKRAAP-DPVAVLRGHRASVTDICFHPSKPILFSGSADGELRIWDTFRRQTLSSAWLHS 59

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
           AAHGI+++A+  S+G NK +SQGRDGTVK WD ++ GLS  PS+TIKTNSYHFCK SL K
Sbjct: 60  AAHGILALASSSSLGTNKFVSQGRDGTVKVWDFDDTGLSRIPSVTIKTNSYHFCKFSLAK 119

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180
                +K     KDC E    E V T+  C       +EG  Y+A++GE  SEVEIWDL 
Sbjct: 120 NQSTGSKAGEASKDCLET---EEVHTNQSCSES----SEGLSYVALSGENSSEVEIWDLK 172

Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
           +AER  RL  +    S + SSK  GMCMA+Q  +PS+SQGF+NV+AGYEDG++L WD+RN
Sbjct: 173 SAERFARLPSSIGSNSSSVSSK--GMCMALQLCVPSESQGFLNVMAGYEDGTMLWWDVRN 230

Query: 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCVI 291
           PG+P++++K H EPVL + ID SC GGISG AD++IV+Y+LDHS+ + CV+
Sbjct: 231 PGVPVSSVKFHSEPVLSIGIDGSCKGGISGAADERIVMYSLDHSSGT-CVV 280

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2123869	386	EMB2757 "AT4G29860" [Arabidops	0.993	0.748	0.596	1.3e-91
DICTYBASE|DDB_G0289181	359	gnb1l "guanine nucleotide-bind	0.374	0.303	0.314	1.9e-23
ZFIN|ZDB-GENE-050320-77	323	gnb1l "guanine nucleotide bind	0.501	0.452	0.300	9.9e-19
MGI|MGI:1338057	326	Gnb1l "guanine nucleotide bind	0.676	0.604	0.273	3.5e-12
RGD|1594165	326	Gnb1l "guanine nucleotide bind	0.676	0.604	0.264	1.7e-11
UNIPROTKB|F1NF00	328	GNB1L "Uncharacterized protein	0.670	0.594	0.286	2.3e-11
UNIPROTKB|Q9BYB4	327	GNB1L "Guanine nucleotide-bind	0.676	0.602	0.269	1e-08
SGD|S000004951	303	LST8 "Protein required for the	0.470	0.452	0.287	2.8e-07
UNIPROTKB|F1MBU4	321	GNB1L "Uncharacterized protein	0.457	0.414	0.303	4.3e-07
UNIPROTKB|F1RK57	293	GNB1L "Uncharacterized protein	0.412	0.409	0.290	4.9e-06

TAIR|locus:2123869 EMB2757 "AT4G29860" [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 180/302 (59%), Positives = 227/302 (75%)

Query:     1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
             MSKRPPP DPVAVLRGHR SV DV FH +K +LF G+  GELRIWDT+QHR VSS+W HS
Sbjct:     1 MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHS 59

Query:    61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
              A+G+++VA  P +G +K+ISQGRDGTVKCWDIE+GGLS +P L ++T +YHFCK SLVK
Sbjct:    60 RANGVLAVAASPWLGEDKIISQGRDGTVKCWDIEDGGLSRDPLLILETCAYHFCKFSLVK 119

Query:   121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----------DDVPAEGPKYMAVAGE 169
             +P  + ++A +  + C E++ G+T +     DS+          D   AEG  ++AV GE
Sbjct:   120 KPKNSLQEAESHSRGCDEQDGGDTCNVQIADDSERSEEDSGLLQDKDHAEGTTFVAVVGE 179

Query:   170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
             Q +EVEIWDLNT ++  +L Q+S   SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct:   180 QPTEVEIWDLNTGDKIIQLPQSSPDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239

Query:   230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289
             DGSIL+WDIRN  IPLT++K H EPVL LS+  SC+GGISGGAD KIV+YNL+HST S C
Sbjct:   240 DGSILLWDIRNAKIPLTSVKFHSEPVLSLSVASSCDGGISGGADDKIVMYNLNHSTGS-C 298

Query:   290 VI 291
              I
Sbjct:   299 TI 300

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009790 "embryo development" evidence=IMP

GO:0048700 "acquisition of desiccation tolerance in seed" evidence=IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

DICTYBASE|DDB_G0289181 gnb1l "guanine nucleotide-binding protein subunit beta-like protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 177 (67.4 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
 Identities = 38/121 (31%), Positives = 66/121 (54%)

Query:   172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-------SQGFVNV 224
             S+VEIWDL   +   +L  N+         K  G+ M+++ Y  ++       S   + +
Sbjct:   156 SQVEIWDLKNKQVINKLKPNN----QQLFEK-LGLPMSLKLYYENENNDNSNQSNDQIRL 210

Query:   225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284
               GYE+G +L+WD+RN  IPL + K+H EP+L  ++  +   GISG  D  I+ +N+++ 
Sbjct:   211 CTGYENGELLIWDLRNTSIPLVSSKLHNEPILSFALSNNSTKGISGSGDTNIIEFNINYE 270

Query:   285 T 285
             +
Sbjct:   271 S 271

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-050320-77 gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 9.9e-19, Sum P(2) = 9.9e-19
 Identities = 46/153 (30%), Positives = 71/153 (46%)

Query:     6 PPPDPVAVLRGHRASVTDV---CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA 62
             PPPDP+ +LRG  ASV  +   C     P+L++G+  G + +W+    R       H A 
Sbjct:     4 PPPDPLYILRGSGASVNALHFCCDGDGPPLLYSGSGKGAVHVWNLSTRRAERVLESH-AG 62

Query:    63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP 122
             + ++ + T  +   + +ISQGRD  V  WD+  G  +   SL   T S  FC+ SL+   
Sbjct:    63 NSVIWLNTFNN-SRSCLISQGRDMRVCVWDLSEGRSAVTDSL--HTGSVGFCQCSLLGSR 119

Query:   123 YANAKQANEPKDCYEREVGETVDTDSLCDSKDD 155
               +   A+  +   E  V E      +C  K D
Sbjct:   120 LGSTLLAHPTQHMEEVSVVEMSSWTQVCSLKPD 152

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1338057 Gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
 Identities = 61/223 (27%), Positives = 105/223 (47%)

Query:     5 PPPPDPVAVLRGHRASVTDVCF---HQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
             PPPP P  VLRG +++V  + F    Q    P+LF+G+  G + IW     R V++   H
Sbjct:     6 PPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIWSLQTRRIVTTLNGH 65

Query:    60 SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
                 G++ + T P  G ++++SQGRD  +  WD+E G  +   S  ++ +S  FC+ S++
Sbjct:    66 GG-QGVIWLKTLPQ-G-HQLLSQGRDLRLCLWDLEEGRNTIMDS--VQLDSVGFCRGSIL 120

Query:   120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE-G-P------------KYMA 165
                      A   K   E ++ E     S+C  K +  A  G P            + + 
Sbjct:   121 VRGQQCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADARPGMPMCLGLWQTNSSLRPLL 180

Query:   166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGM 206
             +AG +   V +WD++  + C+++  H+    G    S K +G+
Sbjct:   181 LAGYEDGSVTLWDISERKVCSQITCHEEPVMGLDFDSQKAKGI 223

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0035176 "social behavior" evidence=IMP

RGD|1594165 Gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 162 (62.1 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
 Identities = 59/223 (26%), Positives = 101/223 (45%)

Query:     5 PPPPDPVAVLRGHRASVTDVCFHQT-----KPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
             PPPP P  VLRG +++V  + F         P+LF+G+  G + IW     R V++   H
Sbjct:     6 PPPPSPRFVLRGTQSAVNTLHFCPAPGAAENPLLFSGSQNGLVHIWSLQTRRIVATLNGH 65

Query:    60 SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
                 G+  + T P  G  +++SQGRD  +  WD+  G  +   S  ++ +S  FCK S++
Sbjct:    66 GG-QGVTWLKTLPQ-G-QQLLSQGRDPRLCLWDLAEGRNTVMDS--VQLDSVGFCKSSIL 120

Query:   120 KEPYANAKQANEPKDCYEREVGETVDTDSLC------DSKDDVPA--------EGPKYMA 165
                      A   K   E ++ E     S+C      D+K  +P            + + 
Sbjct:   121 VRGQLCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADAKPGMPMCLGLWQTNSSLRPLL 180

Query:   166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGM 206
             +AG +   V +WD++  + C+++  H+    G    S K +G+
Sbjct:   181 LAGYEDGSVTLWDVSERKVCSQITCHEEPVMGLDFDSQKAKGV 223

GO:0005737 "cytoplasm" evidence=ISO

GO:0035176 "social behavior" evidence=ISO

UNIPROTKB|F1NF00 GNB1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 176 (67.0 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 64/223 (28%), Positives = 100/223 (44%)

Query:     6 PPPDPVAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
             PPPDP  VLRG  A+V  + F         P+LF+G+  G + +W+   HR  ++     
Sbjct:     4 PPPDPHFVLRGTGAAVHALHFSCGGGEPDIPVLFSGSENGFIHVWNLKTHRVDAAL---- 59

Query:    61 AAHGIVSVATGPSI-GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
               HG  SV    ++ G  +++SQGRD  +  WD+  G  S   S  + T +  FC+ SL+
Sbjct:    60 DGHGRKSVCGLKTMDGKERLLSQGRDQRICLWDLAEGRTSVTDS--VFTENVGFCRCSLL 117

Query:   120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE--------------GPKYMA 165
             K        A   K   E +V E     S+C  K +V A+              G +   
Sbjct:   118 KVAEGRWLMATAAKALEEVQVLELPSKTSVCTLKPEVGAKLGMPMCLKLWQGSCGSQPSL 177

Query:   166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGM 206
             +AG +   V +W+L+T +  ++L  HQ         S K +G+
Sbjct:   178 LAGYEDGSVLLWNLSTGKVLSQLICHQEPVMSLDFDSEKAKGI 220

GO:0005737 "cytoplasm" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

UNIPROTKB|Q9BYB4 GNB1L "Guanine nucleotide-binding protein subunit beta-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 60/223 (26%), Positives = 103/223 (46%)

Query:     5 PPPPDPVAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
             PPPPDP  VLRG ++ V  + F      Q +P+LF+G+  G + IW     R V++   H
Sbjct:     7 PPPPDPQFVLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGH 66

Query:    60 SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
                  +  + T P  G  +++SQGRD  +  WD+  G  +   S+ ++  S  FC+ S++
Sbjct:    67 GG-QCVTWLQTLPQ-G-RQLLSQGRDLKLCLWDLAEGRSAVVDSVCLE--SVGFCRSSIL 121

Query:   120 KEPYANAKQANEPKDCYEREVGETVDTDSLC------DSKDDVP-------AE-GPKYMA 165
                      A   +   E ++ E     S+C      D+K  +P       A+   + + 
Sbjct:   122 AGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALKPKADAKLGMPMCLRLWQADCSSRPLL 181

Query:   166 VAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGM 206
             +AG +   V +WD++  + C+R+  H+         S K RG+
Sbjct:   182 LAGYEDGSVVLWDVSEQKVCSRIACHEEPVMDLDFDSQKARGI 224

GO:0005737 "cytoplasm" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=NAS

GO:0035556 "intracellular signal transduction" evidence=NAS

GO:0009898 "internal side of plasma membrane" evidence=NAS

SGD|S000004951 LST8 "Protein required for the transport of Gap1p to the cell surface" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 141 (54.7 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 42/146 (28%), Positives = 69/146 (47%)

Query:     4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
             R   P+PVA   GHR +VT V F Q    +   +  G +++WD V+  ++  ++ H+A  
Sbjct:    61 RTTNPNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDGTIKVWD-VRSPSIPRNYKHNAP- 118

Query:    64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123
              +  V   P+ G  ++IS  RDG ++ WD+  G       LT + ++     LS+  +  
Sbjct:   119 -VNEVVIHPNQG--ELISCDRDGNIRIWDL--GENQCTHQLTPEDDT-SLQSLSMASDGS 172

Query:   124 ANAKQANEPKDCYEREVGETVDTDSL 149
               A  AN   +CY  E+    D   L
Sbjct:   173 MLAA-ANTKGNCYVWEMPNHTDASHL 197

GO:0030950 "establishment or maintenance of actin cytoskeleton polarity" evidence=IMP

GO:0030295 "protein kinase activator activity" evidence=IMP

GO:0005886 "plasma membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IDA

GO:0001558 "regulation of cell growth" evidence=IPI

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IMP

GO:0010008 "endosome membrane" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0031505 "fungal-type cell wall organization" evidence=IMP

GO:0031929 "TOR signaling cascade" evidence=IC;IMP

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IMP

GO:0031932 "TORC2 complex" evidence=IPI

GO:0031931 "TORC1 complex" evidence=IPI

GO:0006810 "transport" evidence=IMP

UNIPROTKB|F1MBU4 GNB1L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 44/145 (30%), Positives = 78/145 (53%)

Query:   140 VGETVDTDSLCDSKDDVPAEGPK--YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP 197
             V + V  +S+   +  V AEGP+   +AV G    EV++ +L +    T +   SC   P
Sbjct:    98 VVDAVHLESVGFCRASVLAEGPQRWMLAVPGRGSDEVQVLELPSK---TSV---SCL-KP 150

Query:   198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257
                ++  GM M +Q +    S   + +LAGYEDGS+ +WD+    +  + +  H EPV+ 
Sbjct:   151 EAGAR-LGMPMCLQLWQAESSPRPL-LLAGYEDGSLALWDVSARKV-CSRVACHSEPVMA 207

Query:   258 LSIDESCNGGISGGADQKIVLYNLD 282
             L++D     G+SG A++ + +++L+
Sbjct:   208 LALDPRRARGVSGSAEKVLAVWSLE 232

GO:0035176 "social behavior" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1RK57 GNB1L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 130 (50.8 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 38/131 (29%), Positives = 66/131 (50%)

Query:   159 EGPKYMAVAGEQLSEVEIWDL----NTAERCTRLHQ-NSCGGSPNFSSKGRGMCMAVQAY 213
             +GP+ ++  G  L ++ +WDL    NT      L     C GS     + R M +AV   
Sbjct:    78 QGPQLLS-QGRDL-KLCLWDLAEGRNTVVDSVHLESVGFCRGSILAGGQPRWM-LAVPGS 134

Query:   214 LPSKSQGFVN--VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271
                ++       +LAGYEDGS+ +WD+    +  + +  H EPV+ L +D     G+SG 
Sbjct:   135 GSDEANSSPRPLLLAGYEDGSVALWDVSEQKV-CSRIACHTEPVMGLDVDSQKARGVSGS 193

Query:   272 ADQKIVLYNLD 282
             A++ + ++++D
Sbjct:   194 AEKALAVWSVD 204

GO:0035176 "social behavior" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 68.6 bits (166), Expect = 4e-13
 Identities = 58/282 (20%), Positives = 107/282 (37%), Gaps = 29/282 (10%)

Query: 14  LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG-P 72
           LRGH  S+T + F     +L +G++ G +++WD      +  S        +  +A   P
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 73  SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
                 + S   DGTVK WD+   G       T++ +S     L+   +    A  ++  
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGKLLASGSSLD 177

Query: 133 KDCYEREVGETVDTDSLCDSKDDV-----PAEGPKYMAVAGEQLSEVEIWDLNTAERC-T 186
                 ++       +L    D V       +G   +A      + + +WDL+T +   +
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT-IRLWDLSTGKLLRS 236

Query: 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246
            L  +S     +FS  G                    + +G  DG+I +WD+R+    L 
Sbjct: 237 TLSGHSDSVVSSFSPDGS------------------LLASGSSDGTIRLWDLRSSSSLLR 278

Query: 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH 288
            +  H   VL ++         SG +D  + L++L+   +  
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
              L+GH   VT V F     +L  G+  G +++WD      + +   H+    +  VA
Sbjct: 1  LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT--GPVRDVA 58

Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENG 96
                   + S   D T++ WD+E G
Sbjct: 59 ASAD--GTYLASGSSDKTIRLWDLETG 83

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 59.7 bits (143), Expect = 5e-10
 Identities = 57/282 (20%), Positives = 107/282 (37%), Gaps = 32/282 (11%)

Query: 7   PPDPVAVLRGHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
              P++ L GH   V+ + F     +L A  ++ G +R+WD     T        + H  
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL---STGKLLRSTLSGHSD 243

Query: 66  VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125
             V++    G + + S   DGT++ WD+ +    S+   T+  +S     ++   +    
Sbjct: 244 SVVSSFSPDG-SLLASGSSDGTIRLWDLRSS---SSLLRTLSGHSSSVLSVAFSPDGKLL 299

Query: 126 AKQANEPKDC-YEREVGETVDTDSLCDSKDDVPA----EGPKYMAVAGEQLSEVEIWDLN 180
           A  +++     ++ E G+ + + +L   +  V +         +   G     + +WDL 
Sbjct: 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359

Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
           T +        +  G  N  S              S S     V +G  DG++ +WD+ +
Sbjct: 360 TGK-----PLKTLEGHSNVLSV-------------SFSPDGRVVSSGSTDGTVRLWDL-S 400

Query: 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
            G  L  +  H   V  L          SG +D  I L++L 
Sbjct: 401 TGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 59/275 (21%), Positives = 103/275 (37%), Gaps = 70/275 (25%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
            + V  L GH + V+ V F     IL + +    +++WD    + +++  +      + S
Sbjct: 83  GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT--LRGHTDWVNS 140

Query: 68  VATGPSIGLNKVISQG-RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA 126
           VA  P       ++   +DGT+K WD+  G         + T + H              
Sbjct: 141 VAFSPD---GTFVASSSQDGTIKLWDLRTGKC-------VATLTGH-------------- 176

Query: 127 KQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT 186
                       EV      +S+  S D     G K ++ + +    +++WDL+T +   
Sbjct: 177 ----------TGEV------NSVAFSPD-----GEKLLSSSSD--GTIKLWDLSTGK--- 210

Query: 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIPL 245
                +  G  N          +V A+ P        +LA   EDG+I VWD+R  G  +
Sbjct: 211 --CLGTLRGHENG-------VNSV-AFSPDG-----YLLASGSEDGTIRVWDLRT-GECV 254

Query: 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
             +  H   V  L+         SG AD  I +++
Sbjct: 255 QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 50/239 (20%), Positives = 76/239 (31%), Gaps = 79/239 (33%)

Query: 6   PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHS 60
                +  LRGH   V  V F      + + +  G +++WD    + V      +  V+S
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
            A          S    K++S   DGT+K WD+  G         + T   H        
Sbjct: 183 VA---------FSPDGEKLLSSSSDGTIKLWDLSTGKC-------LGTLRGH-------- 218

Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180
           E   N                      S+  S D         +A   E  + + +WDL 
Sbjct: 219 ENGVN----------------------SVAFSPDG------YLLASGSEDGT-IRVWDLR 249

Query: 181 TAERCTRL--HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237
           T E    L  H NS               +A     P   +    + +G  DG+I +WD
Sbjct: 250 TGECVQTLSGHTNSVT------------SLAWS---PDGKR----LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 57/287 (19%), Positives = 99/287 (34%), Gaps = 39/287 (13%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
            +  L GH  SVT + F     +L +G++  G +++WD    + +S+   H+     VS 
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT---DPVSS 203

Query: 69  ATGPSIGLNKVISQGRDGTVKCWDIENGG-----LSSNPSLTIKTNSYHFCKLSLVKEPY 123
                 G   + S   DGT++ WD+  G      LS +    + + S     L+      
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG 263

Query: 124 A----NAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179
                + + ++             +      D          K +A      + V +WDL
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG---------KLLASGSSDGT-VRLWDL 313

Query: 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239
            T             G    S   +G    V +   S     + V  G +DG+I +WD+R
Sbjct: 314 ET-------------GKLLSSLTLKGHEGPVSSLSFSPDGSLL-VSGGSDDGTIRLWDLR 359

Query: 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286
                 T         +  S D       SG  D  + L++L   ++
Sbjct: 360 TGKPLKTLEGHSNVLSVSFSPDGRVVS--SGSTDGTVRLWDLSTGSL 404

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.1 bits (118), Expect = 7e-07
 Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 23/229 (10%)

Query: 13  VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATG 71
            L GH  SV    F     +L +G++ G +R+WD     + + +   HS    ++SVA  
Sbjct: 237 TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS--SSVLSVAFS 293

Query: 72  PSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131
           P      + S   DGTV+ WD+E G L S+ +L            S       +    + 
Sbjct: 294 PD--GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351

Query: 132 PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN 191
               ++   G+ + T     +   V       +  +G     V +WDL+T      L   
Sbjct: 352 TIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL--- 408

Query: 192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
                              +      S    ++ +G  D +I +WD++ 
Sbjct: 409 --------------DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
           +  L+GH   VT V F      L +G+  G +++WD
Sbjct: 4  LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
           +  L+GH   VT V F     +L +G+  G +R+WD
Sbjct: 3  LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.87
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.87
KOG0296	399	consensus Angio-associated migratory cell protein	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.87
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.86
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.85
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.85
KOG1539	910	consensus WD repeat protein [General function pred	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG1188	376	consensus WD40 repeat protein [General function pr	99.82
KOG2096	420	consensus WD40 repeat protein [General function pr	99.82
KOG1310	758	consensus WD40 repeat protein [General function pr	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.8
KOG4227	609	consensus WD40 repeat protein [General function pr	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG2055	514	consensus WD40 repeat protein [General function pr	99.77
KOG1334	559	consensus WD40 repeat protein [General function pr	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG2048	691	consensus WD40 repeat protein [General function pr	99.77
KOG4328	498	consensus WD40 protein [Function unknown]	99.77
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.76
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.76
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.76
KOG0649	325	consensus WD40 repeat protein [General function pr	99.75
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.74
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.74
COG2319	466	FOG: WD40 repeat [General function prediction only	99.73
PRK01742	429	tolB translocation protein TolB; Provisional	99.72
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.72
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.71
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.71
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.7
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.7
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.68
KOG1963	792	consensus WD40 repeat protein [General function pr	99.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.67
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.66
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.66
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.66
PRK11028	330	6-phosphogluconolactonase; Provisional	99.66
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.64
PRK05137	435	tolB translocation protein TolB; Provisional	99.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.61
KOG1963	792	consensus WD40 repeat protein [General function pr	99.61
PRK04922	433	tolB translocation protein TolB; Provisional	99.61
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.6
KOG2139	445	consensus WD40 repeat protein [General function pr	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.6
PRK01742	429	tolB translocation protein TolB; Provisional	99.58
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.58
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.57
KOG2321	703	consensus WD40 repeat protein [General function pr	99.54
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.54
KOG2139	445	consensus WD40 repeat protein [General function pr	99.54
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.51
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.49
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.48
KOG1310	758	consensus WD40 repeat protein [General function pr	99.47
PRK02889	427	tolB translocation protein TolB; Provisional	99.46
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.46
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.45
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.44
PRK04922	433	tolB translocation protein TolB; Provisional	99.44
PRK03629	429	tolB translocation protein TolB; Provisional	99.43
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.42
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.42
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.42
PRK05137	435	tolB translocation protein TolB; Provisional	99.42
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.41
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.4
PRK04792	448	tolB translocation protein TolB; Provisional	99.4
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.38
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.37
KOG2321	703	consensus WD40 repeat protein [General function pr	99.35
PRK01029	428	tolB translocation protein TolB; Provisional	99.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.35
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.34
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.33
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.33
KOG2315	566	consensus Predicted translation initiation factor	99.32
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.31
KOG4547	541	consensus WD40 repeat-containing protein [General	99.29
KOG1334	559	consensus WD40 repeat protein [General function pr	99.28
KOG2315	566	consensus Predicted translation initiation factor	99.26
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.25
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.24
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.23
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.23
PRK04792	448	tolB translocation protein TolB; Provisional	99.22
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.22
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.21
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.19
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.19
PRK00178	430	tolB translocation protein TolB; Provisional	99.18
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.17
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.13
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.13
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.12
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.11
KOG2314	698	consensus Translation initiation factor 3, subunit	99.11
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.1
PRK01029	428	tolB translocation protein TolB; Provisional	99.09
PRK04043	419	tolB translocation protein TolB; Provisional	99.09
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.09
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.04
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.03
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.03
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.03
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.02
KOG4547	541	consensus WD40 repeat-containing protein [General	99.01
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.01
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.01
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.99
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.97
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.97
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.96
COG4946	668	Uncharacterized protein related to the periplasmic	98.96
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.95
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.95
KOG2695	425	consensus WD40 repeat protein [General function pr	98.94
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.93
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.92
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.88
COG4946	668	Uncharacterized protein related to the periplasmic	98.87
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.86
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.85
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.84
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.82
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.8
KOG2695	425	consensus WD40 repeat protein [General function pr	98.77
KOG2314	698	consensus Translation initiation factor 3, subunit	98.76
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.73
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.7
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.69
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.68
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.68
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.68
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.65
PRK04043	419	tolB translocation protein TolB; Provisional	98.63
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.55
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.54
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.54
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.53
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.52
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.49
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.44
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.41
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.4
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.4
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.39
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.38
PRK02888	635	nitrous-oxide reductase; Validated	98.38
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.35
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.34
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.25
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.24
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.22
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.18
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.17
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.16
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.14
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.12
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.12
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.06
KOG2444	238	consensus WD40 repeat protein [General function pr	98.05
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.04
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.0
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.99
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.91
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.87
COG3391	381	Uncharacterized conserved protein [Function unknow	97.87
PRK02888	635	nitrous-oxide reductase; Validated	97.86
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.86
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.85
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.84
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.8
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.79
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.75
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.71
KOG3621	726	consensus WD40 repeat-containing protein [General	97.69
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.68
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.66
KOG3621	726	consensus WD40 repeat-containing protein [General	97.63
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.61
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.57
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.52
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.51
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.44
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.44
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.43
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.31
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.29
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.29
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.26
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.24
KOG2395	644	consensus Protein involved in vacuole import and d	97.24
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.2
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.13
PHA02713	557	hypothetical protein; Provisional	97.13
COG3391	381	Uncharacterized conserved protein [Function unknow	97.08
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.94
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.91
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.81
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.74
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.65
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.6
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.41
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.35
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.35
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.34
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.31
PHA03098	534	kelch-like protein; Provisional	96.31
PRK13616	591	lipoprotein LpqB; Provisional	96.29
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.24
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.21
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.14
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.06
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.04
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.01
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.95
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.94
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.86
KOG2444	238	consensus WD40 repeat protein [General function pr	95.79
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.65
PRK13616	591	lipoprotein LpqB; Provisional	95.58
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.57
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.54
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.51
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.45
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.41
PHA02713	557	hypothetical protein; Provisional	95.32
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.32
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.31
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.23
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.95
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.9
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.78
KOG2395	644	consensus Protein involved in vacuole import and d	94.78
PHA02790	480	Kelch-like protein; Provisional	94.72
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.37
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.29
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.29
PRK10115	686	protease 2; Provisional	94.22
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.16
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.15
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.14
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.02
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.99
COG4880	603	Secreted protein containing C-terminal beta-propel	93.88
KOG2247	615	consensus WD40 repeat-containing protein [General	93.7
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	93.38
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.73
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.7
COG5167	776	VID27 Protein involved in vacuole import and degra	92.66
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.54
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.31
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.13
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.48
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.25
COG4590	733	ABC-type uncharacterized transport system, permeas	91.19
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.92
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	90.85
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.68
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.55
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.18
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	89.98
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.4
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.79
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.6
PHA03098	534	kelch-like protein; Provisional	88.45
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.44
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	87.78
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.38
KOG3611	737	consensus Semaphorins [Signal transduction mechani	87.33
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	86.95
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.88
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.81
KOG2247	615	consensus WD40 repeat-containing protein [General	86.06
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	86.04
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.03
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	85.76
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.65
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.59
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	85.27
COG4590	733	ABC-type uncharacterized transport system, permeas	84.82
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	84.8
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	84.67
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	84.47
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	83.99
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	83.8
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	83.58
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	83.06
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	82.89
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	82.75
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	82.47
COG5276	370	Uncharacterized conserved protein [Function unknow	82.1
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	82.07
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	81.99
PHA02790	480	Kelch-like protein; Provisional	81.71
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	81.64
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	80.64

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.2e-42  Score=255.46  Aligned_cols=268  Identities=18%  Similarity=0.299  Sum_probs=204.3

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .++-..+.||.++|.|++|+|+|..|++|+.|.++|+||+.+..+..+.++|.+-  |.|++|+|  ||..|++|+.||+
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~W--VlcvawsP--Dgk~iASG~~dg~  180 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNW--VLCVAWSP--DGKKIASGSKDGS  180 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccE--EEEEEECC--CcchhhccccCCe
Confidence            3667789999999999999999999999999999999999999999999999955  99999999  9999999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEE--EEEeeccc----CccceeccCCCCceeeecccCccccccCCCCCC--cccCCC
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYH--FCKLSLVK----EPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAE  159 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  159 (291)
                      |++||.++++....   .+..+...  ...+.+..    ..........+...+|++...... ..+.+|..  .+.-..
T Consensus       181 I~lwdpktg~~~g~---~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~-~~lsgHT~~VTCvrwG  256 (480)
T KOG0271|consen  181 IRLWDPKTGQQIGR---ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV-RTLSGHTASVTCVRWG  256 (480)
T ss_pred             EEEecCCCCCcccc---cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE-EEeccCccceEEEEEc
Confidence            99999999886543   23333322  22222221    112233445567777887665443 35667766  444445


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCcceeeEecccccC--------------CCCCC--------------------------
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG--------------GSPNF--------------------------  199 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~--------------~~~~~--------------------------  199 (291)
                      |+.++. +|+.|++|++|+...+.+...++....-              ....|                          
T Consensus       257 G~gliy-SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~  335 (480)
T KOG0271|consen  257 GEGLIY-SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS  335 (480)
T ss_pred             CCceEE-ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence            555655 8999999999998876655444311000              00000                          


Q ss_pred             ---------------------------CCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc
Q 022870          200 ---------------------------SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (291)
Q Consensus       200 ---------------------------~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~  252 (291)
                                                 ...+...+..+. |+|+   ++ ++++++-|..|++||.++ ++.+.+|++|-
T Consensus       336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~-fSPd---~r-~IASaSFDkSVkLW~g~t-Gk~lasfRGHv  409 (480)
T KOG0271|consen  336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS-FSPD---GR-YIASASFDKSVKLWDGRT-GKFLASFRGHV  409 (480)
T ss_pred             cceeEEecCCceEEEecccccccchhhhhchhhheeeEE-ECCC---cc-EEEEeecccceeeeeCCC-cchhhhhhhcc
Confidence                                       001123456676 9998   55 999999999999999999 99999999999


Q ss_pred             cceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       253 ~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +.|+.++|+.|.++|++||.|.++++|++++.++.+-+
T Consensus       410 ~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL  447 (480)
T KOG0271|consen  410 AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL  447 (480)
T ss_pred             ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence            99999999999999999999999999999999887543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7.5e-41  Score=251.45  Aligned_cols=245  Identities=18%  Similarity=0.284  Sum_probs=205.4

Q ss_pred             CceEEecCCccceeEEEEcCC--CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            9 DPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      ..+.+|.||++.|.++.|+|.  +..+|||+.||++++|++++..++..+.+|...  |..++|+|  +|++|+|++.|.
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~R--Vs~VafHP--sG~~L~TasfD~  283 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLAR--VSRVAFHP--SGKFLGTASFDS  283 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhh--heeeeecC--CCceeeeccccc
Confidence            678999999999999999995  678999999999999999998999999999955  99999999  999999999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCc
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  162 (291)
                      +=++||++++....  ....+......+.+.+.++-. ..........+|+++.++.+.. +.+|.+    ++|+|+|-.
T Consensus       284 tWRlWD~~tk~ElL--~QEGHs~~v~~iaf~~DGSL~-~tGGlD~~~RvWDlRtgr~im~-L~gH~k~I~~V~fsPNGy~  359 (459)
T KOG0272|consen  284 TWRLWDLETKSELL--LQEGHSKGVFSIAFQPDGSLA-ATGGLDSLGRVWDLRTGRCIMF-LAGHIKEILSVAFSPNGYH  359 (459)
T ss_pred             chhhcccccchhhH--hhcccccccceeEecCCCcee-eccCccchhheeecccCcEEEE-ecccccceeeEeECCCceE
Confidence            99999999987543  334455555555554443221 1222334567899998887654 555777    999999944


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                       +| +|+.|++++|||++..+.+.+++        +|    ...+..+. |+|.  .|+ +|++++.|++++||..++ .
T Consensus       360 -lA-Tgs~Dnt~kVWDLR~r~~ly~ip--------AH----~nlVS~Vk-~~p~--~g~-fL~TasyD~t~kiWs~~~-~  420 (459)
T KOG0272|consen  360 -LA-TGSSDNTCKVWDLRMRSELYTIP--------AH----SNLVSQVK-YSPQ--EGY-FLVTASYDNTVKIWSTRT-W  420 (459)
T ss_pred             -Ee-ecCCCCcEEEeeecccccceecc--------cc----cchhhheE-eccc--CCe-EEEEcccCcceeeecCCC-c
Confidence             44 78889999999999999988888        77    44677776 9995  266 999999999999999998 9


Q ss_pred             CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      .+++++.||++.|.++..++++.+++|++.|.++++|.
T Consensus       421 ~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  421 SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.8e-39  Score=244.09  Aligned_cols=250  Identities=17%  Similarity=0.225  Sum_probs=200.6

Q ss_pred             cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        15 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~   94 (291)
                      -|-+.+|..+.|++++..|+||+.+|.++||+..+.+.+.++.+|...  |.++.|+|..++..++||+.||++++|++.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~--v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR--VGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccc--eeeEEEccCCCccceeeeccCCceeeeccC
Confidence            356789999999999999999999999999999999999999999966  999999995335699999999999999999


Q ss_pred             CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCC
Q 022870           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQ  170 (291)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~  170 (291)
                      +...+.  .++.+........|.+.+.....+.. ...-..|++..... .....+|..    ++|+|||.  ++++|+.
T Consensus       250 ~e~~l~--~l~gH~~RVs~VafHPsG~~L~Tasf-D~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGS--L~~tGGl  323 (459)
T KOG0272|consen  250 QETPLQ--DLEGHLARVSRVAFHPSGKFLGTASF-DSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGS--LAATGGL  323 (459)
T ss_pred             CCcchh--hhhcchhhheeeeecCCCceeeeccc-ccchhhcccccchh-hHhhcccccccceeEecCCCc--eeeccCc
Confidence            875443  22223333444444444333322222 12223344444332 234567766    99999996  3448889


Q ss_pred             cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc
Q 022870          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (291)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (291)
                      |..-+|||++++.++..+.        +|..    .++++. |+|+   |+ .|++|+.|++++|||++. .+++..+.+
T Consensus       324 D~~~RvWDlRtgr~im~L~--------gH~k----~I~~V~-fsPN---Gy-~lATgs~Dnt~kVWDLR~-r~~ly~ipA  385 (459)
T KOG0272|consen  324 DSLGRVWDLRTGRCIMFLA--------GHIK----EILSVA-FSPN---GY-HLATGSSDNTCKVWDLRM-RSELYTIPA  385 (459)
T ss_pred             cchhheeecccCcEEEEec--------cccc----ceeeEe-ECCC---ce-EEeecCCCCcEEEeeecc-cccceeccc
Confidence            9999999999999999998        7844    677887 9998   66 999999999999999998 888999999


Q ss_pred             cccceeEEEeec-CCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          251 HLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       251 h~~~v~~~~~~~-~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      |..-|+.+.|+| .|.+|+|+|.|++++||..++..+++++
T Consensus       386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL  426 (459)
T KOG0272|consen  386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL  426 (459)
T ss_pred             ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence            999999999998 8899999999999999999999888765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-39  Score=240.03  Aligned_cols=246  Identities=19%  Similarity=0.253  Sum_probs=196.7

Q ss_pred             CCceEEecCCccceeEEEEcC-----CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870            8 PDPVAVLRGHRASVTDVCFHQ-----TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      .+....|.||+..|++++|.|     ..++||+++.||.|+|||+..+.++..+.+|..+  |+|+.|--  + .++++|
T Consensus       190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~--VTCvrwGG--~-gliySg  264 (480)
T KOG0271|consen  190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS--VTCVRWGG--E-GLIYSG  264 (480)
T ss_pred             CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--eEEEEEcC--C-ceEEec
Confidence            344678999999999999987     4669999999999999999999999999999955  99999986  4 899999


Q ss_pred             eCCCeEEEEECCCCCCCCCCccccccceEEEEEeec-----------ccCc------------------------cceec
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL-----------VKEP------------------------YANAK  127 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~------------------------~~~~~  127 (291)
                      +.|++|++|+...+.+.+  .+..+.+-......+.           ....                        .....
T Consensus       265 S~DrtIkvw~a~dG~~~r--~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg  342 (480)
T KOG0271|consen  265 SQDRTIKVWRALDGKLCR--ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG  342 (480)
T ss_pred             CCCceEEEEEccchhHHH--hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence            999999999999887655  2222222222222210           0000                        01222


Q ss_pred             cCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCc
Q 022870          128 QANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG  203 (291)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  203 (291)
                      .++.....|+-.........+.+|+.    +.|+||++++.  +++.|..|++||.++++.+.+|.        ||    
T Consensus       343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA--SaSFDkSVkLW~g~tGk~lasfR--------GH----  408 (480)
T KOG0271|consen  343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA--SASFDKSVKLWDGRTGKFLASFR--------GH----  408 (480)
T ss_pred             cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE--EeecccceeeeeCCCcchhhhhh--------hc----
Confidence            33334444555555556667888887    99999997544  78889999999999999999998        78    


Q ss_pred             ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      -+.++.++ |+.|   .+ +|++|+.|.++++||+++ .+....+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus       409 v~~VYqva-wsaD---sR-LlVS~SkDsTLKvw~V~t-kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  409 VAAVYQVA-WSAD---SR-LLVSGSKDSTLKVWDVRT-KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cceeEEEE-eccC---cc-EEEEcCCCceEEEEEeee-eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            44678887 9987   44 999999999999999998 888899999999999999999999999999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.3e-39  Score=259.13  Aligned_cols=211  Identities=21%  Similarity=0.344  Sum_probs=184.6

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ....++.||.++|..+.|+|+.++|++++.|++||+|.+.+..++-..++|..  ||+.+.|+|  -|-+++|+|.|++-
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~--PVwdV~F~P--~GyYFatas~D~tA  517 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA--PVWDVQFAP--RGYYFATASHDQTA  517 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCc--ceeeEEecC--CceEEEecCCCcee
Confidence            34567999999999999999999999999999999999999999999999984  599999999  89999999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      ++|........+  ++..+-....+                                        +.|+|+..+++  +|
T Consensus       518 rLWs~d~~~PlR--ifaghlsDV~c----------------------------------------v~FHPNs~Y~a--TG  553 (707)
T KOG0263|consen  518 RLWSTDHNKPLR--IFAGHLSDVDC----------------------------------------VSFHPNSNYVA--TG  553 (707)
T ss_pred             eeeecccCCchh--hhcccccccce----------------------------------------EEECCcccccc--cC
Confidence            999988754433  22222111111                                        55999987665  89


Q ss_pred             CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      +.|.+|++||+.++..++.|.        ||    .+.+.+++ |+|+   |+ +|++|+.||.|.+||+.+ +.++..+
T Consensus       554 SsD~tVRlWDv~~G~~VRiF~--------GH----~~~V~al~-~Sp~---Gr-~LaSg~ed~~I~iWDl~~-~~~v~~l  615 (707)
T KOG0263|consen  554 SSDRTVRLWDVSTGNSVRIFT--------GH----KGPVTALA-FSPC---GR-YLASGDEDGLIKIWDLAN-GSLVKQL  615 (707)
T ss_pred             CCCceEEEEEcCCCcEEEEec--------CC----CCceEEEE-EcCC---Cc-eEeecccCCcEEEEEcCC-Ccchhhh
Confidence            999999999999999999998        87    56788887 9998   66 999999999999999998 8999999


Q ss_pred             cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      .+|.+.|.+|.|+.+|..||+||.|++|++||+..-.
T Consensus       616 ~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  616 KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             hcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            9999999999999999999999999999999987543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-38  Score=228.01  Aligned_cols=214  Identities=22%  Similarity=0.358  Sum_probs=181.2

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      +.+++.|+||+..|..+..++||++.++++.|+++++||+.+++..+.|.+|...  |.+++|++  |.+++++|+.|.+
T Consensus        53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d--Vlsva~s~--dn~qivSGSrDkT  128 (315)
T KOG0279|consen   53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD--VLSVAFST--DNRQIVSGSRDKT  128 (315)
T ss_pred             CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc--eEEEEecC--CCceeecCCCcce
Confidence            4678999999999999999999999999999999999999999999999999966  99999999  9899999999999


Q ss_pred             EEEEECCCCCCCCCCccccccce---EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNS---YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      |++||+.....     +++....   ...|                                       +.|+|.....+
T Consensus       129 iklwnt~g~ck-----~t~~~~~~~~WVsc---------------------------------------vrfsP~~~~p~  164 (315)
T KOG0279|consen  129 IKLWNTLGVCK-----YTIHEDSHREWVSC---------------------------------------VRFSPNESNPI  164 (315)
T ss_pred             eeeeeecccEE-----EEEecCCCcCcEEE---------------------------------------EEEcCCCCCcE
Confidence            99999886532     2332221   1122                                       56999865555


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                      +++++.|++|++||+++.+....+.        +|    .+.+..+. ++||++    ..++|+.||.+.+||++. ++.
T Consensus       165 Ivs~s~DktvKvWnl~~~~l~~~~~--------gh----~~~v~t~~-vSpDGs----lcasGgkdg~~~LwdL~~-~k~  226 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNCQLRTTFI--------GH----SGYVNTVT-VSPDGS----LCASGGKDGEAMLWDLNE-GKN  226 (315)
T ss_pred             EEEccCCceEEEEccCCcchhhccc--------cc----cccEEEEE-ECCCCC----EEecCCCCceEEEEEccC-Cce
Confidence            5588899999999999998888777        76    55777776 999954    999999999999999998 777


Q ss_pred             eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      ++.+. |...|.+++|+|+...|+.+. +..|+|||++++.++..
T Consensus       227 lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~  269 (315)
T KOG0279|consen  227 LYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEE  269 (315)
T ss_pred             eEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhh
Confidence            77776 689999999999987776665 55699999999988754

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=213.75  Aligned_cols=222  Identities=18%  Similarity=0.292  Sum_probs=176.4

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      +.|+.++++|++.|+++.|..+|+.++||+.||++||||++...+.+.++ |.  ++|.++..+|  +...|++|..+|.
T Consensus        73 p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~--spVn~vvlhp--nQteLis~dqsg~  147 (311)
T KOG0315|consen   73 PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HN--SPVNTVVLHP--NQTELISGDQSGN  147 (311)
T ss_pred             CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CC--CCcceEEecC--CcceEEeecCCCc
Confidence            35899999999999999999999999999999999999999877766665 33  5699999999  7789999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (291)
                      |++||+.+..+..+++..... ... .                                       ++..|+|..+.+  
T Consensus       148 irvWDl~~~~c~~~liPe~~~-~i~-s---------------------------------------l~v~~dgsml~a--  184 (311)
T KOG0315|consen  148 IRVWDLGENSCTHELIPEDDT-SIQ-S---------------------------------------LTVMPDGSMLAA--  184 (311)
T ss_pred             EEEEEccCCccccccCCCCCc-cee-e---------------------------------------EEEcCCCcEEEE--
Confidence            999999988665532222111 000 0                                       457899987764  


Q ss_pred             cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (291)
                      +...|..++|++-..+....+....  ....|    ++.+..+. |+|+.   + +|++++.|.+++||+.++.-+....
T Consensus       185 ~nnkG~cyvW~l~~~~~~s~l~P~~--k~~ah----~~~il~C~-lSPd~---k-~lat~ssdktv~iwn~~~~~kle~~  253 (311)
T KOG0315|consen  185 ANNKGNCYVWRLLNHQTASELEPVH--KFQAH----NGHILRCL-LSPDV---K-YLATCSSDKTVKIWNTDDFFKLELV  253 (311)
T ss_pred             ecCCccEEEEEccCCCccccceEhh--heecc----cceEEEEE-ECCCC---c-EEEeecCCceEEEEecCCceeeEEE
Confidence            3446999999997754333222100  00033    55677776 99984   4 9999999999999999985466778


Q ss_pred             ccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      +++|..+++.++|+.+|.||++++.|+.+++|+++.++.++
T Consensus       254 l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  254 LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             eecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence            89999999999999999999999999999999999998664

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-36  Score=216.82  Aligned_cols=219  Identities=20%  Similarity=0.284  Sum_probs=183.2

Q ss_pred             CceEEecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCC-----CeEEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      ....+|++|++.|+.++..+. ...+++++.|.++.+|++..     |..++.+.+|.+.  |..+..++  +|++.+++
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~--v~dv~~s~--dg~~alS~   81 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHF--VSDVVLSS--DGNFALSA   81 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceE--ecceEEcc--CCceEEec
Confidence            345689999999999999984 67899999999999998754     6678899999977  99999999  99999999


Q ss_pred             eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCc
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (291)
                      +.|+++++||+.+++..+  .+..+......                                        ++|+++++.
T Consensus        82 swD~~lrlWDl~~g~~t~--~f~GH~~dVls----------------------------------------va~s~dn~q  119 (315)
T KOG0279|consen   82 SWDGTLRLWDLATGESTR--RFVGHTKDVLS----------------------------------------VAFSTDNRQ  119 (315)
T ss_pred             cccceEEEEEecCCcEEE--EEEecCCceEE----------------------------------------EEecCCCce
Confidence            999999999999985432  12222111111                                        669999987


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                      ++  +|+.|++|++|++... +..++..        +.  .+..+.++. |+|+.. . .+|++++.|++|++||+++ .
T Consensus       120 iv--SGSrDkTiklwnt~g~-ck~t~~~--------~~--~~~WVscvr-fsP~~~-~-p~Ivs~s~DktvKvWnl~~-~  182 (315)
T KOG0279|consen  120 IV--SGSRDKTIKLWNTLGV-CKYTIHE--------DS--HREWVSCVR-FSPNES-N-PIIVSASWDKTVKVWNLRN-C  182 (315)
T ss_pred             ee--cCCCcceeeeeeeccc-EEEEEec--------CC--CcCcEEEEE-EcCCCC-C-cEEEEccCCceEEEEccCC-c
Confidence            76  9999999999999754 5555542        21  167899997 999843 2 2999999999999999998 8


Q ss_pred             CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +....+.+|.+.++.++++|||...++|+.||.+.+||++.++.++.+
T Consensus       183 ~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl  230 (315)
T KOG0279|consen  183 QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL  230 (315)
T ss_pred             chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence            888999999999999999999999999999999999999999988764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.3e-36  Score=216.74  Aligned_cols=244  Identities=17%  Similarity=0.263  Sum_probs=192.7

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe-------------------------------
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-------------------------------   57 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------------------------------   57 (291)
                      +..++|+||.+.|.++.|++|.+++++++.||.+.|||.-+.+.++-++                               
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            3458899999999999999999999999999999999987755444333                               


Q ss_pred             -----------------eecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeeccc
Q 022870           58 -----------------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK  120 (291)
Q Consensus        58 -----------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (291)
                                       +|.+-  +.|+.|.+  | ..|+|++.|.+..+||+++++...    .++.+......+++..
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgy--lScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~----~f~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGY--LSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQ----VFHGHTGDVMSLSLSP  196 (343)
T ss_pred             cccccccccceeeeeecCccce--eEEEEEcC--C-CceEecCCCceEEEEEcccceEEE----EecCCcccEEEEecCC
Confidence                             44433  66666666  5 778888888899999999887644    4444444444444444


Q ss_pred             Ccc--ceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccC
Q 022870          121 EPY--ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG  194 (291)
Q Consensus       121 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~  194 (291)
                      +..  ...........+|+++.. .....+.+|..    ++|.|+|..+.  +|+.|++.++||+|..+.+..+..    
T Consensus       197 ~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afa--tGSDD~tcRlyDlRaD~~~a~ys~----  269 (343)
T KOG0286|consen  197 SDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFA--TGSDDATCRLYDLRADQELAVYSH----  269 (343)
T ss_pred             CCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeee--ecCCCceeEEEeecCCcEEeeecc----
Confidence            222  222333456677888887 44456777766    99999997554  899999999999999988888873    


Q ss_pred             CCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC
Q 022870          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ  274 (291)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  274 (291)
                            ......+.++. |+..   |+ +|++|..|..+.+||.-. ++.+..|.+|+..|+++..+|||..|+|||.|.
T Consensus       270 ------~~~~~gitSv~-FS~S---GR-lLfagy~d~~c~vWDtlk-~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  270 ------DSIICGITSVA-FSKS---GR-LLFAGYDDFTCNVWDTLK-GERVGVLAGHENRVSCLGVSPDGMAVATGSWDS  337 (343)
T ss_pred             ------CcccCCceeEE-Eccc---cc-EEEeeecCCceeEeeccc-cceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence                  22456678887 9987   66 999999999999999987 888999999999999999999999999999999


Q ss_pred             eEEEEE
Q 022870          275 KIVLYN  280 (291)
Q Consensus       275 ~i~vw~  280 (291)
                      .+|||.
T Consensus       338 ~lriW~  343 (343)
T KOG0286|consen  338 TLRIWA  343 (343)
T ss_pred             heeecC
Confidence            999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.8e-36  Score=227.20  Aligned_cols=244  Identities=17%  Similarity=0.304  Sum_probs=192.3

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      +..|++|+|+.+|..||+|+.||.+++|+. +|..+.++..|+++  |.++.|+.  .|++|++++.|+++.+||..++.
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgP--I~slKWnk--~G~yilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGP--IFSLKWNK--KGTYILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCc--eEEEEEcC--CCCEEEeccCCccEEEEeccCce
Confidence            467999999999999999999999999995 68888888888854  99999999  99999999999999999998887


Q ss_pred             CCCCCccccccceEEEEEeecccCccceec--cCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCc
Q 022870           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAK--QANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d  171 (291)
                      ..+  .++++..+.    ..+.+.......  ...+...++.+...+... .+.+|..    +.|+|.+.. ++ +++.|
T Consensus       310 ~~q--~f~~~s~~~----lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~-t~~GH~g~V~alk~n~tg~L-La-S~SdD  380 (524)
T KOG0273|consen  310 VKQ--QFEFHSAPA----LDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK-TFIGHHGEVNALKWNPTGSL-LA-SCSDD  380 (524)
T ss_pred             EEE--eeeeccCCc----cceEEecCceEeecCCCceEEEEEecCCCcce-eeecccCceEEEEECCCCce-EE-EecCC
Confidence            644  334443331    112222222222  233345555555544444 4455766    899999964 44 67789


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCC-----CceEEEeecCCCcEEEEEccCCCCcee
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ-----GFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-----g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      ++++||.+........+.        +|..    .++.+. |+|.++-     ....+++++.|++|++||+.. +.++.
T Consensus       381 ~TlkiWs~~~~~~~~~l~--------~Hsk----ei~t~~-wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~  446 (524)
T KOG0273|consen  381 GTLKIWSMGQSNSVHDLQ--------AHSK----EIYTIK-WSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIH  446 (524)
T ss_pred             CeeEeeecCCCcchhhhh--------hhcc----ceeeEe-ecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeE
Confidence            999999999888888887        6744    456665 8886431     123799999999999999998 99999


Q ss_pred             eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .|..|..+|.+++|+|+|+++|+|+.||.|.+|+.++++++++
T Consensus       447 ~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s  489 (524)
T KOG0273|consen  447 TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS  489 (524)
T ss_pred             eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence            9999999999999999999999999999999999999999876

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.4e-35  Score=219.20  Aligned_cols=216  Identities=22%  Similarity=0.365  Sum_probs=185.0

Q ss_pred             CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      .|-+..+.+.||.+.|.|+++.|-..+|++|+.|++++|||+.++++..++.+|...  |..+++++  ...++++++.|
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~--vr~vavS~--rHpYlFs~ged  214 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET--VRGVAVSK--RHPYLFSAGED  214 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhhe--eeeeeecc--cCceEEEecCC
Confidence            355778899999999999999999999999999999999999999999999999966  99999999  77899999999


Q ss_pred             CeEEEEECCCCCCCCCCccccccceE-EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      +.|+.||++.++.++    ..+.+-. ..+                                       ++.+|.-+.++
T Consensus       215 k~VKCwDLe~nkvIR----~YhGHlS~V~~---------------------------------------L~lhPTldvl~  251 (460)
T KOG0285|consen  215 KQVKCWDLEYNKVIR----HYHGHLSGVYC---------------------------------------LDLHPTLDVLV  251 (460)
T ss_pred             CeeEEEechhhhhHH----HhccccceeEE---------------------------------------EeccccceeEE
Confidence            999999999987654    2222211 111                                       45777766444


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                        +|+.|..+++||+++...+..+.        ||..    .+.++. +.|.++    .+++|+.|++|++||++. ++.
T Consensus       252 --t~grDst~RvWDiRtr~~V~~l~--------GH~~----~V~~V~-~~~~dp----qvit~S~D~tvrlWDl~a-gkt  311 (460)
T KOG0285|consen  252 --TGGRDSTIRVWDIRTRASVHVLS--------GHTN----PVASVM-CQPTDP----QVITGSHDSTVRLWDLRA-GKT  311 (460)
T ss_pred             --ecCCcceEEEeeecccceEEEec--------CCCC----cceeEE-eecCCC----ceEEecCCceEEEeeecc-Cce
Confidence              78889999999999999999998        8844    566665 777643    699999999999999998 899


Q ss_pred             eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      +..+..|...|.+++.+|....+|++|.|. |+-|++..+.+++.
T Consensus       312 ~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n  355 (460)
T KOG0285|consen  312 MITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN  355 (460)
T ss_pred             eEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc
Confidence            999999999999999999999999999885 99999999988765

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.4e-34  Score=205.63  Aligned_cols=257  Identities=16%  Similarity=0.228  Sum_probs=202.7

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCC-CCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .|+..+.||++.|+.+.|+|+|.+||||+.|..|.+|++. ..+....+++|.++  |..+.|.+  |++.+++++.|.+
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgA--VM~l~~~~--d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGA--VMELHGMR--DGSHILSCGTDKT  113 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccce--eEeeeecc--CCCEEEEecCCce
Confidence            4566788999999999999999999999999999999954 45667788899966  99999999  9999999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEE
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA  165 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  165 (291)
                      |+.||.++++...  ....+..-...+...-................+|+++....+.......+.  +.|.-++...+ 
T Consensus       114 v~~wD~~tG~~~r--k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~-  190 (338)
T KOG0265|consen  114 VRGWDAETGKRIR--KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI-  190 (338)
T ss_pred             EEEEecccceeee--hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccccee-
Confidence            9999999998755  222332223333222223334455666777888998877665544333333  77888887777 


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC---C
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---G  242 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~---~  242 (291)
                       +|.-|+.|++||++.+.....+.        ||.+    .++.+. .+|++.    ++.+-+.|.++++||++-.   .
T Consensus       191 -sggIdn~ikvWd~r~~d~~~~ls--------Gh~D----tIt~ls-ls~~gs----~llsnsMd~tvrvwd~rp~~p~~  252 (338)
T KOG0265|consen  191 -SGGIDNDIKVWDLRKNDGLYTLS--------GHAD----TITGLS-LSRYGS----FLLSNSMDNTVRVWDVRPFAPSQ  252 (338)
T ss_pred             -eccccCceeeeccccCcceEEee--------cccC----ceeeEE-eccCCC----ccccccccceEEEEEecccCCCC
Confidence             78889999999999999999998        8855    566665 888844    8999999999999999841   2


Q ss_pred             Cceeecccccc----ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          243 IPLTAMKVHLE----PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       243 ~~~~~~~~h~~----~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +++..+.+|..    ....++|+|++..+.+|+.|..+++||..+.++++.+
T Consensus       253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl  304 (338)
T KOG0265|consen  253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL  304 (338)
T ss_pred             ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc
Confidence            44677777643    4567899999999999999999999999998888764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.7e-34  Score=199.46  Aligned_cols=255  Identities=15%  Similarity=0.203  Sum_probs=199.7

Q ss_pred             CCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      ..|.+.++++..|+++|+++.|+-+|+|.++++.|.+|++|+...+.++++..+|..+  |..++.+.  |...|++++.
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E--VlD~~~s~--Dnskf~s~Gg   79 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE--VLDAALSS--DNSKFASCGG   79 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce--eeeccccc--cccccccCCC
Confidence            3566788999999999999999999999999999999999999999999999999977  99999998  8899999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCcc-ceeccCCCCceeeecccCccccccC-CCCCC--cccCCCC
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDS-LCDSK--DDVPAEG  160 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~  160 (291)
                      |..+.+||+++++..+    .+..+......+.+..... ............|+.+.......+. .....  ....-.+
T Consensus        80 Dk~v~vwDV~TGkv~R----r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~  155 (307)
T KOG0316|consen   80 DKAVQVWDVNTGKVDR----RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE  155 (307)
T ss_pred             CceEEEEEcccCeeee----ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc
Confidence            9999999999998866    4444433333333332222 2334445667788877665333322 22222  3333344


Q ss_pred             CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      ..++  +|+.||+++.||++.++....+-        +|      ++.++. |++++   . ..++++.|+.|++.|-.+
T Consensus       156 heIv--aGS~DGtvRtydiR~G~l~sDy~--------g~------pit~vs-~s~d~---n-c~La~~l~stlrLlDk~t  214 (307)
T KOG0316|consen  156 HEIV--AGSVDGTVRTYDIRKGTLSSDYF--------GH------PITSVS-FSKDG---N-CSLASSLDSTLRLLDKET  214 (307)
T ss_pred             cEEE--eeccCCcEEEEEeecceeehhhc--------CC------cceeEE-ecCCC---C-EEEEeeccceeeecccch
Confidence            3344  79999999999999998766554        33      677887 99984   4 899999999999999998


Q ss_pred             CCCceeecccccccee--EEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          241 PGIPLTAMKVHLEPVL--CLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       241 ~~~~~~~~~~h~~~v~--~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                       ++.++.+++|...=.  ..++......+++||+||.|++||+...+++.+
T Consensus       215 -GklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk  264 (307)
T KOG0316|consen  215 -GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK  264 (307)
T ss_pred             -hHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee
Confidence             999999999987544  446677777899999999999999998887754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-34  Score=213.34  Aligned_cols=257  Identities=17%  Similarity=0.253  Sum_probs=199.3

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+++|...  |..++|+.  .|.++++++.|-.+
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s--v~di~~~a--~Gk~l~tcSsDl~~  174 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS--VFDISFDA--SGKYLATCSSDLSA  174 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc--eeEEEEec--CccEEEecCCccch
Confidence            456678889999999999999999999999999999999999999999999965  99999999  89999999999999


Q ss_pred             EEEECCCC-CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcE
Q 022870           89 KCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (291)
Q Consensus        89 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (291)
                      ++||..+. ++..  ....+.+......+-+.... ............|++..+..+. .+.+|..    ++.+.||  .
T Consensus       175 ~LWd~~~~~~c~k--s~~gh~h~vS~V~f~P~gd~-ilS~srD~tik~We~~tg~cv~-t~~~h~ewvr~v~v~~DG--t  248 (406)
T KOG0295|consen  175 KLWDFDTFFRCIK--SLIGHEHGVSSVFFLPLGDH-ILSCSRDNTIKAWECDTGYCVK-TFPGHSEWVRMVRVNQDG--T  248 (406)
T ss_pred             hheeHHHHHHHHH--HhcCcccceeeEEEEecCCe-eeecccccceeEEecccceeEE-eccCchHhEEEEEecCCe--e
Confidence            99999873 2221  12223333333333333311 2222233445667776665443 4566666    5666666  3


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC------------CCCCceEEEeecCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS------------KSQGFVNVLAGYEDG  231 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------~~~g~~~l~~g~~dg  231 (291)
                      ++++++.|.++++|-+.++++...+.        .|+.+    +-+++ |.|.            ...++ ++.+++.|+
T Consensus       249 i~As~s~dqtl~vW~~~t~~~k~~lR--------~hEh~----vEci~-wap~~~~~~i~~at~~~~~~~-~l~s~SrDk  314 (406)
T KOG0295|consen  249 IIASCSNDQTLRVWVVATKQCKAELR--------EHEHP----VECIA-WAPESSYPSISEATGSTNGGQ-VLGSGSRDK  314 (406)
T ss_pred             EEEecCCCceEEEEEeccchhhhhhh--------ccccc----eEEEE-ecccccCcchhhccCCCCCcc-EEEeecccc
Confidence            44478889999999999998888777        56443    33333 5553            11234 999999999


Q ss_pred             cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +|++||+.+ +.++.++.+|..+|.+++|+|.|+||+|+.+|+++++||+++.++.+++
T Consensus       315 tIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~  372 (406)
T KOG0295|consen  315 TIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL  372 (406)
T ss_pred             eEEEEeccC-CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc
Confidence            999999999 8999999999999999999999999999999999999999999988764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-34  Score=227.20  Aligned_cols=256  Identities=16%  Similarity=0.231  Sum_probs=217.3

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      .+++..|+..|.++.|+|....++++-.+|.|.|||.++...+++++...  .||.+..|.+  ..+.+++|+.|..|++
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~--~PvRa~kfia--RknWiv~GsDD~~IrV   81 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE--VPVRAAKFIA--RKNWIVTGSDDMQIRV   81 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc--cchhhheeee--ccceEEEecCCceEEE
Confidence            34566799999999999999999999999999999999999999998877  5599999999  7789999999999999


Q ss_pred             EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEE
Q 022870           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV  166 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  166 (291)
                      |+..+.+.+.  .+..+..........+ ..|......+......|+.+........+.+|..    ++|+|...+.++ 
T Consensus        82 fnynt~ekV~--~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa-  157 (794)
T KOG0276|consen   82 FNYNTGEKVK--TFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA-  157 (794)
T ss_pred             EecccceeeE--EeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee-
Confidence            9999997655  3333333333333322 2455566777888999999999999999999998    999999988887 


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +++.|++|++|.+.+..+..+++        +|...    +.++. |-|.+  .+.+|++|++|..|+|||.++ ..+++
T Consensus       158 S~sLDrTVKVWslgs~~~nfTl~--------gHekG----VN~Vd-yy~~g--dkpylIsgaDD~tiKvWDyQt-k~CV~  221 (794)
T KOG0276|consen  158 SASLDRTVKVWSLGSPHPNFTLE--------GHEKG----VNCVD-YYTGG--DKPYLISGADDLTIKVWDYQT-KSCVQ  221 (794)
T ss_pred             eeeccccEEEEEcCCCCCceeee--------ccccC----cceEE-eccCC--CcceEEecCCCceEEEeecch-HHHHH
Confidence            67889999999999999999999        88553    45555 77653  233999999999999999999 99999


Q ss_pred             eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ++.||...|..+.|+|.-..++|||+||++|||+-.+.++..++
T Consensus       222 TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL  265 (794)
T KOG0276|consen  222 TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL  265 (794)
T ss_pred             HhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence            99999999999999999999999999999999999988776554

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-34  Score=214.61  Aligned_cols=259  Identities=16%  Similarity=0.209  Sum_probs=182.6

Q ss_pred             CCCCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC---eEEEEEeeecCCcceEEEEEeecCCCCeE
Q 022870            3 KRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKV   79 (291)
Q Consensus         3 ~~~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l   79 (291)
                      +...|.+..+++..|+++|+-+.||++|++||+++.|.+..+|++...   +..+++.+|..  +|.-+.|+|  |.++|
T Consensus       209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~--~V~yi~wSP--DdryL  284 (519)
T KOG0293|consen  209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ--PVSYIMWSP--DDRYL  284 (519)
T ss_pred             cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccC--ceEEEEECC--CCCeE
Confidence            445677888999999999999999999999999999999999987543   45778888884  499999999  99999


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc----------------
Q 022870           80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET----------------  143 (291)
Q Consensus        80 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  143 (291)
                      ++++.|..+.+||+.++.+....... .......+.+.+..........+ .....|+.+....                
T Consensus       285 laCg~~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~d-r~i~~wdlDgn~~~~W~gvr~~~v~dlai  362 (519)
T KOG0293|consen  285 LACGFDEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPD-RTIIMWDLDGNILGNWEGVRDPKVHDLAI  362 (519)
T ss_pred             EecCchHheeeccCCcchhhhhcccC-cCCCcceeEEccCCceeEecCCC-CcEEEecCCcchhhcccccccceeEEEEE
Confidence            99999999999999999875421111 23344555555554432221111 1111111111100                


Q ss_pred             ------------------------ccc-cCCCCCC---cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCC
Q 022870          144 ------------------------VDT-DSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG  195 (291)
Q Consensus       144 ------------------------~~~-~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~  195 (291)
                                              ... ....++.   .+.+.+++..+  ..-.+..+++||++..+.++++.      
T Consensus       363 t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~L--vnL~~qei~LWDl~e~~lv~kY~------  434 (519)
T KOG0293|consen  363 TYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLAL--VNLQDQEIHLWDLEENKLVRKYF------  434 (519)
T ss_pred             cCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEE--EEcccCeeEEeecchhhHHHHhh------
Confidence                                    000 1111222   45556665444  33346778888888777777777      


Q ss_pred             CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCC-CeeEEecCCC
Q 022870          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQ  274 (291)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg  274 (291)
                        ||...  ..+...+ |.-.  +.. ++++|++|+.|+||+..+ ++++..+.||...|++++|+|.. .++|++|+||
T Consensus       435 --Ghkq~--~fiIrSC-Fgg~--~~~-fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg  505 (519)
T KOG0293|consen  435 --GHKQG--HFIIRSC-FGGG--NDK-FIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG  505 (519)
T ss_pred             --ccccc--ceEEEec-cCCC--Ccc-eEEecCCCceEEEEEccC-CceeEeecCCcceeeEEecCCCCHHHhhccCCCC
Confidence              77553  2333332 6543  123 999999999999999998 99999999999999999998854 4689999999


Q ss_pred             eEEEEEcCCC
Q 022870          275 KIVLYNLDHS  284 (291)
Q Consensus       275 ~i~vw~~~~~  284 (291)
                      +||||.....
T Consensus       506 tIRIWg~~~~  515 (519)
T KOG0293|consen  506 TIRIWGPSDN  515 (519)
T ss_pred             eEEEecCCcc
Confidence            9999987643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.9e-33  Score=214.59  Aligned_cols=267  Identities=15%  Similarity=0.231  Sum_probs=195.6

Q ss_pred             CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe---eecCCcceEEEEEeecCCCCeEEEE
Q 022870            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      ||.+...+++.|..-|+|+.|+|||.+++|++.||++.+||=.+++.+..+.   .|.+.  |.+++|+|  |+.+++++
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGs--IfalsWsP--Ds~~~~T~  253 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGS--IFALSWSP--DSTQFLTV  253 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcccc--EEEEEECC--CCceEEEe
Confidence            4557778899999999999999999999999999999999999999999998   77755  99999999  99999999


Q ss_pred             eCCCeEEEEECCCCCCCCCCccccccceEEEEEeeccc-CccceeccCCCCceeeecccCccccccCCCCCC----cccC
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (291)
                      +.|.+++|||+.+.++..+  +.+... .....+...+ .........++....++..... +.....+|..    ++.+
T Consensus       254 SaDkt~KIWdVs~~slv~t--~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~  329 (603)
T KOG0318|consen  254 SADKTIKIWDVSTNSLVST--WPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVS  329 (603)
T ss_pred             cCCceEEEEEeeccceEEE--eecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEc
Confidence            9999999999999987652  222211 1111111111 2233344455556666666666 6777888888    8899


Q ss_pred             CCCCcEEEEecCCcCeEEEEeCCCcceee-----------Eeccc----------------------ccCC----CCCC-
Q 022870          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCT-----------RLHQN----------------------SCGG----SPNF-  199 (291)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~~-----------~~~~~----------------------~~~~----~~~~-  199 (291)
                      |++.+++  +|+.||.|.-||..++..-+           .+...                      ....    ..++ 
T Consensus       330 ~d~~~i~--SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q  407 (603)
T KOG0318|consen  330 PDGKTIY--SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ  407 (603)
T ss_pred             CCCCEEE--eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence            9998777  89999999999986543210           00000                      0000    0000 


Q ss_pred             ---------------------------------------------------------------------------CCCcc
Q 022870          200 ---------------------------------------------------------------------------SSKGR  204 (291)
Q Consensus       200 ---------------------------------------------------------------------------~~~~~  204 (291)
                                                                                                 ..+++
T Consensus       408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~  487 (603)
T KOG0318|consen  408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR  487 (603)
T ss_pred             ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence                                                                                       01223


Q ss_pred             eeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      +.++.++ |+|+   +. +|++|...+.+.+||+.+.......+.-|.+.|.+++|+|+..++||||-|-.|.||+++..
T Consensus       488 a~iT~va-ySpd---~~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP  562 (603)
T KOG0318|consen  488 AAITDVA-YSPD---GA-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP  562 (603)
T ss_pred             CCceEEE-ECCC---Cc-EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence            4456676 8887   44 88888888888888888733444456679999999999999999999999999999999876


Q ss_pred             cee
Q 022870          285 TVS  287 (291)
Q Consensus       285 ~~~  287 (291)
                      ...
T Consensus       563 ~~~  565 (603)
T KOG0318|consen  563 AKH  565 (603)
T ss_pred             hhh
Confidence            543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.1e-35  Score=223.23  Aligned_cols=256  Identities=17%  Similarity=0.263  Sum_probs=198.6

Q ss_pred             CCCceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCC-CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      |.+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..  +|..++|+.  +|..+++++.
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k--~Vrd~~~s~--~g~~fLS~sf  278 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK--PVRDASFNN--CGTSFLSASF  278 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchh--hhhhhhccc--cCCeeeeeec
Confidence            6678999999999999999999 899999999999999999876 899999999994  499999999  9999999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccce-EEEEEeecccCccceeccCCCCceeeecccCcccccc---CCCCCCcccCCCC
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD---SLCDSKDDVPAEG  160 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  160 (291)
                      |+.|++||++++++..    .++... .....+.+.......+......+..|+++....+...   +..-..+.|-++|
T Consensus       279 D~~lKlwDtETG~~~~----~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g  354 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLS----RFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG  354 (503)
T ss_pred             ceeeeeeccccceEEE----EEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC
Confidence            9999999999998754    444332 2334455555444455566677888899888754332   1112228899999


Q ss_pred             CcEEEEecCCcCeEEEEeCCCcceeeEecccc--------------------------------------cCCCCCCCCC
Q 022870          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS--------------------------------------CGGSPNFSSK  202 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~  202 (291)
                      ++++  +.+.|+++++|+.+...++.......                                      ...+.||.  
T Consensus       355 ~rFi--ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~--  430 (503)
T KOG0282|consen  355 RRFI--SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS--  430 (503)
T ss_pred             ceEe--eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee--
Confidence            8877  67779999999987654332211100                                      00001222  


Q ss_pred             cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecC-CCeeEEecCCCeEEEEE
Q 022870          203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYN  280 (291)
Q Consensus       203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~  280 (291)
                      ..+..+.+. |+|+   |. +|++|..||.+.+||.++ .+.+..+++|.+++..+.|+|. ...+||++.||.|++|+
T Consensus       431 vaGys~~v~-fSpD---G~-~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  431 VAGYSCQVD-FSPD---GR-TLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ccCceeeEE-EcCC---CC-eEEeecCCccEEEeechh-hhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            234566776 9999   55 999999999999999999 8999999999999999999874 33689999999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.7e-34  Score=229.79  Aligned_cols=221  Identities=17%  Similarity=0.293  Sum_probs=181.6

Q ss_pred             CCCCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-------------------------------
Q 022870            3 KRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-------------------------------   51 (291)
Q Consensus         3 ~~~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-------------------------------   51 (291)
                      ++..|.-+..++..-...++|..|++|+.+||.|-.|..|++|.+...+                               
T Consensus       363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~  442 (707)
T KOG0263|consen  363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG  442 (707)
T ss_pred             CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence            3446667778887777889999999999999999999999999986311                               


Q ss_pred             EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCC
Q 022870           52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE  131 (291)
Q Consensus        52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (291)
                      ..+++-+|.++  |..+.|+|  +.++|+++|+|+++|+|.+.+..+..  .+..+..+...                  
T Consensus       443 ~~~~L~GH~GP--Vyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V--~y~GH~~PVwd------------------  498 (707)
T KOG0263|consen  443 TSRTLYGHSGP--VYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLV--IYKGHLAPVWD------------------  498 (707)
T ss_pred             eeEEeecCCCc--eeeeeecc--cccceeeccCCcceeeeecccceeEE--EecCCCcceee------------------
Confidence            13345678855  99999999  98999999999999999999876533  22222222211                  


Q ss_pred             CceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEE
Q 022870          132 PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ  211 (291)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (291)
                                            +.|+|.|- .|| +++.|++.++|.....++++.+.        +|..    -+-++.
T Consensus       499 ----------------------V~F~P~Gy-YFa-tas~D~tArLWs~d~~~PlRifa--------ghls----DV~cv~  542 (707)
T KOG0263|consen  499 ----------------------VQFAPRGY-YFA-TASHDQTARLWSTDHNKPLRIFA--------GHLS----DVDCVS  542 (707)
T ss_pred             ----------------------EEecCCce-EEE-ecCCCceeeeeecccCCchhhhc--------cccc----ccceEE
Confidence                                  45888884 444 67889999999999988888888        7744    455665


Q ss_pred             EecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       212 ~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                       |+|+..    |+++|+.|.+||+||+.+ +..++.|.||.++|++++|+|+|++|++|+.||.|.+||+.+++++..
T Consensus       543 -FHPNs~----Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~  614 (707)
T KOG0263|consen  543 -FHPNSN----YVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ  614 (707)
T ss_pred             -ECCccc----ccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh
Confidence             999855    999999999999999999 899999999999999999999999999999999999999999887654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.3e-33  Score=226.78  Aligned_cols=216  Identities=24%  Similarity=0.391  Sum_probs=177.9

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeC-CCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ..+.+.+|...|++++|+|++.++++|+.|++++|||+ ..+..++++++|...  |++++|+|  +++++++|+.|++|
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~--v~~~~f~p--~g~~i~Sgs~D~tv  270 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY--VTSVAFSP--DGNLLVSGSDDGTV  270 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc--eEEEEecC--CCCEEEEecCCCcE
Confidence            56777899999999999999999999999999999999 556899999999955  99999999  88999999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      ++||++++++..  .+..+......                                        ++|++++..++  ++
T Consensus       271 riWd~~~~~~~~--~l~~hs~~is~----------------------------------------~~f~~d~~~l~--s~  306 (456)
T KOG0266|consen  271 RIWDVRTGECVR--KLKGHSDGISG----------------------------------------LAFSPDGNLLV--SA  306 (456)
T ss_pred             EEEeccCCeEEE--eeeccCCceEE----------------------------------------EEECCCCCEEE--Ec
Confidence            999999976644  22222222222                                        45889987665  55


Q ss_pred             CCcCeEEEEeCCCcc--eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          169 EQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +.|+.|++||+.+++  +...+.        ++... . .+..+. |+|+   +. ++++++.|+.+++||++. ...+.
T Consensus       307 s~d~~i~vwd~~~~~~~~~~~~~--------~~~~~-~-~~~~~~-fsp~---~~-~ll~~~~d~~~~~w~l~~-~~~~~  370 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKLCLKLLS--------GAENS-A-PVTSVQ-FSPN---GK-YLLSASLDRTLKLWDLRS-GKSVG  370 (456)
T ss_pred             CCCccEEEEECCCCceeeeeccc--------CCCCC-C-ceeEEE-ECCC---Cc-EEEEecCCCeEEEEEccC-Cccee
Confidence            779999999999998  456665        44332 2 677777 9998   44 999999999999999998 88889


Q ss_pred             eccccccce---eEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          247 AMKVHLEPV---LCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       247 ~~~~h~~~v---~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .+.+|...+   .+....+.+.++++|+.|+.|++|++.++..++.
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~  416 (456)
T KOG0266|consen  371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR  416 (456)
T ss_pred             eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh
Confidence            999887753   3444488999999999999999999998776654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=7.5e-32  Score=199.73  Aligned_cols=257  Identities=12%  Similarity=0.191  Sum_probs=198.6

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ..+.+|..|+++|.+++.+|+.++++||+.|..-.+|++.++.....+.+|+..  |+++.|+.  +|.+|+||+.+|.|
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDS--Vt~~~Fsh--dgtlLATGdmsG~v  130 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDS--VTCCSFSH--DGTLLATGDMSGKV  130 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCc--eEEEEEcc--CceEEEecCCCccE
Confidence            457789999999999999999999999999999999999999999999999955  99999999  99999999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (291)
                      +||+..++....  .+.-......-..+.+ ......+....+..-+|.+... .....+.+|+.    =.|.|+|++++
T Consensus       131 ~v~~~stg~~~~--~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  131 LVFKVSTGGEQW--KLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             EEEEcccCceEE--EeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEE
Confidence            999999987644  1111223333333443 2233444455556666666554 45556677766    67999999887


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEeccc------ccCC-C-----------------------------------------
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQN------SCGG-S-----------------------------------------  196 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~------~~~~-~-----------------------------------------  196 (291)
                        +|..||+|++||+.+++++..+...      +... .                                         
T Consensus       207 --tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~  284 (399)
T KOG0296|consen  207 --TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEE  284 (399)
T ss_pred             --EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchh
Confidence              7888999999999999887776511      0000 0                                         


Q ss_pred             -----------------------------------CCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          197 -----------------------------------PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       197 -----------------------------------~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                                                         ..|.-.....++.+. |-++ .    +|++++.||.|+.||.|+ 
T Consensus       285 ~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~-w~~t-~----~l~t~c~~g~v~~wDaRt-  357 (399)
T KOG0296|consen  285 LDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK-WLNT-D----YLLTACANGKVRQWDART-  357 (399)
T ss_pred             hhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEE-EcCc-c----hheeeccCceEEeeeccc-
Confidence                                               000011122244554 5542 1    899999999999999999 


Q ss_pred             CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      ++++..+.+|...|..++++|+.++++|+|.|++.+||+..
T Consensus       358 G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  358 GQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             cceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999999999999999999999999875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-32  Score=203.07  Aligned_cols=222  Identities=17%  Similarity=0.271  Sum_probs=184.8

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ++++.+.+|+..|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|.  +.|..++.+.  ||.++++++.|.+|
T Consensus       184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~--ewvr~v~v~~--DGti~As~s~dqtl  259 (406)
T KOG0295|consen  184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS--EWVRMVRVNQ--DGTIIASCSNDQTL  259 (406)
T ss_pred             HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch--HhEEEEEecC--CeeEEEecCCCceE
Confidence            4567788999999999999999999999999999999999999999999998  4599999998  99999999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      ++|-+.++++..  .+..+.++.....+.+...........                          =+.++..+++ ++
T Consensus       260 ~vW~~~t~~~k~--~lR~hEh~vEci~wap~~~~~~i~~at--------------------------~~~~~~~~l~-s~  310 (406)
T KOG0295|consen  260 RVWVVATKQCKA--ELREHEHPVECIAWAPESSYPSISEAT--------------------------GSTNGGQVLG-SG  310 (406)
T ss_pred             EEEEeccchhhh--hhhccccceEEEEecccccCcchhhcc--------------------------CCCCCccEEE-ee
Confidence            999999987644  556666666666555443211100000                          0111223333 89


Q ss_pred             CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      +.|++|++||+.++.++.++.        +|..    .+..++ |+|.   |+ ||+++.+|+++++||+++ .+++..+
T Consensus       311 SrDktIk~wdv~tg~cL~tL~--------ghdn----wVr~~a-f~p~---Gk-yi~ScaDDktlrvwdl~~-~~cmk~~  372 (406)
T KOG0295|consen  311 SRDKTIKIWDVSTGMCLFTLV--------GHDN----WVRGVA-FSPG---GK-YILSCADDKTLRVWDLKN-LQCMKTL  372 (406)
T ss_pred             cccceEEEEeccCCeEEEEEe--------cccc----eeeeeE-EcCC---Ce-EEEEEecCCcEEEEEecc-ceeeecc
Confidence            999999999999999999999        7844    566666 9998   65 999999999999999999 9999999


Q ss_pred             cccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      ..|...|+++.|+.+..+++||+.|..+++|.-
T Consensus       373 ~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  373 EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999999999999999999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.8e-32  Score=218.43  Aligned_cols=213  Identities=20%  Similarity=0.338  Sum_probs=176.0

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      +...+||-..+++++++|||+++|||+.||.|+|||..++-|..++..|...  |+.+.|+.  .++.+++++.||+|+.
T Consensus       343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~--Vt~v~f~~--~g~~llssSLDGtVRA  418 (893)
T KOG0291|consen  343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSG--VTAVQFTA--RGNVLLSSSLDGTVRA  418 (893)
T ss_pred             eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCc--eEEEEEEe--cCCEEEEeecCCeEEe
Confidence            4566799999999999999999999999999999999999999999999955  99999999  8999999999999999


Q ss_pred             EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC
Q 022870           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (291)
                      ||+...+.-+  .++.+......+                                       ++..|.|..+.  +|+.
T Consensus       419 wDlkRYrNfR--Tft~P~p~Qfsc---------------------------------------vavD~sGelV~--AG~~  455 (893)
T KOG0291|consen  419 WDLKRYRNFR--TFTSPEPIQFSC---------------------------------------VAVDPSGELVC--AGAQ  455 (893)
T ss_pred             eeecccceee--eecCCCceeeeE---------------------------------------EEEcCCCCEEE--eecc
Confidence            9998776544  233332222222                                       55777786433  5655


Q ss_pred             cC-eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc
Q 022870          171 LS-EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (291)
Q Consensus       171 d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (291)
                      |. .|++|++++|+.+..+.        ||.    +++.++. |+|.++    .|++|+.|.+|++||+-.....+..+.
T Consensus       456 d~F~IfvWS~qTGqllDiLs--------GHE----gPVs~l~-f~~~~~----~LaS~SWDkTVRiW~if~s~~~vEtl~  518 (893)
T KOG0291|consen  456 DSFEIFVWSVQTGQLLDILS--------GHE----GPVSGLS-FSPDGS----LLASGSWDKTVRIWDIFSSSGTVETLE  518 (893)
T ss_pred             ceEEEEEEEeecCeeeehhc--------CCC----CcceeeE-EccccC----eEEeccccceEEEEEeeccCceeeeEe
Confidence            54 59999999999999888        884    4666676 999844    999999999999999976334555555


Q ss_pred             ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                       +...+..++|.|+|+.|+.+..||.|.+||++......
T Consensus       519 -i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~  556 (893)
T KOG0291|consen  519 -IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVG  556 (893)
T ss_pred             -eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeec
Confidence             57789999999999999999999999999998876553

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.3e-34  Score=210.87  Aligned_cols=202  Identities=20%  Similarity=0.391  Sum_probs=152.7

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .++++|.||++.|.|+.|..  +.+++|+.|.+|++||+++++++.++-.|...  |..+.|+.    +++++++.|.++
T Consensus       228 ~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHcea--VLhlrf~n----g~mvtcSkDrsi  299 (499)
T KOG0281|consen  228 ECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA--VLHLRFSN----GYMVTCSKDRSI  299 (499)
T ss_pred             HHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcce--eEEEEEeC----CEEEEecCCcee
Confidence            45667788888888888843  47888888888888888888888887777744  88888876    688888888888


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAV  166 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  166 (291)
                      .+||+.......     +                                      ...+.+|..  -...-+.++ ++ 
T Consensus       300 aVWdm~sps~it-----~--------------------------------------rrVLvGHrAaVNvVdfd~ky-IV-  334 (499)
T KOG0281|consen  300 AVWDMASPTDIT-----L--------------------------------------RRVLVGHRAAVNVVDFDDKY-IV-  334 (499)
T ss_pred             EEEeccCchHHH-----H--------------------------------------HHHHhhhhhheeeeccccce-EE-
Confidence            888887654211     0                                      011111111  001223343 33 


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +++.|.+|++|++.+.+.++++.        +|..    -+-+++ |.     |+ ++++|+.|.+|++||+.. +.++.
T Consensus       335 sASgDRTikvW~~st~efvRtl~--------gHkR----GIAClQ-Yr-----~r-lvVSGSSDntIRlwdi~~-G~cLR  394 (499)
T KOG0281|consen  335 SASGDRTIKVWSTSTCEFVRTLN--------GHKR----GIACLQ-YR-----DR-LVVSGSSDNTIRLWDIEC-GACLR  394 (499)
T ss_pred             EecCCceEEEEeccceeeehhhh--------cccc----cceehh-cc-----Ce-EEEecCCCceEEEEeccc-cHHHH
Confidence            66679999999999999999998        7733    344444 54     55 999999999999999999 99999


Q ss_pred             eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      .++||+.-|.++.|+..  .+++|+.||+|+|||+..+.
T Consensus       395 vLeGHEeLvRciRFd~k--rIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  395 VLEGHEELVRCIRFDNK--RIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             HHhchHHhhhheeecCc--eeeeccccceEEEEeccccc
Confidence            99999999999999877  79999999999999998754

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.1e-31  Score=189.51  Aligned_cols=213  Identities=17%  Similarity=0.223  Sum_probs=175.3

Q ss_pred             CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      ..+.+.++++...+.|+.|...|++..||+|+. -.||+||+++++  ++.++++|...  |+++.|..  +|+.+++||
T Consensus        28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kN--VtaVgF~~--dgrWMyTgs  102 (311)
T KOG0315|consen   28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKN--VTAVGFQC--DGRWMYTGS  102 (311)
T ss_pred             hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCc--eEEEEEee--cCeEEEecC
Confidence            456788899988889999999999999999886 479999998764  68899999855  99999999  999999999


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                      +||+++|||++...+.+  .+...  ....+                                       +..+|....+
T Consensus       103 eDgt~kIWdlR~~~~qR--~~~~~--spVn~---------------------------------------vvlhpnQteL  139 (311)
T KOG0315|consen  103 EDGTVKIWDLRSLSCQR--NYQHN--SPVNT---------------------------------------VVLHPNQTEL  139 (311)
T ss_pred             CCceEEEEeccCcccch--hccCC--CCcce---------------------------------------EEecCCcceE
Confidence            99999999999866544  22222  11111                                       4477887777


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC--
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP--  241 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~--  241 (291)
                      +  +|..+|.|++||+....+...+..+           ....+.++. ..|+++    +++++...|..++|++-+.  
T Consensus       140 i--s~dqsg~irvWDl~~~~c~~~liPe-----------~~~~i~sl~-v~~dgs----ml~a~nnkG~cyvW~l~~~~~  201 (311)
T KOG0315|consen  140 I--SGDQSGNIRVWDLGENSCTHELIPE-----------DDTSIQSLT-VMPDGS----MLAAANNKGNCYVWRLLNHQT  201 (311)
T ss_pred             E--eecCCCcEEEEEccCCccccccCCC-----------CCcceeeEE-EcCCCc----EEEEecCCccEEEEEccCCCc
Confidence            7  7889999999999988776666531           234566776 888844    9999999999999998651  


Q ss_pred             ---CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          242 ---GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       242 ---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                         -+|+..++.|++-+..+.++|++++||++|.|.+++||+.++.
T Consensus       202 ~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  202 ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence               2467789999999999999999999999999999999999987

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=2.1e-31  Score=217.66  Aligned_cols=214  Identities=20%  Similarity=0.331  Sum_probs=159.8

Q ss_pred             EecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeeecCCcceEEEEEeecCCC-CeEEEEe
Q 022870           13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQG   83 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~   83 (291)
                      .+.||.+.|++++|+| ++.+|++|+.|++|++||+.++       +.+..+.+|...  |.+++|+|  ++ ++|++++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~--V~~l~f~P--~~~~iLaSgs  145 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKK--VGIVSFHP--SAMNVLASAG  145 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCc--EEEEEeCc--CCCCEEEEEe
Confidence            4789999999999999 8889999999999999999764       346677888755  99999999  64 6899999


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                      .|++|++||+++++...    .+..+.....  +                                    ++|+|++..+
T Consensus       146 ~DgtVrIWDl~tg~~~~----~l~~h~~~V~--s------------------------------------la~spdG~lL  183 (493)
T PTZ00421        146 ADMVVNVWDVERGKAVE----VIKCHSDQIT--S------------------------------------LEWNLDGSLL  183 (493)
T ss_pred             CCCEEEEEECCCCeEEE----EEcCCCCceE--E------------------------------------EEEECCCCEE
Confidence            99999999999775322    2221111000  0                                    5689998654


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee---cCCCcEEEEEccC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRN  240 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~  240 (291)
                      +  +++.|+.|++||+++++.+..+.        +|....   ...+. |.|+.   ..++.+|   +.|+.|++||+++
T Consensus       184 a--tgs~Dg~IrIwD~rsg~~v~tl~--------~H~~~~---~~~~~-w~~~~---~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        184 C--TTSKDKKLNIIDPRDGTIVSSVE--------AHASAK---SQRCL-WAKRK---DLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             E--EecCCCEEEEEECCCCcEEEEEe--------cCCCCc---ceEEE-EcCCC---CeEEEEecCCCCCCeEEEEeCCC
Confidence            4  67779999999999999888877        564322   22333 88763   2144444   3589999999998


Q ss_pred             CCCceeeccccc-cceeEEEeecCCCeeEEec-CCCeEEEEEcCCCceeee
Q 022870          241 PGIPLTAMKVHL-EPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       241 ~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~~~~~~~~~  289 (291)
                      ...++.....+. ..+....|++++++|++++ .|+.|++||+.+++++..
T Consensus       247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence            556665554443 3455567899999998887 599999999999887654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.7e-33  Score=209.40  Aligned_cols=244  Identities=17%  Similarity=0.272  Sum_probs=189.0

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      ..+++|..+|+++.|++++.++++|+.+|.|++|+.+ .+.++.+..|.. +.|.+++|+|  ....|++++.||+|+||
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~-eaIRdlafSp--nDskF~t~SdDg~ikiW  207 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHA-EAIRDLAFSP--NDSKFLTCSDDGTIKIW  207 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhh-hhhheeccCC--CCceeEEecCCCeEEEE
Confidence            3467899999999999999999999999999999975 455556666653 4599999999  77999999999999999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEe
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVA  167 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  167 (291)
                      |....+...  ++..+.-....+.+.+...-.. .......+..|+.+....+.. +.+|..    +.|+|+++.++  +
T Consensus       208 df~~~kee~--vL~GHgwdVksvdWHP~kgLia-sgskDnlVKlWDprSg~cl~t-lh~HKntVl~~~f~~n~N~Ll--t  281 (464)
T KOG0284|consen  208 DFRMPKEER--VLRGHGWDVKSVDWHPTKGLIA-SGSKDNLVKLWDPRSGSCLAT-LHGHKNTVLAVKFNPNGNWLL--T  281 (464)
T ss_pred             eccCCchhh--eeccCCCCcceeccCCccceeE-EccCCceeEeecCCCcchhhh-hhhccceEEEEEEcCCCCeeE--E
Confidence            998776533  3444444444444444332222 223333667777777665543 334444    88999996555  7


Q ss_pred             cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (291)
                      ++.|..+++||+++.+.++.++        +|..    .+.++. |+|-..   .+|.+|+.||.|..|.+.. .+++..
T Consensus       282 ~skD~~~kv~DiR~mkEl~~~r--------~Hkk----dv~~~~-WhP~~~---~lftsgg~Dgsvvh~~v~~-~~p~~~  344 (464)
T KOG0284|consen  282 GSKDQSCKVFDIRTMKELFTYR--------GHKK----DVTSLT-WHPLNE---SLFTSGGSDGSVVHWVVGL-EEPLGE  344 (464)
T ss_pred             ccCCceEEEEehhHhHHHHHhh--------cchh----hheeec-cccccc---cceeeccCCCceEEEeccc-cccccC
Confidence            8899999999999888888888        7744    566666 999743   2899999999999999985 566555


Q ss_pred             c-cccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          248 M-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       248 ~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      + .+|...|++++|+|=|..|++|+.|.++++|.-.
T Consensus       345 i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  345 IPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             CCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            4 4899999999999999999999999999999764

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.1e-30  Score=214.58  Aligned_cols=217  Identities=19%  Similarity=0.227  Sum_probs=158.1

Q ss_pred             CceEEecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCCCe--------EEEEEeeecCCcceEEEEEeecCCCCe-
Q 022870            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR--------TVSSSWVHSAAHGIVSVATGPSIGLNK-   78 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~-   78 (291)
                      .++..+.+|.++|.+++|+|+ +.+|++|+.||+|+|||+.++.        .+..+.+|...  |.+++|+|  ++.. 
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~--V~sVaf~P--~g~~i  140 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK--ISIIDWNP--MNYYI  140 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc--EEEEEECC--CCCeE
Confidence            457789999999999999996 7899999999999999997542        33456777754  99999999  7665 


Q ss_pred             EEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCC
Q 022870           79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA  158 (291)
Q Consensus        79 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (291)
                      |++++.|++|++||+++++...    .+........                                       ++|+|
T Consensus       141 LaSgS~DgtIrIWDl~tg~~~~----~i~~~~~V~S---------------------------------------lswsp  177 (568)
T PTZ00420        141 MCSSGFDSFVNIWDIENEKRAF----QINMPKKLSS---------------------------------------LKWNI  177 (568)
T ss_pred             EEEEeCCCeEEEEECCCCcEEE----EEecCCcEEE---------------------------------------EEECC
Confidence            5789999999999999875322    1111111111                                       56999


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC----CcEE
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----GSIL  234 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d----g~i~  234 (291)
                      +|..+ + +++.|+.|++||+++++.+..+.        +|.......+..+..|+++   +. +|++++.|    +.|+
T Consensus       178 dG~lL-a-t~s~D~~IrIwD~Rsg~~i~tl~--------gH~g~~~s~~v~~~~fs~d---~~-~IlTtG~d~~~~R~Vk  243 (568)
T PTZ00420        178 KGNLL-S-GTCVGKHMHIIDPRKQEIASSFH--------IHDGGKNTKNIWIDGLGGD---DN-YILSTGFSKNNMREMK  243 (568)
T ss_pred             CCCEE-E-EEecCCEEEEEECCCCcEEEEEe--------cccCCceeEEEEeeeEcCC---CC-EEEEEEcCCCCccEEE
Confidence            99754 3 45568999999999999988887        7765433333322236676   33 77776655    3799


Q ss_pred             EEEccCCCCceeecccc--ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          235 VWDIRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       235 vwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      |||+++...++..+..+  .+.+......+++.++++|+.|+.|++|++..+.+
T Consensus       244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~  297 (568)
T PTZ00420        244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI  297 (568)
T ss_pred             EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence            99999756777665432  23333333355688899999999999999987653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.6e-31  Score=191.46  Aligned_cols=245  Identities=16%  Similarity=0.220  Sum_probs=189.7

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCC-eEEEEeCCCeEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVK   89 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~   89 (291)
                      ..++++|+++|..+.|.+|++.+++++.|.+|+.||.++|++.+.++.|...  |.++.-+.  -|. ++.+++.|++++
T Consensus        83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~--vNs~~p~r--rg~~lv~SgsdD~t~k  158 (338)
T KOG0265|consen   83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF--VNSLDPSR--RGPQLVCSGSDDGTLK  158 (338)
T ss_pred             eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccce--eeecCccc--cCCeEEEecCCCceEE
Confidence            5678899999999999999999999999999999999999999999999855  88888544  444 566899999999


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccCc-cceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (291)
                      +||+++....+    +... .....++.+.... ............+|+++.... ...+.+|.+    +..+|+|..++
T Consensus       159 l~D~R~k~~~~----t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~-~~~lsGh~DtIt~lsls~~gs~ll  232 (338)
T KOG0265|consen  159 LWDIRKKEAIK----TFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG-LYTLSGHADTITGLSLSRYGSFLL  232 (338)
T ss_pred             EEeecccchhh----cccc-ceeEEEEEecccccceeeccccCceeeeccccCcc-eEEeecccCceeeEEeccCCCccc
Confidence            99999876544    2211 2222222222111 122333344557787765543 334566766    88999999887


Q ss_pred             EEecCCcCeEEEEeCCCc----ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          165 AVAGEQLSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                        +.+.|.++++||++-.    +++..+.        +|.....-...... |+|++.    .+.+|+.|..+++||...
T Consensus       233 --snsMd~tvrvwd~rp~~p~~R~v~if~--------g~~hnfeknlL~cs-wsp~~~----~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  233 --SNSMDNTVRVWDVRPFAPSQRCVKIFQ--------GHIHNFEKNLLKCS-WSPNGT----KITAGSADRFVYVWDTTS  297 (338)
T ss_pred             --cccccceEEEEEecccCCCCceEEEee--------cchhhhhhhcceee-ccCCCC----ccccccccceEEEeeccc
Confidence              7888999999999853    3466666        66555555556665 999843    899999999999999987


Q ss_pred             CCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                       ...+..+.||.+.|+.++|+|...+|.+++.|.+|++=++
T Consensus       298 -r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  298 -RRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             -ccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence             8899999999999999999999999999999999987543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.3e-33  Score=205.39  Aligned_cols=242  Identities=22%  Similarity=0.357  Sum_probs=193.7

Q ss_pred             eEEecCCccceeEEEEcCCC-CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           11 VAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      +..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+.+.++..+++.|.+.  |..|++..    ..+++++.|.+|+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~--V~Gi~v~~----~~~~tvgdDKtvK  132 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGL--VRGICVTQ----TSFFTVGDDKTVK  132 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCc--eeeEEecc----cceEEecCCccee
Confidence            66789999999999999965 78999999999999999999999999999866  99999976    6789999999999


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeeccc-CccceeccCCCCceeeecccCccccccCCCCCC---cccCCCCCcEEE
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMA  165 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  165 (291)
                      .|.++..     +..++......   ..+.. .........|....+|+......+.....+...   +.|+|....+++
T Consensus       133 ~wk~~~~-----p~~tilg~s~~---~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa  204 (433)
T KOG0268|consen  133 QWKIDGP-----PLHTILGKSVY---LGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA  204 (433)
T ss_pred             eeeccCC-----cceeeeccccc---cccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence            9998763     11122211111   11111 112334455667788888777666665555554   889999999888


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                      ++++ |+.|.|||+++..++..+..             ......++ |+|.   +. .+++|++|..++.||++....++
T Consensus       205 s~~s-DrsIvLyD~R~~~Pl~KVi~-------------~mRTN~Is-wnPe---af-nF~~a~ED~nlY~~DmR~l~~p~  265 (433)
T KOG0268|consen  205 SCAS-DRSIVLYDLRQASPLKKVIL-------------TMRTNTIC-WNPE---AF-NFVAANEDHNLYTYDMRNLSRPL  265 (433)
T ss_pred             eecc-CCceEEEecccCCccceeee-------------ecccccee-cCcc---cc-ceeeccccccceehhhhhhcccc
Confidence            6666 89999999999998877652             22233444 9995   44 79999999999999999989999


Q ss_pred             eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      ...++|...|.++.|+|.|+-+++||.|.+|+||.++.+.
T Consensus       266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence            9999999999999999999999999999999999998765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.9e-31  Score=216.63  Aligned_cols=219  Identities=25%  Similarity=0.357  Sum_probs=178.3

Q ss_pred             CCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      +.+...+++++||...|++++|+|+++++++|+.|++|+|||++++++...+.+|...  |.+++|++  ++++|++++.
T Consensus       233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~--is~~~f~~--d~~~l~s~s~  308 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG--ISGLAFSP--DGNLLVSASY  308 (456)
T ss_pred             cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc--eEEEEECC--CCCEEEEcCC
Confidence            3455788999999999999999999999999999999999999999999999999955  99999999  9999999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      |+.|++||+.++...  ....+........ ...                                   +.|+|++.+++
T Consensus       309 d~~i~vwd~~~~~~~--~~~~~~~~~~~~~-~~~-----------------------------------~~fsp~~~~ll  350 (456)
T KOG0266|consen  309 DGTIRVWDLETGSKL--CLKLLSGAENSAP-VTS-----------------------------------VQFSPNGKYLL  350 (456)
T ss_pred             CccEEEEECCCCcee--eeecccCCCCCCc-eeE-----------------------------------EEECCCCcEEE
Confidence            999999999998731  0001111110000 000                                   55999998877


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                        ++..|+.+++||++.+..+..+.        +|.... ....+.. +.+.   +. ++++|+.|+.|++||+.+ +..
T Consensus       351 --~~~~d~~~~~w~l~~~~~~~~~~--------~~~~~~-~~~~~~~-~~~~---~~-~i~sg~~d~~v~~~~~~s-~~~  413 (456)
T KOG0266|consen  351 --SASLDRTLKLWDLRSGKSVGTYT--------GHSNLV-RCIFSPT-LSTG---GK-LIYSGSEDGSVYVWDSSS-GGI  413 (456)
T ss_pred             --EecCCCeEEEEEccCCcceeeec--------ccCCcc-eeEeccc-ccCC---CC-eEEEEeCCceEEEEeCCc-cch
Confidence              56778999999999999999888        665532 1222222 3433   55 999999999999999998 889


Q ss_pred             eeecccc-ccceeEEEeecCCCeeEEec--CCCeEEEEEcC
Q 022870          245 LTAMKVH-LEPVLCLSIDESCNGGISGG--ADQKIVLYNLD  282 (291)
Q Consensus       245 ~~~~~~h-~~~v~~~~~~~~~~~l~s~s--~dg~i~vw~~~  282 (291)
                      +..+.+| ...+..+.+++..+++++++  .|+.+++|..+
T Consensus       414 ~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  414 LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            9999999 89999999999999999998  79999999865

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.9e-30  Score=201.07  Aligned_cols=251  Identities=22%  Similarity=0.358  Sum_probs=190.5

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      ++++++|.++|++++|+|++++|++++.||.+++|++.+++....+..|...  +..+.|+|  +++++++++.||.|++
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~--i~~~~~~~--~~~~l~~~~~~~~i~i   77 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP--VRDVAASA--DGTYLASGSSDKTIRL   77 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc--eeEEEECC--CCCEEEEEcCCCeEEE
Confidence            4568899999999999999999999999999999999988888888888754  89999999  8789999999999999


Q ss_pred             EECCCCCCCCCCccccccceEEEEEeecccCccceecc-CCCCceeeecccCccccccCCCCCC----cccCCCCCcEEE
Q 022870           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  165 (291)
                      ||+.+++...  .+..+........+...  ....... ..+....|++...+.... +..|..    ++|+|++.. ++
T Consensus        78 ~~~~~~~~~~--~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~-l~  151 (289)
T cd00200          78 WDLETGECVR--TLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTT-LRGHTDWVNSVAFSPDGTF-VA  151 (289)
T ss_pred             EEcCcccceE--EEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEE-eccCCCcEEEEEEcCcCCE-EE
Confidence            9999764432  11222222333333322  2222222 256677777764443222 224443    889998654 33


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                       +++.|+.+++||+++++....+.        .|    ...+.++. |+|+   ++ .+++++.+|.|++||+++ ++.+
T Consensus       152 -~~~~~~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~~-~l~~~~~~~~i~i~d~~~-~~~~  212 (289)
T cd00200         152 -SSSQDGTIKLWDLRTGKCVATLT--------GH----TGEVNSVA-FSPD---GE-KLLSSSSDGTIKLWDLST-GKCL  212 (289)
T ss_pred             -EEcCCCcEEEEEccccccceeEe--------cC----ccccceEE-ECCC---cC-EEEEecCCCcEEEEECCC-Ccee
Confidence             55568999999999888877776        34    33566776 9998   43 788888899999999998 7888


Q ss_pred             eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ..+..|...+.+++|++++.++++++.||.|++|++.+++....+
T Consensus       213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~  257 (289)
T cd00200         213 GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL  257 (289)
T ss_pred             cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc
Confidence            888889999999999999888888888999999999987766543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.3e-30  Score=199.12  Aligned_cols=218  Identities=16%  Similarity=0.263  Sum_probs=174.5

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE---------------------------------
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV---------------------------------   53 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---------------------------------   53 (291)
                      ++..+.+|.-|+++|.++.|+.+|++|++++.|+++.+||..++...                                 
T Consensus       265 ~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~  344 (524)
T KOG0273|consen  265 DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVC  344 (524)
T ss_pred             CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEE
Confidence            45677888999999999999999999999999999999998665432                                 


Q ss_pred             --------EEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccce
Q 022870           54 --------SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN  125 (291)
Q Consensus        54 --------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (291)
                              .++.+|.++  |.++.|+|  .+.+|+++|.|++++||+........  -+..+........+++...    
T Consensus       345 kv~~~~P~~t~~GH~g~--V~alk~n~--tg~LLaS~SdD~TlkiWs~~~~~~~~--~l~~Hskei~t~~wsp~g~----  414 (524)
T KOG0273|consen  345 KVGEDRPVKTFIGHHGE--VNALKWNP--TGSLLASCSDDGTLKIWSMGQSNSVH--DLQAHSKEIYTIKWSPTGP----  414 (524)
T ss_pred             EecCCCcceeeecccCc--eEEEEECC--CCceEEEecCCCeeEeeecCCCcchh--hhhhhccceeeEeecCCCC----
Confidence                    233466644  99999999  89999999999999999987765543  2222222333333332221    


Q ss_pred             eccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcce
Q 022870          126 AKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRG  205 (291)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (291)
                                                  +..+|.....+++ ++.|++|++||+..+.++..|.        .|    ..
T Consensus       415 ----------------------------v~~n~~~~~~l~s-as~dstV~lwdv~~gv~i~~f~--------kH----~~  453 (524)
T KOG0273|consen  415 ----------------------------VTSNPNMNLMLAS-ASFDSTVKLWDVESGVPIHTLM--------KH----QE  453 (524)
T ss_pred             ----------------------------ccCCCcCCceEEE-eecCCeEEEEEccCCceeEeec--------cC----CC
Confidence                                        3355555555664 4559999999999999999997        56    55


Q ss_pred             eeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      ++++++ |+|+   |+ ++++|+.||.|.+|+.++ ++.++++++ .+.|..++|+.+|..|..+-.|+.+.+-|++
T Consensus       454 pVysva-fS~~---g~-ylAsGs~dg~V~iws~~~-~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  454 PVYSVA-FSPN---GR-YLASGSLDGCVHIWSTKT-GKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ceEEEE-ecCC---Cc-EEEecCCCCeeEeccccc-hheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            788887 9998   55 999999999999999999 899999987 5679999999999999999999999999986

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.6e-32  Score=206.04  Aligned_cols=205  Identities=17%  Similarity=0.302  Sum_probs=168.3

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      -+.+|..+.|.|+|+.|++|+..|.+.+|+...-.....++.|..+  |.++.|++  ++.++++|+.+|.|++|+....
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~--Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP--VRTMKWSH--NGTWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc--ceeEEEcc--CCCEEEEcCCCceEEecccchh
Confidence            3568999999999999999999999999997655444456678855  99999999  9999999999999999998865


Q ss_pred             CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  176 (291)
                      ....  ....+... ..+                                       ++|+|.+..++  +++.||+|+|
T Consensus       171 nVk~--~~ahh~ea-IRd---------------------------------------lafSpnDskF~--t~SdDg~iki  206 (464)
T KOG0284|consen  171 NVKI--IQAHHAEA-IRD---------------------------------------LAFSPNDSKFL--TCSDDGTIKI  206 (464)
T ss_pred             hhHH--hhHhhhhh-hhe---------------------------------------eccCCCCceeE--EecCCCeEEE
Confidence            4321  11111111 111                                       77999776555  6778999999


Q ss_pred             EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccccee
Q 022870          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (291)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (291)
                      ||....+....+.        +|..    .+.++. |+|...    .|++|+.|..|++||.++ +.++.++.+|+..|.
T Consensus       207 Wdf~~~kee~vL~--------GHgw----dVksvd-WHP~kg----LiasgskDnlVKlWDprS-g~cl~tlh~HKntVl  268 (464)
T KOG0284|consen  207 WDFRMPKEERVLR--------GHGW----DVKSVD-WHPTKG----LIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVL  268 (464)
T ss_pred             EeccCCchhheec--------cCCC----Ccceec-cCCccc----eeEEccCCceeEeecCCC-cchhhhhhhccceEE
Confidence            9999988877787        7744    455666 999854    899999999999999999 999999999999999


Q ss_pred             EEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          257 CLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       257 ~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      .+.|++++++|+|+|.|..++++|+++-+-+
T Consensus       269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl  299 (464)
T KOG0284|consen  269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL  299 (464)
T ss_pred             EEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence            9999999999999999999999999954433

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-31  Score=216.92  Aligned_cols=225  Identities=14%  Similarity=0.241  Sum_probs=178.5

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .++..|.+|.++|+.++|+|++.++++|+.|-.|++|+..+.+++.++.+|-.-  |..+.|++  .-..++++|.|.+|
T Consensus        42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY--VRt~~FHh--eyPWIlSASDDQTI  117 (1202)
T KOG0292|consen   42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY--VRTVFFHH--EYPWILSASDDQTI  117 (1202)
T ss_pred             hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce--eEEeeccC--CCceEEEccCCCeE
Confidence            456778999999999999999999999999999999999999999999999955  99999999  88899999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      +|||..+.+++.  +.+.+.+...+                                        ..|+|....++  ++
T Consensus       118 rIWNwqsr~~ia--vltGHnHYVMc----------------------------------------AqFhptEDlIV--Sa  153 (1202)
T KOG0292|consen  118 RIWNWQSRKCIA--VLTGHNHYVMC----------------------------------------AQFHPTEDLIV--SA  153 (1202)
T ss_pred             EEEeccCCceEE--EEecCceEEEe----------------------------------------eccCCccceEE--Ee
Confidence            999999998765  55555554443                                        34888765433  88


Q ss_pred             CCcCeEEEEeCCCcceeeEecc----c-----------------ccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQ----N-----------------SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~----~-----------------~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g  227 (291)
                      |.|.+||+||+..-+....-+.    .                 ......||..    -+.-. +|+|.-+    .|++|
T Consensus       154 SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR----GVNwa-AfhpTlp----liVSG  224 (1202)
T KOG0292|consen  154 SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR----GVNWA-AFHPTLP----LIVSG  224 (1202)
T ss_pred             cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc----ccceE-EecCCcc----eEEec
Confidence            9999999999863211100000    0                 0001114422    23334 4999755    99999


Q ss_pred             cCCCcEEEEEccC-CCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          228 YEDGSILVWDIRN-PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       228 ~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ++|..|++|.+.. ..-.+.+.++|...|.++-|+|....++|.|+|++|+|||++..+.++++
T Consensus       225 ~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  225 ADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             CCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence            9999999999874 12356678999999999999998889999999999999999999988875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=6.5e-30  Score=182.54  Aligned_cols=210  Identities=21%  Similarity=0.247  Sum_probs=165.5

Q ss_pred             CceEEecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCCC---eEEEEEe-eecCCcceEEEEEeecCCCCeEEEEe
Q 022870            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH---RTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~---~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      ..++++++|++.|..++|+|- |..||||+.|..|++|+...+   .+...+. +|+  ..|.+++|+|  .|++|++||
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk--rsVRsvAwsp--~g~~La~aS   80 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK--RSVRSVAWSP--HGRYLASAS   80 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch--heeeeeeecC--CCcEEEEee
Confidence            357889999999999999996 889999999999999998743   3444442 466  4599999999  999999999


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                      .|.++.||.-..++...  +..+..+......                                      ++|+++|++|
T Consensus        81 FD~t~~Iw~k~~~efec--v~~lEGHEnEVK~--------------------------------------Vaws~sG~~L  120 (312)
T KOG0645|consen   81 FDATVVIWKKEDGEFEC--VATLEGHENEVKC--------------------------------------VAWSASGNYL  120 (312)
T ss_pred             ccceEEEeecCCCceeE--EeeeeccccceeE--------------------------------------EEEcCCCCEE
Confidence            99999999877665422  2222222111110                                      6799999755


Q ss_pred             EEEecCCcCeEEEEeCCCc---ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          164 MAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      .  ++++|+.|-+|.+...   ++...++        .|....+..    . |+|...    +|++++.|.+|++|.-..
T Consensus       121 A--TCSRDKSVWiWe~deddEfec~aVL~--------~HtqDVK~V----~-WHPt~d----lL~S~SYDnTIk~~~~~~  181 (312)
T KOG0645|consen  121 A--TCSRDKSVWIWEIDEDDEFECIAVLQ--------EHTQDVKHV----I-WHPTED----LLFSCSYDNTIKVYRDED  181 (312)
T ss_pred             E--EeeCCCeEEEEEecCCCcEEEEeeec--------cccccccEE----E-EcCCcc----eeEEeccCCeEEEEeecC
Confidence            4  7788999999998744   3556666        676654443    3 999743    999999999999998763


Q ss_pred             C--CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          241 P--GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       241 ~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      .  -.+++++.+|...|++++|++.|..|++++.|++++||..
T Consensus       182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence            1  3578999999999999999999999999999999999984

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.9e-31  Score=187.84  Aligned_cols=216  Identities=20%  Similarity=0.300  Sum_probs=174.8

Q ss_pred             CCCCCCceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870            4 RPPPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus         4 ~~~~~~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      .+.|..|++.++.|+.+|.++.|++ ++..+++++-|++||+|+...++.+.++.+|...  |...+|+|. .+++++++
T Consensus        90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~--Iy~a~~sp~-~~nlfas~  166 (311)
T KOG0277|consen   90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC--IYQAAFSPH-IPNLFASA  166 (311)
T ss_pred             cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE--EEEEecCCC-CCCeEEEc
Confidence            4567789999999999999999999 6778889999999999999999999999999855  999999997 56899999


Q ss_pred             eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCc
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (291)
                      |.|+++++||++......  .+..+......                                        ..|+...++
T Consensus       167 Sgd~~l~lwdvr~~gk~~--~i~ah~~Eil~----------------------------------------cdw~ky~~~  204 (311)
T KOG0277|consen  167 SGDGTLRLWDVRSPGKFM--SIEAHNSEILC----------------------------------------CDWSKYNHN  204 (311)
T ss_pred             cCCceEEEEEecCCCcee--EEEeccceeEe----------------------------------------ecccccCCc
Confidence            999999999998764321  22222222222                                        237777777


Q ss_pred             EEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                      +++ +|+.|+.|+.||+++.+ ++..+.        +|.    -.+..++ |+|...+   .|++++.|-+++|||...+
T Consensus       205 vl~-Tg~vd~~vr~wDir~~r~pl~eL~--------gh~----~AVRkvk-~Sph~~~---lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  205 VLA-TGGVDNLVRGWDIRNLRTPLFELN--------GHG----LAVRKVK-FSPHHAS---LLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             EEE-ecCCCceEEEEehhhccccceeec--------CCc----eEEEEEe-cCcchhh---HhhhccccceEEecccccc
Confidence            776 67779999999999765 455554        663    3566676 9998432   8999999999999999865


Q ss_pred             CCceeeccccccceeEEEeec-CCCeeEEecCCCeEEEEEc
Q 022870          242 GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vw~~  281 (291)
                      ...+.+..-|..-|.++.|++ +..++|+++.|+.++||+.
T Consensus       268 ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  268 DSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            777888889999999999954 5668999999999999984

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.98  E-value=1.2e-31  Score=189.58  Aligned_cols=255  Identities=16%  Similarity=0.235  Sum_probs=201.5

Q ss_pred             CCCCCCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE
Q 022870            1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (291)
Q Consensus         1 m~~~~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (291)
                      |.++-..+.-+.+|.||++.|+....+.+....|+++.|=+-++||.-+|..+++++ |++.  |.+++|+.  |.++|+
T Consensus        42 mlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhi--vk~~af~~--ds~~ll  116 (334)
T KOG0278|consen   42 MLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHI--VKAVAFSQ--DSNYLL  116 (334)
T ss_pred             hhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhhe--eeeEEecc--cchhhh
Confidence            344445567789999999999999999999889999999999999999999999886 7777  99999999  999999


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCccccccc--eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--ccc
Q 022870           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDV  156 (291)
Q Consensus        81 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  156 (291)
                      +|+.++.+++||++..+..   ...+..+  ......+..... +.........++.|+.+...........+..  +.+
T Consensus       117 tgg~ekllrvfdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEv  192 (334)
T KOG0278|consen  117 TGGQEKLLRVFDLNRPKAP---PKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEV  192 (334)
T ss_pred             ccchHHHhhhhhccCCCCC---chhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEecCCCCcceee
Confidence            9999999999999877642   2233333  233333333322 2333367778899999888766654444433  899


Q ss_pred             CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (291)
                      +++|+.+.++-   .+.|++||..+...++.++.+             ..+.+.. .+|+..    ++++|++|..++.|
T Consensus       193 s~dG~ilTia~---gssV~Fwdaksf~~lKs~k~P-------------~nV~SAS-L~P~k~----~fVaGged~~~~kf  251 (334)
T KOG0278|consen  193 SQDGRILTIAY---GSSVKFWDAKSFGLLKSYKMP-------------CNVESAS-LHPKKE----FFVAGGEDFKVYKF  251 (334)
T ss_pred             ccCCCEEEEec---CceeEEeccccccceeeccCc-------------ccccccc-ccCCCc----eEEecCcceEEEEE
Confidence            99998665432   368999999999988887742             2344444 888742    89999999999999


Q ss_pred             EccCCCCceeec-cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          237 DIRNPGIPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       237 d~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      |..+ +..+..+ ++|.++|.++.|+|+|...++||.||+|++|.+..++-
T Consensus       252 Dy~T-geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  252 DYNT-GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             eccC-CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            9999 7777775 89999999999999999999999999999999876653

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.6e-30  Score=181.22  Aligned_cols=252  Identities=15%  Similarity=0.191  Sum_probs=198.2

Q ss_pred             CCCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870            4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus         4 ~~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      +|..+.+++++.||..+|..++.+.|...+++|+.|..|.+||+++|+..+.+.+|..+  |..++|+.  +...+++|+
T Consensus        45 Np~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq--VNtV~fNe--esSVv~Sgs  120 (307)
T KOG0316|consen   45 NPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ--VNTVRFNE--ESSVVASGS  120 (307)
T ss_pred             cccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce--eeEEEecC--cceEEEecc
Confidence            57778899999999999999999999999999999999999999999999999999966  99999999  889999999


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-cccCCCCCc
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPK  162 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  162 (291)
                      .|.++++||-+....  +|+..+.........+.+. .....+....+....++++.++.....+...-. ++|+++++.
T Consensus       121 fD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc  197 (307)
T KOG0316|consen  121 FDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNC  197 (307)
T ss_pred             ccceeEEEEcccCCC--CccchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCE
Confidence            999999999998765  4455554433333322222 223344555677788888877655443322222 999999988


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                      .+  .++.|+++++.|-.+++.+..++        +|...  ..-...+ ++...   . .+++|++||.|++||+.+ .
T Consensus       198 ~L--a~~l~stlrLlDk~tGklL~sYk--------Ghkn~--eykldc~-l~qsd---t-hV~sgSEDG~Vy~wdLvd-~  259 (307)
T KOG0316|consen  198 SL--ASSLDSTLRLLDKETGKLLKSYK--------GHKNM--EYKLDCC-LNQSD---T-HVFSGSEDGKVYFWDLVD-E  259 (307)
T ss_pred             EE--EeeccceeeecccchhHHHHHhc--------ccccc--eeeeeee-ecccc---e-eEEeccCCceEEEEEecc-c
Confidence            77  56779999999999999999998        88653  2333333 66542   2 899999999999999998 7


Q ss_pred             Cceeeccccccc-eeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          243 IPLTAMKVHLEP-VLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       243 ~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      ..+..+..|... |.+++++|....|+++.. +.+..|--
T Consensus       260 ~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~  298 (307)
T KOG0316|consen  260 TQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQ  298 (307)
T ss_pred             eeeeeeccCCceeEEeeecccCccceeEecC-Cceeceee
Confidence            888888888777 899999998888888764 44666643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.2e-30  Score=188.64  Aligned_cols=218  Identities=17%  Similarity=0.260  Sum_probs=172.4

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC------------C------eEEEEEeeecCCcceEEEEEee
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------H------RTVSSSWVHSAAHGIVSVATGP   72 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~------------~------~~~~~~~~~~~~~~v~~~~~~~   72 (291)
                      ...+..|++++++.+|++||.++|||+.|..|+|.|++.            +      -.++++-.|..  +|.++.|+|
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d--evn~l~FHP  182 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD--EVNDLDFHP  182 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC--cccceeecc
Confidence            456778999999999999999999999999999999872            0      24566666774  499999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC
Q 022870           73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS  152 (291)
Q Consensus        73 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (291)
                        ....|++|+.|++|+++|+......+. ...+.......+                                      
T Consensus       183 --re~ILiS~srD~tvKlFDfsK~saKrA-~K~~qd~~~vrs--------------------------------------  221 (430)
T KOG0640|consen  183 --RETILISGSRDNTVKLFDFSKTSAKRA-FKVFQDTEPVRS--------------------------------------  221 (430)
T ss_pred             --hhheEEeccCCCeEEEEecccHHHHHH-HHHhhccceeee--------------------------------------
Confidence              778999999999999999986543220 001111111111                                      


Q ss_pred             CcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870          153 KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (291)
Q Consensus       153 ~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (291)
                       +.|+|.|+.++  .|..-..+++||+++.++...-..         ...+.+.+.++. |++.   |. +.++|+.||.
T Consensus       222 -iSfHPsGefll--vgTdHp~~rlYdv~T~QcfvsanP---------d~qht~ai~~V~-Ys~t---~~-lYvTaSkDG~  284 (430)
T KOG0640|consen  222 -ISFHPSGEFLL--VGTDHPTLRLYDVNTYQCFVSANP---------DDQHTGAITQVR-YSST---GS-LYVTASKDGA  284 (430)
T ss_pred             -EeecCCCceEE--EecCCCceeEEeccceeEeeecCc---------ccccccceeEEE-ecCC---cc-EEEEeccCCc
Confidence             56999999877  466678999999999888665441         122466788887 9998   44 8999999999


Q ss_pred             EEEEEccCCCCceeecc-ccc-cceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          233 ILVWDIRNPGIPLTAMK-VHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       233 i~vwd~~~~~~~~~~~~-~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      |++||--+ .+++.++. +|. ..|.+..|..+++++.+.+.|..+++|++.+++.+..
T Consensus       285 IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  285 IKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             EEeecccc-HHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence            99999887 78888775 564 4799999999999999999999999999999998764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.3e-30  Score=184.00  Aligned_cols=251  Identities=17%  Similarity=0.232  Sum_probs=191.8

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEE--eeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      +.+++|.+.|.+++|+-+|..|++|+.|+++++|+++..+....+  .+|.  +.|-.++|.|. ..++|++++.|.+|+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~--~svdql~w~~~-~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT--DSVDQLCWDPK-HPDLFATASGDKTIR   90 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC--cchhhheeCCC-CCcceEEecCCceEE
Confidence            567899999999999999999999999999999999877655544  4555  44999999986 458999999999999


Q ss_pred             EEECCCCCCCCCCccccccc-eEEEEEeecccCccceeccCCCCceeeecccCcccccc-CCCCCC-cccCCCCCcEEEE
Q 022870           90 CWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SLCDSK-DDVPAEGPKYMAV  166 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~  166 (291)
                      +||++.+++..    .+... ......+++..... .+......+..++.+..+..... +..... ++|+-++..++++
T Consensus        91 ~wd~r~~k~~~----~i~~~~eni~i~wsp~g~~~-~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   91 IWDIRSGKCTA----RIETKGENINITWSPDGEYI-AVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             EEEeccCcEEE----EeeccCcceEEEEcCCCCEE-EEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEe
Confidence            99999987644    22221 22222233332221 12223334445555555433332 222222 8888777666665


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +|  .|.|.|......+++..++        +|+    ..|+++. |+|+   |+ ++|+|+.|-.+.+||+.. --+++
T Consensus       166 ~G--lG~v~ILsypsLkpv~si~--------AH~----snCicI~-f~p~---Gr-yfA~GsADAlvSLWD~~E-LiC~R  225 (313)
T KOG1407|consen  166 NG--LGCVEILSYPSLKPVQSIK--------AHP----SNCICIE-FDPD---GR-YFATGSADALVSLWDVDE-LICER  225 (313)
T ss_pred             cC--CceEEEEeccccccccccc--------cCC----cceEEEE-ECCC---Cc-eEeeccccceeeccChhH-hhhhe
Confidence            55  4899999999999999998        674    5788898 9998   66 999999999999999997 78888


Q ss_pred             eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      .+.-+.-+|..+.|+.+|++||++|+|..|-|=++++|..+..|
T Consensus       226 ~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI  269 (313)
T KOG1407|consen  226 CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI  269 (313)
T ss_pred             eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe
Confidence            99889999999999999999999999999999999988877654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=9.4e-30  Score=181.48  Aligned_cols=214  Identities=21%  Similarity=0.287  Sum_probs=177.5

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      .|+||+.+++.+.|+.+|.+|++++.|.+..||-..+|+.+.++.+|.+.  |+|+....  +...+++|+.|.++++||
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGa--vW~~Did~--~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGA--VWCCDIDW--DSKHLITGSADQTAKLWD   80 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCce--EEEEEecC--CcceeeeccccceeEEEE
Confidence            47899999999999999999999999999999998899999999999977  99999998  889999999999999999


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec---C
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG---E  169 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~  169 (291)
                      +++++++.    .++.......                                       +.|+++|..+++++-   +
T Consensus        81 v~tGk~la----~~k~~~~Vk~---------------------------------------~~F~~~gn~~l~~tD~~mg  117 (327)
T KOG0643|consen   81 VETGKQLA----TWKTNSPVKR---------------------------------------VDFSFGGNLILASTDKQMG  117 (327)
T ss_pred             cCCCcEEE----EeecCCeeEE---------------------------------------EeeccCCcEEEEEehhhcC
Confidence            99998744    3333322211                                       448888877666431   1


Q ss_pred             CcCeEEEEeCC-------CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          170 QLSEVEIWDLN-------TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       170 ~d~~i~~wd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                      ..+.|.++|++       ..++...+.        .+    ...++... |.|.   ++ +|++|.+||.|..||++++.
T Consensus       118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~--------t~----~skit~a~-Wg~l---~~-~ii~Ghe~G~is~~da~~g~  180 (327)
T KOG0643|consen  118 YTCFVSVFDIRDDSSDIDSEEPYLKIP--------TP----DSKITSAL-WGPL---GE-TIIAGHEDGSISIYDARTGK  180 (327)
T ss_pred             cceEEEEEEccCChhhhcccCceEEec--------CC----ccceeeee-eccc---CC-EEEEecCCCcEEEEEcccCc
Confidence            24779999998       444555555        22    23445554 9998   44 99999999999999999966


Q ss_pred             CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +.+.+-+.|...|+.|+++++..+++++|.|.+-++||+++-+++++.
T Consensus       181 ~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty  228 (327)
T KOG0643|consen  181 ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY  228 (327)
T ss_pred             eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence            777888899999999999999999999999999999999998887653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.2e-29  Score=179.04  Aligned_cols=237  Identities=18%  Similarity=0.218  Sum_probs=175.2

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC--eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~   93 (291)
                      +|+..|++++|+|.|++|++|+.|.++.||.-..+  +++..+++|..+  |.|++|++  +|++|++++.|++|-||.+
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE--VK~Vaws~--sG~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE--VKCVAWSA--SGNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc--eeEEEEcC--CCCEEEEeeCCCeEEEEEe
Confidence            69999999999999999999999999999986543  788999999966  99999999  9999999999999999998


Q ss_pred             CCCCC-CCCCccccccceEEEEEeecccCccceeccCCCCceeee-c-ccCccccccCCCCCC----cccCCCCCcEEEE
Q 022870           94 ENGGL-SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYE-R-EVGETVDTDSLCDSK----DDVPAEGPKYMAV  166 (291)
Q Consensus        94 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  166 (291)
                      ..... ....+++.+........+.+...-.....++. .+..|. . .........+.+|..    ++|++.|.++.  
T Consensus       135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn-TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~--  211 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN-TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV--  211 (312)
T ss_pred             cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC-eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE--
Confidence            74432 11123444455555555555443333333333 334443 3 333455667777775    89999998766  


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC-CCce
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIPL  245 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~~~~  245 (291)
                      +++.|++++||-..+.     +.           ......++.+. |. +   |  .|++++.|+.|++|..... ..+.
T Consensus       212 s~sdD~tv~Iw~~~~~-----~~-----------~~~sr~~Y~v~-W~-~---~--~IaS~ggD~~i~lf~~s~~~d~p~  268 (312)
T KOG0645|consen  212 SCSDDGTVSIWRLYTD-----LS-----------GMHSRALYDVP-WD-N---G--VIASGGGDDAIRLFKESDSPDEPS  268 (312)
T ss_pred             EecCCcceEeeeeccC-----cc-----------hhcccceEeee-ec-c---c--ceEeccCCCEEEEEEecCCCCCch
Confidence            7888999999986621     11           11234566665 87 3   3  7999999999999976541 1222


Q ss_pred             -----eeccccccceeEEEeecC-CCeeEEecCCCeEEEEEcC
Q 022870          246 -----TAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       246 -----~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~  282 (291)
                           ..-..|...|++++|+|. .++|++|+.||.|++|.+.
T Consensus       269 ~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  269 WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence                 234578889999999994 6789999999999999875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.5e-29  Score=203.60  Aligned_cols=211  Identities=24%  Similarity=0.316  Sum_probs=171.6

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCC-CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .+++.+.--..+|..++|+..|.+||.|+.. |.+.||+..+..-+...++|...  +.+++++|  ||.++++|+.||.
T Consensus       298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~--i~~l~YSp--Dgq~iaTG~eDgK  373 (893)
T KOG0291|consen  298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDR--ITSLAYSP--DGQLIATGAEDGK  373 (893)
T ss_pred             eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccc--eeeEEECC--CCcEEEeccCCCc
Confidence            4567777667889999999999999998765 89999999998888888899866  99999999  9999999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (291)
                      |++||...+-+..    ++..+......                                      +.|+..|+.++  +
T Consensus       374 VKvWn~~SgfC~v----TFteHts~Vt~--------------------------------------v~f~~~g~~ll--s  409 (893)
T KOG0291|consen  374 VKVWNTQSGFCFV----TFTEHTSGVTA--------------------------------------VQFTARGNVLL--S  409 (893)
T ss_pred             EEEEeccCceEEE----EeccCCCceEE--------------------------------------EEEEecCCEEE--E
Confidence            9999999876633    33322221111                                      44777776555  7


Q ss_pred             cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC-cEEEEEccCCCCcee
Q 022870          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRNPGIPLT  246 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg-~i~vwd~~~~~~~~~  246 (291)
                      .+.||+|+.||+...+..+++..+           ......+++ ..|.   |. .+++|+.|. .|.||++++ ++.+.
T Consensus       410 sSLDGtVRAwDlkRYrNfRTft~P-----------~p~Qfscva-vD~s---Ge-lV~AG~~d~F~IfvWS~qT-GqllD  472 (893)
T KOG0291|consen  410 SSLDGTVRAWDLKRYRNFRTFTSP-----------EPIQFSCVA-VDPS---GE-LVCAGAQDSFEIFVWSVQT-GQLLD  472 (893)
T ss_pred             eecCCeEEeeeecccceeeeecCC-----------CceeeeEEE-EcCC---CC-EEEeeccceEEEEEEEeec-Ceeee
Confidence            888999999999999999888731           222333443 6665   55 777887775 699999999 99999


Q ss_pred             eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      .+.||+++|.+++|+|.+..|+|+|.|.+||+||+=..
T Consensus       473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             hhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence            99999999999999999999999999999999997543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.6e-29  Score=205.71  Aligned_cols=219  Identities=17%  Similarity=0.266  Sum_probs=171.6

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      -.+|++.|.||.+.|..|.|+.++ +|++++.|.+||||++...+|+..|. |.  +.|+|++|+|. |.++|++|+.||
T Consensus       358 ~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn--dfVTcVaFnPv-DDryFiSGSLD~  432 (712)
T KOG0283|consen  358 SEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HN--DFVTCVAFNPV-DDRYFISGSLDG  432 (712)
T ss_pred             cccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cC--CeeEEEEeccc-CCCcEeeccccc
Confidence            347899999999999999999887 99999999999999999999999886 66  44999999998 559999999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (291)
                      .|+||++...+...  -..++  .....                                       ++|.|+|+..+  
T Consensus       433 KvRiWsI~d~~Vv~--W~Dl~--~lITA---------------------------------------vcy~PdGk~av--  467 (712)
T KOG0283|consen  433 KVRLWSISDKKVVD--WNDLR--DLITA---------------------------------------VCYSPDGKGAV--  467 (712)
T ss_pred             ceEEeecCcCeeEe--ehhhh--hhhee---------------------------------------EEeccCCceEE--
Confidence            99999998776432  00111  11111                                       66999998766  


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      .|+.+|.+++|+++..+....+....   ..+. ......++.++ |.|..++   .+++.+.|..|||||.++ ..++.
T Consensus       468 IGt~~G~C~fY~t~~lk~~~~~~I~~---~~~K-k~~~~rITG~Q-~~p~~~~---~vLVTSnDSrIRI~d~~~-~~lv~  538 (712)
T KOG0283|consen  468 IGTFNGYCRFYDTEGLKLVSDFHIRL---HNKK-KKQGKRITGLQ-FFPGDPD---EVLVTSNDSRIRIYDGRD-KDLVH  538 (712)
T ss_pred             EEEeccEEEEEEccCCeEEEeeeEee---ccCc-cccCceeeeeE-ecCCCCC---eEEEecCCCceEEEeccc-hhhhh
Confidence            68889999999999887766554210   0011 11223688998 8887543   588888999999999998 88888


Q ss_pred             ecccccc--ceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          247 AMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       247 ~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      .|+|+..  .=....|+.+|++|+++++|..|++|++...
T Consensus       539 KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  539 KFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             hhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            9987643  2345688889999999999999999998543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=7.8e-30  Score=188.94  Aligned_cols=215  Identities=21%  Similarity=0.362  Sum_probs=177.6

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      .+++..++.||...|..+++|+...|+++++.|+.|+.||++..+.++.+.+|-+.  |.|++.+|  .-+.|++|+.|.
T Consensus       182 tg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~--V~~L~lhP--Tldvl~t~grDs  257 (460)
T KOG0285|consen  182 TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG--VYCLDLHP--TLDVLVTGGRDS  257 (460)
T ss_pred             cCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccce--eEEEeccc--cceeEEecCCcc
Confidence            45677899999999999999999999999999999999999999999999999855  99999999  668999999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (291)
                      ++++||+++...+.  .+..+..+...                                        +.+.|.++.++  
T Consensus       258 t~RvWDiRtr~~V~--~l~GH~~~V~~----------------------------------------V~~~~~dpqvi--  293 (460)
T KOG0285|consen  258 TIRVWDIRTRASVH--VLSGHTNPVAS----------------------------------------VMCQPTDPQVI--  293 (460)
T ss_pred             eEEEeeecccceEE--EecCCCCccee----------------------------------------EEeecCCCceE--
Confidence            99999999875433  22222222221                                        22555566666  


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +|+.|++|++||++.++...++.        .|    +..+.+++ .+|...    .+++++.| .|+-|++.. +..++
T Consensus       294 t~S~D~tvrlWDl~agkt~~tlt--------~h----kksvral~-lhP~e~----~fASas~d-nik~w~~p~-g~f~~  354 (460)
T KOG0285|consen  294 TGSHDSTVRLWDLRAGKTMITLT--------HH----KKSVRALC-LHPKEN----LFASASPD-NIKQWKLPE-GEFLQ  354 (460)
T ss_pred             EecCCceEEEeeeccCceeEeee--------cc----cceeeEEe-cCCchh----hhhccCCc-cceeccCCc-cchhh
Confidence            89999999999999999888887        45    44566665 898743    67777776 599999998 88888


Q ss_pred             eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .+.+|.+.|++++...|+ ++++|+++|.+.+||.+++-..+.
T Consensus       355 nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~  396 (460)
T KOG0285|consen  355 NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQR  396 (460)
T ss_pred             ccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccc
Confidence            899999999999998876 689999999999999998866543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-29  Score=178.60  Aligned_cols=207  Identities=17%  Similarity=0.278  Sum_probs=163.0

Q ss_pred             CccceeEEEEcC-CCCEEEEecCCCeEEEEeCCC-CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870           17 HRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        17 h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~   94 (291)
                      -.+.+..++|++ ..+.+++++.||+++|||+.. .+++..++.|..+  |.++.|++. ....++++|.|++|++|+..
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E--V~Svdwn~~-~r~~~ltsSWD~TiKLW~~~  135 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE--VYSVDWNTV-RRRIFLTSSWDGTIKLWDPN  135 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhh--eEEeccccc-cceeEEeeccCCceEeecCC
Confidence            467899999999 456889999999999999653 4678888999866  999999986 44678888999999999998


Q ss_pred             CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeE
Q 022870           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (291)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  174 (291)
                      .++.+.    +...+..  +...                                    ..|+|...+++++ .+.|+.+
T Consensus       136 r~~Sv~----Tf~gh~~--~Iy~------------------------------------a~~sp~~~nlfas-~Sgd~~l  172 (311)
T KOG0277|consen  136 RPNSVQ----TFNGHNS--CIYQ------------------------------------AAFSPHIPNLFAS-ASGDGTL  172 (311)
T ss_pred             CCcceE----eecCCcc--EEEE------------------------------------EecCCCCCCeEEE-ccCCceE
Confidence            776543    3322211  1111                                    4588988898885 5569999


Q ss_pred             EEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccc
Q 022870          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (291)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~  254 (291)
                      ++||++..-....++        .|.    ..+.++. |+..   ..+.+++|+.|+.|+.||+++...++.++.+|.-.
T Consensus       173 ~lwdvr~~gk~~~i~--------ah~----~Eil~cd-w~ky---~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A  236 (311)
T KOG0277|consen  173 RLWDVRSPGKFMSIE--------AHN----SEILCCD-WSKY---NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA  236 (311)
T ss_pred             EEEEecCCCceeEEE--------ecc----ceeEeec-cccc---CCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence            999998765444466        553    3455665 7765   22399999999999999999989999999999999


Q ss_pred             eeEEEeecC-CCeeEEecCCCeEEEEEcCCCc
Q 022870          255 VLCLSIDES-CNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       255 v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      |..+.|+|. ..+|+|++.|-++||||...+.
T Consensus       237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  237 VRKVKFSPHHASLLASASYDMTVRIWDPERQD  268 (311)
T ss_pred             EEEEecCcchhhHhhhccccceEEecccccch
Confidence            999999885 3478999999999999998543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=9.9e-31  Score=193.22  Aligned_cols=197  Identities=17%  Similarity=0.339  Sum_probs=157.2

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      ..+.|+|+++.  ...+++|..|++|+|||.++-.+++.+.+|.+.  |.|+.|..    +.+++|+.|.+|++||++++
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGS--VLCLqyd~----rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGS--VLCLQYDE----RVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCc--EEeeeccc----eEEEecCCCceEEEEeccCC
Confidence            35679999994  458999999999999999999999999999976  99999976    79999999999999999999


Q ss_pred             CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  176 (291)
                      +.+.  .+..+.......                                        .|+   +.+++ +++.|.++.+
T Consensus       268 e~l~--tlihHceaVLhl----------------------------------------rf~---ng~mv-tcSkDrsiaV  301 (499)
T KOG0281|consen  268 EPLN--TLIHHCEAVLHL----------------------------------------RFS---NGYMV-TCSKDRSIAV  301 (499)
T ss_pred             chhh--HHhhhcceeEEE----------------------------------------EEe---CCEEE-EecCCceeEE
Confidence            8654  222222222211                                        122   22333 7888999999


Q ss_pred             EeCCCccee---eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc
Q 022870          177 WDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE  253 (291)
Q Consensus       177 wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~  253 (291)
                      ||+.+...+   ..+.        ||    ...+..+. |...      ++++++.|.+|++|++.+ ...+..+.+|..
T Consensus       302 Wdm~sps~it~rrVLv--------GH----rAaVNvVd-fd~k------yIVsASgDRTikvW~~st-~efvRtl~gHkR  361 (499)
T KOG0281|consen  302 WDMASPTDITLRRVLV--------GH----RAAVNVVD-FDDK------YIVSASGDRTIKVWSTST-CEFVRTLNGHKR  361 (499)
T ss_pred             EeccCchHHHHHHHHh--------hh----hhheeeec-cccc------eEEEecCCceEEEEeccc-eeeehhhhcccc
Confidence            999876532   2233        66    44555565 7643      999999999999999999 999999999999


Q ss_pred             ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .|.++.+..  +++++||.|.+|++||++.|++++.
T Consensus       362 GIAClQYr~--rlvVSGSSDntIRlwdi~~G~cLRv  395 (499)
T KOG0281|consen  362 GIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRV  395 (499)
T ss_pred             cceehhccC--eEEEecCCCceEEEEeccccHHHHH
Confidence            999987754  4999999999999999999998764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=4.1e-28  Score=188.92  Aligned_cols=243  Identities=25%  Similarity=0.389  Sum_probs=184.9

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +....+.+|...+..+.|+|+++++++++.||.|++||+.+++.+..+..|..  .|.++.|++  ++.++++++.|+.|
T Consensus        42 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~--~~~~~~~~~~~~~i  117 (289)
T cd00200          42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS--YVSSVAFSP--DGRILSSSSRDKTI  117 (289)
T ss_pred             CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC--cEEEEEEcC--CCCEEEEecCCCeE
Confidence            45677889999999999999999999999999999999998888888887774  499999999  77788888889999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceecc-CCCCceeeecccCccccccCCCCCC----cccCCCCCcE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (291)
                      .+||+++.+...  .+..+........+...  ....... ..+...+|++........ +..+..    ++|+|++..+
T Consensus       118 ~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l  192 (289)
T cd00200         118 KVWDVETGKCLT--TLRGHTDWVNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVAT-LTGHTGEVNSVAFSPDGEKL  192 (289)
T ss_pred             EEEECCCcEEEE--EeccCCCcEEEEEEcCc--CCEEEEEcCCCcEEEEEcccccccee-EecCccccceEEECCCcCEE
Confidence            999998665432  11112222333333332  2222222 256677777765443322 223332    8899999766


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      ++  ++.|+.+++||++.++.+..+.        .|    ...+.++. |+|+   +. ++++++.||.|++||+.+ ++
T Consensus       193 ~~--~~~~~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~~-~~~~~~~~~~i~i~~~~~-~~  252 (289)
T cd00200         193 LS--SSSDGTIKLWDLSTGKCLGTLR--------GH----ENGVNSVA-FSPD---GY-LLASGSEDGTIRVWDLRT-GE  252 (289)
T ss_pred             EE--ecCCCcEEEEECCCCceecchh--------hc----CCceEEEE-EcCC---Cc-EEEEEcCCCcEEEEEcCC-ce
Confidence            64  3348999999999888877775        33    33667776 9987   33 788888899999999998 78


Q ss_pred             ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      +...+..|...|.+++|++++.+|++++.||.|++|+
T Consensus       253 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         253 CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            8888889999999999999999999999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=3.2e-28  Score=213.35  Aligned_cols=246  Identities=14%  Similarity=0.211  Sum_probs=176.9

Q ss_pred             ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC----e----EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----R----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      +..|.+.|++++|+|+|++||+|+.|+.|+|||....    .    ....+.. .  ..|.+++|++. ++.+|++++.|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~--~~v~~l~~~~~-~~~~las~~~D  554 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-R--SKLSGICWNSY-IKSQVASSNFE  554 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-c--CceeeEEeccC-CCCEEEEEeCC
Confidence            4458999999999999999999999999999997531    1    1222332 2  45999999873 46899999999


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC---cccCCCCCc
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPK  162 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  162 (291)
                      |+|++||+.+++...  .+..+........+.+............+...+|++......... ..+..   +.|++....
T Consensus       555 g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-~~~~~v~~v~~~~~~g~  631 (793)
T PLN00181        555 GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-KTKANICCVQFPSESGR  631 (793)
T ss_pred             CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-ecCCCeEEEEEeCCCCC
Confidence            999999998876533  222333334444444332233344555667888888765543222 22222   667554334


Q ss_pred             EEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                      .++ +|+.|+.|++||+++.+ ....+.        +|.    ..+.++. |.+    +. +|++++.|+.|++||++..
T Consensus       632 ~la-tgs~dg~I~iwD~~~~~~~~~~~~--------~h~----~~V~~v~-f~~----~~-~lvs~s~D~~ikiWd~~~~  692 (793)
T PLN00181        632 SLA-FGSADHKVYYYDLRNPKLPLCTMI--------GHS----KTVSYVR-FVD----SS-TLVSSSTDNTLKLWDLSMS  692 (793)
T ss_pred             EEE-EEeCCCeEEEEECCCCCccceEec--------CCC----CCEEEEE-EeC----CC-EEEEEECCCEEEEEeCCCC
Confidence            444 67779999999998765 344554        563    3566776 863    33 8999999999999999742


Q ss_pred             -----CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          242 -----GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       242 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                           ..++..+.+|...+..++|++++.+|++|+.|+.|++|+.....
T Consensus       693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence                 35778899999999999999999999999999999999976543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=2.2e-29  Score=206.20  Aligned_cols=211  Identities=24%  Similarity=0.351  Sum_probs=173.2

Q ss_pred             CCCceEE-ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870            7 PPDPVAV-LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus         7 ~~~~~~~-l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      +...+.. +.||.+.|.+++|..-+.+|++|+.|.++++||..+|++..++.+|...  |.++...+    ..+++|+.|
T Consensus       237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st--v~~~~~~~----~~~~sgs~D  310 (537)
T KOG0274|consen  237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS--VRCLTIDP----FLLVSGSRD  310 (537)
T ss_pred             cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce--EEEEEccC----ceEeeccCC
Confidence            3445555 9999999999999876779999999999999999999999999999865  99998876    788899999


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                      .+|++|+++++..+.  ++..+..++...                                          .-++..++ 
T Consensus       311 ~tVkVW~v~n~~~l~--l~~~h~~~V~~v------------------------------------------~~~~~~lv-  345 (537)
T KOG0274|consen  311 NTVKVWDVTNGACLN--LLRGHTGPVNCV------------------------------------------QLDEPLLV-  345 (537)
T ss_pred             ceEEEEeccCcceEE--EeccccccEEEE------------------------------------------EecCCEEE-
Confidence            999999999887654  222222222211                                          12234444 


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC-Cc
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IP  244 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-~~  244 (291)
                       +|+.|++|++||+++++++..+.        +|    .+.+.++. +.+.    . .+++|+.|+.|++||+++ . ++
T Consensus       346 -sgs~d~~v~VW~~~~~~cl~sl~--------gH----~~~V~sl~-~~~~----~-~~~Sgs~D~~IkvWdl~~-~~~c  405 (537)
T KOG0274|consen  346 -SGSYDGTVKVWDPRTGKCLKSLS--------GH----TGRVYSLI-VDSE----N-RLLSGSLDTTIKVWDLRT-KRKC  405 (537)
T ss_pred             -EEecCceEEEEEhhhceeeeeec--------CC----cceEEEEE-ecCc----c-eEEeeeeccceEeecCCc-hhhh
Confidence             78889999999999999999999        77    44666665 7652    1 899999999999999998 6 89


Q ss_pred             eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +..+.+|.+-|.++.+..+  .|++++.|++|++||.+++++++++
T Consensus       406 ~~tl~~h~~~v~~l~~~~~--~Lvs~~aD~~Ik~WD~~~~~~~~~~  449 (537)
T KOG0274|consen  406 IHTLQGHTSLVSSLLLRDN--FLVSSSADGTIKLWDAEEGECLRTL  449 (537)
T ss_pred             hhhhcCCcccccccccccc--eeEeccccccEEEeecccCceeeee
Confidence            9999999999988777665  8999999999999999999998764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1e-29  Score=206.92  Aligned_cols=210  Identities=17%  Similarity=0.293  Sum_probs=165.2

Q ss_pred             EEec-CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC----------------------------------------
Q 022870           12 AVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----------------------------------------   50 (291)
Q Consensus        12 ~~l~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----------------------------------------   50 (291)
                      +.+. +|.+.|+++.|++||+|||+||.||.|+||.+...                                        
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3455 89999999999999999999999999999986540                                        


Q ss_pred             --------------------eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccce
Q 022870           51 --------------------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (291)
Q Consensus        51 --------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  110 (291)
                                          +++..+.+|...  |..+.|+.  + ++|++++.|.+|++|++....++.    .+....
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~D--ILDlSWSK--n-~fLLSSSMDKTVRLWh~~~~~CL~----~F~Hnd  410 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTAD--ILDLSWSK--N-NFLLSSSMDKTVRLWHPGRKECLK----VFSHND  410 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchh--heeccccc--C-CeeEeccccccEEeecCCCcceee----EEecCC
Confidence                                012334478755  99999998  5 899999999999999999887755    455555


Q ss_pred             EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecc
Q 022870          111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (291)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~  190 (291)
                      +..|                                       ++|+|-++++|+ +|+.|+.|+||++...+.+.... 
T Consensus       411 fVTc---------------------------------------VaFnPvDDryFi-SGSLD~KvRiWsI~d~~Vv~W~D-  449 (712)
T KOG0283|consen  411 FVTC---------------------------------------VAFNPVDDRYFI-SGSLDGKVRLWSISDKKVVDWND-  449 (712)
T ss_pred             eeEE---------------------------------------EEecccCCCcEe-ecccccceEEeecCcCeeEeehh-
Confidence            5555                                       779998877776 89999999999999877665554 


Q ss_pred             cccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc--c------ccceeEEEeec
Q 022870          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV--H------LEPVLCLSIDE  262 (291)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--h------~~~v~~~~~~~  262 (291)
                                  ...++++++ |.|+   |+ +.+.|+.+|.+++|+... .+......-  |      ...|+++.|.|
T Consensus       450 ------------l~~lITAvc-y~Pd---Gk-~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p  511 (712)
T KOG0283|consen  450 ------------LRDLITAVC-YSPD---GK-GAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNKKKKQGKRITGLQFFP  511 (712)
T ss_pred             ------------hhhhheeEE-eccC---Cc-eEEEEEeccEEEEEEccC-CeEEEeeeEeeccCccccCceeeeeEecC
Confidence                        356889997 9999   55 999999999999999986 444433321  1      22799999964


Q ss_pred             CCC-eeEEecCCCeEEEEEcCCCceeee
Q 022870          263 SCN-GGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       263 ~~~-~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      ... .|+..+.|..|||+|.++.+++++
T Consensus       512 ~~~~~vLVTSnDSrIRI~d~~~~~lv~K  539 (712)
T KOG0283|consen  512 GDPDEVLVTSNDSRIRIYDGRDKDLVHK  539 (712)
T ss_pred             CCCCeEEEecCCCceEEEeccchhhhhh
Confidence            322 466667899999999988777654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=9.8e-29  Score=184.21  Aligned_cols=257  Identities=17%  Similarity=0.163  Sum_probs=183.2

Q ss_pred             CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC-CCCeEEEEeC
Q 022870            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGR   84 (291)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~   84 (291)
                      +||+++..+. |.+-|.++...  +..+++|++||.+++||. .|+....+.+|.++  |.+++|.-.+ ....|++++.
T Consensus        94 ~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~--ik~v~~v~~n~~~~~fvsas~  167 (423)
T KOG0313|consen   94 TAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGP--IKSVAWVIKNSSSCLFVSASM  167 (423)
T ss_pred             CCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcc--eeeeEEEecCCccceEEEecC
Confidence            4557777776 89999999987  569999999999999995 69999999999955  9988886521 2236999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccc-eeccCCCCceeeecc------------------------
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYERE------------------------  139 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------------  139 (291)
                      |.++++|.++.+............+......++...+... ....-...+.+|+..                        
T Consensus       168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~  247 (423)
T KOG0313|consen  168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG  247 (423)
T ss_pred             CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence            9999999998776544333332233333333332222211 112222333344310                        


Q ss_pred             cCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecC
Q 022870          140 VGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (291)
Q Consensus       140 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  215 (291)
                      ..+.+...+.+|..    +.|++.+ .++  +++.|.+|+.||+.++....++..             .....++. ++|
T Consensus       248 ~~r~P~vtl~GHt~~Vs~V~w~d~~-v~y--S~SwDHTIk~WDletg~~~~~~~~-------------~ksl~~i~-~~~  310 (423)
T KOG0313|consen  248 GTRTPLVTLEGHTEPVSSVVWSDAT-VIY--SVSWDHTIKVWDLETGGLKSTLTT-------------NKSLNCIS-YSP  310 (423)
T ss_pred             cccCceEEecccccceeeEEEcCCC-ceE--eecccceEEEEEeecccceeeeec-------------CcceeEee-ccc
Confidence            11233445567766    7777733 333  788999999999999998888772             33566676 888


Q ss_pred             CCCCCceEEEeecCCCcEEEEEccCCCC--ceeeccccccceeEEEeecCC-CeeEEecCCCeEEEEEcCCCc-eeee
Q 022870          216 SKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHST-VSHC  289 (291)
Q Consensus       216 ~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vw~~~~~~-~~~~  289 (291)
                      ...    +|++|+.|..|++||.+++..  ...++.+|.+.|.++.|+|.. ..|++|+.|+++++||+++.+ .++.
T Consensus       311 ~~~----Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd  384 (423)
T KOG0313|consen  311 LSK----LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD  384 (423)
T ss_pred             ccc----eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee
Confidence            743    899999999999999997543  446788999999999998854 457999999999999999877 4444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=4.7e-28  Score=212.25  Aligned_cols=242  Identities=15%  Similarity=0.231  Sum_probs=175.2

Q ss_pred             eEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           11 VAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      ...+.+ ...|.+++|++ ++.+|++++.||+|++||+.+++.+..+..|...  |++++|+|. ++.+|++|+.||+|+
T Consensus       526 ~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~--V~~l~~~p~-~~~~L~Sgs~Dg~v~  601 (793)
T PLN00181        526 VVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR--VWSIDYSSA-DPTLLASGSDDGSVK  601 (793)
T ss_pred             eEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC--EEEEEEcCC-CCCEEEEEcCCCEEE
Confidence            334443 46799999998 5789999999999999999999999999989855  999999963 568999999999999


Q ss_pred             EEECCCCCCCCCCccccccc-eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870           90 CWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (291)
                      +||++++....    .+... ......+..............+...+|+++........+.+|..    +.|. ++..+ 
T Consensus       602 iWd~~~~~~~~----~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~l-  675 (793)
T PLN00181        602 LWSINQGVSIG----TIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTL-  675 (793)
T ss_pred             EEECCCCcEEE----EEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEE-
Confidence            99998775433    22221 12222222221222334445567788888766544445556665    6776 45444 


Q ss_pred             EEecCCcCeEEEEeCCCc------ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870          165 AVAGEQLSEVEIWDLNTA------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (291)
                      + +++.|+.|++||++..      .++..+.        +|..    .+..+. |+|+   +. +|++|+.||.|++|+.
T Consensus       676 v-s~s~D~~ikiWd~~~~~~~~~~~~l~~~~--------gh~~----~i~~v~-~s~~---~~-~lasgs~D~~v~iw~~  737 (793)
T PLN00181        676 V-SSSTDNTLKLWDLSMSISGINETPLHSFM--------GHTN----VKNFVG-LSVS---DG-YIATGSETNEVFVYHK  737 (793)
T ss_pred             E-EEECCCEEEEEeCCCCccccCCcceEEEc--------CCCC----CeeEEE-EcCC---CC-EEEEEeCCCEEEEEEC
Confidence            3 5667999999999753      4555665        6633    455565 9988   44 9999999999999998


Q ss_pred             cCCCCceee-------------ccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          239 RNPGIPLTA-------------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       239 ~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      .. ..++..             ...|...|.+++|++++..|++|+.||.|+||++
T Consensus       738 ~~-~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        738 AF-PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CC-CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            75 333221             2335567999999999999999999999999986

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-27  Score=174.77  Aligned_cols=248  Identities=17%  Similarity=0.279  Sum_probs=182.0

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEE---------------------------------
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS---------------------------------   55 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---------------------------------   55 (291)
                      ++.+.++.-...|+++.|+++|.++++++.|.+++|||..+++.+++                                 
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            34556666788899999999999999999999999999987665433                                 


Q ss_pred             -----------EeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccc
Q 022870           56 -----------SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA  124 (291)
Q Consensus        56 -----------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (291)
                                 +.+|...  |.+++.+|  -++.+++++.|++|++||++..++..    -+.......+++.+.  ...
T Consensus        85 Lsl~dNkylRYF~GH~~~--V~sL~~sP--~~d~FlS~S~D~tvrLWDlR~~~cqg----~l~~~~~pi~AfDp~--GLi  154 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKR--VNSLSVSP--KDDTFLSSSLDKTVRLWDLRVKKCQG----LLNLSGRPIAAFDPE--GLI  154 (311)
T ss_pred             EEeecCceEEEcCCCCce--EEEEEecC--CCCeEEecccCCeEEeeEecCCCCce----EEecCCCcceeECCC--CcE
Confidence                       3477744  99999999  77999999999999999999877654    222223333333333  233


Q ss_pred             eeccCCC-CceeeecccCc-cccccC--C--CCCC---cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCC
Q 022870          125 NAKQANE-PKDCYEREVGE-TVDTDS--L--CDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG  195 (291)
Q Consensus       125 ~~~~~~~-~~~~~~~~~~~-~~~~~~--~--~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~  195 (291)
                      .+...+. .+.+++++... .+-..+  .  .+..   +.|+|+|+.+++++.  .+.+++.|.-+|....++.      
T Consensus       155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~--~s~~~~lDAf~G~~~~tfs------  226 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN--ASFIYLLDAFDGTVKSTFS------  226 (311)
T ss_pred             EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC--CCcEEEEEccCCcEeeeEe------
Confidence            3333333 66777776542 111111  1  1222   999999999997554  5889999999999888887      


Q ss_pred             CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc-cccceeEEEeecCCCeeEEecCCC
Q 022870          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-HLEPVLCLSIDESCNGGISGGADQ  274 (291)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg  274 (291)
                        ++....... ... +|.|+   ++ ++++|+.||+|.+|++++ +..+..+++ +..++.++.|+|...+++|+  +.
T Consensus       227 --~~~~~~~~~-~~a-~ftPd---s~-Fvl~gs~dg~i~vw~~~t-g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s  295 (311)
T KOG1446|consen  227 --GYPNAGNLP-LSA-TFTPD---SK-FVLSGSDDGTIHVWNLET-GKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SS  295 (311)
T ss_pred             --eccCCCCcc-eeE-EECCC---Cc-EEEEecCCCcEEEEEcCC-CcEeeEecCCCCCCccccccCCceeeeeec--Cc
Confidence              454433333 333 39999   44 999999999999999999 888999888 78999999999997666665  56


Q ss_pred             eEEEEEcCCCc
Q 022870          275 KIVLYNLDHST  285 (291)
Q Consensus       275 ~i~vw~~~~~~  285 (291)
                      .+.+|=....+
T Consensus       296 ~l~fw~p~~~~  306 (311)
T KOG1446|consen  296 NLVFWLPDEDA  306 (311)
T ss_pred             eEEEEeccccc
Confidence            78888765443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=9.2e-29  Score=198.54  Aligned_cols=257  Identities=18%  Similarity=0.181  Sum_probs=200.7

Q ss_pred             CceEEecCCccceeEEEEc-CCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            9 DPVAVLRGHRASVTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      ++.+.+-|-.+.|..|+|- |+.++||.++..+.+|+++..+..+. .+.+|...  |.++....  +|.+|+||+.|.+
T Consensus       314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~--vlSL~~~~--~g~llat~sKD~s  388 (775)
T KOG0319|consen  314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEA--VLSLDVWS--SGDLLATGSKDKS  388 (775)
T ss_pred             EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhh--eeeeeecc--cCcEEEEecCCce
Confidence            3456677888999999986 47789999999999999998877766 78889855  99999555  6689999999999


Q ss_pred             EEEEECCCCCCCCCCccc--cccceEEEEEeecccCccceeccCCCCceeeecccCcc--------ccccCCCCCC----
Q 022870           88 VKCWDIENGGLSSNPSLT--IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--------VDTDSLCDSK----  153 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----  153 (291)
                      +++|.++.+.....++..  .+.+......++....+.............|.+.....        .......|.+    
T Consensus       389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~  468 (775)
T KOG0319|consen  389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC  468 (775)
T ss_pred             EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence            999999555433222222  33334444444444444445556667777887765211        1112234544    


Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                      ++++|+.. +++ +|+.|++.+||++++.+....+.        ||    +..++++. |+|.   .+ .+++++.|++|
T Consensus       469 Vaia~ndk-LiA-T~SqDktaKiW~le~~~l~~vLs--------GH----~RGvw~V~-Fs~~---dq-~laT~SgD~Tv  529 (775)
T KOG0319|consen  469 VAIAPNDK-LIA-TGSQDKTAKIWDLEQLRLLGVLS--------GH----TRGVWCVS-FSKN---DQ-LLATCSGDKTV  529 (775)
T ss_pred             eEecCCCc-eEE-ecccccceeeecccCceEEEEee--------CC----ccceEEEE-eccc---cc-eeEeccCCceE
Confidence            88999875 444 89999999999999988889998        88    45688998 9998   34 99999999999


Q ss_pred             EEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +||.+.+ ..+++++.||...|..+.|-.++..|+|++.||.|++|++.++.++.++
T Consensus       530 KIW~is~-fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl  585 (775)
T KOG0319|consen  530 KIWSIST-FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL  585 (775)
T ss_pred             EEEEecc-ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh
Confidence            9999999 9999999999999999999999999999999999999999999887653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=3.8e-28  Score=175.39  Aligned_cols=206  Identities=18%  Similarity=0.262  Sum_probs=163.3

Q ss_pred             EEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCC
Q 022870           53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP  132 (291)
Q Consensus        53 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (291)
                      .+++++|...  |.++.|++  |.++|++++.||.+.|||.-+.....  .++++..=...|.+++..    .....++.
T Consensus        48 rr~LkGH~~K--i~~~~ws~--Dsr~ivSaSqDGklIvWDs~TtnK~h--aipl~s~WVMtCA~sPSg----~~VAcGGL  117 (343)
T KOG0286|consen   48 RRTLKGHLNK--IYAMDWST--DSRRIVSASQDGKLIVWDSFTTNKVH--AIPLPSSWVMTCAYSPSG----NFVACGGL  117 (343)
T ss_pred             EEEecccccc--eeeeEecC--CcCeEEeeccCCeEEEEEccccccee--EEecCceeEEEEEECCCC----CeEEecCc
Confidence            4778899966  99999999  99999999999999999988776544  444554444455554443    33333332


Q ss_pred             ---ceeeecccC--c---cccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCC
Q 022870          133 ---KDCYEREVG--E---TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS  200 (291)
Q Consensus       133 ---~~~~~~~~~--~---~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  200 (291)
                         -.+|++...  +   .+...+.+|..    ..|-+|+ +++  +|+.|.+..+||+++++.+..|.        +| 
T Consensus       118 dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~il--T~SGD~TCalWDie~g~~~~~f~--------GH-  185 (343)
T KOG0286|consen  118 DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HIL--TGSGDMTCALWDIETGQQTQVFH--------GH-  185 (343)
T ss_pred             CceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceE--ecCCCceEEEEEcccceEEEEec--------CC-
Confidence               233444422  2   45566888888    5666654 555  77889999999999999999998        77 


Q ss_pred             CCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                         .+-+.++. ++|.  +++ .+++|+-|+..++||+|. +..++.|.+|+..|+++.|.|+|.-+++||+|++.|+||
T Consensus       186 ---~gDV~sls-l~p~--~~n-tFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD  257 (343)
T KOG0286|consen  186 ---TGDVMSLS-LSPS--DGN-TFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD  257 (343)
T ss_pred             ---cccEEEEe-cCCC--CCC-eEEecccccceeeeeccC-cceeEeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence               55788887 9995  244 899999999999999999 899999999999999999999999999999999999999


Q ss_pred             cCCCceee
Q 022870          281 LDHSTVSH  288 (291)
Q Consensus       281 ~~~~~~~~  288 (291)
                      ++..+.+.
T Consensus       258 lRaD~~~a  265 (343)
T KOG0286|consen  258 LRADQELA  265 (343)
T ss_pred             ecCCcEEe
Confidence            99877654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-28  Score=175.10  Aligned_cols=218  Identities=18%  Similarity=0.265  Sum_probs=169.6

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC--
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR--   84 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--   84 (291)
                      .++.+.+++||++.|+|++.+-+..+++||+.|.++++||+++|+++..++..   .+|..+.|++  +|++++....  
T Consensus        41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~---~~Vk~~~F~~--~gn~~l~~tD~~  115 (327)
T KOG0643|consen   41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN---SPVKRVDFSF--GGNLILASTDKQ  115 (327)
T ss_pred             CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC---CeeEEEeecc--CCcEEEEEehhh
Confidence            45778899999999999999999999999999999999999999999998865   5699999999  8888876654  


Q ss_pred             ---CCeEEEEECCCCCC---CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCC
Q 022870           85 ---DGTVKCWDIENGGL---SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA  158 (291)
Q Consensus        85 ---dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (291)
                         .+.|.++|++....   ..+|...+........  .                                    .-|.|
T Consensus       116 mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit--~------------------------------------a~Wg~  157 (327)
T KOG0643|consen  116 MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT--S------------------------------------ALWGP  157 (327)
T ss_pred             cCcceEEEEEEccCChhhhcccCceEEecCCcccee--e------------------------------------eeecc
Confidence               46899999985432   1122222222110000  0                                    34888


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (291)
                      -++.++  +|..||.|..||+++++....-..       .|    ...+..++ |+|+..    ++++++.|.+-++||.
T Consensus       158 l~~~ii--~Ghe~G~is~~da~~g~~~v~s~~-------~h----~~~Ind~q-~s~d~T----~FiT~s~Dttakl~D~  219 (327)
T KOG0643|consen  158 LGETII--AGHEDGSISIYDARTGKELVDSDE-------EH----SSKINDLQ-FSRDRT----YFITGSKDTTAKLVDV  219 (327)
T ss_pred             cCCEEE--EecCCCcEEEEEcccCceeeechh-------hh----cccccccc-ccCCcc----eEEecccCccceeeec
Confidence            888776  788899999999999865544432       34    33667776 999854    9999999999999998


Q ss_pred             cCCCC------------------------------------------------------ceeeccccccceeEEEeecCC
Q 022870          239 RNPGI------------------------------------------------------PLTAMKVHLEPVLCLSIDESC  264 (291)
Q Consensus       239 ~~~~~------------------------------------------------------~~~~~~~h~~~v~~~~~~~~~  264 (291)
                      ++...                                                      .+..+++|-++|++++|+|+|
T Consensus       220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG  299 (327)
T KOG0643|consen  220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG  299 (327)
T ss_pred             cceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence            76211                                                      144567899999999999999


Q ss_pred             CeeEEecCCCeEEEEEcCCCc
Q 022870          265 NGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       265 ~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      +..+||++||.||+.-++..-
T Consensus       300 ksYsSGGEDG~VR~h~Fd~~Y  320 (327)
T KOG0643|consen  300 KSYSSGGEDGYVRLHHFDSNY  320 (327)
T ss_pred             cccccCCCCceEEEEEeccch
Confidence            999999999999998776543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=2.3e-28  Score=182.28  Aligned_cols=253  Identities=18%  Similarity=0.307  Sum_probs=185.5

Q ss_pred             CCCceEEecCCccceeEEEEcCCC---CEEEEecCCCeEEEEeCCCCeEE----EEEeeecCCcceEEEEEeecCCCCeE
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTK---PILFAGTTGGELRIWDTVQHRTV----SSSWVHSAAHGIVSVATGPSIGLNKV   79 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l   79 (291)
                      .++..+++.||.++|.+++|....   ..|++++.|.++++|..+.++..    ..-.+|...  |.++...+  ++..+
T Consensus       133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~--V~sVsv~~--sgtr~  208 (423)
T KOG0313|consen  133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRS--VDSVSVDS--SGTRF  208 (423)
T ss_pred             CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccc--eeEEEecC--CCCeE
Confidence            467889999999999998886533   35999999999999998876432    233478744  99999999  99999


Q ss_pred             EEEeCCCeEEEEECCCCCC---------------------CCCCccccccceEEEEEeecccCccceeccCCCCceeeec
Q 022870           80 ISQGRDGTVKCWDIENGGL---------------------SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYER  138 (291)
Q Consensus        80 ~s~~~dg~i~iwd~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
                      ++|+.|.+|++|+.++...                     .+.|+.++..+......+-...........-.-....|++
T Consensus       209 ~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDl  288 (423)
T KOG0313|consen  209 CSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDL  288 (423)
T ss_pred             EeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEe
Confidence            9999999999999332110                     1123333333332222222222222333344456777888


Q ss_pred             ccCccccccCCCCCC--cccCCCCCcEEEEecCCcCeEEEEeCCCcc---eeeEecccccCCCCCCCCCcceeeeeEEEe
Q 022870          139 EVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAY  213 (291)
Q Consensus       139 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (291)
                      ..............-  ++++|... +++ +|+.|..+++||.+++.   ..+++.        +|    ...+.++. |
T Consensus       289 etg~~~~~~~~~ksl~~i~~~~~~~-Ll~-~gssdr~irl~DPR~~~gs~v~~s~~--------gH----~nwVssvk-w  353 (423)
T KOG0313|consen  289 ETGGLKSTLTTNKSLNCISYSPLSK-LLA-SGSSDRHIRLWDPRTGDGSVVSQSLI--------GH----KNWVSSVK-W  353 (423)
T ss_pred             ecccceeeeecCcceeEeecccccc-eee-ecCCCCceeecCCCCCCCceeEEeee--------cc----hhhhhhee-c
Confidence            877766655555444  77888654 444 78889999999999875   234454        77    45788887 9


Q ss_pred             cCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          214 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       214 ~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      +|.   ..+.|++|+.|+++++||+|+...++..+.+|.+.|.++.|...+ ++++||.|++|+++.-.
T Consensus       354 sp~---~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  354 SPT---NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG-LIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCC---CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc-eEEeccCcceEEEeccc
Confidence            998   334899999999999999999556999999999999999997654 68999999999998754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.7e-28  Score=178.84  Aligned_cols=245  Identities=17%  Similarity=0.304  Sum_probs=187.7

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .++..+..|.++|++++.  ++.++|+|+.|-+|+|||+.+...+..+-.|.+.  |+++.|.+....+.|++|+.||.|
T Consensus        34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~Hags--itaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGS--ITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccc--eEEEEecCCcchhheeeecCCCcE
Confidence            347888999999999998  5789999999999999999999999888888755  999999983223489999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCcc-ceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA  165 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  165 (291)
                      .+|+...-.+..    +++.+......+++..+.. ............|++-.++........+..  +.|+|.|.++++
T Consensus       110 ~iw~~~~W~~~~----slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  110 IIWRVGSWELLK----SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV  185 (362)
T ss_pred             EEEEcCCeEEee----eecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence            999998765543    4444444344444444444 334455566778888776644433333333  899999997765


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                       .+.  ..|-+|.+.+......+..             ...+.++. |..    +. +|++|.+|+.|.+||..+ ..++
T Consensus       186 -~~~--~~i~i~q~d~A~v~~~i~~-------------~~r~l~~~-~l~----~~-~L~vG~d~~~i~~~D~ds-~~~~  242 (362)
T KOG0294|consen  186 -SGR--NKIDIYQLDNASVFREIEN-------------PKRILCAT-FLD----GS-ELLVGGDNEWISLKDTDS-DTPL  242 (362)
T ss_pred             -Eec--cEEEEEecccHhHhhhhhc-------------cccceeee-ecC----Cc-eEEEecCCceEEEeccCC-Cccc
Confidence             343  5799999988776655552             11233333 432    22 899999999999999998 8999


Q ss_pred             eeccccccceeEEEe--ecCCCeeEEecCCCeEEEEEcCCC
Q 022870          246 TAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       246 ~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      ..+.+|..+|.++.+  +|.+.+|+|+|.||.|+|||++..
T Consensus       243 ~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  243 TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            999999999999996  788999999999999999999876

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2.2e-28  Score=196.41  Aligned_cols=248  Identities=16%  Similarity=0.280  Sum_probs=188.3

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      -+.+.||++.|.++....+|.+|+||+.|.++++|.++++    .++....+|.+.  |.+++++.. ....|+++|.|+
T Consensus       358 c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s--vgava~~~~-~asffvsvS~D~  434 (775)
T KOG0319|consen  358 CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS--VGAVAGSKL-GASFFVSVSQDC  434 (775)
T ss_pred             eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc--cceeeeccc-CccEEEEecCCc
Confidence            3478999999999997677889999999999999988543    245556678865  999999762 336899999999


Q ss_pred             eEEEEECCCCCCCCCC-cc----ccccceEEEEEeecccCccce-eccCCCCceeeecccCccccccCCCCCC----ccc
Q 022870           87 TVKCWDIENGGLSSNP-SL----TIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDV  156 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  156 (291)
                      ++++|++...+....| .+    +...+......+.+....... .........+|++. .......+.+|..    +.|
T Consensus       435 tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~V~F  513 (775)
T KOG0319|consen  435 TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWCVSF  513 (775)
T ss_pred             eEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeCCccceEEEEe
Confidence            9999999873322211 11    112222222222333222222 22233445667777 4456667888887    899


Q ss_pred             CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (291)
                      +|... +++ ++|.|++|+||.+.+..++.++.        ||    ...+.... |-.+   |. .|++++.||.|++|
T Consensus       514 s~~dq-~la-T~SgD~TvKIW~is~fSClkT~e--------GH----~~aVlra~-F~~~---~~-qliS~~adGliKlW  574 (775)
T KOG0319|consen  514 SKNDQ-LLA-TCSGDKTVKIWSISTFSCLKTFE--------GH----TSAVLRAS-FIRN---GK-QLISAGADGLIKLW  574 (775)
T ss_pred             ccccc-eeE-eccCCceEEEEEeccceeeeeec--------Cc----cceeEeee-eeeC---Cc-EEEeccCCCcEEEE
Confidence            99875 444 66779999999999999999999        88    44566666 8766   44 89999999999999


Q ss_pred             EccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      ++++ ..++.++.+|.+.|++++.++...+++||+.||.|.+|.=.
T Consensus       575 nikt-~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  575 NIKT-NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             eccc-hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence            9999 99999999999999999999999999999999999999643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=4.6e-27  Score=182.26  Aligned_cols=252  Identities=20%  Similarity=0.284  Sum_probs=182.4

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE--EEEEeeecCCcceEEEEEeecCCCCeEEEEeCC-
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-   85 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-   85 (291)
                      .....+.+|..+++-..|+|.|.++|+|...|+|||||....+.  ..+++.-.  .+|..++|++  ++.++++.++- 
T Consensus        50 ~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a--G~I~Di~Wd~--ds~RI~avGEGr  125 (603)
T KOG0318|consen   50 ASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA--GPIKDISWDF--DSKRIAAVGEGR  125 (603)
T ss_pred             cceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc--cccccceeCC--CCcEEEEEecCc
Confidence            34667889999999999999999999999999999999765332  23444444  5599999999  99999887753 


Q ss_pred             ---CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCC
Q 022870           86 ---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (291)
Q Consensus        86 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  158 (291)
                         |.+.+||--+  ...  .+..+......+.+.+..-.......+......+.-.+ ......+..|..    +.|+|
T Consensus       126 erfg~~F~~DSG~--SvG--ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-FKFk~s~r~HskFV~~VRysP  200 (603)
T KOG0318|consen  126 ERFGHVFLWDSGN--SVG--EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-FKFKSSFREHSKFVNCVRYSP  200 (603)
T ss_pred             cceeEEEEecCCC--ccc--eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC-eeeeecccccccceeeEEECC
Confidence               4566777543  222  22344444444444433222222222223333332222 223334455555    89999


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (291)
                      ||+. ++++|+ ||.+.+||=.+++.+..+..         ...+.+.++++. |+||+.    .+++++.|.+++|||+
T Consensus       201 DG~~-Fat~gs-Dgki~iyDGktge~vg~l~~---------~~aHkGsIfals-WsPDs~----~~~T~SaDkt~KIWdV  264 (603)
T KOG0318|consen  201 DGSR-FATAGS-DGKIYIYDGKTGEKVGELED---------SDAHKGSIFALS-WSPDST----QFLTVSADKTIKIWDV  264 (603)
T ss_pred             CCCe-EEEecC-CccEEEEcCCCccEEEEecC---------CCCccccEEEEE-ECCCCc----eEEEecCCceEEEEEe
Confidence            9865 554555 99999999999999999873         234578899998 999954    8999999999999998


Q ss_pred             cCCCC-------------------------------------------ceeeccccccceeEEEeecCCCeeEEecCCCe
Q 022870          239 RNPGI-------------------------------------------PLTAMKVHLEPVLCLSIDESCNGGISGGADQK  275 (291)
Q Consensus       239 ~~~~~-------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~  275 (291)
                      .+ .+                                           ++..+.+|...|+++..++++.+|++|+.||.
T Consensus       265 s~-~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~  343 (603)
T KOG0318|consen  265 ST-NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH  343 (603)
T ss_pred             ec-cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence            76 32                                           24556789999999999999999999999999


Q ss_pred             EEEEEcCCCce
Q 022870          276 IVLYNLDHSTV  286 (291)
Q Consensus       276 i~vw~~~~~~~  286 (291)
                      |.-|+..++..
T Consensus       344 I~~W~~~~g~~  354 (603)
T KOG0318|consen  344 INSWDSGSGTS  354 (603)
T ss_pred             EEEEecCCccc
Confidence            99999987754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2.9e-28  Score=178.93  Aligned_cols=256  Identities=12%  Similarity=0.195  Sum_probs=186.1

Q ss_pred             CceEEec-CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEE--------eeecCCcceEEEEEeecCCCCeE
Q 022870            9 DPVAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--------WVHSAAHGIVSVATGPSIGLNKV   79 (291)
Q Consensus         9 ~~~~~l~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~l   79 (291)
                      ...+.++ |.++-+-|..|+|||++|++|+.||.|.+||..+|+..+.+        ..+.  ++|.|+.|+.  |...+
T Consensus       203 ~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd--~aVlci~FSR--DsEMl  278 (508)
T KOG0275|consen  203 QLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD--DAVLCISFSR--DSEML  278 (508)
T ss_pred             HhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecc--cceEEEeecc--cHHHh
Confidence            3334444 45677899999999999999999999999999988765543        3455  4599999999  98999


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCccc-cccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----c
Q 022870           80 ISQGRDGTVKCWDIENGGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----D  154 (291)
Q Consensus        80 ~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  154 (291)
                      ++|+.||.|++|.++++.+.+  .+. .+........|+-..+....+. ......+-.+..+ .....+.+|..    .
T Consensus       279 AsGsqDGkIKvWri~tG~ClR--rFdrAHtkGvt~l~FSrD~SqiLS~s-fD~tvRiHGlKSG-K~LKEfrGHsSyvn~a  354 (508)
T KOG0275|consen  279 ASGSQDGKIKVWRIETGQCLR--RFDRAHTKGVTCLSFSRDNSQILSAS-FDQTVRIHGLKSG-KCLKEFRGHSSYVNEA  354 (508)
T ss_pred             hccCcCCcEEEEEEecchHHH--HhhhhhccCeeEEEEccCcchhhccc-ccceEEEeccccc-hhHHHhcCccccccce
Confidence            999999999999999998866  222 2223333333333332222111 1111222223333 33446777777    8


Q ss_pred             ccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (291)
Q Consensus       155 ~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (291)
                      .|+++|.+++  +++.||+|++|+..+.+++.+++..      +    ....+.++. .-|..+  + .++++...++|+
T Consensus       355 ~ft~dG~~ii--saSsDgtvkvW~~KtteC~~Tfk~~------~----~d~~vnsv~-~~PKnp--e-h~iVCNrsntv~  418 (508)
T KOG0275|consen  355 TFTDDGHHII--SASSDGTVKVWHGKTTECLSTFKPL------G----TDYPVNSVI-LLPKNP--E-HFIVCNRSNTVY  418 (508)
T ss_pred             EEcCCCCeEE--EecCCccEEEecCcchhhhhhccCC------C----CcccceeEE-EcCCCC--c-eEEEEcCCCeEE
Confidence            8999998877  6677999999999999999999842      1    233455555 666533  2 788899999999


Q ss_pred             EEEccCCCCceeecccc---ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          235 VWDIRNPGIPLTAMKVH---LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       235 vwd~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      |.++.  ++.++++...   .+...+.+.+|.|.++.+.+.|+.++-+.+.+|++-+++
T Consensus       419 imn~q--GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl  475 (508)
T KOG0275|consen  419 IMNMQ--GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL  475 (508)
T ss_pred             EEecc--ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence            99998  7888887632   235566778999999999999999999999999987765

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.1e-28  Score=185.83  Aligned_cols=246  Identities=17%  Similarity=0.269  Sum_probs=185.9

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +.+.+|.|-.++|+.+.|.+++..+++++.|+.+++|++.+.+...++.+|...  |+++.|..  ....+++|+.|.+|
T Consensus       210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk--Vt~ak~~~--~~~~vVsgs~DRti  285 (459)
T KOG0288|consen  210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK--VTAAKFKL--SHSRVVSGSADRTI  285 (459)
T ss_pred             hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc--eeeehhhc--cccceeeccccchh
Confidence            367788999999999999999999999999999999999999999999999966  99999988  55569999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcccccc-CCCCCC-cccCCCCCcEEEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SLCDSK-DDVPAEGPKYMAV  166 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~  166 (291)
                      ++||+....+...+...-..........      .....-....+..|+.+........ ..+.-. +..++++..++  
T Consensus       286 K~WDl~k~~C~kt~l~~S~cnDI~~~~~------~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lL--  357 (459)
T KOG0288|consen  286 KLWDLQKAYCSKTVLPGSQCNDIVCSIS------DVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELL--  357 (459)
T ss_pred             hhhhhhhhheeccccccccccceEecce------eeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEe--
Confidence            9999998777654333323222222111      1111112233556666555433322 222211 88899998877  


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +++.|.++.+.|+++.+....+...      +...  ......+. |+|++.    |+++|+.||.|+||++.+ +++..
T Consensus       358 sssRDdtl~viDlRt~eI~~~~sA~------g~k~--asDwtrvv-fSpd~~----YvaAGS~dgsv~iW~v~t-gKlE~  423 (459)
T KOG0288|consen  358 SSSRDDTLKVIDLRTKEIRQTFSAE------GFKC--ASDWTRVV-FSPDGS----YVAAGSADGSVYIWSVFT-GKLEK  423 (459)
T ss_pred             eecCCCceeeeecccccEEEEeecc------cccc--ccccceeE-ECCCCc----eeeeccCCCcEEEEEccC-ceEEE
Confidence            4577999999999999988888743      2211  22245565 999844    999999999999999998 88887


Q ss_pred             ecccccc--ceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          247 AMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       247 ~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      .+.....  .|++++|+|.|..|++++.++.+.+|.
T Consensus       424 ~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  424 VLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            7775444  599999999999999999999999993

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=4.6e-28  Score=184.40  Aligned_cols=209  Identities=17%  Similarity=0.257  Sum_probs=161.7

Q ss_pred             CCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCe----------EEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870           16 GHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR----------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus        16 ~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      -|.+.|+.+.+.| +..++|+++..+.|.|||..+..          +-..+.+|...  -++++|++.. ...|++++.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e--g~glsWn~~~-~g~Lls~~~  198 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE--GYGLSWNRQQ-EGTLLSGSD  198 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc--cccccccccc-ceeEeeccC
Confidence            4999999999999 55677888999999999976521          12267788764  7899999963 368999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCC
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG  160 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  160 (291)
                      |++|++||+........ ...                                      ....+.+|..    ++|++..
T Consensus       199 d~~i~lwdi~~~~~~~~-~~~--------------------------------------p~~~~~~h~~~VeDV~~h~~h  239 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDK-VVD--------------------------------------PKTIFSGHEDVVEDVAWHPLH  239 (422)
T ss_pred             CCcEEEEeccccccCCc-ccc--------------------------------------ceEEeecCCcceehhhccccc
Confidence            99999999987643210 000                                      0011122222    7799999


Q ss_pred             CcEEEEecCCcCeEEEEeCCC--cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870          161 PKYMAVAGEQLSEVEIWDLNT--AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (291)
                      ..+|+++|. |+.+.|||+|+  .++.....        +|    .+.+.++. |+|.+  + ..||+|+.|++|++||+
T Consensus       240 ~~lF~sv~d-d~~L~iwD~R~~~~~~~~~~~--------ah----~~~vn~~~-fnp~~--~-~ilAT~S~D~tV~LwDl  302 (422)
T KOG0264|consen  240 EDLFGSVGD-DGKLMIWDTRSNTSKPSHSVK--------AH----SAEVNCVA-FNPFN--E-FILATGSADKTVALWDL  302 (422)
T ss_pred             hhhheeecC-CCeEEEEEcCCCCCCCccccc--------cc----CCceeEEE-eCCCC--C-ceEEeccCCCcEEEeec
Confidence            999886665 99999999996  33333333        44    55677887 99983  3 39999999999999999


Q ss_pred             cCCCCceeeccccccceeEEEeecC-CCeeEEecCCCeEEEEEcCC
Q 022870          239 RNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~  283 (291)
                      |+..+++..+.+|...|..+.|+|+ ...|||++.|+.+.|||+..
T Consensus       303 RnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  303 RNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             hhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            9999999999999999999999985 45789999999999999975

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3e-28  Score=199.53  Aligned_cols=210  Identities=17%  Similarity=0.277  Sum_probs=176.0

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      ..++..+..|..++|+|...+++++-..|.|.+||..-+.++..|..|.++  |..+.|+|  .+.++++|+.|..|++|
T Consensus         3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGp--VRgv~FH~--~qplFVSGGDDykIkVW   78 (1202)
T KOG0292|consen    3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGP--VRGVDFHP--TQPLFVSGGDDYKIKVW   78 (1202)
T ss_pred             chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCc--cceeeecC--CCCeEEecCCccEEEEE
Confidence            346667788999999999999999999999999999999999999999955  99999999  88999999999999999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (291)
                      +..+.++..    ++..+-.....                                      +.|++.-+.++  ++|.|
T Consensus        79 nYk~rrclf----tL~GHlDYVRt--------------------------------------~~FHheyPWIl--SASDD  114 (1202)
T KOG0292|consen   79 NYKTRRCLF----TLLGHLDYVRT--------------------------------------VFFHHEYPWIL--SASDD  114 (1202)
T ss_pred             ecccceehh----hhccccceeEE--------------------------------------eeccCCCceEE--EccCC
Confidence            999987743    44333211111                                      34788777666  78889


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC--------
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--------  243 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--------  243 (291)
                      .+|+||+..+++++..+.        ||    +..+++.+ |+|...    .+++++-|.+|||||+.-..+        
T Consensus       115 QTIrIWNwqsr~~iavlt--------GH----nHYVMcAq-FhptED----lIVSaSLDQTVRVWDisGLRkk~~~pg~~  177 (1202)
T KOG0292|consen  115 QTIRIWNWQSRKCIAVLT--------GH----NHYVMCAQ-FHPTED----LIVSASLDQTVRVWDISGLRKKNKAPGSL  177 (1202)
T ss_pred             CeEEEEeccCCceEEEEe--------cC----ceEEEeec-cCCccc----eEEEecccceEEEEeecchhccCCCCCCc
Confidence            999999999999999999        77    55888887 999743    899999999999999853110        


Q ss_pred             --------------------ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          244 --------------------PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       244 --------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                                          ....+.||...|+-++|+|...+++||++|..|++|.++..+.
T Consensus       178 e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  178 EDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             hhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence                                1234678999999999999999999999999999999987654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=1.7e-27  Score=181.41  Aligned_cols=215  Identities=20%  Similarity=0.267  Sum_probs=165.2

Q ss_pred             CceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCe-------EEEEEeeecCCcceEEEEEeecCCCCeEE
Q 022870            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR-------TVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (291)
                      +|-.+|.||++.=++|+|++ ..-.|++|+.|++|++||+....       ....+.+|...  |..++|++. +..+|+
T Consensus       168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~--VeDV~~h~~-h~~lF~  244 (422)
T KOG0264|consen  168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDV--VEDVAWHPL-HEDLFG  244 (422)
T ss_pred             CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcc--eehhhcccc-chhhhe
Confidence            55668999999899999999 34489999999999999987532       34456777755  999999996 457899


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCC
Q 022870           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG  160 (291)
Q Consensus        81 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (291)
                      +++.|+.+.|||++++.  .++......+......                                      ++|+|.+
T Consensus       245 sv~dd~~L~iwD~R~~~--~~~~~~~~ah~~~vn~--------------------------------------~~fnp~~  284 (422)
T KOG0264|consen  245 SVGDDGKLMIWDTRSNT--SKPSHSVKAHSAEVNC--------------------------------------VAFNPFN  284 (422)
T ss_pred             eecCCCeEEEEEcCCCC--CCCcccccccCCceeE--------------------------------------EEeCCCC
Confidence            99999999999999641  1222222222111110                                      5689998


Q ss_pred             CcEEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          161 PKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      ..++| +|+.|++|.+||+|+.. ++.++.        +|    ...+..+. |+|..   ...|++++.|+.+.|||+.
T Consensus       285 ~~ilA-T~S~D~tV~LwDlRnL~~~lh~~e--------~H----~dev~~V~-WSPh~---etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  285 EFILA-TGSADKTVALWDLRNLNKPLHTFE--------GH----EDEVFQVE-WSPHN---ETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             CceEE-eccCCCcEEEeechhcccCceecc--------CC----CcceEEEE-eCCCC---CceeEecccCCcEEEEecc
Confidence            88777 67789999999999864 556666        66    45688887 99983   2399999999999999997


Q ss_pred             CCCC-------------ceeeccccccceeEEEeecCCCee-EEecCCCeEEEEEcCC
Q 022870          240 NPGI-------------PLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDH  283 (291)
Q Consensus       240 ~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~vw~~~~  283 (291)
                      .-+.             ++..-.||...|..+.|+|+..++ +|.+.|+.+.||....
T Consensus       348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            5332             245667899999999999987764 7888999999999863

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=8e-28  Score=186.14  Aligned_cols=229  Identities=16%  Similarity=0.205  Sum_probs=164.6

Q ss_pred             CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe----EEEEEee-ecCCcceEEEEEeecCCCCeEE
Q 022870            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWV-HSAAHGIVSVATGPSIGLNKVI   80 (291)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~   80 (291)
                      .|......|++|+..|.++++.|.|..|++|+.|.+|++||+....    ..+.+.. ..  ..|.+++|++  .|+.|+
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~ys~--Tg~~iL  230 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQYSV--TGDQIL  230 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccc--cccceeeecC--CCCeEE
Confidence            5667778899999999999999999999999999999999987432    1222222 22  3399999999  889999


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----ccc
Q 022870           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV  156 (291)
Q Consensus        81 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  156 (291)
                      +.+.....+|+|-.......    ..+...+..                       ++       ....+|..    .+|
T Consensus       231 vvsg~aqakl~DRdG~~~~e----~~KGDQYI~-----------------------Dm-------~nTKGHia~lt~g~w  276 (641)
T KOG0772|consen  231 VVSGSAQAKLLDRDGFEIVE----FSKGDQYIR-----------------------DM-------YNTKGHIAELTCGCW  276 (641)
T ss_pred             EEecCcceeEEccCCceeee----eeccchhhh-----------------------hh-------hccCCceeeeecccc
Confidence            88888999999977654322    111111100                       00       01111211    569


Q ss_pred             CCCCCcEEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (291)
                      +|+.+..+++ ++.||++++||+...+ ....++.       .-....+..+..+. |+|+   |. .||+|+.||.|.+
T Consensus       277 hP~~k~~FlT-~s~DgtlRiWdv~~~k~q~qVik~-------k~~~g~Rv~~tsC~-~nrd---g~-~iAagc~DGSIQ~  343 (641)
T KOG0772|consen  277 HPDNKEEFLT-CSYDGTLRIWDVNNTKSQLQVIKT-------KPAGGKRVPVTSCA-WNRD---GK-LIAAGCLDGSIQI  343 (641)
T ss_pred             ccCcccceEE-ecCCCcEEEEecCCchhheeEEee-------ccCCCcccCceeee-cCCC---cc-hhhhcccCCceee
Confidence            9999888884 5569999999998654 3344432       11122344556665 9999   44 8999999999999


Q ss_pred             EEccCCC-Cc-eeecccccc--ceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          236 WDIRNPG-IP-LTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       236 wd~~~~~-~~-~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      |+..+.. .+ +..-++|..  .|++|.|+++|++|++-|.|+++++||++..+
T Consensus       344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             eecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            9986422 22 233457876  89999999999999999999999999998754

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=3.1e-28  Score=183.36  Aligned_cols=256  Identities=16%  Similarity=0.235  Sum_probs=195.8

Q ss_pred             CCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      ..|.+....+..|.+.|..+.|-++...|++|+.|..|++|++..++  .+.++.+..+  +|+++.|.+  ++..++++
T Consensus       162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g--~it~~d~d~--~~~~~iAa  237 (459)
T KOG0288|consen  162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLG--NITSIDFDS--DNKHVIAA  237 (459)
T ss_pred             ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCC--CcceeeecC--CCceEEee
Confidence            45777888999999999999999998899999999999999987665  5666766664  499999999  88999999


Q ss_pred             eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCC
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG  160 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  160 (291)
                      +.|+.+++|++...+...  .++.+........+...... ............|++.........+.+..-  ++.+  .
T Consensus       238 s~d~~~r~Wnvd~~r~~~--TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~  312 (459)
T KOG0288|consen  238 SNDKNLRLWNVDSLRLRH--TLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--I  312 (459)
T ss_pred             cCCCceeeeeccchhhhh--hhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--c
Confidence            999999999999887655  33444444433333322222 233334455667788777666666665544  4444  2


Q ss_pred             CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                        ..+++|..|+.|++||.++..+....+             ..+.+.++. .+++   |. .|++.+.|..+.+.|+++
T Consensus       313 --~~~~SgH~DkkvRfwD~Rs~~~~~sv~-------------~gg~vtSl~-ls~~---g~-~lLsssRDdtl~viDlRt  372 (459)
T KOG0288|consen  313 --SDVISGHFDKKVRFWDIRSADKTRSVP-------------LGGRVTSLD-LSMD---GL-ELLSSSRDDTLKVIDLRT  372 (459)
T ss_pred             --eeeeecccccceEEEeccCCceeeEee-------------cCcceeeEe-eccC---Ce-EEeeecCCCceeeeeccc
Confidence              223389999999999999999988887             245778887 8887   44 788889999999999998


Q ss_pred             CCCceeecccc----ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          241 PGIPLTAMKVH----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       241 ~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                       ......+.+.    ....+.+.|+|++.|+++||.||.|+||++.++++-..+
T Consensus       373 -~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  373 -KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL  425 (459)
T ss_pred             -ccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence             6665555431    234889999999999999999999999999999987643

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2e-27  Score=182.49  Aligned_cols=245  Identities=18%  Similarity=0.266  Sum_probs=193.0

Q ss_pred             ccceeEEEEcCCC-CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           18 RASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        18 ~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      .+.|.+++|+|.. .-+|+.+. -.|.||+..+....+.+.-..  +.|.++.|..  ||.+|++|...|.|+++|..+.
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk--~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFK--DVVYSVDFRS--DGRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhc--cceeEEEeec--CCeEEEccCCcCcEEEeccccH
Confidence            4679999999943 33444443 479999988777766665555  4499999999  9999999999999999996654


Q ss_pred             CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcC
Q 022870           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~  172 (291)
                      ..++  .+..+..+.+...|++..........++....+|++..... ...+.+|.+    .+++|..+++++ +|+.||
T Consensus       101 ~iLR--~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivv-tGsYDg  176 (487)
T KOG0310|consen  101 VILR--QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVV-TGSYDG  176 (487)
T ss_pred             HHHH--HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEE-ecCCCc
Confidence            3332  33455567777777777777777778888888999988875 667888888    889999888776 788899


Q ss_pred             eEEEEeCCCc-ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc
Q 022870          173 EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (291)
Q Consensus       173 ~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (291)
                      .|++||++.. ..+.++.         |    ..++-.+. |-|.+   . .+++++. ..|+|||+.++++.+..+..|
T Consensus       177 ~vrl~DtR~~~~~v~eln---------h----g~pVe~vl-~lpsg---s-~iasAgG-n~vkVWDl~~G~qll~~~~~H  237 (487)
T KOG0310|consen  177 KVRLWDTRSLTSRVVELN---------H----GCPVESVL-ALPSG---S-LIASAGG-NSVKVWDLTTGGQLLTSMFNH  237 (487)
T ss_pred             eEEEEEeccCCceeEEec---------C----CCceeeEE-EcCCC---C-EEEEcCC-CeEEEEEecCCceehhhhhcc
Confidence            9999999987 5555564         3    33455555 88874   3 6777664 579999999878888888889


Q ss_pred             ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ...|+|+.+..++..|+|||-|+.+++||+.+.+.++.+
T Consensus       238 ~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~  276 (487)
T KOG0310|consen  238 NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW  276 (487)
T ss_pred             cceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence            999999999999999999999999999999998888753

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=1.9e-27  Score=172.19  Aligned_cols=211  Identities=21%  Similarity=0.313  Sum_probs=162.0

Q ss_pred             ecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCe------------EE-E--EEeeecCCcceEEEEEeecCCCC
Q 022870           14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR------------TV-S--SSWVHSAAHGIVSVATGPSIGLN   77 (291)
Q Consensus        14 l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~------------~~-~--~~~~~~~~~~v~~~~~~~~~~~~   77 (291)
                      .+.|.+.|+++...+ .|+++++|+.||.+.+||+++..            ++ .  .-.+|.  -.|.++.|.|. |..
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk--y~iss~~WyP~-DtG  115 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK--YAISSAIWYPI-DTG  115 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccce--eeeeeeEEeee-cCc
Confidence            456999999999999 89999999999999999997532            11 0  012344  44999999997 557


Q ss_pred             eEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccC
Q 022870           78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP  157 (291)
Q Consensus        78 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (291)
                      .+.+++.|.++++||..+.+...  .+.++..-+.                                         .+++
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~--~F~me~~VYs-----------------------------------------hamS  152 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAV--DFKMEGKVYS-----------------------------------------HAMS  152 (397)
T ss_pred             eeecccccceEEEeecccceeeE--EeecCceeeh-----------------------------------------hhcC
Confidence            88999999999999999875422  2222211111                                         2244


Q ss_pred             CCC-CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870          158 AEG-PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (291)
Q Consensus       158 ~~~-~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (291)
                      |-. .+.++++|..|-.|++-|+.++.....+.        ||    +..++++. |+|.   .+..|++|+.||.|++|
T Consensus       153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls--------GH----r~~vlaV~-Wsp~---~e~vLatgsaDg~irlW  216 (397)
T KOG4283|consen  153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS--------GH----RDGVLAVE-WSPS---SEWVLATGSADGAIRLW  216 (397)
T ss_pred             hhhhcceEEEEecCCCcEEEEeccCCcceeeec--------cc----cCceEEEE-eccC---ceeEEEecCCCceEEEE
Confidence            432 24566689999999999999999999998        88    55688887 9998   44589999999999999


Q ss_pred             EccCCCCceeec--------------cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          237 DIRNPGIPLTAM--------------KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       237 d~~~~~~~~~~~--------------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      |++....+...+              ..|.+.|++++|..++.++++++.|..+++|+..+|+-
T Consensus       217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             EeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence            998642333332              35677899999999999999999999999999988753

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.2e-27  Score=181.33  Aligned_cols=213  Identities=17%  Similarity=0.259  Sum_probs=165.8

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      .++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+..|-..  |+|+.|+.  ||..|+|||.||.|.+|.+...-
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~--ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS--ITCLKFSD--DGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccc--eeEEEEeC--CCcEEEecCCCccEEEEEEEeec
Confidence            578999999999999999989999999999999999999888855  99999999  99999999999999999976421


Q ss_pred             C-----CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870           98 L-----SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        98 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (291)
                      .     ...|...+..+......+.                                    +.+.+...+++  +.+.|.
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~------------------------------------ig~Gg~~~rl~--TaS~D~  198 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQ------------------------------------IGSGGTNARLY--TASEDR  198 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEE------------------------------------ecCCCccceEE--EecCCc
Confidence            1     1111222222221111111                                    11333334444  777899


Q ss_pred             eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC----------
Q 022870          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG----------  242 (291)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~----------  242 (291)
                      ++++||+..+..+.++..             ...+.++. ..|.   ++ .+++|+++|.|.+.++....          
T Consensus       199 t~k~wdlS~g~LLlti~f-------------p~si~av~-lDpa---e~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~  260 (476)
T KOG0646|consen  199 TIKLWDLSLGVLLLTITF-------------PSSIKAVA-LDPA---ER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKG  260 (476)
T ss_pred             eEEEEEeccceeeEEEec-------------CCcceeEE-Eccc---cc-EEEecCCcceEEeeehhcCCcccccccccc
Confidence            999999999998888763             34566676 8887   33 89999999999999886422          


Q ss_pred             -----Cceeecccccc--ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          243 -----IPLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       243 -----~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                           .....+.+|.+  .|++++.+-||.+|++|+.||.+.|||+.+.++++++
T Consensus       261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL  315 (476)
T ss_pred             cccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence                 12455778988  9999999999999999999999999999999988765

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.8e-26  Score=183.01  Aligned_cols=241  Identities=17%  Similarity=0.230  Sum_probs=188.3

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEee-ecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~   95 (291)
                      ++..|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. |..  .|-+++|..    ..+.+|+.|+.|..+|++.
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~--rvg~laW~~----~~lssGsr~~~I~~~dvR~  289 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS--RVGSLAWNS----SVLSSGSRDGKILNHDVRI  289 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc--eeEEEeccC----ceEEEecCCCcEEEEEEec
Confidence            488999999999999999999999999999999999999988 664  499999986    7899999999999999998


Q ss_pred             CCCCCCCccccccceEEEEEeecccCcccee-ccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEe-cC
Q 022870           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVA-GE  169 (291)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-g~  169 (291)
                      .+....   .+..+....|.+.........+ ........+|+. ........+..|..    ++|+|-...+||+. |+
T Consensus       290 ~~~~~~---~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~-~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs  365 (484)
T KOG0305|consen  290 SQHVVS---TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG-LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS  365 (484)
T ss_pred             chhhhh---hhhcccceeeeeEECCCCCeeccCCCccceEeccC-CCccccEEEeccceeeeEeeeCCCccCceEEcCCC
Confidence            865442   2444555555544443332222 222334455555 22234444555655    99999998888864 45


Q ss_pred             CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc
Q 022870          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (291)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (291)
                      .|+.|++||..+++.+..+..             ...+.++. |++..  .+....-|..++.|.||+..+ .+++..+.
T Consensus       366 ~D~~i~fwn~~~g~~i~~vdt-------------gsQVcsL~-Wsk~~--kEi~sthG~s~n~i~lw~~ps-~~~~~~l~  428 (484)
T KOG0305|consen  366 ADRCIKFWNTNTGARIDSVDT-------------GSQVCSLI-WSKKY--KELLSTHGYSENQITLWKYPS-MKLVAELL  428 (484)
T ss_pred             cccEEEEEEcCCCcEeccccc-------------CCceeeEE-EcCCC--CEEEEecCCCCCcEEEEeccc-cceeeeec
Confidence            699999999999998887762             55788887 99983  232333456788999999998 88999999


Q ss_pred             ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      +|...|..++++|+|..+++|+.|.++++|++-..
T Consensus       429 gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  429 GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            99999999999999999999999999999998653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.6e-27  Score=185.41  Aligned_cols=246  Identities=17%  Similarity=0.240  Sum_probs=192.1

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ..++.++--.-||++..|-+.-+++++|+.|..|+||+.++++.++.++.|..-  |.+++.+|  ...+++++|.|-+|
T Consensus        46 tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy--IR~iavHP--t~P~vLtsSDDm~i  121 (794)
T KOG0276|consen   46 TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY--IRSIAVHP--TLPYVLTSSDDMTI  121 (794)
T ss_pred             eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc--eeeeeecC--CCCeEEecCCccEE
Confidence            446677777889999999998889999999999999999999999999999955  99999999  77899999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (291)
                      ++||.+..= .....++.+.+......+.+..........-.....+|.+.... ....+.+|..    +.|-+-|..-.
T Consensus       122 KlW~we~~w-a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpy  199 (794)
T KOG0276|consen  122 KLWDWENEW-ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPY  199 (794)
T ss_pred             EEeeccCce-eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcce
Confidence            999998652 22335555555555555555443333444445566677665443 3334557766    77766664433


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                      +++|+.|..+++||.++..|+++++        ||...    +..+. |+|.-+    ++++|++||+++||+..+ .+.
T Consensus       200 lIsgaDD~tiKvWDyQtk~CV~TLe--------GHt~N----vs~v~-fhp~lp----iiisgsEDGTvriWhs~T-y~l  261 (794)
T KOG0276|consen  200 LISGADDLTIKVWDYQTKSCVQTLE--------GHTNN----VSFVF-FHPELP----IIISGSEDGTVRIWNSKT-YKL  261 (794)
T ss_pred             EEecCCCceEEEeecchHHHHHHhh--------ccccc----ceEEE-ecCCCc----EEEEecCCccEEEecCcc-eeh
Confidence            4489999999999999999999999        88654    44444 999866    999999999999999988 777


Q ss_pred             eeeccccccceeEEEeecCCCeeEEecCCCeEEE
Q 022870          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL  278 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v  278 (291)
                      ...+...-+.|++++-.+.+..++.|.++|.|.+
T Consensus       262 E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  262 EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            7778777889999999888888888887776644

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=8.8e-27  Score=187.77  Aligned_cols=250  Identities=19%  Similarity=0.304  Sum_probs=188.2

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe----------------------------------
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW----------------------------------   57 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----------------------------------   57 (291)
                      .++.||+..|++++++.+...+++|+. +.+++|+..+.++++++.                                  
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~  445 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS  445 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence            356799999999999999877777754 689999999888777654                                  


Q ss_pred             ------eecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC---CCCcccccc---ceEEEEEeecccCccce
Q 022870           58 ------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS---SNPSLTIKT---NSYHFCKLSLVKEPYAN  125 (291)
Q Consensus        58 ------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~  125 (291)
                            .|.+.  |++++.+|  |+..+++||.|.+|++||..-....   ++..+.++.   ........+...+|...
T Consensus       446 l~Eti~AHdga--IWsi~~~p--D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  446 LVETIRAHDGA--IWSISLSP--DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK  521 (888)
T ss_pred             hhhhhhccccc--eeeeeecC--CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence                  56644  99999999  9999999999999999997522110   000111111   11122223333333322


Q ss_pred             ---eccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCC
Q 022870          126 ---AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN  198 (291)
Q Consensus       126 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  198 (291)
                         +..-.....++.++..+... .+.+|.-    +..+||+..++  +|+.|..|++|-+.-|.|-+.+-        +
T Consensus       522 ~LaVsLLdnTVkVyflDtlKFfl-sLYGHkLPV~smDIS~DSkliv--TgSADKnVKiWGLdFGDCHKS~f--------A  590 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLKFFL-SLYGHKLPVLSMDISPDSKLIV--TGSADKNVKIWGLDFGDCHKSFF--------A  590 (888)
T ss_pred             EEEEEeccCeEEEEEecceeeee-eecccccceeEEeccCCcCeEE--eccCCCceEEeccccchhhhhhh--------c
Confidence               22333445556665554333 4566655    78899987544  88999999999999999988887        6


Q ss_pred             CCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEE
Q 022870          199 FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL  278 (291)
Q Consensus       199 ~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v  278 (291)
                      |.    ..++++. |.|.   .. .+.+++.|+.|+-||-.. ...++.+.+|...|++++.+|+|.+++|+|.|.+|++
T Consensus       591 Hd----DSvm~V~-F~P~---~~-~FFt~gKD~kvKqWDg~k-Fe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRl  660 (888)
T KOG0306|consen  591 HD----DSVMSVQ-FLPK---TH-LFFTCGKDGKVKQWDGEK-FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRL  660 (888)
T ss_pred             cc----CceeEEE-Eccc---ce-eEEEecCcceEEeechhh-hhhheeeccchheeeeeEEcCCCCeEEeccCCceeEe
Confidence            74    4678888 9996   33 899999999999999988 8899999999999999999999999999999999999


Q ss_pred             EEcCCCcee
Q 022870          279 YNLDHSTVS  287 (291)
Q Consensus       279 w~~~~~~~~  287 (291)
                      |+.....++
T Consensus       661 wE~tde~~~  669 (888)
T KOG0306|consen  661 WERTDEILI  669 (888)
T ss_pred             eeccCccee
Confidence            998776554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=6.5e-27  Score=177.44  Aligned_cols=209  Identities=22%  Similarity=0.373  Sum_probs=170.4

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .+.+.+|+||...|+.+.|+|+...+++++.|-.|+||......+......|..+  |+.+..+|  .|.||++++.||+
T Consensus       251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~--V~~ls~h~--tgeYllsAs~d~~  326 (506)
T KOG0289|consen  251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEP--VTGLSLHP--TGEYLLSASNDGT  326 (506)
T ss_pred             hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccccc--ceeeeecc--CCcEEEEecCCce
Confidence            4678899999999999999999999999999999999999888888888888854  99999999  9999999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (291)
                      ..+.|++++....  ..........   +..                                   .+|+|||  +++.+
T Consensus       327 w~Fsd~~~g~~lt--~vs~~~s~v~---~ts-----------------------------------~~fHpDg--Lifgt  364 (506)
T KOG0289|consen  327 WAFSDISSGSQLT--VVSDETSDVE---YTS-----------------------------------AAFHPDG--LIFGT  364 (506)
T ss_pred             EEEEEccCCcEEE--EEeeccccce---eEE-----------------------------------eeEcCCc--eEEec
Confidence            9999999987533  1111101000   000                                   5599999  44558


Q ss_pred             cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (291)
                      |..|+.+++||+.++..+..|.        +|    .+.+.+++ |+.+   |+ +|+++++|+.|++||+|. .+...+
T Consensus       365 gt~d~~vkiwdlks~~~~a~Fp--------gh----t~~vk~i~-FsEN---GY-~Lat~add~~V~lwDLRK-l~n~kt  426 (506)
T KOG0289|consen  365 GTPDGVVKIWDLKSQTNVAKFP--------GH----TGPVKAIS-FSEN---GY-WLATAADDGSVKLWDLRK-LKNFKT  426 (506)
T ss_pred             cCCCceEEEEEcCCccccccCC--------CC----CCceeEEE-eccC---ce-EEEEEecCCeEEEEEehh-hcccce
Confidence            9999999999999998888887        77    55677777 9977   66 999999999999999997 566666


Q ss_pred             cccc-ccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          248 MKVH-LEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       248 ~~~h-~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      +... ...|.++.|++.|.+|+.++.|=.|++++
T Consensus       427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             eeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            5532 23799999999999999998887777766

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=8.9e-27  Score=190.97  Aligned_cols=205  Identities=24%  Similarity=0.394  Sum_probs=167.8

Q ss_pred             EEecC-CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEE-EeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           12 AVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        12 ~~l~~-h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      ..+.+ |...+.+..|.  +.++++++.|++|++||..++..+.. +.+|.+.  |.++++..  .+++|++|+.|.+++
T Consensus       201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~--V~~l~~~~--~~~~lvsgS~D~t~r  274 (537)
T KOG0274|consen  201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGG--VWGLAFPS--GGDKLVSGSTDKTER  274 (537)
T ss_pred             eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCC--ceeEEEec--CCCEEEEEecCCcEE
Confidence            34444 67788999998  44899999999999999999998888 9999955  99999987  679999999999999


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (291)
                      +||..++++..    .+..+......+                                        +-. +. ..++|+
T Consensus       275 vWd~~sg~C~~----~l~gh~stv~~~----------------------------------------~~~-~~-~~~sgs  308 (537)
T KOG0274|consen  275 VWDCSTGECTH----SLQGHTSSVRCL----------------------------------------TID-PF-LLVSGS  308 (537)
T ss_pred             eEecCCCcEEE----EecCCCceEEEE----------------------------------------Ecc-Cc-eEeecc
Confidence            99999998755    333222222211                                        112 22 333789


Q ss_pred             CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc
Q 022870          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (291)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (291)
                      .|.+|++|++.++.++..+.        +|    .+.+.++. ++-+      ++++|+.||.|++||..+ +++++.+.
T Consensus       309 ~D~tVkVW~v~n~~~l~l~~--------~h----~~~V~~v~-~~~~------~lvsgs~d~~v~VW~~~~-~~cl~sl~  368 (537)
T KOG0274|consen  309 RDNTVKVWDVTNGACLNLLR--------GH----TGPVNCVQ-LDEP------LLVSGSYDGTVKVWDPRT-GKCLKSLS  368 (537)
T ss_pred             CCceEEEEeccCcceEEEec--------cc----cccEEEEE-ecCC------EEEEEecCceEEEEEhhh-ceeeeeec
Confidence            99999999999999999988        66    55677776 6633      999999999999999998 99999999


Q ss_pred             ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC-ceeee
Q 022870          250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS-TVSHC  289 (291)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~-~~~~~  289 (291)
                      +|...|.++.+++. ..+++|+.|+.|++||+++. +++++
T Consensus       369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t  408 (537)
T KOG0274|consen  369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT  408 (537)
T ss_pred             CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence            99999999999885 58999999999999999998 66654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.3e-27  Score=173.69  Aligned_cols=245  Identities=16%  Similarity=0.188  Sum_probs=179.6

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +.++.|.||++.|+.++.......+.+++.|.+.+||.++++.|+..+.+|.+.  |.+++|++  .+.++++++.|++-
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS--VNsikfh~--s~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGS--VNSIKFHN--SGLLLLTASGDETA  214 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccc--eeeEEecc--ccceEEEccCCcch
Confidence            456778899999999999887779999999999999999999999999999966  99999999  88999999999999


Q ss_pred             EEEECCCCCCCCCCcc--ccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCc
Q 022870           89 KCWDIENGGLSSNPSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  162 (291)
                      .||...-.-...++..  .........+  +....+.      .......+-...+.+...+.+|..    ..|-..|..
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~--sDe~~~d------~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q  286 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEH--SDEHNRD------TDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ  286 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhc--ccccccc------cccccccCCceeeeeeeeeeccccceEehhhhcCcce
Confidence            9997332111000000  0000000000  0000000      000001111233445556677776    456677776


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                      ++  +++.|.+..+||+++++.+..+.        ||..+....     +-+|.   .+ ++++.+.|.+.++||.+..-
T Consensus       287 ~v--TaSWDRTAnlwDVEtge~v~~Lt--------GHd~ELtHc-----stHpt---Qr-LVvTsSrDtTFRLWDFReaI  347 (481)
T KOG0300|consen  287 MV--TASWDRTANLWDVETGEVVNILT--------GHDSELTHC-----STHPT---QR-LVVTSSRDTTFRLWDFREAI  347 (481)
T ss_pred             ee--eeeccccceeeeeccCceecccc--------Ccchhcccc-----ccCCc---ce-EEEEeccCceeEeccchhhc
Confidence            66  88999999999999999999998        886654332     25665   33 89999999999999999755


Q ss_pred             CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      ..+..|++|.+.|+++.|.-+.+ +++||+|.+|+|||+++-+
T Consensus       348 ~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  348 QSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR  389 (481)
T ss_pred             ceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence            67889999999999999987765 8999999999999998754

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.3e-25  Score=184.79  Aligned_cols=191  Identities=18%  Similarity=0.210  Sum_probs=142.9

Q ss_pred             ecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCC-CCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEE
Q 022870           36 GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFC  114 (291)
Q Consensus        36 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  114 (291)
                      |+.++.|++|+......+..+.+|...  |.+++|+|  + +++|++|+.||+|++||+.+......   .... .  ..
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~--V~~lafsP--~~~~lLASgS~DgtIrIWDi~t~~~~~~---~i~~-p--~~  119 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSS--ILDLQFNP--CFSEILASGSEDLTIRVWEIPHNDESVK---EIKD-P--QC  119 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCC--EEEEEEcC--CCCCEEEEEeCCCeEEEEECCCCCcccc---cccc-c--eE
Confidence            667899999998877788888888855  99999999  5 68999999999999999986432100   0000 0  00


Q ss_pred             EeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecc
Q 022870          115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (291)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~  190 (291)
                                                      .+.+|..    ++|+|++..+++ +++.|+.|++||+++++....+. 
T Consensus       120 --------------------------------~L~gH~~~V~sVaf~P~g~~iLa-SgS~DgtIrIWDl~tg~~~~~i~-  165 (568)
T PTZ00420        120 --------------------------------ILKGHKKKISIIDWNPMNYYIMC-SSGFDSFVNIWDIENEKRAFQIN-  165 (568)
T ss_pred             --------------------------------EeecCCCcEEEEEECCCCCeEEE-EEeCCCeEEEEECCCCcEEEEEe-
Confidence                                            0011111    779999877666 55669999999999988766654 


Q ss_pred             cccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEE-----eecCCC
Q 022870          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS-----IDESCN  265 (291)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~-----~~~~~~  265 (291)
                              |    ...+.++. |+|+   |. +|++++.|+.|+|||+++ ++.+..+.+|.+.+.+..     |++++.
T Consensus       166 --------~----~~~V~Sls-wspd---G~-lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~~~s~~v~~~~fs~d~~  227 (568)
T PTZ00420        166 --------M----PKKLSSLK-WNIK---GN-LLSGTCVGKHMHIIDPRK-QEIASSFHIHDGGKNTKNIWIDGLGGDDN  227 (568)
T ss_pred             --------c----CCcEEEEE-ECCC---CC-EEEEEecCCEEEEEECCC-CcEEEEEecccCCceeEEEEeeeEcCCCC
Confidence                    1    23577887 9998   44 899999999999999998 888889999987654433     358888


Q ss_pred             eeEEecCCC----eEEEEEcCC-Cceee
Q 022870          266 GGISGGADQ----KIVLYNLDH-STVSH  288 (291)
Q Consensus       266 ~l~s~s~dg----~i~vw~~~~-~~~~~  288 (291)
                      +|++++.|+    +|+|||++. ++.+.
T Consensus       228 ~IlTtG~d~~~~R~VkLWDlr~~~~pl~  255 (568)
T PTZ00420        228 YILSTGFSKNNMREMKLWDLKNTTSALV  255 (568)
T ss_pred             EEEEEEcCCCCccEEEEEECCCCCCceE
Confidence            999988774    799999995 44443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=2.2e-26  Score=174.56  Aligned_cols=208  Identities=15%  Similarity=0.243  Sum_probs=171.2

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~   98 (291)
                      ..++++...|....+++|+.|.++.++|...++.+..+++|...  |+.+.++|  +...+++++.|..|++|.......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kk--i~~v~~~~--~~~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKK--ITSVKFHK--DLDTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceE--EEEEEecc--chhheeecCCcceEEeeccccccC
Confidence            56888888887779999999999999999999999999999965  99999999  888999999999999999876553


Q ss_pred             CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD  178 (291)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd  178 (291)
                      ..  ....+..+...                                        +..+|.|++++  +++.|++..+.|
T Consensus       296 ~~--~~~~h~~~V~~----------------------------------------ls~h~tgeYll--sAs~d~~w~Fsd  331 (506)
T KOG0289|consen  296 PT--SSRPHEEPVTG----------------------------------------LSLHPTGEYLL--SASNDGTWAFSD  331 (506)
T ss_pred             cc--cccccccccee----------------------------------------eeeccCCcEEE--EecCCceEEEEE
Confidence            22  11111111111                                        44789999888  677799999999


Q ss_pred             CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEE
Q 022870          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL  258 (291)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~  258 (291)
                      ++++.++.....         . .......+.. |+||   |. +|.+|..||.|+|||+.+ +..+..|.+|.++|..+
T Consensus       332 ~~~g~~lt~vs~---------~-~s~v~~ts~~-fHpD---gL-ifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i  395 (506)
T KOG0289|consen  332 ISSGSQLTVVSD---------E-TSDVEYTSAA-FHPD---GL-IFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAI  395 (506)
T ss_pred             ccCCcEEEEEee---------c-cccceeEEee-EcCC---ce-EEeccCCCceEEEEEcCC-ccccccCCCCCCceeEE
Confidence            999988776652         1 1223456665 9999   44 999999999999999998 77899999999999999


Q ss_pred             EeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          259 SIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +|+.+|.+||++++|+.|++||++.-+..+++
T Consensus       396 ~FsENGY~Lat~add~~V~lwDLRKl~n~kt~  427 (506)
T KOG0289|consen  396 SFSENGYWLATAADDGSVKLWDLRKLKNFKTI  427 (506)
T ss_pred             EeccCceEEEEEecCCeEEEEEehhhccccee
Confidence            99999999999999999999999987766554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1.3e-26  Score=169.16  Aligned_cols=256  Identities=12%  Similarity=0.143  Sum_probs=185.5

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      .+++|-.|.++|+++.|+|....|++|+.|++|+++|+.+....+.++......+|.++.|+|  .|.+|+.|....+++
T Consensus       164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~r  241 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTLR  241 (430)
T ss_pred             eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC--CCceEEEecCCCcee
Confidence            478899999999999999999999999999999999998755444444444446799999999  999999999999999


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccC-ccceeccCCCCceeeecccCccccccCCCCCC-----cccCCCCCcE
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-PYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKY  163 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  163 (291)
                      +||+++.++..... .-..+....+.+..... .........+...+|+--..+.+...-..|.+     ..|..+++++
T Consensus       242 lYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi  320 (430)
T KOG0640|consen  242 LYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI  320 (430)
T ss_pred             EEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence            99999987643111 11111112222221111 12334455667788888777887777777776     7789999877


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe-ecCCCcEEEEEccCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYEDGSILVWDIRNPG  242 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~~dg~i~vwd~~~~~  242 (291)
                      +  +++.|..+++|.+.+++++..+...      |....+.-. +... |+...   . |++. --..+.+.-||.++..
T Consensus       321 L--sSG~DS~vkLWEi~t~R~l~~YtGA------g~tgrq~~r-tqAv-FNhtE---d-yVl~pDEas~slcsWdaRtad  386 (430)
T KOG0640|consen  321 L--SSGKDSTVKLWEISTGRMLKEYTGA------GTTGRQKHR-TQAV-FNHTE---D-YVLFPDEASNSLCSWDARTAD  386 (430)
T ss_pred             e--ecCCcceeeeeeecCCceEEEEecC------Ccccchhhh-hhhh-hcCcc---c-eEEccccccCceeeccccchh
Confidence            6  5667999999999999999988732      111211111 1122 77652   2 4444 3446789999999844


Q ss_pred             CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      +....-.+|.+.+..+.-+|.+..+++||.|-.+|+|--+
T Consensus       387 r~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  387 RVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            4434445899999999999999999999999999999654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.2e-27  Score=186.71  Aligned_cols=221  Identities=19%  Similarity=0.293  Sum_probs=163.6

Q ss_pred             Ccccee---EEEEcC-CCCEEEEecCCCeEEEEeCCCCe------EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870           17 HRASVT---DVCFHQ-TKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus        17 h~~~v~---~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      |...|.   .+..+. .+++|+|||.||.|++|++....      ...+++.|.  +.|..+....  +++.|+++|.|-
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs--DWVNDiiL~~--~~~tlIS~SsDt   95 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS--DWVNDIILCG--NGKTLISASSDT   95 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH--hHHhhHHhhc--CCCceEEecCCc
Confidence            555566   566664 66789999999999999976432      366777787  5599999988  889999999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (291)
                      +|++|+........  ..++..+.-....                                      +++-..... +++
T Consensus        96 TVK~W~~~~~~~~c--~stir~H~DYVkc--------------------------------------la~~ak~~~-lva  134 (735)
T KOG0308|consen   96 TVKVWNAHKDNTFC--MSTIRTHKDYVKC--------------------------------------LAYIAKNNE-LVA  134 (735)
T ss_pred             eEEEeecccCcchh--Hhhhhcccchhee--------------------------------------eeecccCce-eEE
Confidence            99999998764111  2233333222211                                      223122233 444


Q ss_pred             ecCCcCeEEEEeCCCc--ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          167 AGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                      +|+.|+.|.+||++++  +.+..+.........   ......+++++ .++.   |. .|++|+.++.|++||.++ .+.
T Consensus       135 SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~---sG~k~siYSLA-~N~t---~t-~ivsGgtek~lr~wDprt-~~k  205 (735)
T KOG0308|consen  135 SGGLDRKIFLWDINTGTATLVASFNNVTVNSLG---SGPKDSIYSLA-MNQT---GT-IIVSGGTEKDLRLWDPRT-CKK  205 (735)
T ss_pred             ecCCCccEEEEEccCcchhhhhhccccccccCC---CCCccceeeee-cCCc---ce-EEEecCcccceEEecccc-ccc
Confidence            7888999999999987  333333321111111   12345678886 8887   44 899999999999999999 888


Q ss_pred             eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeeeC
Q 022870          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCVI  291 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~~  291 (291)
                      +..++||...|..+..+++|..++++|.||+|++||+...+++++++
T Consensus       206 imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~  252 (735)
T KOG0308|consen  206 IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI  252 (735)
T ss_pred             eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence            89999999999999999999999999999999999999999998764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=5.8e-26  Score=189.81  Aligned_cols=258  Identities=16%  Similarity=0.195  Sum_probs=186.3

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC------------------CeEEEEEeeecCCcceEEEE
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------------HRTVSSSWVHSAAHGIVSVA   69 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~~~v~~~~   69 (291)
                      ++.+.+...|.+.|+|+.|+|||++||+|+.|+.|.||+...                  .+++..+.+|...  |..++
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D--V~Dv~  136 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD--VLDVN  136 (942)
T ss_pred             chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCc--cceec
Confidence            367888899999999999999999999999999999999762                  1367788899866  99999


Q ss_pred             EeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc---cccc
Q 022870           70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE---TVDT  146 (291)
Q Consensus        70 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  146 (291)
                      |+|  ++.+|++++.|++|.+||..+.+...  ++..+........+.+.+..... ..+.....+|......   .+..
T Consensus       137 Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~--vl~~H~s~VKGvs~DP~Gky~AS-qsdDrtikvwrt~dw~i~k~It~  211 (942)
T KOG0973|consen  137 WSP--DDSLLVSVSLDNSVIIWNAKTFELLK--VLRGHQSLVKGVSWDPIGKYFAS-QSDDRTLKVWRTSDWGIEKSITK  211 (942)
T ss_pred             cCC--CccEEEEecccceEEEEccccceeee--eeecccccccceEECCccCeeee-ecCCceEEEEEcccceeeEeecc
Confidence            999  99999999999999999999986644  33334444444445554443332 2334455666644422   2222


Q ss_pred             cCCCCCC------cccCCCCCcEEEEecCC--cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC--
Q 022870          147 DSLCDSK------DDVPAEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS--  216 (291)
Q Consensus       147 ~~~~~~~------~~~~~~~~~~~~~~g~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--  216 (291)
                      .+..-..      +.|+|||.++...-+-.  -..+.|.+-.+.+.-..+-        ||..    .+.++. |+|.  
T Consensus       212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv--------GH~~----p~evvr-FnP~lf  278 (942)
T KOG0973|consen  212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV--------GHSA----PVEVVR-FNPKLF  278 (942)
T ss_pred             chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee--------cCCC----ceEEEE-eChHHh
Confidence            2221111      99999998776432221  2347777776666666666        7844    566666 9984  


Q ss_pred             ------CCCCc-----eEEEeecCCCcEEEEEccCCCCceeecc-ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          217 ------KSQGF-----VNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       217 ------~~~g~-----~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                            +...+     ..+|+|+.|+.|.||.... .+|+.... -....|..++|+|||..|..+|.||+|.+..++..
T Consensus       279 e~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  279 ERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             ccccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence                  11111     1688999999999999977 66665443 34678999999999999999999999999999876


Q ss_pred             ce
Q 022870          285 TV  286 (291)
Q Consensus       285 ~~  286 (291)
                      .+
T Consensus       358 El  359 (942)
T KOG0973|consen  358 EL  359 (942)
T ss_pred             Hh
Confidence            54

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7.8e-25  Score=153.27  Aligned_cols=216  Identities=18%  Similarity=0.219  Sum_probs=160.4

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE-----EEEEeeecCCcceEEEEEee--cCCCCeEEE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-----VSSSWVHSAAHGIVSVATGP--SIGLNKVIS   81 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~--~~~~~~l~s   81 (291)
                      -..+.-+.|++.|+|.+|+|+|+++++|+.|.+|++-.++...+     -..+..|.+.  |..++|..  ...+..|++
T Consensus        80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgt--irdl~fld~~~s~~~il~s  157 (350)
T KOG0641|consen   80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGT--IRDLAFLDDPESGGAILAS  157 (350)
T ss_pred             EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCc--eeeeEEecCCCcCceEEEe
Confidence            34455667999999999999999999999999999987654322     2346677755  99999964  223456666


Q ss_pred             EeC-CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCC
Q 022870           82 QGR-DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG  160 (291)
Q Consensus        82 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (291)
                      ++. |..|++-|..+++-..    .+..+..+...                                       -++.++
T Consensus       158 ~gagdc~iy~tdc~~g~~~~----a~sghtghila---------------------------------------lyswn~  194 (350)
T KOG0641|consen  158 AGAGDCKIYITDCGRGQGFH----ALSGHTGHILA---------------------------------------LYSWNG  194 (350)
T ss_pred             cCCCcceEEEeecCCCCcce----eecCCcccEEE---------------------------------------EEEecC
Confidence            543 5556666666554322    33333322221                                       134444


Q ss_pred             CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCC-cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK-GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                       .++ ++|+.|.+|++||++-..++.++...      -|... ....+.+++ ..|.   |+ +|++|..|....+||++
T Consensus       195 -~m~-~sgsqdktirfwdlrv~~~v~~l~~~------~~~~glessavaav~-vdps---gr-ll~sg~~dssc~lydir  261 (350)
T KOG0641|consen  195 -AMF-ASGSQDKTIRFWDLRVNSCVNTLDND------FHDGGLESSAVAAVA-VDPS---GR-LLASGHADSSCMLYDIR  261 (350)
T ss_pred             -cEE-EccCCCceEEEEeeeccceeeeccCc------ccCCCcccceeEEEE-ECCC---cc-eeeeccCCCceEEEEee
Confidence             333 48999999999999999998887642      22221 234566665 8887   66 99999999999999999


Q ss_pred             CCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      . +++++.+..|...|.++.|+|...++.++|.|..|++-|++.
T Consensus       262 g-~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  262 G-GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             C-CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            7 899999999999999999999999999999999999999875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.7e-27  Score=191.12  Aligned_cols=240  Identities=19%  Similarity=0.272  Sum_probs=192.1

Q ss_pred             eeEEEEcC-CCCEEEEecCCCeEEEEeCCC---CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           21 VTDVCFHQ-TKPILFAGTTGGELRIWDTVQ---HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        21 v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      +..+.|+. +.++|||++..|.|.+||+..   .+.+..+..|...  +.++.|++. ..++|++||.||+|++||++..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs--~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERS--ANKLDFHST-EPNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccc--eeeeeeccC-CccEEEecCCCceEEEEeeecc
Confidence            45577876 667999999999999999987   5566678888865  999999986 4589999999999999999987


Q ss_pred             CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcC
Q 022870           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~  172 (291)
                      +...  .+...........+++..........+++.+..|+++........+..|.+    +.|+|++ .++| +|+.|+
T Consensus       167 ~S~~--t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lA-TGGRDK  242 (839)
T KOG0269|consen  167 KSKS--TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLA-TGGRDK  242 (839)
T ss_pred             cccc--cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-ceee-ecCCCc
Confidence            6544  344455566677778877777778889999999999999999999999988    8899965 4555 677999


Q ss_pred             eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec--CCCcEEEEEccCCCCceeeccc
Q 022870          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWDIRNPGIPLTAMKV  250 (291)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~  250 (291)
                      .|+|||+.+++......           .....++..+. |.|..+   +.|++++  .|-.|+|||++.+.-|...+..
T Consensus       243 ~vkiWd~t~~~~~~~~t-----------InTiapv~rVk-WRP~~~---~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e  307 (839)
T KOG0269|consen  243 MVKIWDMTDSRAKPKHT-----------INTIAPVGRVK-WRPARS---YHLATCSMVVDTSVHVWDVRRPYIPYATFLE  307 (839)
T ss_pred             cEEEEeccCCCccceeE-----------Eeecceeeeee-eccCcc---chhhhhhccccceEEEEeeccccccceeeec
Confidence            99999998765433222           11245677787 999854   3788776  4779999999988899999999


Q ss_pred             cccceeEEEe-ecCCCeeEEecCCCeEEEEEcC
Q 022870          251 HLEPVLCLSI-DESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       251 h~~~v~~~~~-~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      |...++.++| +.+...|.+++.||+|..-.++
T Consensus       308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  308 HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             cCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence            9999999999 5566688999999987654433

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=4e-25  Score=180.96  Aligned_cols=205  Identities=17%  Similarity=0.222  Sum_probs=152.9

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE-------------EEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-------------SSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      |-..|+....++++..+++++.+.....|+...+..+             ..+.+|..  +|.+++|+|. ++++|++|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~--~V~~v~fsP~-d~~~LaSgS   95 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEG--PIIDVAFNPF-DPQKLFTAS   95 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCC--CEEEEEEcCC-CCCEEEEEe
Confidence            4455677777778777888888888888886544322             13556764  4999999995 457999999


Q ss_pred             CCCeEEEEECCCCCCCC---CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----ccc
Q 022870           84 RDGTVKCWDIENGGLSS---NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV  156 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  156 (291)
                      .|++|++||+.+.....   .++..+                                          .+|..    ++|
T Consensus        96 ~DgtIkIWdi~~~~~~~~~~~~l~~L------------------------------------------~gH~~~V~~l~f  133 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQNISDPIVHL------------------------------------------QGHTKKVGIVSF  133 (493)
T ss_pred             CCCEEEEEecCCCccccccCcceEEe------------------------------------------cCCCCcEEEEEe
Confidence            99999999998653211   011111                                          12211    679


Q ss_pred             CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (291)
                      +|++..+++ +|+.|+.|++||+++++.+..+.        +|.    ..+.++. |+|+   |. +|++|+.|+.|++|
T Consensus       134 ~P~~~~iLa-Sgs~DgtVrIWDl~tg~~~~~l~--------~h~----~~V~sla-~spd---G~-lLatgs~Dg~IrIw  195 (493)
T PTZ00421        134 HPSAMNVLA-SAGADMVVNVWDVERGKAVEVIK--------CHS----DQITSLE-WNLD---GS-LLCTTSKDKKLNII  195 (493)
T ss_pred             CcCCCCEEE-EEeCCCEEEEEECCCCeEEEEEc--------CCC----CceEEEE-EECC---CC-EEEEecCCCEEEEE
Confidence            998766666 56679999999999998888777        563    3577787 9998   44 89999999999999


Q ss_pred             EccCCCCceeeccccccc-eeEEEeecCCCeeEEec----CCCeEEEEEcCCCc
Q 022870          237 DIRNPGIPLTAMKVHLEP-VLCLSIDESCNGGISGG----ADQKIVLYNLDHST  285 (291)
Q Consensus       237 d~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s----~dg~i~vw~~~~~~  285 (291)
                      |+++ ++.+..+.+|.+. +..+.|.+++..+++++    .|+.|++||+++..
T Consensus       196 D~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        196 DPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             ECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            9998 7888889898765 45678888877777654    47999999998654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=4.7e-27  Score=180.30  Aligned_cols=204  Identities=19%  Similarity=0.308  Sum_probs=148.2

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCC-CeEEEEeCCC
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDG   86 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg   86 (291)
                      .++++++.||..+|.+++|+++|..+++++.|+.+++||+++|+++..+...   ..++|+.|.|  ++ +.+++|+.|+
T Consensus       248 ~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~---~~~~cvkf~p--d~~n~fl~G~sd~  322 (503)
T KOG0282|consen  248 RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD---KVPTCVKFHP--DNQNIFLVGGSDK  322 (503)
T ss_pred             cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC---CCceeeecCC--CCCcEEEEecCCC
Confidence            5789999999999999999999999999999999999999999999988754   4589999999  66 8999999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeee-----------------------------
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYE-----------------------------  137 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  137 (291)
                      .|+.||+++++.+++  +.-+-.......|-.... ......+.....+|+                             
T Consensus       323 ki~~wDiRs~kvvqe--Yd~hLg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~  399 (503)
T KOG0282|consen  323 KIRQWDIRSGKVVQE--YDRHLGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW  399 (503)
T ss_pred             cEEEEeccchHHHHH--HHhhhhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe
Confidence            999999999986541  111111111111110000 001111111112221                             


Q ss_pred             --------------cccC--ccccccCCCCCC------cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCC
Q 022870          138 --------------REVG--ETVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG  195 (291)
Q Consensus       138 --------------~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~  195 (291)
                                    ....  ......+.+|..      +.|||||++++  +|+.||.+.+||.++-+.+..++      
T Consensus       400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~--SGdsdG~v~~wdwkt~kl~~~lk------  471 (503)
T KOG0282|consen  400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC--SGDSDGKVNFWDWKTTKLVSKLK------  471 (503)
T ss_pred             ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE--eecCCccEEEeechhhhhhhccc------
Confidence                          1111  112234455544      89999998766  89999999999999999998888      


Q ss_pred             CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (291)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (291)
                        +|    ..+|+.+. |+|..+.   .+|+++-||.|++||
T Consensus       472 --ah----~~~ci~v~-wHP~e~S---kvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  472 --AH----DQPCIGVD-WHPVEPS---KVATCGWDGLIKIWD  503 (503)
T ss_pred             --cC----CcceEEEE-ecCCCcc---eeEecccCceeEecC
Confidence              56    56788887 9998542   799999999999996

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.95  E-value=2e-26  Score=164.36  Aligned_cols=264  Identities=26%  Similarity=0.359  Sum_probs=180.5

Q ss_pred             CCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      +.||.|...|++|.+.|+++.|..++ +|++|..-|.|++|++.+...+..++.+.. .+|+.+.-.|  + +.+.+-+.
T Consensus         1 ~~pPdP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p--~-d~l~tqgR   75 (323)
T KOG0322|consen    1 MVPPDPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIP--N-DSLDTQGR   75 (323)
T ss_pred             CCCCCCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecC--C-cchhhcCC
Confidence            35678999999999999999998887 599999999999999999888877874443 5699999998  5 88999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccce---eccCC-CCce--eeecccCc---cccccCCCCCC--
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN---AKQAN-EPKD--CYEREVGE---TVDTDSLCDSK--  153 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~--~~~~~~~~---~~~~~~~~~~~--  153 (291)
                      |+.+.+|++.......  +..+..+...+|.++....+...   ..... +...  ..+.....   .......+..+  
T Consensus        76 d~~L~lw~ia~s~~i~--i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv  153 (323)
T KOG0322|consen   76 DPLLILWTIAYSAFIS--IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV  153 (323)
T ss_pred             CceEEEEEccCcceEE--EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence            9999999998765543  33344455566666655544322   00000 0000  00110000   00011111111  


Q ss_pred             cccC---CCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccC--CCCCCCCCc-------------------------
Q 022870          154 DDVP---AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG--GSPNFSSKG-------------------------  203 (291)
Q Consensus       154 ~~~~---~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~-------------------------  203 (291)
                      +++.   .++.++++.+|.++|.+.+||+.++..+..++.....  +...|..+.                         
T Consensus       154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S  233 (323)
T KOG0322|consen  154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS  233 (323)
T ss_pred             eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence            3333   4567788889999999999999987433322211000  000111100                         


Q ss_pred             -----------------ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCe
Q 022870          204 -----------------RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG  266 (291)
Q Consensus       204 -----------------~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  266 (291)
                                       +.-+..+. ..||   ++ ++|+++.|+.||||+.++ .+++..++.|.+.|++++|+|+..+
T Consensus       234 l~~s~gslq~~~e~~lknpGv~gvr-IRpD---~K-IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~l  307 (323)
T KOG0322|consen  234 LNHSTGSLQIRKEITLKNPGVSGVR-IRPD---GK-ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCEL  307 (323)
T ss_pred             eccccCcccccceEEecCCCccceE-EccC---Cc-EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCch
Confidence                             01122232 4454   55 999999999999999999 9999999999999999999999999


Q ss_pred             eEEecCCCeEEEEEc
Q 022870          267 GISGGADQKIVLYNL  281 (291)
Q Consensus       267 l~s~s~dg~i~vw~~  281 (291)
                      +|++|.|+.|.+|++
T Consensus       308 mAaaskD~rISLWkL  322 (323)
T KOG0322|consen  308 MAAASKDARISLWKL  322 (323)
T ss_pred             hhhccCCceEEeeec
Confidence            999999999999986

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.1e-25  Score=181.55  Aligned_cols=247  Identities=18%  Similarity=0.344  Sum_probs=178.6

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .+..++.||+..|+++.|...|..|++||.|+.|.+||+-...-+..+++|+..  |+..-|..  +.+.+++.+.|+.|
T Consensus        98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~--iT~~~F~~--~~~~lvS~sKDs~i  173 (888)
T KOG0306|consen   98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDS--ITQALFLN--GDSFLVSVSKDSMI  173 (888)
T ss_pred             ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHH--HhHHhccC--CCeEEEEeccCceE
Confidence            567789999999999999999999999999999999999877778888898855  99998888  77899999999999


Q ss_pred             EEEECCCCCCCCCCc---------------------------ccc-----------------------------------
Q 022870           89 KCWDIENGGLSSNPS---------------------------LTI-----------------------------------  106 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~---------------------------~~~-----------------------------------  106 (291)
                      ++||+++..+....+                           +.+                                   
T Consensus       174 K~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d  253 (888)
T KOG0306|consen  174 KFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD  253 (888)
T ss_pred             EEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence            999998776432000                           000                                   


Q ss_pred             ccceEEEEE-----------------------------------------------------------------eecccC
Q 022870          107 KTNSYHFCK-----------------------------------------------------------------LSLVKE  121 (291)
Q Consensus       107 ~~~~~~~~~-----------------------------------------------------------------~~~~~~  121 (291)
                      .......|.                                                                 +.+...
T Consensus       254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~  333 (888)
T KOG0306|consen  254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG  333 (888)
T ss_pred             CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence            000000000                                                                 000000


Q ss_pred             cc-ceeccCCCCceeeecccCc--------cccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEe
Q 022870          122 PY-ANAKQANEPKDCYEREVGE--------TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (291)
Q Consensus       122 ~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~  188 (291)
                      .. ...........++.+....        .....+.+|..    ++++.+.  .++.+|. .+.+++|+..+.++++++
T Consensus       334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~Sga-~~SikiWn~~t~kciRTi  410 (888)
T KOG0306|consen  334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS--ILLASGA-GESIKIWNRDTLKCIRTI  410 (888)
T ss_pred             cceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc--eeeeecC-CCcEEEEEccCcceeEEe
Confidence            00 0000111222333333211        11123445555    7777765  3333565 589999999999999999


Q ss_pred             cccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeE
Q 022870          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI  268 (291)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  268 (291)
                      .              .+.+.+.. |-|.+   + ++++|..+|.+.+||+.+ ...+...++|.+.|++++.+|++..++
T Consensus       411 ~--------------~~y~l~~~-Fvpgd---~-~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaIWsi~~~pD~~g~v  470 (888)
T KOG0306|consen  411 T--------------CGYILASK-FVPGD---R-YIVLGTKNGELQVFDLAS-ASLVETIRAHDGAIWSISLSPDNKGFV  470 (888)
T ss_pred             c--------------cccEEEEE-ecCCC---c-eEEEeccCCceEEEEeeh-hhhhhhhhccccceeeeeecCCCCceE
Confidence            8              33677776 99973   3 999999999999999998 888899999999999999999999999


Q ss_pred             EecCCCeEEEEEcC
Q 022870          269 SGGADQKIVLYNLD  282 (291)
Q Consensus       269 s~s~dg~i~vw~~~  282 (291)
                      +||.|.+|++||+.
T Consensus       471 T~saDktVkfWdf~  484 (888)
T KOG0306|consen  471 TGSADKTVKFWDFK  484 (888)
T ss_pred             EecCCcEEEEEeEE
Confidence            99999999999974

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=9.9e-26  Score=163.63  Aligned_cols=222  Identities=18%  Similarity=0.286  Sum_probs=143.7

Q ss_pred             cCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCC-CeEE-EEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        15 ~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      ...++.|.+|+||| ...+++.|+.||+||+|+++. +... +....|.  .||.+++|+.  ||..+++|+.|+.+++|
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~--~PvL~v~Wsd--dgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD--GPVLDVCWSD--DGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC--CCeEEEEEcc--CCceEEeeccCCceEEE
Confidence            35678999999999 555777999999999999986 3333 2334455  5699999999  99999999999999999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (291)
                      |+.+++...   ...+..+...+.                                        |-+...+-.+++|+.|
T Consensus       100 DL~S~Q~~~---v~~Hd~pvkt~~----------------------------------------wv~~~~~~cl~TGSWD  136 (347)
T KOG0647|consen  100 DLASGQVSQ---VAAHDAPVKTCH----------------------------------------WVPGMNYQCLVTGSWD  136 (347)
T ss_pred             EccCCCeee---eeecccceeEEE----------------------------------------EecCCCcceeEecccc
Confidence            999986432   233333333332                                        2222223344489999


Q ss_pred             CeEEEEeCCCcceeeEecccc--cCCCCCCCC-----------------------Ccce----eeeeEEEecCCCCCCce
Q 022870          172 SEVEIWDLNTAERCTRLHQNS--CGGSPNFSS-----------------------KGRG----MCMAVQAYLPSKSQGFV  222 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~-----------------------~~~~----~~~~~~~~~p~~~~g~~  222 (291)
                      ++|+.||+|+..++.++..+.  ......++.                       ....    .+.++++|. +   .+ 
T Consensus       137 KTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d---~~-  211 (347)
T KOG0647|consen  137 KTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-D---KD-  211 (347)
T ss_pred             cceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-c---CC-
Confidence            999999999988877765310  000000000                       0000    012232121 1   11 


Q ss_pred             EEEeecCCCcEEEEEccCCC-Cceeecccccc---------ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          223 NVLAGYEDGSILVWDIRNPG-IPLTAMKVHLE---------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~-~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      ..+.|+-+|.+.+..+..+. +.-..++-|..         .|++|+|+|.-..|+|++.||++.+||-+....+.
T Consensus       212 ~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk  287 (347)
T KOG0647|consen  212 GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK  287 (347)
T ss_pred             ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh
Confidence            23556666666666655411 22233444542         58899999998899999999999999988766554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=172.08  Aligned_cols=207  Identities=18%  Similarity=0.260  Sum_probs=160.8

Q ss_pred             ceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .++.+.+|+.+|....|+| ++..|++|+.|+.+++||+.+......+.+|...  |.|.+|+|. +++.++|||.||.|
T Consensus       102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY--VR~g~~~~~-~~hivvtGsYDg~v  178 (487)
T KOG0310|consen  102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY--VRCGDISPA-NDHIVVTGSYDGKV  178 (487)
T ss_pred             HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce--eEeeccccC-CCeEEEecCCCceE
Confidence            3567889999999999999 5667899999999999999988876678888855  999999995 34789999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      ++||++...   ..+.+++.......                                       +.+-|.|. +++++|
T Consensus       179 rl~DtR~~~---~~v~elnhg~pVe~---------------------------------------vl~lpsgs-~iasAg  215 (487)
T KOG0310|consen  179 RLWDTRSLT---SRVVELNHGCPVES---------------------------------------VLALPSGS-LIASAG  215 (487)
T ss_pred             EEEEeccCC---ceeEEecCCCceee---------------------------------------EEEcCCCC-EEEEcC
Confidence            999999764   11334443322222                                       33566665 455555


Q ss_pred             CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      +  ..+++||+-++........       .|    .-.++|+. +..+   +. .|++|+-|+.|++||+.+ .+.+..+
T Consensus       216 G--n~vkVWDl~~G~qll~~~~-------~H----~KtVTcL~-l~s~---~~-rLlS~sLD~~VKVfd~t~-~Kvv~s~  276 (487)
T KOG0310|consen  216 G--NSVKVWDLTTGGQLLTSMF-------NH----NKTVTCLR-LASD---ST-RLLSGSLDRHVKVFDTTN-YKVVHSW  276 (487)
T ss_pred             C--CeEEEEEecCCceehhhhh-------cc----cceEEEEE-eecC---Cc-eEeecccccceEEEEccc-eEEEEee
Confidence            4  7899999996654443331       34    44677776 7766   33 899999999999999877 7888888


Q ss_pred             cccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      .- .++|.+++.+|++..++.|-.||.+.+=+..
T Consensus       277 ~~-~~pvLsiavs~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  277 KY-PGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             ec-ccceeeEEecCCCceEEEecccceeeeehhh
Confidence            75 7899999999999999999999988776443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=9.4e-25  Score=155.60  Aligned_cols=238  Identities=12%  Similarity=0.150  Sum_probs=178.5

Q ss_pred             EecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      ..++|.+.|-.++|+| +..++++++.|.+|++||+..+++...+.....   =.-+.|+|  +|.+++.++.|..|...
T Consensus        59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e---ni~i~wsp--~g~~~~~~~kdD~it~i  133 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE---NINITWSP--DGEYIAVGNKDDRITFI  133 (313)
T ss_pred             cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc---ceEEEEcC--CCCEEEEecCcccEEEE
Confidence            4678999999999998 667899999999999999999999998876654   35788999  99999999999999999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCC-CCceeeecccCccccccCCCCCC----cccCCCCCcEEEE
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV  166 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  166 (291)
                      |.++.+......  .+. ......+.  ..........| +.+.+......+ ....+..|..    +.|+|+|+++.  
T Consensus       134 d~r~~~~~~~~~--~~~-e~ne~~w~--~~nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~GryfA--  205 (313)
T KOG1407|consen  134 DARTYKIVNEEQ--FKF-EVNEISWN--NSNDLFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGRYFA--  205 (313)
T ss_pred             Eecccceeehhc--ccc-eeeeeeec--CCCCEEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCceEe--
Confidence            999876544211  111 11222222  22333333333 444444443222 2334556655    89999998765  


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +|+.|..+.+||+...-+++.+.        .+    .-++..+. |+.+   |+ +||+|++|..|-|=++++ +..+.
T Consensus       206 ~GsADAlvSLWD~~ELiC~R~is--------Rl----dwpVRTlS-FS~d---g~-~lASaSEDh~IDIA~vet-Gd~~~  267 (313)
T KOG1407|consen  206 TGSADALVSLWDVDELICERCIS--------RL----DWPVRTLS-FSHD---GR-MLASASEDHFIDIAEVET-GDRVW  267 (313)
T ss_pred             eccccceeeccChhHhhhheeec--------cc----cCceEEEE-eccC---cc-eeeccCccceEEeEeccc-CCeEE
Confidence            78889999999999988888887        44    33456666 9987   66 999999999999999999 78788


Q ss_pred             eccccccceeEEEeecCCCeeEEecCC---------CeEEEEEcC
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGAD---------QKIVLYNLD  282 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~d---------g~i~vw~~~  282 (291)
                      .++ +.++-.+++|+|...+||-+++|         |.+++|-+.
T Consensus       268 eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  268 EIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             Eee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            876 68899999999999999876654         567776544

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=1.5e-25  Score=167.24  Aligned_cols=212  Identities=15%  Similarity=0.266  Sum_probs=158.5

Q ss_pred             ceEEecCCccceeEEEEcCCC--CEEEEecCCCeEEEEeCCC----------------CeEEEEEeeecCCcceEEEEEe
Q 022870           10 PVAVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQ----------------HRTVSSSWVHSAAHGIVSVATG   71 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~--~~l~s~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~~~v~~~~~~   71 (291)
                      .....-+|.+.++.+.-++-+  .+.++=+..|.|.|||+..                .+++.++.+|...  -+.+.|+
T Consensus       143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E--Gy~LdWS  220 (440)
T KOG0302|consen  143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE--GYGLDWS  220 (440)
T ss_pred             ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc--ceeeecc
Confidence            334455688888888887744  5667778899999999753                2457778888855  8999999


Q ss_pred             ecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCC
Q 022870           72 PSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD  151 (291)
Q Consensus        72 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (291)
                      |. ....|++|..-+.|++|...++.....                                           ...+.+|
T Consensus       221 p~-~~g~LlsGDc~~~I~lw~~~~g~W~vd-------------------------------------------~~Pf~gH  256 (440)
T KOG0302|consen  221 PI-KTGRLLSGDCVKGIHLWEPSTGSWKVD-------------------------------------------QRPFTGH  256 (440)
T ss_pred             cc-cccccccCccccceEeeeeccCceeec-------------------------------------------Ccccccc
Confidence            95 336788998889999999988654221                                           0112222


Q ss_pred             CC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee
Q 022870          152 SK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (291)
Q Consensus       152 ~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g  227 (291)
                      ..    ++|+|....+|++ ++-||+|+|||+|.+.....+...      +|    .+-+..+. |+-..+    +|++|
T Consensus       257 ~~SVEDLqWSptE~~vfaS-cS~DgsIrIWDiRs~~~~~~~~~k------Ah----~sDVNVIS-Wnr~~~----lLasG  320 (440)
T KOG0302|consen  257 TKSVEDLQWSPTEDGVFAS-CSCDGSIRIWDIRSGPKKAAVSTK------AH----NSDVNVIS-WNRREP----LLASG  320 (440)
T ss_pred             ccchhhhccCCccCceEEe-eecCceEEEEEecCCCccceeEee------cc----CCceeeEE-ccCCcc----eeeec
Confidence            22    7899999988884 556999999999998432222111      45    33555565 987643    89999


Q ss_pred             cCCCcEEEEEccC--CCCceeeccccccceeEEEeecC-CCeeEEecCCCeEEEEEcCC
Q 022870          228 YEDGSILVWDIRN--PGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       228 ~~dg~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~  283 (291)
                      +.||+++|||+|+  .+++++.++.|..+|++|.|+|. ...|+++|.|.+|.+||+.-
T Consensus       321 ~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  321 GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            9999999999985  25789999999999999999874 34678888999999999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5e-26  Score=160.57  Aligned_cols=217  Identities=14%  Similarity=0.167  Sum_probs=162.6

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC---eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      .-..|++.|..+...-.|..|||++.|++|+|+.+++.   +.+.++.+|.++  |+.++|....-|.+|++++.||.|.
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GP--Vwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGP--VWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCC--eeEEeecccccCcEeeEeecCceEE
Confidence            34579999999988888999999999999999998753   577889999955  9999997544679999999999999


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (291)
                      ||.-++++..+......+......                                        ++|.|.+--+++++++
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNs----------------------------------------V~wapheygl~Lacas  123 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNS----------------------------------------VAWAPHEYGLLLACAS  123 (299)
T ss_pred             EEecCCCchhhhhhhhhhccccee----------------------------------------ecccccccceEEEEee
Confidence            999988854331122222211111                                        5577877777777888


Q ss_pred             CcCeEEEEeCCCc-c-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCC----------ceEEEeecCCCcEEEEE
Q 022870          170 QLSEVEIWDLNTA-E-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG----------FVNVLAGYEDGSILVWD  237 (291)
Q Consensus       170 ~d~~i~~wd~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g----------~~~l~~g~~dg~i~vwd  237 (291)
                      .||.|.+.+.+.. . ....+..       .|.    --+.++. |.|....|          -..|++|+.|..|+||+
T Consensus       124 SDG~vsvl~~~~~g~w~t~ki~~-------aH~----~GvnsVs-wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~  191 (299)
T KOG1332|consen  124 SDGKVSVLTYDSSGGWTTSKIVF-------AHE----IGVNSVS-WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWK  191 (299)
T ss_pred             CCCcEEEEEEcCCCCccchhhhh-------ccc----cccceee-ecCcCCCccccccCcccccceeeccCCccceeeee
Confidence            9999999998765 2 1222221       453    3455665 88763322          12699999999999999


Q ss_pred             ccCCC-CceeeccccccceeEEEeecCC----CeeEEecCCCeEEEEEcCC
Q 022870          238 IRNPG-IPLTAMKVHLEPVLCLSIDESC----NGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       238 ~~~~~-~~~~~~~~h~~~v~~~~~~~~~----~~l~s~s~dg~i~vw~~~~  283 (291)
                      ..+.. .....|.+|.+.|..++|.|.-    .++|++|.||++.||..+.
T Consensus       192 ~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  192 FDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             cCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence            98732 2334589999999999998753    4689999999999998763

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=7.6e-25  Score=167.35  Aligned_cols=246  Identities=16%  Similarity=0.233  Sum_probs=178.8

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEE-E-----------------eeecCCcceEEEEEee
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-S-----------------WVHSAAHGIVSVATGP   72 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~-----------------~~~~~~~~v~~~~~~~   72 (291)
                      +..+..|.-+|.+++++|++.+.++++.||+|.-|++.+++.... +                 +.|.  ..+.+++.++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~--keil~~avS~  212 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV--KEILTLAVSS  212 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc--ceeEEEEEcC
Confidence            677888999999999999999999999999999999988764311 1                 1344  4499999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC
Q 022870           73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS  152 (291)
Q Consensus        73 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (291)
                        |+.+|++|+.|..|.||+.++.+.+.  .+..+........|.-. ..............+|.++....+. .+.+|+
T Consensus       213 --Dgkylatgg~d~~v~Iw~~~t~ehv~--~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~ve-tlyGHq  286 (479)
T KOG0299|consen  213 --DGKYLATGGRDRHVQIWDCDTLEHVK--VFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVE-TLYGHQ  286 (479)
T ss_pred             --CCcEEEecCCCceEEEecCcccchhh--cccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHH-HHhCCc
Confidence              99999999999999999999987654  33333333333333221 1223344555667777776655444 455666


Q ss_pred             C--cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC
Q 022870          153 K--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (291)
Q Consensus       153 ~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (291)
                      .  +.++.-...-+++.|..|+++++|++..... ..+.        ++    .+.+-+++ |-.+    . .+++|+.|
T Consensus       287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifr--------g~----~~sidcv~-~In~----~-HfvsGSdn  347 (479)
T KOG0299|consen  287 DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFR--------GG----EGSIDCVA-FIND----E-HFVSGSDN  347 (479)
T ss_pred             cceeeechhcccceEEeccccceeEEEeccccce-eeee--------CC----CCCeeeEE-Eecc----c-ceeeccCC
Confidence            6  5555555555666888899999999954433 2333        34    33444454 5543    1 79999999


Q ss_pred             CcEEEEEccCCCCceeecc-cc-----------ccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          231 GSILVWDIRNPGIPLTAMK-VH-----------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~-~h-----------~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      |.|.+|++.. .+|+.+.+ +|           ..+|++++.-|...++++||.+|.|++|.++.+
T Consensus       348 G~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  348 GSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ceEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            9999999987 77766543 22           228999999999999999999999999999987

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=4e-26  Score=176.80  Aligned_cols=206  Identities=17%  Similarity=0.253  Sum_probs=151.3

Q ss_pred             EecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEE-EEEee---ecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870           13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTV-SSSWV---HSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .-+||...++|.+|+| +...++|++.||++||||+++.+.. ..++.   ....-++++++|+|  ++..|++|+.||+
T Consensus       263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGS  340 (641)
T KOG0772|consen  263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGS  340 (641)
T ss_pred             ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCc
Confidence            4579999999999999 4568899999999999999875432 22221   12224689999999  9999999999999


Q ss_pred             EEEEECCCCCCCCCCccccccc-e---EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           88 VKCWDIENGGLSSNPSLTIKTN-S---YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                      |.+|+......  .+.+.+... .   ...+                                       ++|+++|++|
T Consensus       341 IQ~W~~~~~~v--~p~~~vk~AH~~g~~Its---------------------------------------i~FS~dg~~L  379 (641)
T KOG0772|consen  341 IQIWDKGSRTV--RPVMKVKDAHLPGQDITS---------------------------------------ISFSYDGNYL  379 (641)
T ss_pred             eeeeecCCccc--ccceEeeeccCCCCceeE---------------------------------------EEeccccchh
Confidence            99999854322  112111110 0   0001                                       6799999887


Q ss_pred             EEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC------CCcEEEE
Q 022870          164 MAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE------DGSILVW  236 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~------dg~i~vw  236 (291)
                      +  +-+.|+++++||+++.+ ++....        +....  -.-+.+ +|+|+.   + +|++|+.      .|.+.+|
T Consensus       380 l--SRg~D~tLKvWDLrq~kkpL~~~t--------gL~t~--~~~tdc-~FSPd~---k-li~TGtS~~~~~~~g~L~f~  442 (641)
T KOG0772|consen  380 L--SRGFDDTLKVWDLRQFKKPLNVRT--------GLPTP--FPGTDC-CFSPDD---K-LILTGTSAPNGMTAGTLFFF  442 (641)
T ss_pred             h--hccCCCceeeeeccccccchhhhc--------CCCcc--CCCCcc-ccCCCc---e-EEEecccccCCCCCceEEEE
Confidence            7  67779999999999865 343333        22111  112233 499984   3 8888863      5789999


Q ss_pred             EccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEE
Q 022870          237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY  279 (291)
Q Consensus       237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  279 (291)
                      |..+ ...++.+......|..+.|+|.-+.|..|+.||.+++|
T Consensus       443 d~~t-~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  443 DRMT-LDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             eccc-eeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence            9998 77888887778899999999999999999999999986

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.9e-26  Score=183.05  Aligned_cols=220  Identities=21%  Similarity=0.333  Sum_probs=173.4

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC--eEEEEEeeecCCcceEEEEE-eecCCCCeEEEEeCCC
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVAT-GPSIGLNKVISQGRDG   86 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~~~dg   86 (291)
                      .+.+++.|.+.|+.+....+++.|++++.|-+|++|+...+  -+..++..|..-  |.|+++ .+  +..++++||.|+
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY--Vkcla~~ak--~~~lvaSgGLD~  140 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY--VKCLAYIAK--NNELVASGGLDR  140 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch--heeeeeccc--CceeEEecCCCc
Confidence            47789999999999999999999999999999999999877  577788889855  999999 55  667899999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (291)
                      .|.+||++++....  +...........             ..+....+|.                ++.++.| .++ +
T Consensus       141 ~IflWDin~~~~~l--~~s~n~~t~~sl-------------~sG~k~siYS----------------LA~N~t~-t~i-v  187 (735)
T KOG0308|consen  141 KIFLWDINTGTATL--VASFNNVTVNSL-------------GSGPKDSIYS----------------LAMNQTG-TII-V  187 (735)
T ss_pred             cEEEEEccCcchhh--hhhccccccccC-------------CCCCccceee----------------eecCCcc-eEE-E
Confidence            99999999873210  101111000000             0011111111                5566776 333 4


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +|+..+.+++||.++.+.+..+.        ||....+.    +. .+++   |. .+++++.||+|++||+.. .+++.
T Consensus       188 sGgtek~lr~wDprt~~kimkLr--------GHTdNVr~----ll-~~dD---Gt-~~ls~sSDgtIrlWdLgq-QrCl~  249 (735)
T KOG0308|consen  188 SGGTEKDLRLWDPRTCKKIMKLR--------GHTDNVRV----LL-VNDD---GT-RLLSASSDGTIRLWDLGQ-QRCLA  249 (735)
T ss_pred             ecCcccceEEeccccccceeeee--------ccccceEE----EE-EcCC---CC-eEeecCCCceEEeeeccc-cceee
Confidence            78889999999999999999998        89765444    33 7776   55 899999999999999998 89999


Q ss_pred             eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      ++..|...|+++..+|+-..+.+|+.||.|..=|+++.
T Consensus       250 T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  250 TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            99999999999999999999999999999999999885

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=5.9e-25  Score=167.94  Aligned_cols=248  Identities=14%  Similarity=0.176  Sum_probs=177.6

Q ss_pred             cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        15 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~   94 (291)
                      ++|.+.|.+++.++||++||+|+.|..|.||+..+.+.++.+.+|.+.  |.+++|-.  ..+.|++++.|++|++|+++
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~--V~~L~fr~--gt~~lys~s~Drsvkvw~~~  274 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGA--VSSLAFRK--GTSELYSASADRSVKVWSID  274 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccc--eeeeeeec--CccceeeeecCCceEEEehh
Confidence            489999999999999999999999999999999999999999999966  99999998  77899999999999999999


Q ss_pred             CCCCCCCCccccccceEEEEEeeccc-CccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecC
Q 022870           95 NGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE  169 (291)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~  169 (291)
                      ....+.    ++..++.....+.... ..+..+........+|.+.......  +.++..    ++|-.+. +++  +|+
T Consensus       275 ~~s~ve----tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli--frg~~~sidcv~~In~~-Hfv--sGS  345 (479)
T KOG0299|consen  275 QLSYVE----TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI--FRGGEGSIDCVAFINDE-HFV--SGS  345 (479)
T ss_pred             HhHHHH----HHhCCccceeeechhcccceEEeccccceeEEEeccccceee--eeCCCCCeeeEEEeccc-cee--ecc
Confidence            876543    4444444333333322 2233344455666777773332222  223322    6666554 444  799


Q ss_pred             CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC---Ccee
Q 022870          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG---IPLT  246 (291)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~---~~~~  246 (291)
                      .||.|.+|++...+++.+................+.++++++ ..|...    ++++|+.+|.|++|-+..+.   .++.
T Consensus       346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla-~i~~sd----L~asGS~~G~vrLW~i~~g~r~i~~l~  420 (479)
T KOG0299|consen  346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLA-VIPGSD----LLASGSWSGCVRLWKIEDGLRAINLLY  420 (479)
T ss_pred             CCceEEEeeecccCceeEeeccccccCCccccccccceeeeE-ecccCc----eEEecCCCCceEEEEecCCccccceee
Confidence            999999999999999888775211100000011123788887 777633    99999999999999998753   4455


Q ss_pred             eccccccceeEEEeecCCCeeE-EecCCCeEEEEEc
Q 022870          247 AMKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNL  281 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~vw~~  281 (291)
                      .+. -.+.|++++|+++|+.++ ..+....+--|-.
T Consensus       421 ~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  421 SLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             ecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence            555 478999999999999554 4455555555543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.2e-24  Score=153.67  Aligned_cols=232  Identities=20%  Similarity=0.242  Sum_probs=162.5

Q ss_pred             CCceEEecCCccceeEEEEcC--CCCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870            8 PDPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      .+++.+|.||+++|..++|..  .|.+||+++.||.|.||.-++++  .......|...  |.+++|.|..-|-.|++++
T Consensus        46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~S--VNsV~wapheygl~Lacas  123 (299)
T KOG1332|consen   46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSAS--VNSVAWAPHEYGLLLACAS  123 (299)
T ss_pred             ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhccc--ceeecccccccceEEEEee
Confidence            378899999999999999976  89999999999999999987774  34445567744  9999999976667899999


Q ss_pred             CCCeEEEEECCCC-CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCC-C
Q 022870           84 RDGTVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG-P  161 (291)
Q Consensus        84 ~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  161 (291)
                      .||.|.+.+.+.. ......+...+........+.+...+...                            +.-.|.. .
T Consensus       124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~----------------------------~~~~~~~~~  175 (299)
T KOG1332|consen  124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL----------------------------VDQGPAAKV  175 (299)
T ss_pred             CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc----------------------------cccCccccc
Confidence            9999999998866 22221122222222222222222111000                            0011111 1


Q ss_pred             cEEEEecCCcCeEEEEeCCCcc--eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          162 KYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      +-|+ +|+.|..|+||+..+.+  ...++.        +|.    ..+..++ |.|...-.+.+|+++++||++.||-.+
T Consensus       176 krlv-SgGcDn~VkiW~~~~~~w~~e~~l~--------~H~----dwVRDVA-waP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  176 KRLV-SGGCDNLVKIWKFDSDSWKLERTLE--------GHK----DWVRDVA-WAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ceee-ccCCccceeeeecCCcchhhhhhhh--------hcc----hhhhhhh-hccccCCCceeeEEecCCCcEEEEEec
Confidence            2344 66679999999998763  223344        664    4566665 999865566699999999999999887


Q ss_pred             CCCCc--eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          240 NPGIP--LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       240 ~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      ....+  ...+......++.+.|+..|+.|+.++.|+.|.+|.-+.
T Consensus       242 ~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  242 EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             CccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            42222  223444567899999999999999999999999998664

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=9.3e-25  Score=159.70  Aligned_cols=258  Identities=14%  Similarity=0.125  Sum_probs=176.2

Q ss_pred             CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      .|.+...+|+. .. ..|+.|++.|.+||.|+.||.|.|||+.+...-+.+.+|..+  |.+++|++  +|+.|+|+|.|
T Consensus        13 ~PEel~~tld~-~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p--i~sl~WS~--dgr~LltsS~D   86 (405)
T KOG1273|consen   13 YPEELTHTLDN-PL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP--ITSLCWSR--DGRKLLTSSRD   86 (405)
T ss_pred             ChHhhceeccC-Cc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccc--eeEEEecC--CCCEeeeecCC
Confidence            45566677773 33 799999999999999999999999999999888888999855  99999999  99999999999


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc--ccccCCCCCC-----cccCC
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--VDTDSLCDSK-----DDVPA  158 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~  158 (291)
                      ..|.+||+..+....+..  + ..+...+.+.+.......+...........+.+...  ....-.+...     ..|.+
T Consensus        87 ~si~lwDl~~gs~l~rir--f-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr  163 (405)
T KOG1273|consen   87 WSIKLWDLLKGSPLKRIR--F-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR  163 (405)
T ss_pred             ceeEEEeccCCCceeEEE--c-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC
Confidence            999999999987654211  1 122333334444333333333333333333332111  1111111111     34888


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (291)
                      .|++++  +|...|.+.+||..+.+++..++.        ..   ...+-.+. |+-.   |+ +|+.-+.|..||.|++
T Consensus       164 ~g~yIi--tGtsKGkllv~~a~t~e~vas~ri--------ts---~~~IK~I~-~s~~---g~-~liiNtsDRvIR~ye~  225 (405)
T KOG1273|consen  164 RGKYII--TGTSKGKLLVYDAETLECVASFRI--------TS---VQAIKQII-VSRK---GR-FLIINTSDRVIRTYEI  225 (405)
T ss_pred             CCCEEE--EecCcceEEEEecchheeeeeeee--------ch---heeeeEEE-Eecc---Cc-EEEEecCCceEEEEeh
Confidence            898877  677789999999999999988873        11   12233333 5544   55 9999999999999998


Q ss_pred             cCCC------C--ceeeccc--cccceeEEEeecCCCeeEEecC-CCeEEEEEcCCCceeeee
Q 022870          239 RNPG------I--PLTAMKV--HLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       239 ~~~~------~--~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~-dg~i~vw~~~~~~~~~~~  290 (291)
                      +...      .  +.+.++.  ....=.+++|+.+|.|+++++. ...++||+-..|.+++.+
T Consensus       226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence            7311      1  1222221  1223356788999999987774 467999999999888754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.2e-24  Score=158.42  Aligned_cols=258  Identities=16%  Similarity=0.185  Sum_probs=169.2

Q ss_pred             cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC----CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        15 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      .+|.+-|+++.|.+.|+.+|+|+.|++|+|||.++    -.+....+.|.+.  |..+.|.+..=|+.+++++.|+++.|
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~S--i~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGS--IWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCc--EEEEEecCccccceEEEEecCCceee
Confidence            47999999999999999999999999999999654    3567778889866  99999987656789999999999999


Q ss_pred             EECCCCCCCC-----CCcccc--ccceEEEEEeecccCccce-eccCCCCceeeeccc-Cccccc----c------CC--
Q 022870           91 WDIENGGLSS-----NPSLTI--KTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREV-GETVDT----D------SL--  149 (291)
Q Consensus        91 wd~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~----~------~~--  149 (291)
                      |.-.......     ....++  .........|.+....... .....+.+++|..-. ......    .      .+  
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            9753221111     001112  2223333444444433322 333444555553321 111110    1      11  


Q ss_pred             CCCC---cccCCCC--CcEEEEecCCc-----CeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCC
Q 022870          150 CDSK---DDVPAEG--PKYMAVAGEQL-----SEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (291)
Q Consensus       150 ~~~~---~~~~~~~--~~~~~~~g~~d-----~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  218 (291)
                      .++.   +.|+|..  +.+++ .|+.+     +.++||....+. .......     +.+|    ..++.+++ |.|+..
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iA-vgs~e~a~~~~~~~Iye~~e~~rKw~kva~-----L~d~----~dpI~di~-wAPn~G  236 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIA-VGSDEDAPHLNKVKIYEYNENGRKWLKVAE-----LPDH----TDPIRDIS-WAPNIG  236 (361)
T ss_pred             ccCcceEEeeccccccCceEE-EEcccCCccccceEEEEecCCcceeeeehh-----cCCC----CCcceeee-eccccC
Confidence            1222   6666532  33455 45533     368888765433 2222210     1144    55777887 999865


Q ss_pred             CCceEEEeecCCCcEEEEEccCCC-------------------CceeeccccccceeEEEeecCCCeeEEecCCCeEEEE
Q 022870          219 QGFVNVLAGYEDGSILVWDIRNPG-------------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY  279 (291)
Q Consensus       219 ~g~~~l~~g~~dg~i~vwd~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  279 (291)
                      ...+.||+++.|| |+||.++...                   +.+..+.+|.+.|+.+.|+-.|..|++.|.||+||+|
T Consensus       237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW  315 (361)
T KOG2445|consen  237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW  315 (361)
T ss_pred             CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence            5556899999999 9999998311                   1345677899999999999999999999999999999


Q ss_pred             EcCCCce
Q 022870          280 NLDHSTV  286 (291)
Q Consensus       280 ~~~~~~~  286 (291)
                      ..+-..+
T Consensus       316 kany~n~  322 (361)
T KOG2445|consen  316 KANYNNL  322 (361)
T ss_pred             hhhhhhh
Confidence            8764443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=2.7e-25  Score=178.77  Aligned_cols=249  Identities=16%  Similarity=0.167  Sum_probs=181.9

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC-CCCeEEEEeCCCeEEEEECC
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~   94 (291)
                      +.+-.+++++.+|+|++||+|..-|+++||++.+-+....++.|..+  |.|+.|+... ...+|++++.|.-|.+||+.
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE--ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESE--ILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccce--eEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            45678999999999999999999999999999988888889999966  9999998521 23578899999999999997


Q ss_pred             CCCCCCCCccccccc--eEEEEEeecccCccceeccCCCCceeeecccCccccccCC------CCCC---cccCCCCCcE
Q 022870           95 NGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL------CDSK---DDVPAEGPKY  163 (291)
Q Consensus        95 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~  163 (291)
                      ..-..   +.++..+  ......|...................++......--..+.      ++..   ++..|..+++
T Consensus       535 rny~l---~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v  611 (1080)
T KOG1408|consen  535 RNYDL---VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV  611 (1080)
T ss_pred             cccch---hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence            65322   2234333  3333333332222211111112222222221111011111      1111   7888888765


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      +  +++.|+.|+|||+.+++..+.|+.        -.. ..+....+. ..|.   |. ||++.+.|.++.++|..+ ++
T Consensus       612 ~--t~cQDrnirif~i~sgKq~k~FKg--------s~~-~eG~lIKv~-lDPS---gi-Y~atScsdktl~~~Df~s-gE  674 (1080)
T KOG1408|consen  612 V--TVCQDRNIRIFDIESGKQVKSFKG--------SRD-HEGDLIKVI-LDPS---GI-YLATSCSDKTLCFVDFVS-GE  674 (1080)
T ss_pred             E--EEecccceEEEeccccceeeeecc--------ccc-CCCceEEEE-ECCC---cc-EEEEeecCCceEEEEecc-ch
Confidence            5  677899999999999999999983        222 245566676 8887   44 999999999999999999 99


Q ss_pred             ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      ++..+.||...|+++.|.+|.+.|++.+.||.|.||.+.....
T Consensus       675 cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mi  717 (1080)
T KOG1408|consen  675 CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMI  717 (1080)
T ss_pred             hhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHh
Confidence            9999999999999999999999999999999999999876443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=6.5e-25  Score=159.43  Aligned_cols=241  Identities=17%  Similarity=0.259  Sum_probs=168.2

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      +....|.++|.+++|+.||..+++|+.|+.+++||+.+++ +..+..|..  +|.++.|.+......|+|||.|++|+.|
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~--pvkt~~wv~~~~~~cl~TGSWDKTlKfW  142 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDA--PVKTCHWVPGMNYQCLVTGSWDKTLKFW  142 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeeccc--ceeEEEEecCCCcceeEecccccceeec
Confidence            3455699999999999999999999999999999999985 456778884  4999999982222388999999999999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-----cccCCCCCcEEEE
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAV  166 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  166 (291)
                      |.+....+.    ++.-.....+  .....+...+......+.++.++..............     ++...+.+..+  
T Consensus       143 D~R~~~pv~----t~~LPeRvYa--~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a--  214 (347)
T KOG0647|consen  143 DTRSSNPVA----TLQLPERVYA--ADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA--  214 (347)
T ss_pred             ccCCCCeee----eeeccceeee--hhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE--
Confidence            999765433    2222211111  1222344555566667777777655433322222222     66666666554  


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      -|+-+|.+.+..+..+.+...|...|...... ....--.+.+++ |+|..  |  .|++++.||...+||-.. ...+.
T Consensus       215 lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~-~~~~VYaVNsi~-FhP~h--g--tlvTaGsDGtf~FWDkda-r~kLk  287 (347)
T KOG0647|consen  215 LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS-VNDDVYAVNSIA-FHPVH--G--TLVTAGSDGTFSFWDKDA-RTKLK  287 (347)
T ss_pred             eeeecceEEEEecCCCCccCceeEEEeccCCC-CCCceEEecceE-eeccc--c--eEEEecCCceEEEecchh-hhhhh
Confidence            47778999999998874444444333221111 111123455676 99974  3  799999999999999887 78888


Q ss_pred             eccccccceeEEEeecCCCeeEEe
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISG  270 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~  270 (291)
                      ....|..+|++.+|+.+|.++|-+
T Consensus       288 ~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  288 TSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ccCcCCCccceeEecCCCCEEEEE
Confidence            888899999999999999988643

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=7.5e-25  Score=159.50  Aligned_cols=202  Identities=19%  Similarity=0.288  Sum_probs=138.1

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      ..+.|..+.|+|....|+.++.||++++||+........++ |.  .|+.+++|.+  + ..+++|+.||.|+.+|+.++
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~--~plL~c~F~d--~-~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HG--APLLDCAFAD--E-STIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cC--CceeeeeccC--C-ceEEEeccCceEEEEEecCC
Confidence            47889999999988889889999999999998876655554 55  5599999998  5 89999999999999999988


Q ss_pred             CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  176 (291)
                      ....    .........+                                       +.+++....++  +|+.|++|++
T Consensus        86 ~~~~----igth~~~i~c---------------------------------------i~~~~~~~~vI--sgsWD~~ik~  120 (323)
T KOG1036|consen   86 NEDQ----IGTHDEGIRC---------------------------------------IEYSYEVGCVI--SGSWDKTIKF  120 (323)
T ss_pred             ccee----eccCCCceEE---------------------------------------EEeeccCCeEE--EcccCccEEE
Confidence            6432    1111222222                                       22333333333  5667777777


Q ss_pred             EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc------------
Q 022870          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP------------  244 (291)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~------------  244 (291)
                      ||.+.......+..             ...+.++. ..     |. .|++|+.|..|.+||+++...+            
T Consensus       121 wD~R~~~~~~~~d~-------------~kkVy~~~-v~-----g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt  180 (323)
T KOG1036|consen  121 WDPRNKVVVGTFDQ-------------GKKVYCMD-VS-----GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT  180 (323)
T ss_pred             Eecccccccccccc-------------CceEEEEe-cc-----CC-EEEEeecCceEEEEEcccccchhhhccccceeEE
Confidence            77766444333331             12344333 32     22 6666666667777776653221            


Q ss_pred             -----------------------------------eeecccccc---------ceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          245 -----------------------------------LTAMKVHLE---------PVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       245 -----------------------------------~~~~~~h~~---------~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                                                         -..|+.|..         +|++|+|+|-...||||+.||.|.+||
T Consensus       181 R~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd  260 (323)
T KOG1036|consen  181 RCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD  260 (323)
T ss_pred             EEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence                                               122334432         899999999888899999999999999


Q ss_pred             cCCCceeee
Q 022870          281 LDHSTVSHC  289 (291)
Q Consensus       281 ~~~~~~~~~  289 (291)
                      +...+-+..
T Consensus       261 ~~~rKrl~q  269 (323)
T KOG1036|consen  261 LFNRKRLKQ  269 (323)
T ss_pred             Ccchhhhhh
Confidence            998876654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=1.6e-23  Score=164.75  Aligned_cols=261  Identities=11%  Similarity=0.064  Sum_probs=168.4

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEE-EeCC
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRD   85 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~d   85 (291)
                      .+++..+.+|.. +.+++|+|++..+ ++++.++.|++||..+++....+..+..   +..++|+|  +++.+++ ++.|
T Consensus        21 ~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~--~g~~l~~~~~~~   94 (300)
T TIGR03866        21 LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---PELFALHP--NGKILYIANEDD   94 (300)
T ss_pred             CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC---ccEEEECC--CCCEEEEEcCCC
Confidence            456777776544 6789999999876 5678899999999999888777665432   56789999  8887765 4568


Q ss_pred             CeEEEEECCCCCCCCCCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCc
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPK  162 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  162 (291)
                      +.|++||+++.+...    .+.. .......+++.................++.............+..  ++|+|++..
T Consensus        95 ~~l~~~d~~~~~~~~----~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  170 (300)
T TIGR03866        95 NLVTVIDIETRKVLA----EIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKE  170 (300)
T ss_pred             CeEEEEECCCCeEEe----EeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCE
Confidence            999999998765432    1211 111222333322222111112222334455443332221112222  789999987


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                      +++ ++..++.|++||+++++.+..+.....   ..+.  .......+. |+|+   ++..+++.+.++.|.+||+++ +
T Consensus       171 l~~-~~~~~~~v~i~d~~~~~~~~~~~~~~~---~~~~--~~~~~~~i~-~s~d---g~~~~~~~~~~~~i~v~d~~~-~  239 (300)
T TIGR03866       171 LWV-SSEIGGTVSVIDVATRKVIKKITFEIP---GVHP--EAVQPVGIK-LTKD---GKTAFVALGPANRVAVVDAKT-Y  239 (300)
T ss_pred             EEE-EcCCCCEEEEEEcCcceeeeeeeeccc---cccc--ccCCccceE-ECCC---CCEEEEEcCCCCeEEEEECCC-C
Confidence            655 555689999999999887766542100   0010  111233455 8988   442345555677899999987 6


Q ss_pred             CceeeccccccceeEEEeecCCCeeEEe-cCCCeEEEEEcCCCceeeee
Q 022870          243 IPLTAMKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +.+..+. +...+.+++|+|++.+|+++ +.+|.|++||+++++.+..+
T Consensus       240 ~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       240 EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            6655443 45578999999999999876 46899999999999987664

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.7e-25  Score=167.13  Aligned_cols=209  Identities=18%  Similarity=0.241  Sum_probs=149.9

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +..+++.||..+|..+.||||.++|++++.|..+++||+.+|.+...+... ....+.+++|.|  ||..+++|+.|+++
T Consensus       260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~p--Dg~~~V~Gs~dr~i  336 (519)
T KOG0293|consen  260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWCP--DGFRFVTGSPDRTI  336 (519)
T ss_pred             eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC-cCCCcceeEEcc--CCceeEecCCCCcE
Confidence            457899999999999999999999999999999999999999988877543 224599999999  99999999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEe---------------------------------------ecccCcc-ceecc
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKL---------------------------------------SLVKEPY-ANAKQ  128 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~-~~~~~  128 (291)
                      ..||++......  -.-.........++                                       ++..... .....
T Consensus       337 ~~wdlDgn~~~~--W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  337 IMWDLDGNILGN--WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             EEecCCcchhhc--ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc
Confidence            999987653211  00000000111111                                       1111111 11222


Q ss_pred             CCCCceeeecccCccccccCCCCCC------cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCC
Q 022870          129 ANEPKDCYEREVGETVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK  202 (291)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  202 (291)
                      .......|++. .+.......+|..      -+|-.....+++ +|++|+.|+||+..+++++..+.        ||.  
T Consensus       415 ~~qei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia-SGSED~kvyIWhr~sgkll~~Ls--------GHs--  482 (519)
T KOG0293|consen  415 QDQEIHLWDLE-ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA-SGSEDSKVYIWHRISGKLLAVLS--------GHS--  482 (519)
T ss_pred             ccCeeEEeecc-hhhHHHHhhcccccceEEEeccCCCCcceEE-ecCCCceEEEEEccCCceeEeec--------CCc--
Confidence            33455667777 3344445555544      456555545554 89999999999999999999999        885  


Q ss_pred             cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                        ..+.+++ |+|..+   ..+|+|++||+|+||-...
T Consensus       483 --~~vNcVs-wNP~~p---~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  483 --KTVNCVS-WNPADP---EMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             --ceeeEEe-cCCCCH---HHhhccCCCCeEEEecCCc
Confidence              4677776 999843   2899999999999998764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1e-24  Score=159.91  Aligned_cols=214  Identities=18%  Similarity=0.337  Sum_probs=168.4

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEe------CCCC------------------------------
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD------TVQH------------------------------   50 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd------~~~~------------------------------   50 (291)
                      .++++.++.||.+.|++++|++.+.++++++.|++-.||.      +.+.                              
T Consensus       179 sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~  258 (481)
T KOG0300|consen  179 SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDG  258 (481)
T ss_pred             cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCC
Confidence            4578999999999999999999999999999999999997      2110                              


Q ss_pred             ----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCcccee
Q 022870           51 ----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA  126 (291)
Q Consensus        51 ----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (291)
                          -++..+.+|..  .|.++.|..  .|.++++++.|.+-.+||+++++.+.  .++.+.....-             
T Consensus       259 ~tiRvPl~~ltgH~~--vV~a~dWL~--gg~Q~vTaSWDRTAnlwDVEtge~v~--~LtGHd~ELtH-------------  319 (481)
T KOG0300|consen  259 HTIRVPLMRLTGHRA--VVSACDWLA--GGQQMVTASWDRTANLWDVETGEVVN--ILTGHDSELTH-------------  319 (481)
T ss_pred             ceeeeeeeeeecccc--ceEehhhhc--CcceeeeeeccccceeeeeccCceec--cccCcchhccc-------------
Confidence                02445667774  499999999  89999999999999999999998755  33333222222             


Q ss_pred             ccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCc-ceeeEecccccCCCCCCCCCcce
Q 022870          127 KQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRG  205 (291)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~  205 (291)
                                                 .+-+|..+ + +++.+.|.+.++||.+.. ..+..|+        ||.+    
T Consensus       320 ---------------------------cstHptQr-L-VvTsSrDtTFRLWDFReaI~sV~VFQ--------GHtd----  358 (481)
T KOG0300|consen  320 ---------------------------CSTHPTQR-L-VVTSSRDTTFRLWDFREAIQSVAVFQ--------GHTD----  358 (481)
T ss_pred             ---------------------------cccCCcce-E-EEEeccCceeEeccchhhcceeeeec--------cccc----
Confidence                                       22455543 3 347888999999999843 2345566        7744    


Q ss_pred             eeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      .++++. |..+.     .+++|+.|.+|+|||+++...++.+++. ..+++.++.+..+..++.--++..|++||++..+
T Consensus       359 tVTS~v-F~~dd-----~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R  431 (481)
T KOG0300|consen  359 TVTSVV-FNTDD-----RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR  431 (481)
T ss_pred             ceeEEE-EecCC-----ceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence            566666 88762     6999999999999999998999999986 6789999999988888888888999999999876


Q ss_pred             ee
Q 022870          286 VS  287 (291)
Q Consensus       286 ~~  287 (291)
                      +.
T Consensus       432 la  433 (481)
T KOG0300|consen  432 LA  433 (481)
T ss_pred             cc
Confidence            54

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=4.4e-26  Score=183.01  Aligned_cols=210  Identities=19%  Similarity=0.328  Sum_probs=176.6

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      +.+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+  |.++.|++  +..+|++|+.+|+|++|
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hesp--IeSl~f~~--~E~LlaagsasgtiK~w   97 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESP--IESLTFDT--SERLLAAGSASGTIKVW   97 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCc--ceeeecCc--chhhhcccccCCceeee
Confidence            455678999999998668889999999999999999988888889999855  99999999  87899999999999999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (291)
                      |++..+..+    ++..+......                                      +.|+|.+.+.  ++|+.|
T Consensus        98 DleeAk~vr----tLtgh~~~~~s--------------------------------------v~f~P~~~~~--a~gStd  133 (825)
T KOG0267|consen   98 DLEEAKIVR----TLTGHLLNITS--------------------------------------VDFHPYGEFF--ASGSTD  133 (825)
T ss_pred             ehhhhhhhh----hhhccccCcce--------------------------------------eeeccceEEe--cccccc
Confidence            999887544    22222211111                                      5599998765  389999


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (291)
                      ..+++||++..-+...+.        +|.    ..+-.+. |+|+   |+ +++.|++|..++|||+.. ++.+..|..|
T Consensus       134 td~~iwD~Rk~Gc~~~~~--------s~~----~vv~~l~-lsP~---Gr-~v~~g~ed~tvki~d~~a-gk~~~ef~~~  195 (825)
T KOG0267|consen  134 TDLKIWDIRKKGCSHTYK--------SHT----RVVDVLR-LSPD---GR-WVASGGEDNTVKIWDLTA-GKLSKEFKSH  195 (825)
T ss_pred             ccceehhhhccCceeeec--------CCc----ceeEEEe-ecCC---Cc-eeeccCCcceeeeecccc-cccccccccc
Confidence            999999999888998888        553    3344454 9998   55 999999999999999998 9999999999


Q ss_pred             ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      ++.+..+.|+|..-++++||.|+++++||+++..++
T Consensus       196 e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I  231 (825)
T KOG0267|consen  196 EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVI  231 (825)
T ss_pred             cccccccccCchhhhhccCCCCceeeeeccceeEEe
Confidence            999999999999999999999999999999977665

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=2.6e-24  Score=172.15  Aligned_cols=204  Identities=18%  Similarity=0.338  Sum_probs=158.7

Q ss_pred             CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      ....|+.+|+||+..|.|++...++. +++||.|.++++|..  +++...+++|...  |++++..|  + +.++|||.|
T Consensus        89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~as--VWAv~~l~--e-~~~vTgsaD  160 (745)
T KOG0301|consen   89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTAS--VWAVASLP--E-NTYVTGSAD  160 (745)
T ss_pred             CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchh--eeeeeecC--C-CcEEeccCc
Confidence            45678999999999999999888886 999999999999985  5667778999855  99999999  6 599999999


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                      .+|++|.-.+  ..+    ++..+......                                      +++-+++ .++ 
T Consensus       161 KtIklWk~~~--~l~----tf~gHtD~VRg--------------------------------------L~vl~~~-~fl-  194 (745)
T KOG0301|consen  161 KTIKLWKGGT--LLK----TFSGHTDCVRG--------------------------------------LAVLDDS-HFL-  194 (745)
T ss_pred             ceeeeccCCc--hhh----hhccchhheee--------------------------------------eEEecCC-CeE-
Confidence            9999999743  222    22222111110                                      3344554 344 


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                       +++.||.|++|++ +++++..+.        +|    +..++++. ..++   +. .++++++|++++||+..   .+.
T Consensus       195 -ScsNDg~Ir~w~~-~ge~l~~~~--------gh----tn~vYsis-~~~~---~~-~Ivs~gEDrtlriW~~~---e~~  252 (745)
T KOG0301|consen  195 -SCSNDGSIRLWDL-DGEVLLEMH--------GH----TNFVYSIS-MALS---DG-LIVSTGEDRTLRIWKKD---ECV  252 (745)
T ss_pred             -eecCCceEEEEec-cCceeeeee--------cc----ceEEEEEE-ecCC---CC-eEEEecCCceEEEeecC---ceE
Confidence             6777999999999 678888887        77    56788877 5554   22 89999999999999976   566


Q ss_pred             eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      +.+.-....|+++.+-++|. +++|++||.||||..+..+.
T Consensus       253 q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~  292 (745)
T KOG0301|consen  253 QVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK  292 (745)
T ss_pred             EEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence            77765566899999988887 78888999999999875543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=3.2e-24  Score=169.13  Aligned_cols=252  Identities=18%  Similarity=0.229  Sum_probs=172.5

Q ss_pred             CCCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870            4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus         4 ~~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      +|.|..+...++||++.|+|+...|.|.+|++|+.||+|+||.+.++.|++++...   +.|.|++|+|..+ ..+++++
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~-~~vLAvA  461 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSD-LCVLAVA  461 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCC-ceeEEEE
Confidence            57888889999999999999999999999999999999999999999999998765   3499999999433 2333444


Q ss_pred             CCCeEEEEECCCCCCCC-----CCcccc---cc---------------ceEEEEEe----------ecccCc--cceecc
Q 022870           84 RDGTVKCWDIENGGLSS-----NPSLTI---KT---------------NSYHFCKL----------SLVKEP--YANAKQ  128 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~-----~~~~~~---~~---------------~~~~~~~~----------~~~~~~--~~~~~~  128 (291)
                      ....+.+-+..-+..+.     ++....   ..               .....+..          ......  ...+..
T Consensus       462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~  541 (733)
T KOG0650|consen  462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP  541 (733)
T ss_pred             ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence            44446666654331111     000000   00               00000000          011111  111111


Q ss_pred             CCC--CceeeecccCccccccC---CCCCC-cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCC
Q 022870          129 ANE--PKDCYEREVGETVDTDS---LCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK  202 (291)
Q Consensus       129 ~~~--~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  202 (291)
                      .++  .+.+..+...... ..+   .++.. +.|+|...++++++   ...|++||+..++.+.++..            
T Consensus       542 ~~~~~~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~kqelvKkL~t------------  605 (733)
T KOG0650|consen  542 DSGNKSVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVAT---QRSVRIYDLSKQELVKKLLT------------  605 (733)
T ss_pred             CCCcceEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEEe---ccceEEEehhHHHHHHHHhc------------
Confidence            111  1122222222211 122   12222 88999999988754   36899999999887777763            


Q ss_pred             cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      ....+..++ .+|.   |. .|+.|+.|+.+..+|+.-..++.+.++.|...|++++|++.-.++++|+.||++.|+.
T Consensus       606 g~kwiS~ms-ihp~---GD-nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  606 GSKWISSMS-IHPN---GD-NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             CCeeeeeee-ecCC---CC-eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            133566666 8887   44 7999999999999999876789999999999999999999999999999999999985

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=1e-23  Score=168.72  Aligned_cols=244  Identities=17%  Similarity=0.282  Sum_probs=183.8

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEE--EEeeecCCcceEE-EEEeecCCCCeEEEEeCC
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS--SSWVHSAAHGIVS-VATGPSIGLNKVISQGRD   85 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~d   85 (291)
                      +.-+.+.||...|..+++.+.. .+++++.||++++|+-...+.+.  .+..|.+-  |.. ++|.+ .++.++++|+.|
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~--i~~~i~y~e-~~~~~l~~g~~D   80 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGF--IANSICYAE-SDKGRLVVGGMD   80 (745)
T ss_pred             eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcce--eeccceecc-ccCcceEeeccc
Confidence            5678899999999999987655 89999999999999965554433  35555533  555 77776 266789999999


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCC
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP  161 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  161 (291)
                      .++.+|...+.    .|...++.+....|..+...........-.....+|   ........+.+|+.    ++.-|++ 
T Consensus        81 ~~i~v~~~~~~----~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW---~~~~l~~~l~gH~asVWAv~~l~e~-  152 (745)
T KOG0301|consen   81 TTIIVFKLSQA----EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVW---RIGELVYSLQGHTASVWAVASLPEN-  152 (745)
T ss_pred             ceEEEEecCCC----CchhhhhccccceeeeecCCcCceEecccccceEEe---cchhhhcccCCcchheeeeeecCCC-
Confidence            99999999887    456688888888887776655442222222333333   33334444788877    5556666 


Q ss_pred             cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                      .++  +|+.|.+|++|.-  ++.+++|.        +|.+    .+..++ +-|+.     .+++++.||.|++|++.  
T Consensus       153 ~~v--TgsaDKtIklWk~--~~~l~tf~--------gHtD----~VRgL~-vl~~~-----~flScsNDg~Ir~w~~~--  208 (745)
T KOG0301|consen  153 TYV--TGSADKTIKLWKG--GTLLKTFS--------GHTD----CVRGLA-VLDDS-----HFLSCSNDGSIRLWDLD--  208 (745)
T ss_pred             cEE--eccCcceeeeccC--Cchhhhhc--------cchh----heeeeE-EecCC-----CeEeecCCceEEEEecc--
Confidence            333  8899999999986  66788888        8855    444554 76652     59999999999999995  


Q ss_pred             CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +..+.++.+|..-|.++....++..++|+++|++++||+..  .+.++|
T Consensus       209 ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I  255 (745)
T KOG0301|consen  209 GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI  255 (745)
T ss_pred             CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE
Confidence            88999999999999999987777789999999999999987  454443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.5e-24  Score=161.20  Aligned_cols=245  Identities=16%  Similarity=0.238  Sum_probs=184.9

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .+..++++|.+.|+.|++..  ..+++++.|.+|+.|-++- ..++++.+.   ..++.+.-+.  .++.++|+|+  .|
T Consensus       100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~---s~~~gIdh~~--~~~~FaTcGe--~i  169 (433)
T KOG0268|consen  100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK---SVYLGIDHHR--KNSVFATCGE--QI  169 (433)
T ss_pred             hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc---cccccccccc--ccccccccCc--ee
Confidence            56789999999999999987  5789999999999999764 466666544   3377777776  6688999887  49


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAV  166 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  166 (291)
                      .|||......+.  .++........+.+.+................+++++...........-..  ++|+|.+- .+ +
T Consensus       170 ~IWD~~R~~Pv~--smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeaf-nF-~  245 (433)
T KOG0268|consen  170 DIWDEQRDNPVS--SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAF-NF-V  245 (433)
T ss_pred             eecccccCCccc--eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCcccc-ce-e
Confidence            999998765544  345555666777777777666666667778888888877765554433322  99999543 33 3


Q ss_pred             ecCCcCeEEEEeCCCcce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          167 AGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                      +|++|..++.||++..+. +....        +|    ...++++. |+|.   |+ .+++|+.|.+|+||..+. +..-
T Consensus       246 ~a~ED~nlY~~DmR~l~~p~~v~~--------dh----vsAV~dVd-fspt---G~-EfvsgsyDksIRIf~~~~-~~SR  307 (433)
T KOG0268|consen  246 AANEDHNLYTYDMRNLSRPLNVHK--------DH----VSAVMDVD-FSPT---GQ-EFVSGSYDKSIRIFPVNH-GHSR  307 (433)
T ss_pred             eccccccceehhhhhhcccchhhc--------cc----ceeEEEec-cCCC---cc-hhccccccceEEEeecCC-Ccch
Confidence            788899999999997654 33333        44    55788898 9999   55 899999999999999986 3322


Q ss_pred             eecc-ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          246 TAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       246 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      ..+. .-...|.++.|+-|.++++|||+|+.|++|.....+
T Consensus       308 diYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  308 DIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             hhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            2211 123579999999999999999999999999876544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=1.3e-24  Score=159.93  Aligned_cols=244  Identities=14%  Similarity=0.185  Sum_probs=189.3

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe-eecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      .|--|.++|.|++|+.|...||+|+.||.|++|.+++|.|++.+. .|.  ..|+|+.|+.  |+..+++++.|.++++.
T Consensus       258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt--kGvt~l~FSr--D~SqiLS~sfD~tvRiH  333 (508)
T KOG0275|consen  258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHT--KGVTCLSFSR--DNSQILSASFDQTVRIH  333 (508)
T ss_pred             ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhc--cCeeEEEEcc--CcchhhcccccceEEEe
Confidence            455688999999999999999999999999999999999999987 676  5599999999  99999999999999999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-----cccCCCCCcEEEE
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAV  166 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  166 (291)
                      -+..+++..  .+..+........+...+..... ....+...+|+...........+...+     +-.-|.++.-+++
T Consensus       334 GlKSGK~LK--EfrGHsSyvn~a~ft~dG~~iis-aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV  410 (508)
T KOG0275|consen  334 GLKSGKCLK--EFRGHSSYVNEATFTDDGHHIIS-ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV  410 (508)
T ss_pred             ccccchhHH--HhcCccccccceEEcCCCCeEEE-ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE
Confidence            999998865  33444444444555555444333 344566778887777665554443333     3344555555554


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +. ..+++.+-++. ++.++.+..       |... ....+ +.. .+|.   |+ ++.+.++|+.++-|...+ +....
T Consensus       411 CN-rsntv~imn~q-GQvVrsfsS-------GkRE-gGdFi-~~~-lSpk---Ge-wiYcigED~vlYCF~~~s-G~LE~  473 (508)
T KOG0275|consen  411 CN-RSNTVYIMNMQ-GQVVRSFSS-------GKRE-GGDFI-NAI-LSPK---GE-WIYCIGEDGVLYCFSVLS-GKLER  473 (508)
T ss_pred             Ec-CCCeEEEEecc-ceEEeeecc-------CCcc-CCceE-EEE-ecCC---Cc-EEEEEccCcEEEEEEeec-Cceee
Confidence            44 46889999885 677888874       3222 22333 333 8887   55 999999999999999998 89999


Q ss_pred             eccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      .+..|+..|.+++.+|..+.||+-+.||.+++|.
T Consensus       474 tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  474 TLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eeecccccccccccCcccchhhhhcccchhhhcC
Confidence            9999999999999999999999999999999995

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.1e-25  Score=180.67  Aligned_cols=200  Identities=22%  Similarity=0.369  Sum_probs=166.0

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .++..|.+|+.+|.++.|+++..+|++|+.+|+|++||++.++.++++.+|...  +.++.|+|  -+.++++|+.|+.+
T Consensus        61 ~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--~~sv~f~P--~~~~~a~gStdtd~  136 (825)
T KOG0267|consen   61 NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--ITSVDFHP--YGEFFASGSTDTDL  136 (825)
T ss_pred             chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC--cceeeecc--ceEEeccccccccc
Confidence            446679999999999999999999999999999999999999999999999955  99999999  78899999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      ++||++...+..    ....+......                                      ++|+|+|+...  .|
T Consensus       137 ~iwD~Rk~Gc~~----~~~s~~~vv~~--------------------------------------l~lsP~Gr~v~--~g  172 (825)
T KOG0267|consen  137 KIWDIRKKGCSH----TYKSHTRVVDV--------------------------------------LRLSPDGRWVA--SG  172 (825)
T ss_pred             eehhhhccCcee----eecCCcceeEE--------------------------------------EeecCCCceee--cc
Confidence            999999765533    22222211111                                      56999997544  67


Q ss_pred             CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      ..|..+++||...++....|+        +|    .+.+.++. |+|..-    .+++|+.|+.|++||+++ ...+...
T Consensus       173 ~ed~tvki~d~~agk~~~ef~--------~~----e~~v~sle-~hp~e~----Lla~Gs~d~tv~f~dlet-fe~I~s~  234 (825)
T KOG0267|consen  173 GEDNTVKIWDLTAGKLSKEFK--------SH----EGKVQSLE-FHPLEV----LLAPGSSDRTVRFWDLET-FEVISSG  234 (825)
T ss_pred             CCcceeeeecccccccccccc--------cc----cccccccc-cCchhh----hhccCCCCceeeeeccce-eEEeecc
Confidence            779999999999999999988        56    44566666 998733    889999999999999998 7777777


Q ss_pred             cccccceeEEEeecCCCeeEEecCCC
Q 022870          249 KVHLEPVLCLSIDESCNGGISGGADQ  274 (291)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg  274 (291)
                      +.....|.+.+|++++..+.+|..+.
T Consensus       235 ~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  235 KPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CCccCCceeeeecCCceeeecCchhh
Confidence            77788999999999999888886553

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=2.4e-23  Score=159.20  Aligned_cols=258  Identities=18%  Similarity=0.246  Sum_probs=180.8

Q ss_pred             eEEecCCccceeEEEEcCCC--CEEEEecCCCeEEEEeCCCC----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870           11 VAVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~--~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      ...++-|.++|++++|+|..  +++|+|..-|+|-+||+.+.    .-+..+..|.  .+|.++.|+|. +...+++.|.
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs--~~Vs~l~F~P~-n~s~i~ssSy  255 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS--GPVSGLKFSPA-NTSQIYSSSY  255 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC--ccccceEecCC-Chhheeeecc
Confidence            34566789999999999943  58899999999999999522    2344556666  55999999996 4479999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCc-cceeccCCCCceeeecccCccccccCCCCCC----cccCCC
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  159 (291)
                      ||+|++-|+++.....  ++.........+.+.+.... .......-+...+++.+........+.-|..    ++++|.
T Consensus       256 DGtiR~~D~~~~i~e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  256 DGTIRLQDFEGNISEE--VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             CceeeeeeecchhhHH--HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence            9999999999875432  44444333333333332222 2222233335677777776655555554544    999999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCcceeeE-ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (291)
                      .+++++ +++.|++.+|||+|....... +         -+..+++..+.+.. |+|++  |  .|++.+.|..|+|||.
T Consensus       334 ~p~~la-T~s~D~T~kIWD~R~l~~K~sp~---------lst~~HrrsV~sAy-FSPs~--g--tl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  334 CPWFLA-TASLDQTAKIWDLRQLRGKASPF---------LSTLPHRRSVNSAY-FSPSG--G--TLLTTCQDNEIRVFDS  398 (498)
T ss_pred             Cchhee-ecccCcceeeeehhhhcCCCCcc---------eecccccceeeeeE-EcCCC--C--ceEeeccCCceEEeec
Confidence            999888 567799999999997543332 1         11222355666665 99994  3  5999999999999998


Q ss_pred             c---CCCCceeecccccc------ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          239 R---NPGIPLTAMKVHLE------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       239 ~---~~~~~~~~~~~h~~------~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .   ....+...+. |..      ......|+|+..++++|-.-..|-|+|-+.++.+..
T Consensus       399 s~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e  457 (498)
T KOG4328|consen  399 SCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE  457 (498)
T ss_pred             ccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence            4   2134444443 322      234568999999999999999999999999986654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=3.8e-24  Score=151.76  Aligned_cols=245  Identities=15%  Similarity=0.146  Sum_probs=192.2

Q ss_pred             EEecCCccceeEEEEcC---CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           12 AVLRGHRASVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .+..||+.+|-.++|+|   +|-+|++++.||.-.+-+=++|.-+.++.+|++.  |++...+.  +..+.++++.|=+-
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkga--vw~~~l~~--na~~aasaaadfta   83 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGA--VWSATLNK--NATRAASAAADFTA   83 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcc--eeeeecCc--hhhhhhhhcccchh
Confidence            35689999999999997   8888999999999999998999999999999977  99999988  76788899999999


Q ss_pred             EEEECCCCCCCCCCcccc-ccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcE
Q 022870           89 KCWDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (291)
                      ++||.-++..+.    .+ +.+-...+.|+-..... .........++++++........+.+|..    +.|......+
T Consensus        84 kvw~a~tgdelh----sf~hkhivk~~af~~ds~~l-ltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~i  158 (334)
T KOG0278|consen   84 KVWDAVTGDELH----SFEHKHIVKAVAFSQDSNYL-LTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCI  158 (334)
T ss_pred             hhhhhhhhhhhh----hhhhhheeeeEEecccchhh-hccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceE
Confidence            999998886543    22 22333444444332221 11222234566777877777888888877    6777776665


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      +  ++..|++||+||.+++..++++..             +..+.++. ++++   |+  +++-...+.|.+||..+ ..
T Consensus       159 L--SSadd~tVRLWD~rTgt~v~sL~~-------------~s~VtSlE-vs~d---G~--ilTia~gssV~Fwdaks-f~  216 (334)
T KOG0278|consen  159 L--SSADDKTVRLWDHRTGTEVQSLEF-------------NSPVTSLE-VSQD---GR--ILTIAYGSSVKFWDAKS-FG  216 (334)
T ss_pred             E--eeccCCceEEEEeccCcEEEEEec-------------CCCCccee-eccC---CC--EEEEecCceeEEecccc-cc
Confidence            5  446799999999999999999883             44567776 8887   53  56666678899999998 77


Q ss_pred             ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      +++.++. ...|.+...+|+...+++|+.|..++.||+.++.-+-
T Consensus       217 ~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~  260 (334)
T KOG0278|consen  217 LLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG  260 (334)
T ss_pred             ceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceee
Confidence            7777775 5678999999999999999999999999999987653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5.4e-22  Score=139.12  Aligned_cols=219  Identities=19%  Similarity=0.266  Sum_probs=159.1

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC------C--------eE-EEEEeeecCCcceEEEEEeecCC
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------H--------RT-VSSSWVHSAAHGIVSVATGPSIG   75 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~------~--------~~-~~~~~~~~~~~~v~~~~~~~~~~   75 (291)
                      +.+|+ .+..|++++|+|.|.+.+.|+...+++|-....      +        .. .+.-+.|.  ..|+|.+|+|  +
T Consensus        26 i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk--gsiyc~~ws~--~  100 (350)
T KOG0641|consen   26 INILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK--GSIYCTAWSP--C  100 (350)
T ss_pred             EEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC--ccEEEEEecC--c
Confidence            44444 567899999999999999999999999875432      1        01 11123345  4599999999  9


Q ss_pred             CCeEEEEeCCCeEEEEECCCCCCCC---CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC
Q 022870           76 LNKVISQGRDGTVKCWDIENGGLSS---NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS  152 (291)
Q Consensus        76 ~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (291)
                      |.++++|+.|++|++.-++...+..   ...+.++........|                                    
T Consensus       101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~f------------------------------------  144 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAF------------------------------------  144 (350)
T ss_pred             cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEE------------------------------------
Confidence            9999999999999998776554321   0111111111111111                                    


Q ss_pred             CcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870          153 KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (291)
Q Consensus       153 ~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (291)
                       +.=...+..++++.|..|..|++-|...++..+.+.        +|    .+-+.++-.|+..      .+++|++|.+
T Consensus       145 -ld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s--------gh----tghilalyswn~~------m~~sgsqdkt  205 (350)
T KOG0641|consen  145 -LDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS--------GH----TGHILALYSWNGA------MFASGSQDKT  205 (350)
T ss_pred             -ecCCCcCceEEEecCCCcceEEEeecCCCCcceeec--------CC----cccEEEEEEecCc------EEEccCCCce
Confidence             001234557888888888899999999999998888        77    4456665456643      9999999999


Q ss_pred             EEEEEccCCCCceeeccc--c-----ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          233 ILVWDIRNPGIPLTAMKV--H-----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       233 i~vwd~~~~~~~~~~~~~--h-----~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      |++||++- ..++..+..  |     +..|.+++.+|.|++|++|-.|....+||++.++.++.+
T Consensus       206 irfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f  269 (350)
T KOG0641|consen  206 IRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF  269 (350)
T ss_pred             EEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee
Confidence            99999997 666666542  2     357999999999999999999999999999999988754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1e-23  Score=160.59  Aligned_cols=209  Identities=16%  Similarity=0.232  Sum_probs=155.0

Q ss_pred             ecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        14 l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      -.+|++.|..|+|+. ..+.||+||.|.+|++||+.++++..++..|..+  |.++.|+|. ....|++|+.|++|.+.|
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~--Vq~l~wh~~-~p~~LLsGs~D~~V~l~D  315 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKK--VQTLEWHPY-EPSVLLSGSYDGTVALKD  315 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCc--eeEEEecCC-CceEEEeccccceEEeee
Confidence            347999999999998 4568999999999999999999999999988755  999999996 558999999999999999


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (291)
                      .+......   ...+.......                                       ++|.|.....++ ++..||
T Consensus       316 ~R~~~~s~---~~wk~~g~VEk---------------------------------------v~w~~~se~~f~-~~tddG  352 (463)
T KOG0270|consen  316 CRDPSNSG---KEWKFDGEVEK---------------------------------------VAWDPHSENSFF-VSTDDG  352 (463)
T ss_pred             ccCccccC---ceEEeccceEE---------------------------------------EEecCCCceeEE-EecCCc
Confidence            99632211   11111110000                                       558888777666 567799


Q ss_pred             eEEEEeCCCc-ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc
Q 022870          173 EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (291)
Q Consensus       173 ~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (291)
                      +|+-+|+|+. +++.+++        +|..++.+.    . +++..+ +  ++++++.|+.|++|++.. ..+- ....|
T Consensus       353 ~v~~~D~R~~~~~vwt~~--------AHd~~ISgl----~-~n~~~p-~--~l~t~s~d~~Vklw~~~~-~~~~-~v~~~  414 (463)
T KOG0270|consen  353 TVYYFDIRNPGKPVWTLK--------AHDDEISGL----S-VNIQTP-G--LLSTASTDKVVKLWKFDV-DSPK-SVKEH  414 (463)
T ss_pred             eEEeeecCCCCCceeEEE--------eccCCcceE----E-ecCCCC-c--ceeeccccceEEEEeecC-CCCc-ccccc
Confidence            9999999986 7888888        786655444    3 555432 2  899999999999999975 3321 11222


Q ss_pred             ---ccceeEEEeecCCC-eeEEecCCCeEEEEEcCCCce
Q 022870          252 ---LEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       252 ---~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~~~  286 (291)
                         -+...|.++.|+-. .++.|+..+.++|||+-+..-
T Consensus       415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             cccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence               23466667777644 467888888999999977643

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.8e-23  Score=153.22  Aligned_cols=220  Identities=19%  Similarity=0.248  Sum_probs=144.3

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE--EEEEeeecCCcceEEEEEeecCCCCe-EEEEeCCCe
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNK-VISQGRDGT   87 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~dg~   87 (291)
                      +.+|+||.+.|++++|+.||++|+|++.|++|++|++.+...  .+.++..-..+.-+.+.|.|  |-.- +++.-...+
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap--Dc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP--DCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC--CcceEEEEEccCCE
Confidence            457899999999999999999999999999999999876321  11111111112368999999  6554 445555668


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (291)
                      +++|.+...+--.   .+.+...  .....+......         .+++                +... ++..+++ +
T Consensus       157 l~vyk~~K~~dG~---~~~~~v~--~D~~~f~~kh~v---------~~i~----------------iGiA-~~~k~im-s  204 (420)
T KOG2096|consen  157 LCVYKLVKKTDGS---GSHHFVH--IDNLEFERKHQV---------DIIN----------------IGIA-GNAKYIM-S  204 (420)
T ss_pred             EEEEEeeecccCC---CCccccc--ccccccchhccc---------ceEE----------------Eeec-CCceEEE-E
Confidence            9999876443211   0111000  000000000000         0000                1112 2233344 6


Q ss_pred             cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc---CC---
Q 022870          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR---NP---  241 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~---~~---  241 (291)
                      ++.|..|.+||++ ++.+..+..        ...     -...++.+|+   |+ ++++++-.-.|+||..-   .+   
T Consensus       205 as~dt~i~lw~lk-Gq~L~~idt--------nq~-----~n~~aavSP~---GR-Fia~~gFTpDVkVwE~~f~kdG~fq  266 (420)
T KOG2096|consen  205 ASLDTKICLWDLK-GQLLQSIDT--------NQS-----SNYDAAVSPD---GR-FIAVSGFTPDVKVWEPIFTKDGTFQ  266 (420)
T ss_pred             ecCCCcEEEEecC-Cceeeeecc--------ccc-----cccceeeCCC---Cc-EEEEecCCCCceEEEEEeccCcchh
Confidence            7779999999999 788777763        111     1112258998   66 99999999999999863   10   


Q ss_pred             -CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          242 -GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       242 -~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                       -..+.++++|...|..++|+++...+++.|.||++++||++
T Consensus       267 ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  267 EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence             13467789999999999999999999999999999999986

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.3e-22  Score=160.66  Aligned_cols=247  Identities=18%  Similarity=0.276  Sum_probs=177.4

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      ..+|.+|||+.+.+.||.+-.||.|.+|++..+ -+...+.++.. ..|.+++|++   +.+|++.+.+|.|.-||+.+.
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~d-rsIE~L~W~e---~~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPED-RSIESLAWAE---GGRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCC-CceeeEEEcc---CCeEEeecCCceEEEEecccC
Confidence            578999999998889999999999999999865 33445555544 6799999997   488999999999999999988


Q ss_pred             CCCCCCccccccceEEEEEeecccCccceecc-CCCCceeeecccCccccccCCCCC-C----cccCCCCCcEEEEecCC
Q 022870           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDS-K----DDVPAEGPKYMAVAGEQ  170 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~g~~  170 (291)
                      +...    ............+........+.. ..+....+...+...........+ .    ++|+|++..++  +|+.
T Consensus       101 k~~~----~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~--~Gs~  174 (691)
T KOG2048|consen  101 KQKY----NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA--GGSI  174 (691)
T ss_pred             ceeE----EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE--eccc
Confidence            6533    333332222222222222211111 223333334444443322222222 2    88999997666  7999


Q ss_pred             cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc
Q 022870          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (291)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (291)
                      ||.|++||..+++.+......-    .+-.......++++. |-.+   +  .|++|...|.|.+||... +..++.+..
T Consensus       175 Dg~Iriwd~~~~~t~~~~~~~~----d~l~k~~~~iVWSv~-~Lrd---~--tI~sgDS~G~V~FWd~~~-gTLiqS~~~  243 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHIITMQL----DRLSKREPTIVWSVL-FLRD---S--TIASGDSAGTVTFWDSIF-GTLIQSHSC  243 (691)
T ss_pred             CceEEEEEcCCCceEEEeeecc----cccccCCceEEEEEE-Eeec---C--cEEEecCCceEEEEcccC-cchhhhhhh
Confidence            9999999999988766322100    022222466788888 6544   2  799999999999999998 999999999


Q ss_pred             cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       251 h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      |.+.|.+++.++++.++++++.|+.|..+...+++
T Consensus       244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~  278 (691)
T KOG2048|consen  244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK  278 (691)
T ss_pred             hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence            99999999999999999999999999999887663

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=6.4e-23  Score=162.87  Aligned_cols=253  Identities=16%  Similarity=0.256  Sum_probs=177.1

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEE--EeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ++....|...|..+.|-|-...|++++.|.++++||+++++++..  +.+|...  |.+++|.|. +...|++|+.||.|
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~S--vkS~cf~~~-n~~vF~tGgRDg~i  169 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGS--VKSECFMPT-NPAVFCTGGRDGEI  169 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccc--cchhhhccC-CCcceeeccCCCcE
Confidence            345567999999999999667899999999999999999888776  7788866  999999995 45789999999999


Q ss_pred             EEEECCCCCCCC----------------CCccc---------cccceEEE---EEeecccCccceeccCCCCceeeeccc
Q 022870           89 KCWDIENGGLSS----------------NPSLT---------IKTNSYHF---CKLSLVKEPYANAKQANEPKDCYEREV  140 (291)
Q Consensus        89 ~iwd~~~~~~~~----------------~~~~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (291)
                      .|||++......                .+...         ........   ..+..+......+....+...+||++.
T Consensus       170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk  249 (720)
T KOG0321|consen  170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK  249 (720)
T ss_pred             EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence            999987544111                00000         00111111   111222223333444566788899876


Q ss_pred             Cccccc-------cCCCCCC-------cccCCCCCcEEEEecCCcCeEEEEeCCCcc--eeeEecccccCCCCCCCCCcc
Q 022870          141 GETVDT-------DSLCDSK-------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGR  204 (291)
Q Consensus       141 ~~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~  204 (291)
                      ......       .+..+..       +.....|.+++|. + .|+.|++|++.+..  ++..+.        ++.. ..
T Consensus       250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As-C-tD~sIy~ynm~s~s~sP~~~~s--------g~~~-~s  318 (720)
T KOG0321|consen  250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS-C-TDNSIYFYNMRSLSISPVAEFS--------GKLN-SS  318 (720)
T ss_pred             cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE-e-cCCcEEEEeccccCcCchhhcc--------Cccc-ce
Confidence            543322       1222211       5666778888864 3 38999999998754  233333        2211 11


Q ss_pred             eeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEe--ecCCCeeEEecCCCeEEEEEcC
Q 022870          205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      -.+ .- ..+|+   +. ++++|+.|...++|.+.+...+...+.+|.-.|++++|  ++.+. ++++++|..+++|++.
T Consensus       319 f~v-ks-~lSpd---~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  319 FYV-KS-ELSPD---DC-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP-VATCSDDFRVKIWRLS  391 (720)
T ss_pred             eee-ee-ecCCC---Cc-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC-ceeeccCcceEEEecc
Confidence            112 12 36777   44 99999999999999999988899999999999999999  44555 6777999999999996


Q ss_pred             CC
Q 022870          283 HS  284 (291)
Q Consensus       283 ~~  284 (291)
                      .+
T Consensus       392 ~~  393 (720)
T KOG0321|consen  392 NG  393 (720)
T ss_pred             Cc
Confidence            54

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.1e-22  Score=146.83  Aligned_cols=233  Identities=16%  Similarity=0.155  Sum_probs=165.9

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~   95 (291)
                      -|..++.+++|.++ ..+++|+.||.|+.+|+++++... +..|.  .+|.|+.+++  ..+.+++||.|++|++||.+.
T Consensus        52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~-igth~--~~i~ci~~~~--~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ-IGTHD--EGIRCIEYSY--EVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCccee-eccCC--CceEEEEeec--cCCeEEEcccCccEEEEeccc
Confidence            38999999999885 479999999999999999876554 44566  5599999998  778999999999999999997


Q ss_pred             CCCCCCCccccccceEEEEEeeccc-CccceeccCCCCceeeecccCccccccCCCCCC-----cccCCCCCcEEEEecC
Q 022870           96 GGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAVAGE  169 (291)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~  169 (291)
                      .....    ......   ..++... .....+........+|+++........-...-.     +++-|.+.-++  +++
T Consensus       126 ~~~~~----~~d~~k---kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~--~sS  196 (323)
T KOG1036|consen  126 KVVVG----TFDQGK---KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYV--VSS  196 (323)
T ss_pred             ccccc----ccccCc---eEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceE--EEe
Confidence            43322    222222   1222222 223334466677888888877655432222222     78888776666  567


Q ss_pred             CcCeEEEEeCCCc----ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          170 QLSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       170 ~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                      -||.|.+=.+...    +....|+  |..... .....--++.+++ |+|-..    .|+||+.||.|.+||+.+ .+.+
T Consensus       197 ieGRVavE~~d~s~~~~skkyaFk--CHr~~~-~~~~~~yPVNai~-Fhp~~~----tfaTgGsDG~V~~Wd~~~-rKrl  267 (323)
T KOG1036|consen  197 IEGRVAVEYFDDSEEAQSKKYAFK--CHRLSE-KDTEIIYPVNAIA-FHPIHG----TFATGGSDGIVNIWDLFN-RKRL  267 (323)
T ss_pred             ecceEEEEccCCchHHhhhceeEE--eeeccc-CCceEEEEeceeE-eccccc----eEEecCCCceEEEccCcc-hhhh
Confidence            7899988777655    2233343  111111 1112334677787 999732    799999999999999998 8888


Q ss_pred             eeccccccceeEEEeecCCCeeEEecC
Q 022870          246 TAMKVHLEPVLCLSIDESCNGGISGGA  272 (291)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~  272 (291)
                      ..+......|.+++|+.+|..||.++.
T Consensus       268 ~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  268 KQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             hhccCCCCceEEEEeccCCCeEEEEec
Confidence            888887888999999999999998875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.2e-23  Score=170.41  Aligned_cols=209  Identities=17%  Similarity=0.293  Sum_probs=154.1

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCCC----eEEEEEeeecC-CcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~   93 (291)
                      ....++..+++-..++.++. ..++|+.++..    ++...+..... ...+..+.|.. .+.++|++++..|.|.+||+
T Consensus        40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~-~~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ-LYSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhccccc-chhhhheeecCCCcEEEEec
Confidence            44567777788878887776 46888877643    22222221110 02256677874 36689999999999999999


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCe
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  173 (291)
                      ...... ..+..+..+......                                      +.|++..+++++ +|+.||.
T Consensus       118 nk~~rn-k~l~~f~EH~Rs~~~--------------------------------------ldfh~tep~ili-SGSQDg~  157 (839)
T KOG0269|consen  118 NKSIRN-KLLTVFNEHERSANK--------------------------------------LDFHSTEPNILI-SGSQDGT  157 (839)
T ss_pred             Cccccc-hhhhHhhhhccceee--------------------------------------eeeccCCccEEE-ecCCCce
Confidence            873110 111122222222111                                      558888888777 7999999


Q ss_pred             EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc
Q 022870          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE  253 (291)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~  253 (291)
                      |++||++..+...++.        +.    ...+..++ |+|..  +. +++++.+.|.+++||+|.+.++...+.+|.+
T Consensus       158 vK~~DlR~~~S~~t~~--------~n----SESiRDV~-fsp~~--~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G  221 (839)
T KOG0269|consen  158 VKCWDLRSKKSKSTFR--------SN----SESIRDVK-FSPGY--GN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNG  221 (839)
T ss_pred             EEEEeeeccccccccc--------cc----chhhhcee-eccCC--Cc-eEEEecCCceEEEeeccCchhHHHHhhcccC
Confidence            9999999988887777        33    23455666 99973  33 8999999999999999998999999999999


Q ss_pred             ceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      +|.++.|+|++.+|||||.|+.|+|||+.+++
T Consensus       222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~  253 (839)
T KOG0269|consen  222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSR  253 (839)
T ss_pred             ceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence            99999999999999999999999999998654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.4e-22  Score=148.21  Aligned_cols=226  Identities=16%  Similarity=0.233  Sum_probs=153.9

Q ss_pred             CceEEecCCccceeEEEEcCCCC--EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      ..+..+-.|.+.|+++.|.+...  .|++|+.||.|.+|+.....++.+++.|.+.  |+.++.+|  .+.+.++.+.|+
T Consensus        74 ~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHP--S~KLALsVg~D~  149 (362)
T KOG0294|consen   74 KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHP--SGKLALSVGGDQ  149 (362)
T ss_pred             hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--cceeEecC--CCceEEEEcCCc
Confidence            34566778999999999999665  8999999999999999999999999999976  99999999  888888999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (291)
                      .+++||+-.++.-.  +..+...... ..+.  .....++......+.+|.++.-............++..+.....++ 
T Consensus       150 ~lr~WNLV~Gr~a~--v~~L~~~at~-v~w~--~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~-  223 (362)
T KOG0294|consen  150 VLRTWNLVRGRVAF--VLNLKNKATL-VSWS--PQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELL-  223 (362)
T ss_pred             eeeeehhhcCccce--eeccCCccee-eEEc--CCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEE-
Confidence            99999998887533  3333332222 2222  2333333444444555555444332221111111333333333344 


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC----
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG----  242 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~----  242 (291)
                      +|..|+.|++||..+..+...+.        +|..+..+...   .-+|+   +. +|++++.||.|+|||++...    
T Consensus       224 vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~~---~~~~~---~~-~lvTaSSDG~I~vWd~~~~~k~~~  288 (362)
T KOG0294|consen  224 VGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIAS---YTNPE---HE-YLVTASSDGFIKVWDIDMETKKRP  288 (362)
T ss_pred             EecCCceEEEeccCCCccceeee--------cchhheeeeEE---EecCC---ce-EEEEeccCceEEEEEccccccCCc
Confidence            46668999999999988888888        88776665532   12333   44 99999999999999998621    


Q ss_pred             CceeeccccccceeEEEe
Q 022870          243 IPLTAMKVHLEPVLCLSI  260 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~  260 (291)
                      .++..+.- ...++|+..
T Consensus       289 ~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  289 TLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             ceeEEeec-CCccceeee
Confidence            23333332 455666654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=1.7e-22  Score=169.30  Aligned_cols=221  Identities=17%  Similarity=0.196  Sum_probs=159.2

Q ss_pred             CCccceeEEEEcCCCCEEEEec--CCCeEEEEeCCC------------CeEEEEEeeecCCcceEEEEEeecCCCCeEEE
Q 022870           16 GHRASVTDVCFHQTKPILFAGT--TGGELRIWDTVQ------------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~--~dg~v~iwd~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (291)
                      .+...|.+++.+|+|..++||+  .||.++||+.+.            .+.+.++..|.+.  |.|+.|+|  ||.+||+
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~s--v~CVR~S~--dG~~lAs   86 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGS--VNCVRFSP--DGSYLAS   86 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCc--eeEEEECC--CCCeEee
Confidence            3466799999999999999999  899999998642            2334556667755  99999999  9999999


Q ss_pred             EeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccC
Q 022870           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (291)
Q Consensus        82 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (291)
                      |++|+.|.+|+.....  ....+.........                         +. ......+.+|..    ++|+
T Consensus        87 GSDD~~v~iW~~~~~~--~~~~fgs~g~~~~v-------------------------E~-wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEIG--SGTVFGSTGGAKNV-------------------------ES-WKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             ccCcceEEEeeecccC--Cccccccccccccc-------------------------ce-eeEEEEEecCCCccceeccC
Confidence            9999999999987511  00011000000000                         00 011112333444    8899


Q ss_pred             CCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (291)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (291)
                      |++..++  +++.|++|.+||.++.+.+..+.        +|.....    .+. |.|-   |+ ||++-+.|++|+||.
T Consensus       139 p~~~~lv--S~s~DnsViiwn~~tF~~~~vl~--------~H~s~VK----Gvs-~DP~---Gk-y~ASqsdDrtikvwr  199 (942)
T KOG0973|consen  139 PDDSLLV--SVSLDNSVIIWNAKTFELLKVLR--------GHQSLVK----GVS-WDPI---GK-YFASQSDDRTLKVWR  199 (942)
T ss_pred             CCccEEE--EecccceEEEEccccceeeeeee--------ccccccc----ceE-ECCc---cC-eeeeecCCceEEEEE
Confidence            9886443  78889999999999999999998        7855444    444 9998   55 999999999999999


Q ss_pred             ccCCCC---------------------------------------------------ceeeccccccceeEEEeec----
Q 022870          238 IRNPGI---------------------------------------------------PLTAMKVHLEPVLCLSIDE----  262 (291)
Q Consensus       238 ~~~~~~---------------------------------------------------~~~~~~~h~~~v~~~~~~~----  262 (291)
                      ..+.+.                                                   .-..|-||.+++..+.|+|    
T Consensus       200 t~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe  279 (942)
T KOG0973|consen  200 TSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFE  279 (942)
T ss_pred             cccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhc
Confidence            654110                                                   0223568999999999966    


Q ss_pred             --CC-----------CeeEEecCCCeEEEEEcCCCcee
Q 022870          263 --SC-----------NGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       263 --~~-----------~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                        ..           ..+|+||.|++|-||.....+.+
T Consensus       280 ~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl  317 (942)
T KOG0973|consen  280 RNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL  317 (942)
T ss_pred             cccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence              11           15789999999999998766544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1e-23  Score=177.40  Aligned_cols=215  Identities=20%  Similarity=0.336  Sum_probs=162.4

Q ss_pred             ccceeEEEEcCCCCE----EEEecCCCeEEEEeCCC---C---eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870           18 RASVTDVCFHQTKPI----LFAGTTGGELRIWDTVQ---H---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~----l~s~~~dg~v~iwd~~~---~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      ....+.|+|.+.|..    ||.|..||.|.+||...   +   ..+.+...|.+.  |..+.|++. .+++|++|+.||.
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~--V~gLDfN~~-q~nlLASGa~~ge  140 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGP--VLGLDFNPF-QGNLLASGADDGE  140 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCc--eeeeecccc-CCceeeccCCCCc
Confidence            456789999986655    89999999999999765   2   234556677755  999999995 4469999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (291)
                      |.|||+...+....+- .........+                                       ++|+..-.++++ +
T Consensus       141 I~iWDlnn~~tP~~~~-~~~~~~eI~~---------------------------------------lsWNrkvqhILA-S  179 (1049)
T KOG0307|consen  141 ILIWDLNKPETPFTPG-SQAPPSEIKC---------------------------------------LSWNRKVSHILA-S  179 (1049)
T ss_pred             EEEeccCCcCCCCCCC-CCCCcccceE---------------------------------------eccchhhhHHhh-c
Confidence            9999999865432111 0000000001                                       557777777777 5


Q ss_pred             cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC---CcEEEEEccCCCCc
Q 022870          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---GSILVWDIRNPGIP  244 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d---g~i~vwd~~~~~~~  244 (291)
                      ++.+|.+.|||++..+++..+..        +..  +..+..+. |+|+.. .  .|+++++|   -.|.+||+|....+
T Consensus       180 ~s~sg~~~iWDlr~~~pii~ls~--------~~~--~~~~S~l~-WhP~~a-T--ql~~As~dd~~PviqlWDlR~assP  245 (1049)
T KOG0307|consen  180 GSPSGRAVIWDLRKKKPIIKLSD--------TPG--RMHCSVLA-WHPDHA-T--QLLVASGDDSAPVIQLWDLRFASSP  245 (1049)
T ss_pred             cCCCCCceeccccCCCccccccc--------CCC--ccceeeee-eCCCCc-e--eeeeecCCCCCceeEeecccccCCc
Confidence            66689999999999988877763        322  24566776 999954 2  45555544   37999999988899


Q ss_pred             eeeccccccceeEEEeecCC-CeeEEecCCCeEEEEEcCCCceeeee
Q 022870          245 LTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ++.+++|...|.++.|.+.+ .+|+|++.|+.|.+|+.++++.+..+
T Consensus       246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~  292 (1049)
T KOG0307|consen  246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL  292 (1049)
T ss_pred             hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence            99999999999999997655 88999999999999999999988764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=2.9e-23  Score=160.83  Aligned_cols=243  Identities=17%  Similarity=0.208  Sum_probs=185.9

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC---eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      .|.+-|.++.++...++++||+. |.|+|||+...   ..+..+..-.....|.++...|  ||+.|++|++-.+|.|||
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEeccccceeeeee
Confidence            48888999999998899999986 78999998642   3455555444436699999999  999999999999999999


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCcc---ceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEE
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPY---ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  165 (291)
                      +......-  ...+......+  .....++.   .+.....+.+.+|++.+... ...+.+|.+    +.++++|.++. 
T Consensus       494 LAapTpri--kaeltssapaC--yALa~spDakvcFsccsdGnI~vwDLhnq~~-VrqfqGhtDGascIdis~dGtklW-  567 (705)
T KOG0639|consen  494 LAAPTPRI--KAELTSSAPAC--YALAISPDAKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISKDGTKLW-  567 (705)
T ss_pred             ccCCCcch--hhhcCCcchhh--hhhhcCCccceeeeeccCCcEEEEEccccee-eecccCCCCCceeEEecCCCceee-
Confidence            98764321  11222211111  22222222   22344556778888876644 456778877    88999999988 


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                       +|+.|.+||.||+++++.+....             ....++++. ++|.   +. ++++|-+++.+.|....  +...
T Consensus       568 -TGGlDntvRcWDlregrqlqqhd-------------F~SQIfSLg-~cP~---~d-WlavGMens~vevlh~s--kp~k  626 (705)
T KOG0639|consen  568 -TGGLDNTVRCWDLREGRQLQQHD-------------FSSQIFSLG-YCPT---GD-WLAVGMENSNVEVLHTS--KPEK  626 (705)
T ss_pred             -cCCCccceeehhhhhhhhhhhhh-------------hhhhheecc-cCCC---cc-ceeeecccCcEEEEecC--Cccc
Confidence             89999999999999988776554             355688887 9998   44 99999999999998877  4556


Q ss_pred             eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      +.+..|+..|.++.|.+.|+++++.+.|+.+..|...-|..+.
T Consensus       627 yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF  669 (705)
T KOG0639|consen  627 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  669 (705)
T ss_pred             eeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence            7788899999999999999999999999999999987776554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=8.8e-22  Score=160.88  Aligned_cols=261  Identities=15%  Similarity=0.162  Sum_probs=180.0

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCe-EEEEeCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGRD   85 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~d   85 (291)
                      .++.+++++++...|+++.=+|--..+|.|..+|+|.+++++.++.+.+++...+  .|++++|..  ||+. +++|+..
T Consensus       191 t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g--~VtslSFrt--DG~p~las~~~~  266 (910)
T KOG1539|consen  191 TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWG--RVTSLSFRT--DGNPLLASGRSN  266 (910)
T ss_pred             cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcccc--ceeEEEecc--CCCeeEEeccCC
Confidence            4578999999999999999999777999999999999999999999999985544  499999998  8775 5567777


Q ss_pred             CeEEEEECCCCCCCC------------------CCccccc--cceEEEEEee----------------------------
Q 022870           86 GTVKCWDIENGGLSS------------------NPSLTIK--TNSYHFCKLS----------------------------  117 (291)
Q Consensus        86 g~i~iwd~~~~~~~~------------------~~~~~~~--~~~~~~~~~~----------------------------  117 (291)
                      |.+.+||++..+...                  +|+..-.  ........+.                            
T Consensus       267 G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~  346 (910)
T KOG1539|consen  267 GDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ  346 (910)
T ss_pred             ceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence            999999998766332                  0000000  0000000000                            


Q ss_pred             --------------------------------------------------------------------------------
Q 022870          118 --------------------------------------------------------------------------------  117 (291)
Q Consensus       118 --------------------------------------------------------------------------------  117 (291)
                                                                                                      
T Consensus       347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t  426 (910)
T KOG1539|consen  347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT  426 (910)
T ss_pred             cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence                                                                                            


Q ss_pred             ---------------------------cccCccce---eccCCCCceeeecccCcccccc--CCCCCC--cccCCCCCcE
Q 022870          118 ---------------------------LVKEPYAN---AKQANEPKDCYEREVGETVDTD--SLCDSK--DDVPAEGPKY  163 (291)
Q Consensus       118 ---------------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~  163 (291)
                                                 +..+.++.   .....+....++++.+......  .+.|..  ...+-|+.+-
T Consensus       427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~  506 (910)
T KOG1539|consen  427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR  506 (910)
T ss_pred             EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc
Confidence                                       00000100   1111222333333333222221  123333  3344444433


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      ++++++.+|.++.||......+..+..       ++      .+..+. ++...  +  .++.+..|-.|+++|..+ .+
T Consensus       507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l-------~~------~~~~iv-~hr~s--~--l~a~~~ddf~I~vvD~~t-~k  567 (910)
T KOG1539|consen  507 LLVSAGADGILKFWDFKKKVLKKSLRL-------GS------SITGIV-YHRVS--D--LLAIALDDFSIRVVDVVT-RK  567 (910)
T ss_pred             eEEEccCcceEEEEecCCcceeeeecc-------CC------Ccceee-eeehh--h--hhhhhcCceeEEEEEchh-hh
Confidence            333666699999999999887777764       22      223332 44432  2  789999999999999999 89


Q ss_pred             ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      .++.+.+|.+.|++++|+|+|++|++++.|++||+||+.++.++..+
T Consensus       568 vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  568 VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence            99999999999999999999999999999999999999999998775

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=7.8e-23  Score=160.20  Aligned_cols=230  Identities=20%  Similarity=0.336  Sum_probs=168.6

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC--------CeEEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      -.++..|.+.|+.++|+|....|++++.||++++|++++        -+.+.+|.+|.++  |.|+++.+  ++..+++|
T Consensus       287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gP--Vl~v~v~~--n~~~~ysg  362 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGP--VLCVVVPS--NGEHCYSG  362 (577)
T ss_pred             eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCc--eEEEEecC--CceEEEee
Confidence            448889999999999999888999999999999999932        2567889999955  99999999  99999999


Q ss_pred             eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCC
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  158 (291)
                      +.||+|+.|++....-.      .                              +..........+.||.+    +++++
T Consensus       363 g~Dg~I~~w~~p~n~dp------~------------------------------ds~dp~vl~~~l~Ghtdavw~l~~s~  406 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDP------D------------------------------DSYDPSVLSGTLLGHTDAVWLLALSS  406 (577)
T ss_pred             ccCceeeeeccCCCCCc------c------------------------------cccCcchhccceeccccceeeeeecc
Confidence            99999999998732110      0                              00111122223444544    67787


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCC----------CCC-----------------------------
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS----------PNF-----------------------------  199 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~----------~~~-----------------------------  199 (291)
                      ...+++  +++.||++++|+.....+ .++...+....          ..|                             
T Consensus       407 ~~~~Ll--scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~  483 (577)
T KOG0642|consen  407 TKDRLL--SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS  483 (577)
T ss_pred             ccccee--eecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence            776665  666799999998865544 11111000000          000                             


Q ss_pred             CC-CcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEE
Q 022870          200 SS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL  278 (291)
Q Consensus       200 ~~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v  278 (291)
                      .. .....+.-+. ++|..+    +.+++.+|+.|+++|..+ +.++.....|...+++++++|+|.+|++++.|+.+++
T Consensus       484 ~~~~~~~~in~vV-s~~~~~----~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l  557 (577)
T KOG0642|consen  484 PGPRRYPQINKVV-SHPTAD----ITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL  557 (577)
T ss_pred             CcccccCccceEE-ecCCCC----eeEecccCCceecccccc-cccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence            00 0011223333 666532    899999999999999999 9999999999999999999999999999999999999


Q ss_pred             EEcCCCceeee
Q 022870          279 YNLDHSTVSHC  289 (291)
Q Consensus       279 w~~~~~~~~~~  289 (291)
                      |.+....+++.
T Consensus       558 ~kld~k~~~~e  568 (577)
T KOG0642|consen  558 WKLDVKTCVLE  568 (577)
T ss_pred             hhccchheeec
Confidence            99988776653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.1e-21  Score=161.96  Aligned_cols=247  Identities=15%  Similarity=0.161  Sum_probs=169.9

Q ss_pred             cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (291)
Q Consensus        15 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~   93 (291)
                      .+|+..-+.++|.|+|.+|++++.||.|++|+.... +...++..+.  ..|.+++-..    ++|++|+.+++|.+|.+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--~~v~~ia~~s----~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--ELVSSIACYS----NHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC--ceeEEEeecc----cceEEeeccceEEEeeC
Confidence            469999999999999999999999999999997665 4445554454  4488887654    79999999999999999


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecC
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE  169 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~  169 (291)
                      ..++...  ++.--..+...+.+.-.+... .+......+.+.+.... .....+.+|..    +.|+|.+..+ |+ .+
T Consensus        84 ps~~~~~--iL~Rftlp~r~~~v~g~g~~i-aagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fL-Av-ss  157 (933)
T KOG1274|consen   84 PSGEEDT--ILARFTLPIRDLAVSGSGKMI-AAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFL-AV-SS  157 (933)
T ss_pred             CCCCccc--eeeeeeccceEEEEecCCcEE-EeecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEE-EE-Ee
Confidence            8775432  222222333333333222211 11222223333333332 22334555555    8999998644 43 34


Q ss_pred             CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc
Q 022870          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (291)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (291)
                      -||.|++||+.++.+..++.....    .........+..++ |+|++  |  .++....|+.|.+|+..+ ..+...+.
T Consensus       158 ~dG~v~iw~~~~~~~~~tl~~v~k----~n~~~~s~i~~~~a-W~Pk~--g--~la~~~~d~~Vkvy~r~~-we~~f~Lr  227 (933)
T KOG1274|consen  158 CDGKVQIWDLQDGILSKTLTGVDK----DNEFILSRICTRLA-WHPKG--G--TLAVPPVDNTVKVYSRKG-WELQFKLR  227 (933)
T ss_pred             cCceEEEEEcccchhhhhcccCCc----cccccccceeeeee-ecCCC--C--eEEeeccCCeEEEEccCC-ceeheeec
Confidence            489999999999988777663110    11111134556665 99984  3  688888899999999887 66666655


Q ss_pred             --ccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          250 --VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       250 --~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                        .+...+..++|+|+|.|||+++.||.|.|||+++
T Consensus       228 ~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  228 DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence              3445589999999999999999999999999994

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=8.9e-23  Score=155.51  Aligned_cols=192  Identities=23%  Similarity=0.315  Sum_probs=143.4

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEE---E------------------EEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870           29 TKPILFAGTTGGELRIWDTVQHRTV---S------------------SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~---~------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .|+++|.|+.|..|.|||+.-...+   .                  ...+|.  +.|.+++|+.. -.+.|++||.|.+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT--davl~Ls~n~~-~~nVLaSgsaD~T  267 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT--DAVLALSWNRN-FRNVLASGSADKT  267 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch--HHHHHHHhccc-cceeEEecCCCce
Confidence            4679999999999999997531110   0                  112455  44889999874 3378999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (291)
                      |++||+.++++..  .++.+......                                        ++|+|....+++ +
T Consensus       268 V~lWD~~~g~p~~--s~~~~~k~Vq~----------------------------------------l~wh~~~p~~LL-s  304 (463)
T KOG0270|consen  268 VKLWDVDTGKPKS--SITHHGKKVQT----------------------------------------LEWHPYEPSVLL-S  304 (463)
T ss_pred             EEEEEcCCCCcce--ehhhcCCceeE----------------------------------------EEecCCCceEEE-e
Confidence            9999999997754  22322222222                                        558888777766 7


Q ss_pred             cCCcCeEEEEeCCCcce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          168 GEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      |+.|++|.+.|.|.... -..++             ..+.+-.+. |.|...   ..++++..||.|+-+|+|++++++.
T Consensus       305 Gs~D~~V~l~D~R~~~~s~~~wk-------------~~g~VEkv~-w~~~se---~~f~~~tddG~v~~~D~R~~~~~vw  367 (463)
T KOG0270|consen  305 GSYDGTVALKDCRDPSNSGKEWK-------------FDGEVEKVA-WDPHSE---NSFFVSTDDGTVYYFDIRNPGKPVW  367 (463)
T ss_pred             ccccceEEeeeccCccccCceEE-------------eccceEEEE-ecCCCc---eeEEEecCCceEEeeecCCCCCcee
Confidence            88999999999995322 12222             234455565 888733   3899999999999999999899999


Q ss_pred             eccccccceeEEEeecC-CCeeEEecCCCeEEEEEcCC
Q 022870          247 AMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~  283 (291)
                      ++++|.++|.+|++++. -.+|+++|.|+.|++|++..
T Consensus       368 t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  368 TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             EEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence            99999999999999543 33689999999999999864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.5e-21  Score=154.07  Aligned_cols=235  Identities=15%  Similarity=0.202  Sum_probs=174.6

Q ss_pred             EEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCc
Q 022870           24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS  103 (291)
Q Consensus        24 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  103 (291)
                      +.|+.. +.||.|. ...|.+|+..+++.......+.  ..|+++.|++  +|.+|++|..+|.|.|||..+.+...  .
T Consensus       183 ldWss~-n~laVal-g~~vylW~~~s~~v~~l~~~~~--~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~~--~  254 (484)
T KOG0305|consen  183 LDWSSA-NVLAVAL-GQSVYLWSASSGSVTELCSFGE--ELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKTR--T  254 (484)
T ss_pred             hhcccC-CeEEEEe-cceEEEEecCCCceEEeEecCC--CceEEEEECC--CCCEEEEeecCCeEEEEehhhccccc--c
Confidence            567744 3677664 3579999999888666655554  5599999999  99999999999999999998877654  2


Q ss_pred             ccc-ccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEe
Q 022870          104 LTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWD  178 (291)
Q Consensus       104 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd  178 (291)
                      +.. +........+.   ...............++++........+.+|..    +.|++++.++.  +|+.|+.+.|||
T Consensus       255 ~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lA--SGgnDN~~~Iwd  329 (484)
T KOG0305|consen  255 LRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLA--SGGNDNVVFIWD  329 (484)
T ss_pred             ccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeec--cCCCccceEecc
Confidence            222 22222222222   222334445556666777777655556777766    99999997654  788899999999


Q ss_pred             CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec--CCCcEEEEEccCCCCceeecccccccee
Q 022870          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (291)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (291)
                      ....+++..+.        .|    .+.+-+++ |+|... |  .||+|+  .|+.|++||..+ +..+..+.. ...|.
T Consensus       330 ~~~~~p~~~~~--------~H----~aAVKA~a-wcP~q~-~--lLAsGGGs~D~~i~fwn~~~-g~~i~~vdt-gsQVc  391 (484)
T KOG0305|consen  330 GLSPEPKFTFT--------EH----TAAVKALA-WCPWQS-G--LLATGGGSADRCIKFWNTNT-GARIDSVDT-GSQVC  391 (484)
T ss_pred             CCCccccEEEe--------cc----ceeeeEee-eCCCcc-C--ceEEcCCCcccEEEEEEcCC-CcEeccccc-CCcee
Confidence            98888888887        56    55677776 999854 3  788765  699999999998 888887765 67899


Q ss_pred             EEEeecCCCeeEEec--CCCeEEEEEcCCCceeee
Q 022870          257 CLSIDESCNGGISGG--ADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       257 ~~~~~~~~~~l~s~s--~dg~i~vw~~~~~~~~~~  289 (291)
                      +|.|++..+-|+++-  .++.|.||++.+.+.+..
T Consensus       392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~  426 (484)
T KOG0305|consen  392 SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE  426 (484)
T ss_pred             eEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence            999999987776543  477899999988666544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.2e-21  Score=150.11  Aligned_cols=241  Identities=17%  Similarity=0.296  Sum_probs=159.7

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC--eEEEEEeeecCCcceEEEEEeecCCCC-eEEEEeCCCeEEEEECC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIE   94 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~   94 (291)
                      .++|+++.|+|....|++|+.||+++||.+...  ..+..+....  .||.+..|.|  +|. .+++++....++.||+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecC--CCceEEEecccceEEEEeecc
Confidence            578999999999999999999999999998642  3455555555  5599999999  888 88999999999999999


Q ss_pred             CCCCCC-CCccccccceEEEEEeecccCccceeccCCCCc--eeeecccCccccc-cCCCCCC-cccCCCCCcEEEEecC
Q 022870           95 NGGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK--DCYEREVGETVDT-DSLCDSK-DDVPAEGPKYMAVAGE  169 (291)
Q Consensus        95 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~g~  169 (291)
                      +.+... .+.............++....   .....|..+  ..........+.. .+.+.-. ++|+.+++.++++ |+
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~---fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~-~~  364 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSN---FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLAS-GG  364 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCC---eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEE-cC
Confidence            887643 111111111112222222221   112222222  2222233333222 2333333 8899999877764 43


Q ss_pred             CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC-----CCc
Q 022870          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-----GIP  244 (291)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-----~~~  244 (291)
                       +|.|.+||+++..++..+...         ....+  ++++ .+++   |. +||+|+..|.|.|||.++.     .+|
T Consensus       365 -~GeV~v~nl~~~~~~~rf~D~---------G~v~g--ts~~-~S~n---g~-ylA~GS~~GiVNIYd~~s~~~s~~PkP  427 (514)
T KOG2055|consen  365 -TGEVYVWNLRQNSCLHRFVDD---------GSVHG--TSLC-ISLN---GS-YLATGSDSGIVNIYDGNSCFASTNPKP  427 (514)
T ss_pred             -CceEEEEecCCcceEEEEeec---------Cccce--eeee-ecCC---Cc-eEEeccCcceEEEeccchhhccCCCCc
Confidence             689999999999999888742         11122  2232 4555   44 9999999999999996531     122


Q ss_pred             eee-----------------------------------------cc------ccccceeEEEeecCCCeeEEecCCCeEE
Q 022870          245 LTA-----------------------------------------MK------VHLEPVLCLSIDESCNGGISGGADQKIV  277 (291)
Q Consensus       245 ~~~-----------------------------------------~~------~h~~~v~~~~~~~~~~~l~s~s~dg~i~  277 (291)
                      +..                                         +.      ..-+.|++|+|+|.+-+||.|..+|.+.
T Consensus       428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~  507 (514)
T KOG2055|consen  428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH  507 (514)
T ss_pred             hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence            110                                         00      1124689999999999999999999999


Q ss_pred             EEEcCC
Q 022870          278 LYNLDH  283 (291)
Q Consensus       278 vw~~~~  283 (291)
                      +|.+..
T Consensus       508 l~kL~h  513 (514)
T KOG2055|consen  508 LFKLHH  513 (514)
T ss_pred             eEeecc
Confidence            998753

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=2.2e-22  Score=155.72  Aligned_cols=218  Identities=15%  Similarity=0.179  Sum_probs=177.9

Q ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCC
Q 022870           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  100 (291)
                      -.|++......++++|+..+.|+|||+....+.+.++.|...  |+++.++.  ...+|++++..|.|.|..+.++....
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~st--vt~v~YN~--~DeyiAsvs~gGdiiih~~~t~~~tt  157 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQST--VTYVDYNN--TDEYIASVSDGGDIIIHGTKTKQKTT  157 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcce--eEEEEecC--CcceeEEeccCCcEEEEecccCcccc
Confidence            345555555579999999999999999977777888899855  99999998  66899999999999999999876533


Q ss_pred             CCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEE
Q 022870          101 NPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVE  175 (291)
Q Consensus       101 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~  175 (291)
                        .+.... .......+++..........+.+.+..|++.....+......|..    ++|+|..+.++++.|. |..|.
T Consensus       158 --~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~-Dkki~  234 (673)
T KOG4378|consen  158 --TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY-DKKIN  234 (673)
T ss_pred             --ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc-cceEE
Confidence              334442 333455666666667777888899999999998888777777766    9999999998887775 99999


Q ss_pred             EEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccce
Q 022870          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV  255 (291)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v  255 (291)
                      +||++..+....+..             ..+..+++ |.++   |. +|++|+..|.|..||++....|+..+..|...|
T Consensus       235 ~yD~~s~~s~~~l~y-------------~~Plstva-f~~~---G~-~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sV  296 (673)
T KOG4378|consen  235 IYDIRSQASTDRLTY-------------SHPLSTVA-FSEC---GT-YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASV  296 (673)
T ss_pred             Eeecccccccceeee-------------cCCcceee-ecCC---ce-EEEeecCCceEEEEecccCCCCceEeeecccce
Confidence            999998877766653             33556666 9998   55 999999999999999998789999999999999


Q ss_pred             eEEEeecC
Q 022870          256 LCLSIDES  263 (291)
Q Consensus       256 ~~~~~~~~  263 (291)
                      ++++|-+.
T Consensus       297 t~vafq~s  304 (673)
T KOG4378|consen  297 TRVAFQPS  304 (673)
T ss_pred             eEEEeeec
Confidence            99999554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.90  E-value=1.1e-21  Score=147.69  Aligned_cols=208  Identities=18%  Similarity=0.310  Sum_probs=154.7

Q ss_pred             EecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870           13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      .+.||+++|..++|+| +...+|+|+.|.+|+||++..+       +.+..+.+|...  |--++|+|. ..+.|++++.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rr--Vg~V~wHPt-A~NVLlsag~  152 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRR--VGLVQWHPT-APNVLLSAGS  152 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeeccee--EEEEeeccc-chhhHhhccC
Confidence            4689999999999999 7778999999999999998754       356678889855  999999996 4488999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      |.+|.+||+.+++..-    ++........                                       ++|+.+|..+.
T Consensus       153 Dn~v~iWnv~tgeali----~l~hpd~i~S---------------------------------------~sfn~dGs~l~  189 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALI----TLDHPDMVYS---------------------------------------MSFNRDGSLLC  189 (472)
T ss_pred             CceEEEEeccCCceee----ecCCCCeEEE---------------------------------------EEeccCCceee
Confidence            9999999999997532    3332211111                                       55889997655


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec---CCCcEEEEEccCC
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDIRNP  241 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---~dg~i~vwd~~~~  241 (291)
                        +.+.|+.|++||.++++.+..-.        +|.......+.    |-.+   |. ++.+|.   .+..+-+||..+.
T Consensus       190 --TtckDKkvRv~dpr~~~~v~e~~--------~heG~k~~Rai----fl~~---g~-i~tTGfsr~seRq~aLwdp~nl  251 (472)
T KOG0303|consen  190 --TTCKDKKVRVIDPRRGTVVSEGV--------AHEGAKPARAI----FLAS---GK-IFTTGFSRMSERQIALWDPNNL  251 (472)
T ss_pred             --eecccceeEEEcCCCCcEeeecc--------cccCCCcceeE----Eecc---Cc-eeeeccccccccceeccCcccc
Confidence              66789999999999999988875        67554433332    6554   44 555553   5789999999886


Q ss_pred             CCceee--ccccccceeEEEeecCCCeeE-EecCCCeEEEEEcCCCc
Q 022870          242 GIPLTA--MKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHST  285 (291)
Q Consensus       242 ~~~~~~--~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~vw~~~~~~  285 (291)
                      .+++..  +.. +..|.-=-|+++..++. +|-.|+.||.|+++...
T Consensus       252 ~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  252 EEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            666543  333 23344344588888775 55579999999998765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=5.8e-22  Score=148.34  Aligned_cols=211  Identities=18%  Similarity=0.294  Sum_probs=150.3

Q ss_pred             CCCceEEecCCccceeEEEEcC--CCCEEEEecCCCeEEEEeCCCCeEE---EEEeeecCCcceEEEEEeecCCCCeEEE
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTV---SSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (291)
                      ..+|+.++.+|...=+.|+|||  .| .|+||.--+.|++|...++.-.   ..+.+|...  |-.++|+|. ....|++
T Consensus       200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~S--VEDLqWSpt-E~~vfaS  275 (440)
T KOG0302|consen  200 EFRPLFTFNGHKGEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKS--VEDLQWSPT-EDGVFAS  275 (440)
T ss_pred             ccCceEEecccCccceeeeccccccc-ccccCccccceEeeeeccCceeecCccccccccc--hhhhccCCc-cCceEEe
Confidence            4478999999999999999999  44 6888888889999998876432   234567744  999999997 3479999


Q ss_pred             EeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (291)
Q Consensus        82 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (291)
                      ||.||+|+|||++.+....  ....+.+......                                      +.|+....
T Consensus       276 cS~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNV--------------------------------------ISWnr~~~  315 (440)
T KOG0302|consen  276 CSCDGSIRIWDIRSGPKKA--AVSTKAHNSDVNV--------------------------------------ISWNRREP  315 (440)
T ss_pred             eecCceEEEEEecCCCccc--eeEeeccCCceee--------------------------------------EEccCCcc
Confidence            9999999999999875432  1111222111111                                      44666655


Q ss_pred             cEEEEecCCcCeEEEEeCCCc---ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870          162 KYMAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (291)
                       +++ +|+.||+++|||+|+.   +++..|+        -|    +.+++++. |+|...  . .|++++.|..|.+||+
T Consensus       316 -lLa-sG~DdGt~~iwDLR~~~~~~pVA~fk--------~H----k~pItsie-W~p~e~--s-~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  316 -LLA-SGGDDGTLSIWDLRQFKSGQPVATFK--------YH----KAPITSIE-WHPHED--S-VIAASGEDNQITIWDL  377 (440)
T ss_pred             -eee-ecCCCceEEEEEhhhccCCCcceeEE--------ec----cCCeeEEE-eccccC--c-eEEeccCCCcEEEEEe
Confidence             444 7888999999999864   4666776        34    66889998 999843  2 8999999999999998


Q ss_pred             cCCCC---------------ceeecccc--ccceeEEEeecCCC-eeEEecCCCeEEEEE
Q 022870          239 RNPGI---------------PLTAMKVH--LEPVLCLSIDESCN-GGISGGADQKIVLYN  280 (291)
Q Consensus       239 ~~~~~---------------~~~~~~~h--~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~  280 (291)
                      .....               |-+.+--|  ...+..+.|+++-. +|++.+.|| +.||.
T Consensus       378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            64111               11122234  34688899976432 678888888 45543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=2.8e-20  Score=144.40  Aligned_cols=239  Identities=14%  Similarity=0.152  Sum_probs=159.8

Q ss_pred             EecCC-ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           13 VLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        13 ~l~~h-~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      .++.+ ++-|.|++|.++| -++||.++|.|.||+..+.+..+....|.  ..|.++....  + ..|++|+.|..|..|
T Consensus       240 ~fek~ekk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~~L~~lr--~-GtllSGgKDRki~~W  313 (626)
T KOG2106|consen  240 IFEKREKKFVLCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVHAHD--GGVFSLCMLR--D-GTLLSGGKDRKIILW  313 (626)
T ss_pred             ccccccceEEEEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEeeecC--CceEEEEEec--C-ccEeecCccceEEec
Confidence            44443 3679999999998 58899999999999998877777777777  4599999998  7 456669999999999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEe
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVA  167 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  167 (291)
                      |-. -+..++  .+++........+... .+.  .........+..-...+.......+|..    ++.+|+.+.++  +
T Consensus       314 d~~-y~k~r~--~elPe~~G~iRtv~e~-~~d--i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~--T  385 (626)
T KOG2106|consen  314 DDN-YRKLRE--TELPEQFGPIRTVAEG-KGD--ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLL--T  385 (626)
T ss_pred             ccc-cccccc--ccCchhcCCeeEEecC-CCc--EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhhee--e
Confidence            932 222221  1121111111111111 011  1111111111111111112222233433    88899987665  6


Q ss_pred             cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (291)
                      ++.|+.+++|+  ..++..+..             ....+.++. |+|.   |  .++.|+..|...+.|.++ ...+..
T Consensus       386 ~gqdk~v~lW~--~~k~~wt~~-------------~~d~~~~~~-fhps---g--~va~Gt~~G~w~V~d~e~-~~lv~~  443 (626)
T KOG2106|consen  386 CGQDKHVRLWN--DHKLEWTKI-------------IEDPAECAD-FHPS---G--VVAVGTATGRWFVLDTET-QDLVTI  443 (626)
T ss_pred             ccCcceEEEcc--CCceeEEEE-------------ecCceeEee-ccCc---c--eEEEeeccceEEEEeccc-ceeEEE
Confidence            66799999999  445554443             234566676 9998   4  799999999999999997 555554


Q ss_pred             ccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      -.. .++++.+.|+|+|.+||.|+.|+.|++|.++.+...+
T Consensus       444 ~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y  483 (626)
T KOG2106|consen  444 HTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY  483 (626)
T ss_pred             Eec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence            444 8899999999999999999999999999998755443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.4e-21  Score=149.82  Aligned_cols=201  Identities=19%  Similarity=0.225  Sum_probs=147.6

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCC---------CCeEEEEEeeecCCcceEEEEEeecCCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV---------QHRTVSSSWVHSAAHGIVSVATGPSIGLN   77 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   77 (291)
                      .++.+..+.+|=.+|+|+.|+.||.+|+||+.||.|.+|.+.         +-+.++.+..|.-+  |+++...+..-..
T Consensus       112 sG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls--ITDl~ig~Gg~~~  189 (476)
T KOG0646|consen  112 SGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS--ITDLQIGSGGTNA  189 (476)
T ss_pred             cccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce--eEEEEecCCCccc
Confidence            346677788999999999999999999999999999999863         23567778888855  9999988721236


Q ss_pred             eEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccC
Q 022870           78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP  157 (291)
Q Consensus        78 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (291)
                      +++|+|.|.++++||+..+.++.    ++.......+                                       ++.+
T Consensus       190 rl~TaS~D~t~k~wdlS~g~LLl----ti~fp~si~a---------------------------------------v~lD  226 (476)
T KOG0646|consen  190 RLYTASEDRTIKLWDLSLGVLLL----TITFPSSIKA---------------------------------------VALD  226 (476)
T ss_pred             eEEEecCCceEEEEEeccceeeE----EEecCCccee---------------------------------------EEEc
Confidence            99999999999999999987644    2211111111                                       4467


Q ss_pred             CCCCcEEEEecCCcCeEEEEeCCCcce--------eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC
Q 022870          158 AEGPKYMAVAGEQLSEVEIWDLNTAER--------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (291)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (291)
                      |-+..++  .|..+|.|.+.++.....        ...........+.||..+  ..+++++ ++-|   |. .|++|+.
T Consensus       227 pae~~~y--iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~--~~ITcLa-is~D---gt-lLlSGd~  297 (476)
T KOG0646|consen  227 PAERVVY--IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE--SAITCLA-ISTD---GT-LLLSGDE  297 (476)
T ss_pred             ccccEEE--ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC--cceeEEE-EecC---cc-EEEeeCC
Confidence            7777666  688899999988764331        111111112233366543  3566776 7777   44 9999999


Q ss_pred             CCcEEEEEccCCCCceeeccccccceeEEEeec
Q 022870          230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE  262 (291)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~  262 (291)
                      ||.|+|||+.+ .++++++....++|+.+.+.|
T Consensus       298 dg~VcvWdi~S-~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  298 DGKVCVWDIYS-KQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             CCCEEEEecch-HHHHHHHhhhccccceeEeec
Confidence            99999999998 899998886688999999854

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.5e-22  Score=169.21  Aligned_cols=219  Identities=17%  Similarity=0.237  Sum_probs=167.0

Q ss_pred             CceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      ..+.++..|++.|..+.|++ .+++||+|+.||.|.|||+++-+...........+.|.+++|+.. ..+.|++++.+|.
T Consensus       107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~  185 (1049)
T KOG0307|consen  107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGR  185 (1049)
T ss_pred             HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCC
Confidence            34677888999999999999 556999999999999999987655444422223356999999985 3478999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (291)
                      +.|||++..+.    ++.+....... .++.                                   ++|+|++..-++++
T Consensus       186 ~~iWDlr~~~p----ii~ls~~~~~~-~~S~-----------------------------------l~WhP~~aTql~~A  225 (1049)
T KOG0307|consen  186 AVIWDLRKKKP----IIKLSDTPGRM-HCSV-----------------------------------LAWHPDHATQLLVA  225 (1049)
T ss_pred             ceeccccCCCc----ccccccCCCcc-ceee-----------------------------------eeeCCCCceeeeee
Confidence            99999998754    32333222110 0000                                   66999987776655


Q ss_pred             cCCcC--eEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          168 GEQLS--EVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       168 g~~d~--~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                      ...|+  .|.+||+|.-. +++.++        +|.    .-++++. |++.+  .+ +|++++.|+.|.+|+.++ ++.
T Consensus       226 s~dd~~PviqlWDlR~assP~k~~~--------~H~----~Gilsls-Wc~~D--~~-lllSsgkD~~ii~wN~~t-gEv  288 (1049)
T KOG0307|consen  226 SGDDSAPVIQLWDLRFASSPLKILE--------GHQ----RGILSLS-WCPQD--PR-LLLSSGKDNRIICWNPNT-GEV  288 (1049)
T ss_pred             cCCCCCceeEeecccccCCchhhhc--------ccc----cceeeec-cCCCC--ch-hhhcccCCCCeeEecCCC-ceE
Confidence            54443  49999998654 556665        663    3567777 99873  23 999999999999999999 899


Q ss_pred             eeeccccccceeEEEeecCCC-eeEEecCCCeEEEEEcCCCc
Q 022870          245 LTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~~  285 (291)
                      +..+.....++..+.|.|... ++++++.||.|.|+.+.+..
T Consensus       289 l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  289 LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999988889999999977655 78889999999999998654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=1.7e-21  Score=151.20  Aligned_cols=200  Identities=19%  Similarity=0.311  Sum_probs=159.9

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      .+..-.-..++++.+||.+..+++..||.|.|||+.+...++.|++|.  +.+.||..++  +|..|.+|+-|.+||.||
T Consensus       504 eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht--DGascIdis~--dGtklWTGGlDntvRcWD  579 (705)
T KOG0639|consen  504 ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISK--DGTKLWTGGLDNTVRCWD  579 (705)
T ss_pred             hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC--CCceeEEecC--CCceeecCCCccceeehh
Confidence            344334557789999999999999999999999999999999999999  4599999999  999999999999999999


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (291)
                      +++++...+       +......|+                                    +.++|.++.++  .|-.++
T Consensus       580 lregrqlqq-------hdF~SQIfS------------------------------------Lg~cP~~dWla--vGMens  614 (705)
T KOG0639|consen  580 LREGRQLQQ-------HDFSSQIFS------------------------------------LGYCPTGDWLA--VGMENS  614 (705)
T ss_pred             hhhhhhhhh-------hhhhhhhee------------------------------------cccCCCcccee--eecccC
Confidence            999875441       111111122                                    44789998665  577788


Q ss_pred             eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc
Q 022870          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (291)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~  252 (291)
                      .+.+......+. ..+.        -    +...+.++. |.+.   |+ ++++.+.|..+..|..-- +..+...+. .
T Consensus       615 ~vevlh~skp~k-yqlh--------l----heScVLSlK-Fa~c---Gk-wfvStGkDnlLnawrtPy-GasiFqskE-~  674 (705)
T KOG0639|consen  615 NVEVLHTSKPEK-YQLH--------L----HESCVLSLK-FAYC---GK-WFVSTGKDNLLNAWRTPY-GASIFQSKE-S  674 (705)
T ss_pred             cEEEEecCCccc-eeec--------c----cccEEEEEE-eccc---Cc-eeeecCchhhhhhccCcc-ccceeeccc-c
Confidence            888887765432 2332        2    366889998 9998   55 999999999999999877 666666664 6


Q ss_pred             cceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          253 EPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       253 ~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      ..|.++..+-|.++++|||.|....||.+
T Consensus       675 SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  675 SSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             CcceeeeeccCceEEEecCCCcceEEEEE
Confidence            78999999999999999999999998875

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3e-20  Score=136.17  Aligned_cols=204  Identities=12%  Similarity=0.166  Sum_probs=138.4

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .+.++-+.||...|++|+.+|-+..+++++.|++|++||++..++...+.....    ..++|.|  +|-++|++.....
T Consensus        90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----pi~AfDp--~GLifA~~~~~~~  163 (311)
T KOG1446|consen   90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----PIAAFDP--EGLIFALANGSEL  163 (311)
T ss_pred             CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----cceeECC--CCcEEEEecCCCe
Confidence            467889999999999999999888999999999999999998888877765443    4678999  8888888888889


Q ss_pred             EEEEECCCCCCCCCCccccc---cceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-------cccC
Q 022870           88 VKCWDIENGGLSSNPSLTIK---TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-------DDVP  157 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  157 (291)
                      |++||++.-..-.-..+.+.   ........++..+.........+ ...+.+--.+. +...+..+..       .+|+
T Consensus       164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~~~lDAf~G~-~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-FIYLLDAFDGT-VKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-cEEEEEccCCc-EeeeEeeccCCCCcceeEEEC
Confidence            99999987533211122222   22333444444443332222211 11222221111 2222222111       7899


Q ss_pred             CCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (291)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (291)
                      ||++.++  +|+.||+|.+|+++++..+..+.        +.   ..+.+.++. |+|.      +..-++.+..+.+|=
T Consensus       242 Pds~Fvl--~gs~dg~i~vw~~~tg~~v~~~~--------~~---~~~~~~~~~-fnP~------~~mf~sa~s~l~fw~  301 (311)
T KOG1446|consen  242 PDSKFVL--SGSDDGTIHVWNLETGKKVAVLR--------GP---NGGPVSCVR-FNPR------YAMFVSASSNLVFWL  301 (311)
T ss_pred             CCCcEEE--EecCCCcEEEEEcCCCcEeeEec--------CC---CCCCccccc-cCCc------eeeeeecCceEEEEe
Confidence            9998766  78889999999999999999888        32   245566776 9997      455555566788886


Q ss_pred             cc
Q 022870          238 IR  239 (291)
Q Consensus       238 ~~  239 (291)
                      ..
T Consensus       302 p~  303 (311)
T KOG1446|consen  302 PD  303 (311)
T ss_pred             cc
Confidence            55

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=4.9e-21  Score=141.03  Aligned_cols=246  Identities=15%  Similarity=0.170  Sum_probs=151.9

Q ss_pred             CCCCceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEE---eeecCCcceEEEEEeecCCCCeEEE
Q 022870            6 PPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSS---WVHSAAHGIVSVATGPSIGLNKVIS   81 (291)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s   81 (291)
                      ...++...+.+|...|+.+.|+| +.+++++|+.|..||+||+++..++..+   .+|...  |.++.|++  +|.+|++
T Consensus       123 ~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde--VLSvD~~~--~gd~i~S  198 (385)
T KOG1034|consen  123 VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE--VLSVDFSL--DGDRIAS  198 (385)
T ss_pred             chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc--EEEEEEcC--CCCeeec
Confidence            44567788999999999999999 4578999999999999999999999886   457755  99999999  9999999


Q ss_pred             EeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc--cc-ccCCCCCC--ccc
Q 022870           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--VD-TDSLCDSK--DDV  156 (291)
Q Consensus        82 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~--~~~  156 (291)
                      ++.|.+|++|++...+....    +...    ..+.+.....             .+.....  +. ....-|..  -+.
T Consensus       199 cGmDhslk~W~l~~~~f~~~----lE~s----~~~~~~~t~~-------------pfpt~~~~fp~fst~diHrnyVDCv  257 (385)
T KOG1034|consen  199 CGMDHSLKLWRLNVKEFKNK----LELS----ITYSPNKTTR-------------PFPTPKTHFPDFSTTDIHRNYVDCV  257 (385)
T ss_pred             cCCcceEEEEecChhHHhhh----hhhh----cccCCCCccC-------------cCCccccccccccccccccchHHHH
Confidence            99999999999986543221    0000    0000000000             0000000  00 00011111  111


Q ss_pred             CCCCCcEEEEecCCcCeEEEEeC-CCcceeeEeccccc-CCCCCCCCCcceeeeeEE-EecCCCCCCceEEEeecCCCcE
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDL-NTAERCTRLHQNSC-GGSPNFSSKGRGMCMAVQ-AYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                      -.-|+.++  +-+-++.|..|.. +-++.+...+.... ....++-......++-+. +|.|-   ++ .||.|.+.|.|
T Consensus       258 rw~gd~il--SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~---~~-~la~gnq~g~v  331 (385)
T KOG1034|consen  258 RWFGDFIL--SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW---QK-MLALGNQSGKV  331 (385)
T ss_pred             HHHhhhee--ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH---HH-HHhhccCCCcE
Confidence            12344333  4444689999987 22222222211000 000011111233334443 25554   33 89999999999


Q ss_pred             EEEEccCCCCcee-eccc--cccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          234 LVWDIRNPGIPLT-AMKV--HLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       234 ~vwd~~~~~~~~~-~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      ++||+++...+.. ++..  ....|...+|+.++..|+...+|++|--||.-
T Consensus       332 ~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  332 YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9999997333221 2221  23578999999999999999999999999864

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.87  E-value=6e-21  Score=138.41  Aligned_cols=210  Identities=18%  Similarity=0.205  Sum_probs=149.1

Q ss_pred             CCccceeEEEEcCCC-----CEEEEecCCCeEEEEeCCC--CeE--EEEEee---ecCCcceEEEEEeecCCCCeEEEEe
Q 022870           16 GHRASVTDVCFHQTK-----PILFAGTTGGELRIWDTVQ--HRT--VSSSWV---HSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~-----~~l~s~~~dg~v~iwd~~~--~~~--~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      .|.-+++.+.|.|+.     .+|||.+.  .+|+|.+..  .+.  ...+..   .....|+++..|+.. +.+++.+.|
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igtSS  170 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGTSS  170 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-CcceeEeec
Confidence            488899999999965     35666543  799999873  221  111111   122267999999976 668999999


Q ss_pred             CCCeEEEEECCCCCC--CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870           84 RDGTVKCWDIENGGL--SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (291)
                      -|-+..|||++++..  +...+ ..+......                                        ++|...+.
T Consensus       171 iDTTCTiWdie~~~~~~vkTQL-IAHDKEV~D----------------------------------------Iaf~~~s~  209 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQL-IAHDKEVYD----------------------------------------IAFLKGSR  209 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEE-EecCcceeE----------------------------------------EEeccCcc
Confidence            999999999998622  11000 001111110                                        66888888


Q ss_pred             cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC-CcEEEEEccC
Q 022870          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIRN  240 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d-g~i~vwd~~~  240 (291)
                      .+|++.|. ||.+|+||+|..+.-..+-+.       . . .......++ |++..+  + ++|+-..| ..|.|.|+|.
T Consensus       210 ~~FASvga-DGSvRmFDLR~leHSTIIYE~-------p-~-~~~pLlRLs-wnkqDp--n-ymATf~~dS~~V~iLDiR~  275 (364)
T KOG0290|consen  210 DVFASVGA-DGSVRMFDLRSLEHSTIIYED-------P-S-PSTPLLRLS-WNKQDP--N-YMATFAMDSNKVVILDIRV  275 (364)
T ss_pred             ceEEEecC-CCcEEEEEecccccceEEecC-------C-C-CCCcceeec-cCcCCc--h-HHhhhhcCCceEEEEEecC
Confidence            88886665 999999999987755444321       1 1 134456665 887633  2 77776554 5799999999


Q ss_pred             CCCceeeccccccceeEEEeecC-CCeeEEecCCCeEEEEEcCC
Q 022870          241 PGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~  283 (291)
                      +..++..+++|.+.|++++|.|. ...|+|+++|..+.+||+++
T Consensus       276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            99999999999999999999774 45789999999999999976

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.3e-20  Score=154.22  Aligned_cols=206  Identities=17%  Similarity=0.248  Sum_probs=152.7

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      .|...+-++++++|+.+|+++|.|+.|-.|++-+..+......+++|..+  |.++.|+|  .+++|++.+.||.|++||
T Consensus        91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap--Vl~l~~~p--~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP--VLQLSYDP--KGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc--eeeeeEcC--CCCEEEEEecCceEEEEE
Confidence            44556778999999999999999999999999999999888999999955  99999999  999999999999999999


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (291)
                      +.++.+........+..........                           .       .++|+|++..+++. + .|+
T Consensus       167 ~~~~~~~~tl~~v~k~n~~~~s~i~---------------------------~-------~~aW~Pk~g~la~~-~-~d~  210 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEFILSRIC---------------------------T-------RLAWHPKGGTLAVP-P-VDN  210 (933)
T ss_pred             cccchhhhhcccCCcccccccccee---------------------------e-------eeeecCCCCeEEee-c-cCC
Confidence            9988664311111111111100000                           0       06799998887764 3 379


Q ss_pred             eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc
Q 022870          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (291)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~  252 (291)
                      .|++|+...++....+...       +   .......++ |+|.   |+ |||+++.||.|.|||.++ ...    ....
T Consensus       211 ~Vkvy~r~~we~~f~Lr~~-------~---~ss~~~~~~-wsPn---G~-YiAAs~~~g~I~vWnv~t-~~~----~~~~  270 (933)
T KOG1274|consen  211 TVKVYSRKGWELQFKLRDK-------L---SSSKFSDLQ-WSPN---GK-YIAASTLDGQILVWNVDT-HER----HEFK  270 (933)
T ss_pred             eEEEEccCCceeheeeccc-------c---cccceEEEE-EcCC---Cc-EEeeeccCCcEEEEeccc-chh----cccc
Confidence            9999999999988888742       1   122255565 9998   55 999999999999999997 211    2224


Q ss_pred             cceeEEEeecCCCeeEEecCCCeEEE
Q 022870          253 EPVLCLSIDESCNGGISGGADQKIVL  278 (291)
Q Consensus       253 ~~v~~~~~~~~~~~l~s~s~dg~i~v  278 (291)
                      ..|.+++|.|+.+.+-.-...|...+
T Consensus       271 ~~Vc~~aw~p~~n~it~~~~~g~~~~  296 (933)
T KOG1274|consen  271 RAVCCEAWKPNANAITLITALGTLGV  296 (933)
T ss_pred             ceeEEEecCCCCCeeEEEeecccccc
Confidence            68999999988876644444444333

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.87  E-value=4.6e-20  Score=133.79  Aligned_cols=216  Identities=17%  Similarity=0.191  Sum_probs=154.6

Q ss_pred             CceEEec-CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE-EEEEeeec---CCcceEEEEEeecCCCCeEEEEe
Q 022870            9 DPVAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-VSSSWVHS---AAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus         9 ~~~~~l~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      +++..|. .|-+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+....   .....++-+|+|.-+++.+++.+
T Consensus       113 E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~  191 (370)
T KOG1007|consen  113 ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS  191 (370)
T ss_pred             hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence            3455566 5667999999999998888765 78999999987765 33332211   11337888999966788888766


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                       |+++..||+++.+...    .+........ ..                                    +.|+|+-.++
T Consensus       192 -d~tl~~~D~RT~~~~~----sI~dAHgq~v-rd------------------------------------lDfNpnkq~~  229 (370)
T KOG1007|consen  192 -DSTLQFWDLRTMKKNN----SIEDAHGQRV-RD------------------------------------LDFNPNKQHI  229 (370)
T ss_pred             -CCcEEEEEccchhhhc----chhhhhccee-ee------------------------------------ccCCCCceEE
Confidence             6899999999876533    2221110000 00                                    5699998888


Q ss_pred             EEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                      ++++ +.||.|++||.|.-+ +++.+.        +|    ...++++. |+|..  .+ +|++|+.|..|.+|....-.
T Consensus       230 lvt~-gDdgyvriWD~R~tk~pv~el~--------~H----sHWvW~VR-fn~~h--dq-LiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  230 LVTC-GDDGYVRIWDTRKTKFPVQELP--------GH----SHWVWAVR-FNPEH--DQ-LILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             EEEc-CCCccEEEEeccCCCccccccC--------CC----ceEEEEEE-ecCcc--ce-EEEecCCCceeEEEeccccc
Confidence            8754 459999999999654 556666        55    55899998 99983  34 89999999999999754211


Q ss_pred             ----------------------------CceeeccccccceeEEEeecCCC-eeEEecCCCeEEEEEcCCC
Q 022870          243 ----------------------------IPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       243 ----------------------------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~  284 (291)
                                                  ..+.++..|++.|.+++|+.-.. .+|+-|.||.+.|=++...
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence                                        02446778999999999954444 5689999999998776544

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.87  E-value=3.3e-20  Score=138.36  Aligned_cols=174  Identities=22%  Similarity=0.336  Sum_probs=140.5

Q ss_pred             eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCC
Q 022870           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN  130 (291)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (291)
                      ..+.+|..|...  |.+++.+|  +.++++||+.|..-.+|++.++....  ..+.+......                 
T Consensus        55 dS~~tF~~H~~s--vFavsl~P--~~~l~aTGGgDD~AflW~~~~ge~~~--eltgHKDSVt~-----------------  111 (399)
T KOG0296|consen   55 DSLVTFDKHTDS--VFAVSLHP--NNNLVATGGGDDLAFLWDISTGEFAG--ELTGHKDSVTC-----------------  111 (399)
T ss_pred             cceeehhhcCCc--eEEEEeCC--CCceEEecCCCceEEEEEccCCccee--EecCCCCceEE-----------------
Confidence            456678889855  99999999  77999999999999999999987533  22233333322                 


Q ss_pred             CCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeE
Q 022870          131 EPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV  210 (291)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (291)
                                             +.|+.+|.+ +| +|..+|.|+||+..++.....+..+           .. -+.=+
T Consensus       112 -----------------------~~Fshdgtl-LA-TGdmsG~v~v~~~stg~~~~~~~~e-----------~~-dieWl  154 (399)
T KOG0296|consen  112 -----------------------CSFSHDGTL-LA-TGDMSGKVLVFKVSTGGEQWKLDQE-----------VE-DIEWL  154 (399)
T ss_pred             -----------------------EEEccCceE-EE-ecCCCccEEEEEcccCceEEEeecc-----------cC-ceEEE
Confidence                                   448888854 33 8999999999999999877776421           12 23334


Q ss_pred             EEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       211 ~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      . |+|.   +. +|++|+.||.+.+|.+.+ +...+.+.+|..++++=.|.|+|+.++++..||+|++|+..+++.++++
T Consensus       155 ~-WHp~---a~-illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~  228 (399)
T KOG0296|consen  155 K-WHPR---AH-ILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKI  228 (399)
T ss_pred             E-eccc---cc-EEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEe
Confidence            4 9996   44 999999999999999998 6788899999999999999999999999999999999999999988764

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.87  E-value=1.4e-20  Score=136.52  Aligned_cols=213  Identities=18%  Similarity=0.247  Sum_probs=151.4

Q ss_pred             EEecCCccceeEEEEcC-CCCEEEEecCC-------CeEEEEeCCCC---------eEEEEEe-eecCCcceEEEEEeec
Q 022870           12 AVLRGHRASVTDVCFHQ-TKPILFAGTTG-------GELRIWDTVQH---------RTVSSSW-VHSAAHGIVSVATGPS   73 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~-~~~~l~s~~~d-------g~v~iwd~~~~---------~~~~~~~-~~~~~~~v~~~~~~~~   73 (291)
                      ..|..|.+.|+.++-+| +...|+|+-.+       ..+.||.+...         +++..+. .+.  ..|.|+.|.| 
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav--g~i~cvew~P-  133 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV--GKINCVEWEP-  133 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh--CceeeEEEcC-
Confidence            45677899999999999 56677776442       24779998643         2233333 233  3499999999 


Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC
Q 022870           74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK  153 (291)
Q Consensus        74 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (291)
                       ++..+++-. |..|.+|++.........+ ..+........+..                                   
T Consensus       134 -ns~klasm~-dn~i~l~~l~ess~~vaev-~ss~s~e~~~~fts-----------------------------------  175 (370)
T KOG1007|consen  134 -NSDKLASMD-DNNIVLWSLDESSKIVAEV-LSSESAEMRHSFTS-----------------------------------  175 (370)
T ss_pred             -CCCeeEEec-cCceEEEEcccCcchheee-cccccccccceecc-----------------------------------
Confidence             888888766 7789999998775421101 00000000000000                                   


Q ss_pred             cccCC--CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC
Q 022870          154 DDVPA--EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (291)
Q Consensus       154 ~~~~~--~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (291)
                      -+|+|  ++ +.+++++  |+++..||+|+.++...++.       +|    ...+..+. |+|+   .+.+|++|+.||
T Consensus       176 g~WspHHdg-nqv~tt~--d~tl~~~D~RT~~~~~sI~d-------AH----gq~vrdlD-fNpn---kq~~lvt~gDdg  237 (370)
T KOG1007|consen  176 GAWSPHHDG-NQVATTS--DSTLQFWDLRTMKKNNSIED-------AH----GQRVRDLD-FNPN---KQHILVTCGDDG  237 (370)
T ss_pred             cccCCCCcc-ceEEEeC--CCcEEEEEccchhhhcchhh-------hh----cceeeecc-CCCC---ceEEEEEcCCCc
Confidence            34777  44 3444343  68999999999888877775       45    33567776 9998   455999999999


Q ss_pred             cEEEEEccCCCCceeeccccccceeEEEeecC-CCeeEEecCCCeEEEEEcCC
Q 022870          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~  283 (291)
                      .|++||.|....++.++.+|..+|+++.|+|. .+++.+||.|..|.+|...+
T Consensus       238 yvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  238 YVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             cEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            99999999988999999999999999999774 45678999999999997653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.87  E-value=9.7e-20  Score=148.90  Aligned_cols=257  Identities=18%  Similarity=0.192  Sum_probs=171.0

Q ss_pred             CCceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeE--EE--EEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870            8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT--VS--SSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      ..|...+. -..+|+|++|+| +..+++.|..+|+|.+||+..+..  ..  ....+.+.++|+.+.|.....+.-++++
T Consensus       233 ~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~  311 (555)
T KOG1587|consen  233 NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSL  311 (555)
T ss_pred             CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEE
Confidence            45666666 467899999999 778999999999999999987654  22  2334445577999999873333569999


Q ss_pred             eCCCeEEEEECCCCCCCCCCccc-c-c------cceEEEEEeecccCccceeccCCCCceeeec--ccCcc-c------c
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLT-I-K------TNSYHFCKLSLVKEPYANAKQANEPKDCYER--EVGET-V------D  145 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~-~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~------~  145 (291)
                      +.||.|..|+++......+.... . .      ........+.+..........+...+.++..  ..... .      .
T Consensus       312 ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~  391 (555)
T KOG1587|consen  312 SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH  391 (555)
T ss_pred             ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence            99999999988765442211100 0 0      0011111112221112222222233333321  11111 1      1


Q ss_pred             ccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCC-CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCC
Q 022870          146 TDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (291)
Q Consensus       146 ~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  220 (291)
                      .....|..    +.++|.+..+++++|  |.+++||... ...++..+..        +    ...+++++ |+|..+. 
T Consensus       392 ~~~~~h~g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~~--------~----~~~v~~va-WSptrpa-  455 (555)
T KOG1587|consen  392 STFITHIGPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLDS--------S----PDYVTDVA-WSPTRPA-  455 (555)
T ss_pred             ccccccCcceEeeecCCCccceeeeec--cceeEeccccCCCCcchhhhh--------c----cceeeeeE-EcCcCce-
Confidence            12223333    889999998888666  7999999988 5566666652        2    34578887 9998552 


Q ss_pred             ceEEEeecCCCcEEEEEccC-CCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          221 FVNVLAGYEDGSILVWDIRN-PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                        .++++..||.|.+||+.. ...|+.+...+....+.+.|+++|+.|+.|...|.+++|++..
T Consensus       456 --vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  456 --VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             --EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence              899999999999999964 2467777776667778888899999999999999999999964

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=6.1e-19  Score=138.71  Aligned_cols=232  Identities=10%  Similarity=0.092  Sum_probs=148.6

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeE-EEEeCCCeEEEEECCCCCCCCCCccccccc
Q 022870           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (291)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  109 (291)
                      ..+++++.|+.|++||+.+++.+..+..+.   .+.+++|+|  ++..+ ++++.++.|++||..+++...  .+.... 
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~--~~~~~~-   73 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIG--TLPSGP-   73 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEE--eccCCC-
Confidence            578899999999999999999888887653   267899999  88876 567788999999998876533  111111 


Q ss_pred             eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC--CcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeE
Q 022870          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS--KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR  187 (291)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~  187 (291)
                      ......+.+.................|++..............  .++|+|++..+++ +...+..+.+||.++++....
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~-~~~~~~~~~~~d~~~~~~~~~  152 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVN-TSETTNMAHFIDTKTYEIVDN  152 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEE-EecCCCeEEEEeCCCCeEEEE
Confidence            1122223322221212222345667777766543322211221  2889999976654 333234678889988776654


Q ss_pred             ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc-----c--ceeEEEe
Q 022870          188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-----E--PVLCLSI  260 (291)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-----~--~v~~~~~  260 (291)
                      ...       ++      ....+. |+|+   |+.+++++..++.|++||+++ ++.+..+..+.     .  ....++|
T Consensus       153 ~~~-------~~------~~~~~~-~s~d---g~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~  214 (300)
T TIGR03866       153 VLV-------DQ------RPRFAE-FTAD---GKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKL  214 (300)
T ss_pred             EEc-------CC------CccEEE-ECCC---CCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEE
Confidence            431       11      123454 9988   542335556799999999998 66655544221     1  2356889


Q ss_pred             ecCCCeeE-EecCCCeEEEEEcCCCceeee
Q 022870          261 DESCNGGI-SGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       261 ~~~~~~l~-s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      +|++++++ +.+.++.+.+||+++++++..
T Consensus       215 s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~  244 (300)
T TIGR03866       215 TKDGKTAFVALGPANRVAVVDAKTYEVLDY  244 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            99999754 445577899999998887654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=8.1e-20  Score=146.74  Aligned_cols=259  Identities=16%  Similarity=0.160  Sum_probs=165.8

Q ss_pred             CceEEecCCccceeEEEEcCCCC---EEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~---~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      ....+++||.++|+|+.|-|+..   ++++|+.|+.|++|.++...  ++..+++|.    +.++++..  .........
T Consensus        45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~----~~~~cv~a--~~~~~~~~~  118 (764)
T KOG1063|consen   45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC----KECVCVVA--RSSVMTCKA  118 (764)
T ss_pred             eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc----eeEEEEEe--eeeEEEeec
Confidence            35678999999999999999776   89999999999999998443  445555544    45555554  212333347


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc----cccccCCCCCC----cc
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE----TVDTDSLCDSK----DD  155 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~  155 (291)
                      .|+++.+||.+..+......+.+.........++....+.......++......+-...    .....+.+|.+    ++
T Consensus       119 ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~  198 (764)
T KOG1063|consen  119 ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLA  198 (764)
T ss_pred             cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhh
Confidence            89999999996555211111222222211122223333344455555555555443333    44556788888    88


Q ss_pred             cCCCCC-cEEEEecCCcCeEEEEeCCCcceee---------------------Eec--ccccCCCCCCCCCcceeeeeEE
Q 022870          156 VPAEGP-KYMAVAGEQLSEVEIWDLNTAERCT---------------------RLH--QNSCGGSPNFSSKGRGMCMAVQ  211 (291)
Q Consensus       156 ~~~~~~-~~~~~~g~~d~~i~~wd~~~~~~~~---------------------~~~--~~~~~~~~~~~~~~~~~~~~~~  211 (291)
                      |...+. .+++++++.|..||||.+.-+....                     .+.  .....-..||    ...++++.
T Consensus       199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH----eDWV~sv~  274 (764)
T KOG1063|consen  199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH----EDWVYSVW  274 (764)
T ss_pred             hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc----ccceEEEE
Confidence            876655 7777799999999999875332100                     000  0000111244    55788887


Q ss_pred             EecCCCCCCceEEEeecCCCcEEEEEccCCCC------------------------------------------------
Q 022870          212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI------------------------------------------------  243 (291)
Q Consensus       212 ~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~------------------------------------------------  243 (291)
                       |+|.   +. .|++++.|.++.+|...+..-                                                
T Consensus       275 -W~p~---~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~  349 (764)
T KOG1063|consen  275 -WHPE---GL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT  349 (764)
T ss_pred             -Eccc---hh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc
Confidence             9987   33 688888888888886543100                                                


Q ss_pred             ---ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          244 ---PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       244 ---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                         ....+.||.+.|.+++|+|.|.+|++.|.|.+-|++-.-
T Consensus       350 ~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w  391 (764)
T KOG1063|consen  350 FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW  391 (764)
T ss_pred             ceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence               012234788899999999999999999999998887654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.86  E-value=5.7e-20  Score=133.77  Aligned_cols=177  Identities=16%  Similarity=0.241  Sum_probs=128.6

Q ss_pred             cCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCC-eEEEEeCCCeEEEEE
Q 022870           15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWD   92 (291)
Q Consensus        15 ~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd   92 (291)
                      .+|+-.|.++.|-| |.-++.+++.|.+++|||.++-+....|+..   +.|++-+++|..-.+ ++++|..|-.|++-|
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me---~~VYshamSp~a~sHcLiA~gtr~~~VrLCD  174 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME---GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD  174 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC---ceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence            47899999999999 5558889999999999999999888888765   449999999854333 566777888999999


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (291)
                      +..+.+..    ++..+......                                      +.|+|..+.+++ +|+.||
T Consensus       175 i~SGs~sH----~LsGHr~~vla--------------------------------------V~Wsp~~e~vLa-tgsaDg  211 (397)
T KOG4283|consen  175 IASGSFSH----TLSGHRDGVLA--------------------------------------VEWSPSSEWVLA-TGSADG  211 (397)
T ss_pred             ccCCccee----eeccccCceEE--------------------------------------EEeccCceeEEE-ecCCCc
Confidence            99997754    33333222221                                      558999887776 788899


Q ss_pred             eEEEEeCCCc-ceeeEecccc--cCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          173 EVEIWDLNTA-ERCTRLHQNS--CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       173 ~i~~wd~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                      .|++||++.. -+...+....  ..+.......+.+.+..++ |..+   |. ++++.+.|..+++|+..++.
T Consensus       212 ~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla-~tSd---~~-~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  212 AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA-WTSD---AR-YLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             eEEEEEeecccceeEEeecccCccCccccccccccceeeeee-eccc---ch-hhhhccCccceEEeecccCc
Confidence            9999999865 3444443211  0000011122456677776 9887   55 89999999999999998743

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.1e-20  Score=141.89  Aligned_cols=205  Identities=19%  Similarity=0.219  Sum_probs=146.1

Q ss_pred             eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCC
Q 022870           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  101 (291)
                      .+++|+++|..|++|+.||++|||+..+...+.....|..+  |.++.|+|  ||..|++.+.| ..+||+.+++.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~e--V~DL~FS~--dgk~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAE--VKDLDFSP--DGKFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCc--cccceeCC--CCcEEEEecCC-ceEEEEeccCchhhh
Confidence            78999999999999999999999998877777777777755  99999999  99999999999 899999999854431


Q ss_pred             CccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCC---CcEEEEecCCcCeEEEEe
Q 022870          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG---PKYMAVAGEQLSEVEIWD  178 (291)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~d~~i~~wd  178 (291)
                      ..-.-.......|                                        .|+.++   ...+++.-..-+.|+.||
T Consensus       223 ~t~~~k~~~~~~c----------------------------------------RF~~d~~~~~l~laa~~~~~~~v~~~~  262 (398)
T KOG0771|consen  223 KTPFSKDEMFSSC----------------------------------------RFSVDNAQETLRLAASQFPGGGVRLCD  262 (398)
T ss_pred             cCCcccchhhhhc----------------------------------------eecccCCCceEEEEEecCCCCceeEEE
Confidence            1100111111112                                        133332   233443444456677777


Q ss_pred             CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEE
Q 022870          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL  258 (291)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~  258 (291)
                      +.....-..++.       .........+.++. .+++   |+ +++.|+.||.|-|++..+.......-+.|...|+.+
T Consensus       263 ~~~w~~~~~l~~-------~~~~~~~~siSsl~-VS~d---Gk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l  330 (398)
T KOG0771|consen  263 ISLWSGSNFLRL-------RKKIKRFKSISSLA-VSDD---GK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL  330 (398)
T ss_pred             eeeeccccccch-------hhhhhccCcceeEE-EcCC---Cc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeE
Confidence            654432111110       00001122466676 8887   55 999999999999999998444455566899999999


Q ss_pred             EeecCCCeeEEecCCCeEEEEEcCC
Q 022870          259 SIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      .|+|+.+++++.+.|..+.|..+.-
T Consensus       331 tF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  331 TFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEcCCcCcccccccCCceeEEEEee
Confidence            9999999999999999999988765

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4.1e-20  Score=135.63  Aligned_cols=248  Identities=13%  Similarity=0.149  Sum_probs=144.1

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      +.+.|.+|..+|++++||++|+.|+|++.|..|++||+..|.+++.+...   +||+.+.|+|... +.+++.-.+..-.
T Consensus        57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~---spv~~~q~hp~k~-n~~va~~~~~sp~  132 (405)
T KOG1273|consen   57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---SPVWGAQWHPRKR-NKCVATIMEESPV  132 (405)
T ss_pred             hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc---CccceeeeccccC-CeEEEEEecCCcE
Confidence            45678899999999999999999999999999999999999998888754   5588888888533 3333332233333


Q ss_pred             EEECCCCCCCCCCc---cccccc-e-EEEEEeecccCccceeccCCCCceeeecccCccccccC-CCCCC---cccCCCC
Q 022870           90 CWDIENGGLSSNPS---LTIKTN-S-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS-LCDSK---DDVPAEG  160 (291)
Q Consensus        90 iwd~~~~~~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~  160 (291)
                      +-++...+...-+.   ..+... . .....   . ..........+...+++......+.... ...+.   +.++-.|
T Consensus       133 vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr---~-g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g  208 (405)
T KOG1273|consen  133 VIDFSDPKHSVLPKDDDGDLNSSASHGVFDR---R-GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG  208 (405)
T ss_pred             EEEecCCceeeccCCCccccccccccccccC---C-CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC
Confidence            33333211100000   000000 0 00000   0 0000001111222222222222111110 00011   5577777


Q ss_pred             CcEEEEecCCcCeEEEEeCCCcc---------eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CC
Q 022870          161 PKYMAVAGEQLSEVEIWDLNTAE---------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-ED  230 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~d  230 (291)
                      +.++  ..+.|+.||.|+++.--         +.++++.           -.+...+.-++|+.+   |. |+++|+ ..
T Consensus       209 ~~li--iNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD-----------vVNk~~Wk~ccfs~d---ge-Yv~a~s~~a  271 (405)
T KOG1273|consen  209 RFLI--INTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD-----------VVNKLQWKKCCFSGD---GE-YVCAGSARA  271 (405)
T ss_pred             cEEE--EecCCceEEEEehhhhcccCccCCcChhHHHHH-----------HHhhhhhhheeecCC---cc-EEEeccccc
Confidence            7666  45568999999987311         1122211           011111221248876   66 565554 55


Q ss_pred             CcEEEEEccCCCCceeeccccc-cceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          231 GSILVWDIRNPGIPLTAMKVHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      ..++||.... +..++.+.|.. .....+.|+|-...+++- ..|.+++|.....
T Consensus       272 HaLYIWE~~~-GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  272 HALYIWEKSI-GSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             eeEEEEecCC-cceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence            7899999888 99999999877 578899999998888887 6889999987653

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.85  E-value=6.2e-19  Score=137.06  Aligned_cols=207  Identities=22%  Similarity=0.402  Sum_probs=159.9

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCC--------eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGG--------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg--------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      .+.+.||+..|.|++.+|+.-.+++|-.-|        .|++||..+-+.++.+....  ..|.+++|++.+.|.+++..
T Consensus        97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~--~GV~~vaFsk~~~G~~l~~v  174 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFD--RGVTCVAFSKINGGSLLCAV  174 (626)
T ss_pred             cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeecccc--ccceeeeecccCCCceEEEe
Confidence            456779999999999999988888876555        49999988877777776444  55999999998677777654


Q ss_pred             --eCCCeEEEEECCCCCCCCCCccccccc-eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCC
Q 022870           83 --GRDGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE  159 (291)
Q Consensus        83 --~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (291)
                        +.+..+.+||...+....    ..+.. .....                                       .+|+|.
T Consensus       175 D~s~~h~lSVWdWqk~~~~~----~vk~sne~v~~---------------------------------------a~FHPt  211 (626)
T KOG2106|consen  175 DDSNPHMLSVWDWQKKAKLG----PVKTSNEVVFL---------------------------------------ATFHPT  211 (626)
T ss_pred             cCCCccccchhhchhhhccC----cceeccceEEE---------------------------------------EEeccC
Confidence              345679999998765433    12111 11111                                       449999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      ++++++++|-  +.+.+|+.+.+....+..        .+....+..+.+++ |.++   |  -+++|..+|.|.||+..
T Consensus       212 d~nliit~Gk--~H~~Fw~~~~~~l~k~~~--------~fek~ekk~Vl~v~-F~en---g--dviTgDS~G~i~Iw~~~  275 (626)
T KOG2106|consen  212 DPNLIITCGK--GHLYFWTLRGGSLVKRQG--------IFEKREKKFVLCVT-FLEN---G--DVITGDSGGNILIWSKG  275 (626)
T ss_pred             CCcEEEEeCC--ceEEEEEccCCceEEEee--------ccccccceEEEEEE-EcCC---C--CEEeecCCceEEEEeCC
Confidence            9999987664  899999999887665543        23333457889998 9998   4  49999999999999998


Q ss_pred             CCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      + .+..+....|.+.|.+++.-.+|. |+||+.|..|..||
T Consensus       276 ~-~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd  314 (626)
T KOG2106|consen  276 T-NRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD  314 (626)
T ss_pred             C-ceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc
Confidence            7 666666669999999999999997 55699999999999

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.85  E-value=1.2e-19  Score=148.54  Aligned_cols=197  Identities=18%  Similarity=0.243  Sum_probs=155.8

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEE---eeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS---WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~   94 (291)
                      ...+++++.++-|++.+.|...|.|-+|++.+|-...++   ..|..+  |+.++...  -++.+++++.+|.++.||..
T Consensus       448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~--V~gla~D~--~n~~~vsa~~~Gilkfw~f~  523 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE--VTGLAVDG--TNRLLVSAGADGILKFWDFK  523 (910)
T ss_pred             CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc--eeEEEecC--CCceEEEccCcceEEEEecC
Confidence            367899999999999999999999999999999888888   467755  99999987  66789999999999999998


Q ss_pred             CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeE
Q 022870           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (291)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  174 (291)
                      +.....    .+........                                       +..+... .+++ .+..|-.|
T Consensus       524 ~k~l~~----~l~l~~~~~~---------------------------------------iv~hr~s-~l~a-~~~ddf~I  558 (910)
T KOG1539|consen  524 KKVLKK----SLRLGSSITG---------------------------------------IVYHRVS-DLLA-IALDDFSI  558 (910)
T ss_pred             Ccceee----eeccCCCcce---------------------------------------eeeeehh-hhhh-hhcCceeE
Confidence            775432    1111111000                                       1122222 2343 44558899


Q ss_pred             EEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccc
Q 022870          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (291)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~  254 (291)
                      +++|+.+.+.++.+.        ||..    .++++. |+|+   |+ .|++++.|++|++||+.+ +..+..+.- ..+
T Consensus       559 ~vvD~~t~kvvR~f~--------gh~n----ritd~~-FS~D---gr-WlisasmD~tIr~wDlpt-~~lID~~~v-d~~  619 (910)
T KOG1539|consen  559 RVVDVVTRKVVREFW--------GHGN----RITDMT-FSPD---GR-WLISASMDSTIRTWDLPT-GTLIDGLLV-DSP  619 (910)
T ss_pred             EEEEchhhhhhHHhh--------cccc----ceeeeE-eCCC---Cc-EEEEeecCCcEEEEeccC-cceeeeEec-CCc
Confidence            999999999999998        8855    456665 9998   66 999999999999999999 787777764 678


Q ss_pred             eeEEEeecCCCeeEEecCC-CeEEEEEcC
Q 022870          255 VLCLSIDESCNGGISGGAD-QKIVLYNLD  282 (291)
Q Consensus       255 v~~~~~~~~~~~l~s~s~d-g~i~vw~~~  282 (291)
                      .+++.|+|+|.+||+...| .-|++|.-.
T Consensus       620 ~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  620 CTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             ceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            8999999999999999998 669999643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=4.8e-19  Score=130.47  Aligned_cols=237  Identities=13%  Similarity=0.184  Sum_probs=161.4

Q ss_pred             ccceeEEEEc-------CCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCc---ceEEEEEeecCCCCeEEEEeCCCe
Q 022870           18 RASVTDVCFH-------QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH---GIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus        18 ~~~v~~l~~~-------~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      ...|...+|-       |+.+++|+.+.|.-|++||.-+|+...++.+-.+.+   ...+++|+|  ||.+|++|.. ..
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~--DGeqlfaGyk-rc  180 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP--DGEQLFAGYK-RC  180 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC--CCCeEeeccc-ce
Confidence            4567777775       567799999999999999999999888876543222   357999999  9999988765 69


Q ss_pred             EEEEEC-CCCCCCC-CCcccc-c---cceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccC
Q 022870           88 VKCWDI-ENGGLSS-NPSLTI-K---TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (291)
Q Consensus        88 i~iwd~-~~~~~~~-~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (291)
                      |+++|+ +.++... .+.+.. +   ..-.....+++..........-+....++.-...+.. ..+-+|..    +.|.
T Consensus       181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl-~llggh~gGvThL~~~  259 (406)
T KOG2919|consen  181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL-QLLGGHGGGVTHLQWC  259 (406)
T ss_pred             EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce-eeecccCCCeeeEEec
Confidence            999999 4443321 111111 1   1122223333333333333444444455544444333 33346655    8999


Q ss_pred             CCCCcEEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870          158 AEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (291)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (291)
                      ++|+.++. .+..|..|..||+|... ++..+.        +|....+-.+.    |.-+. .++ +|++|+.||.|++|
T Consensus       260 edGn~lfs-GaRk~dkIl~WDiR~~~~pv~~L~--------rhv~~TNQRI~----FDld~-~~~-~LasG~tdG~V~vw  324 (406)
T KOG2919|consen  260 EDGNKLFS-GARKDDKILCWDIRYSRDPVYALE--------RHVGDTNQRIL----FDLDP-KGE-ILASGDTDGSVRVW  324 (406)
T ss_pred             cCcCeecc-cccCCCeEEEEeehhccchhhhhh--------hhccCccceEE----EecCC-CCc-eeeccCCCccEEEE
Confidence            99998773 34457889999999654 555565        55443333332    44332 266 99999999999999


Q ss_pred             EccCCCCceeeccccccceeEEEeecCCCeeEEecCC
Q 022870          237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD  273 (291)
Q Consensus       237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  273 (291)
                      |+++.+.++..+..|+..++.++++|-..++++++..
T Consensus       325 dlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  325 DLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            9999888899999999999999999998888888754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.9e-19  Score=133.39  Aligned_cols=197  Identities=18%  Similarity=0.239  Sum_probs=143.4

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccce
Q 022870           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (291)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  110 (291)
                      ..+|++...|.|++||..+++.+..++++...  +..++|......+.+.+++.||+|++||++..........+-....
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~--~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPAT--TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCc--ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            46889999999999999999999999998865  8899997743457899999999999999998765432111111100


Q ss_pred             EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCC-CCcEEEEecC----CcCeEEEEeCCCcce-
Q 022870          111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE-GPKYMAVAGE----QLSEVEIWDLNTAER-  184 (291)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~----~d~~i~~wd~~~~~~-  184 (291)
                      ..                                         .+|... ..++++ +|.    .+-.|.+||+|..+. 
T Consensus       119 ~f-----------------------------------------~~ld~nck~~ii~-~GtE~~~s~A~v~lwDvR~~qq~  156 (376)
T KOG1188|consen  119 PF-----------------------------------------ICLDLNCKKNIIA-CGTELTRSDASVVLWDVRSEQQL  156 (376)
T ss_pred             cc-----------------------------------------eEeeccCcCCeEE-eccccccCceEEEEEEeccccch
Confidence            11                                         112222 123333 443    267799999998876 


Q ss_pred             eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC--CceeeccccccceeEEEeec
Q 022870          185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG--IPLTAMKVHLEPVLCLSIDE  262 (291)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~  262 (291)
                      +..+..       .|    ..-++.+. |+|..++   .|++|+.||.|.+||++...  ..+...-.|...|..+.|..
T Consensus       157 l~~~~e-------SH----~DDVT~lr-FHP~~pn---lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~  221 (376)
T KOG1188|consen  157 LRQLNE-------SH----NDDVTQLR-FHPSDPN---LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLS  221 (376)
T ss_pred             hhhhhh-------hc----cCcceeEE-ecCCCCC---eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeec
Confidence            665554       45    45678887 9998553   99999999999999997532  23334445778899999966


Q ss_pred             CC-CeeEEecCCCeEEEEEcCCCce
Q 022870          263 SC-NGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       263 ~~-~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      ++ +.|.+-+......+|+++.+..
T Consensus       222 ~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  222 KKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             CCcceEEEEEccCceeEEEccCCCh
Confidence            65 4588889999999999998763

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-19  Score=140.73  Aligned_cols=241  Identities=12%  Similarity=0.161  Sum_probs=156.0

Q ss_pred             ceeEEEEcCCCC-EEEEecCCCeEEEEeCCCCe---EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870           20 SVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        20 ~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~   95 (291)
                      .+.++.|+.... .+++-+.|..+++|.-. ++   ....-+...  +.-.|++...  ...++++|+..+.|+|||++.
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~g--d~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~  110 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTG--DNAFCVACAS--QSLYEISGGQSGCVKIWDLRA  110 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEeccc-CCCCccceeecccc--chHHHHhhhh--cceeeeccCcCceeeehhhHH
Confidence            488999988653 23444668889999843 33   111111111  1234555444  447899999999999999995


Q ss_pred             CCCCCCCccccccceEEEEEeecccCcc-ceeccCCCCceeeecccCccccccCCC-CCC---cccCCCCCcEEEEecCC
Q 022870           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLC-DSK---DDVPAEGPKYMAVAGEQ  170 (291)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~g~~  170 (291)
                      ..+.+    .++.+......+....... ......++.+.+..+............ .+.   +.|+|..+.++.+ .+.
T Consensus       111 kl~hr----~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~-asd  185 (673)
T KOG4378|consen  111 KLIHR----FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSI-ASD  185 (673)
T ss_pred             HHHhh----hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEe-ecc
Confidence            44322    2333322222222222222 222333444444444333222211111 111   7899998877764 556


Q ss_pred             cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc
Q 022870          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (291)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (291)
                      +|.|.+||+....+...+..       .|..+    +..++ |+|.   .+.+|++.+.|..|.+||.+. .+....+..
T Consensus       186 ~G~VtlwDv~g~sp~~~~~~-------~HsAP----~~gic-fsps---ne~l~vsVG~Dkki~~yD~~s-~~s~~~l~y  249 (673)
T KOG4378|consen  186 KGAVTLWDVQGMSPIFHASE-------AHSAP----CRGIC-FSPS---NEALLVSVGYDKKINIYDIRS-QASTDRLTY  249 (673)
T ss_pred             CCeEEEEeccCCCcccchhh-------hccCC----cCcce-ecCC---ccceEEEecccceEEEeeccc-ccccceeee
Confidence            99999999998888877764       56554    44444 9998   333899999999999999997 666666654


Q ss_pred             cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       251 h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                       +.+..+++|.++|.+|+.|+..|.|..||++..+-.
T Consensus       250 -~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  250 -SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             -cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence             789999999999999999999999999999976543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.84  E-value=7.9e-19  Score=142.05  Aligned_cols=255  Identities=13%  Similarity=0.168  Sum_probs=175.0

Q ss_pred             EecCCccceeEEEEcC-C----------CCEEEEecCCCeEEEEeCCCC---eEEEE--E--------------------
Q 022870           13 VLRGHRASVTDVCFHQ-T----------KPILFAGTTGGELRIWDTVQH---RTVSS--S--------------------   56 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~-~----------~~~l~s~~~dg~v~iwd~~~~---~~~~~--~--------------------   56 (291)
                      .+--|...|+.+.--| +          ..-+.|++.|++|++||++.+   +..+.  +                    
T Consensus       364 s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~  443 (1080)
T KOG1408|consen  364 SMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA  443 (1080)
T ss_pred             eeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence            3444888888876544 1          126899999999999998752   11100  0                    


Q ss_pred             ----------eeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEE--EEEeecccCc--
Q 022870           57 ----------WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH--FCKLSLVKEP--  122 (291)
Q Consensus        57 ----------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--  122 (291)
                                ........+.+++.+|  +|..|++|..-|.|++|++...+...    .+..+...  ...++.....  
T Consensus       444 ~~~~fdka~~s~~d~r~G~R~~~vSp--~gqhLAsGDr~GnlrVy~Lq~l~~~~----~~eAHesEilcLeyS~p~~~~k  517 (1080)
T KOG1408|consen  444 SAGIFDKALVSTCDSRFGFRALAVSP--DGQHLASGDRGGNLRVYDLQELEYTC----FMEAHESEILCLEYSFPVLTNK  517 (1080)
T ss_pred             cCCcccccchhhcCcccceEEEEECC--CcceecccCccCceEEEEehhhhhhh----heecccceeEEEeecCchhhhH
Confidence                      0011124589999999  99999999999999999998776533    33333332  2222222111  


Q ss_pred             cceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCc-EEEEecCCcCeEEEEeCCC-cceeeEecccccCCC
Q 022870          123 YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK-YMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGS  196 (291)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~~~~  196 (291)
                      .......+..++++++.........+.+|..    +.|...|-+ -++ +++.|+.|. |+... ......+..      
T Consensus       518 LLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi-scGADksim-Fr~~qk~~~g~~f~r------  589 (1080)
T KOG1408|consen  518 LLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI-SCGADKSIM-FRVNQKASSGRLFPR------  589 (1080)
T ss_pred             hhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE-eccCchhhh-eehhccccCceeccc------
Confidence            1223334455677788877778888888877    677666532 334 455577654 44433 222233332      


Q ss_pred             CCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc---cccceeEEEeecCCCeeEEecCC
Q 022870          197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---HLEPVLCLSIDESCNGGISGGAD  273 (291)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d  273 (291)
                       +|........+.+. ..|...    ++++++.|..|+|||+.+ ++..+.|++   |++....+..+|.|.|||+...|
T Consensus       590 -~t~t~~ktTlYDm~-Vdp~~k----~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd  662 (1080)
T KOG1408|consen  590 -HTQTLSKTTLYDMA-VDPTSK----LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD  662 (1080)
T ss_pred             -cccccccceEEEee-eCCCcc----eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecC
Confidence             34344566788887 888743    899999999999999999 888888874   66778889999999999999999


Q ss_pred             CeEEEEEcCCCceee
Q 022870          274 QKIVLYNLDHSTVSH  288 (291)
Q Consensus       274 g~i~vw~~~~~~~~~  288 (291)
                      .++.++|+-+++++-
T Consensus       663 ktl~~~Df~sgEcvA  677 (1080)
T KOG1408|consen  663 KTLCFVDFVSGECVA  677 (1080)
T ss_pred             CceEEEEeccchhhh
Confidence            999999999998764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=6.5e-19  Score=129.79  Aligned_cols=242  Identities=17%  Similarity=0.201  Sum_probs=168.9

Q ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEeCCCC------------eEEEEEeeecCCcceEEEEEeec-----CCCCeEEEEe
Q 022870           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQH------------RTVSSSWVHSAAHGIVSVATGPS-----IGLNKVISQG   83 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~s~~   83 (291)
                      ...+.|+|||..|++-+.|..+.+|++...            +...+++...+ ..|...+|-+.     .+.+++++.+
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg-~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEG-ETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccC-CEEEEEEeeeccccCCCccceeeecc
Confidence            456899999999999999999999997531            11122222222 45888888631     1567899999


Q ss_pred             CCCeEEEEECCCCCCCCCCcccc-ccceEEEEEeecccCccceeccCC--CCceeeec-ccCccc---cccCCCC---CC
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQAN--EPKDCYER-EVGETV---DTDSLCD---SK  153 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~---~~~~~~~---~~  153 (291)
                      .|.-|++||..+++...  .+.. ........+++..+++....+..+  ..++++++ ++++..   .....+.   .+
T Consensus       131 r~~PIh~wdaftG~lra--Sy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRA--SYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             ccCceeeeecccccccc--chhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            99999999999998644  2221 111222233444455554444433  44556666 333321   1111111   11


Q ss_pred             ----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-
Q 022870          154 ----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-  228 (291)
Q Consensus       154 ----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-  228 (291)
                          ++|+|....+++ .|+....+-||.-..+.++..+-        +|    .+-++-+. |.++   |. .|.+|. 
T Consensus       209 iisc~a~sP~~~~~~a-~gsY~q~~giy~~~~~~pl~llg--------gh----~gGvThL~-~~ed---Gn-~lfsGaR  270 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLA-VGSYGQRVGIYNDDGRRPLQLLG--------GH----GGGVTHLQ-WCED---GN-KLFSGAR  270 (406)
T ss_pred             eeeeeeccCCCCccee-eecccceeeeEecCCCCceeeec--------cc----CCCeeeEE-eccC---cC-eeccccc
Confidence                899999887777 56667889999888888888877        66    45667776 9998   44 666665 


Q ss_pred             CCCcEEEEEccCCCCceeecccccc-ceeEEEe--ecCCCeeEEecCCCeEEEEEcCC
Q 022870          229 EDGSILVWDIRNPGIPLTAMKVHLE-PVLCLSI--DESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~--~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      .|-.|..||+|....++..+..|.+ .-..|.|  +|++++|++|+.||.|++||+.+
T Consensus       271 k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  271 KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             CCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            5789999999988899999998877 4456666  79999999999999999999987

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.84  E-value=3.1e-19  Score=143.42  Aligned_cols=216  Identities=20%  Similarity=0.248  Sum_probs=153.9

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCC-----CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      ++.|-||--.|++++.+|+++++||++..     ..|++|+..+......+..|.-.  |+.++|+|  |+++|++++.|
T Consensus       518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT--VT~l~FSp--dg~~LLsvsRD  593 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT--VTRLAFSP--DGRYLLSVSRD  593 (764)
T ss_pred             hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceE--EEEEEECC--CCcEEEEeecC
Confidence            55688999999999999999999999764     35899999988888889999855  99999999  99999999999


Q ss_pred             CeEEEEECCCCCCCCCCccccccce-EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      .++.+|.........   +.+.... .....+.                                    ..|+|++.+++
T Consensus       594 Rt~sl~~~~~~~~~e---~~fa~~k~HtRIIWd------------------------------------csW~pde~~Fa  634 (764)
T KOG1063|consen  594 RTVSLYEVQEDIKDE---FRFACLKAHTRIIWD------------------------------------CSWSPDEKYFA  634 (764)
T ss_pred             ceEEeeeeecccchh---hhhccccccceEEEE------------------------------------cccCcccceeE
Confidence            999999985443211   1111111 1111111                                    44999997744


Q ss_pred             EEecCCcCeEEEEeCCCc--ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCc-eEEEeecCCCcEEEEEccCC
Q 022870          165 AVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~-~~l~~g~~dg~i~vwd~~~~  241 (291)
                        ++++|++|++|.....  +.+..+..          .+....++++. |.|.....+ ..+++|-+.|.|.+|.....
T Consensus       635 --TaSRDK~VkVW~~~~~~d~~i~~~a~----------~~~~~aVTAv~-~~~~~~~e~~~~vavGle~GeI~l~~~~~~  701 (764)
T KOG1063|consen  635 --TASRDKKVKVWEEPDLRDKYISRFAC----------LKFSLAVTAVA-YLPVDHNEKGDVVAVGLEKGEIVLWRRKRE  701 (764)
T ss_pred             --EecCCceEEEEeccCchhhhhhhhch----------hccCCceeeEE-eeccccccccceEEEEecccEEEEEecccc
Confidence              8899999999998877  33333211          11244566665 666422111 17899999999999996510


Q ss_pred             CC-----------ceeeccccccceeEEEeecC----------CCeeEEecCCCeEEEEEcC
Q 022870          242 GI-----------PLTAMKVHLEPVLCLSIDES----------CNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       242 ~~-----------~~~~~~~h~~~v~~~~~~~~----------~~~l~s~s~dg~i~vw~~~  282 (291)
                      .+           .+....+|...|+.+.|.|.          ...|++|+.|..+|++++.
T Consensus       702 ~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  702 HRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             cccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            11           11122356778999999754          3346999999999999875

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=3.7e-18  Score=129.24  Aligned_cols=255  Identities=17%  Similarity=0.221  Sum_probs=152.2

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCC--------C--------CeEEEEEeeecCCcceEEEEEeec
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--------Q--------HRTVSSSWVHSAAHGIVSVATGPS   73 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~~~v~~~~~~~~   73 (291)
                      .+..|..|...|+++.|+|+|.+||+|+.+|.|.+|-..        +        ....+.+.+|...  |..++|+| 
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d--iydL~Ws~-  133 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDD--IYDLAWSP-  133 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccc--hhhhhccC-
Confidence            356788999999999999999999999999999999765        2        1234556677755  99999999 


Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeec---------c-----
Q 022870           74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYER---------E-----  139 (291)
Q Consensus        74 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-----  139 (291)
                       ++.++++++.|.++++||+..+....  ....+.+......+.+..........+- ....+.+         .     
T Consensus       134 -d~~~l~s~s~dns~~l~Dv~~G~l~~--~~~dh~~yvqgvawDpl~qyv~s~s~dr-~~~~~~~~~~~~~~~~~~~~m~  209 (434)
T KOG1009|consen  134 -DSNFLVSGSVDNSVRLWDVHAGQLLA--ILDDHEHYVQGVAWDPLNQYVASKSSDR-HPEGFSAKLKQVIKRHGLDIMP  209 (434)
T ss_pred             -CCceeeeeeccceEEEEEeccceeEe--eccccccccceeecchhhhhhhhhccCc-ccceeeeeeeeeeeeeeeeEee
Confidence             99999999999999999999987654  3333333333333333222211111111 0000000         0     


Q ss_pred             ----cCccccccCCCCCC--------cccCCCCCcEEEEecCC--cCe-----EEEEeCCC-cceeeEecccccCCCCCC
Q 022870          140 ----VGETVDTDSLCDSK--------DDVPAEGPKYMAVAGEQ--LSE-----VEIWDLNT-AERCTRLHQNSCGGSPNF  199 (291)
Q Consensus       140 ----~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~--d~~-----i~~wd~~~-~~~~~~~~~~~~~~~~~~  199 (291)
                          ...........|..        ++|+|+|..++.-+|..  .+.     .++|+-.. .++...++          
T Consensus       210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp----------  279 (434)
T KOG1009|consen  210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP----------  279 (434)
T ss_pred             ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC----------
Confidence                00000000011111        88999997655322211  111     22332211 11122222          


Q ss_pred             CCCcceeeeeEEEecCC-------CCC-------CceEEEeecCCCcEEEEEccCCCCceeecc-ccccceeEEEeecCC
Q 022870          200 SSKGRGMCMAVQAYLPS-------KSQ-------GFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESC  264 (291)
Q Consensus       200 ~~~~~~~~~~~~~~~p~-------~~~-------g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~  264 (291)
                        ........+. |+|-       ...       -+..++.++. ..|+|||.++ -.|+.... -|-..|+.++|+++|
T Consensus       280 --~~~k~~lavr-~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~-~~P~~~v~nihy~~iTDiaws~dg  354 (434)
T KOG1009|consen  280 --SPKKPALAVR-FSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQT-LEPLAVVDNIHYSAITDIAWSDDG  354 (434)
T ss_pred             --CCCcceEEEE-eeeeEEEeccccccccccccccceEEEEeec-ceEEEecccc-ccceEEEeeeeeeeecceeecCCC
Confidence              1122223332 3331       110       1114555554 5799999998 66666544 588899999999999


Q ss_pred             CeeEEecCCCeEEEEEcCCCce
Q 022870          265 NGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       265 ~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      .+|+..|.||...+-.++..++
T Consensus       355 ~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  355 SVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             cEEEEeccCCceEEEEEcchhc
Confidence            9999999999888777766543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=4.6e-19  Score=131.33  Aligned_cols=131  Identities=14%  Similarity=0.210  Sum_probs=94.5

Q ss_pred             CCceEEecCCccceeEEEEcC--CCCEEEEecCCCeEEEEeCCCCeEEEEEe--eecCCcceEEEEEeecCCCCeEEEEe
Q 022870            8 PDPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTVSSSW--VHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      .+.+..+++|...++.++|..  .+..+.+|+.||+|++||++.......+.  .+.+ .+..+++.+-  .++.+++|.
T Consensus        60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~-~~f~~ld~nc--k~~ii~~Gt  136 (376)
T KOG1188|consen   60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG-TPFICLDLNC--KKNIIACGT  136 (376)
T ss_pred             hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC-CcceEeeccC--cCCeEEecc
Confidence            457788999999999999987  46689999999999999998765544443  3332 4578888876  557777775


Q ss_pred             C----CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCC
Q 022870           84 R----DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE  159 (291)
Q Consensus        84 ~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (291)
                      .    |-.|.+||++..+........-+......                                        +.|+|.
T Consensus       137 E~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~----------------------------------------lrFHP~  176 (376)
T KOG1188|consen  137 ELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ----------------------------------------LRFHPS  176 (376)
T ss_pred             ccccCceEEEEEEeccccchhhhhhhhccCccee----------------------------------------EEecCC
Confidence            4    66899999998765211111111111111                                        669999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCc
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTA  182 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~  182 (291)
                      .+++++ +|+.||.|.+||+...
T Consensus       177 ~pnlLl-SGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  177 DPNLLL-SGSVDGLVNLFDTKKD  198 (376)
T ss_pred             CCCeEE-eecccceEEeeecCCC
Confidence            999887 7899999999999753

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.6e-18  Score=127.60  Aligned_cols=204  Identities=12%  Similarity=0.180  Sum_probs=146.4

Q ss_pred             cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        15 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~   94 (291)
                      +-|.-.|..+-....+.+|++++.|..|.+|++. |+.+..+......  -+..+.+|  +|+++++++.---|++|.+-
T Consensus       184 ~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~--n~~aavSP--~GRFia~~gFTpDVkVwE~~  258 (420)
T KOG2096|consen  184 RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS--NYDAAVSP--DGRFIAVSGFTPDVKVWEPI  258 (420)
T ss_pred             hhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc--ccceeeCC--CCcEEEEecCCCCceEEEEE
Confidence            3477788888888889999999999999999987 9999888776644  78889999  99999999999999999874


Q ss_pred             CCC---CCC-CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEE
Q 022870           95 NGG---LSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV  166 (291)
Q Consensus        95 ~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  166 (291)
                      -.+   ... ..++.                                          +.+|+.    ++|+++..+++  
T Consensus       259 f~kdG~fqev~rvf~------------------------------------------LkGH~saV~~~aFsn~S~r~v--  294 (420)
T KOG2096|consen  259 FTKDGTFQEVKRVFS------------------------------------------LKGHQSAVLAAAFSNSSTRAV--  294 (420)
T ss_pred             eccCcchhhhhhhhe------------------------------------------eccchhheeeeeeCCCcceeE--
Confidence            322   110 01122                                          223333    67999988776  


Q ss_pred             ecCCcCeEEEEeCCC----cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          167 AGEQLSEVEIWDLNT----AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                      +.+.||++++||+.-    ++....++.-.     .......+....+. .+|+   |+ .|+ .+....|++|..++ +
T Consensus       295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~-----~pl~aag~~p~RL~-lsP~---g~-~lA-~s~gs~l~~~~se~-g  362 (420)
T KOG2096|consen  295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGS-----APLHAAGSEPVRLE-LSPS---GD-SLA-VSFGSDLKVFASED-G  362 (420)
T ss_pred             EEecCCcEEEeeccceEecCCCchHhhcCC-----cchhhcCCCceEEE-eCCC---Cc-EEE-eecCCceEEEEccc-C
Confidence            677899999999863    22222222100     11111223344666 9998   54 444 44556799999998 6


Q ss_pred             Cceeec-cccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          243 IPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       243 ~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      +....+ +.|...|.+|+|+++|+++++++ |..+++..
T Consensus       363 ~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  363 KDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             ccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            655554 47999999999999999999997 77788875

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=5e-19  Score=139.05  Aligned_cols=232  Identities=15%  Similarity=0.163  Sum_probs=150.2

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe-eecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ..+.|.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..++++.+. +|.  ..|.++.|.|..+..++++|..|..|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt--aNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT--ANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc--cceeEEeeeccCCCeEEEeccCcceE
Confidence            356789999999999999999999999999999999998888888775 466  45999999997666788999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (291)
                      +++|+...+--.    .-+.......                                ....|..    ++..|.+++.+
T Consensus       120 ~lfdl~~~~~~~----~d~~~~~~~~--------------------------------~~~cht~rVKria~~p~~Phtf  163 (758)
T KOG1310|consen  120 KLFDLDSSKEGG----MDHGMEETTR--------------------------------CWSCHTDRVKRIATAPNGPHTF  163 (758)
T ss_pred             EEEecccccccc----cccCccchhh--------------------------------hhhhhhhhhhheecCCCCCceE
Confidence            999998543211    0000000000                                0011111    66778887777


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCC-CCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      - ++++||+++-||++.......-.. +..... -+.  ..-...++. .+|..+   ++|++|+.|-..++||.+...+
T Consensus       164 w-sasEDGtirQyDiREph~c~p~~~-~~~~l~ny~~--~lielk~lt-isp~rp---~~laVGgsdpfarLYD~Rr~lk  235 (758)
T KOG1310|consen  164 W-SASEDGTIRQYDIREPHVCNPDED-CPSILVNYNP--QLIELKCLT-ISPSRP---YYLAVGGSDPFARLYDRRRVLK  235 (758)
T ss_pred             E-EecCCcceeeecccCCccCCcccc-ccHHHHHhch--hhheeeeee-ecCCCC---ceEEecCCCchhhhhhhhhhcc
Confidence            6 466799999999997432111000 000000 010  112234454 788743   3999999999999999542111


Q ss_pred             -----------------ceeec-cccc--------c---ceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          244 -----------------PLTAM-KVHL--------E---PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       244 -----------------~~~~~-~~h~--------~---~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                                       ++.-+ .+|.        .   .++-+.|+|+|.-|...=..-.|+++|++.++-.
T Consensus       236 s~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  236 SFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             CCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence                             11111 1222        1   2455677999876644433447999999877643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=4e-18  Score=120.99  Aligned_cols=211  Identities=18%  Similarity=0.236  Sum_probs=142.1

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCC---------C-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQ---------H-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~---------~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ..|.+-+++|.+++|+.|..+|+|.+..+++         + ..+...+.|..  +|+.++|..    ..|++|+. |.|
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg--piy~~~f~d----~~Lls~gd-G~V   83 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG--PIYYLAFHD----DFLLSGGD-GLV   83 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC--Ceeeeeeeh----hheeeccC-ceE
Confidence            4577778999999999999999999998764         1 23344567774  499999986    67777775 999


Q ss_pred             EEEECCCCCCCC--CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870           89 KCWDIENGGLSS--NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (291)
Q Consensus        89 ~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (291)
                      +=|..+......  ++........ ...                              ....+.-..+.+.|..+.++. 
T Consensus        84 ~gw~W~E~~es~~~K~lwe~~~P~-~~~------------------------------~~evPeINam~ldP~enSi~~-  131 (325)
T KOG0649|consen   84 YGWEWNEEEESLATKRLWEVKIPM-QVD------------------------------AVEVPEINAMWLDPSENSILF-  131 (325)
T ss_pred             EEeeehhhhhhccchhhhhhcCcc-ccC------------------------------cccCCccceeEeccCCCcEEE-
Confidence            999887543210  1111111100 000                              000000000446677777765 


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +| .|+.++.||+++++..+.++        ||.+    ++.++. -...  ++  .+++|++||++|+||.++ ++.+.
T Consensus       132 Ag-GD~~~y~~dlE~G~i~r~~r--------GHtD----YvH~vv-~R~~--~~--qilsG~EDGtvRvWd~kt-~k~v~  192 (325)
T KOG0649|consen  132 AG-GDGVIYQVDLEDGRIQREYR--------GHTD----YVHSVV-GRNA--NG--QILSGAEDGTVRVWDTKT-QKHVS  192 (325)
T ss_pred             ec-CCeEEEEEEecCCEEEEEEc--------CCcc----eeeeee-eccc--Cc--ceeecCCCccEEEEeccc-cceeE
Confidence            34 38999999999999999999        8855    555554 3222  13  699999999999999999 77766


Q ss_pred             ecc---------ccc-cceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          247 AMK---------VHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       247 ~~~---------~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      .+.         .|. .+|-+++.+.+  +|++|+. ..+.+|++++.+...++
T Consensus       193 ~ie~yk~~~~lRp~~g~wigala~~ed--WlvCGgG-p~lslwhLrsse~t~vf  243 (325)
T KOG0649|consen  193 MIEPYKNPNLLRPDWGKWIGALAVNED--WLVCGGG-PKLSLWHLRSSESTCVF  243 (325)
T ss_pred             EeccccChhhcCcccCceeEEEeccCc--eEEecCC-CceeEEeccCCCceEEE
Confidence            543         222 35666766666  8888874 46999999988776553

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=2.1e-18  Score=138.79  Aligned_cols=238  Identities=16%  Similarity=0.181  Sum_probs=158.4

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~   99 (291)
                      .|+.++|-|||..|+.+.. ..+.+||.++|..+.++++|+..  |.+++|+.  +|.++++|+.|+.|.+|+-.-....
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDt--VycVAys~--dGkrFASG~aDK~VI~W~~klEG~L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDT--VYCVAYAK--DGKRFASGSADKSVIIWTSKLEGIL   88 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccce--EEEEEEcc--CCceeccCCCceeEEEeccccccee
Confidence            7999999999998877654 47999999999999999999955  99999999  9999999999999999987644322


Q ss_pred             CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-cccCCCCCcEEEEecCCcCeEEEEe
Q 022870          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWD  178 (291)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~~wd  178 (291)
                      .    --+.....+..+.+......  ...-.....|...............-- .+|..||.+++  -|-.||+|.+-+
T Consensus        89 k----YSH~D~IQCMsFNP~~h~La--sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqyla--lG~~nGTIsiRN  160 (1081)
T KOG1538|consen   89 K----YSHNDAIQCMSFNPITHQLA--SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLA--LGMFNGTISIRN  160 (1081)
T ss_pred             e----eccCCeeeEeecCchHHHhh--hcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEE--EeccCceEEeec
Confidence            1    11222233333332221111  111111222222222221111111111 67889997766  477789998886


Q ss_pred             CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC------------------------------------------
Q 022870          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS------------------------------------------  216 (291)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------------------------------------  216 (291)
                      -.. +....+..         +...+.++++++ |+|.                                          
T Consensus       161 k~g-Eek~~I~R---------pgg~Nspiwsi~-~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~Cis  229 (1081)
T KOG1538|consen  161 KNG-EEKVKIER---------PGGSNSPIWSIC-WNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCIS  229 (1081)
T ss_pred             CCC-CcceEEeC---------CCCCCCCceEEE-ecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhe
Confidence            543 33223321         111233444444 4443                                          


Q ss_pred             -CCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          217 -KSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       217 -~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                       -.+|+ +++.|+.|+.+.+|-.+  +..+.++.....+|++++..|++++++.|+.||+|.-|++-..
T Consensus       230 Yf~NGE-y~LiGGsdk~L~~fTR~--GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  230 YFTNGE-YILLGGSDKQLSLFTRD--GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             eccCCc-EEEEccCCCceEEEeec--CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence             12355 88888889999998755  6777777777889999999999999999999999999987544

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=4e-18  Score=123.96  Aligned_cols=202  Identities=18%  Similarity=0.215  Sum_probs=146.2

Q ss_pred             CCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCe---EEEEEeeecCCcceEEEEEeecCCC-CeEEEEeCCCeEEE
Q 022870           16 GHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKC   90 (291)
Q Consensus        16 ~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~i   90 (291)
                      .+.+++++..|+. +.+++.+.+-|.++.|||++++.   ....+-.|..+  |..++|..  ++ +.|++.+.||+||+
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE--V~DIaf~~--~s~~~FASvgaDGSvRm  223 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE--VYDIAFLK--GSRDVFASVGADGSVRM  223 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc--eeEEEecc--CccceEEEecCCCcEEE
Confidence            3678999999998 88899999999999999999863   34556778855  99999998  44 57889999999999


Q ss_pred             EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC
Q 022870           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (291)
                      +|++..+... .+++-........                                      .++|++...+++|+-+..
T Consensus       224 FDLR~leHST-IIYE~p~~~~pLl--------------------------------------RLswnkqDpnymATf~~d  264 (364)
T KOG0290|consen  224 FDLRSLEHST-IIYEDPSPSTPLL--------------------------------------RLSWNKQDPNYMATFAMD  264 (364)
T ss_pred             EEecccccce-EEecCCCCCCcce--------------------------------------eeccCcCCchHHhhhhcC
Confidence            9999765321 0111110000000                                      067888888888877776


Q ss_pred             cCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC-----c
Q 022870          171 LSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----P  244 (291)
Q Consensus       171 d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----~  244 (291)
                      ...|.+.|+|... ++..++        +|.    +.+.+++ |.|...  . .|++++.|..+.+||+.+..+     +
T Consensus       265 S~~V~iLDiR~P~tpva~L~--------~H~----a~VNgIa-WaPhS~--~-hictaGDD~qaliWDl~q~~~~~~~dP  328 (364)
T KOG0290|consen  265 SNKVVILDIRVPCTPVARLR--------NHQ----ASVNGIA-WAPHSS--S-HICTAGDDCQALIWDLQQMPRENGEDP  328 (364)
T ss_pred             CceEEEEEecCCCcceehhh--------cCc----ccccceE-ecCCCC--c-eeeecCCcceEEEEecccccccCCCCc
Confidence            7889999999754 556666        674    4556665 999843  2 899999999999999986443     3


Q ss_pred             eeeccccccceeEEEee-cCCCeeEEecCCCeEEE
Q 022870          245 LTAMKVHLEPVLCLSID-ESCNGGISGGADQKIVL  278 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~-~~~~~l~s~s~dg~i~v  278 (291)
                      +..+. -.+.|+.+.|+ ....+++.+. ++++.+
T Consensus       329 ilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  329 ILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             hhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            44444 36789999996 4555777665 444444

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.81  E-value=3.7e-18  Score=136.22  Aligned_cols=253  Identities=17%  Similarity=0.231  Sum_probs=157.9

Q ss_pred             EEEEcC---CCCEEEEecCCCeEEEEeCCCCeE------EEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870           23 DVCFHQ---TKPILFAGTTGGELRIWDTVQHRT------VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (291)
Q Consensus        23 ~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~   93 (291)
                      +..|++   ....||.+..||.|.++|....+.      +.....|...  |..+.|.|  ...+|++++.|.++++||+
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nA--ifDl~wap--ge~~lVsasGDsT~r~Wdv  129 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNA--IFDLKWAP--GESLLVSASGDSTIRPWDV  129 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccce--eEeeccCC--CceeEEEccCCceeeeeee
Confidence            366765   456899999999999999765322      3455678866  99999999  7789999999999999999


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc-------------------ccccCC-----
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET-------------------VDTDSL-----  149 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~-----  149 (291)
                      ++.++....++..+........+.+............+...+|+++-...                   ....+.     
T Consensus       130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k  209 (720)
T KOG0321|consen  130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK  209 (720)
T ss_pred             ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence            99887664334444444444444444333334444455566666543220                   000000     


Q ss_pred             --CCCC-------cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCC
Q 022870          150 --CDSK-------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (291)
Q Consensus       150 --~~~~-------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  220 (291)
                        .+..       +.+..|. ..++++|..|+.|++||++..................|.....+. ++   +.-|.. |
T Consensus       210 ~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~-~n---L~lDss-G  283 (720)
T KOG0321|consen  210 WKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ-VN---LILDSS-G  283 (720)
T ss_pred             cccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee-EE---EEecCC-C
Confidence              0000       2222344 456667777999999999987765544422211222232222222 22   333322 5


Q ss_pred             ceEEEeecCCCcEEEEEccCCC-Cceeecccccccee--EEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          221 FVNVLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVL--CLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~--~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      . +|++.+.|+.|++||+.... .++..+.++...-.  .-..+|++.+|++|+.|...++|.+.+...
T Consensus       284 t-~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  284 T-YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA  351 (720)
T ss_pred             C-eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence            5 66666679999999998633 35555655432111  113389999999999999999999987654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.80  E-value=3.1e-18  Score=137.02  Aligned_cols=114  Identities=13%  Similarity=0.181  Sum_probs=94.6

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcce-------eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (291)
                      +.|+|....-+++++ .||.|++|.+..+..       ...+.        +|    ...++++. |+|-..+   .|++
T Consensus       633 l~WdPFD~~rLAVa~-ddg~i~lWr~~a~gl~e~~~tPe~~lt--------~h----~eKI~slR-fHPLAad---vLa~  695 (1012)
T KOG1445|consen  633 LHWDPFDDERLAVAT-DDGQINLWRLTANGLPENEMTPEKILT--------IH----GEKITSLR-FHPLAAD---VLAV  695 (1012)
T ss_pred             cccCCCChHHeeecc-cCceEEEEEeccCCCCcccCCcceeee--------cc----cceEEEEE-ecchhhh---Hhhh
Confidence            788888877777554 599999999876532       22233        44    44677787 9997442   8999


Q ss_pred             ecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       227 g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      ++.|-+|++||+++ .+....+.+|.+.|.+++|+|+|+.+|+.+.||+|+||+.+++.
T Consensus       696 asyd~Ti~lWDl~~-~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  696 ASYDSTIELWDLAN-AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             hhccceeeeeehhh-hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence            99999999999999 88888999999999999999999999999999999999988754

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.4e-17  Score=124.02  Aligned_cols=255  Identities=13%  Similarity=0.207  Sum_probs=175.3

Q ss_pred             CceEEec-CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            9 DPVAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         9 ~~~~~l~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      +|+.... .|...|.|++|.....++++|+.+++|.+.|+++.+.+..+........|+.+..+|  -.+.|++.+.+|.
T Consensus        95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P--~DN~~~~~t~~~~  172 (609)
T KOG4227|consen   95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP--TDNTLIVVTRAKL  172 (609)
T ss_pred             CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC--CCceEEEEecCce
Confidence            5566555 366999999999988999999999999999999998888775444334699999999  5689999999999


Q ss_pred             EEEEECCCCCCCCCCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccCcccccc------CCCCC-C---ccc
Q 022870           88 VKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD------SLCDS-K---DDV  156 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~---~~~  156 (291)
                      |.+||.+...-...+...... ...+...|.+..-.........+...+|+.+........      ++... .   ..|
T Consensus       173 V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~  252 (609)
T KOG4227|consen  173 VSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLW  252 (609)
T ss_pred             EEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheee
Confidence            999999876532222222222 233444555554444455555566677777655432211      11111 1   779


Q ss_pred             CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcce---eeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRG---MCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                      +|.|..+++.  -....-.+||+-+.++.. ++.       .|......   .+-+++ |.-+     +.+++|+.+-.|
T Consensus       253 ~~~G~Q~msi--RR~~~P~~~D~~S~R~~V-~k~-------D~N~~GY~N~~T~KS~~-F~~D-----~~v~tGSD~~~i  316 (609)
T KOG4227|consen  253 SPSGNQFMSI--RRGKCPLYFDFISQRCFV-LKS-------DHNPNGYCNIKTIKSMT-FIDD-----YTVATGSDHWGI  316 (609)
T ss_pred             CCCCCeehhh--hccCCCEEeeeeccccee-Eec-------cCCCCcceeeeeeeeee-eecc-----eeeeccCcccce
Confidence            9999988743  233445678888755432 222       23221111   122333 6633     269999999999


Q ss_pred             EEEEccCC----C------------------CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          234 LVWDIRNP----G------------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       234 ~vwd~~~~----~------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      ++|.+...    +                  ..+..+++|...++.+.|+|...+|++.+..+.+++|.-
T Consensus       317 ~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  317 HIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             EEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence            99987521    1                  124568899999999999999999999999999999964

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=2.2e-18  Score=135.52  Aligned_cols=216  Identities=15%  Similarity=0.196  Sum_probs=142.3

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC------C----eEEEEEeeecCCcceEEEEEeecCCCCe
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------H----RTVSSSWVHSAAHGIVSVATGPSIGLNK   78 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~------~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~   78 (291)
                      +++.+|++|.++|.|++..+++..+++|+.||+|+.|++..      .    .....+.+|...  |+.+++++  ...+
T Consensus       335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda--vw~l~~s~--~~~~  410 (577)
T KOG0642|consen  335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA--VWLLALSS--TKDR  410 (577)
T ss_pred             eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc--eeeeeecc--cccc
Confidence            67899999999999999999999999999999999996542      1    234567788866  99999999  6678


Q ss_pred             EEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcccc------c-cCCCC
Q 022870           79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD------T-DSLCD  151 (291)
Q Consensus        79 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~  151 (291)
                      |++++.||++++|+.......   .+...........+.......... ........+.+.......      . ...+.
T Consensus       411 Llscs~DgTvr~w~~~~~~~~---~f~~~~e~g~Plsvd~~ss~~a~~-~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~  486 (577)
T KOG0642|consen  411 LLSCSSDGTVRLWEPTEESPC---TFGEPKEHGYPLSVDRTSSRPAHS-LASFRFGYTSIDDMEVVSDLLIFESSASPGP  486 (577)
T ss_pred             eeeecCCceEEeeccCCcCcc---ccCCccccCCcceEeeccchhHhh-hhhcccccccchhhhhhhheeeccccCCCcc
Confidence            999999999999998765431   122221111111111111110000 011111111111111000      0 00000


Q ss_pred             -----CC-cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEE
Q 022870          152 -----SK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (291)
Q Consensus       152 -----~~-~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (291)
                           .. +..+|.+...+  ++..|+.|+++|..+++.+....        .|    ...+.+++ +.|++.    +|+
T Consensus       487 ~~~~~in~vVs~~~~~~~~--~~hed~~Ir~~dn~~~~~l~s~~--------a~----~~svtsla-i~~ng~----~l~  547 (577)
T KOG0642|consen  487 RRYPQINKVVSHPTADITF--TAHEDRSIRFFDNKTGKILHSMV--------AH----KDSVTSLA-IDPNGP----YLM  547 (577)
T ss_pred             cccCccceEEecCCCCeeE--ecccCCceecccccccccchhee--------ec----cceeccee-ecCCCc----eEE
Confidence                 01 66777776544  67789999999999999988877        55    34566665 999854    999


Q ss_pred             eecCCCcEEEEEccCCCCceeeccccc
Q 022870          226 AGYEDGSILVWDIRNPGIPLTAMKVHL  252 (291)
Q Consensus       226 ~g~~dg~i~vwd~~~~~~~~~~~~~h~  252 (291)
                      +|+.||.+++|.+.. ..++.....|.
T Consensus       548 s~s~d~sv~l~kld~-k~~~~es~~~r  573 (577)
T KOG0642|consen  548 SGSHDGSVRLWKLDV-KTCVLESTAHR  573 (577)
T ss_pred             eecCCceeehhhccc-hheeecccccc
Confidence            999999999999986 56666555554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=8.9e-19  Score=129.27  Aligned_cols=215  Identities=18%  Similarity=0.250  Sum_probs=148.7

Q ss_pred             CccceeEEEEcCC----CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        17 h~~~v~~l~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      |....+.++|+-+    ..++|.|+.-|.|+|.|+.++++...+.+|...  |..+.+.|. +.++++++|.|.+|++||
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~s--INeik~~p~-~~qlvls~SkD~svRlwn  164 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGS--INEIKFHPD-RPQLVLSASKDHSVRLWN  164 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCcc--chhhhcCCC-CCcEEEEecCCceEEEEe
Confidence            7788888888752    458899999999999999999999999999976  999999994 336899999999999999


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEec
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG  168 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g  168 (291)
                      +++..++.    .+..                                       ..+|.+    +.|+++|.+++  ++
T Consensus       165 I~~~~Cv~----VfGG---------------------------------------~egHrdeVLSvD~~~~gd~i~--Sc  199 (385)
T KOG1034|consen  165 IQTDVCVA----VFGG---------------------------------------VEGHRDEVLSVDFSLDGDRIA--SC  199 (385)
T ss_pred             ccCCeEEE----Eecc---------------------------------------cccccCcEEEEEEcCCCCeee--cc
Confidence            99987643    1111                                       112222    56999998654  66


Q ss_pred             CCcCeEEEEeCCCcceeeEeccc-------cc---C------CCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQN-------SC---G------GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~-------~~---~------~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (291)
                      +.|.++++|++...+....++..       ..   +      +...-...++.++-++. |-     |. ++++-+-++.
T Consensus       200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr-w~-----gd-~ilSkscena  272 (385)
T KOG1034|consen  200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR-WF-----GD-FILSKSCENA  272 (385)
T ss_pred             CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH-HH-----hh-heeecccCce
Confidence            67999999999854322211110       00   0      00001111233444444 54     33 8899899999


Q ss_pred             EEEEEccCCCC-------------ceeeccccccceeEEEe--ecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          233 ILVWDIRNPGI-------------PLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       233 i~vwd~~~~~~-------------~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      |..|..-...+             .+..+......|+-+.|  ++-+++||.|...|.|.+||++....
T Consensus       273 I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  273 IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence            99998721121             22334444455666655  88899999999999999999987543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=6.6e-16  Score=122.95  Aligned_cols=256  Identities=14%  Similarity=0.125  Sum_probs=152.3

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEe-cCCCeEEEEeCCC-CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CC
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG   86 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg   86 (291)
                      .+.++. +.+....++++|++++|+++ ..++.|.+|++.. ++.. .............++++|  ++++|++++. ++
T Consensus        27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~~~~~~~~p~~i~~~~--~g~~l~v~~~~~~  102 (330)
T PRK11028         27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-FAAESPLPGSPTHISTDH--QGRFLFSASYNAN  102 (330)
T ss_pred             eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-EeeeecCCCCceEEEECC--CCCEEEEEEcCCC
Confidence            445554 34567889999999988765 4588899999863 3321 111111112367899999  9888887764 88


Q ss_pred             eEEEEECCCCCCCCCCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccCccccc------cC-CCCCC--ccc
Q 022870           87 TVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT------DS-LCDSK--DDV  156 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~--~~~  156 (291)
                      .|.+|++++.....+....... ...+...+.+..............+.+|++........      .. .+...  ++|
T Consensus       103 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~  182 (330)
T PRK11028        103 CVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF  182 (330)
T ss_pred             eEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence            9999999754322211211111 12233334444333333444556677788765332210      11 12111  899


Q ss_pred             CCCCCcEEEEecCCcCeEEEEeCCC--cc--eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCC
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDLNT--AE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG  231 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg  231 (291)
                      +|++++++++ ...++.|.+||+..  ++  .+..+..  .+   .. .........+. |+|+   |+ +++++. .++
T Consensus       183 ~pdg~~lyv~-~~~~~~v~v~~~~~~~~~~~~~~~~~~--~p---~~-~~~~~~~~~i~-~~pd---g~-~lyv~~~~~~  250 (330)
T PRK11028        183 HPNQQYAYCV-NELNSSVDVWQLKDPHGEIECVQTLDM--MP---AD-FSDTRWAADIH-ITPD---GR-HLYACDRTAS  250 (330)
T ss_pred             CCCCCEEEEE-ecCCCEEEEEEEeCCCCCEEEEEEEec--CC---Cc-CCCCccceeEE-ECCC---CC-EEEEecCCCC
Confidence            9999877764 44479999999973  22  2333321  00   00 00112233465 9998   55 666664 578


Q ss_pred             cEEEEEccCCCCceeecccc---ccceeEEEeecCCCeeEEecC-CCeEEEEEcC
Q 022870          232 SILVWDIRNPGIPLTAMKVH---LEPVLCLSIDESCNGGISGGA-DQKIVLYNLD  282 (291)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~-dg~i~vw~~~  282 (291)
                      .|.+|++...+.. ..+.++   ......+.++|+|++|+++.. +++|.+|+++
T Consensus       251 ~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        251 LISVFSVSEDGSV-LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eEEEEEEeCCCCe-EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            9999999753322 222222   124568999999999987765 8999999885

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=6.4e-18  Score=127.67  Aligned_cols=166  Identities=19%  Similarity=0.234  Sum_probs=126.8

Q ss_pred             EeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCcee
Q 022870           56 SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC  135 (291)
Q Consensus        56 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (291)
                      +.+|..  +|..++|+|.+| ..+++||+|.+|.||++-.+.+.......                              
T Consensus        77 v~GHt~--~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~ltep------------------------------  123 (472)
T KOG0303|consen   77 VCGHTA--PVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLTEP------------------------------  123 (472)
T ss_pred             ccCccc--cccccccCccCC-ceeecCCCCceEEEEECCCcccccCcccc------------------------------
Confidence            457774  499999999844 89999999999999999876553311100                              


Q ss_pred             eecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEE
Q 022870          136 YEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ  211 (291)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (291)
                               ...+.+|+.    ++|+|...++++++|+ |..|.+||+.+++.+.++.         |    ..+++++.
T Consensus       124 ---------vv~L~gH~rrVg~V~wHPtA~NVLlsag~-Dn~v~iWnv~tgeali~l~---------h----pd~i~S~s  180 (472)
T KOG0303|consen  124 ---------VVELYGHQRRVGLVQWHPTAPNVLLSAGS-DNTVSIWNVGTGEALITLD---------H----PDMVYSMS  180 (472)
T ss_pred             ---------eEEEeecceeEEEEeecccchhhHhhccC-CceEEEEeccCCceeeecC---------C----CCeEEEEE
Confidence                     011223333    7799999999887666 8999999999999887775         3    56899998


Q ss_pred             EecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc-ceeEEEeecCCCeeEEec---CCCeEEEEEcCC
Q 022870          212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PVLCLSIDESCNGGISGG---ADQKIVLYNLDH  283 (291)
Q Consensus       212 ~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s---~dg~i~vw~~~~  283 (291)
                       |+-+++    +|++.+.|.+|||||.++ ++.+..-.+|.+ .-..+.|-.++..+-||-   .+.++-+||...
T Consensus       181 -fn~dGs----~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  181 -FNRDGS----LLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             -eccCCc----eeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence             999854    999999999999999999 888888888876 345567777887444442   367899998654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4.8e-17  Score=125.28  Aligned_cols=197  Identities=16%  Similarity=0.195  Sum_probs=142.5

Q ss_pred             cceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc
Q 022870           63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE  142 (291)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (291)
                      .+|+++.|+|  ....|++++.|++++||.+....-..-....+...+...+.+.+.+...........-...|++...+
T Consensus       214 ~~I~sv~FHp--~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  214 GGITSVQFHP--TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CCceEEEecC--CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            6799999999  77899999999999999987654322113334445555555555444333333333445556766555


Q ss_pred             cccc-cCCCCCC-----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC
Q 022870          143 TVDT-DSLCDSK-----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS  216 (291)
Q Consensus       143 ~~~~-~~~~~~~-----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  216 (291)
                      .... ...++..     ...+++++.++ ..| ..|.|.+....+++.+..++             ..+.+..+. |+.+
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia-~~G-~~G~I~lLhakT~eli~s~K-------------ieG~v~~~~-fsSd  355 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIA-IAG-NNGHIHLLHAKTKELITSFK-------------IEGVVSDFT-FSSD  355 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEE-Ecc-cCceEEeehhhhhhhhheee-------------eccEEeeEE-EecC
Confidence            3322 3333332     77899997544 355 47999999999999998888             467788887 9966


Q ss_pred             CCCCceEEEeecCCCcEEEEEccCCCCceeeccccccce--eEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          217 KSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV--LCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       217 ~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                         ++ .|++.+.+|.|++||+++ ..+++.+.. .+.|  ++++.++++.+||+||..|.|.|||.++
T Consensus       356 ---sk-~l~~~~~~GeV~v~nl~~-~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  356 ---SK-ELLASGGTGEVYVWNLRQ-NSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             ---Cc-EEEEEcCCceEEEEecCC-cceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence               55 788888899999999998 678887775 3444  5667789999999999999999999764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4.1e-18  Score=131.94  Aligned_cols=264  Identities=17%  Similarity=0.192  Sum_probs=171.5

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe-eecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ....|.+|.+.|..+.|+..|..|++|+.|..|.+||...++....+. +|.  ..|..-.|.|..+...+++++.||.+
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~--~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHC--NNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccc--cchhhhhccCCCCCcCceeccccCce
Confidence            456788999999999999999999999999999999999888777765 455  44888889997677899999999999


Q ss_pred             EEEECCCCCCCCCCc-cccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCC--CC-C---C---cccCC
Q 022870           89 KCWDIENGGLSSNPS-LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL--CD-S---K---DDVPA  158 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~---~~~~~  158 (291)
                      ++=.+.......... ..-+....+.....+............+....++++..........  .+ .   .   ++.+|
T Consensus       212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence            988776544332111 1111222222222222111111222222333344433322111110  11 1   1   78889


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCCccee------eEecccccC--------------------------------------
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNTAERC------TRLHQNSCG--------------------------------------  194 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~------~~~~~~~~~--------------------------------------  194 (291)
                      ...+.+++.| .|..+++||.+.-...      .++....+.                                      
T Consensus       292 ~nt~~faVgG-~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  292 RNTNEFAVGG-SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             CCccccccCC-hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence            9988888655 5899999998642111      111000000                                      


Q ss_pred             ---------------CCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEE
Q 022870          195 ---------------GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS  259 (291)
Q Consensus       195 ---------------~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~  259 (291)
                                     ...||....  .+-.+..|-|.   .+ |+++|+.-|.|.||+-.+ ++.++.+.+....|+||.
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~--TVKgVNFfGPr---sE-yVvSGSDCGhIFiW~K~t-~eii~~MegDr~VVNCLE  443 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSR--TVKGVNFFGPR---SE-YVVSGSDCGHIFIWDKKT-GEIIRFMEGDRHVVNCLE  443 (559)
T ss_pred             CCCCCCcchhhccchhhccccccc--ccceeeeccCc---cc-eEEecCccceEEEEecch-hHHHHHhhcccceEeccC
Confidence                           001221111  12333334444   33 899999999999999988 899999988777999999


Q ss_pred             eecCCCeeEEecCCCeEEEEEcCC
Q 022870          260 IDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       260 ~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      -+|--.+||+++-|.-|+||...+
T Consensus       444 pHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  444 PHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             CCCCCchhhccCCccceeeecCCc
Confidence            999999999999999999998743

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1e-17  Score=126.86  Aligned_cols=255  Identities=13%  Similarity=0.124  Sum_probs=165.6

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC------CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      +.+-+.+|.+.|+++.|+.++++|++|+.|..+++|+++.      .+++.. .+|.+...|.|++|..  ....+++|+
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-~~~~H~SNIF~L~F~~--~N~~~~SG~  124 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-MEHPHRSNIFSLEFDL--ENRFLYSGE  124 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee-ccCccccceEEEEEcc--CCeeEecCC
Confidence            3456789999999999999999999999999999999864      344443 3444446699999998  778999999


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccc--eEEEEEeecccCccceeccCCCCceeeecccCc-cccccCCCCCC-----cc
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDSK-----DD  155 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~  155 (291)
                      .+++|.+.|+++.+.+.  ++.....  .+......+. ............+.+|+.+... .....+.....     +.
T Consensus       125 ~~~~VI~HDiEt~qsi~--V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~  201 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIY--VANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE  201 (609)
T ss_pred             CcceeEeeecccceeee--eecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence            99999999999876533  2221111  2222222222 2233344556667778776655 22222222222     78


Q ss_pred             cCCCCCcEEEEecCCcCeEEEEeCCCccee-eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (291)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (291)
                      |+|..+.++++..+ .+-+-+||.+..+.. .....     +.+.+.... .-+++. |+|++   . .+++--....-.
T Consensus       202 F~P~~P~Li~~~~~-~~G~~~~D~R~~~~~~~~~~~-----~~~L~~~~~-~~M~~~-~~~~G---~-Q~msiRR~~~P~  269 (609)
T KOG4227|consen  202 FHPETPALILVNSE-TGGPNVFDRRMQARPVYQRSM-----FKGLPQENT-EWMGSL-WSPSG---N-QFMSIRRGKCPL  269 (609)
T ss_pred             ecCCCceeEEeccc-cCCCCceeeccccchHHhhhc-----cccCcccch-hhhhee-eCCCC---C-eehhhhccCCCE
Confidence            99999999886555 577999999876432 11110     001111111 224454 99984   4 565555555566


Q ss_pred             EEEccCCCCceeecccc------ccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          235 VWDIRNPGIPLTAMKVH------LEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       235 vwd~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      +||+-+...++..+...      ...+.+++|-.+.. +++||.+-.|++|.+..
T Consensus       270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPR  323 (609)
T ss_pred             EeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCC
Confidence            78887633444444311      23577888977655 89999999999999853

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=9.4e-17  Score=129.05  Aligned_cols=216  Identities=15%  Similarity=0.214  Sum_probs=158.8

Q ss_pred             CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      ...++...++.-.+.|++++.+|.+..++.|+.||.+..++...++....-......+.|.+++|+|  ++..+++|+.|
T Consensus        98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~--~~~~i~~Gs~D  175 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP--TGTKIAGGSID  175 (691)
T ss_pred             ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC--CccEEEecccC
Confidence            3446677777788999999999999999999999988888887776655433333335699999999  88899999999


Q ss_pred             CeEEEEECCCCCCCCCCccccccce----EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNS----YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (291)
                      |.|++||...+....  +.+.+...    ...+.++.                                    .|-.++ 
T Consensus       176 g~Iriwd~~~~~t~~--~~~~~~d~l~k~~~~iVWSv------------------------------------~~Lrd~-  216 (691)
T KOG2048|consen  176 GVIRIWDVKSGQTLH--IITMQLDRLSKREPTIVWSV------------------------------------LFLRDS-  216 (691)
T ss_pred             ceEEEEEcCCCceEE--EeeecccccccCCceEEEEE------------------------------------EEeecC-
Confidence            999999999876432  11111110    11222222                                    233343 


Q ss_pred             cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                      . ++ +|+.-|+|.+||...+..++.+.        .|    ...+.+++ -.+++.    ++++++.|+.|.-|...+.
T Consensus       217 t-I~-sgDS~G~V~FWd~~~gTLiqS~~--------~h----~adVl~La-v~~~~d----~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  217 T-IA-SGDSAGTVTFWDSIFGTLIQSHS--------CH----DADVLALA-VADNED----RVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             c-EE-EecCCceEEEEcccCcchhhhhh--------hh----hcceeEEE-EcCCCC----eEEEccCCCceEEEEecCC
Confidence            2 33 78888999999999999888877        44    44566665 666532    8999999999999988763


Q ss_pred             CC---ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          242 GI---PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       242 ~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      ..   .......|...|.+++..++  .+++|+.|..+.+-..+.
T Consensus       278 ~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  278 KSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             ccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence            33   23345578889999999888  899999999998876655

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.77  E-value=7.8e-17  Score=123.94  Aligned_cols=255  Identities=13%  Similarity=0.160  Sum_probs=169.2

Q ss_pred             CceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .-+..+..|..+|.+|.|+| +...+++.++||+|++-|++.......+........+.++.|+.  +...++.+..=|.
T Consensus       225 d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~--e~~~vl~~~~~G~  302 (498)
T KOG4328|consen  225 DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA--ESRSVLFGDNVGN  302 (498)
T ss_pred             CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC--CCccEEEeecccc
Confidence            34667888999999999999 66789999999999999998764332222222224477888888  6677777777789


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccc---cCCCCCC----cccCCCC
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT---DSLCDSK----DDVPAEG  160 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~  160 (291)
                      ..+||++++..... ...++........+.+................+|+++..+....   ....|..    ..|+|.+
T Consensus       303 f~~iD~R~~~s~~~-~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~  381 (498)
T KOG4328|consen  303 FNVIDLRTDGSEYE-NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG  381 (498)
T ss_pred             eEEEEeecCCccch-hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence            99999998865322 22333334444444444444444555556677888876654332   2333443    8899999


Q ss_pred             CcEEEEecCCcCeEEEEeCC----CcceeeEecccccCCCCCCCCCccee--eeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870          161 PKYMAVAGEQLSEVEIWDLN----TAERCTRLHQNSCGGSPNFSSKGRGM--CMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (291)
                      ..++  +.+.|..|+|||..    .-.+...+.         |.......  .... +|.|+..    ++++|..-..|-
T Consensus       382 gtl~--TT~~D~~IRv~dss~~sa~~~p~~~I~---------Hn~~t~RwlT~fKA-~W~P~~~----li~vg~~~r~ID  445 (498)
T KOG4328|consen  382 GTLL--TTCQDNEIRVFDSSCISAKDEPLGTIP---------HNNRTGRWLTPFKA-AWDPDYN----LIVVGRYPRPID  445 (498)
T ss_pred             CceE--eeccCCceEEeecccccccCCccceee---------ccCcccccccchhh-eeCCCcc----EEEEeccCccee
Confidence            8854  55569999999984    333344443         22211111  1222 3999744    899999999999


Q ss_pred             EEEccCCCCceeecccccc-ceeEE-EeecCCCeeEE-ecCCCeEEEEEcCC
Q 022870          235 VWDIRNPGIPLTAMKVHLE-PVLCL-SIDESCNGGIS-GGADQKIVLYNLDH  283 (291)
Q Consensus       235 vwd~~~~~~~~~~~~~h~~-~v~~~-~~~~~~~~l~s-~s~dg~i~vw~~~~  283 (291)
                      |+|-.. ++.+..+..... .|.++ .|+|-+..+++ ++.-|.|+||.-..
T Consensus       446 v~~~~~-~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  446 VFDGNG-GQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             EEcCCC-CEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence            999886 776777654332 45554 67998884554 45678999997554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.76  E-value=1.7e-16  Score=135.54  Aligned_cols=226  Identities=16%  Similarity=0.281  Sum_probs=153.1

Q ss_pred             CceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeeecCCcceEEEEEeecCCCCeEE
Q 022870            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (291)
                      ..+..|..|+..|..++.++ ++.+++||+.||+||+||..+-       +...++....  .++.++...+  .++.++
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~--sr~~~vt~~~--~~~~~A 1114 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG--SRVEKVTMCG--NGDQFA 1114 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC--CceEEEEecc--CCCeEE
Confidence            45778888999999999987 4589999999999999997641       1222232223  5599999999  889999


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCcc--ccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCC
Q 022870           81 SQGRDGTVKCWDIENGGLSSNPSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA  158 (291)
Q Consensus        81 s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (291)
                      .++.||.|++.+++..........  .........+..+.                                   .+|..
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m-----------------------------------~a~~~ 1159 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSM-----------------------------------HAFTA 1159 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEe-----------------------------------ecccc
Confidence            999999999999986322110000  00000000000000                                   11222


Q ss_pred             CCCc-EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870          159 EGPK-YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (291)
Q Consensus       159 ~~~~-~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (291)
                      .... .++ .+...+.|..||+++......++.          ....+.+++++ .+|.+   . .++.|+..|.+.+||
T Consensus      1160 ~~~S~~lv-y~T~~~~iv~~D~r~~~~~w~lk~----------~~~hG~vTSi~-idp~~---~-WlviGts~G~l~lWD 1223 (1431)
T KOG1240|consen 1160 IVQSHVLV-YATDLSRIVSWDTRMRHDAWRLKN----------QLRHGLVTSIV-IDPWC---N-WLVIGTSRGQLVLWD 1223 (1431)
T ss_pred             cccceeEE-EEEeccceEEecchhhhhHHhhhc----------CccccceeEEE-ecCCc---e-EEEEecCCceEEEEE
Confidence            2222 333 344568899999999887776663          22467888887 89874   3 999999999999999


Q ss_pred             ccCCCCceeecc-ccccceeEEEeecCC---CeeEEec--CCCeEEEEEcCCCceeeee
Q 022870          238 IRNPGIPLTAMK-VHLEPVLCLSIDESC---NGGISGG--ADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       238 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~---~~l~s~s--~dg~i~vw~~~~~~~~~~~  290 (291)
                      +|= +.++.++. ++..++..++.+|-.   ...++++  ..+.|.+|++.+|..-+++
T Consensus      1224 LRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1224 LRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             eec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence            996 77777765 455788888775532   3444444  5788999999999665544

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=2e-17  Score=131.23  Aligned_cols=202  Identities=18%  Similarity=0.237  Sum_probs=152.8

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecCC---CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +..-.|...|+.+.|+..|.||++...+   ..|.|+++.......-|+...+.  |.++.|+|  ...+|+.++. ..|
T Consensus       515 ~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~--vq~v~FHP--s~p~lfVaTq-~~v  589 (733)
T KOG0650|consen  515 CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGL--VQRVKFHP--SKPYLFVATQ-RSV  589 (733)
T ss_pred             EEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCc--eeEEEecC--CCceEEEEec-cce
Confidence            3444589999999999999999987653   56899999877666556544544  99999999  6678888776 589


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      ++||+....++.    .+.........                                      ++.+|.|.+++  .|
T Consensus       590 RiYdL~kqelvK----kL~tg~kwiS~--------------------------------------msihp~GDnli--~g  625 (733)
T KOG0650|consen  590 RIYDLSKQELVK----KLLTGSKWISS--------------------------------------MSIHPNGDNLI--LG  625 (733)
T ss_pred             EEEehhHHHHHH----HHhcCCeeeee--------------------------------------eeecCCCCeEE--Ee
Confidence            999998765433    33333222221                                      55889999988  57


Q ss_pred             CCcCeEEEEeCCCc-ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc------C-
Q 022870          169 EQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR------N-  240 (291)
Q Consensus       169 ~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~------~-  240 (291)
                      +.|+.+..||+.-. ++.+++.        -|    ...+.+++ |++.-+    ++++|+.||.+.|+.-.      . 
T Consensus       626 s~d~k~~WfDldlsskPyk~lr--------~H----~~avr~Va-~H~ryP----Lfas~sdDgtv~Vfhg~VY~Dl~qn  688 (733)
T KOG0650|consen  626 SYDKKMCWFDLDLSSKPYKTLR--------LH----EKAVRSVA-FHKRYP----LFASGSDDGTVIVFHGMVYNDLLQN  688 (733)
T ss_pred             cCCCeeEEEEcccCcchhHHhh--------hh----hhhhhhhh-hccccc----eeeeecCCCcEEEEeeeeehhhhcC
Confidence            78999999999855 4555555        44    33556665 998744    89999999999998532      1 


Q ss_pred             C-CCceeeccccccc----eeEEEeecCCCeeEEecCCCeEEEE
Q 022870          241 P-GIPLTAMKVHLEP----VLCLSIDESCNGGISGGADQKIVLY  279 (291)
Q Consensus       241 ~-~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~s~dg~i~vw  279 (291)
                      + -.++..+++|...    |..+.|+|...+|++++.||+|++|
T Consensus       689 pliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  689 PLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            0 1367889999776    8999999999999999999999998

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1.1e-16  Score=134.83  Aligned_cols=220  Identities=18%  Similarity=0.265  Sum_probs=151.0

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC-CcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      ..+-..+.|+|-...++++...-.|++||.+.++++..+..+.. ...|+.+.+....|..++++|+.||.|+||+--..
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            34567788999777888888778999999999999888765432 24699999987666679999999999999975433


Q ss_pred             CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  176 (291)
                      ....         ......+.......   ....+.+..                  +.|.-...++++ +|. -..|+|
T Consensus      1144 ~~~~---------~eLVTaw~~Ls~~~---~~~r~~~~v------------------~dWqQ~~G~Ll~-tGd-~r~IRI 1191 (1387)
T KOG1517|consen 1144 KWKK---------PELVTAWSSLSDQL---PGARGTGLV------------------VDWQQQSGHLLV-TGD-VRSIRI 1191 (1387)
T ss_pred             ccCC---------ceeEEeeccccccC---ccCCCCCee------------------eehhhhCCeEEe-cCC-eeEEEE
Confidence            2100         00001111000000   000000000                  446555556554 564 589999


Q ss_pred             EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC--ceeeccccccc
Q 022870          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEP  254 (291)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~h~~~  254 (291)
                      ||......+..+..       +    ....++++   +++...|. .+++|..||.|++||.+....  .+...+.|++.
T Consensus      1192 WDa~~E~~~~diP~-------~----s~t~vTaL---S~~~~~gn-~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1192 WDAHKEQVVADIPY-------G----SSTLVTAL---SADLVHGN-IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred             EecccceeEeeccc-------C----CCccceee---cccccCCc-eEEEeecCCceEEeecccCCccccceeecccCCc
Confidence            99998888877763       1    23344444   44333345 999999999999999987433  67778889887


Q ss_pred             --eeEEEeecCCCe-eEEecCCCeEEEEEcCCC
Q 022870          255 --VLCLSIDESCNG-GISGGADQKIVLYNLDHS  284 (291)
Q Consensus       255 --v~~~~~~~~~~~-l~s~s~dg~i~vw~~~~~  284 (291)
                        |..+.+.++|.. |++|+.||.|++||++..
T Consensus      1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             ccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence              999999776655 999999999999999984

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=1.5e-15  Score=114.06  Aligned_cols=198  Identities=14%  Similarity=0.243  Sum_probs=141.6

Q ss_pred             eeEEEEcCCCCEEEEecCC--CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870           21 VTDVCFHQTKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~   98 (291)
                      |--+-|+..  ++|..+.+  ..+++.+++.+..+..+.-.   .+|.++.++.    ++|+++-++ .|+|||+++.+.
T Consensus        49 IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp---t~IL~VrmNr----~RLvV~Lee-~IyIydI~~Mkl  118 (391)
T KOG2110|consen   49 IVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFP---TSILAVRMNR----KRLVVCLEE-SIYIYDIKDMKL  118 (391)
T ss_pred             EEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecC---CceEEEEEcc----ceEEEEEcc-cEEEEeccccee
Confidence            444555544  44443333  45888998887777665543   4599999988    566666665 499999999887


Q ss_pred             CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD  178 (291)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd  178 (291)
                      +.. +.+...++...++++                                      +++.+.++..-.....|.|.+||
T Consensus       119 LhT-I~t~~~n~~gl~AlS--------------------------------------~n~~n~ylAyp~s~t~GdV~l~d  159 (391)
T KOG2110|consen  119 LHT-IETTPPNPKGLCALS--------------------------------------PNNANCYLAYPGSTTSGDVVLFD  159 (391)
T ss_pred             ehh-hhccCCCccceEeec--------------------------------------cCCCCceEEecCCCCCceEEEEE
Confidence            652 112222233333322                                      33344444443334468899999


Q ss_pred             CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc-EEEEEccCCCCceeeccccc--cce
Q 022870          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAMKVHL--EPV  255 (291)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~h~--~~v  255 (291)
                      ..+-+++..+.        .|    .+.+-+++ |+|+   |. +||++++.|+ |||+.+.+ ++.+.+|+-..  ..|
T Consensus       160 ~~nl~~v~~I~--------aH----~~~lAala-fs~~---G~-llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~I  221 (391)
T KOG2110|consen  160 TINLQPVNTIN--------AH----KGPLAALA-FSPD---GT-LLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSI  221 (391)
T ss_pred             cccceeeeEEE--------ec----CCceeEEE-ECCC---CC-EEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEE
Confidence            99999999888        66    55677776 9998   54 9999999986 79999998 88888887432  468


Q ss_pred             eEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          256 LCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      .+++|++++++|++.|..++|++|.++...
T Consensus       222 ySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  222 YSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            899999999999999999999999997643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=5e-16  Score=110.48  Aligned_cols=198  Identities=16%  Similarity=0.200  Sum_probs=135.3

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~   98 (291)
                      -.|++|-..|..+-+++++.|+.+.-||+++|+..+++++|..-  |.++.--.  ....+++|++||++|+||.++.+.
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY--vH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~  190 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY--VHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKH  190 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce--eeeeeecc--cCcceeecCCCccEEEEeccccce
Confidence            46899999997666777779999999999999999999999955  99998855  457899999999999999999886


Q ss_pred             CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD  178 (291)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd  178 (291)
                      +.    .+.......+ ..+....-.                             .++.-+...++  +|. ...+.+|.
T Consensus       191 v~----~ie~yk~~~~-lRp~~g~wi-----------------------------gala~~edWlv--CGg-Gp~lslwh  233 (325)
T KOG0649|consen  191 VS----MIEPYKNPNL-LRPDWGKWI-----------------------------GALAVNEDWLV--CGG-GPKLSLWH  233 (325)
T ss_pred             eE----EeccccChhh-cCcccCcee-----------------------------EEEeccCceEE--ecC-CCceeEEe
Confidence            54    2211111000 000000000                             22333444433  555 47899999


Q ss_pred             CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEE
Q 022870          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL  258 (291)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~  258 (291)
                      +++.++...++.             .+.+.-+. |..+      .++++++.+.|.-|.+.  +..-......+...++.
T Consensus       234 Lrsse~t~vfpi-------------pa~v~~v~-F~~d------~vl~~G~g~~v~~~~l~--Gvl~a~ip~~s~~c~s~  291 (325)
T KOG0649|consen  234 LRSSESTCVFPI-------------PARVHLVD-FVDD------CVLIGGEGNHVQSYTLN--GVLQANIPVESTACYSA  291 (325)
T ss_pred             ccCCCceEEEec-------------ccceeEee-eecc------eEEEeccccceeeeeec--cEEEEeccCCccceeee
Confidence            999999888873             33444444 7755      78899988999999887  55555555545556667


Q ss_pred             EeecC-CCeeEEecCCCeEEEE
Q 022870          259 SIDES-CNGGISGGADQKIVLY  279 (291)
Q Consensus       259 ~~~~~-~~~l~s~s~dg~i~vw  279 (291)
                      .|+.+ -++|-.++..+.+.|+
T Consensus       292 s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  292 SWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             cccCCceEEEEecccceeeeee
Confidence            77322 3455555666667665

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.75  E-value=3.3e-16  Score=115.51  Aligned_cols=215  Identities=13%  Similarity=0.170  Sum_probs=157.8

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC---eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ..+.--.++|+|.+|++|+..+|.+.....|.||.....   +..++++.|...  |+.+.|+|  ..+.|++++.|..-
T Consensus         4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~--vtgvdWap--~snrIvtcs~drna   79 (361)
T KOG1523|consen    4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKI--VTGVDWAP--KSNRIVTCSHDRNA   79 (361)
T ss_pred             EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcc--eeEEeecC--CCCceeEccCCCCc
Confidence            344445689999999999999999999999999987654   467788888855  99999999  88999999999999


Q ss_pred             EEEECC-CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870           89 KCWDIE-NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (291)
Q Consensus        89 ~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (291)
                      ++|... .++....+ .-+..+....+                                       +.|+|.++.+.  .
T Consensus        80 yVw~~~~~~~Wkptl-vLlRiNrAAt~---------------------------------------V~WsP~enkFA--V  117 (361)
T KOG1523|consen   80 YVWTQPSGGTWKPTL-VLLRINRAATC---------------------------------------VKWSPKENKFA--V  117 (361)
T ss_pred             cccccCCCCeeccce-eEEEeccceee---------------------------------------EeecCcCceEE--e
Confidence            999984 44332211 11111222222                                       55999986554  4


Q ss_pred             cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC-----C-
Q 022870          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-----P-  241 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~-----~-  241 (291)
                      |+....|.+|-.+....--.-+        .-..+++..+.++. |+|++-    .|++|+.|+..||+..--     . 
T Consensus       118 gSgar~isVcy~E~ENdWWVsK--------hikkPirStv~sld-WhpnnV----LlaaGs~D~k~rVfSayIK~Vdekp  184 (361)
T KOG1523|consen  118 GSGARLISVCYYEQENDWWVSK--------HIKKPIRSTVTSLD-WHPNNV----LLAAGSTDGKCRVFSAYIKGVDEKP  184 (361)
T ss_pred             ccCccEEEEEEEecccceehhh--------hhCCccccceeeee-ccCCcc----eecccccCcceeEEEEeeeccccCC
Confidence            6656889998887654332221        12234577889998 999843    899999999999997531     0 


Q ss_pred             -----------CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          242 -----------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       242 -----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                                 ++.+.++....+.|..+.|+|+|..|+-.+.|..+.+=|.....
T Consensus       185 ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  185 APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence                       12234444456799999999999999999999999999887664

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=4e-18  Score=131.29  Aligned_cols=201  Identities=16%  Similarity=0.188  Sum_probs=155.7

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~   98 (291)
                      -.-+.+.|+.+|..|+.|+..|.|..+|..++++...+...   +.|.++.|..  +..++++ .....+.|||-..-++
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---Etv~Dv~~LH--neq~~AV-AQK~y~yvYD~~GtEl  203 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---ETVRDVTFLH--NEQFFAV-AQKKYVYVYDNNGTEL  203 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh---hhhhhhhhhc--chHHHHh-hhhceEEEecCCCcEE
Confidence            34577899999999999999999999999999998887765   4599999988  6455555 4557899999765432


Q ss_pred             CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD  178 (291)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd  178 (291)
                              ++.........                                    +.|-|.. ++++ +++..|.++--|
T Consensus       204 --------HClk~~~~v~r------------------------------------LeFLPyH-fLL~-~~~~~G~L~Y~D  237 (545)
T KOG1272|consen  204 --------HCLKRHIRVAR------------------------------------LEFLPYH-FLLV-AASEAGFLKYQD  237 (545)
T ss_pred             --------eehhhcCchhh------------------------------------hcccchh-heee-ecccCCceEEEe
Confidence                    11111111000                                    4466654 4444 666789999999


Q ss_pred             CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEE
Q 022870          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL  258 (291)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~  258 (291)
                      +.+|+.+..+..            ..+....+. -+|...    .+-+|..+|+|.+|.... ..++..+..|.++|.+|
T Consensus       238 VS~GklVa~~~t------------~~G~~~vm~-qNP~Na----Vih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~si  299 (545)
T KOG1272|consen  238 VSTGKLVASIRT------------GAGRTDVMK-QNPYNA----VIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSI  299 (545)
T ss_pred             echhhhhHHHHc------------cCCccchhh-cCCccc----eEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceE
Confidence            999999888773            133344444 777643    889999999999999998 88999999999999999


Q ss_pred             EeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          259 SIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      +++++|+|+||.+.|..++|||++....+++
T Consensus       300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t  330 (545)
T KOG1272|consen  300 AVDRGGRYMATTGLDRKVKIWDLRNFYQLHT  330 (545)
T ss_pred             EECCCCcEEeecccccceeEeeeccccccce
Confidence            9999999999999999999999998776654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.74  E-value=1.1e-14  Score=119.92  Aligned_cols=250  Identities=22%  Similarity=0.386  Sum_probs=171.2

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-EEEEEeeecCCcceEEEEE-eecCCCC-eEEEEeC-CCeE
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVAT-GPSIGLN-KVISQGR-DGTV   88 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~-~~~~~~~-~l~s~~~-dg~i   88 (291)
                      .+.+|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+..... ..+..+.+ .+  ++. .++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALSSP--DGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEECC--CcceEEeccCCCCccE
Confidence            466899999999999999999999999999999998876 6666666432 24777777 66  766 5555444 9999


Q ss_pred             EEEECCC-CCCCCCCccccccceEEEEEeecccCccceecc-CCCCceeeecccCccccccCCCCCC----cccCCCCCc
Q 022870           89 KCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (291)
Q Consensus        89 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  162 (291)
                      .+||... .....  ....+........+..... ...... .......|+....... ..+.+|..    ++|+|++..
T Consensus       137 ~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~  212 (466)
T COG2319         137 KLWDLSTPGKLIR--TLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPL-STLAGHTDPVSSLAFSPDGGL  212 (466)
T ss_pred             EEEEecCCCeEEE--EEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceE-EeeccCCCceEEEEEcCCcce
Confidence            9999987 32211  1222222333333333333 111122 2455666666552222 22222433    888888873


Q ss_pred             EEEEecCCcCeEEEEeCCCcceee-EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                      +++ +++.|+.+++||...+.... .+.        +|.... ..    . |+|++   . ++++++.|+.+++||++..
T Consensus       213 ~~~-~~~~d~~i~~wd~~~~~~~~~~~~--------~~~~~~-~~----~-~~~~~---~-~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         213 LIA-SGSSDGTIRLWDLSTGKLLRSTLS--------GHSDSV-VS----S-FSPDG---S-LLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             EEE-EecCCCcEEEEECCCCcEEeeecC--------CCCcce-eE----e-ECCCC---C-EEEEecCCCcEEEeeecCC
Confidence            443 55779999999998777766 455        553321 11    3 99884   3 7889999999999999974


Q ss_pred             CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      ...+..+.+|...|.++.|+|++..+++++.|+.+++|+........
T Consensus       274 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  320 (466)
T COG2319         274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS  320 (466)
T ss_pred             CcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence            44344457788999999999988888889999999999998876554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.74  E-value=2.5e-16  Score=123.65  Aligned_cols=226  Identities=17%  Similarity=0.191  Sum_probs=147.1

Q ss_pred             CCCCEEEEecCCCeEEEEeCCCCeEEEEE--eeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccc
Q 022870           28 QTKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLT  105 (291)
Q Consensus        28 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  105 (291)
                      +.+.-++.|-.-|.|.+.|....+..+.+  ..+-....|+|+.|.|- +...++.+-.+|.+.+||.+-..-...|...
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg-~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG-SDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeC-CCceEEEEEecCceEEeeccccccCCCCccc
Confidence            45667778888888988886542221111  11222245999999995 3367778888999999987533222222222


Q ss_pred             cccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCccee
Q 022870          106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC  185 (291)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~  185 (291)
                      ...............      -........|.+.....        ...+|+|||+++.  +-+.||.+||||..+.+.+
T Consensus       262 ~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~i--------n~f~FS~DG~~LA--~VSqDGfLRvF~fdt~eLl  325 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKS------KKTRNPVARWHIGEGSI--------NEFAFSPDGKYLA--TVSQDGFLRIFDFDTQELL  325 (636)
T ss_pred             ccCCCCeeEEeeeec------cccCCccceeEeccccc--------cceeEcCCCceEE--EEecCceEEEeeccHHHHH
Confidence            211111111000000      00001111222211111        1178999998765  4457999999999998887


Q ss_pred             eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeec---
Q 022870          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE---  262 (291)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~---  262 (291)
                      ..++.            .-+-..+++ |+||   |+ ||++|++|--|.||.+.. ++.+..=++|..+|+.++|+|   
T Consensus       326 g~mkS------------YFGGLLCvc-WSPD---GK-yIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDpytt  387 (636)
T KOG2394|consen  326 GVMKS------------YFGGLLCVC-WSPD---GK-YIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDPYTT  387 (636)
T ss_pred             HHHHh------------hccceEEEE-EcCC---cc-EEEecCCcceEEEEEecc-ceEEEeccccccceeeEeeccccc
Confidence            76663            245567786 9999   55 999999999999999998 899999999999999999982   


Q ss_pred             ---------------------------------------------CCCeeEEecCCCeEEEEEcCCCceee
Q 022870          263 ---------------------------------------------SCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       263 ---------------------------------------------~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                                                                   ..-.+.+.+.|-++.+||+....+.+
T Consensus       388 ~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  388 STEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             ccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence                                                         11246788899999999998766543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.74  E-value=1.5e-17  Score=136.74  Aligned_cols=246  Identities=17%  Similarity=0.238  Sum_probs=168.7

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      ++.|.||...|+|..|...|.++++|+.|..|+||..+++.++....+|...  |+.++.+.  +..++++++.|..|++
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d--itdlavs~--~n~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGD--ITDLAVSS--NNTMIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccc--cchhccch--hhhhhhhcccCceEEE
Confidence            4567899999999999999999999999999999999999999999999976  99999998  6678889999999999


Q ss_pred             EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeeccc-Cc-ccccc---------------------
Q 022870           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GE-TVDTD---------------------  147 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~---------------------  147 (291)
                      |.+..+..+.  ++..+........+++..     .....+...+|+.+- .. .....                     
T Consensus       259 Wrl~~~~pvs--vLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f  331 (1113)
T KOG0644|consen  259 WRLPDGAPVS--VLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF  331 (1113)
T ss_pred             EecCCCchHH--HHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence            9999886544  444444444444444333     223333344444330 00 00000                     


Q ss_pred             CCC--------CCC--cccCCCCCcEEEEecC-----------CcCeEEEEeCCCcceeeEecccccCCCCCCCCCccee
Q 022870          148 SLC--------DSK--DDVPAEGPKYMAVAGE-----------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM  206 (291)
Q Consensus       148 ~~~--------~~~--~~~~~~~~~~~~~~g~-----------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (291)
                      ..+        |..  +++....  +++++++           .+-.+.+|++.++.....+.        +|..    .
T Consensus       332 ~Tgs~d~ea~n~e~~~l~~~~~~--lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~--------ghsd----~  397 (1113)
T KOG0644|consen  332 LTGSRDGEARNHEFEQLAWRSNL--LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM--------GHSD----E  397 (1113)
T ss_pred             ccccCCcccccchhhHhhhhccc--eEEEeccccccccceeeeeeeEeeeeecccchhhhhhc--------cccc----c
Confidence            000        000  2222111  1222222           34557788888887776666        6644    3


Q ss_pred             eeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      .+.+. ++|-.+  + ...+++.||.+.|||+-. +.+++........+..-.|+++|..++....-|.+.|.....++-
T Consensus       398 ~yvLd-~Hpfn~--r-i~msag~dgst~iwdi~e-g~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  398 VYVLD-VHPFNP--R-IAMSAGYDGSTIIWDIWE-GIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             eeeee-ecCCCc--H-hhhhccCCCceEeeeccc-CCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            44454 777632  2 678899999999999988 777766543355667779999999988888889999988765543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.73  E-value=7.5e-15  Score=120.82  Aligned_cols=211  Identities=26%  Similarity=0.501  Sum_probs=152.8

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecC-CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCC-eEEEEeCCC
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDG   86 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg   86 (291)
                      .....+.+|...|.+++|+|++..+++++. |+.+++|+...+..+..+..|...  |.+++|+|  ++. .+++++.|+
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~~~~~~~~d~  221 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP--VSSLAFSP--DGGLLIASGSSDG  221 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc--eEEEEEcC--CcceEEEEecCCC
Confidence            556778899999999999999998888886 999999999988888888887754  99999998  777 555569999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (291)
                      .|++||...+.....   .+..+.....                                       ..|+|++. +++ 
T Consensus       222 ~i~~wd~~~~~~~~~---~~~~~~~~~~---------------------------------------~~~~~~~~-~~~-  257 (466)
T COG2319         222 TIRLWDLSTGKLLRS---TLSGHSDSVV---------------------------------------SSFSPDGS-LLA-  257 (466)
T ss_pred             cEEEEECCCCcEEee---ecCCCCccee---------------------------------------EeECCCCC-EEE-
Confidence            999998774433210   0111100000                                       12888884 444 


Q ss_pred             ecCCcCeEEEEeCCCcce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          167 AGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                      +++.|+.+++||++.... ...+.        +|    ...+.++. |.|+   +. .+++++.|+.+.+||..+ ....
T Consensus       258 ~~~~d~~~~~~~~~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~~~~~~~d~~~~~~~~~~-~~~~  319 (466)
T COG2319         258 SGSSDGTIRLWDLRSSSSLLRTLS--------GH----SSSVLSVA-FSPD---GK-LLASGSSDGTVRLWDLET-GKLL  319 (466)
T ss_pred             EecCCCcEEEeeecCCCcEEEEEe--------cC----CccEEEEE-ECCC---CC-EEEEeeCCCcEEEEEcCC-CceE
Confidence            677799999999997765 33332        44    33455565 9995   33 666688889999999887 5544


Q ss_pred             eecc--ccccceeEEEeecCCCeeEEe-cCCCeEEEEEcCCCc
Q 022870          246 TAMK--VHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHST  285 (291)
Q Consensus       246 ~~~~--~h~~~v~~~~~~~~~~~l~s~-s~dg~i~vw~~~~~~  285 (291)
                      ....  .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         320 SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            4444  788889999993332455555 688999999998876

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.8e-15  Score=124.24  Aligned_cols=207  Identities=10%  Similarity=0.060  Sum_probs=129.3

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCC---CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCC
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDG   86 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg   86 (291)
                      .+.+..|...+...+|+|||+.|+..+.+   ..|++||+.+++.... ....  .....++|+|  ||+.|+.++ .+|
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~--g~~~~~~wSP--DG~~La~~~~~~g  270 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFR--GHNGAPAFSP--DGSRLAFASSKDG  270 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCC--CccCceeECC--CCCEEEEEEecCC
Confidence            45567788899999999999999887643   4799999987754322 1111  1245789999  999888654 688


Q ss_pred             eEEEE--ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           87 TVKCW--DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        87 ~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      .+.||  |+.+++..     .+.......                                      ...+|+|+|+.++
T Consensus       271 ~~~Iy~~d~~~~~~~-----~lt~~~~~~--------------------------------------~~~~wSpDG~~i~  307 (429)
T PRK01742        271 VLNIYVMGANGGTPS-----QLTSGAGNN--------------------------------------TEPSWSPDGQSIL  307 (429)
T ss_pred             cEEEEEEECCCCCeE-----eeccCCCCc--------------------------------------CCEEECCCCCEEE
Confidence            76665  55444321     111100000                                      0055999998776


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                      ++ +..++...||++..........        .+.    +  .... |+|+   |+ .|+.++.++ +.+||+.+ +..
T Consensus       308 f~-s~~~g~~~I~~~~~~~~~~~~l--------~~~----~--~~~~-~SpD---G~-~ia~~~~~~-i~~~Dl~~-g~~  365 (429)
T PRK01742        308 FT-SDRSGSPQVYRMSASGGGASLV--------GGR----G--YSAQ-ISAD---GK-TLVMINGDN-VVKQDLTS-GST  365 (429)
T ss_pred             EE-ECCCCCceEEEEECCCCCeEEe--------cCC----C--CCcc-CCCC---CC-EEEEEcCCC-EEEEECCC-CCe
Confidence            64 4456788888765432211111        111    1  2344 9998   54 676666654 66699987 543


Q ss_pred             eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC--CCceeee
Q 022870          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD--HSTVSHC  289 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~--~~~~~~~  289 (291)
                      ......+  ...++.|+|+|++|+.++.++.+.+|.+.  +++..+.
T Consensus       366 ~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~  410 (429)
T PRK01742        366 EVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR  410 (429)
T ss_pred             EEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence            3222222  23567899999999999999988888753  4554443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.72  E-value=2.7e-15  Score=111.87  Aligned_cols=261  Identities=15%  Similarity=0.198  Sum_probs=165.9

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-----EEEEEeeecCC----------cceEEEEEeecCCCCeEEEE
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSAA----------HGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~s~   82 (291)
                      .+-|.++.|...|.+||||..+|.|.++.-+...     ....++.|...          +.|..+.|.+..+...++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4568899999999999999999999999754322     22334444321          45889999984444577888


Q ss_pred             eCCCeEEEEECCCCCCCC------------------CCccc--------------cccceEEEEEeecccCccceeccCC
Q 022870           83 GRDGTVKCWDIENGGLSS------------------NPSLT--------------IKTNSYHFCKLSLVKEPYANAKQAN  130 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~------------------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~  130 (291)
                      ..|.+|++|.+.......                  .|+..              .+.+..+...++...........+.
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd  184 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD  184 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence            899999999986543221                  01110              0122333344444444444455555


Q ss_pred             CCceeeecccCccc---cccCCCCCC--------cccCCCCCcEEEEecCCcCeEEEEeCCCccee----eEecccccCC
Q 022870          131 EPKDCYEREVGETV---DTDSLCDSK--------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC----TRLHQNSCGG  195 (291)
Q Consensus       131 ~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~----~~~~~~~~~~  195 (291)
                      .....|.+.....-   ....+..-.        ..|+|..-++++-+.+ .|+|++-|+|.....    ..+..+..+.
T Consensus       185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS-KGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS-KGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC-CCcEEEeechhhhhhcchhhhhccccCCc
Confidence            55666655433211   111111100        6799998888887666 699999999965432    2222222222


Q ss_pred             CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc------------ce---eEEEe
Q 022870          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE------------PV---LCLSI  260 (291)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~------------~v---~~~~~  260 (291)
                      .+.+..+.-..+..+. |+++   |+ ++++-.. -+|++||+....+++...+-|..            .|   ..++|
T Consensus       264 ~rsffseiIsSISDvK-Fs~s---Gr-yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~  337 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVK-FSHS---GR-YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW  337 (433)
T ss_pred             chhhHHHHhhhhhceE-EccC---Cc-EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence            2222233445677787 9988   65 7766543 58999999665788888776642            22   46789


Q ss_pred             ecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          261 DESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       261 ~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      +.++.+++|||..+.+++++...|.
T Consensus       338 sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  338 SGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             cCCcceEecccccceEEEecCCCCc
Confidence            9999999999999999999976554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.71  E-value=1.2e-14  Score=117.59  Aligned_cols=210  Identities=12%  Similarity=0.123  Sum_probs=129.3

Q ss_pred             CCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE--------EEEe-------------------
Q 022870            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--------SSSW-------------------   57 (291)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--------~~~~-------------------   57 (291)
                      |..+..+.+|+||++.|+|++|+.||+.+|+|+.|..|.+|+..-.-.+        ..+.                   
T Consensus        40 ~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglW  119 (1081)
T KOG1538|consen   40 TSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLW  119 (1081)
T ss_pred             CCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhcccc
Confidence            3455678899999999999999999999999999999999985422111        1110                   


Q ss_pred             --------eecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccc---ccceEEEEEeecccCcc---
Q 022870           58 --------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI---KTNSYHFCKLSLVKEPY---  123 (291)
Q Consensus        58 --------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---  123 (291)
                              .+.....|.+++|..  ||.+|+.|-.||+|.+=+-...+...   +.-   ...+.....+++...+.   
T Consensus       120 S~~qK~V~K~kss~R~~~CsWtn--DGqylalG~~nGTIsiRNk~gEek~~---I~Rpgg~Nspiwsi~~~p~sg~G~~d  194 (1081)
T KOG1538|consen  120 SPEQKSVSKHKSSSRIICCSWTN--DGQYLALGMFNGTISIRNKNGEEKVK---IERPGGSNSPIWSICWNPSSGEGRND  194 (1081)
T ss_pred             ChhhhhHHhhhhheeEEEeeecC--CCcEEEEeccCceEEeecCCCCcceE---EeCCCCCCCCceEEEecCCCCCCccc
Confidence                    122223467777777  99999999999999987654332211   111   11122222222222110   


Q ss_pred             ceec-cCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCC
Q 022870          124 ANAK-QANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS  200 (291)
Q Consensus       124 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  200 (291)
                      ..+. .-+.....+.+...........+...  +.+-++|+++++  |+.|+.+++| .+.|-.+.++..          
T Consensus       195 i~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li--GGsdk~L~~f-TR~GvrLGTvg~----------  261 (1081)
T KOG1538|consen  195 ILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL--GGSDKQLSLF-TRDGVRLGTVGE----------  261 (1081)
T ss_pred             eEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE--ccCCCceEEE-eecCeEEeeccc----------
Confidence            1111 11112222222222222122222222  677789988874  4448999999 455655555541          


Q ss_pred             CCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                        ...+++.+. ..|+   ++ +++.|+.||+|.-|++-
T Consensus       262 --~D~WIWtV~-~~PN---sQ-~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  262 --QDSWIWTVQ-AKPN---SQ-YVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             --cceeEEEEE-EccC---Cc-eEEEEEccCeeehhhhH
Confidence              466899998 9998   55 89999999999998864

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=2.6e-15  Score=113.55  Aligned_cols=251  Identities=14%  Similarity=0.173  Sum_probs=163.8

Q ss_pred             CccceeEEEEcCCCC--EEEEecCCCeEEEEeCCCCeEEEEE----eeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           17 HRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        17 h~~~v~~l~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      -...|..++|.-+++  .+...+.|..+..+.++...+...+    ..+....+|..++...    ..|++|-.+|.+.+
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d----g~Litc~~sG~l~~  129 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD----GTLITCVSSGNLQV  129 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC----CEEEEEecCCcEEE
Confidence            456788888876543  4555557777888877766555443    2233335588887765    68888899999999


Q ss_pred             EECCCCCCCCCCccccccceEEEEEeecccCccceeccC-C--CCceeeecccCccccccCCCCCC------------cc
Q 022870           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-N--EPKDCYEREVGETVDTDSLCDSK------------DD  155 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~------------~~  155 (291)
                      |..+.+..-..+...+.........-.....+...+... .  ....+|++.....+-........            +.
T Consensus       130 ~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  130 RHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             EeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence            999865533333444444433322222222222222111 1  23566666555322221111111            56


Q ss_pred             cCCCCCcEEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (291)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (291)
                      |-+.....-++++..-+.+++||++.++ ++..+..            ....+.++. ..|+   |. ++++|..-|.+.
T Consensus       210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~------------~E~~is~~~-l~p~---gn-~Iy~gn~~g~l~  272 (412)
T KOG3881|consen  210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF------------LENPISSTG-LTPS---GN-FIYTGNTKGQLA  272 (412)
T ss_pred             ecCCCCCceEEEEecceeEEEecCcccCcceeEecc------------ccCcceeee-ecCC---Cc-EEEEecccchhh
Confidence            6665222222255566999999999765 4555542            234566665 7777   44 899999999999


Q ss_pred             EEEccCCCCceee-ccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          235 VWDIRNPGIPLTA-MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       235 vwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .||++. ++.... +++-.+.|.+|..+|+.++|+++|-|..+||+|+++.++++.
T Consensus       273 ~FD~r~-~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  273 KFDLRG-GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             eecccC-ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence            999998 666655 889999999999999999999999999999999999887765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.70  E-value=3.5e-15  Score=108.36  Aligned_cols=110  Identities=11%  Similarity=0.247  Sum_probs=84.8

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC---C
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---D  230 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---d  230 (291)
                      ++|+|+|+.++++.|..++.|.+||++ .+.+..+..              .....+. |+|+   |+ +|++|+.   .
T Consensus        65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--------------~~~n~i~-wsP~---G~-~l~~~g~~n~~  124 (194)
T PF08662_consen   65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--------------QPRNTIS-WSPD---GR-FLVLAGFGNLN  124 (194)
T ss_pred             EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--------------CCceEEE-ECCC---CC-EEEEEEccCCC
Confidence            669999999888888878899999997 556666651              2334565 9998   55 7776653   5


Q ss_pred             CcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecC------CCeEEEEEcCCCce
Q 022870          231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA------DQKIVLYNLDHSTV  286 (291)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------dg~i~vw~~~~~~~  286 (291)
                      |.|.+||.++ .+.+.... | ..++.++|+|+|++|++++.      |+.++||++....+
T Consensus       125 G~l~~wd~~~-~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  125 GDLEFWDVRK-KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             cEEEEEECCC-CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence            7899999997 67776665 3 34789999999999998874      78899999975543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.70  E-value=3.5e-16  Score=118.70  Aligned_cols=180  Identities=18%  Similarity=0.200  Sum_probs=135.2

Q ss_pred             ccceeEEEEcCCCC-EEEEecCCCeEEEEeCCCCe---------EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870           18 RASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHR---------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus        18 ~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      ..+|..+.|.++.. .++||+.|..|++|.++.+.         .+..+..|..+  |+++.|+|  +|++|++|+.+|.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~a--VN~vRf~p--~gelLASg~D~g~   88 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRA--VNVVRFSP--DGELLASGGDGGE   88 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcce--eEEEEEcC--CcCeeeecCCCce
Confidence            46899999999665 99999999999999876431         23445567755  99999999  9999999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (291)
                      |.+|....-..                                                         + +. +.-    
T Consensus        89 v~lWk~~~~~~---------------------------------------------------------~-~~-d~e----  105 (434)
T KOG1009|consen   89 VFLWKQGDVRI---------------------------------------------------------F-DA-DTE----  105 (434)
T ss_pred             EEEEEecCcCC---------------------------------------------------------c-cc-cch----
Confidence            99998765110                                                         0 00 000    


Q ss_pred             cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (291)
                      ...+.       +.......+.        +|.    ..++.++ |+|++   . ++++|+.|..+++||+.. ++....
T Consensus       106 ~~~~k-------e~w~v~k~lr--------~h~----~diydL~-Ws~d~---~-~l~s~s~dns~~l~Dv~~-G~l~~~  160 (434)
T KOG1009|consen  106 ADLNK-------EKWVVKKVLR--------GHR----DDIYDLA-WSPDS---N-FLVSGSVDNSVRLWDVHA-GQLLAI  160 (434)
T ss_pred             hhhCc-------cceEEEEEec--------ccc----cchhhhh-ccCCC---c-eeeeeeccceEEEEEecc-ceeEee
Confidence            00000       0011122222        442    2455555 99984   4 999999999999999998 999999


Q ss_pred             ccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      +..|...|..++|+|-++++++-|.|...+.+.+...+.++.
T Consensus       161 ~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~  202 (434)
T KOG1009|consen  161 LDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR  202 (434)
T ss_pred             ccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence            999999999999999999999999999888888887766654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=7.5e-15  Score=110.39  Aligned_cols=203  Identities=12%  Similarity=0.179  Sum_probs=137.4

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC--eEEEEECCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIEN   95 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~   95 (291)
                      ...+..+.|+.+...|..|+.|| .++++.+............  ..|..+-|+.    .+++..+.+.  .+++++++.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~--~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~Kk   77 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEG--VSIVEMLFSS----SLVAIVSIKQPRKLKVVHFKK   77 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCC--eEEEEeeccc----ceeEEEecCCCceEEEEEccc
Confidence            45677788999999999999998 5788876543322211112  3466677776    6776665544  488888876


Q ss_pred             CCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEE
Q 022870           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE  175 (291)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  175 (291)
                      ...+.+..  ....   ...                                      +.++.  +++++ +-  ...|+
T Consensus        78 ~~~ICe~~--fpt~---IL~--------------------------------------VrmNr--~RLvV-~L--ee~Iy  109 (391)
T KOG2110|consen   78 KTTICEIF--FPTS---ILA--------------------------------------VRMNR--KRLVV-CL--EESIY  109 (391)
T ss_pred             CceEEEEe--cCCc---eEE--------------------------------------EEEcc--ceEEE-EE--cccEE
Confidence            65432111  1100   000                                      11222  34554 33  34599


Q ss_pred             EEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe--ecCCCcEEEEEccCCCCceeecccccc
Q 022870          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSILVWDIRNPGIPLTAMKVHLE  253 (291)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~h~~  253 (291)
                      |||+++.+.+.++..        -+....+. .   +++|+.. +. +++-  ....|.|.+||..+ -+++..+..|++
T Consensus       110 IydI~~MklLhTI~t--------~~~n~~gl-~---AlS~n~~-n~-ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~  174 (391)
T KOG2110|consen  110 IYDIKDMKLLHTIET--------TPPNPKGL-C---ALSPNNA-NC-YLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKG  174 (391)
T ss_pred             EEecccceeehhhhc--------cCCCccce-E---eeccCCC-Cc-eEEecCCCCCceEEEEEccc-ceeeeEEEecCC
Confidence            999999999988873        11112222 2   4666643 22 5553  23469999999998 899999999999


Q ss_pred             ceeEEEeecCCCeeEEecCCCe-EEEEEcCCCceeeee
Q 022870          254 PVLCLSIDESCNGGISGGADQK-IVLYNLDHSTVSHCV  290 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~-i~vw~~~~~~~~~~~  290 (291)
                      ++-+++|+++|.+|||+|+.|+ |||+.+.+|+.++.+
T Consensus       175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF  212 (391)
T KOG2110|consen  175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF  212 (391)
T ss_pred             ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence            9999999999999999999997 899999999988764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=3.4e-15  Score=109.70  Aligned_cols=167  Identities=17%  Similarity=0.196  Sum_probs=112.7

Q ss_pred             eecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeee
Q 022870           58 VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYE  137 (291)
Q Consensus        58 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (291)
                      +|.  +-|+++.|.+  -|+++++++.|++|+|||.+...-.....-..+.+......                      
T Consensus        11 ~h~--DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~r----------------------   64 (361)
T KOG2445|consen   11 GHK--DLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWR----------------------   64 (361)
T ss_pred             CCc--ceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEE----------------------
Confidence            455  4499999999  89999999999999999986554322111122222211111                      


Q ss_pred             cccCccccccCCCCCCccc-CCCCCcEEEEecCCcCeEEEEeCCC---------cceeeEecccccCCCCCCCCCcceee
Q 022870          138 REVGETVDTDSLCDSKDDV-PAEGPKYMAVAGEQLSEVEIWDLNT---------AERCTRLHQNSCGGSPNFSSKGRGMC  207 (291)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (291)
                                      +.| +|.-..++| +++.|+++.||.-..         .....++.            ..+..+
T Consensus        65 ----------------V~WAhPEfGqvvA-~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~------------DsrssV  115 (361)
T KOG2445|consen   65 ----------------VVWAHPEFGQVVA-TCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV------------DSRSSV  115 (361)
T ss_pred             ----------------EEecCccccceEE-EEecCCceeeeeecccccccccceeEEEEEee------------cCCcce
Confidence                            222 344445565 667799999997521         11122222            246678


Q ss_pred             eeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc-------------------------------------------
Q 022870          208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP-------------------------------------------  244 (291)
Q Consensus       208 ~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~-------------------------------------------  244 (291)
                      +.+. |.|..- |- .|++++.||.+|||+.-++...                                           
T Consensus       116 ~DV~-FaP~hl-GL-klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~  192 (361)
T KOG2445|consen  116 TDVK-FAPKHL-GL-KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSD  192 (361)
T ss_pred             eEEE-ecchhc-ce-EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcc
Confidence            8888 999754 65 8999999999999976542210                                           


Q ss_pred             -----------------------eeeccccccceeEEEeecC----CCeeEEecCCCeEEEEEcCC
Q 022870          245 -----------------------LTAMKVHLEPVLCLSIDES----CNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       245 -----------------------~~~~~~h~~~v~~~~~~~~----~~~l~s~s~dg~i~vw~~~~  283 (291)
                                             +.++.+|..+|++|+|.|+    ..+||+++.|| |+||++..
T Consensus       193 e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  193 EDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV  257 (361)
T ss_pred             cCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence                                   3345578889999999875    45689999999 99999874

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.1e-14  Score=120.72  Aligned_cols=250  Identities=21%  Similarity=0.251  Sum_probs=157.0

Q ss_pred             ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCC-CeEEEEeCCCeEEEEE
Q 022870           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCWD   92 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd   92 (291)
                      +-|-...-..-.|++|+++++... +..|+||...++.++..++.|..  +++++.+.|.... .++++++.||.|++||
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a--~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd   88 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTA--PLTSVIVLPSSENANYLIVCSLDGTIRVWD   88 (792)
T ss_pred             eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccC--ccceeeecCCCccceEEEEEecCccEEEec
Confidence            444444344456899998887665 46899999999999999999884  4999999985332 4677999999999999


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccc-ee--------------ccCCCCceeeecccCccccccCC-C---CCC
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NA--------------KQANEPKDCYEREVGETVDTDSL-C---DSK  153 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~---~~~  153 (291)
                      ...+.+..  .+..... .+...+.+...... ..              .........+.+.........+. .   +..
T Consensus        89 ~~~~~Llk--t~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~  165 (792)
T KOG1963|consen   89 WSDGELLK--TFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS  165 (792)
T ss_pred             CCCcEEEE--EEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence            99887655  2221111 11111111111100 00              00011111111111111111111 1   122


Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                      +.+++.|....++-   +..+.+|+...+. .......   ....|..    ...+.+ ++|.   ++ ++++|..||.|
T Consensus       166 I~~~~~ge~~~i~~---~~~~~~~~v~~~~-~~~~~~~---~~~~Htf----~~t~~~-~spn---~~-~~Aa~d~dGrI  229 (792)
T KOG1963|consen  166 IVDNNSGEFKGIVH---MCKIHIYFVPKHT-KHTSSRD---ITVHHTF----NITCVA-LSPN---ER-YLAAGDSDGRI  229 (792)
T ss_pred             EEEcCCceEEEEEE---eeeEEEEEecccc-eeeccch---hhhhhcc----cceeEE-eccc---cc-eEEEeccCCcE
Confidence            77888886655432   4679999988755 1111100   0012322    245565 9998   44 99999999999


Q ss_pred             EEEEccC---CCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          234 LVWDIRN---PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       234 ~vwd~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      .+|.--.   .......+.-|.+.|++++|+++|.+|.|||..|.+-+|.+.+++
T Consensus       230 ~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  230 LVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             EEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence            9996321   123345677899999999999999999999999999999999876

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=3.4e-15  Score=126.12  Aligned_cols=210  Identities=17%  Similarity=0.187  Sum_probs=138.5

Q ss_pred             eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCC
Q 022870           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  101 (291)
                      .-++|.....+|+++|.-..|+|||.....++..+..... ..|+++.-+-. .|+.+++|..||.|++||.+...... 
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds- 1245 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDS- 1245 (1387)
T ss_pred             eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeeccccc-CCceEEEeecCCceEEeecccCCccc-
Confidence            4467877544666666678999999998888887765543 45777765542 57999999999999999998654321 


Q ss_pred             CccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCC
Q 022870          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (291)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~  181 (291)
                      .+...+.+........                                    +.+.+.|-.-++ +|+.||.|++||+|.
T Consensus      1246 ~v~~~R~h~~~~~Iv~------------------------------------~slq~~G~~elv-Sgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVH------------------------------------LSLQRQGLGELV-SGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             cceeecccCCccccee------------------------------------EEeecCCCccee-eeccCCeEEEEeccc
Confidence            0111111100000000                                    335555543233 788999999999998


Q ss_pred             cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc-------ccc
Q 022870          182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-------LEP  254 (291)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h-------~~~  254 (291)
                      ......+...      .|.. ..+..+++. .++..+    .+|+|+. +.|.||++.  ++.+..++.+       .+.
T Consensus      1289 ~~~e~~~~iv------~~~~-yGs~lTal~-VH~hap----iiAsGs~-q~ikIy~~~--G~~l~~~k~n~~F~~q~~gs 1353 (1387)
T KOG1517|consen 1289 SSKETFLTIV------AHWE-YGSALTALT-VHEHAP----IIASGSA-QLIKIYSLS--GEQLNIIKYNPGFMGQRIGS 1353 (1387)
T ss_pred             Ccccccceee------eccc-cCccceeee-eccCCC----eeeecCc-ceEEEEecC--hhhhcccccCcccccCcCCC
Confidence            5322222210      1211 112356665 776643    8999988 999999997  5555554433       346


Q ss_pred             eeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       255 v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      +.+++|+|-..++|+|+.|..|.||..+.+++
T Consensus      1354 ~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1354 VSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred             cceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence            79999999999999999999999999887654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=1.1e-13  Score=102.23  Aligned_cols=179  Identities=15%  Similarity=0.281  Sum_probs=129.2

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC-CCCCCCccccccceEEEEEeec
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSL  118 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~  118 (291)
                      ..|.|||=...+++.++...   .+|.++.+.+    +.+++.-. +.|.+|...+. +...  .+....++...|...+
T Consensus        75 NkviIWDD~k~~~i~el~f~---~~I~~V~l~r----~riVvvl~-~~I~VytF~~n~k~l~--~~et~~NPkGlC~~~~  144 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFN---SEIKAVKLRR----DRIVVVLE-NKIYVYTFPDNPKLLH--VIETRSNPKGLCSLCP  144 (346)
T ss_pred             ceEEEEecccCcEEEEEEec---cceeeEEEcC----CeEEEEec-CeEEEEEcCCChhhee--eeecccCCCceEeecC
Confidence            57999996667788777654   5599999988    46665554 68999998844 3322  2222222223332222


Q ss_pred             ccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcce--eeEecccccCCC
Q 022870          119 VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGS  196 (291)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~--~~~~~~~~~~~~  196 (291)
                      .                                       .+..+++.-|-.-|.|.|-|+...+.  ...+.       
T Consensus       145 ~---------------------------------------~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-------  178 (346)
T KOG2111|consen  145 T---------------------------------------SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN-------  178 (346)
T ss_pred             C---------------------------------------CCceEEEcCCCccceEEEEEhhhcCcCCceEEE-------
Confidence            1                                       23456777788889999999987665  34455       


Q ss_pred             CCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc-EEEEEccCCCCceeeccc--cccceeEEEeecCCCeeEEecCC
Q 022870          197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAMKV--HLEPVLCLSIDESCNGGISGGAD  273 (291)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~d  273 (291)
                       +|    ...+.+++ .+-+   |. .+|+++..|+ |||||..+ +.++.+++-  ..+.|.+|+|+|+..+||.+|+.
T Consensus       179 -AH----~s~Iacv~-Ln~~---Gt-~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK  247 (346)
T KOG2111|consen  179 -AH----DSDIACVA-LNLQ---GT-LVATASTKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK  247 (346)
T ss_pred             -cc----cCceeEEE-EcCC---cc-EEEEeccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence             56    34556665 7776   55 9999999986 89999999 888888873  24579999999999999999999


Q ss_pred             CeEEEEEcCCCc
Q 022870          274 QKIVLYNLDHST  285 (291)
Q Consensus       274 g~i~vw~~~~~~  285 (291)
                      |+++|+.++...
T Consensus       248 gTlHiF~l~~~~  259 (346)
T KOG2111|consen  248 GTLHIFSLRDTE  259 (346)
T ss_pred             CeEEEEEeecCC
Confidence            999999987643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.66  E-value=1.2e-15  Score=122.47  Aligned_cols=189  Identities=19%  Similarity=0.273  Sum_probs=134.8

Q ss_pred             ecCCCeEEEEeCCCC-eEEE-EEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCC---C--cccccc
Q 022870           36 GTTGGELRIWDTVQH-RTVS-SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN---P--SLTIKT  108 (291)
Q Consensus        36 ~~~dg~v~iwd~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~--~~~~~~  108 (291)
                      ++..|.|-||+++.. ++.. .+.+-.....|+.+.|.|. |..+|+.++.||.|++|.+..+.....   |  +++++.
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~  677 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPF-DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG  677 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCC-ChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence            456789999998753 2211 1111111144999999998 558999999999999999987765331   1  111111


Q ss_pred             ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEe
Q 022870          109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (291)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~  188 (291)
                      .....                                        +.|+|-...+++ +++.|-+|++||+++.+....+
T Consensus       678 eKI~s----------------------------------------lRfHPLAadvLa-~asyd~Ti~lWDl~~~~~~~~l  716 (1012)
T KOG1445|consen  678 EKITS----------------------------------------LRFHPLAADVLA-VASYDSTIELWDLANAKLYSRL  716 (1012)
T ss_pred             ceEEE----------------------------------------EEecchhhhHhh-hhhccceeeeeehhhhhhhhee
Confidence            11111                                        558887777777 4566999999999999988888


Q ss_pred             cccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc-cceeEEEeecCCCee
Q 022870          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-EPVLCLSIDESCNGG  267 (291)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l  267 (291)
                      .        +|.    +.++.++ |+|+   |+ .+++.+.||+|+||..++..+++++-.+-. ..--.|.|.-+|+++
T Consensus       717 ~--------gHt----dqIf~~A-WSpd---Gr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~v  779 (1012)
T KOG1445|consen  717 V--------GHT----DQIFGIA-WSPD---GR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIV  779 (1012)
T ss_pred             c--------cCc----CceeEEE-ECCC---Cc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEE
Confidence            7        774    4677776 9999   66 899999999999999998667776655432 234567888889998


Q ss_pred             EEecCC----CeEEEEEcCC
Q 022870          268 ISGGAD----QKIVLYNLDH  283 (291)
Q Consensus       268 ~s~s~d----g~i~vw~~~~  283 (291)
                      +..+.|    .+|.+||.++
T Consensus       780 iv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  780 IVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             EEecccccchhhhhhhhhhh
Confidence            888776    4578887664

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.66  E-value=3.3e-15  Score=117.60  Aligned_cols=176  Identities=17%  Similarity=0.263  Sum_probs=131.0

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccce
Q 022870           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (291)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  110 (291)
                      ..|+.++.||.+.+-+ ..++....+..|..+  +.+-.|+|  ||.-|+++++||.|++|.-...- ..  . -.+...
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A--~~~gRW~~--dGtgLlt~GEDG~iKiWSrsGML-RS--t-l~Q~~~  146 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAA--ISSGRWSP--DGAGLLTAGEDGVIKIWSRSGML-RS--T-VVQNEE  146 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhh--hhhcccCC--CCceeeeecCCceEEEEeccchH-HH--H-HhhcCc
Confidence            4688889999999988 568888888899866  99999999  99999999999999999865321 11  0 111112


Q ss_pred             EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecc
Q 022870          111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (291)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~  190 (291)
                      ...|                                       ++|.|+.+.++.+.|   +.+.+=.+..+..+-..+ 
T Consensus       147 ~v~c---------------------------------------~~W~p~S~~vl~c~g---~h~~IKpL~~n~k~i~Wk-  183 (737)
T KOG1524|consen  147 SIRC---------------------------------------ARWAPNSNSIVFCQG---GHISIKPLAANSKIIRWR-  183 (737)
T ss_pred             eeEE---------------------------------------EEECCCCCceEEecC---CeEEEeecccccceeEEe-
Confidence            2222                                       568899888887543   567777777666666666 


Q ss_pred             cccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEe
Q 022870          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG  270 (291)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  270 (291)
                             +|    .+.+.++. |+|...    .+++|++|-..+|||..  ++++..-..|+-+|++++|+|+ ..++.+
T Consensus       184 -------AH----DGiiL~~~-W~~~s~----lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~  244 (737)
T KOG1524|consen  184 -------AH----DGLVLSLS-WSTQSN----IIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLW  244 (737)
T ss_pred             -------cc----CcEEEEee-cCcccc----ceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeee
Confidence                   55    67899998 999843    99999999999999987  7777777778888888888877 444555


Q ss_pred             cCCCeEEE
Q 022870          271 GADQKIVL  278 (291)
Q Consensus       271 s~dg~i~v  278 (291)
                      |.+ ++|+
T Consensus       245 S~n-t~R~  251 (737)
T KOG1524|consen  245 SYN-TARF  251 (737)
T ss_pred             eee-eeee
Confidence            432 4443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.66  E-value=2.2e-13  Score=108.69  Aligned_cols=267  Identities=13%  Similarity=0.108  Sum_probs=151.6

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCC
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDG   86 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg   86 (291)
                      .+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.+++....   ..++++++  ||++++++. .++
T Consensus        26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~s~--DG~~~~v~n~~~~  100 (369)
T PF02239_consen   26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAVSP--DGKYVYVANYEPG  100 (369)
T ss_dssp             -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE----TTTEEEEEEEETT
T ss_pred             CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEEcC--CCCEEEEEecCCC
Confidence            356777775544445578999999999999999999999999999999887643   68999999  999988665 689


Q ss_pred             eEEEEECCCCCCCCCCccccccce-------EEE-EEeecccCcc-ceeccCCCCceeeecccCccc-cccCCCCCC---
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNS-------YHF-CKLSLVKEPY-ANAKQANEPKDCYEREVGETV-DTDSLCDSK---  153 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---  153 (291)
                      .+.++|.++.+.+.    .+....       ... ........+. ....-........+....... .........   
T Consensus       101 ~v~v~D~~tle~v~----~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D  176 (369)
T PF02239_consen  101 TVSVIDAETLEPVK----TIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHD  176 (369)
T ss_dssp             EEEEEETTT--EEE----EEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEE
T ss_pred             ceeEecccccccee----ecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccc
Confidence            99999999876543    222211       111 1112122221 112222333333343333211 111111111   


Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccC--------------------------------CCCC-CC
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG--------------------------------GSPN-FS  200 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~--------------------------------~~~~-~~  200 (291)
                      ..|+|++++++++. ..+..|-++|..+++.+..+.....+                                .... |.
T Consensus       177 ~~~dpdgry~~va~-~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d  255 (369)
T PF02239_consen  177 GGFDPDGRYFLVAA-NGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHD  255 (369)
T ss_dssp             EEE-TTSSEEEEEE-GGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred             cccCcccceeeecc-cccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccch
Confidence            78999999887643 34678999999887765544211000                                0000 00


Q ss_pred             CCc---------ceeeeeEEEecCCCCCCceEEEee----cCCCcEEEEEccCCCCceeeccccc-cceeEEEeecCCCe
Q 022870          201 SKG---------RGMCMAVQAYLPSKSQGFVNVLAG----YEDGSILVWDIRNPGIPLTAMKVHL-EPVLCLSIDESCNG  266 (291)
Q Consensus       201 ~~~---------~~~~~~~~~~~p~~~~g~~~l~~g----~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~  266 (291)
                      ...         .+...-+. -+|+   ++ ++++.    ...+.|.++|.++ .+.+..+.... ..+..+.|+++|+.
T Consensus       256 ~~~wkvv~~I~~~G~glFi~-thP~---s~-~vwvd~~~~~~~~~v~viD~~t-l~~~~~i~~~~~~~~~h~ef~~dG~~  329 (369)
T PF02239_consen  256 DYAWKVVKTIPTQGGGLFIK-THPD---SR-YVWVDTFLNPDADTVQVIDKKT-LKVVKTITPGPGKRVVHMEFNPDGKE  329 (369)
T ss_dssp             TTBTSEEEEEE-SSSS--EE---TT----S-EEEEE-TT-SSHT-EEEEECCG-TEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred             hhcCeEEEEEECCCCcceee-cCCC---Cc-cEEeeccCCCCCceEEEEECcC-cceeEEEeccCCCcEeccEECCCCCE
Confidence            000         01112233 4565   44 66666    5568999999998 56666665322 35889999999997


Q ss_pred             eEEecC--CCeEEEEEcCCCceeeee
Q 022870          267 GISGGA--DQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       267 l~s~s~--dg~i~vw~~~~~~~~~~~  290 (291)
                      +..+..  ++.|.+||..+.+++..+
T Consensus       330 v~vS~~~~~~~i~v~D~~Tl~~~~~i  355 (369)
T PF02239_consen  330 VWVSVWDGNGAIVVYDAKTLKEKKRI  355 (369)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             EEEEEecCCCEEEEEECCCcEEEEEE
Confidence            754443  347999999999988765

...

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.66  E-value=1.2e-13  Score=109.97  Aligned_cols=232  Identities=9%  Similarity=0.065  Sum_probs=132.5

Q ss_pred             EEecCCCeEEEEeCCC-Ce--EEEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCCeEEEEECCC-CCCCCCCcccccc
Q 022870           34 FAGTTGGELRIWDTVQ-HR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN-GGLSSNPSLTIKT  108 (291)
Q Consensus        34 ~s~~~dg~v~iwd~~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~~~~~~~  108 (291)
                      ++...|+.|.+||+.+ ++  .+..+...   .....++++|  ++++|++++ .++.|.+|+++. ++...  ......
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~~--~~~~~~   78 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALTF--AAESPL   78 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEecC---CCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceEE--eeeecC
Confidence            4447789999999964 33  44444432   2367899999  988887654 578999999973 22211  111111


Q ss_pred             -ceEEEEEeecccCccceeccCCCCceeeecccCccc---cccCCCCC--C-cccCCCCCcEEEEecCCcCeEEEEeCCC
Q 022870          109 -NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV---DTDSLCDS--K-DDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (291)
Q Consensus       109 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~-~~~~~~~~~~~~~~g~~d~~i~~wd~~~  181 (291)
                       .......+.+............+....++++.....   .....+..  . ++++|+++.+++ +...++.|.+||+.+
T Consensus        79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v-~~~~~~~v~v~d~~~  157 (330)
T PRK11028         79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWV-PCLKEDRIRLFTLSD  157 (330)
T ss_pred             CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEE-eeCCCCEEEEEEECC
Confidence             112223333333333333334555666766532211   11112211  1 789999987765 566689999999986


Q ss_pred             cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC-CCcEEEEEccCC-CC--ceeecccc------
Q 022870          182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNP-GI--PLTAMKVH------  251 (291)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-dg~i~vwd~~~~-~~--~~~~~~~h------  251 (291)
                      ...+.......     .. .........+. |+|+   |+ +++++++ ++.|.+||+... +.  .+..+..+      
T Consensus       158 ~g~l~~~~~~~-----~~-~~~g~~p~~~~-~~pd---g~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~  226 (330)
T PRK11028        158 DGHLVAQEPAE-----VT-TVEGAGPRHMV-FHPN---QQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD  226 (330)
T ss_pred             CCcccccCCCc-----ee-cCCCCCCceEE-ECCC---CC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence            43221110000     00 00011123454 9998   55 6666655 899999999741 22  23333211      


Q ss_pred             ccceeEEEeecCCCeeEEecC-CCeEEEEEcCCC
Q 022870          252 LEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHS  284 (291)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~-dg~i~vw~~~~~  284 (291)
                      ......+.++|++++|+++.. ++.|.+|+++..
T Consensus       227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        227 TRWAADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             CccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            123346889999999888754 789999999654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.64  E-value=6.8e-14  Score=115.04  Aligned_cols=231  Identities=13%  Similarity=0.058  Sum_probs=145.4

Q ss_pred             CCeEEEEeCCCC-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC--CCCccccccc--eEEE
Q 022870           39 GGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS--SNPSLTIKTN--SYHF  113 (291)
Q Consensus        39 dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~--~~~~  113 (291)
                      ++.+.+|++... .....+.. .  .+|.++.|+|. +.++++.|..+|+|.+||++.....  .........+  +...
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~-~--s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~  296 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLES-P--SEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA  296 (555)
T ss_pred             CceEEEEecCCCCCceEEEec-C--CceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence            357999999876 33333332 3  55999999996 6689999999999999999987652  1111111222  2222


Q ss_pred             EEeecccCc-cceeccCCCCceeeecccCcccccc----CCCC---------CC--cccCCCCCcEEEEecCCcCeEEEE
Q 022870          114 CKLSLVKEP-YANAKQANEPKDCYEREVGETVDTD----SLCD---------SK--DDVPAEGPKYMAVAGEQLSEVEIW  177 (291)
Q Consensus       114 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------~~--~~~~~~~~~~~~~~g~~d~~i~~w  177 (291)
                      ..+.....+ ........+....|+++........    ...|         ..  ++|.+...+.++ .|+.+|.|.--
T Consensus       297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi-VGTe~G~v~~~  375 (555)
T KOG1587|consen  297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI-VGTEEGKVYKG  375 (555)
T ss_pred             EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE-EEcCCcEEEEE
Confidence            333222222 2333444666677766544331111    1111         11  888888888777 47778988763


Q ss_pred             eCCCcce-e-eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccce
Q 022870          178 DLNTAER-C-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV  255 (291)
Q Consensus       178 d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v  255 (291)
                      +-...+. . ..++..      .+...+.+.+.++. ++|-..   ..+++++ |..+++|.......|+..+..+...|
T Consensus       376 ~r~g~~~~~~~~~~~~------~~~~~h~g~v~~v~-~nPF~~---k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v  444 (555)
T KOG1587|consen  376 CRKGYTPAPEVSYKGH------STFITHIGPVYAVS-RNPFYP---KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYV  444 (555)
T ss_pred             eccCCccccccccccc------ccccccCcceEeee-cCCCcc---ceeeeec-cceeEeccccCCCCcchhhhhcccee
Confidence            3222111 1 111200      11122466788887 888743   2555555 99999999883388999999889999


Q ss_pred             eEEEeecCCC-eeEEecCCCeEEEEEcCCCc
Q 022870          256 LCLSIDESCN-GGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       256 ~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~~  285 (291)
                      ++++|+|... .++++..||.|.+||+....
T Consensus       445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             eeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence            9999988654 56788889999999997543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=4.8e-13  Score=110.28  Aligned_cols=209  Identities=11%  Similarity=0.003  Sum_probs=130.9

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecC---CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeC
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR   84 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~   84 (291)
                      ...+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.  ..+...+|+|  ||+.|+ +.+.
T Consensus       192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~--g~~~~~~~SP--DG~~la~~~~~  266 (435)
T PRK05137        192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFP--GMTFAPRFSP--DGRKVVMSLSQ  266 (435)
T ss_pred             CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCC--CcccCcEECC--CCCEEEEEEec
Confidence            344567778889999999999998887653   468999999887654 333344  3378899999  998775 5566


Q ss_pred             CCe--EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCc
Q 022870           85 DGT--VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (291)
Q Consensus        85 dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (291)
                      ++.  |.+||+.+++...     +.......  .                                    ...|+|+|+.
T Consensus       267 ~g~~~Iy~~d~~~~~~~~-----Lt~~~~~~--~------------------------------------~~~~spDG~~  303 (435)
T PRK05137        267 GGNTDIYTMDLRSGTTTR-----LTDSPAID--T------------------------------------SPSYSPDGSQ  303 (435)
T ss_pred             CCCceEEEEECCCCceEE-----ccCCCCcc--C------------------------------------ceeEcCCCCE
Confidence            655  7777887664321     11110000  0                                    0459999988


Q ss_pred             EEEEecC-CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC-C--CcEEEEEc
Q 022870          163 YMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-D--GSILVWDI  238 (291)
Q Consensus       163 ~~~~~g~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-d--g~i~vwd~  238 (291)
                      +++++.. .+..|+++|+..++. ..+..        +    .+...... |+|+   |+ .|+.... .  ..|.+||+
T Consensus       304 i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~--------~----~~~~~~~~-~Spd---G~-~ia~~~~~~~~~~i~~~d~  365 (435)
T PRK05137        304 IVFESDRSGSPQLYVMNADGSNP-RRISF--------G----GGRYSTPV-WSPR---GD-LIAFTKQGGGQFSIGVMKP  365 (435)
T ss_pred             EEEEECCCCCCeEEEEECCCCCe-EEeec--------C----CCcccCeE-ECCC---CC-EEEEEEcCCCceEEEEEEC
Confidence            7764421 123688889876654 33331        1    11223344 9998   54 5554433 2  36888887


Q ss_pred             cCCCCceeeccccccceeEEEeecCCCeeEEecCC------CeEEEEEcCCCce
Q 022870          239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD------QKIVLYNLDHSTV  286 (291)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------g~i~vw~~~~~~~  286 (291)
                      .. + ....+.. ...+....|+|+|+.|+..+.+      ..+.+.|++.+..
T Consensus       366 ~~-~-~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        366 DG-S-GERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             CC-C-ceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            64 3 2333332 2356788999999988765442      3688888876554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.61  E-value=1.4e-13  Score=99.99  Aligned_cols=158  Identities=16%  Similarity=0.266  Sum_probs=102.6

Q ss_pred             eEEEEcCCCCEEEEecC----------CCeEEEEeCC-CCeEEEEEeeecCCcceEEEEEeecCCCCeEEE--EeCCCeE
Q 022870           22 TDVCFHQTKPILFAGTT----------GGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS--QGRDGTV   88 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~----------dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~dg~i   88 (291)
                      ..+.|+++|.+|+.-..          -|...+|.++ .+.....+..... .+|.+++|+|  +|+.|++  |..++.|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~-~~I~~~~WsP--~g~~favi~g~~~~~v   85 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE-GPIHDVAWSP--NGNEFAVIYGSMPAKV   85 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC-CceEEEEECc--CCCEEEEEEccCCccc
Confidence            45889999987765332          1345555552 2334444544332 4599999999  8888764  4467899


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe-
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA-  167 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (291)
                      .+||++...     +..+.......                                        +.|+|+|+.++++. 
T Consensus        86 ~lyd~~~~~-----i~~~~~~~~n~----------------------------------------i~wsP~G~~l~~~g~  120 (194)
T PF08662_consen   86 TLYDVKGKK-----IFSFGTQPRNT----------------------------------------ISWSPDGRFLVLAGF  120 (194)
T ss_pred             EEEcCcccE-----eEeecCCCceE----------------------------------------EEECCCCCEEEEEEc
Confidence            999997321     22333222111                                        55999998776532 


Q ss_pred             cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC------CCcEEEEEccCC
Q 022870          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE------DGSILVWDIRNP  241 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~------dg~i~vwd~~~~  241 (291)
                      +...|.|.+||+++.+.+.+.+         |     ..+..+. |+|+   |+ +|+++..      |+.++||+..  
T Consensus       121 ~n~~G~l~~wd~~~~~~i~~~~---------~-----~~~t~~~-WsPd---Gr-~~~ta~t~~r~~~dng~~Iw~~~--  179 (194)
T PF08662_consen  121 GNLNGDLEFWDVRKKKKISTFE---------H-----SDATDVE-WSPD---GR-YLATATTSPRLRVDNGFKIWSFQ--  179 (194)
T ss_pred             cCCCcEEEEEECCCCEEeeccc---------c-----CcEEEEE-EcCC---CC-EEEEEEeccceeccccEEEEEec--
Confidence            2335789999999888877665         1     2356666 9999   66 7776653      7889999986  


Q ss_pred             CCceeec
Q 022870          242 GIPLTAM  248 (291)
Q Consensus       242 ~~~~~~~  248 (291)
                      ++.+...
T Consensus       180 G~~l~~~  186 (194)
T PF08662_consen  180 GRLLYKK  186 (194)
T ss_pred             CeEeEec
Confidence            5555443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=4.5e-13  Score=111.29  Aligned_cols=170  Identities=16%  Similarity=0.249  Sum_probs=108.5

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC----CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      .|...++|.++||+++++|+|..||.|.+|.--.    ......+.-|.  ++|.+++|++  +|.+|++|+..|.+-+|
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~--~~V~~L~fS~--~G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH--DEVNSLSFSS--DGAYLLSGGREGVLVLW  278 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc--cccceeEEec--CCceEeecccceEEEEE
Confidence            4777899999999999999999999999996322    12334455566  4499999999  99999999999999999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (291)
                      .+++++...  +..+...-.+                                         +.++||+....++.+  |
T Consensus       279 q~~T~~kqf--LPRLgs~I~~-----------------------------------------i~vS~ds~~~sl~~~--D  313 (792)
T KOG1963|consen  279 QLETGKKQF--LPRLGSPILH-----------------------------------------IVVSPDSDLYSLVLE--D  313 (792)
T ss_pred             eecCCCccc--ccccCCeeEE-----------------------------------------EEEcCCCCeEEEEec--C
Confidence            999987322  2222222222                                         348889887665443  7


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      ..|.+....+.+...++........ .......+....+. ++|..  +  .++-.+..|.|.+||+.+
T Consensus       314 NqI~li~~~dl~~k~tIsgi~~~~~-~~k~~~~~l~t~~~-idpr~--~--~~vln~~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  314 NQIHLIKASDLEIKSTISGIKPPTP-STKTRPQSLTTGVS-IDPRT--N--SLVLNGHPGHVQFYDLYT  376 (792)
T ss_pred             ceEEEEeccchhhhhhccCccCCCc-cccccccccceeEE-EcCCC--C--ceeecCCCceEEEEeccc
Confidence            8999988766554443331000000 00111233444444 66631  1  455555556666666543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=4.8e-13  Score=110.16  Aligned_cols=206  Identities=10%  Similarity=0.025  Sum_probs=128.4

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecC---CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCC
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD   85 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d   85 (291)
                      ..+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++... +.....  ...+.+|+|  +|+.|+ +.+.+
T Consensus       195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g--~~~~~~~Sp--DG~~l~~~~s~~  269 (433)
T PRK04922        195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRG--INGAPSFSP--DGRRLALTLSRD  269 (433)
T ss_pred             CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCC--CccCceECC--CCCEEEEEEeCC
Confidence            34456667788999999999998887764   3479999998776543 322332  256889999  988775 55555


Q ss_pred             C--eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           86 G--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        86 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                      |  .|.+||+.+++...     +.......                                      ...+|+|+|+.+
T Consensus       270 g~~~Iy~~d~~~g~~~~-----lt~~~~~~--------------------------------------~~~~~spDG~~l  306 (433)
T PRK04922        270 GNPEIYVMDLGSRQLTR-----LTNHFGID--------------------------------------TEPTWAPDGKSI  306 (433)
T ss_pred             CCceEEEEECCCCCeEE-----CccCCCCc--------------------------------------cceEECCCCCEE
Confidence            5  59999998765321     11100000                                      004599999877


Q ss_pred             EEEecCCcCe--EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCC--cEEEEEc
Q 022870          164 MAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDI  238 (291)
Q Consensus       164 ~~~~g~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg--~i~vwd~  238 (291)
                      +++ ...+|.  |+++|+.+++.. .+...      +      ....... |+|+   |+ +|+..+ .++  .|.+||+
T Consensus       307 ~f~-sd~~g~~~iy~~dl~~g~~~-~lt~~------g------~~~~~~~-~SpD---G~-~Ia~~~~~~~~~~I~v~d~  367 (433)
T PRK04922        307 YFT-SDRGGRPQIYRVAASGGSAE-RLTFQ------G------NYNARAS-VSPD---GK-KIAMVHGSGGQYRIAVMDL  367 (433)
T ss_pred             EEE-ECCCCCceEEEEECCCCCeE-EeecC------C------CCccCEE-ECCC---CC-EEEEEECCCCceeEEEEEC
Confidence            764 333444  777777766532 22210      1      1122344 9998   54 555443 332  6999999


Q ss_pred             cCCCCceeeccccccceeEEEeecCCCeeEEecCC---CeEEEEEcCCCc
Q 022870          239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHST  285 (291)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vw~~~~~~  285 (291)
                      .+ ++.. .+. +........|+|+|++|+..+.+   +.|.+++++.+.
T Consensus       368 ~~-g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        368 ST-GSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             CC-CCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            86 4443 443 22345567999999988776653   468888886543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.60  E-value=2.4e-14  Score=112.83  Aligned_cols=189  Identities=12%  Similarity=0.135  Sum_probs=126.7

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +....+.+|.+.|.|-.|+|||.-|+|++.||.|++|. .+|....++.-..  .+|.|++|.|  +.+.++-+.. +.+
T Consensus        95 rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~--~~v~c~~W~p--~S~~vl~c~g-~h~  168 (737)
T KOG1524|consen   95 RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNE--ESIRCARWAP--NSNSIVFCQG-GHI  168 (737)
T ss_pred             hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcC--ceeEEEEECC--CCCceEEecC-CeE
Confidence            44556788999999999999999999999999999999 5676655554344  5599999999  6555444333 345


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      .|=-+.....    +...+.+......                                      +.|++..+ +++ +|
T Consensus       169 ~IKpL~~n~k----~i~WkAHDGiiL~--------------------------------------~~W~~~s~-lI~-sg  204 (737)
T KOG1524|consen  169 SIKPLAANSK----IIRWRAHDGLVLS--------------------------------------LSWSTQSN-IIA-SG  204 (737)
T ss_pred             EEeecccccc----eeEEeccCcEEEE--------------------------------------eecCcccc-cee-ec
Confidence            4444433321    2223332222111                                      44788765 444 78


Q ss_pred             CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      ++|-..++||... +.+..-.        .|    ...+++++ |+|+ .    .++.++.+ +++            .-
T Consensus       205 GED~kfKvWD~~G-~~Lf~S~--------~~----ey~ITSva-~npd-~----~~~v~S~n-t~R------------~~  252 (737)
T KOG1524|consen  205 GEDFRFKIWDAQG-ANLFTSA--------AE----EYAITSVA-FNPE-K----DYLLWSYN-TAR------------FS  252 (737)
T ss_pred             CCceeEEeecccC-cccccCC--------hh----ccceeeee-eccc-c----ceeeeeee-eee------------ec
Confidence            8899999999864 4444333        23    45678887 9998 2    44444432 233            11


Q ss_pred             cccccceeEEEeecCCCeeEEecCCCeEEEE
Q 022870          249 KVHLEPVLCLSIDESCNGGISGGADQKIVLY  279 (291)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  279 (291)
                      +...+.|..++|++||..++.|...|.+.+=
T Consensus       253 ~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  253 SPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            2346789999999999999999999987663

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.5e-13  Score=103.36  Aligned_cols=198  Identities=14%  Similarity=0.127  Sum_probs=129.6

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      +-.+..++|++.-..+|++..|-.|++||-.. ++...++... ...|+|++|-|. .+..|+.|+..| |.+|......
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~s-QrnvtclawRPl-saselavgCr~g-IciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVS-QRNVTCLAWRPL-SASELAVGCRAG-ICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchh-hcceeEEEeccC-Ccceeeeeecce-eEEEEcCccc
Confidence            45688899999777889999999999999655 5555555332 256999999995 346777777754 8899876432


Q ss_pred             CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC---cccCCCCCcEEEEecCCcCeE
Q 022870           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEV  174 (291)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i  174 (291)
                      ....++.-+....                                ......++|..   +.|++||..++ .++-.|..|
T Consensus       174 n~~r~~~~~s~~~--------------------------------~qvl~~pgh~pVtsmqwn~dgt~l~-tAS~gsssi  220 (445)
T KOG2139|consen  174 NANRNIRMMSTHH--------------------------------LQVLQDPGHNPVTSMQWNEDGTILV-TASFGSSSI  220 (445)
T ss_pred             ccccccccccccc--------------------------------hhheeCCCCceeeEEEEcCCCCEEe-ecccCcceE
Confidence            2111000000000                                00111222222   77999986554 456668899


Q ss_pred             EEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccc
Q 022870          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (291)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~  254 (291)
                      .|||..++..+.....            ..+-+.-+. |+|++   . +|++++-|+..++|+..+.-....-.. ..+.
T Consensus       221 ~iWdpdtg~~~pL~~~------------glgg~slLk-wSPdg---d-~lfaAt~davfrlw~e~q~wt~erw~l-gsgr  282 (445)
T KOG2139|consen  221 MIWDPDTGQKIPLIPK------------GLGGFSLLK-WSPDG---D-VLFAATCDAVFRLWQENQSWTKERWIL-GSGR  282 (445)
T ss_pred             EEEcCCCCCccccccc------------CCCceeeEE-EcCCC---C-EEEEecccceeeeehhcccceecceec-cCCc
Confidence            9999999876544321            123344555 99994   4 899999999999997665222222222 3569


Q ss_pred             eeEEEeecCCCeeEEe
Q 022870          255 VLCLSIDESCNGGISG  270 (291)
Q Consensus       255 v~~~~~~~~~~~l~s~  270 (291)
                      |...+|+|.|.+|.-.
T Consensus       283 vqtacWspcGsfLLf~  298 (445)
T KOG2139|consen  283 VQTACWSPCGSFLLFA  298 (445)
T ss_pred             eeeeeecCCCCEEEEE
Confidence            9999999999987543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=1.5e-12  Score=106.80  Aligned_cols=204  Identities=12%  Similarity=0.038  Sum_probs=124.2

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEec---CCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEE-eCCC-
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGT---TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDG-   86 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg-   86 (291)
                      +.+..+...+...+|+|||+.|+..+   .+..+.+||+.+++..... ...  ..+....|+|  ||+.|+.. +.+| 
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~--~~~~~~~~SP--DG~~La~~~~~~g~  266 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFP--RHNGAPAFSP--DGSKLAFALSKTGS  266 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCC--CCcCCeEECC--CCCEEEEEEcCCCC
Confidence            33445667899999999999887643   3457999999887644322 222  2256789999  99888754 4455 


Q ss_pred             -eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870           87 -TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (291)
Q Consensus        87 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                       .|.+||+.+++...     +.......                                      ....|+|+|+.+++
T Consensus       267 ~~I~~~d~~tg~~~~-----lt~~~~~~--------------------------------------~~~~wSPDG~~I~f  303 (429)
T PRK03629        267 LNLYVMDLASGQIRQ-----VTDGRSNN--------------------------------------TEPTWFPDSQNLAY  303 (429)
T ss_pred             cEEEEEECCCCCEEE-----ccCCCCCc--------------------------------------CceEECCCCCEEEE
Confidence             58889998764321     11000000                                      00459999988766


Q ss_pred             EecCCcCe--EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe-ecCC--CcEEEEEccC
Q 022870          166 VAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYED--GSILVWDIRN  240 (291)
Q Consensus       166 ~~g~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~~d--g~i~vwd~~~  240 (291)
                      ++ ..++.  |.++|+.+++. ..+..        .    ........ |+|+   |+ +|+. +..+  ..|++||+.+
T Consensus       304 ~s-~~~g~~~Iy~~d~~~g~~-~~lt~--------~----~~~~~~~~-~SpD---G~-~Ia~~~~~~g~~~I~~~dl~~  364 (429)
T PRK03629        304 TS-DQAGRPQVYKVNINGGAP-QRITW--------E----GSQNQDAD-VSSD---GK-FMVMVSSNGGQQHIAKQDLAT  364 (429)
T ss_pred             Ee-CCCCCceEEEEECCCCCe-EEeec--------C----CCCccCEE-ECCC---CC-EEEEEEccCCCceEEEEECCC
Confidence            43 33444  55557766543 23321        1    11122344 9998   55 5544 4333  3588899986


Q ss_pred             CCCceeeccccccceeEEEeecCCCeeEEecCCCe---EEEEEcCCCc
Q 022870          241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQK---IVLYNLDHST  285 (291)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~---i~vw~~~~~~  285 (291)
                       +. ...+.. ........|+|||++|+.++.++.   +.+++++.+.
T Consensus       365 -g~-~~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~  409 (429)
T PRK03629        365 -GG-VQVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF  409 (429)
T ss_pred             -CC-eEEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence             43 333332 122346789999999998887764   7778876543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2e-13  Score=112.15  Aligned_cols=179  Identities=15%  Similarity=0.121  Sum_probs=113.5

Q ss_pred             CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC---CeEEEEECCCCCCCCCCccccccceEEEEE
Q 022870           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCK  115 (291)
Q Consensus        39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
                      +..|.+||..... ...+..+.  ..+.+.+|+|  +|+.|+.++.+   ..|++||+.+++...  +........  . 
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~--~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~~~~--l~~~~g~~~--~-  252 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSS--QPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGARKV--VASFRGHNG--A-  252 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCC--CccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCceEE--EecCCCccC--c-
Confidence            5789999986544 45555555  3499999999  99999877654   379999998764211  111110000  0 


Q ss_pred             eecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE--EeCCCcceeeEeccccc
Q 022870          116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI--WDLNTAERCTRLHQNSC  193 (291)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~--wd~~~~~~~~~~~~~~~  193 (291)
                                                            .+|+|+|+.+++ +.+.+|.+.|  ||+.+++. ..+.    
T Consensus       253 --------------------------------------~~wSPDG~~La~-~~~~~g~~~Iy~~d~~~~~~-~~lt----  288 (429)
T PRK01742        253 --------------------------------------PAFSPDGSRLAF-ASSKDGVLNIYVMGANGGTP-SQLT----  288 (429)
T ss_pred             --------------------------------------eeECCCCCEEEE-EEecCCcEEEEEEECCCCCe-Eeec----
Confidence                                                  559999987765 3444676555  56665543 3343    


Q ss_pred             CCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC
Q 022870          194 GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD  273 (291)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  273 (291)
                          .+    ........ |+|+   |+.+++++..+|..+||++...+.....+ .+..  ....|+|+|++|+..+.+
T Consensus       289 ----~~----~~~~~~~~-wSpD---G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~  353 (429)
T PRK01742        289 ----SG----AGNNTEPS-WSPD---GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD  353 (429)
T ss_pred             ----cC----CCCcCCEE-ECCC---CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC
Confidence                22    12334455 9998   55344555567888888876433333333 3433  457899999999888776


Q ss_pred             CeEEEEEcCCCcee
Q 022870          274 QKIVLYNLDHSTVS  287 (291)
Q Consensus       274 g~i~vw~~~~~~~~  287 (291)
                      + +.+||+.+++..
T Consensus       354 ~-i~~~Dl~~g~~~  366 (429)
T PRK01742        354 N-VVKQDLTSGSTE  366 (429)
T ss_pred             C-EEEEECCCCCeE
Confidence            5 556999887643

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.58  E-value=3.9e-13  Score=99.52  Aligned_cols=213  Identities=14%  Similarity=0.095  Sum_probs=142.3

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeC-CCC--eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~-~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      .++.++|..|...|++++|+|..+.|++++.|..-.+|.. ..+  +....+..+..+  .+++.|+|  .++.|++|+.
T Consensus        45 w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrA--At~V~WsP--~enkFAVgSg  120 (361)
T KOG1523|consen   45 WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRA--ATCVKWSP--KENKFAVGSG  120 (361)
T ss_pred             ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccc--eeeEeecC--cCceEEeccC
Confidence            4788999999999999999999999999999999999998 333  334444556654  99999999  8899999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      ...|.+|-++...--.  +...-..+......+                                    ++|+|++-  +
T Consensus       121 ar~isVcy~E~ENdWW--VsKhikkPirStv~s------------------------------------ldWhpnnV--L  160 (361)
T KOG1523|consen  121 ARLISVCYYEQENDWW--VSKHIKKPIRSTVTS------------------------------------LDWHPNNV--L  160 (361)
T ss_pred             ccEEEEEEEeccccee--hhhhhCCccccceee------------------------------------eeccCCcc--e
Confidence            9999999887654221  000000010001011                                    55888763  4


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCC----------CCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP----------NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (291)
                      +++|+.|+..+++..--    +.+.....++..          .......+.+..+. |+|++.    .|+-.+.|..+.
T Consensus       161 laaGs~D~k~rVfSayI----K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~-fs~sG~----~lawv~Hds~v~  231 (361)
T KOG1523|consen  161 LAAGSTDGKCRVFSAYI----KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL-FSPSGN----RLAWVGHDSTVS  231 (361)
T ss_pred             ecccccCcceeEEEEee----eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE-eCCCCC----EeeEecCCCceE
Confidence            44788899999996421    111100000000          01113467788887 999844    899999999999


Q ss_pred             EEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC
Q 022870          235 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ  274 (291)
Q Consensus       235 vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  274 (291)
                      +-|...+.+.+..+..-.-+..++.|-.+. .++.++.|.
T Consensus       232 ~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~c  270 (361)
T KOG1523|consen  232 FVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYDC  270 (361)
T ss_pred             EeecCCCchhccchhhccCCceeeEeecCC-ceeecCCCC
Confidence            999887554555555445788888883332 355555663

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2e-12  Score=106.22  Aligned_cols=202  Identities=11%  Similarity=0.061  Sum_probs=122.3

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCC---CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCC
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG   86 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg   86 (291)
                      ...+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....  ..+...+|+|  ||+.|+ +.+.+|
T Consensus       188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~--g~~~~~~~SP--DG~~la~~~~~~g  262 (427)
T PRK02889        188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFK--GSNSAPAWSP--DGRTLAVALSRDG  262 (427)
T ss_pred             ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCC--CCccceEECC--CCCEEEEEEccCC
Confidence            34455678889999999999988876542   469999998886543 32222  2367899999  998876 567788


Q ss_pred             eEEEEECC--CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           87 TVKCWDIE--NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        87 ~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      ...+|.++  .+...     .+.......                                      ....|+|||+.++
T Consensus       263 ~~~Iy~~d~~~~~~~-----~lt~~~~~~--------------------------------------~~~~wSpDG~~l~  299 (427)
T PRK02889        263 NSQIYTVNADGSGLR-----RLTQSSGID--------------------------------------TEPFFSPDGRSIY  299 (427)
T ss_pred             CceEEEEECCCCCcE-----ECCCCCCCC--------------------------------------cCeEEcCCCCEEE
Confidence            77777654  33211     111100000                                      0044999998877


Q ss_pred             EEecCCcCeEEEEeC--CCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC---cEEEEEcc
Q 022870          165 AVAGEQLSEVEIWDL--NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIR  239 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg---~i~vwd~~  239 (291)
                      ++ +..++...+|.+  .+++. ..+...      +      ....... |+|+   |+ +|+..+.++   .|++||+.
T Consensus       300 f~-s~~~g~~~Iy~~~~~~g~~-~~lt~~------g------~~~~~~~-~SpD---G~-~Ia~~s~~~g~~~I~v~d~~  360 (427)
T PRK02889        300 FT-SDRGGAPQIYRMPASGGAA-QRVTFT------G------SYNTSPR-ISPD---GK-LLAYISRVGGAFKLYVQDLA  360 (427)
T ss_pred             EE-ecCCCCcEEEEEECCCCce-EEEecC------C------CCcCceE-ECCC---CC-EEEEEEccCCcEEEEEEECC
Confidence            64 434455566654  44432 222210      1      1122344 9998   55 666555443   69999998


Q ss_pred             CCCCceeeccccccceeEEEeecCCCeeEEecCCC---eEEEEEcC
Q 022870          240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLD  282 (291)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~vw~~~  282 (291)
                      + ++.. .+.. ........|+|+|+.|+..+.++   .+.+-+++
T Consensus       361 ~-g~~~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~  403 (427)
T PRK02889        361 T-GQVT-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD  403 (427)
T ss_pred             C-CCeE-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence            7 4433 3332 23346789999999988776543   35555553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.57  E-value=2.8e-12  Score=102.37  Aligned_cols=200  Identities=17%  Similarity=0.113  Sum_probs=129.7

Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEE
Q 022870           33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH  112 (291)
Q Consensus        33 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  112 (291)
                      +++-..+|.|.+.|..+.+.+..+.....  .-..+.|+|  ||+++++++.||.|.++|+.+.+...    +++.....
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~--~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~----~i~~G~~~   80 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGA--PHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVA----TIKVGGNP   80 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STT--EEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEE----EEE-SSEE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCC--ceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEE----EEecCCCc
Confidence            35667789999999999999999887542  234577899  99999999999999999999987543    33333322


Q ss_pred             EEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccc
Q 022870          113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS  192 (291)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~  192 (291)
                      ..                                       ++++++|+++++ +...++.+.++|.++.+.++.+....
T Consensus        81 ~~---------------------------------------i~~s~DG~~~~v-~n~~~~~v~v~D~~tle~v~~I~~~~  120 (369)
T PF02239_consen   81 RG---------------------------------------IAVSPDGKYVYV-ANYEPGTVSVIDAETLEPVKTIPTGG  120 (369)
T ss_dssp             EE---------------------------------------EEE--TTTEEEE-EEEETTEEEEEETTT--EEEEEE--E
T ss_pred             ce---------------------------------------EEEcCCCCEEEE-EecCCCceeEeccccccceeeccccc
Confidence            22                                       568999987765 55568999999999999998876311


Q ss_pred             cCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEE-ec
Q 022870          193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS-GG  271 (291)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s  271 (291)
                      ..     .......+.++. .+|..   ..++++--+.+.|.+.|..+...+......-........|+|++++++. ..
T Consensus       121 ~~-----~~~~~~Rv~aIv-~s~~~---~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  121 MP-----VDGPESRVAAIV-ASPGR---PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             E------TTTS---EEEEE-E-SSS---SEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred             cc-----ccccCCCceeEE-ecCCC---CEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc
Confidence            00     000223445554 56652   2256666667999999988743333233333556788999999998755 45


Q ss_pred             CCCeEEEEEcCCCceeee
Q 022870          272 ADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       272 ~dg~i~vw~~~~~~~~~~  289 (291)
                      .++.|-++|..+++++..
T Consensus       192 ~sn~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  192 GSNKIAVIDTKTGKLVAL  209 (369)
T ss_dssp             GGTEEEEEETTTTEEEEE
T ss_pred             ccceeEEEeeccceEEEE
Confidence            567999999999877643

...

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1.8e-12  Score=103.29  Aligned_cols=251  Identities=15%  Similarity=0.128  Sum_probs=155.1

Q ss_pred             CccceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870           17 HRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~   95 (291)
                      |...-+.+..+|||+|+ |+|...-.|++||+.+-.  ..++-|...+.|.-.-.+.  |-..++--..|.+|.+..--.
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsD--D~SK~v~L~~DR~IefHak~G  125 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAKYG  125 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEecc--chhhheEeecCceeeehhhcC
Confidence            77788999999999986 788889999999987543  3456666655566666666  656677777788887654332


Q ss_pred             CCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC---cccCCCCCcEEEEecCCcC
Q 022870           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~  172 (291)
                      ....    ..++......  .--.++........+..+..+++..++...........   +..++... +++ +|..+|
T Consensus       126 ~hy~----~RIP~~GRDm--~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla-~Gt~~g  197 (703)
T KOG2321|consen  126 RHYR----TRIPKFGRDM--KYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLA-CGTEDG  197 (703)
T ss_pred             eeee----eecCcCCccc--cccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc-eEE-ecccCc
Confidence            1110    0111110000  00011122333344444555555555533322111111   55666543 444 788899


Q ss_pred             eEEEEeCCCcceeeEecccccCCCCCCCC-CcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec-cc
Q 022870          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KV  250 (291)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~  250 (291)
                      .|..||.+....+..+......+  .|+. .....++++. |+.+   |- .+++|+.+|.|.|||++. .+++..- .+
T Consensus       198 ~VEfwDpR~ksrv~~l~~~~~v~--s~pg~~~~~svTal~-F~d~---gL-~~aVGts~G~v~iyDLRa-~~pl~~kdh~  269 (703)
T KOG2321|consen  198 VVEFWDPRDKSRVGTLDAASSVN--SHPGGDAAPSVTALK-FRDD---GL-HVAVGTSTGSVLIYDLRA-SKPLLVKDHG  269 (703)
T ss_pred             eEEEecchhhhhheeeecccccC--CCccccccCcceEEE-ecCC---ce-eEEeeccCCcEEEEEccc-CCceeecccC
Confidence            99999999988877776432111  1111 1233478887 9876   54 899999999999999998 6665443 33


Q ss_pred             cccceeEEEeecC--CCeeEEecCCCeEEEEEcCCCceee
Q 022870          251 HLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       251 h~~~v~~~~~~~~--~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      ..-+|..+.|-+.  ++.|+|. ....++|||-.+|+..-
T Consensus       270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~a  308 (703)
T KOG2321|consen  270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMA  308 (703)
T ss_pred             CccceeeecccccCCCceEEec-chHHhhhcccccCCcee
Confidence            4568999999443  4556665 35689999999887653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.54  E-value=1.1e-14  Score=112.75  Aligned_cols=191  Identities=16%  Similarity=0.222  Sum_probs=142.2

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      ...|.++.|..+.+++|.+- ...+.||| ..|..++.++.+   .+|..+.|.|  -.-+|++++..|.++.-|+.+++
T Consensus       170 ~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~---~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~Gk  242 (545)
T KOG1272|consen  170 METVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH---IRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGK  242 (545)
T ss_pred             hhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc---Cchhhhcccc--hhheeeecccCCceEEEeechhh
Confidence            45688888888887888765 46799999 678888888877   4599999999  64567788999999999999998


Q ss_pred             CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEE
Q 022870           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (291)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~w  177 (291)
                      .+.    .+.........                                      ++-+|-+.  ++-.|...|+|.+|
T Consensus       243 lVa----~~~t~~G~~~v--------------------------------------m~qNP~Na--Vih~GhsnGtVSlW  278 (545)
T KOG1272|consen  243 LVA----SIRTGAGRTDV--------------------------------------MKQNPYNA--VIHLGHSNGTVSLW  278 (545)
T ss_pred             hhH----HHHccCCccch--------------------------------------hhcCCccc--eEEEcCCCceEEec
Confidence            755    33322221111                                      33555543  33467789999999


Q ss_pred             eCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeE
Q 022870          178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC  257 (291)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~  257 (291)
                      ...+.+++..+.        .|    .+.+.+++ +.+.   |+ |++|.+.|..++|||+++ ...+.++.. ..+...
T Consensus       279 SP~skePLvKiL--------cH----~g~V~siA-v~~~---G~-YMaTtG~Dr~~kIWDlR~-~~ql~t~~t-p~~a~~  339 (545)
T KOG1272|consen  279 SPNSKEPLVKIL--------CH----RGPVSSIA-VDRG---GR-YMATTGLDRKVKIWDLRN-FYQLHTYRT-PHPASN  339 (545)
T ss_pred             CCCCcchHHHHH--------hc----CCCcceEE-ECCC---Cc-EEeecccccceeEeeecc-ccccceeec-CCCccc
Confidence            999999988887        55    55677776 9988   66 999999999999999998 444444443 356778


Q ss_pred             EEeecCCCeeEEecCCCeEEEEE
Q 022870          258 LSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       258 ~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      +++|..|.  ++.|....|.||.
T Consensus       340 ls~Sqkgl--LA~~~G~~v~iw~  360 (545)
T KOG1272|consen  340 LSLSQKGL--LALSYGDHVQIWK  360 (545)
T ss_pred             cccccccc--eeeecCCeeeeeh
Confidence            89998875  3344455799995

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=4.3e-12  Score=95.73  Aligned_cols=202  Identities=14%  Similarity=0.182  Sum_probs=125.1

Q ss_pred             CccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCC----eE--------EEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           17 HRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH----RT--------VSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        17 h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~----~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      -...|+|++|-| .+..|+.|+..| |.+|.....    ..        ...++ +.+..+|++++|++  ||..+++++
T Consensus       139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~-~pgh~pVtsmqwn~--dgt~l~tAS  214 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQ-DPGHNPVTSMQWNE--DGTILVTAS  214 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhhee-CCCCceeeEEEEcC--CCCEEeecc
Confidence            356799999999 556788888765 889986431    11        11122 22226799999999  999999887


Q ss_pred             C-CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCc
Q 022870           84 R-DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (291)
Q Consensus        84 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (291)
                      . |..|.|||..++....  +....... ...                                       +.|+||+..
T Consensus       215 ~gsssi~iWdpdtg~~~p--L~~~glgg-~sl---------------------------------------LkwSPdgd~  252 (445)
T KOG2139|consen  215 FGSSSIMIWDPDTGQKIP--LIPKGLGG-FSL---------------------------------------LKWSPDGDV  252 (445)
T ss_pred             cCcceEEEEcCCCCCccc--ccccCCCc-eee---------------------------------------EEEcCCCCE
Confidence            5 6789999999987643  22111111 111                                       559999999


Q ss_pred             EEEEecCCcCeEEEEeCC-CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          163 YMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                      +++++  -|+..++|... +....+...             ..+.+.... |+|.   |..+|++.+..-.|+-....  
T Consensus       253 lfaAt--~davfrlw~e~q~wt~erw~l-------------gsgrvqtac-Wspc---GsfLLf~~sgsp~lysl~f~--  311 (445)
T KOG2139|consen  253 LFAAT--CDAVFRLWQENQSWTKERWIL-------------GSGRVQTAC-WSPC---GSFLLFACSGSPRLYSLTFD--  311 (445)
T ss_pred             EEEec--ccceeeeehhcccceecceec-------------cCCceeeee-ecCC---CCEEEEEEcCCceEEEEeec--
Confidence            88654  47999999544 333333222             123455554 9998   55466666655444333222  


Q ss_pred             CCc--------------eeecc------c---cccceeEEEeecCCCeeEEecCC--------CeEEEEEcCCCc
Q 022870          242 GIP--------------LTAMK------V---HLEPVLCLSIDESCNGGISGGAD--------QKIVLYNLDHST  285 (291)
Q Consensus       242 ~~~--------------~~~~~------~---h~~~v~~~~~~~~~~~l~s~s~d--------g~i~vw~~~~~~  285 (291)
                      +++              +..+.      +   -.+++.+++|+|.|.+||+.=..        +.|.+||.+..-
T Consensus       312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp  386 (445)
T KOG2139|consen  312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP  386 (445)
T ss_pred             CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence            111              11111      1   13578899999999999876443        336667766543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=9e-14  Score=123.39  Aligned_cols=201  Identities=16%  Similarity=0.306  Sum_probs=148.9

Q ss_pred             ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~   93 (291)
                      ++.|-..|.++.=+|...+.+||+.||.|++|....++.+..++.... ..|+.+.|+.  .|+.+..+..||.+.+|..
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~--qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH--QGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcc--cCCceeeeccCCceeeccc
Confidence            444667789999999888999999999999999999988888876554 6799999999  9999999999999999998


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec--CCc
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG--EQL  171 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~d  171 (291)
                      ..     ++....+.+......+.+.                                      .   .+++.+|  +.+
T Consensus      2281 ~p-----k~~~s~qchnk~~~Df~Fi--------------------------------------~---s~~~tag~s~d~ 2314 (2439)
T KOG1064|consen 2281 SP-----KPYTSWQCHNKALSDFRFI--------------------------------------G---SLLATAGRSSDN 2314 (2439)
T ss_pred             CC-----cceeccccCCccccceeee--------------------------------------e---hhhhccccCCCC
Confidence            83     2333444444333322221                                      1   2233233  347


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (291)
                      +.+.+||..-.....-+..       .|    .+..++++ |.|...    .|++|+.+|.|++||++. .+..+.++. 
T Consensus      2315 ~n~~lwDtl~~~~~s~v~~-------~H----~~gaT~l~-~~P~~q----llisggr~G~v~l~D~rq-rql~h~~~~- 2376 (2439)
T KOG1064|consen 2315 RNVCLWDTLLPPMNSLVHT-------CH----DGGATVLA-YAPKHQ----LLISGGRKGEVCLFDIRQ-RQLRHTFQA- 2376 (2439)
T ss_pred             CcccchhcccCcccceeee-------ec----CCCceEEE-EcCcce----EEEecCCcCcEEEeehHH-HHHHHHhhh-
Confidence            8899999764322211111       44    33456665 999733    999999999999999998 777777765 


Q ss_pred             ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                              ++ ...++++|+..|.|+||++....+++++
T Consensus      2377 --------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2377 --------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             --------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence                    55 5568999999999999999998887764

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.51  E-value=9.6e-13  Score=103.93  Aligned_cols=163  Identities=17%  Similarity=0.292  Sum_probs=114.4

Q ss_pred             ccceeEEEEcC-CCCEEEEecCCCeEEEEeCCC--------------CeEE--EEEe----------eecCCcceEEEEE
Q 022870           18 RASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ--------------HRTV--SSSW----------VHSAAHGIVSVAT   70 (291)
Q Consensus        18 ~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~--------------~~~~--~~~~----------~~~~~~~v~~~~~   70 (291)
                      +..|+|+.|-| +...++.+-.+|.+.++|.+-              +...  .+-+          -+..+.+|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            37899999999 555677778899999997532              1111  1111          1122245889999


Q ss_pred             eecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccce-EEEEEeecccCccceeccCCCCceeeecccCccccccCC
Q 022870           71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL  149 (291)
Q Consensus        71 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (291)
                      +|  ||.+|++.+.||.+||+|..+.++..    .++..- ...|                                   
T Consensus       299 S~--DG~~LA~VSqDGfLRvF~fdt~eLlg----~mkSYFGGLLC-----------------------------------  337 (636)
T KOG2394|consen  299 SP--DGKYLATVSQDGFLRIFDFDTQELLG----VMKSYFGGLLC-----------------------------------  337 (636)
T ss_pred             cC--CCceEEEEecCceEEEeeccHHHHHH----HHHhhccceEE-----------------------------------
Confidence            99  99999999999999999999876543    222221 1222                                   


Q ss_pred             CCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC-------------
Q 022870          150 CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS-------------  216 (291)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------  216 (291)
                          ++|+|||++++  +|++|.-|.||.+...+.+..-+        +|    +.++..++ |.|.             
T Consensus       338 ----vcWSPDGKyIv--tGGEDDLVtVwSf~erRVVARGq--------GH----kSWVs~Va-FDpytt~~ee~~~~~~~  398 (636)
T KOG2394|consen  338 ----VCWSPDGKYIV--TGGEDDLVTVWSFEERRVVARGQ--------GH----KSWVSVVA-FDPYTTSTEEWNNFSGM  398 (636)
T ss_pred             ----EEEcCCccEEE--ecCCcceEEEEEeccceEEEecc--------cc----ccceeeEe-ecccccccccccccccc
Confidence                66999998766  78889999999999888777665        56    44555554 6631             


Q ss_pred             ------------------C-CCC------------ceEEEeecCCCcEEEEEccC
Q 022870          217 ------------------K-SQG------------FVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       217 ------------------~-~~g------------~~~l~~g~~dg~i~vwd~~~  240 (291)
                                        + .++            .+.|.+.+.|..+.+||+..
T Consensus       399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte  453 (636)
T KOG2394|consen  399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE  453 (636)
T ss_pred             cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence                              0 001            24688899999999999974

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.49  E-value=2.1e-11  Score=100.48  Aligned_cols=203  Identities=14%  Similarity=0.088  Sum_probs=125.0

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCC---CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCC
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG   86 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg   86 (291)
                      .+.+..+...+...+|+|+|++|+.+..+   ..|++||+.+++.... ..+.  ..+.+++|+|  +++.|+ +.+.++
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~--~~~~~~~~sp--Dg~~l~~~~~~~~  256 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFP--GMNGAPAFSP--DGSKLAVSLSKDG  256 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCC--CCccceEECC--CCCEEEEEECCCC
Confidence            44555567778999999999999876543   4799999988765433 2333  2367899999  988776 445444


Q ss_pred             --eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           87 --TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        87 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                        .|.+||+.++....     +......      .                                ....|+|+|+.++
T Consensus       257 ~~~i~~~d~~~~~~~~-----l~~~~~~------~--------------------------------~~~~~s~dg~~l~  293 (417)
T TIGR02800       257 NPDIYVMDLDGKQLTR-----LTNGPGI------D--------------------------------TEPSWSPDGKSIA  293 (417)
T ss_pred             CccEEEEECCCCCEEE-----CCCCCCC------C--------------------------------CCEEECCCCCEEE
Confidence              58888887664321     1000000      0                                0034889998776


Q ss_pred             EEecCCcC--eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC---cEEEEEcc
Q 022870          165 AVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIR  239 (291)
Q Consensus       165 ~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg---~i~vwd~~  239 (291)
                      +++ ..++  .|.++|+.+++.. .+..        +    ........ |+|+   |+ +++.++.++   .|.+||+.
T Consensus       294 ~~s-~~~g~~~iy~~d~~~~~~~-~l~~--------~----~~~~~~~~-~spd---g~-~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       294 FTS-DRGGSPQIYMMDADGGEVR-RLTF--------R----GGYNASPS-WSPD---GD-LIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             EEE-CCCCCceEEEEECCCCCEE-Eeec--------C----CCCccCeE-ECCC---CC-EEEEEEccCCceEEEEEeCC
Confidence            543 3233  5888888776543 2321        1    11233444 9998   44 666666554   78899988


Q ss_pred             CCCCceeeccccccceeEEEeecCCCeeEEecCCC---eEEEEEcCC
Q 022870          240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLDH  283 (291)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~vw~~~~  283 (291)
                      + +. ...+... .......|+|++++|+..+.++   .+.+.+.+.
T Consensus       355 ~-~~-~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       355 G-GG-ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             C-CC-eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            6 33 2333322 2345568999999888776654   456666544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.48  E-value=2.1e-10  Score=91.70  Aligned_cols=255  Identities=11%  Similarity=0.101  Sum_probs=149.8

Q ss_pred             cceeEEEEcCCCCEEEEecC----CCeEEEEeCCCC--eE--EEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCCeEE
Q 022870           19 ASVTDVCFHQTKPILFAGTT----GGELRIWDTVQH--RT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVK   89 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~   89 (291)
                      .....++++|++++|++...    +|.|..|++...  ++  +.......  ..-..++++|  ++++|+++. .+|+|.
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g--~~p~~i~~~~--~g~~l~vany~~g~v~  112 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG--SSPCHIAVDP--DGRFLYVANYGGGSVS  112 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS--SCEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC--CCcEEEEEec--CCCEEEEEEccCCeEE
Confidence            34567889999999988765    578999987753  33  22332222  3356899999  889888876 489999


Q ss_pred             EEECCCCCCCCCCcccc------------ccceEEEEEeecccCccceeccCCCCceeeecccCcc-c----cccCCCCC
Q 022870           90 CWDIENGGLSSNPSLTI------------KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET-V----DTDSLCDS  152 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~  152 (291)
                      ++++.....+.......            .....+...+.+........-.....+..++++.... +    ........
T Consensus       113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~  192 (345)
T PF10282_consen  113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS  192 (345)
T ss_dssp             EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred             EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence            99998743222111011            1122344555555444444344445566666655441 1    11222222


Q ss_pred             C---cccCCCCCcEEEEecCCcCeEEEEeCC--Ccc--eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEE
Q 022870          153 K---DDVPAEGPKYMAVAGEQLSEVEIWDLN--TAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (291)
Q Consensus       153 ~---~~~~~~~~~~~~~~g~~d~~i~~wd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (291)
                      .   ++|+|+++++++ ....++.|.+|++.  .+.  .+..+...  +.  +..  .......+. ++|+   |+.+.+
T Consensus       193 GPRh~~f~pdg~~~Yv-~~e~s~~v~v~~~~~~~g~~~~~~~~~~~--~~--~~~--~~~~~~~i~-ispd---g~~lyv  261 (345)
T PF10282_consen  193 GPRHLAFSPDGKYAYV-VNELSNTVSVFDYDPSDGSLTEIQTISTL--PE--GFT--GENAPAEIA-ISPD---GRFLYV  261 (345)
T ss_dssp             SEEEEEE-TTSSEEEE-EETTTTEEEEEEEETTTTEEEEEEEEESC--ET--TSC--SSSSEEEEE-E-TT---SSEEEE
T ss_pred             CCcEEEEcCCcCEEEE-ecCCCCcEEEEeecccCCceeEEEEeeec--cc--ccc--ccCCceeEE-EecC---CCEEEE
Confidence            2   999999987766 56778999999998  332  22222210  00  111  112456666 9998   663455


Q ss_pred             eecCCCcEEEEEccCCCCce---eeccccccceeEEEeecCCCeeEEec-CCCeEEEEEc--CCCceee
Q 022870          226 AGYEDGSILVWDIRNPGIPL---TAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNL--DHSTVSH  288 (291)
Q Consensus       226 ~g~~dg~i~vwd~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~--~~~~~~~  288 (291)
                      +....+.|.+|++......+   ..+.........++++|+|++|+++. .++.|.+|++  +++++..
T Consensus       262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence            55677899999994322222   23333344579999999999998776 5678999977  4666543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=2.9e-13  Score=107.19  Aligned_cols=168  Identities=19%  Similarity=0.226  Sum_probs=110.8

Q ss_pred             EEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCc
Q 022870           54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK  133 (291)
Q Consensus        54 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (291)
                      ..+.+|.+.  |.++.|+.  +|.+|++||.|-.+.|||.-..+...    .+..... ...|+                
T Consensus        44 ~eL~GH~GC--VN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~Kllh----sI~TgHt-aNIFs----------------   98 (758)
T KOG1310|consen   44 AELTGHTGC--VNCLEWNA--DGELLASGSDDTRLIVWDPFEYKLLH----SISTGHT-ANIFS----------------   98 (758)
T ss_pred             hhhccccce--ecceeecC--CCCEEeecCCcceEEeecchhcceee----eeecccc-cceeE----------------
Confidence            457789865  99999999  99999999999999999998665433    2222111 11111                


Q ss_pred             eeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcc----------eeeEecccccCCCCCCCCCc
Q 022870          134 DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE----------RCTRLHQNSCGGSPNFSSKG  203 (291)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~----------~~~~~~~~~~~~~~~~~~~~  203 (291)
                                          +.|-|....-++++|..|..|++||+...+          ....+.        .|....
T Consensus        99 --------------------vKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~--------cht~rV  150 (758)
T KOG1310|consen   99 --------------------VKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWS--------CHTDRV  150 (758)
T ss_pred             --------------------EeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhh--------hhhhhh
Confidence                                235555444455588889999999998532          122222        343333


Q ss_pred             ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc---------cccceeEEEeecCC-CeeEEecCC
Q 022870          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---------HLEPVLCLSIDESC-NGGISGGAD  273 (291)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---------h~~~v~~~~~~~~~-~~l~s~s~d  273 (291)
                      +.    ++ -.|+   +.+.+.++++||+|+-+|++.+..+-.....         .--...++..+|.. .+|+.|+.|
T Consensus       151 Kr----ia-~~p~---~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd  222 (758)
T KOG1310|consen  151 KR----IA-TAPN---GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD  222 (758)
T ss_pred             hh----ee-cCCC---CCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCC
Confidence            32    32 5555   3238999999999999999974333222211         11245677887754 478899999


Q ss_pred             CeEEEEEcC
Q 022870          274 QKIVLYNLD  282 (291)
Q Consensus       274 g~i~vw~~~  282 (291)
                      -..++||.+
T Consensus       223 pfarLYD~R  231 (758)
T KOG1310|consen  223 PFARLYDRR  231 (758)
T ss_pred             chhhhhhhh
Confidence            999999954

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1.5e-11  Score=101.09  Aligned_cols=182  Identities=15%  Similarity=0.109  Sum_probs=107.7

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC---CeEEEEECCCCCCCCCCccccccceEEEEEe
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKL  116 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
                      ..|.++|.. +.....+..+.  ..+.+.+|+|  ||+.|+..+.+   ..|.+||+.+++...  +.......  ..  
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~--~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~~~~g~~--~~--  244 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSP--EPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATGRRRV--VANFKGSN--SA--  244 (427)
T ss_pred             cEEEEECCC-CCCceEeccCC--CCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCCCEEE--eecCCCCc--cc--
Confidence            468888864 44444454455  4499999999  99988876643   459999998775321  11111000  00  


Q ss_pred             ecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEE--eCCCcceeeEecccccC
Q 022870          117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW--DLNTAERCTRLHQNSCG  194 (291)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~w--d~~~~~~~~~~~~~~~~  194 (291)
                                                           .+|+|||+.++++ .+.++...||  |+..+. ...+.     
T Consensus       245 -------------------------------------~~~SPDG~~la~~-~~~~g~~~Iy~~d~~~~~-~~~lt-----  280 (427)
T PRK02889        245 -------------------------------------PAWSPDGRTLAVA-LSRDGNSQIYTVNADGSG-LRRLT-----  280 (427)
T ss_pred             -------------------------------------eEECCCCCEEEEE-EccCCCceEEEEECCCCC-cEECC-----
Confidence                                                 4599999887653 4456665555  454443 33443     


Q ss_pred             CCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC
Q 022870          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ  274 (291)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  274 (291)
                         .+.    ....... |+|+   |+.++++...+|...+|.+...+.....+..+.......+|+|+|++|+..+.++
T Consensus       281 ---~~~----~~~~~~~-wSpD---G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~  349 (427)
T PRK02889        281 ---QSS----GIDTEPF-FSPD---GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG  349 (427)
T ss_pred             ---CCC----CCCcCeE-EcCC---CCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence               221    1223344 9998   5523444444566666665421222222222233345678999999998776554


Q ss_pred             ---eEEEEEcCCCcee
Q 022870          275 ---KIVLYNLDHSTVS  287 (291)
Q Consensus       275 ---~i~vw~~~~~~~~  287 (291)
                         .|.+||+.+++..
T Consensus       350 g~~~I~v~d~~~g~~~  365 (427)
T PRK02889        350 GAFKLYVQDLATGQVT  365 (427)
T ss_pred             CcEEEEEEECCCCCeE
Confidence               6999999887643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.46  E-value=1.1e-12  Score=94.74  Aligned_cols=159  Identities=18%  Similarity=0.261  Sum_probs=111.4

Q ss_pred             CccceeEEEEcC-CCC--EEEEecCCCeEEEEeCCCCeEEE----------EEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           17 HRASVTDVCFHQ-TKP--ILFAGTTGGELRIWDTVQHRTVS----------SSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        17 h~~~v~~l~~~~-~~~--~l~s~~~dg~v~iwd~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      ..+.+.|..+.. ++.  +++.|-.+|.|.+||+.++..+.          ....|.  .+|.++.|.+  .-+.=++|+
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~--qpvlsldyas--~~~rGisgg  224 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK--QPVLSLDYAS--SCDRGISGG  224 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc--Ccceeeeech--hhcCCcCCC
Confidence            456677777544 333  56778889999999999874332          233465  5599999988  445567888


Q ss_pred             CCCeEEEEECCCCCC--CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870           84 RDGTVKCWDIENGGL--SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (291)
                      .+..+..|++.....  ......+++.                                        ++-.++..-||++
T Consensus       225 a~dkl~~~Sl~~s~gslq~~~e~~lkn----------------------------------------pGv~gvrIRpD~K  264 (323)
T KOG0322|consen  225 ADDKLVMYSLNHSTGSLQIRKEITLKN----------------------------------------PGVSGVRIRPDGK  264 (323)
T ss_pred             ccccceeeeeccccCcccccceEEecC----------------------------------------CCccceEEccCCc
Confidence            888899999875421  1100111111                                        1111145668875


Q ss_pred             cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (291)
                       ++| +++.|+.||+|..++.+++..++        -|    .+.+.+++ |+|+.+    .+|+++.|+.|.+|++
T Consensus       265 -IlA-TAGWD~RiRVyswrtl~pLAVLk--------yH----sagvn~vA-fspd~~----lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  265 -ILA-TAGWDHRIRVYSWRTLNPLAVLK--------YH----SAGVNAVA-FSPDCE----LMAAASKDARISLWKL  322 (323)
T ss_pred             -EEe-ecccCCcEEEEEeccCCchhhhh--------hh----hcceeEEE-eCCCCc----hhhhccCCceEEeeec
Confidence             555 66679999999999999999888        45    46788887 999844    8999999999999986

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=9.5e-11  Score=96.87  Aligned_cols=205  Identities=10%  Similarity=0.020  Sum_probs=123.1

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCC---CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCC
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG   86 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg   86 (291)
                      .+.+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++... +....  ..+....|+|  +|+.|+ +.+.+|
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~--g~~~~~~~Sp--DG~~la~~~~~~g  265 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFE--GLNGAPAWSP--DGSKLAFVLSKDG  265 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCC--CCcCCeEECC--CCCEEEEEEccCC
Confidence            34455677788999999999988766543   469999998876543 22222  2256789999  988876 555555


Q ss_pred             --eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           87 --TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        87 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                        .|.+||+.+++...     +.......  .                                    ...|+|+|+.++
T Consensus       266 ~~~Iy~~d~~~~~~~~-----lt~~~~~~--~------------------------------------~~~~spDg~~i~  302 (430)
T PRK00178        266 NPEIYVMDLASRQLSR-----VTNHPAID--T------------------------------------EPFWGKDGRTLY  302 (430)
T ss_pred             CceEEEEECCCCCeEE-----cccCCCCc--C------------------------------------CeEECCCCCEEE
Confidence              58888988764321     11000000  0                                    044899998877


Q ss_pred             EEecCCc--CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCC--cEEEEEcc
Q 022870          165 AVAGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDIR  239 (291)
Q Consensus       165 ~~~g~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg--~i~vwd~~  239 (291)
                      +++ ..+  ..|+++|+.+++... +...      +.      ...... |+|+   |+ .|+..+ .++  .|.+||+.
T Consensus       303 f~s-~~~g~~~iy~~d~~~g~~~~-lt~~------~~------~~~~~~-~Spd---g~-~i~~~~~~~~~~~l~~~dl~  363 (430)
T PRK00178        303 FTS-DRGGKPQIYKVNVNGGRAER-VTFV------GN------YNARPR-LSAD---GK-TLVMVHRQDGNFHVAAQDLQ  363 (430)
T ss_pred             EEE-CCCCCceEEEEECCCCCEEE-eecC------CC------CccceE-ECCC---CC-EEEEEEccCCceEEEEEECC
Confidence            643 333  357778887776432 2210      11      112233 9998   44 454443 343  58889988


Q ss_pred             CCCCceeeccccccceeEEEeecCCCeeEEecCC---CeEEEEEcCCCc
Q 022870          240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHST  285 (291)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vw~~~~~~  285 (291)
                      + +.. ..+.. ........|+|+|+.++..+.+   ..|.+++++.+.
T Consensus       364 t-g~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~  409 (430)
T PRK00178        364 R-GSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV  409 (430)
T ss_pred             C-CCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            6 433 33322 2222356899999998766643   357777776543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.45  E-value=1.5e-11  Score=91.20  Aligned_cols=86  Identities=15%  Similarity=0.264  Sum_probs=77.9

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCe-EEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGE-LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      -..+.+|..+|.|++.+.+|.++||+|..|+ |||||..+|..+.+++.......|.+++|+|  +..+|+++|..|+|.
T Consensus       174 p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp--~~s~LavsSdKgTlH  251 (346)
T KOG2111|consen  174 PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP--NSSWLAVSSDKGTLH  251 (346)
T ss_pred             ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC--CccEEEEEcCCCeEE
Confidence            3568899999999999999999999999998 6899999999999998766667799999999  999999999999999


Q ss_pred             EEECCCCCC
Q 022870           90 CWDIENGGL   98 (291)
Q Consensus        90 iwd~~~~~~   98 (291)
                      |+.++....
T Consensus       252 iF~l~~~~~  260 (346)
T KOG2111|consen  252 IFSLRDTEN  260 (346)
T ss_pred             EEEeecCCC
Confidence            999987543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.44  E-value=1e-09  Score=86.03  Aligned_cols=242  Identities=8%  Similarity=0.076  Sum_probs=139.9

Q ss_pred             EcCCCCEEEEecC----------CCeEEEEeCCCCeEEEEEeeecCC-----cceEEEEEeecCCCCeEEEEe-C-CCeE
Q 022870           26 FHQTKPILFAGTT----------GGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPSIGLNKVISQG-R-DGTV   88 (291)
Q Consensus        26 ~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~-dg~i   88 (291)
                      ++||++.|+.+..          +..|.+||..+.+.+..+.....+     ..-..++++|  ||++|+... . +..|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V  130 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPSPAV  130 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC--CCCEEEEecCCCCCEE
Confidence            8999998877655          789999999999999888754321     1134788999  999888766 3 6899


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeeccc-Ccccccc---CCCCCC-----cccCC-
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETVDTD---SLCDSK-----DDVPA-  158 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~-----~~~~~-  158 (291)
                      .+.|+.+++.+.    ++.... ....+............++. ...+.+.. ++.....   +.....     -.|.+ 
T Consensus       131 ~VvD~~~~kvv~----ei~vp~-~~~vy~t~e~~~~~~~~Dg~-~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~  204 (352)
T TIGR02658       131 GVVDLEGKAFVR----MMDVPD-CYHIFPTANDTFFMHCRDGS-LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK  204 (352)
T ss_pred             EEEECCCCcEEE----EEeCCC-CcEEEEecCCccEEEeecCc-eEEEEecCCCceEEeeeeeecCCccccccCCceEcC
Confidence            999999988654    222211 00000000000011111111 11111100 0000000   001000     13455 


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCCcc-----eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe-ec----
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNTAE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GY----  228 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~----  228 (291)
                      +|..+++ +..  |.|.+.|+...+     ....+....     .......+....++ ++|++   + .+++ ..    
T Consensus       205 dg~~~~v-s~e--G~V~~id~~~~~~~~~~~~~~~~~~~-----~~~~wrP~g~q~ia-~~~dg---~-~lyV~~~~~~~  271 (352)
T TIGR02658       205 SGRLVWP-TYT--GKIFQIDLSSGDAKFLPAIEAFTEAE-----KADGWRPGGWQQVA-YHRAR---D-RIYLLADQRAK  271 (352)
T ss_pred             CCcEEEE-ecC--CeEEEEecCCCcceecceeeeccccc-----cccccCCCcceeEE-EcCCC---C-EEEEEecCCcc
Confidence            7766654 333  999999965433     222222100     00000111112254 99883   3 3333 31    


Q ss_pred             -----CCCcEEEEEccCCCCceeeccccccceeEEEeecCCC-eeEEec-CCCeEEEEEcCCCceeeee
Q 022870          229 -----EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGG-ADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       229 -----~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s-~dg~i~vw~~~~~~~~~~~  290 (291)
                           ..+.|.++|..+ .+.+..+.. ...+..++++|+++ +|++.. .++.|.+.|..+++.+.++
T Consensus       272 ~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       272 WTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence                 225899999998 788877764 46889999999999 777555 6788999999999998875

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=2e-11  Score=100.71  Aligned_cols=180  Identities=14%  Similarity=0.133  Sum_probs=111.1

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC---CeEEEEECCCCCCCCCCccccccceEEEEEe
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKL  116 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
                      .+|.+||... .....+..+.  ..+.+.+|+|  ||+.|+..+.+   ..|.+||+.+++...  +.......  .   
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~--~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g~~~~--l~~~~g~~--~---  251 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSA--EPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATGQREL--VASFRGIN--G---  251 (433)
T ss_pred             EEEEEECCCC-CCceEeecCC--CccccccCCC--CCCEEEEEecCCCCcEEEEEECCCCCEEE--eccCCCCc--c---
Confidence            4699999754 4444455555  4499999999  99988877643   469999998764311  11110000  0   


Q ss_pred             ecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec-CCcCeEEEEeCCCcceeeEecccccCC
Q 022870          117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSCGG  195 (291)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~~wd~~~~~~~~~~~~~~~~~  195 (291)
                                                          ..+|+|+|+.++++.. ..+..|++||+.+++.. .+.      
T Consensus       252 ------------------------------------~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt------  288 (433)
T PRK04922        252 ------------------------------------APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLT------  288 (433)
T ss_pred             ------------------------------------CceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECc------
Confidence                                                0459999988765432 22336999999887643 333      


Q ss_pred             CCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCCc--EEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecC
Q 022870          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA  272 (291)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~  272 (291)
                        .+.    ....... |+|+   |+ .|+..+ .+|.  |+++|+.+ ++ ...+..+.......+|+|+|++|+..+.
T Consensus       289 --~~~----~~~~~~~-~spD---G~-~l~f~sd~~g~~~iy~~dl~~-g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        289 --NHF----GIDTEPT-WAPD---GK-SIYFTSDRGGRPQIYRVAASG-GS-AERLTFQGNYNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             --cCC----CCccceE-ECCC---CC-EEEEEECCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEEC
Confidence              221    1223344 9998   55 555444 4554  66677765 33 2333333344557899999999887654


Q ss_pred             CC---eEEEEEcCCCcee
Q 022870          273 DQ---KIVLYNLDHSTVS  287 (291)
Q Consensus       273 dg---~i~vw~~~~~~~~  287 (291)
                      ++   .|.+||+.+++..
T Consensus       356 ~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        356 SGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             CCCceeEEEEECCCCCeE
Confidence            33   6999999887653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=8.2e-11  Score=96.70  Aligned_cols=178  Identities=13%  Similarity=0.088  Sum_probs=109.4

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe---CCCeEEEEECCCCCCCCCCccccccceEEEEEe
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG---RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL  116 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
                      ..|.+||....+. +.+..+.  ..+.+.+|+|  ||+.|+..+   .+..|.+||+.+++...  +........     
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~--~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~~~-----  246 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSP--QPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNG-----  246 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCC--CceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCCeEE--ccCCCCCcC-----
Confidence            3799999865443 3343344  4599999999  999888654   24579999998764321  111111000     


Q ss_pred             ecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC--eEEEEeCCCcceeeEecccccC
Q 022870          117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG  194 (291)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~~  194 (291)
                                                          ..+|+|||+.++++. +.+|  .|++||+.+++......     
T Consensus       247 ------------------------------------~~~~SPDG~~La~~~-~~~g~~~I~~~d~~tg~~~~lt~-----  284 (429)
T PRK03629        247 ------------------------------------APAFSPDGSKLAFAL-SKTGSLNLYVMDLASGQIRQVTD-----  284 (429)
T ss_pred             ------------------------------------CeEECCCCCEEEEEE-cCCCCcEEEEEECCCCCEEEccC-----
Confidence                                                045999998877643 2233  59999998876543322     


Q ss_pred             CCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCCc--EEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec
Q 022870          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG  271 (291)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  271 (291)
                         ..     ....... |+|+   |+ .|+..+ .++.  |+++|+.+ +. ...+..+........|+|+|++|+..+
T Consensus       285 ---~~-----~~~~~~~-wSPD---G~-~I~f~s~~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~  349 (429)
T PRK03629        285 ---GR-----SNNTEPT-WFPD---SQ-NLAYTSDQAGRPQVYKVNING-GA-PQRITWEGSQNQDADVSSDGKFMVMVS  349 (429)
T ss_pred             ---CC-----CCcCceE-ECCC---CC-EEEEEeCCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEE
Confidence               11     1233444 9998   54 555444 4454  44456654 33 344444444566789999999987765


Q ss_pred             CC---CeEEEEEcCCCce
Q 022870          272 AD---QKIVLYNLDHSTV  286 (291)
Q Consensus       272 ~d---g~i~vw~~~~~~~  286 (291)
                      .+   ..|.+||+++++.
T Consensus       350 ~~~g~~~I~~~dl~~g~~  367 (429)
T PRK03629        350 SNGGQQHIAKQDLATGGV  367 (429)
T ss_pred             ccCCCceEEEEECCCCCe
Confidence            43   3588999988764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.42  E-value=3.8e-13  Score=111.43  Aligned_cols=205  Identities=17%  Similarity=0.242  Sum_probs=131.5

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .++..++||.+.|+.++.+.+..++++++.|..|++|.+.++.++..+.+|.+.  |++++|+|  -    .+.+.||++
T Consensus       223 ~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga--vtaiafsP--~----~sss~dgt~  294 (1113)
T KOG0644|consen  223 RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA--VTAIAFSP--R----ASSSDDGTC  294 (1113)
T ss_pred             hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc--eeeeccCc--c----ccCCCCCce
Confidence            567889999999999999999989999999999999999999999999999977  99999999  3    278899999


Q ss_pred             EEEECCCCCCCC--CCccccccceEEEEEeecccCccc------------------------eeccCC--C---------
Q 022870           89 KCWDIENGGLSS--NPSLTIKTNSYHFCKLSLVKEPYA------------------------NAKQAN--E---------  131 (291)
Q Consensus        89 ~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~--~---------  131 (291)
                      ++||.+-.....  .|...-.........+...+....                        .+...+  .         
T Consensus       295 ~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~  374 (1113)
T KOG0644|consen  295 RIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARND  374 (1113)
T ss_pred             EeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeee
Confidence            999988211110  000000000000000000000000                        000000  0         


Q ss_pred             -CceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCccee
Q 022870          132 -PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM  206 (291)
Q Consensus       132 -~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (291)
                       ....|++..+. ....+.+|..    +.++|.+..+...+| .||...|||+-.+.+++.+..       +|.     .
T Consensus       375 ~~~~vwnl~~g~-l~H~l~ghsd~~yvLd~Hpfn~ri~msag-~dgst~iwdi~eg~pik~y~~-------gh~-----k  440 (1113)
T KOG0644|consen  375 HRLCVWNLYTGQ-LLHNLMGHSDEVYVLDVHPFNPRIAMSAG-YDGSTIIWDIWEGIPIKHYFI-------GHG-----K  440 (1113)
T ss_pred             eEeeeeecccch-hhhhhcccccceeeeeecCCCcHhhhhcc-CCCceEeeecccCCcceeeec-------ccc-----e
Confidence             00011111111 1112233433    889999988777555 599999999999988877763       442     3


Q ss_pred             eeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      ....+ |+++   |. .++....-|.++|.....
T Consensus       441 l~d~k-FSqd---gt-s~~lsd~hgql~i~g~gq  469 (1113)
T KOG0644|consen  441 LVDGK-FSQD---GT-SIALSDDHGQLYILGTGQ  469 (1113)
T ss_pred             eeccc-cCCC---Cc-eEecCCCCCceEEeccCC
Confidence            33444 9998   44 777777788888887654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=7.4e-13  Score=105.41  Aligned_cols=218  Identities=14%  Similarity=0.193  Sum_probs=149.4

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC-------CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      +..+.||+..|+.++--.+.+-+++++.|.+|++|.++.       ..+..++..|+  .+|.++.|..  +-++++  +
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk--k~i~~igfL~--~lr~i~--S  801 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK--KPIHDIGFLA--DLRSIA--S  801 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc--Ccccceeeee--ccceee--e
Confidence            567889999999998777778899999999999999763       23666777888  4599999998  645554  4


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                      .||-|.+||.--++...+.....+.......                                       .++-.-.+.+
T Consensus       802 cD~giHlWDPFigr~Laq~~dapk~~a~~~i---------------------------------------kcl~nv~~~i  842 (1034)
T KOG4190|consen  802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNI---------------------------------------KCLENVDRHI  842 (1034)
T ss_pred             ccCcceeecccccchhHhhhcCcccCCCcee---------------------------------------EecccCcchh
Confidence            5788999998766543311111111111110                                       0111112345


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      +.+.++...+|+++|.+..+-...++.       ......++...+++ ..|.   |. .+++|-.+|.|.+.|.++ ++
T Consensus       843 liAgcsaeSTVKl~DaRsce~~~E~kV-------cna~~Pna~~R~ia-Va~~---GN-~lAa~LSnGci~~LDaR~-G~  909 (1034)
T KOG4190|consen  843 LIAGCSAESTVKLFDARSCEWTCELKV-------CNAPGPNALTRAIA-VADK---GN-KLAAALSNGCIAILDARN-GK  909 (1034)
T ss_pred             eeeeccchhhheeeecccccceeeEEe-------ccCCCCchheeEEE-eccC---cc-hhhHHhcCCcEEEEecCC-Cc
Confidence            554557788999999999887666653       11122244555665 7776   44 899999999999999999 88


Q ss_pred             ceeeccccccceeEEEeecCCCeeEEecCCCeEEE-EEcCCCcee
Q 022870          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL-YNLDHSTVS  287 (291)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v-w~~~~~~~~  287 (291)
                      .+..++..+.....++ .|..+.|+....|.++.| |..-.+...
T Consensus       910 vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh  953 (1034)
T KOG4190|consen  910 VINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH  953 (1034)
T ss_pred             eeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence            8888887666555554 344557788888888888 876665443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.42  E-value=5.9e-11  Score=102.57  Aligned_cols=262  Identities=13%  Similarity=0.084  Sum_probs=153.4

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-------EEEEEeeecCCcceEEE-EEeecCCCC-eEEEE
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-------TVSSSWVHSAAHGIVSV-ATGPSIGLN-KVISQ   82 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~-~~~~~~~~~-~l~s~   82 (291)
                      .++..-..++.++.+.+.+..+|.++.||.|++.+++..+       +.+....+.. +.+.++ +|... .+. .++.+
T Consensus      1092 ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~-~~S~~lvy~ 1169 (1431)
T KOG1240|consen 1092 LTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKD-GVVVSMHAFTAI-VQSHVLVYA 1169 (1431)
T ss_pred             EEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCC-CceEEeeccccc-ccceeEEEE
Confidence            3444446788999999999999999999999999987521       1222222322 234444 34332 233 77788


Q ss_pred             eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccc-cCCCCCC---cccCC
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLCDSK---DDVPA  158 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~  158 (291)
                      ...+.|..||++.....+......+.+.......++..... ......+...+||++-.-.+.. ..+.+..   +..+|
T Consensus      1170 T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wl-viGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1170 TDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWL-VIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred             EeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEE-EEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence            88899999999987665533333444444444444333322 2223344577788877664443 3333333   44444


Q ss_pred             CCC--cEEEEecC-CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcc-----eeeeeE-EEecCCCCCCceEEEeecC
Q 022870          159 EGP--KYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR-----GMCMAV-QAYLPSKSQGFVNVLAGYE  229 (291)
Q Consensus       159 ~~~--~~~~~~g~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~p~~~~g~~~l~~g~~  229 (291)
                      .-+  ...+++|+ ..+.|.+|++.++.+...+-.....+.-.+..+.+     ...... +++...   +. ++++|+.
T Consensus      1249 ~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~---~~-~~ltggs 1324 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK---NG-FLLTGGS 1324 (1431)
T ss_pred             cCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC---Cc-eeeecCC
Confidence            332  44554555 67899999999997766654321111111111111     111111 112211   22 8999999


Q ss_pred             CCcEEEEEccCCCCc-----------------------------------------------eee--------ccccccc
Q 022870          230 DGSILVWDIRNPGIP-----------------------------------------------LTA--------MKVHLEP  254 (291)
Q Consensus       230 dg~i~vwd~~~~~~~-----------------------------------------------~~~--------~~~h~~~  254 (291)
                      |..|+.||...+...                                               ...        -..|.++
T Consensus      1325 d~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~ 1404 (1431)
T KOG1240|consen 1325 DMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDP 1404 (1431)
T ss_pred             ccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccch
Confidence            999999998653211                                               000        0147778


Q ss_pred             eeEEEee-cCCCeeEEecCCCeEEEEE
Q 022870          255 VLCLSID-ESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       255 v~~~~~~-~~~~~l~s~s~dg~i~vw~  280 (291)
                      |++|++- .+..+|++++.||.|+||.
T Consensus      1405 Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1405 ITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhhhhhhccCccEEEEecCCCeeeecC
Confidence            9999882 2356889999999999994

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=8.3e-11  Score=97.13  Aligned_cols=177  Identities=15%  Similarity=0.077  Sum_probs=111.3

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC---CCeEEEEECCCCCCCCCCccccccceEEEEEe
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL  116 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
                      ..|.+||.. +.....+..+.  ..+.+.+|+|  ||+.|+..+.   +..|.+||+.+++...  +......  ..   
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~--~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g~~~~--l~~~~g~--~~---  249 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGS--SLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETGQREL--VGNFPGM--TF---  249 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCC--CCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCCcEEE--eecCCCc--cc---
Confidence            478899975 44444555555  4499999999  9998887653   4689999998764311  1000000  00   


Q ss_pred             ecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC--eEEEEeCCCcceeeEecccccC
Q 022870          117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG  194 (291)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~~  194 (291)
                                                          ..+|+|+|+.++++ .+.++  .|.+||+.+++. ..+.     
T Consensus       250 ------------------------------------~~~~SPDG~~la~~-~~~~g~~~Iy~~d~~~~~~-~~Lt-----  286 (435)
T PRK05137        250 ------------------------------------APRFSPDGRKVVMS-LSQGGNTDIYTMDLRSGTT-TRLT-----  286 (435)
T ss_pred             ------------------------------------CcEECCCCCEEEEE-EecCCCceEEEEECCCCce-EEcc-----
Confidence                                                05599999887654 33344  478889987764 3343     


Q ss_pred             CCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCC--cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec
Q 022870          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG  271 (291)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  271 (291)
                         .+.    ....... |+|+   |+ .|+..+ .+|  .|+++|+.. +. ...+..+...+....|+|+|+.|+..+
T Consensus       287 ---~~~----~~~~~~~-~spD---G~-~i~f~s~~~g~~~Iy~~d~~g-~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~  352 (435)
T PRK05137        287 ---DSP----AIDTSPS-YSPD---GS-QIVFESDRSGSPQLYVMNADG-SN-PRRISFGGGRYSTPVWSPRGDLIAFTK  352 (435)
T ss_pred             ---CCC----CccCcee-EcCC---CC-EEEEEECCCCCCeEEEEECCC-CC-eEEeecCCCcccCeEECCCCCEEEEEE
Confidence               221    1233344 9998   54 555444 343  688888764 33 344444455667789999999998765


Q ss_pred             CC---CeEEEEEcCCCc
Q 022870          272 AD---QKIVLYNLDHST  285 (291)
Q Consensus       272 ~d---g~i~vw~~~~~~  285 (291)
                      .+   ..|.+||+.++.
T Consensus       353 ~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        353 QGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             cCCCceEEEEEECCCCc
Confidence            43   368888886544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.41  E-value=3.9e-12  Score=94.87  Aligned_cols=188  Identities=14%  Similarity=0.110  Sum_probs=121.1

Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCe-EEEEeCCCeEEEEECCCCCCCCC
Q 022870           23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGRDGTVKCWDIENGGLSSN  101 (291)
Q Consensus        23 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~  101 (291)
                      -++|||+|+++|+++.- .+.|-|.++-+..+.+..-   +.|.-+.|..  |.-+ |.....|+.|.+|++...+... 
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpew~c-   85 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPEWYC-   85 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeec--cceeeeeeeeccceEEEEEeecceeEE-
Confidence            36899999999998765 7888888876655444332   3488899987  6544 4467789999999998765422 


Q ss_pred             CccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCC
Q 022870          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT  181 (291)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~  181 (291)
                         .+...+.....                                      ++|+|+|+.++. +.+.|-.|.+|.+.+
T Consensus        86 ---kIdeg~agls~--------------------------------------~~WSPdgrhiL~-tseF~lriTVWSL~t  123 (447)
T KOG4497|consen   86 ---KIDEGQAGLSS--------------------------------------ISWSPDGRHILL-TSEFDLRITVWSLNT  123 (447)
T ss_pred             ---EeccCCCccee--------------------------------------eeECCCcceEee-eecceeEEEEEEecc
Confidence               22222111110                                      559999998887 556689999999988


Q ss_pred             cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec---------------------------------
Q 022870          182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---------------------------------  228 (291)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---------------------------------  228 (291)
                      .+....--          .   +..+-.+ +|+|+   |+ +.+..+                                 
T Consensus       124 ~~~~~~~~----------p---K~~~kg~-~f~~d---g~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltgie  185 (447)
T KOG4497|consen  124 QKGYLLPH----------P---KTNVKGY-AFHPD---GQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIE  185 (447)
T ss_pred             ceeEEecc----------c---ccCceeE-EECCC---Cc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCce
Confidence            76543221          1   1112233 38877   44 443332                                 


Q ss_pred             ---CCCcEEEEEccCCCCceeeccccc-cceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          229 ---EDGSILVWDIRNPGIPLTAMKVHL-EPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       229 ---~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                         ++..+.|||--- .-.+  +..|. -.+..++|+|.+++|+.|+.|+.+||-+
T Consensus       186 WsPdg~~laVwd~~L-eykv--~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  186 WSPDGNWLAVWDNVL-EYKV--YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             ECCCCcEEEEecchh-hhee--eeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence               123455555332 1111  12222 4688899999999999999999998855

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=4.3e-12  Score=97.28  Aligned_cols=171  Identities=18%  Similarity=0.149  Sum_probs=118.7

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCC---C-eEE-EEeC
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL---N-KVI-SQGR   84 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~l~-s~~~   84 (291)
                      .+.....|.++|.+|.|+|||++|++-+.| ..+||+.+++..+..............+.|+.  ++   . +++ ....
T Consensus       178 t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~--d~~~~~l~laa~~~~  254 (398)
T KOG0771|consen  178 TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV--DNAQETLRLAASQFP  254 (398)
T ss_pred             hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc--cCCCceEEEEEecCC
Confidence            344556799999999999999999999999 89999999997777665443335577888887  54   2 222 3344


Q ss_pred             CCeEEEEECCCCCCCC--CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCc
Q 022870           85 DGTVKCWDIENGGLSS--NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (291)
                      -+.|+.||+..-+...  +....+.......+                                       ++.+++|+.
T Consensus       255 ~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSs---------------------------------------l~VS~dGkf  295 (398)
T KOG0771|consen  255 GGGVRLCDISLWSGSNFLRLRKKIKRFKSISS---------------------------------------LAVSDDGKF  295 (398)
T ss_pred             CCceeEEEeeeeccccccchhhhhhccCccee---------------------------------------EEEcCCCcE
Confidence            5667777765332110  00000111101111                                       668889875


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      +.  -|+.||.|-+++..+.+.++..+.       .|    ...++.+. |+|+..    ++++-+.+..+.|..+.-
T Consensus       296 ~A--lGT~dGsVai~~~~~lq~~~~vk~-------aH----~~~VT~lt-F~Pdsr----~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  296 LA--LGTMDGSVAIYDAKSLQRLQYVKE-------AH----LGFVTGLT-FSPDSR----YLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EE--EeccCCcEEEEEeceeeeeEeehh-------hh----eeeeeeEE-EcCCcC----cccccccCCceeEEEEee
Confidence            44  577799999999999988888775       45    56889998 999843    788888888888887753

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=2.4e-10  Score=94.36  Aligned_cols=202  Identities=12%  Similarity=0.069  Sum_probs=115.8

Q ss_pred             ecCCccceeEEEEcCCCCEEEEecCC---CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCe--
Q 022870           14 LRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT--   87 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--   87 (291)
                      +..+...+.+..|+|||+.|+..+.+   ..|.+||+.+++... +....  ......+|+|  ||+.|+ +.+.+|.  
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~--g~~~~~~wSP--DG~~La~~~~~~g~~~  287 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFP--GINGAPRFSP--DGKKLALVLSKDGQPE  287 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCC--CCcCCeeECC--CCCEEEEEEeCCCCeE
Confidence            33345667889999999988766432   368899998776533 22222  2245789999  998776 4566665  


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (291)
                      |.++|+.+++...     +.......                                      ...+|+|+|+.+++++
T Consensus       288 Iy~~dl~tg~~~~-----lt~~~~~~--------------------------------------~~p~wSpDG~~I~f~s  324 (448)
T PRK04792        288 IYVVDIATKALTR-----ITRHRAID--------------------------------------TEPSWHPDGKSLIFTS  324 (448)
T ss_pred             EEEEECCCCCeEE-----CccCCCCc--------------------------------------cceEECCCCCEEEEEE
Confidence            7777887664321     11100000                                      0045999998876643


Q ss_pred             cCCc--CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC--cEEEEEccCCCC
Q 022870          168 GEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGI  243 (291)
Q Consensus       168 g~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~  243 (291)
                       ..+  ..|.++|+.+++... +...      +.      ...... |+|+   |+.++++...++  .|.++|+.+ +.
T Consensus       325 -~~~g~~~Iy~~dl~~g~~~~-Lt~~------g~------~~~~~~-~SpD---G~~l~~~~~~~g~~~I~~~dl~~-g~  385 (448)
T PRK04792        325 -ERGGKPQIYRVNLASGKVSR-LTFE------GE------QNLGGS-ITPD---GRSMIMVNRTNGKFNIARQDLET-GA  385 (448)
T ss_pred             -CCCCCceEEEEECCCCCEEE-EecC------CC------CCcCee-ECCC---CCEEEEEEecCCceEEEEEECCC-CC
Confidence             333  357777887766432 2210      11      112233 9998   552444444444  456677776 43


Q ss_pred             ceeeccccccceeEEEeecCCCeeEEecCC-C--eEEEEEcCCC
Q 022870          244 PLTAMKVHLEPVLCLSIDESCNGGISGGAD-Q--KIVLYNLDHS  284 (291)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-g--~i~vw~~~~~  284 (291)
                      . ..+... .......|+|+|+.|+..+.+ |  .+.+++.+..
T Consensus       386 ~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~  427 (448)
T PRK04792        386 M-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR  427 (448)
T ss_pred             e-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            3 333322 122345799999988765543 3  3777787543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=3.3e-11  Score=91.78  Aligned_cols=183  Identities=16%  Similarity=0.162  Sum_probs=125.2

Q ss_pred             cceeEEEEcC-CCCEEEEecCC--CeEEEEeCCCCeEEEEEeeecC-------CcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           19 ASVTDVCFHQ-TKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSA-------AHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        19 ~~v~~l~~~~-~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ..+..|.-++ +..++|+|+..  ..++|||+++.+.+.+-+.-..       +-.++++.|.+..+...|+++..-+.|
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv  228 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV  228 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence            3455566666 34466779998  8899999998755544322111       123578889882226899999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      ++||.+.++   .|+..+.........                                      +...|++..++  +|
T Consensus       229 R~YDt~~qR---RPV~~fd~~E~~is~--------------------------------------~~l~p~gn~Iy--~g  265 (412)
T KOG3881|consen  229 RLYDTRHQR---RPVAQFDFLENPISS--------------------------------------TGLTPSGNFIY--TG  265 (412)
T ss_pred             EEecCcccC---cceeEeccccCccee--------------------------------------eeecCCCcEEE--Ee
Confidence            999999664   334333322111110                                      34668887655  56


Q ss_pred             CCcCeEEEEeCCCcceeeE-ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870          169 EQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (291)
                      ..-+.+..||++.++.... +.        +    ..+.+.++. .+|..+    ++++++-|..|||+|+.+ .+++..
T Consensus       266 n~~g~l~~FD~r~~kl~g~~~k--------g----~tGsirsih-~hp~~~----~las~GLDRyvRIhD~kt-rkll~k  327 (412)
T KOG3881|consen  266 NTKGQLAKFDLRGGKLLGCGLK--------G----ITGSIRSIH-CHPTHP----VLASCGLDRYVRIHDIKT-RKLLHK  327 (412)
T ss_pred             cccchhheecccCceeeccccC--------C----ccCCcceEE-EcCCCc----eEEeeccceeEEEeeccc-chhhhh
Confidence            6679999999999987765 43        3    356677776 888743    999999999999999998 676655


Q ss_pred             ccccccceeEEEeecC
Q 022870          248 MKVHLEPVLCLSIDES  263 (291)
Q Consensus       248 ~~~h~~~v~~~~~~~~  263 (291)
                      ..- ...+++|.+.++
T Consensus       328 vYv-Ks~lt~il~~~~  342 (412)
T KOG3881|consen  328 VYV-KSRLTFILLRDD  342 (412)
T ss_pred             hhh-hccccEEEecCC
Confidence            443 456677777543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.37  E-value=2.7e-11  Score=102.78  Aligned_cols=197  Identities=15%  Similarity=0.206  Sum_probs=139.1

Q ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceE---EEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV---SVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      |....+..+...++.++.+..+.+||...+.....+..... ....   -+.+++  +.-++++|+.-+.|.+|+....+
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er-~~l~~~~~~g~s~--~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER-CTLYSSLIIGDSA--EELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCce-EEEEeEEEEeccC--cEEEEEeccccccEEEEeccccC
Confidence            34444455666888888899999999887766655543321 1112   222344  44688899999999999988332


Q ss_pred             CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEE
Q 022870           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (291)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~w  177 (291)
                      .   +. .+..+..  ..|+                                    +.++-+|.+++  +.+.|.++++|
T Consensus       167 ~---p~-~l~GHeG--~iF~------------------------------------i~~s~dg~~i~--s~SdDRsiRlW  202 (967)
T KOG0974|consen  167 K---PI-RLKGHEG--SIFS------------------------------------IVTSLDGRYIA--SVSDDRSIRLW  202 (967)
T ss_pred             C---cc-eecccCC--ceEE------------------------------------EEEccCCcEEE--EEecCcceeee
Confidence            1   12 1111111  1111                                    44777887665  66789999999


Q ss_pred             eCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc-cee
Q 022870          178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PVL  256 (291)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~  256 (291)
                      ++.+.+.....-.       +|    ...++.+. |.|+      .++++++|.+.++|+..  +..+..+.+|.. .++
T Consensus       203 ~i~s~~~~~~~~f-------gH----saRvw~~~-~~~n------~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~iw  262 (967)
T KOG0974|consen  203 PIDSREVLGCTGF-------GH----SARVWACC-FLPN------RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKGIW  262 (967)
T ss_pred             ecccccccCcccc-------cc----cceeEEEE-eccc------eeEEeccceEEEEEecc--cceehhhhhhhhccee
Confidence            9999876651111       55    55677876 9987      89999999999999776  566668888864 699


Q ss_pred             EEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          257 CLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       257 ~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      .++.+++...++|++.|+.+++|++...
T Consensus       263 ~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  263 KIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            9999999999999999999999998754

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=2.3e-11  Score=97.07  Aligned_cols=204  Identities=13%  Similarity=0.166  Sum_probs=139.4

Q ss_pred             eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCC
Q 022870           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  101 (291)
                      ..++++.-..-|+.++....|.-.+++.|..+..+......  +.+|..++  ...+|++|+.+|.|..||.++......
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~--lN~v~in~--~hgLla~Gt~~g~VEfwDpR~ksrv~~  212 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGE--LNVVSINE--EHGLLACGTEDGVVEFWDPRDKSRVGT  212 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEcccccccccccccccc--ceeeeecC--ccceEEecccCceEEEecchhhhhhee
Confidence            45666654444555666667989999999999888876644  99999999  768889999999999999998765431


Q ss_pred             Cccc--cccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeC
Q 022870          102 PSLT--IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL  179 (291)
Q Consensus       102 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~  179 (291)
                      .-..  +...+.....                                 ..-+.+.|+-+|-.+  +.|..+|.+.|||+
T Consensus       213 l~~~~~v~s~pg~~~~---------------------------------~svTal~F~d~gL~~--aVGts~G~v~iyDL  257 (703)
T KOG2321|consen  213 LDAASSVNSHPGGDAA---------------------------------PSVTALKFRDDGLHV--AVGTSTGSVLIYDL  257 (703)
T ss_pred             eecccccCCCcccccc---------------------------------CcceEEEecCCceeE--EeeccCCcEEEEEc
Confidence            0000  0000000000                                 000005577776433  36777999999999


Q ss_pred             CCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEE
Q 022870          180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS  259 (291)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~  259 (291)
                      ++.+++..-.         |..  ..++..+. |.+.+  ++..+++ .....++|||-.+ +++...+.. ...++.+|
T Consensus       258 Ra~~pl~~kd---------h~~--e~pi~~l~-~~~~~--~q~~v~S-~Dk~~~kiWd~~~-Gk~~asiEp-t~~lND~C  320 (703)
T KOG2321|consen  258 RASKPLLVKD---------HGY--ELPIKKLD-WQDTD--QQNKVVS-MDKRILKIWDECT-GKPMASIEP-TSDLNDFC  320 (703)
T ss_pred             ccCCceeecc---------cCC--ccceeeec-ccccC--CCceEEe-cchHHhhhccccc-CCceeeccc-cCCcCcee
Confidence            9998876554         322  34556665 87762  3324444 4567899999998 888888876 44599999


Q ss_pred             eecCCCeeEEecCCCeEEEEEc
Q 022870          260 IDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       260 ~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      +-|++-+++++-.++.+..|=+
T Consensus       321 ~~p~sGm~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  321 FVPGSGMFFTANESSKMHTYYI  342 (703)
T ss_pred             eecCCceEEEecCCCcceeEEc
Confidence            9999889999988877766544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=8e-10  Score=90.64  Aligned_cols=210  Identities=10%  Similarity=0.107  Sum_probs=116.3

Q ss_pred             ecCCccceeEEEEcCCCCEE---EEecCC--CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CC-
Q 022870           14 LRGHRASVTDVCFHQTKPIL---FAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG-   86 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l---~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg-   86 (291)
                      +......+..=+|+|||+.+   ++...+  ..|.+.++..++...... ...  .....+|+|  ||+.|+..+. +| 
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g--~~~~p~wSP--DG~~Laf~s~~~g~  254 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQG--NQLMPTFSP--RKKLLAFISDRYGN  254 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCC--CccceEECC--CCCEEEEEECCCCC
Confidence            33344556777999998742   344444  357788888775443322 222  256789999  9988875442 23 


Q ss_pred             ---eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           87 ---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        87 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                         .+..|++..+.... +. .+.....     ..                                ....+|+|||+.+
T Consensus       255 ~di~~~~~~~~~g~~g~-~~-~lt~~~~-----~~--------------------------------~~~p~wSPDG~~L  295 (428)
T PRK01029        255 PDLFIQSFSLETGAIGK-PR-RLLNEAF-----GT--------------------------------QGNPSFSPDGTRL  295 (428)
T ss_pred             cceeEEEeecccCCCCc-ce-EeecCCC-----CC--------------------------------cCCeEECCCCCEE
Confidence               34446665431100 00 0000000     00                                0004599999887


Q ss_pred             EEEecCCcCeEEEE--eCCC-cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe-ecCC--CcEEEEE
Q 022870          164 MAVAGEQLSEVEIW--DLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYED--GSILVWD  237 (291)
Q Consensus       164 ~~~~g~~d~~i~~w--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~~d--g~i~vwd  237 (291)
                      +.++ ..+|...+|  ++.. +.....+.        .+    ........ |+|+   |+ .|+. +..+  ..|++||
T Consensus       296 af~s-~~~g~~~ly~~~~~~~g~~~~~lt--------~~----~~~~~~p~-wSPD---G~-~Laf~~~~~g~~~I~v~d  357 (428)
T PRK01029        296 VFVS-NKDGRPRIYIMQIDPEGQSPRLLT--------KK----YRNSSCPA-WSPD---GK-KIAFCSVIKGVRQICVYD  357 (428)
T ss_pred             EEEE-CCCCCceEEEEECcccccceEEec--------cC----CCCcccee-ECCC---CC-EEEEEEcCCCCcEEEEEE
Confidence            7643 345654555  4432 22233333        11    11223444 9998   55 4544 4333  4699999


Q ss_pred             ccCCCCceeeccccccceeEEEeecCCCeeEEecC---CCeEEEEEcCCCcee
Q 022870          238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTVS  287 (291)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---dg~i~vw~~~~~~~~  287 (291)
                      +.+ ++. ..+......+....|+|+|+.|+..+.   +..|.+||+.+++..
T Consensus       358 l~~-g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        358 LAT-GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR  408 (428)
T ss_pred             CCC-CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            987 443 344333445678999999998864332   357899999887653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.35  E-value=6.7e-11  Score=86.97  Aligned_cols=203  Identities=16%  Similarity=0.138  Sum_probs=132.3

Q ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE--EEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~   98 (291)
                      ..++.|++.+..++++..+|.+.+-+......  ++.++.|.-+  ++-..|+.. +.+.+++|+.|+.+..||++-.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E--~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE--AWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee--eeeeecccC-CCceEEecCCCceEEEEEecCCcc
Confidence            45678888888899999999999666544433  3367888855  999999875 447899999999999999993321


Q ss_pred             CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD  178 (291)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd  178 (291)
                           +..+....+...+..                                   +.-+|..+..++ +|+.|..|++||
T Consensus       201 -----~i~~n~kvH~~GV~S-----------------------------------I~ss~~~~~~I~-TGsYDe~i~~~D  239 (339)
T KOG0280|consen  201 -----FIWHNSKVHTSGVVS-----------------------------------IYSSPPKPTYIA-TGSYDECIRVLD  239 (339)
T ss_pred             -----eeeecceeeecceEE-----------------------------------EecCCCCCceEE-Eeccccceeeee
Confidence                 111111111111100                                   112233344444 899999999999


Q ss_pred             CCC-cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC-C---ceeecccccc
Q 022870          179 LNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-I---PLTAMKVHLE  253 (291)
Q Consensus       179 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-~---~~~~~~~h~~  253 (291)
                      .|+ ++++..-.             ..+-++.+. ++|... +  .++.++.-.-.+|-+..... +   .....+.|.+
T Consensus       240 tRnm~kPl~~~~-------------v~GGVWRi~-~~p~~~-~--~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdS  302 (339)
T KOG0280|consen  240 TRNMGKPLFKAK-------------VGGGVWRIK-HHPEIF-H--RLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDS  302 (339)
T ss_pred             hhcccCccccCc-------------cccceEEEE-ecchhh-h--HHHHHHHhcCceEEEecccccchheeeeccccccc
Confidence            994 55554333             457889888 998743 2  34555555557777776522 2   2344567777


Q ss_pred             ceeEEEeecCCCeeEEec-CCCeEE-EEEcCCC
Q 022870          254 PVLCLSIDESCNGGISGG-ADQKIV-LYNLDHS  284 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s-~dg~i~-vw~~~~~  284 (291)
                      -...-.|+....+|+|++ .|+.++ +|-.-++
T Consensus       303 l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  303 LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             eeeccccccccceeeeeeccccceeeeeeeccC
Confidence            777778866556788876 477755 8865443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.34  E-value=1.3e-10  Score=86.44  Aligned_cols=260  Identities=16%  Similarity=0.238  Sum_probs=150.9

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-----EEEEEeeecCC----------cceEEEEEeecCCCCeEEE
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSAA----------HGIVSVATGPSIGLNKVIS   81 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~s   81 (291)
                      ..+-|+++.|...|.+|++|...|.|.++.-+...     ....++.|..+          +.|..+.|........++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            35679999999999999999999999999855422     12224444311          3478888876222346777


Q ss_pred             EeCCCeEEEEECCCCCCCC---------------CCcc--------cc----------------ccceEEEEEeecccCc
Q 022870           82 QGRDGTVKCWDIENGGLSS---------------NPSL--------TI----------------KTNSYHFCKLSLVKEP  122 (291)
Q Consensus        82 ~~~dg~i~iwd~~~~~~~~---------------~~~~--------~~----------------~~~~~~~~~~~~~~~~  122 (291)
                      .+.|.+|++|.+.......               .|+.        .+                ..++.+...+++....
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            7889999999986542110               0000        00                1112222222222222


Q ss_pred             cceeccCCCCceeeecccCcc--ccccCCCCCC---------cccCCCCCcEEEEecCCcCeEEEEeCCCccee----eE
Q 022870          123 YANAKQANEPKDCYEREVGET--VDTDSLCDSK---------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC----TR  187 (291)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~----~~  187 (291)
                      ......+......|.+.....  -......|.-         ..|+|....++..+.+ .|.|++-|+|+....    ..
T Consensus       185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS-kG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS-KGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC-CCcEEehhhhhhhhccCchhh
Confidence            233333444444454432211  1111111111         6789988777776655 699999999965321    11


Q ss_pred             ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc------------cce
Q 022870          188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL------------EPV  255 (291)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~------------~~v  255 (291)
                      +.....+............+..+. |+|+   |+ ++++-. --+|++||.+....|+.+..-|.            +.|
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~k-Fs~n---gr-yIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai  337 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFK-FSDN---GR-YILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI  337 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceE-EcCC---Cc-EEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence            111000000011122344566777 9987   55 665543 45899999998778888775553            233


Q ss_pred             ---eEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          256 ---LCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       256 ---~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                         ..+.|+.+...+.+||..+..-++-..+
T Consensus       338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             eeeEEEEecCCcccccccccccceeeecccc
Confidence               3577899999999999988888887543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.33  E-value=1.5e-10  Score=87.00  Aligned_cols=252  Identities=15%  Similarity=0.200  Sum_probs=152.7

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeC-CCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      ..+..++||.+.|+....-|...-+++.+.|.++|||-- +.++.-..+. |.-+.+++++.+.+  +...|+.|-..|+
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~--e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVS--ESRRLYVGQDNGT   91 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeec--cceEEEEEEecce
Confidence            457889999999999998887778999999999999953 3344333332 44447799999999  8889999999999


Q ss_pred             EEEEECCCCCCCCCC--ccccccceEEEEEeecccCccceeccCCCCceeee-cccCccccc-cCCCCCCcccCCCCCcE
Q 022870           88 VKCWDIENGGLSSNP--SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYE-REVGETVDT-DSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        88 i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~  163 (291)
                      +.-+.+...--....  ....+........++.......  ...-...-.|. .+....... .+..   .+-.++-...
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~--s~~~dk~~~~hc~e~~~~lg~Y~~~~---~~t~~~~d~~  166 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVL--STGKDKQFAWHCTESGNRLGGYNFET---PASALQFDAL  166 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEE--EeccccceEEEeeccCCcccceEeec---cCCCCceeeE
Confidence            998876532111000  1111111111111111111100  00000000010 000000000 0000   0000111111


Q ss_pred             EEEecCCcCeEEEEeCCCc--ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          164 MAVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                      .+..|...|.|.+-.+...  .++.++.        +|    .+.+.++. |.|..   + .|.+|..|..+.+||+--.
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~--------~h----~~~~~~l~-Wd~~~---~-~LfSg~~d~~vi~wdigg~  229 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGCQLITTFN--------GH----TGEVTCLK-WDPGQ---R-LLFSGASDHSVIMWDIGGR  229 (404)
T ss_pred             EEEecccccceEEEEEeecCCceEEEEc--------Cc----ccceEEEE-EcCCC---c-EEEeccccCceEEEeccCC
Confidence            2224555566655544332  3445555        55    45667776 98862   2 8999999999999999864


Q ss_pred             CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      ......+.+|...|..++.-+.-+.|++++.||.|-+|+++-.+
T Consensus       230 ~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  230 KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            55667889999999999998888899999999999999997654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.33  E-value=4.7e-10  Score=84.00  Aligned_cols=101  Identities=11%  Similarity=0.090  Sum_probs=70.8

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                      ++|++|..++..-....-+.+-+||++..+....+..             ...+.+.. |.|..+    .|+.+.....+
T Consensus       324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ-------------k~piraf~-WdP~~p----rL~vctg~srL  385 (447)
T KOG4497|consen  324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ-------------KHPIRAFE-WDPGRP----RLVVCTGKSRL  385 (447)
T ss_pred             eeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh-------------ccceeEEE-eCCCCc----eEEEEcCCceE
Confidence            9999998654433333346699999998776555542             34566666 999754    56666667779


Q ss_pred             EEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC
Q 022870          234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ  274 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  274 (291)
                      ++|...- ...+ ......-.|..++|..+|..++-.+.|.
T Consensus       386 Y~W~psg-~~~V-~vP~~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  386 YFWAPSG-PRVV-GVPKKGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             EEEcCCC-ceEE-ecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence            9999874 3333 2333346799999999999999999885

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1e-09  Score=87.59  Aligned_cols=238  Identities=16%  Similarity=0.221  Sum_probs=142.3

Q ss_pred             eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEE-----EeCCCeEEEEECCCC
Q 022870           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-----QGRDGTVKCWDIENG   96 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~   96 (291)
                      ++..|++|..+.| --..+.+.+|+..+.+... -+.|.  ..|..+.++|......+++     .|.-+.|+||.....
T Consensus       129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~-~kl~~--~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~  204 (566)
T KOG2315|consen  129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ-HKLSV--SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE  204 (566)
T ss_pred             cccccccchhhhh-hhhcceEEEEecCCcccee-eeeec--cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence            5788888774433 3345689999987643322 22344  4489999998322234442     455668999998732


Q ss_pred             CCCCCCcc--ccccceEEEEEeecccCc-----------cceeccCCCCceeeecccCccccccCCCCCC---cccCCCC
Q 022870           97 GLSSNPSL--TIKTNSYHFCKLSLVKEP-----------YANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEG  160 (291)
Q Consensus        97 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  160 (291)
                      ..-. ++-  ++.........+......           ..........+..+.++ +......+.....   +.|+|++
T Consensus       205 ~~~~-~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~  282 (566)
T KOG2315|consen  205 GQHQ-PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSG  282 (566)
T ss_pred             cccc-hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCC
Confidence            2111 110  111111111111111111           11111222233334444 2222223332222   8999999


Q ss_pred             CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC--CCcEEEEEc
Q 022870          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE--DGSILVWDI  238 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~--dg~i~vwd~  238 (291)
                      ..+.++-|..-..+.+||++ +.++..+..              +.-.++- |+|.   |+..+++|-.  -|.|.|||+
T Consensus       283 ~EF~VvyGfMPAkvtifnlr-~~~v~df~e--------------gpRN~~~-fnp~---g~ii~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  283 REFAVVYGFMPAKVTIFNLR-GKPVFDFPE--------------GPRNTAF-FNPH---GNIILLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             CEEEEEEecccceEEEEcCC-CCEeEeCCC--------------CCccceE-ECCC---CCEEEEeecCCCCCceEEEec
Confidence            99999999999999999997 556776652              2333443 9998   6534444433  489999999


Q ss_pred             cCCCCceeeccccccceeEEEeecCCCeeEEecC------CCeEEEEEcCCCcee
Q 022870          239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA------DQKIVLYNLDHSTVS  287 (291)
Q Consensus       239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------dg~i~vw~~~~~~~~  287 (291)
                      .+ .+.+..+..-  .-+-+.|+|||.+++|+..      |+.++||++....+.
T Consensus       344 ~n-~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~  395 (566)
T KOG2315|consen  344 PN-RKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH  395 (566)
T ss_pred             cc-hhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence            98 8888888753  3456789999999988764      788999999876554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.31  E-value=5.9e-10  Score=91.95  Aligned_cols=180  Identities=15%  Similarity=0.102  Sum_probs=111.9

Q ss_pred             CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC---CeEEEEECCCCCCCCCCccccccceEEEEE
Q 022870           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCK  115 (291)
Q Consensus        39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
                      ...|.++|....+ ...+..+.  ..+.+.+|+|  +|++|+.+..+   ..|++||+.+++...  +.........   
T Consensus       169 ~~~l~~~d~~g~~-~~~l~~~~--~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g~~~~--~~~~~~~~~~---  238 (417)
T TIGR02800       169 RYELQVADYDGAN-PQTITRSR--EPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATGQREK--VASFPGMNGA---  238 (417)
T ss_pred             cceEEEEcCCCCC-CEEeecCC--CceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCCCEEE--eecCCCCccc---
Confidence            3468888875443 34444444  3489999999  99998876643   479999998764311  1001000000   


Q ss_pred             eecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC-CcCeEEEEeCCCcceeeEecccccC
Q 022870          116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCG  194 (291)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~i~~wd~~~~~~~~~~~~~~~~  194 (291)
                                                            .+|+|+|+.++++... .+..|++||+.+++.. .+.     
T Consensus       239 --------------------------------------~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~-----  274 (417)
T TIGR02800       239 --------------------------------------PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT-----  274 (417)
T ss_pred             --------------------------------------eEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECC-----
Confidence                                                  4599999877654322 2345899999876543 332     


Q ss_pred             CCCCCCCCcceeeeeEEEecCCCCCCceEEE-eecCCC--cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec
Q 022870          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL-AGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG  271 (291)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~-~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  271 (291)
                         .+..    ...... |+|+   |+ .|+ +...++  .|+++|+.+ ++ ...+..+...+....|+|++++|+.++
T Consensus       275 ---~~~~----~~~~~~-~s~d---g~-~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~i~~~~  340 (417)
T TIGR02800       275 ---NGPG----IDTEPS-WSPD---GK-SIAFTSDRGGSPQIYMMDADG-GE-VRRLTFRGGYNASPSWSPDGDLIAFVH  340 (417)
T ss_pred             ---CCCC----CCCCEE-ECCC---CC-EEEEEECCCCCceEEEEECCC-CC-EEEeecCCCCccCeEECCCCCEEEEEE
Confidence               1211    122334 9987   55 454 443344  588888775 33 344444556678889999999998888


Q ss_pred             CCC---eEEEEEcCCCce
Q 022870          272 ADQ---KIVLYNLDHSTV  286 (291)
Q Consensus       272 ~dg---~i~vw~~~~~~~  286 (291)
                      .++   .|.+||+.++..
T Consensus       341 ~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       341 REGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             ccCCceEEEEEeCCCCCe
Confidence            776   799999887543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.29  E-value=8.3e-10  Score=88.54  Aligned_cols=194  Identities=16%  Similarity=0.151  Sum_probs=129.4

Q ss_pred             CCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC-CcceEEEEEe------e------------cCCCCeEEEEeCCCeE
Q 022870           28 QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATG------P------------SIGLNKVISQGRDGTV   88 (291)
Q Consensus        28 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~------~------------~~~~~~l~s~~~dg~i   88 (291)
                      |...++|....||.+++||..+++....+....+ .+..++..|.      |            ..+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567899999999999999998887766643211 1224444442      2            1133467778888999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      .+|++..++...  .+.-..+......                                      +.++.+ -..+- ++
T Consensus        83 ~~ys~~~g~it~--~~st~~h~~~v~~--------------------------------------~~~~~~-~~ciy-S~  120 (541)
T KOG4547|consen   83 LLYSVAGGEITA--KLSTDKHYGNVNE--------------------------------------ILDAQR-LGCIY-SV  120 (541)
T ss_pred             EEEEecCCeEEE--EEecCCCCCccee--------------------------------------eecccc-cCceE-ec
Confidence            999998886533  1111111111110                                      112222 23344 56


Q ss_pred             CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      +.|+.+..|+....+.+..+..            ....+.+++ ++|+   |. .+++++  +.|.+||+++ .+.+..|
T Consensus       121 ~ad~~v~~~~~~~~~~~~~~~~------------~~~~~~sl~-is~D---~~-~l~~as--~~ik~~~~~~-kevv~~f  180 (541)
T KOG4547|consen  121 GADLKVVYILEKEKVIIRIWKE------------QKPLVSSLC-ISPD---GK-ILLTAS--RQIKVLDIET-KEVVITF  180 (541)
T ss_pred             CCceeEEEEecccceeeeeecc------------CCCccceEE-EcCC---CC-EEEecc--ceEEEEEccC-ceEEEEe
Confidence            6699999999999988887773            233455665 9998   44 787775  5799999999 8999999


Q ss_pred             cccccceeEEEeecC-----CCeeEE-ecCCCeEEEEEcCC
Q 022870          249 KVHLEPVLCLSIDES-----CNGGIS-GGADQKIVLYNLDH  283 (291)
Q Consensus       249 ~~h~~~v~~~~~~~~-----~~~l~s-~s~dg~i~vw~~~~  283 (291)
                      .+|.++|.+++|-.+     |.++.+ ...+.-+.+|-++.
T Consensus       181 tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  181 TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999999999554     555554 44566688887765

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=3.3e-11  Score=94.31  Aligned_cols=226  Identities=15%  Similarity=0.115  Sum_probs=123.6

Q ss_pred             EEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCcc-ceeccCCC
Q 022870           53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANE  131 (291)
Q Consensus        53 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  131 (291)
                      ...+..|.+.  |..+.|+.  .|..|++|+.|..|.+||+...+.... ....+........|-+..... .......+
T Consensus       135 ~~kL~~H~Gc--VntV~FN~--~Gd~l~SgSDD~~vv~WdW~~~~~~l~-f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg  209 (559)
T KOG1334|consen  135 QKKLNKHKGC--VNTVHFNQ--RGDVLASGSDDLQVVVWDWVSGSPKLS-FESGHCNNVFQAKFIPFSGDRTIVTSSRDG  209 (559)
T ss_pred             hhcccCCCCc--cceeeecc--cCceeeccCccceEEeehhhccCcccc-cccccccchhhhhccCCCCCcCceeccccC
Confidence            3445677755  99999999  899999999999999999987754321 001111111111111111110 11111111


Q ss_pred             Cceeee-cccCccc-cccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccC-----------
Q 022870          132 PKDCYE-REVGETV-DTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG-----------  194 (291)
Q Consensus       132 ~~~~~~-~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~-----------  194 (291)
                      ....-. +..+... ...+..|..    ++.-|+.++-|.++| .|+.+.-+|++...+...+....-.           
T Consensus       210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~g-eD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCG-EDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             ceeeeeeccccceecceecccccCccceeeecCCCCCcccccc-cccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence            111111 1222222 222333333    888898888888555 5999999999876554333211000           


Q ss_pred             --CC--------------------CCCCCCcce----------------eeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870          195 --GS--------------------PNFSSKGRG----------------MCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (291)
Q Consensus       195 --~~--------------------~~~~~~~~~----------------~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (291)
                        +.                    ..+....++                .++++. |+.++.    -|++...|-.|+++
T Consensus       289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~-Ysh~~s----ElLaSYnDe~IYLF  363 (559)
T KOG1334|consen  289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV-YSHDGS----ELLASYNDEDIYLF  363 (559)
T ss_pred             cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE-ecCCcc----ceeeeecccceEEe
Confidence              00                    000000111                123343 444321    34455555566666


Q ss_pred             EccCC-C----------Cceee-cccccc--ceeEEEe-ecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          237 DIRNP-G----------IPLTA-MKVHLE--PVLCLSI-DESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       237 d~~~~-~----------~~~~~-~~~h~~--~v~~~~~-~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      ..... +          ..+.. +++|..  .|.++.| -|...|+++||.-|.|.||+-.++++++-
T Consensus       364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~  431 (559)
T KOG1334|consen  364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF  431 (559)
T ss_pred             ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence            33210 1          11222 677754  5888887 78899999999999999999999988754

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=2.9e-09  Score=85.08  Aligned_cols=241  Identities=11%  Similarity=0.132  Sum_probs=141.3

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEE-----EeCC-----Ce
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-----QGRD-----GT   87 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-----~~~d-----g~   87 (291)
                      ..+++..+++++|+++|.+ .+..++|++......+.+....  .  +.++.|+|  .+++|.+     ...+     -.
T Consensus        34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~--~~~L~fSP--~g~yL~T~e~~~i~~~~~~~~pn  106 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--K--TYDLLFSP--KGNYLLTWEPWAIYGPKNASNPN  106 (566)
T ss_pred             CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--e--eeeeeecc--cccccccccccccccCCCCCCCc
Confidence            4457889999999877765 4568999998888655544433  2  89999999  7787765     1222     34


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCC------------------
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL------------------  149 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  149 (291)
                      +++|+++++..........+.  .....++.+.  ...+...+.....++....+.+...+.                  
T Consensus       107 ~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~v  182 (566)
T KOG2315|consen  107 VLVYNVETGVQRSQIQKKMQN--GWVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFV  182 (566)
T ss_pred             eeeeeeccceehhheehhhhc--Ccccccccch--hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceE
Confidence            779999884322110001110  0000010000  000011111111111111111110000                  


Q ss_pred             ----------------------------------CCCC--cccCCCCCcEEEEec-CC---------cCeEEEEeCCCcc
Q 022870          150 ----------------------------------CDSK--DDVPAEGPKYMAVAG-EQ---------LSEVEIWDLNTAE  183 (291)
Q Consensus       150 ----------------------------------~~~~--~~~~~~~~~~~~~~g-~~---------d~~i~~wd~~~~~  183 (291)
                                                        ....  +.|++-|.-+|+.+. .-         +.+++++++....
T Consensus       183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s  262 (566)
T KOG2315|consen  183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES  262 (566)
T ss_pred             EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence                                              0000  555555555444332 11         2356666666444


Q ss_pred             eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecC
Q 022870          184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES  263 (291)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~  263 (291)
                      +...+.             ..+++.++. |+|++.  +..++-|.+=-.+.|||++  +.++..+.  .++=+++-|+|.
T Consensus       263 ~~V~L~-------------k~GPVhdv~-W~~s~~--EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~  322 (566)
T KOG2315|consen  263 VSVPLL-------------KEGPVHDVT-WSPSGR--EFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPH  322 (566)
T ss_pred             EEEecC-------------CCCCceEEE-ECCCCC--EEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCC
Confidence            444444             478899998 999843  2245567778899999999  78887775  577889999999


Q ss_pred             CCeeEEecCC---CeEEEEEcCCCceeee
Q 022870          264 CNGGISGGAD---QKIVLYNLDHSTVSHC  289 (291)
Q Consensus       264 ~~~l~s~s~d---g~i~vw~~~~~~~~~~  289 (291)
                      |++|+.+|.+   |.|-|||+.+.+++-+
T Consensus       323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~  351 (566)
T KOG2315|consen  323 GNIILLAGFGNLPGDMEVWDVPNRKLIAK  351 (566)
T ss_pred             CCEEEEeecCCCCCceEEEeccchhhccc
Confidence            9999888765   7899999999877643

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.25  E-value=1.1e-09  Score=82.54  Aligned_cols=195  Identities=15%  Similarity=0.195  Sum_probs=117.3

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCC----CCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTV----QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~   93 (291)
                      ..+++++.+.++...|+.|-..|++.-+.+.    +...++....|..  +|..+-|+.  ....+++.+.|..+.---.
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~--~v~~~if~~--~~e~V~s~~~dk~~~~hc~  143 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQA--RVSAIVFSL--THEWVLSTGKDKQFAWHCT  143 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhc--ceeeEEecC--CceeEEEeccccceEEEee
Confidence            5678999999999999999999999888654    3344555556774  499999987  6689999999988764444


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc-cccccCCCCCC----cccCCCCCcEEEEec
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDSK----DDVPAEGPKYMAVAG  168 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~g  168 (291)
                      +.+..+..-.+........... .     ........+.+....+.... .....+.+|..    ++|.+....++  +|
T Consensus       144 e~~~~lg~Y~~~~~~t~~~~d~-~-----~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~Lf--Sg  215 (404)
T KOG1409|consen  144 ESGNRLGGYNFETPASALQFDA-L-----YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLF--SG  215 (404)
T ss_pred             ccCCcccceEeeccCCCCceee-E-----EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEE--ec
Confidence            4443322111111111000000 0     11111222222233332222 33344555655    67777765554  78


Q ss_pred             CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      ..|..+.+||+--.+-..-...       +|......    +. +.+.   -+ .+.+++.||.|.+||++.
T Consensus       216 ~~d~~vi~wdigg~~g~~~el~-------gh~~kV~~----l~-~~~~---t~-~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  216 ASDHSVIMWDIGGRKGTAYELQ-------GHNDKVQA----LS-YAQH---TR-QLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             cccCceEEEeccCCcceeeeec-------cchhhhhh----hh-hhhh---he-eeeeccCCCeEEEEeccc
Confidence            8899999999976553332221       56443333    22 3332   22 799999999999999875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.24  E-value=2.6e-11  Score=63.75  Aligned_cols=38  Identities=29%  Similarity=0.711  Sum_probs=36.4

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEe
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD   46 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd   46 (291)
                      ++++++++|.++|++|+|+|++.+|++|+.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.23  E-value=2.1e-10  Score=87.79  Aligned_cols=80  Identities=18%  Similarity=0.215  Sum_probs=67.0

Q ss_pred             ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee-ccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      -.+++.++ ++||+   + +|+++..|..|+|-.... ...+.. +-||..-|..++.-++.. |+|+|.|+++++||+.
T Consensus       151 vSml~dVa-vS~D~---~-~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  151 VSMLLDVA-VSPDD---Q-FIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT  223 (390)
T ss_pred             hhhhheee-ecCCC---C-EEEEecCCceEEEEecCc-ccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence            56888887 99984   4 999999999999988876 344444 457999999999977754 8999999999999999


Q ss_pred             CCceeeee
Q 022870          283 HSTVSHCV  290 (291)
Q Consensus       283 ~~~~~~~~  290 (291)
                      +++.++++
T Consensus       224 sgk~L~t~  231 (390)
T KOG3914|consen  224 SGKLLDTC  231 (390)
T ss_pred             cCCccccc
Confidence            99998764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.23  E-value=2.8e-10  Score=82.41  Aligned_cols=73  Identities=19%  Similarity=0.309  Sum_probs=62.1

Q ss_pred             eeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeec-CCCeeEEecCCCeEEEEEcCC
Q 022870          207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      +.+++ -+|.   .++.+++|++||.+-+||.++...+...++.|+.+++.+-|+| ++..|+++++||.+-.||..+
T Consensus       182 v~~l~-~hp~---qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  182 VTALC-SHPA---QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             chhhh-CCcc---cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            55554 6776   3348999999999999999997778888999999999999977 455799999999999999875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=3.5e-09  Score=87.55  Aligned_cols=178  Identities=16%  Similarity=0.103  Sum_probs=103.4

Q ss_pred             eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CC--eEEEEECCCCCCCCCCccccccceEEEEEee
Q 022870           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (291)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (291)
                      .+.++|....+. +.+....  .++.+..|+|  ||+.|+..+. ++  .|.+||+.+++...  +........      
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~--~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt~~~g~~~------  265 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSP--EPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQVREK--VTSFPGING------  265 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCC--CcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCCeEE--ecCCCCCcC------
Confidence            677778755443 3343344  4589999999  9998886543 33  58888988764311  111110000      


Q ss_pred             cccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC--eEEEEeCCCcceeeEecccccCC
Q 022870          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGG  195 (291)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~~~  195 (291)
                                                         ..+|+|+|+.++++ .+.++  .|+++|+.+++.. .+.      
T Consensus       266 -----------------------------------~~~wSPDG~~La~~-~~~~g~~~Iy~~dl~tg~~~-~lt------  302 (448)
T PRK04792        266 -----------------------------------APRFSPDGKKLALV-LSKDGQPEIYVVDIATKALT-RIT------  302 (448)
T ss_pred             -----------------------------------CeeECCCCCEEEEE-EeCCCCeEEEEEECCCCCeE-ECc------
Confidence                                               04599999887664 33455  4888898877543 333      


Q ss_pred             CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC--cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecC-
Q 022870          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-  272 (291)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-  272 (291)
                        .+.    ....... |+|+   |+.++++...++  .|+++|+.+ ++. ..+..........+|+|+|++|+..+. 
T Consensus       303 --~~~----~~~~~p~-wSpD---G~~I~f~s~~~g~~~Iy~~dl~~-g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~  370 (448)
T PRK04792        303 --RHR----AIDTEPS-WHPD---GKSLIFTSERGGKPQIYRVNLAS-GKV-SRLTFEGEQNLGGSITPDGRSMIMVNRT  370 (448)
T ss_pred             --cCC----CCccceE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCE-EEEecCCCCCcCeeECCCCCEEEEEEec
Confidence              111    1223344 9998   542444444444  466667765 433 233222233445789999999876654 


Q ss_pred             CC--eEEEEEcCCCce
Q 022870          273 DQ--KIVLYNLDHSTV  286 (291)
Q Consensus       273 dg--~i~vw~~~~~~~  286 (291)
                      ++  .|.++|+.+++.
T Consensus       371 ~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        371 NGKFNIARQDLETGAM  386 (448)
T ss_pred             CCceEEEEEECCCCCe
Confidence            34  456678777754

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.22  E-value=1.2e-09  Score=93.15  Aligned_cols=104  Identities=16%  Similarity=0.228  Sum_probs=82.0

Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                      +.+.+|+.-+.|.+|+....+....+.        +|    .+.+.++. |+-+   |+ ++++.++|..+|+|++.+..
T Consensus       146 ~~i~~gsv~~~iivW~~~~dn~p~~l~--------GH----eG~iF~i~-~s~d---g~-~i~s~SdDRsiRlW~i~s~~  208 (967)
T KOG0974|consen  146 LYIASGSVFGEIIVWKPHEDNKPIRLK--------GH----EGSIFSIV-TSLD---GR-YIASVSDDRSIRLWPIDSRE  208 (967)
T ss_pred             EEEEeccccccEEEEeccccCCcceec--------cc----CCceEEEE-EccC---Cc-EEEEEecCcceeeeeccccc
Confidence            444467777999999987333333344        66    66788887 8877   55 99999999999999999844


Q ss_pred             CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      ......-+|.+.|+.++|+|+  .++|++.|-+.++|+.+..+
T Consensus       209 ~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~  249 (967)
T KOG0974|consen  209 VLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ  249 (967)
T ss_pred             ccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce
Confidence            444477789999999999999  89999999999999665443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.21  E-value=2.3e-10  Score=94.30  Aligned_cols=216  Identities=18%  Similarity=0.246  Sum_probs=135.5

Q ss_pred             CCCceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCC-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      .......+.||...|+.+-|+| ....+++++.|..|..||+.+. ..+..+....  ..-..++|+-. +++. ++.+.
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~--s~asqVkwnyk-~p~v-lassh  178 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR--SAASQVKWNYK-DPNV-LASSH  178 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc--ccCceeeeccc-Ccch-hhhcc
Confidence            3355678899999999999999 4568899999999999999875 3444444433  33688999873 4344 44455


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      ...|++||.+.+..   |...++.+.....  .                                    ++|...-...+
T Consensus       179 g~~i~vwd~r~gs~---pl~s~K~~vs~vn--~------------------------------------~~fnr~~~s~~  217 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGST---PLCSLKGHVSSVN--S------------------------------------IDFNRFKYSEI  217 (1081)
T ss_pred             CCceEEEeccCCCc---ceEEecccceeee--h------------------------------------HHHhhhhhhhh
Confidence            56899999998763   2333433211111  0                                    22332222223


Q ss_pred             EEecCCcCeEEEEeCCCccee--eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec---------CCCcE
Q 022870          165 AVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---------EDGSI  233 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---------~dg~i  233 (291)
                      . +.+.|++|+.||.......  ....             ...+++.-. |-|-+. |. ++.---         .+...
T Consensus       218 ~-s~~~d~tvkfw~y~kSt~e~~~~vt-------------t~~piw~~r-~~Pfg~-g~-~~mp~~G~n~v~~~~c~n~d  280 (1081)
T KOG0309|consen  218 M-SSSNDGTVKFWDYSKSTTESKRTVT-------------TNFPIWRGR-YLPFGE-GY-CIMPMVGGNMVPQLRCENSD  280 (1081)
T ss_pred             c-ccCCCCceeeecccccccccceecc-------------ccCcceecc-ccccCc-ee-EeccccCCeeeeeccccchh
Confidence            3 5667999999998754322  2222             122333333 666532 33 222111         12223


Q ss_pred             EEEEccCCCCceeeccccccceeEEEeec----------CCCeeEEecCCCeEEEEEcCCC
Q 022870          234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDE----------SCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~----------~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      ..|+..+..++++.+.||.+.|....|-.          ..-.|+|-|.|..+++|-+.+.
T Consensus       281 ~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  281 LEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             hhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            34555555688999999999998887721          2236899999999999998753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.19  E-value=2.3e-08  Score=90.39  Aligned_cols=227  Identities=14%  Similarity=0.061  Sum_probs=131.6

Q ss_pred             eeEEEEcCCCCEEEEe-cCCCeEEEEeCCCCeEEEEEeeec--------C-------CcceEEEEEeecCCC-CeEEEEe
Q 022870           21 VTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHS--------A-------AHGIVSVATGPSIGL-NKVISQG   83 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~--------~-------~~~v~~~~~~~~~~~-~~l~s~~   83 (291)
                      -..+++++++..|+.+ ..++.|+++|..++. +.++.+..        .       -..-..++++|  ++ ..+++.+
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp--~~g~LyVad~  702 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEP--VNEKVYIAMA  702 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEec--CCCeEEEEEC
Confidence            4778899887765554 456789999987654 33332110        0       01136789998  44 4556667


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                      .++.|++||..++...     .+..... ..                      ...........+..-..++++|++..+
T Consensus       703 ~~~~I~v~d~~~g~v~-----~~~G~G~-~~----------------------~~~g~~~~~~~~~~P~GIavspdG~~L  754 (1057)
T PLN02919        703 GQHQIWEYNISDGVTR-----VFSGDGY-ER----------------------NLNGSSGTSTSFAQPSGISLSPDLKEL  754 (1057)
T ss_pred             CCCeEEEEECCCCeEE-----EEecCCc-cc----------------------cCCCCccccccccCccEEEEeCCCCEE
Confidence            7889999998765321     0000000 00                      000000000001111118899999877


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecc-----cccCCCCCCCC----CcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQ-----NSCGGSPNFSS----KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (291)
                      ++ +.+.++.|++||+.++........     ...........    ..-.....+. +.++   |. ++++-..++.|+
T Consensus       755 YV-ADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva-vd~d---G~-LYVADs~N~rIr  828 (1057)
T PLN02919        755 YI-ADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL-CAKD---GQ-IYVADSYNHKIK  828 (1057)
T ss_pred             EE-EECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee-EeCC---Cc-EEEEECCCCEEE
Confidence            66 455578999999987653211100     00000000000    0011234555 8877   54 778888899999


Q ss_pred             EEEccCCCCceeeccc--------------cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          235 VWDIRNPGIPLTAMKV--------------HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       235 vwd~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      +||..+ +... .+.+              .-....+|+++++|+++++-+.++.|++||+++++.
T Consensus       829 viD~~t-g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        829 KLDPAT-KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEECCC-CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            999986 4332 2221              123578999999999999999999999999999875

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.19  E-value=1.1e-08  Score=75.69  Aligned_cols=206  Identities=14%  Similarity=0.131  Sum_probs=126.1

Q ss_pred             ccceeEEEEcC---CCC-EEEEecCCCeEEEEeCCCCeEEEEEeeecC---C-cceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           18 RASVTDVCFHQ---TKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSA---A-HGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        18 ~~~v~~l~~~~---~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---~-~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      ++.+..+.|..   +|. .++-+-.+|.|.++..........+++-..   . ....++.|++  .+..++++..+|.+.
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~~  146 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSIS  146 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeec--cCceEEEEcCCCcEE
Confidence            34566666664   444 456667788888887654443333332211   0 1145778888  778899999999998


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (291)
                      +-+.....+..  ..+.+.+......                                      ..|+...++++. +|+
T Consensus       147 ~v~~t~~~le~--vq~wk~He~E~Wt--------------------------------------a~f~~~~pnlvy-tGg  185 (339)
T KOG0280|consen  147 GVYETEMVLEK--VQTWKVHEFEAWT--------------------------------------AKFSDKEPNLVY-TGG  185 (339)
T ss_pred             EEecceeeeee--cccccccceeeee--------------------------------------eecccCCCceEE-ecC
Confidence            65554443322  2233333332221                                      235555556655 788


Q ss_pred             CcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          170 QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       170 ~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      .|+.+..||+|..+ .+..           +...+..-+.++. -+|.  .+. +|++|+.|-.|++||.|+.++|+..-
T Consensus       186 DD~~l~~~D~R~p~~~i~~-----------n~kvH~~GV~SI~-ss~~--~~~-~I~TGsYDe~i~~~DtRnm~kPl~~~  250 (339)
T KOG0280|consen  186 DDGSLSCWDIRIPKTFIWH-----------NSKVHTSGVVSIY-SSPP--KPT-YIATGSYDECIRVLDTRNMGKPLFKA  250 (339)
T ss_pred             CCceEEEEEecCCcceeee-----------cceeeecceEEEe-cCCC--CCc-eEEEeccccceeeeehhcccCccccC
Confidence            89999999999433 2222           2222344566665 5554  244 99999999999999999888888765


Q ss_pred             cccccceeEEEeecCC--CeeEEecCCCeEEEEEcCC
Q 022870          249 KVHLEPVLCLSIDESC--NGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       249 ~~h~~~v~~~~~~~~~--~~l~s~s~dg~i~vw~~~~  283 (291)
                      .. .+.|+.+.++|.-  ++|+++=..| .+|-+.+.
T Consensus       251 ~v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~  285 (339)
T KOG0280|consen  251 KV-GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD  285 (339)
T ss_pred             cc-ccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence            54 4789999997742  2333333333 44444443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=9.9e-09  Score=84.97  Aligned_cols=178  Identities=12%  Similarity=0.079  Sum_probs=106.7

Q ss_pred             eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC---CeEEEEECCCCCCCCCCccccccceEEEEEee
Q 022870           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (291)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (291)
                      .|.++|.+.++. ..+..+.  .++.+..|+|  ||+.|+..+.+   ..|.+||+.+++...  +........      
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~--~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~g~~~------  246 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSR--EPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFEGLNG------  246 (430)
T ss_pred             EEEEECCCCCCc-eEEecCC--CceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCCCCcC------
Confidence            577888765443 4444444  4489999999  99988766543   368899998765321  111110000      


Q ss_pred             cccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC--eEEEEeCCCcceeeEecccccCC
Q 022870          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGG  195 (291)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~~~  195 (291)
                                                         ..+|+|+|+.++++. +.++  .|++||+.+++.. .+.      
T Consensus       247 -----------------------------------~~~~SpDG~~la~~~-~~~g~~~Iy~~d~~~~~~~-~lt------  283 (430)
T PRK00178        247 -----------------------------------APAWSPDGSKLAFVL-SKDGNPEIYVMDLASRQLS-RVT------  283 (430)
T ss_pred             -----------------------------------CeEECCCCCEEEEEE-ccCCCceEEEEECCCCCeE-Ecc------
Confidence                                               045999998876543 2233  6888899887643 333      


Q ss_pred             CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC--cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC
Q 022870          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD  273 (291)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  273 (291)
                        .+.    ....... |+|+   |+.++++...+|  .|+++|+.+ ++. ..+...........|+|+++.|+..+.+
T Consensus       284 --~~~----~~~~~~~-~spD---g~~i~f~s~~~g~~~iy~~d~~~-g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~  351 (430)
T PRK00178        284 --NHP----AIDTEPF-WGKD---GRTLYFTSDRGGKPQIYKVNVNG-GRA-ERVTFVGNYNARPRLSADGKTLVMVHRQ  351 (430)
T ss_pred             --cCC----CCcCCeE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCE-EEeecCCCCccceEECCCCCEEEEEEcc
Confidence              121    1223344 9998   442444444444  577778776 443 2222222333457899999999776643


Q ss_pred             -C--eEEEEEcCCCce
Q 022870          274 -Q--KIVLYNLDHSTV  286 (291)
Q Consensus       274 -g--~i~vw~~~~~~~  286 (291)
                       +  .|.+||+.+++.
T Consensus       352 ~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        352 DGNFHVAAQDLQRGSV  367 (430)
T ss_pred             CCceEEEEEECCCCCE
Confidence             3  588899988754

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=5.2e-11  Score=100.00  Aligned_cols=216  Identities=16%  Similarity=0.235  Sum_probs=141.2

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC--
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--   86 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--   86 (291)
                      ++.++++.|+...+|++|+.+.+.|+.|+..|.|+++++.+|.......+|..+  |+-+.-+.  +|..+++.+.-.  
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa--vT~vePs~--dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA--VTLVEPSV--DGSTQLTSSSSSSP 1167 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccc--cccccccC--CcceeeeeccccCc
Confidence            456788899999999999999999999999999999999999999999999955  99998888  888777655433  


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-------cccCCC
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-------DDVPAE  159 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  159 (291)
                      -..+|++...-.   +.-++...  ....|+-. .........+....+|+++........+.+...       ..|+|+
T Consensus      1168 lsaLW~~~s~~~---~~Hsf~ed--~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1168 LSALWDASSTGG---PRHSFDED--KAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred             hHHHhccccccC---cccccccc--ceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence            478999875211   11111111  11112111 111222333455677888877765553333211       789999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      ...++     .||  .+||.+..+.++.|.        .+.....+      .|+|.+   . .++.-+     .|||++
T Consensus      1242 D~LIl-----ndG--vLWDvR~~~aIh~FD--------~ft~~~~G------~FHP~g---~-eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1242 DTLIL-----NDG--VLWDVRIPEAIHRFD--------QFTDYGGG------GFHPSG---N-EVIINS-----EIWDMR 1291 (1516)
T ss_pred             cceEe-----eCc--eeeeeccHHHHhhhh--------hheecccc------cccCCC---c-eEEeec-----hhhhhH
Confidence            86444     355  479999988888776        23222222      399984   3 555554     399999


Q ss_pred             CCCCceeeccccccceeEEEeecCCCee
Q 022870          240 NPGIPLTAMKVHLEPVLCLSIDESCNGG  267 (291)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l  267 (291)
                      + .+.++....-.  =..+.|+..|..+
T Consensus      1292 T-F~lLh~VP~Ld--qc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1292 T-FKLLHSVPSLD--QCAVTFNSTGDVM 1316 (1516)
T ss_pred             H-HHHHhcCcccc--ceEEEeccCccch
Confidence            8 66665554322  2355666666544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.13  E-value=3.4e-10  Score=93.36  Aligned_cols=209  Identities=18%  Similarity=0.266  Sum_probs=136.8

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      .+++.++..+|.|+-+|.++.-| +.+-|+... ...+-+ .|..+-.|-.+.|+|.....+-++......-.+|++...
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            56788999999999999998877 556676653 333322 243333477888888434345444444444557988754


Q ss_pred             CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  176 (291)
                      .... ..+-++.+.....                                      ++.|+|+.+.+++ +++.|-.+..
T Consensus       102 s~~a-Ief~lhghsrait--------------------------------------d~n~~~q~pdVla-tcsvdt~vh~  141 (1081)
T KOG0309|consen  102 SSNA-IEFVLHGHSRAIT--------------------------------------DINFNPQHPDVLA-TCSVDTYVHA  141 (1081)
T ss_pred             Cccc-eEEEEecCcccee--------------------------------------ccccCCCCCccee-ecccccccee
Confidence            3211 0111111111000                                      0558898888777 6777999999


Q ss_pred             EeCCCcceee-EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccce
Q 022870          177 WDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV  255 (291)
Q Consensus       177 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v  255 (291)
                      ||+++..... .+..       -     ......++ |+-..+    .+.+.+....|++||++.++.++..+++|...|
T Consensus       142 wd~rSp~~p~ys~~~-------w-----~s~asqVk-wnyk~p----~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v  204 (1081)
T KOG0309|consen  142 WDMRSPHRPFYSTSS-------W-----RSAASQVK-WNYKDP----NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV  204 (1081)
T ss_pred             eeccCCCcceeeeec-------c-----cccCceee-ecccCc----chhhhccCCceEEEeccCCCcceEEecccceee
Confidence            9999875433 2221       1     12233444 765422    466666777899999999889999999999999


Q ss_pred             eEEEeec-CCCeeEEecCCCeEEEEEcCCCc
Q 022870          256 LCLSIDE-SCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       256 ~~~~~~~-~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      +++.|.. ....+.+++.||+|++||.+...
T Consensus       205 n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  205 NSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             ehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            9999943 33357899999999999987643

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.13  E-value=1e-06  Score=67.31  Aligned_cols=257  Identities=14%  Similarity=0.120  Sum_probs=151.1

Q ss_pred             CCccceeEEEEcCCCCEEEEecC---CCeEEEEeCCC--CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CCeEE
Q 022870           16 GHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVK   89 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~   89 (291)
                      .+.+..+-|+|+|+.+.|+++-.   +|.|..|.++.  |++...-+......+-..+++++  ++++++++.. .|.|.
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~  114 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSGSVS  114 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCceEE
Confidence            35667889999999999988755   47787777664  54432211111113347899999  9889888765 57899


Q ss_pred             EEECCCCCCCCCCccccc-cce----------EEEEEeecccCccceeccCCCCceeeecccCccccc---cC-CCCCC-
Q 022870           90 CWDIENGGLSSNPSLTIK-TNS----------YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT---DS-LCDSK-  153 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~-  153 (291)
                      ++-++....+..++.... ...          .+...+.+........-........+++..+.....   .+ ++... 
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR  194 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR  194 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence            999976433332211111 111          233334444333333333344555566664432211   11 11111 


Q ss_pred             -cccCCCCCcEEEEecCCcCeEEEEeCCCc-ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CC
Q 022870          154 -DDVPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-ED  230 (291)
Q Consensus       154 -~~~~~~~~~~~~~~g~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~d  230 (291)
                       +.|+|+++...+ ....+++|.+|..... ..+..++.....+. .+..  ....-++. .+|+   |+ +|.++. ..
T Consensus       195 Hi~FHpn~k~aY~-v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~-dF~g--~~~~aaIh-is~d---Gr-FLYasNRg~  265 (346)
T COG2706         195 HIVFHPNGKYAYL-VNELNSTVDVLEYNPAVGKFEELQTIDTLPE-DFTG--TNWAAAIH-ISPD---GR-FLYASNRGH  265 (346)
T ss_pred             eEEEcCCCcEEEE-EeccCCEEEEEEEcCCCceEEEeeeeccCcc-ccCC--CCceeEEE-ECCC---CC-EEEEecCCC
Confidence             999999986655 5778999999998874 22222221100000 2222  33455665 8888   66 666654 34


Q ss_pred             CcEEEEEccCCCCceeecc---ccccceeEEEeecCCCeeEEecCC-CeEEEEEcCC
Q 022870          231 GSILVWDIRNPGIPLTAMK---VHLEPVLCLSIDESCNGGISGGAD-QKIVLYNLDH  283 (291)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~d-g~i~vw~~~~  283 (291)
                      ..|.+|.+...+..+..+.   .+........+++.+++|+++..| ..|.+|.++.
T Consensus       266 dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         266 DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            5788888876444333322   334457889999999999988875 4688887764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.12  E-value=1.7e-10  Score=60.56  Aligned_cols=38  Identities=16%  Similarity=0.185  Sum_probs=36.0

Q ss_pred             CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      +++..+.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=4.2e-09  Score=86.93  Aligned_cols=244  Identities=15%  Similarity=0.100  Sum_probs=148.6

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      -++|+||++.|.-+.|+.+.+.|-|...+|.|.+|-+.+++-...+......+-|.+++|+.  +|..+.....||.|.+
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIV  141 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIV  141 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEE
Confidence            46899999999999999999999999999999999998886554444333335699999999  9999999999999988


Q ss_pred             EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccc-------------ccc----CCCC--
Q 022870           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV-------------DTD----SLCD--  151 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~----~~~~--  151 (291)
                      =.++.++.-.+   .++......+.++....... .....+....++.+.....             ...    +.++  
T Consensus       142 GsvdGNRIwgK---eLkg~~l~hv~ws~D~~~~L-f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w  217 (1189)
T KOG2041|consen  142 GSVDGNRIWGK---ELKGQLLAHVLWSEDLEQAL-FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW  217 (1189)
T ss_pred             Eeeccceecch---hcchheccceeecccHHHHH-hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence            77765543221   11111111121221111111 1111122222222211100             000    0000  


Q ss_pred             --CC-cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec
Q 022870          152 --SK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (291)
Q Consensus       152 --~~-~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (291)
                        .. .-.-|+.+.+.  .+..+|.+.+-.-.+......+..             .-.+.... |+|++.    +|+.++
T Consensus       218 ~~g~~~~v~pdrP~la--vcy~nGr~QiMR~eND~~Pvv~dt-------------gm~~vgak-Wnh~G~----vLAvcG  277 (1189)
T KOG2041|consen  218 NTGPYQPVPPDRPRLA--VCYANGRMQIMRSENDPEPVVVDT-------------GMKIVGAK-WNHNGA----VLAVCG  277 (1189)
T ss_pred             ccCccccCCCCCCEEE--EEEcCceehhhhhcCCCCCeEEec-------------ccEeecce-ecCCCc----EEEEcc
Confidence              00 11235655544  344567777665444333333321             22455666 999844    888776


Q ss_pred             CC---------CcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          229 ED---------GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       229 ~d---------g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      .+         +.|.+|..-  +..+..++.....|++++|-..|..++.+ .|+.|.+=+++.
T Consensus       278 ~~~da~~~~d~n~v~Fysp~--G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP  338 (1189)
T KOG2041|consen  278 NDSDADEPTDSNKVHFYSPY--GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP  338 (1189)
T ss_pred             CcccccCccccceEEEeccc--hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence            53         367777765  78888999888999999998888877765 477777665553

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=6.7e-09  Score=83.14  Aligned_cols=242  Identities=14%  Similarity=0.112  Sum_probs=135.3

Q ss_pred             ceeEEEEcCCCCEEEEecC-----------CCeEEEEeCCCCeEEEEEeeecCCcceEE-EEEeecCCCCeEEEEeCCCe
Q 022870           20 SVTDVCFHQTKPILFAGTT-----------GGELRIWDTVQHRTVSSSWVHSAAHGIVS-VATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .|.-+.|||..+||+|=+.           ...++|||+.+|...+.+.....+..++. ..||.  |+.+++--.. .+
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~--DdKy~Arm~~-~s  327 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH--DDKYFARMTG-NS  327 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc--CCceeEEecc-ce
Confidence            4888999999999998653           25799999999999988877443333443 46888  8788876555 46


Q ss_pred             EEEEECCCCCCCCCCcccccc--------ce-----------------------------------EEEEEeecccCccc
Q 022870           88 VKCWDIENGGLSSNPSLTIKT--------NS-----------------------------------YHFCKLSLVKEPYA  124 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~--------~~-----------------------------------~~~~~~~~~~~~~~  124 (291)
                      |.||+.....+.....+.+..        ..                                   ...|.+....+...
T Consensus       328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy  407 (698)
T KOG2314|consen  328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY  407 (698)
T ss_pred             EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence            888876543322110000000        00                                   00000000000000


Q ss_pred             ee-----------ccCCCCceeeecccCccccccCCCCCC---cccCCCCCcEEEEecCC-cCeEEEEeCCCc-c---ee
Q 022870          125 NA-----------KQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQ-LSEVEIWDLNTA-E---RC  185 (291)
Q Consensus       125 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~-d~~i~~wd~~~~-~---~~  185 (291)
                      ..           ...-....++.++..........-...   .+|.|.|+.+.+.+|.. ..++.+|-+++. .   .+
T Consensus       408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV  487 (698)
T KOG2314|consen  408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV  487 (698)
T ss_pred             EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence            00           000000111112221111111111111   67889999887776653 345888887742 1   22


Q ss_pred             eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee---cCCCcEEEEEccCCCCceee-ccccccceeEEEee
Q 022870          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNPGIPLTA-MKVHLEPVLCLSID  261 (291)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~  261 (291)
                      ..+.              ...+..+. |+|.   |+ +++.+   +..|.+.++|+.. ...... ...| -.-+.+.|+
T Consensus       488 k~~d--------------k~~~N~vf-wsPk---G~-fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh-~~at~veWD  546 (698)
T KOG2314|consen  488 KELD--------------KKFANTVF-WSPK---GR-FVVVAALVSRRGDLEFYDTDY-ADLKDTASPEH-FAATEVEWD  546 (698)
T ss_pred             hhhc--------------ccccceEE-EcCC---Cc-EEEEEEecccccceEEEecch-hhhhhccCccc-cccccceEC
Confidence            2222              23456666 9998   66 55554   4579999999874 222211 2223 345789999


Q ss_pred             cCCCeeEEecC------CCeEEEEEcCCCc
Q 022870          262 ESCNGGISGGA------DQKIVLYNLDHST  285 (291)
Q Consensus       262 ~~~~~l~s~s~------dg~i~vw~~~~~~  285 (291)
                      |.|+|+++++.      |.--++|+++..-
T Consensus       547 PtGRYvvT~ss~wrhk~d~GYri~tfqGrl  576 (698)
T KOG2314|consen  547 PTGRYVVTSSSSWRHKVDNGYRIFTFQGRL  576 (698)
T ss_pred             CCCCEEEEeeehhhhccccceEEEEeecHH
Confidence            99999999886      5557888887653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=4.3e-08  Score=75.63  Aligned_cols=83  Identities=19%  Similarity=0.233  Sum_probs=71.1

Q ss_pred             eEEecCCccceeEEEEcCCCC-EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      ...+.+|...|..++|+|..+ ++..++.+..|+|.|+++..++.++..+   .++++++|... +.+.++.|-..|.|.
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~---~~~wSC~wDld-e~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---NQIWSCCWDLD-ERHVIYAGLQNGMVL  261 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc---CCceeeeeccC-CcceeEEeccCceEE
Confidence            445677889999999999655 7888999999999999999999888877   44999999974 357889999999999


Q ss_pred             EEECCCCC
Q 022870           90 CWDIENGG   97 (291)
Q Consensus        90 iwd~~~~~   97 (291)
                      +||++..+
T Consensus       262 vyD~R~~~  269 (463)
T KOG1645|consen  262 VYDMRQPE  269 (463)
T ss_pred             EEEccCCC
Confidence            99998765

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=8.1e-08  Score=78.97  Aligned_cols=185  Identities=14%  Similarity=0.066  Sum_probs=103.5

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCe--E-EEEeCCC--eEEEEECCCCCCCCCCccccccceEEEE
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK--V-ISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFC  114 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~  114 (291)
                      ..|.+.|...++. ..+....  ..+.+-+|+|  ||+.  + ++...+|  .|.+.++.+++...  +.........  
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~--~~~~sP~wSP--DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~--  235 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEH--SLSITPTWMH--IGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLM--  235 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCC--CCcccceEcc--CCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccc--
Confidence            4677778764443 3343333  3377889999  9874  2 2444443  57777887765322  1111111100  


Q ss_pred             EeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec---CCcCeEEEEeCCCcc--eeeEec
Q 022870          115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG---EQLSEVEIWDLNTAE--RCTRLH  189 (291)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~d~~i~~wd~~~~~--~~~~~~  189 (291)
                                                             .+|+|||+.++++..   ..+-.+.+|++..+.  ....+.
T Consensus       236 ---------------------------------------p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt  276 (428)
T PRK01029        236 ---------------------------------------PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL  276 (428)
T ss_pred             ---------------------------------------eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee
Confidence                                                   449999988776431   223344557776531  222222


Q ss_pred             ccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE--EccCCCCceeeccccccceeEEEeecCCCee
Q 022870          190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW--DIRNPGIPLTAMKVHLEPVLCLSIDESCNGG  267 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw--d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  267 (291)
                      .       ..    .+...... |+|+   |+.++++...+|...+|  ++...+.....+..+...+....|+|+|+.|
T Consensus       277 ~-------~~----~~~~~~p~-wSPD---G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        277 N-------EA----FGTQGNPS-FSPD---GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             c-------CC----CCCcCCeE-ECCC---CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence            1       11    11222344 9998   55234444456655555  4432133344455555667889999999988


Q ss_pred             EEecCC---CeEEEEEcCCCcee
Q 022870          268 ISGGAD---QKIVLYNLDHSTVS  287 (291)
Q Consensus       268 ~s~s~d---g~i~vw~~~~~~~~  287 (291)
                      +..+.+   ..|.+||+.+++..
T Consensus       342 af~~~~~g~~~I~v~dl~~g~~~  364 (428)
T PRK01029        342 AFCSVIKGVRQICVYDLATGRDY  364 (428)
T ss_pred             EEEEcCCCCcEEEEEECCCCCeE
Confidence            866543   47999999888654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=2.3e-07  Score=75.87  Aligned_cols=197  Identities=6%  Similarity=-0.027  Sum_probs=116.6

Q ss_pred             ceeEEEEcCCCCE-EEEecC---CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCC--CeEEEEE
Q 022870           20 SVTDVCFHQTKPI-LFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD--GTVKCWD   92 (291)
Q Consensus        20 ~v~~l~~~~~~~~-l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d--g~i~iwd   92 (291)
                      .+..-.|+|||+. ++..+.   +..|.++|+.+++...... ..  .......|+|  ||+.++ +.+.+  ..|.++|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~--g~~~~~~~SP--DG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ--GMLVVSDVSK--DGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC--CcEEeeEECC--CCCEEEEEEccCCCcEEEEEE
Confidence            5678999999984 554333   4579999998876654433 23  2366788999  988766 44433  4677778


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc-
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL-  171 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-  171 (291)
                      +.+++...  +.....  ....                                       ..|+|||+.+++++...+ 
T Consensus       264 l~~g~~~~--LT~~~~--~d~~---------------------------------------p~~SPDG~~I~F~Sdr~g~  300 (419)
T PRK04043        264 TNTKTLTQ--ITNYPG--IDVN---------------------------------------GNFVEDDKRIVFVSDRLGY  300 (419)
T ss_pred             CCCCcEEE--cccCCC--ccCc---------------------------------------cEECCCCCEEEEEECCCCC
Confidence            77664321  111110  0000                                       349999998887653322 


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC--------CcEEEEEccCCCC
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--------GSILVWDIRNPGI  243 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d--------g~i~vwd~~~~~~  243 (291)
                      ..|.+.|+.+++..+....       +.    .    ... |+|+   |+.++++...+        ..|.+.|+.+ +.
T Consensus       301 ~~Iy~~dl~~g~~~rlt~~-------g~----~----~~~-~SPD---G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~  360 (419)
T PRK04043        301 PNIFMKKLNSGSVEQVVFH-------GK----N----NSS-VSTY---KNYIVYSSRETNNEFGKNTFNLYLISTNS-DY  360 (419)
T ss_pred             ceEEEEECCCCCeEeCccC-------CC----c----Cce-ECCC---CCEEEEEEcCCCcccCCCCcEEEEEECCC-CC
Confidence            2588888887765332221       11    1    123 9998   55344444432        3788889876 43


Q ss_pred             ceeeccccccceeEEEeecCCCeeEEecCC---CeEEEEEcCCCce
Q 022870          244 PLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTV  286 (291)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vw~~~~~~~  286 (291)
                       ...+... .......|+|||+.|+-.+.+   ..+.+.+++....
T Consensus       361 -~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~  404 (419)
T PRK04043        361 -IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS  404 (419)
T ss_pred             -eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence             3444432 233458899999987655433   2466777766543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.09  E-value=7.4e-08  Score=78.40  Aligned_cols=226  Identities=14%  Similarity=0.086  Sum_probs=119.1

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccc
Q 022870           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (291)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  109 (291)
                      +..++.++.||.+..+|..+|+.+.......   .+.+.-..   .+..++.++.+|.|..||.++++...+.  .....
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~--~~~~~  176 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS---EVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTY--SRVTP  176 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCc---eeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEE--ccCCC
Confidence            4466677777888888877777766544321   12221111   2357777888999999999988765421  11110


Q ss_pred             eEEEE-Eeecc-cCccceeccCCCCceeeecccCcccccc-CC---CCCC------cccCC--CCCcEEEEecCCcCeEE
Q 022870          110 SYHFC-KLSLV-KEPYANAKQANEPKDCYEREVGETVDTD-SL---CDSK------DDVPA--EGPKYMAVAGEQLSEVE  175 (291)
Q Consensus       110 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~------~~~~~--~~~~~~~~~g~~d~~i~  175 (291)
                      ..... ..++. ...........+....++...++..-.. ..   +...      ..-+|  .+..+++  ++.+|.++
T Consensus       177 ~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~--~~~~g~l~  254 (377)
T TIGR03300       177 ALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYA--VSYQGRVA  254 (377)
T ss_pred             ceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEE--EEcCCEEE
Confidence            00000 00000 0001111111222333333333221110 00   0000      00111  2344443  34579999


Q ss_pred             EEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc-ccc
Q 022870          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-LEP  254 (291)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h-~~~  254 (291)
                      .||.++++.+.....       .      .. .... ..     +. .+++++.+|.|+.+|..+ ++.+...... ...
T Consensus       255 a~d~~tG~~~W~~~~-------~------~~-~~p~-~~-----~~-~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~  312 (377)
T TIGR03300       255 ALDLRSGRVLWKRDA-------S------SY-QGPA-VD-----DN-RLYVTDADGVVVALDRRS-GSELWKNDELKYRQ  312 (377)
T ss_pred             EEECCCCcEEEeecc-------C------Cc-cCce-Ee-----CC-EEEEECCCCeEEEEECCC-CcEEEccccccCCc
Confidence            999999987665541       0      00 0111 21     22 678888999999999988 7766555321 122


Q ss_pred             eeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       255 v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      ..+....  +..|++++.+|.|+++|.++++++..
T Consensus       313 ~ssp~i~--g~~l~~~~~~G~l~~~d~~tG~~~~~  345 (377)
T TIGR03300       313 LTAPAVV--GGYLVVGDFEGYLHWLSREDGSFVAR  345 (377)
T ss_pred             cccCEEE--CCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            2232333  34788899999999999999988744

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.04  E-value=8.8e-09  Score=85.11  Aligned_cols=243  Identities=9%  Similarity=0.026  Sum_probs=145.6

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe---------------EEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---------------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      .....|++|+....++|.|+.||.+++-.+.+..               .-.++++|...  |.-+.|+.  ....|-+.
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~s--V~vvTWNe--~~QKLTtS   89 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNAS--VMVVTWNE--NNQKLTTS   89 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcce--EEEEEecc--cccccccc
Confidence            4567899999988899999999999999876521               12356788855  99999999  77888899


Q ss_pred             eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCC
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG  160 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  160 (291)
                      ..+|.|.+|-+-.+....+.+..-+........+...+.....+.. .+...+-.++..+.....+.+...  +.|++|.
T Consensus        90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe-DGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE-DGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDL  168 (1189)
T ss_pred             CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc-cCCEEEEeeccceecchhcchheccceeecccH
Confidence            9999999999987765442222222223333334333333222221 222222233333333333333222  7899998


Q ss_pred             CcEEEEecCCcCeEEEEeCCCcceeeEeccccc------CCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC------GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (291)
                      +.++  .+-.+|.+.+||....- ..++...+.      ....+|.  ..+..+.-..+-|..++.. .|+.+..+|.+.
T Consensus       169 ~~~L--f~~ange~hlydnqgnF-~~Kl~~~c~Vn~tg~~s~~~~k--ia~i~w~~g~~~~v~pdrP-~lavcy~nGr~Q  242 (1189)
T KOG2041|consen  169 EQAL--FKKANGETHLYDNQGNF-ERKLEKDCEVNGTGIFSNFPTK--IAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQ  242 (1189)
T ss_pred             HHHH--hhhcCCcEEEecccccH-HHhhhhceEEeeeeeecCCCcc--ccceeeccCccccCCCCCC-EEEEEEcCceeh
Confidence            8776  45567999999986431 111111110      0111111  1111110000122222222 899999999999


Q ss_pred             EEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC
Q 022870          235 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD  273 (291)
Q Consensus       235 vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  273 (291)
                      +.--.+...|+..-.+  -.+.++.|+++|.+|+.++.|
T Consensus       243 iMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  243 IMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             hhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCc
Confidence            9876654555544333  578899999999999998875

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.03  E-value=8.7e-08  Score=76.12  Aligned_cols=244  Identities=12%  Similarity=0.013  Sum_probs=148.8

Q ss_pred             cceeEEEEcCCCCEEEEecCC---------------CeEEEEeCCCCeEEEEEeeecCCcceE-EEEEeecCCCCeEEEE
Q 022870           19 ASVTDVCFHQTKPILFAGTTG---------------GELRIWDTVQHRTVSSSWVHSAAHGIV-SVATGPSIGLNKVISQ   82 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~d---------------g~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~   82 (291)
                      ..|..+.|+|.+++|.|-+..               ..+.+||..++..+..+.....+.-.+ -+.|+-  +..+++-.
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~--~D~y~ARv  149 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI--DDKYVARV  149 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee--cchhhhhh
Confidence            458999999999999986543               359999999999999887765432244 677887  65666644


Q ss_pred             eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCcccee------ccCCCCceeeecccCccccc-cCCCCCC--
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA------KQANEPKDCYEREVGETVDT-DSLCDSK--  153 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~--  153 (291)
                      . ...+.++++ +......+...++........+++.......+      ....+...++.+.....+.. .+..-+.  
T Consensus       150 v-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q  227 (561)
T COG5354         150 V-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ  227 (561)
T ss_pred             c-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence            3 347999998 55444333334443333333333332111110      11223344444443332222 2222222  


Q ss_pred             cccCCCCCcEEEEecC---------CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEE
Q 022870          154 DDVPAEGPKYMAVAGE---------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~---------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l  224 (291)
                      +.|++.|.++++-+-.         ....++|++++...+.....             ..+.+.... |.|.+.  +.-+
T Consensus       228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~-------------~~~pVhdf~-W~p~S~--~F~v  291 (561)
T COG5354         228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKD-------------LKDPVHDFT-WEPLSS--RFAV  291 (561)
T ss_pred             EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecc-------------ccccceeee-ecccCC--ceeE
Confidence            7788888877653211         12457788877443332221             356778887 999853  3256


Q ss_pred             EeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC---CeEEEEEcCCCce
Q 022870          225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTV  286 (291)
Q Consensus       225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vw~~~~~~~  286 (291)
                      ++|...-.+.++|++.  .....+  ....=+.+.|+|.+++++.++-|   |.+-+||......
T Consensus       292 i~g~~pa~~s~~~lr~--Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~  352 (561)
T COG5354         292 ISGYMPASVSVFDLRG--NLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK  352 (561)
T ss_pred             Eecccccceeeccccc--ceEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence            6778999999999994  433333  34555778889999998887766   6788888776544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.03  E-value=7.3e-09  Score=75.25  Aligned_cols=208  Identities=16%  Similarity=0.149  Sum_probs=117.7

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE-EEEeeecCCcceEEEEEeecCCCCeEEEEeC-
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGR-   84 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-   84 (291)
                      ...+.+.+.-|+++-.+-+.+-.++.++++..||.+.+.+.+.-..+ +.+....  ..-.+.++..  .++.+.++.. 
T Consensus        78 ~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~--~~~as~~~~~--~~~~i~s~~~g  153 (319)
T KOG4714|consen   78 GIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIH--SGSASRKICR--HGNSILSGGCG  153 (319)
T ss_pred             CcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccc--ccccccceee--cccEEecCCcc
Confidence            33456666666665555555556778999999999999997651111 1111111  0122333333  4445444332 


Q ss_pred             ----CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCC
Q 022870           85 ----DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG  160 (291)
Q Consensus        85 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (291)
                          -+..+.|+++..+........+..   ..+                                       ++-+|..
T Consensus       154 ~~n~~d~~~a~~~~p~~t~~~~~~~~~~---v~~---------------------------------------l~~hp~q  191 (319)
T KOG4714|consen  154 NWNAQDNFYANTLDPIKTLIPSKKALDA---VTA---------------------------------------LCSHPAQ  191 (319)
T ss_pred             eEeeccceeeeccccccccccccccccc---chh---------------------------------------hhCCccc
Confidence                123445555433221100000000   000                                       5567777


Q ss_pred             CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      .++++ +|+.||.+-+||++....+..+-.       .|    +..++.+. |+|..+  . .|+++++||.+..||..+
T Consensus       192 q~~v~-cgt~dg~~~l~d~rn~~~p~S~l~-------ah----k~~i~eV~-FHpk~p--~-~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  192 QHLVC-CGTDDGIVGLWDARNVAMPVSLLK-------AH----KAEIWEVH-FHPKNP--E-HLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccEEE-EecCCCeEEEEEcccccchHHHHH-------Hh----hhhhhhee-ccCCCc--h-heeEecCCCcEEEEcCCC
Confidence            77665 788899999999998754443332       44    44566666 999854  3 799999999999999873


Q ss_pred             CCCceeec---ccc----------------------ccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          241 PGIPLTAM---KVH----------------------LEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       241 ~~~~~~~~---~~h----------------------~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                        .++..-   ..|                      ...|++  |+--|..|++|+.-+.|++++
T Consensus       256 --~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  256 --TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             --ceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence              221100   000                      112222  344556889999888888864

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.03  E-value=1.7e-09  Score=97.30  Aligned_cols=190  Identities=12%  Similarity=0.179  Sum_probs=123.9

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceE
Q 022870           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY  111 (291)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  111 (291)
                      .+.....++...-|..+-+...  ++.+-  ..|.++.-+|  ...+.+||+.||.+++|....+..+.    .......
T Consensus      2182 ~~~~~n~~~~~~tq~~~~~~~~--~k~~v--~~v~r~~sHp--~~~~Yltgs~dgsv~~~~w~~~~~v~----~~rt~g~ 2251 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASVM--IKHPV--ENVRRMTSHP--SDPYYLTGSQDGSVRMFEWGHGQQVV----CFRTAGN 2251 (2439)
T ss_pred             cCCcccCCccccceecccceeE--eeccc--CceeeecCCC--CCceEEecCCCceEEEEeccCCCeEE----EeeccCc
Confidence            3444444555555654433222  22222  3488888888  66889999999999999988765422    1111110


Q ss_pred             EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEeccc
Q 022870          112 HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN  191 (291)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~  191 (291)
                       .. .                                   +...|+.+|+.+-+  +..||.+.+|.+. .++....+  
T Consensus      2252 -s~-v-----------------------------------tr~~f~~qGnk~~i--~d~dg~l~l~q~~-pk~~~s~q-- 2289 (2439)
T KOG1064|consen 2252 -SR-V-----------------------------------TRSRFNHQGNKFGI--VDGDGDLSLWQAS-PKPYTSWQ-- 2289 (2439)
T ss_pred             -ch-h-----------------------------------hhhhhcccCCceee--eccCCceeecccC-Ccceeccc--
Confidence             00 0                                   00458888876654  4458999999987 44544444  


Q ss_pred             ccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec---CCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeE
Q 022870          192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI  268 (291)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  268 (291)
                            .|......    .. |-..      .+++++   .++.+.+||..-+...-..-..|.+.++++++-|+.+.|+
T Consensus      2290 ------chnk~~~D----f~-Fi~s------~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2290 ------CHNKALSD----FR-FIGS------LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred             ------cCCccccc----ee-eeeh------hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEE
Confidence                  44332222    22 4432      455553   5789999997643433333378999999999999999999


Q ss_pred             EecCCCeEEEEEcCCCceeeee
Q 022870          269 SGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       269 s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +||.+|.|++||++..+++|++
T Consensus      2353 sggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred             ecCCcCcEEEeehHHHHHHHHh
Confidence            9999999999999999887753

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.02  E-value=4e-08  Score=71.85  Aligned_cols=196  Identities=11%  Similarity=0.005  Sum_probs=117.5

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceE
Q 022870           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY  111 (291)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  111 (291)
                      .+..++.|.++++.+++-+.....+  |...-.+.++++++  ++.++++.+....|..|.+.........+........
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~--h~~~~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~  205 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAV--HNQNLTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH  205 (344)
T ss_pred             ceeeccCCcceeEEEEecCccccee--eccccceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence            3555677777777777654433322  32212378999999  9999999999999999998865432110111111111


Q ss_pred             EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEeccc
Q 022870          112 HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN  191 (291)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~  191 (291)
                      ..+                                       ..|+.... .+| .+..||++.|||++.......... 
T Consensus       206 gF~---------------------------------------~S~s~~~~-~FA-v~~Qdg~~~I~DVR~~~tpm~~~s-  243 (344)
T KOG4532|consen  206 GFY---------------------------------------NSFSENDL-QFA-VVFQDGTCAIYDVRNMATPMAEIS-  243 (344)
T ss_pred             cee---------------------------------------eeeccCcc-eEE-EEecCCcEEEEEecccccchhhhc-
Confidence            111                                       33555443 333 678899999999998765444332 


Q ss_pred             ccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec-------ccccc-ceeEEEeecC
Q 022870          192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-------KVHLE-PVLCLSIDES  263 (291)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~-------~~h~~-~v~~~~~~~~  263 (291)
                            .....+++.+..+. |+|.+...  +|+..-.-+.+.+.|+++ .+-.+.+       ..|.. .|.+-.|+.+
T Consensus       244 ------strp~hnGa~R~c~-Fsl~g~lD--LLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~  313 (344)
T KOG4532|consen  244 ------STRPHHNGAFRVCR-FSLYGLLD--LLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVERKHNTQHIFGTNFNNE  313 (344)
T ss_pred             ------ccCCCCCCceEEEE-ecCCCcce--EEEEecCcceEEEEEccc-CceeeEEecCccccccccccccccccccCC
Confidence                  11122466666666 99875533  455555567899999998 5433322       22333 3888888766


Q ss_pred             CCeeEEecCCCeEEEEEcCCC
Q 022870          264 CNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       264 ~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      +.-+.+.+++ .+.-|++.+.
T Consensus       314 n~s~~v~~e~-~~ae~ni~sr  333 (344)
T KOG4532|consen  314 NESNDVKNEL-QGAEYNILSR  333 (344)
T ss_pred             Ccccccccch-hhheeecccc
Confidence            6655555544 4566666553

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.01  E-value=1.4e-07  Score=76.08  Aligned_cols=153  Identities=13%  Similarity=0.148  Sum_probs=110.4

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccccc
Q 022870           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (291)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  108 (291)
                      +-..++-|...|.|.+|++..++....+....+.++|.++.++.  +-..|.+++.|+.+..|+.......+    ..+.
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~----~~~~  142 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIR----IWKE  142 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeee----eecc
Confidence            33477888999999999999999988888655557799999988  77899999999999999998876533    1111


Q ss_pred             ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEe
Q 022870          109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (291)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~  188 (291)
                      ......                                      .++.+||+..++  +++  +.|++||+++++.+..|
T Consensus       143 ~~~~~~--------------------------------------sl~is~D~~~l~--~as--~~ik~~~~~~kevv~~f  180 (541)
T KOG4547|consen  143 QKPLVS--------------------------------------SLCISPDGKILL--TAS--RQIKVLDIETKEVVITF  180 (541)
T ss_pred             CCCccc--------------------------------------eEEEcCCCCEEE--ecc--ceEEEEEccCceEEEEe
Confidence            111000                                      055889987655  455  78999999999999999


Q ss_pred             cccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      +        ||..+.+...+... +.  +..|.++|.+...+..|.+|-++.
T Consensus       181 t--------gh~s~v~t~~f~~~-~~--g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  181 T--------GHGSPVRTLSFTTL-ID--GIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             c--------CCCcceEEEEEEEe-cc--ccccceeeeccccccceeEEEEEc
Confidence            9        88665444322221 22  223665666666777888888764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.01  E-value=1.6e-07  Score=74.70  Aligned_cols=240  Identities=13%  Similarity=0.099  Sum_probs=142.9

Q ss_pred             ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC-------
Q 022870           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-------   86 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------   86 (291)
                      +..-.-++...+|||.|.+|++.... .|.+|+-.....+..+. |   ..|..+.|+|  .+.+|.+=+..+       
T Consensus        28 ~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~---~~V~~~~fSP--~~kYL~tw~~~pi~~pe~e  100 (561)
T COG5354          28 FESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H---PDVKYLDFSP--NEKYLVTWSREPIIEPEIE  100 (561)
T ss_pred             ccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c---CCceecccCc--ccceeeeeccCCccChhhc
Confidence            33356789999999999999987765 48999987766555554 3   2299999999  889999866543       


Q ss_pred             --------eEEEEECCCCCCCCCCccccccce--E-EEEEeecccCccceeccCCCCceeeecccCcccccc---CC--C
Q 022870           87 --------TVKCWDIENGGLSSNPSLTIKTNS--Y-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD---SL--C  150 (291)
Q Consensus        87 --------~i~iwd~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~  150 (291)
                              .+.+||+.++..+.  .+.....+  . ....++...  ...+-..+.+..++.+ ..+.....   +.  +
T Consensus       101 ~sp~~~~n~~~vwd~~sg~iv~--sf~~~~q~~~~Wp~~k~s~~D--~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~g  175 (561)
T COG5354         101 ISPFTSKNNVFVWDIASGMIVF--SFNGISQPYLGWPVLKFSIDD--KYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVG  175 (561)
T ss_pred             cCCccccCceeEEeccCceeEe--eccccCCcccccceeeeeecc--hhhhhhccCeEEEEec-CCccccCchhhccccc
Confidence                    48999999887644  11111111  1 122222222  2223334555555554 22211111   11  1


Q ss_pred             CCCcccCCCCCcEE-EE----ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEE
Q 022870          151 DSKDDVPAEGPKYM-AV----AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (291)
Q Consensus       151 ~~~~~~~~~~~~~~-~~----~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (291)
                      -...+++|.++.-. +.    .+..++.+++|.+..+..+.+...            ....-..+. |++.   |. +|+
T Consensus       176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l------------fk~~~~qLk-W~~~---g~-~ll  238 (561)
T COG5354         176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL------------FKVSGVQLK-WQVL---GK-YLL  238 (561)
T ss_pred             eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee------------EeecccEEE-EecC---Cc-eEE
Confidence            11166777643322 11    234578899999987665544331            122233444 7776   33 332


Q ss_pred             ee-----------cCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec--CCCeEEEEEcCCC
Q 022870          226 AG-----------YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHS  284 (291)
Q Consensus       226 ~g-----------~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~dg~i~vw~~~~~  284 (291)
                      +-           .....+++++++.  +-+.....-.++|...+|.|.++.+++.+  .+-.+.++|++..
T Consensus       239 ~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         239 VLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             EEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence            21           1235788999884  33333335578999999988888776554  6778888888776

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.01  E-value=2.9e-06  Score=64.80  Aligned_cols=199  Identities=14%  Similarity=0.135  Sum_probs=121.3

Q ss_pred             EEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEe-ecCCCCeEEEEeCCCeEEEEECCCCCCCC
Q 022870           23 DVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG-PSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (291)
Q Consensus        23 ~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  100 (291)
                      +..|.+ ++.++++--..+.|..|+..+++... +...   . ...+++. +  + ..|+.+...+ +.++|..+++...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~---~-~~G~~~~~~--~-g~l~v~~~~~-~~~~d~~~g~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP---G-PNGMAFDRP--D-GRLYVADSGG-IAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS---S-EEEEEEECT--T-SEEEEEETTC-EEEEETTTTEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC---C-CceEEEEcc--C-CEEEEEEcCc-eEEEecCCCcEEE
Confidence            567887 78788888889999999988775533 3222   1 5677787 5  5 6666666654 5566888764321


Q ss_pred             CCccccc----cceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc-----
Q 022870          101 NPSLTIK----TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL-----  171 (291)
Q Consensus       101 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-----  171 (291)
                        .....    .......                                       +++.|+|+.++...+...     
T Consensus        75 --~~~~~~~~~~~~~~ND---------------------------------------~~vd~~G~ly~t~~~~~~~~~~~  113 (246)
T PF08450_consen   75 --LADLPDGGVPFNRPND---------------------------------------VAVDPDGNLYVTDSGGGGASGID  113 (246)
T ss_dssp             --EEEEETTCSCTEEEEE---------------------------------------EEE-TTS-EEEEEECCBCTTCGG
T ss_pred             --EeeccCCCcccCCCce---------------------------------------EEEcCCCCEEEEecCCCcccccc
Confidence              11110    0000000                                       568888874432222111     


Q ss_pred             -CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC------c
Q 022870          172 -SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI------P  244 (291)
Q Consensus       172 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~------~  244 (291)
                       |.+..++.. ++.......             -.....++ |+|+   ++.++++-+..+.|..+++...+.      .
T Consensus       114 ~g~v~~~~~~-~~~~~~~~~-------------~~~pNGi~-~s~d---g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~  175 (246)
T PF08450_consen  114 PGSVYRIDPD-GKVTVVADG-------------LGFPNGIA-FSPD---GKTLYVADSFNGRIWRFDLDADGGELSNRRV  175 (246)
T ss_dssp             SEEEEEEETT-SEEEEEEEE-------------ESSEEEEE-EETT---SSEEEEEETTTTEEEEEEEETTTCCEEEEEE
T ss_pred             ccceEEECCC-CeEEEEecC-------------cccccceE-ECCc---chheeecccccceeEEEeccccccceeeeee
Confidence             568888887 443333321             22345565 9998   543556778889999999975333      1


Q ss_pred             eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ...+....+..-.++++.+|++.++.-..+.|.+++.+ ++++..+
T Consensus       176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i  220 (246)
T PF08450_consen  176 FIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREI  220 (246)
T ss_dssp             EEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred             EEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence            12222222347899999999988887788999999988 7776553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=5.8e-09  Score=81.40  Aligned_cols=212  Identities=13%  Similarity=0.062  Sum_probs=144.1

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCC--C-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CCeEEEEE
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--H-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVKCWD   92 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~--~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd   92 (291)
                      |++.|+-+.... .+++.+++.||.++.|--..  + +.+..+..|..  .|.+++.+-  ++.++.|++. |..++++|
T Consensus         8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~--~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG--VILSLAVSY--DGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHH--HHHhhhccc--cceeEeeccCcccceeEEE
Confidence            888888776654 34899999999999998432  1 33444556664  488999888  8888899887 99999999


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCC-CCcEEEEecCCc
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE-GPKYMAVAGEQL  171 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d  171 (291)
                      ++.-....  ...+...+...+.+                                       .++. -..+++++...+
T Consensus        83 vEn~Dmin--miKL~~lPg~a~wv---------------------------------------~skGd~~s~IAVs~~~s  121 (558)
T KOG0882|consen   83 VENFDMIN--MIKLVDLPGFAEWV---------------------------------------TSKGDKISLIAVSLFKS  121 (558)
T ss_pred             eeccchhh--hcccccCCCceEEe---------------------------------------cCCCCeeeeEEeecccC
Confidence            98765432  11222222221110                                       1111 123566666678


Q ss_pred             CeEEEEeCCCcce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC-----Cce
Q 022870          172 SEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-----IPL  245 (291)
Q Consensus       172 ~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-----~~~  245 (291)
                      +.+.++|-....+ ...+..       -|    ..++..+. ++|.+   . .+++....|.|.-|......     +..
T Consensus       122 g~i~VvD~~~d~~q~~~fkk-------lH----~sPV~~i~-y~qa~---D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~  185 (558)
T KOG0882|consen  122 GKIFVVDGFGDFCQDGYFKK-------LH----FSPVKKIR-YNQAG---D-SAVSIDISGMVEYWSAEGPFQFPRTNLN  185 (558)
T ss_pred             CCcEEECCcCCcCccceecc-------cc----cCceEEEE-eeccc---c-ceeeccccceeEeecCCCcccCcccccc
Confidence            9999999876543 222221       22    44566666 88873   3 78888899999999987211     111


Q ss_pred             ---------eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          246 ---------TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       246 ---------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                               ..+........++.|+|++..+.+-+.|..|+++.+.++++++.+
T Consensus       186 ~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  186 FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence                     112223457889999999999999999999999999999988653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.97  E-value=5.2e-07  Score=80.50  Aligned_cols=241  Identities=10%  Similarity=0.074  Sum_probs=135.6

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEE----eCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIW----DTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iw----d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      ..+.|.++.|-++...++.+..+|.|.+.    +..+... ..+-.-.  .+|.+++|+|  |+.+|+.+..+++|.+.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd--~GI~a~~WSP--D~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVD--SGILAASWSP--DEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEc--CcEEEEEECC--CcCEEEEEeCCCEEEEEe
Confidence            35679999999998889999999999999    5444322 2222222  4599999999  999999999899988875


Q ss_pred             CCCCCCCCCCccccccceEE-EEEeecccCccceeccCCCCce----eeecccCccccccCC--CCCC-cccCCCCCcEE
Q 022870           93 IENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAKQANEPKD----CYEREVGETVDTDSL--CDSK-DDVPAEGPKYM  164 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~  164 (291)
                      -. ...+.+  ..+...... ...+++.+........+.....    ..+......-...+.  .... ++|-.||.++.
T Consensus       149 ~~-fd~i~E--~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA  225 (928)
T PF04762_consen  149 RD-FDPISE--VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA  225 (928)
T ss_pred             cc-ceEEEE--eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence            32 221110  011111000 0111111111111100000000    000000000011111  1111 88999998766


Q ss_pred             EEec--CC--cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC---CCcEEEEE
Q 022870          165 AVAG--EQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DGSILVWD  237 (291)
Q Consensus       165 ~~~g--~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---dg~i~vwd  237 (291)
                      +.+-  ..  -+.+|+|+-+ |+...+-+            +..+.-.+++ |.|.+   . +||+...   ...|.+|.
T Consensus       226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE------------~v~gLe~~l~-WrPsG---~-lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  226 VSSVEPETGSRRVIRVYSRE-GELQSTSE------------PVDGLEGALS-WRPSG---N-LIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             EEEEEcCCCceeEEEEECCC-ceEEeccc------------cCCCccCCcc-CCCCC---C-EEEEEEEcCCCcEEEEEe
Confidence            5443  22  2679999876 54332222            2344455565 99984   3 6776643   35677777


Q ss_pred             ccCCCCceeecc----ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          238 IRNPGIPLTAMK----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       238 ~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      .+  |-....|.    .....|..|+|++++..||..-.|. |.+|-..+..-
T Consensus       288 rN--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW  337 (928)
T PF04762_consen  288 RN--GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW  337 (928)
T ss_pred             cC--CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE
Confidence            44  43333322    3456899999999999999877665 99998887653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.97  E-value=1.8e-06  Score=68.15  Aligned_cols=208  Identities=9%  Similarity=0.007  Sum_probs=115.1

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC----------CCeEEEEECCCCCCCCCCccccccc
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----------DGTVKCWDIENGGLSSNPSLTIKTN  109 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~  109 (291)
                      ++|.+.|..+++.+.++.....+   ..+ ++|  |++.|+.+..          +..|.+||..+.+...+.  .+...
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P---~~~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i--~~p~~   98 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLP---NPV-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI--ELPEG   98 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCC---cee-ECC--CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE--ccCCC
Confidence            89999999999999988876543   234 899  9888876554          789999999998765421  11111


Q ss_pred             eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEec
Q 022870          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (291)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~  189 (291)
                      +.........                                 .++++|+|+.++++--+-+..|.+.|+.+++.+.++.
T Consensus        99 p~~~~~~~~~---------------------------------~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~  145 (352)
T TIGR02658        99 PRFLVGTYPW---------------------------------MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD  145 (352)
T ss_pred             chhhccCccc---------------------------------eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence            0000000000                                 0456777766655322336677777777766555443


Q ss_pred             ccccC--------CCCCCCCC-----------cceeeeeEEEecC------CCC-----CCceEEEeecCCCcEEEEEcc
Q 022870          190 QNSCG--------GSPNFSSK-----------GRGMCMAVQAYLP------SKS-----QGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       190 ~~~~~--------~~~~~~~~-----------~~~~~~~~~~~~p------~~~-----~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      ...+.        .+..|...           ..........|.+      ..+     +|+ ++.+..+ |.|++.|+.
T Consensus       146 vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~  223 (352)
T TIGR02658       146 VPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLS  223 (352)
T ss_pred             CCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc-EEEEecC-CeEEEEecC
Confidence            21000        00000000           0000111111222      111     355 5656555 999999965


Q ss_pred             CC----CCceeeccc-------cccceeEEEeecCCCeeEEec----------CCCeEEEEEcCCCceeeee
Q 022870          240 NP----GIPLTAMKV-------HLEPVLCLSIDESCNGGISGG----------ADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       240 ~~----~~~~~~~~~-------h~~~v~~~~~~~~~~~l~s~s----------~dg~i~vw~~~~~~~~~~~  290 (291)
                      ..    ..+...+..       ..+.+.-++++++++.+....          ..+.|.++|..+++.+..+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i  295 (352)
T TIGR02658       224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI  295 (352)
T ss_pred             CCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE
Confidence            31    222222211       122334499999988887642          1258999999999988765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.96  E-value=2.8e-07  Score=70.01  Aligned_cols=192  Identities=14%  Similarity=0.137  Sum_probs=114.6

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCC-Cccccc
Q 022870           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN-PSLTIK  107 (291)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~  107 (291)
                      ++..+++++.++.|..||..+|+.+........   +......   .+..++.+..++.|..+|..+++...+ ......
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~  108 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP---ISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP  108 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC---GGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc---ccceeee---cccccccccceeeeEecccCCcceeeeecccccc
Confidence            455787888999999999999999888776322   2211222   346777777888999999999876441 000000


Q ss_pred             cceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeE
Q 022870          108 TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR  187 (291)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~  187 (291)
                      ......                                       .......+..+++  +..++.|..+|+++++.+..
T Consensus       109 ~~~~~~---------------------------------------~~~~~~~~~~~~~--~~~~g~l~~~d~~tG~~~w~  147 (238)
T PF13360_consen  109 PAGVRS---------------------------------------SSSPAVDGDRLYV--GTSSGKLVALDPKTGKLLWK  147 (238)
T ss_dssp             TCSTB-----------------------------------------SEEEEETTEEEE--EETCSEEEEEETTTTEEEEE
T ss_pred             cccccc---------------------------------------ccCceEecCEEEE--EeccCcEEEEecCCCcEEEE
Confidence            000000                                       0112223455553  33369999999999999887


Q ss_pred             ecccccCCCCCCCCCcce-------eeeeEEEecCCCCCCceEEEeecCCCc-EEEEEccCCCCceeeccccccceeEEE
Q 022870          188 LHQNSCGGSPNFSSKGRG-------MCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAMKVHLEPVLCLS  259 (291)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~p~~~~g~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~h~~~v~~~~  259 (291)
                      ...        .......       ....+. +. +   +  .++.++.++. +.+ |+.+ ++.+....  ...+..+ 
T Consensus       148 ~~~--------~~~~~~~~~~~~~~~~~~~~-~~-~---~--~v~~~~~~g~~~~~-d~~t-g~~~w~~~--~~~~~~~-  207 (238)
T PF13360_consen  148 YPV--------GEPRGSSPISSFSDINGSPV-IS-D---G--RVYVSSGDGRVVAV-DLAT-GEKLWSKP--ISGIYSL-  207 (238)
T ss_dssp             EES--------STT-SS--EEEETTEEEEEE-CC-T---T--EEEEECCTSSEEEE-ETTT-TEEEEEEC--SS-ECEC-
T ss_pred             eec--------CCCCCCcceeeecccccceE-EE-C---C--EEEEEcCCCeEEEE-ECCC-CCEEEEec--CCCccCC-
Confidence            763        1111111       111221 22 1   3  5666666775 555 9998 66444322  2223331 


Q ss_pred             eecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          260 IDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       260 ~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      ...++..|+.++.++.|..||+++++.+
T Consensus       208 ~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  208 PSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            3455567777779999999999999875

...

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.96  E-value=2.5e-06  Score=67.71  Aligned_cols=113  Identities=18%  Similarity=0.152  Sum_probs=87.2

Q ss_pred             ccCCCCCcEEEEecCCcC-eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870          155 DVPAEGPKYMAVAGEQLS-EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       155 ~~~~~~~~~~~~~g~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                      .+..+++.++  .|..|| .+-+||.++++..+...             .-+.+.++. .+|+   |+ +++++.....|
T Consensus       366 r~~~~~e~~v--igt~dgD~l~iyd~~~~e~kr~e~-------------~lg~I~av~-vs~d---GK-~~vvaNdr~el  425 (668)
T COG4946         366 RIQVDPEGDV--IGTNDGDKLGIYDKDGGEVKRIEK-------------DLGNIEAVK-VSPD---GK-KVVVANDRFEL  425 (668)
T ss_pred             EEccCCcceE--EeccCCceEEEEecCCceEEEeeC-------------CccceEEEE-EcCC---Cc-EEEEEcCceEE
Confidence            3444555444  466677 89999999887554443             245678887 8988   55 89999999999


Q ss_pred             EEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC----eEEEEEcCCCceee
Q 022870          234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ----KIVLYNLDHSTVSH  288 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg----~i~vw~~~~~~~~~  288 (291)
                      .+.|+.+ +.....-+...+-|+.+.|+|+++++|-+=-+|    .|+++|+.+++...
T Consensus       426 ~vididn-gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         426 WVIDIDN-GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             EEEEecC-CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            9999998 666555555678999999999999998776654    69999999988764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.95  E-value=3.9e-08  Score=75.67  Aligned_cols=160  Identities=11%  Similarity=0.139  Sum_probs=96.2

Q ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEeCCCCe----EEEEEeeecCCcceEEEEEeecCCCCeEEE---EeCCCeEEEEEC
Q 022870           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVIS---QGRDGTVKCWDI   93 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s---~~~dg~i~iwd~   93 (291)
                      ......++.++++|.+..+....++++....    ++........   -+++.|..  +......   ++....+.+|..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~---~~ai~~~~--~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKR---PTAISFIR--EDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccC---cceeeeee--ccceEEEEeecCCceeeeeecc
Confidence            3445567788899988888887777765433    2222222222   34455544  3333333   334445555554


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCe
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  173 (291)
                      ..+...    ..+-.......                                       ++++||++.++  ++..|..
T Consensus       140 ~~~~~~----~~lGhvSml~d---------------------------------------VavS~D~~~Ii--taDRDEk  174 (390)
T KOG3914|consen  140 DSGRCE----PILGHVSMLLD---------------------------------------VAVSPDDQFII--TADRDEK  174 (390)
T ss_pred             cccCcc----hhhhhhhhhhe---------------------------------------eeecCCCCEEE--EecCCce
Confidence            432221    11111111111                                       77999997666  7889999


Q ss_pred             EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      |++-....-..+..+-.       ||    +..+..++ .-++    + .|++|+.|++|++||+++ ++.+..+
T Consensus       175 IRvs~ypa~f~Iesfcl-------GH----~eFVS~is-l~~~----~-~LlS~sGD~tlr~Wd~~s-gk~L~t~  231 (390)
T KOG3914|consen  175 IRVSRYPATFVIESFCL-------GH----KEFVSTIS-LTDN----Y-LLLSGSGDKTLRLWDITS-GKLLDTC  231 (390)
T ss_pred             EEEEecCcccchhhhcc-------cc----Hhheeeee-eccC----c-eeeecCCCCcEEEEeccc-CCccccc
Confidence            99988776666666654       66    44666665 5543    2 689999999999999998 6654443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.95  E-value=9.5e-07  Score=70.86  Aligned_cols=229  Identities=10%  Similarity=0.092  Sum_probs=129.3

Q ss_pred             EEEecCC----CeEEEEeC--CCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC----CCeEEEEECCCC--CCCC
Q 022870           33 LFAGTTG----GELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----DGTVKCWDIENG--GLSS  100 (291)
Q Consensus        33 l~s~~~d----g~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~--~~~~  100 (291)
                      ++.|+..    +.|.+|++  ++++....-... .......++++|  ++++|+++.+    ++.|..|++...  ++..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~   78 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL   78 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEE
Confidence            4455555    68988887  445433221111 113367889999  8899998876    579999998865  2211


Q ss_pred             CCccccc--cceEEEEEeecccCccceeccCCCCceeeecccCcccccc----------------CCCCCC-cccCCCCC
Q 022870          101 NPSLTIK--TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD----------------SLCDSK-DDVPAEGP  161 (291)
Q Consensus       101 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~-~~~~~~~~  161 (291)
                        +....  ........+.........+...++....+.+.....+...                ...|.. +.++|+++
T Consensus        79 --~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~  156 (345)
T PF10282_consen   79 --LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR  156 (345)
T ss_dssp             --EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred             --eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence              11222  1222233334444444555566777777777653211110                111211 89999999


Q ss_pred             cEEEEecCCcCeEEEEeCCCcc--ee--eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870          162 KYMAVAGEQLSEVEIWDLNTAE--RC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (291)
                      +++++--. ...|.+|++....  ..  ..+..           +...-..-+. |+|+   ++...++.-.++.|.+++
T Consensus       157 ~v~v~dlG-~D~v~~~~~~~~~~~l~~~~~~~~-----------~~G~GPRh~~-f~pd---g~~~Yv~~e~s~~v~v~~  220 (345)
T PF10282_consen  157 FVYVPDLG-ADRVYVYDIDDDTGKLTPVDSIKV-----------PPGSGPRHLA-FSPD---GKYAYVVNELSNTVSVFD  220 (345)
T ss_dssp             EEEEEETT-TTEEEEEEE-TTS-TEEEEEEEEC-----------STTSSEEEEE-E-TT---SSEEEEEETTTTEEEEEE
T ss_pred             EEEEEecC-CCEEEEEEEeCCCceEEEeecccc-----------ccCCCCcEEE-EcCC---cCEEEEecCCCCcEEEEe
Confidence            88775444 4589999997655  21  12221           1122233444 9998   553556667788999999


Q ss_pred             ccCC-CCc--eeeccc----c--ccceeEEEeecCCCeeEEec-CCCeEEEEEcC
Q 022870          238 IRNP-GIP--LTAMKV----H--LEPVLCLSIDESCNGGISGG-ADQKIVLYNLD  282 (291)
Q Consensus       238 ~~~~-~~~--~~~~~~----h--~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~~  282 (291)
                      +... +..  +..+..    .  ......|+++|+|++|..+. .++.|.+|+++
T Consensus       221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            9831 221  111111    1  12578899999999886554 57889999994

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=4e-09  Score=79.59  Aligned_cols=117  Identities=18%  Similarity=0.181  Sum_probs=82.7

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcc-----eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (291)
                      +.|...++.++  .|..+|.|..+|++.+.     +...+-             +...+++++ .-..  +++ +|++.+
T Consensus       258 lQf~~s~nLv~--~GcRngeI~~iDLR~rnqG~~~~a~rly-------------h~Ssvtslq-~Lq~--s~q-~LmaS~  318 (425)
T KOG2695|consen  258 LQFAGSDNLVF--NGCRNGEIFVIDLRCRNQGNGWCAQRLY-------------HDSSVTSLQ-ILQF--SQQ-KLMASD  318 (425)
T ss_pred             HHhcccCCeeE--ecccCCcEEEEEeeecccCCCcceEEEE-------------cCcchhhhh-hhcc--ccc-eEeecc
Confidence            45666555333  79999999999998752     233332             233444444 2221  134 899999


Q ss_pred             CCCcEEEEEccCCCCc---eeeccccccceeEEEe--ecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          229 EDGSILVWDIRNPGIP---LTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       229 ~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      .+|+|.+||++- .++   +.++.+|...-.-+-+  ++....+++++.|...|||.++++.++.++
T Consensus       319 M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  319 MTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             CcCceeEeeehh-hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            999999999986 555   7888888654433333  677778899999999999999999988764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.93  E-value=8.2e-07  Score=65.88  Aligned_cols=73  Identities=8%  Similarity=0.101  Sum_probs=50.4

Q ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeec-----CCcceEEEEEeecCC----CCeEEEEeCCCeEEEE
Q 022870           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-----AAHGIVSVATGPSIG----LNKVISQGRDGTVKCW   91 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iw   91 (291)
                      =+.++||||+.+||.+...|+|+++|+.. ..+..+....     -...|-.+.|.+...    ...|++-..+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            46799999999999999999999999864 4343433211     113477777765311    1257777788888887


Q ss_pred             ECC
Q 022870           92 DIE   94 (291)
Q Consensus        92 d~~   94 (291)
                      -+.
T Consensus       125 ~vs  127 (282)
T PF15492_consen  125 LVS  127 (282)
T ss_pred             EEE
Confidence            764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.92  E-value=1e-06  Score=64.71  Aligned_cols=205  Identities=10%  Similarity=0.077  Sum_probs=123.9

Q ss_pred             EEEEcC-----CCCEEEEecCCCeEEEEeCCCCeEEEE-EeeecCCcceEEEE-EeecCCCCeEEEEeCCCeEEEEECCC
Q 022870           23 DVCFHQ-----TKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVA-TGPSIGLNKVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        23 ~l~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~v~~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~   95 (291)
                      .+.|-|     ...+||.|+.-|...+|...+.+.... ...+...  |+-+. +..  ....+..++.|.++++.+++.
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~--v~~~~r~cd--~~~~~~i~sndht~k~~~~~~  147 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNND--VTLVKRYCD--LKFPLNIASNDHTGKTMVVSG  147 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccc--hhhhhhhcc--cccceeeccCCcceeEEEEec
Confidence            456665     334899999999999999886544332 2223211  22111 111  124567788999999999886


Q ss_pred             CCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEE
Q 022870           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE  175 (291)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  175 (291)
                      +....    ..+.....  ..+                                    ++++++++. +++.|. ...|.
T Consensus       148 ~s~~~----~~h~~~~~--~ns------------------------------------~~~snd~~~-~~~Vgd-s~~Vf  183 (344)
T KOG4532|consen  148 DSNKF----AVHNQNLT--QNS------------------------------------LHYSNDPSW-GSSVGD-SRRVF  183 (344)
T ss_pred             Ccccc----eeeccccc--eee------------------------------------eEEcCCCce-EEEecC-CCcce
Confidence            54322    11111100  000                                    447888864 444555 57799


Q ss_pred             EEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec----cc
Q 022870          176 IWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM----KV  250 (291)
Q Consensus       176 ~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~----~~  250 (291)
                      .|.+.... .+.....       .. ....+.+  .. |+....    .+|++.+||.+.|||++..+.++...    ..
T Consensus       184 ~y~id~~sey~~~~~~-------a~-t~D~gF~--~S-~s~~~~----~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~  248 (344)
T KOG4532|consen  184 RYAIDDESEYIENIYE-------AP-TSDHGFY--NS-FSENDL----QFAVVFQDGTCAIYDVRNMATPMAEISSTRPH  248 (344)
T ss_pred             EEEeCCccceeeeeEe-------cc-cCCCcee--ee-eccCcc----eEEEEecCCcEEEEEecccccchhhhcccCCC
Confidence            99886432 2222111       11 1112333  33 776532    89999999999999999877766543    35


Q ss_pred             cccceeEEEeecCCC--eeEEecCCCeEEEEEcCCCceeeee
Q 022870          251 HLEPVLCLSIDESCN--GGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       251 h~~~v~~~~~~~~~~--~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      |.+.+..+.|++-|.  +|.-.-.-+.+.+-|+++++-.+.+
T Consensus       249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            789999999986443  3444445678999999998766554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.88  E-value=1e-07  Score=80.93  Aligned_cols=184  Identities=14%  Similarity=0.148  Sum_probs=126.6

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccccc
Q 022870           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (291)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  108 (291)
                      ++..++.|+-...+..+|+.+.+..+.......  .|+-+..+    ++.+.+|...|+|.+-|.++.+.+.    ++..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~--~v~imR~N----nr~lf~G~t~G~V~LrD~~s~~~ih----t~~a  215 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS--GVTIMRYN----NRNLFCGDTRGTVFLRDPNSFETIH----TFDA  215 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCC--ceEEEEec----CcEEEeecccceEEeecCCcCceee----eeec
Confidence            344677777777888899988887776655443  36666654    3899999999999999999876544    4444


Q ss_pred             ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC--------cCeEEEEeCC
Q 022870          109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ--------LSEVEIWDLN  180 (291)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------d~~i~~wd~~  180 (291)
                      +......                                        |+-.|+ +++++|..        |..|++||+|
T Consensus       216 Hs~siSD----------------------------------------fDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  216 HSGSISD----------------------------------------FDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             cccceee----------------------------------------eeccCC-eEEEeecccccccccccchhhhhhhh
Confidence            4333322                                        444453 34444432        6779999999


Q ss_pred             CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc---eeeccccccceeE
Q 022870          181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP---LTAMKVHLEPVLC  257 (291)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~  257 (291)
                      ..+.+..+..        +..+     .-+ .|.|.-.  . .+++++..|...+-|..+...+   +..+......+.+
T Consensus       255 mmral~PI~~--------~~~P-----~fl-rf~Psl~--t-~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~  317 (1118)
T KOG1275|consen  255 MMRALSPIQF--------PYGP-----QFL-RFHPSLT--T-RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA  317 (1118)
T ss_pred             hhhccCCccc--------ccCc-----hhh-hhccccc--c-eEEEEecccceeeccccccCCCccceeEEccCCCccee
Confidence            8877665542        1111     112 3888743  2 7899999999999994433333   3333344455899


Q ss_pred             EEeecCCCeeEEecCCCeEEEEE
Q 022870          258 LSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       258 ~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      +.+++++..++-|..+|.|.+|.
T Consensus       318 fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  318 FDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EEecCCCceEEEecccCcEeeec
Confidence            99999999999999999999997

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.87  E-value=2.3e-06  Score=67.91  Aligned_cols=143  Identities=17%  Similarity=0.102  Sum_probs=95.6

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCC-eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGG-ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~   94 (291)
                      +|.+.|.-..+.-+++-++.|..|| .+-|+|.++++..+ +...-  ..|.++..++  +|.+++.+-....|.+.|++
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l--g~I~av~vs~--dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL--GNIEAVKVSP--DGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCc--cceEEEEEcC--CCcEEEEEcCceEEEEEEec
Confidence            6888899999998888999999999 89999988776544 44444  4499999999  99999999988999999999


Q ss_pred             CCCCCCCCccccccceEE--EEEeecccCcccee---ccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEEEe
Q 022870           95 NGGLSSNPSLTIKTNSYH--FCKLSLVKEPYANA---KQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVA  167 (291)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  167 (291)
                      ++....    .-++....  ...+++.......+   ........++++...+......+....  -+|.|+++++...+
T Consensus       432 ngnv~~----idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         432 NGNVRL----IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CCCeeE----ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            986532    11221111  12222222222221   222345666777776655444333333  88999999886544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.86  E-value=6.2e-06  Score=75.14  Aligned_cols=230  Identities=11%  Similarity=0.041  Sum_probs=128.9

Q ss_pred             eEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC------------CcceEEEEEeecCCCCeEEEEe-CCCe
Q 022870           22 TDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA------------AHGIVSVATGPSIGLNKVISQG-RDGT   87 (291)
Q Consensus        22 ~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~s~~-~dg~   87 (291)
                      ..+++++ ++.++++-..++.|++||.. ++.+..+.....            -..-..+++.+  +++.|+.+. ..+.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~--~gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA--KKNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC--CCCEEEEEeCCCce
Confidence            4678887 46677777888999999975 554443332100            01247889998  777666554 4578


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC-CcccCCCCCcEEEE
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS-KDDVPAEGPKYMAV  166 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  166 (291)
                      |+.+|..++...     ++.......  ..                    .............+. .++++|++..+++ 
T Consensus       648 Ir~id~~~~~V~-----tlag~G~~g--~~--------------------~~gg~~~~~~~ln~P~gVa~dp~~g~LyV-  699 (1057)
T PLN02919        648 LREIDFVNETVR-----TLAGNGTKG--SD--------------------YQGGKKGTSQVLNSPWDVCFEPVNEKVYI-  699 (1057)
T ss_pred             EEEEecCCCEEE-----EEeccCccc--CC--------------------CCCChhhhHhhcCCCeEEEEecCCCeEEE-
Confidence            999998765321     111000000  00                    000000000000111 1778996666665 


Q ss_pred             ecCCcCeEEEEeCCCcceeeEeccc-ccCCCCCCCC--CcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQN-SCGGSPNFSS--KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      +...++.|++||..++... .+... ......++..  ..-.....++ |+|+   |..++++-+.++.|++||+.+...
T Consensus       700 ad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIa-vspd---G~~LYVADs~n~~Irv~D~~tg~~  774 (1057)
T PLN02919        700 AMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGIS-LSPD---LKELYIADSESSSIRALDLKTGGS  774 (1057)
T ss_pred             EECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEE-EeCC---CCEEEEEECCCCeEEEEECCCCcE
Confidence            4555789999999877543 22110 0000001000  0112345565 8887   443566677789999999986321


Q ss_pred             cee------------ecccc--------ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          244 PLT------------AMKVH--------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       244 ~~~------------~~~~h--------~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      .+.            .+..+        -....+++++++|.++++-+.++.|++||.+++.+.
T Consensus       775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            110            01000        113468999999998899999999999999887654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=2.4e-07  Score=77.51  Aligned_cols=212  Identities=11%  Similarity=0.106  Sum_probs=129.3

Q ss_pred             CCceEEecCCccceeEEEEcCCC------------CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCC
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTK------------PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG   75 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~------------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   75 (291)
                      -+.+++++-|...|+.+.|.|..            -+||++...|.|.+||...+..+..+..+.  +++..++|.+..+
T Consensus        45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~--~~~qdl~W~~~rd  122 (1062)
T KOG1912|consen   45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSN--DSVQDLCWVPARD  122 (1062)
T ss_pred             hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCC--cchhheeeeeccC
Confidence            35677888999999999998721            267888889999999999888777777666  5599999988544


Q ss_pred             C--CeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCC---------------CCceeeec
Q 022870           76 L--NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN---------------EPKDCYER  138 (291)
Q Consensus        76 ~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~  138 (291)
                      .  ..|++-....+|-+||..+++..++.  ...........+.+...........+               ..+..+.+
T Consensus       123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~--~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI  200 (1062)
T KOG1912|consen  123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKY--DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQI  200 (1062)
T ss_pred             cchheeEEecCCcEEEEEEccCCceeecc--ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEE
Confidence            3  35666677789999999999876521  11111111111111111111111111               11111211


Q ss_pred             ccC--c-------cccccCCCCCC-----------cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCC
Q 022870          139 EVG--E-------TVDTDSLCDSK-----------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN  198 (291)
Q Consensus       139 ~~~--~-------~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  198 (291)
                      ...  .       ...........           ++|+|.-++.++++-  ...+.++|++-..++.....+       
T Consensus       201 ~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~--prellv~dle~~~~l~vvpie-------  271 (1062)
T KOG1912|consen  201 TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF--PRELLVFDLEYECCLAVVPIE-------  271 (1062)
T ss_pred             ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe--ccceEEEcchhhceeEEEEec-------
Confidence            111  0       00000000000           778898887776553  578999999988888776631       


Q ss_pred             CCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          199 FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       199 ~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                           ++..--+. +-|+.. .. .|++...||.+.+|-.+.
T Consensus       272 -----r~~akfv~-vlP~~~-rd-~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  272 -----RGGAKFVD-VLPDPR-RD-ALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             -----cCCcceeE-eccCCC-cc-eEEEEecCCeEEEEEeec
Confidence                 22222233 777743 22 899999999999997664

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.84  E-value=5.5e-08  Score=73.61  Aligned_cols=179  Identities=13%  Similarity=0.172  Sum_probs=107.2

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-E--EEEEeeecC---CcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-T--VSSSWVHSA---AHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~--~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      +|+--|+++.++.|...++++ .|=.|.+|+++-.. .  +..++.+.-   ..-|++..|+|... +.++-.+..|+|+
T Consensus       162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIr  239 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIR  239 (433)
T ss_pred             cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEE
Confidence            688999999999999888876 56789999987432 2  122222211   12488999999533 6777777789999


Q ss_pred             EEECCCCCCCCCC--ccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870           90 CWDIENGGLSSNP--SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (291)
Q Consensus        90 iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (291)
                      +-|++...+.-..  ++.....+....-++                            .....-.++.|+..|++++  +
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffs----------------------------eiIsSISDvKFs~sGryil--s  289 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFS----------------------------EIISSISDVKFSHSGRYIL--S  289 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHH----------------------------HHhhhhhceEEccCCcEEE--E
Confidence            9999954332110  111111111110000                            0000001166999998877  4


Q ss_pred             cCCcCeEEEEeCC-CcceeeEecccccCCCCCCCCCc--------ce---eeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870          168 GEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKG--------RG---MCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (291)
Q Consensus       168 g~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (291)
                      -+. -+|++||+. ..+++.+++        -|....        ..   .-..++ |+-++   . ++++|+.....++
T Consensus       290 RDy-ltvk~wD~nme~~pv~t~~--------vh~~lr~kLc~lYEnD~IfdKFec~-~sg~~---~-~v~TGsy~n~frv  355 (433)
T KOG1354|consen  290 RDY-LTVKLWDLNMEAKPVETYP--------VHEYLRSKLCSLYENDAIFDKFECS-WSGND---S-YVMTGSYNNVFRV  355 (433)
T ss_pred             ecc-ceeEEEeccccCCcceEEe--------ehHhHHHHHHHHhhccchhheeEEE-EcCCc---c-eEecccccceEEE
Confidence            432 789999994 455666655        222110        01   112333 77663   3 8999999999999


Q ss_pred             EEccC
Q 022870          236 WDIRN  240 (291)
Q Consensus       236 wd~~~  240 (291)
                      +++..
T Consensus       356 f~~~~  360 (433)
T KOG1354|consen  356 FNLAR  360 (433)
T ss_pred             ecCCC
Confidence            99654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=1.3e-08  Score=81.77  Aligned_cols=174  Identities=16%  Similarity=0.171  Sum_probs=110.6

Q ss_pred             EEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCc
Q 022870           54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK  133 (291)
Q Consensus        54 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (291)
                      ..+.+|...  |..++-..  +.+-+++++.|++|++|.++...-..         ....|.+...              
T Consensus       729 ~nf~GH~~~--iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~---------~tsaCQfTY~--------------  781 (1034)
T KOG4190|consen  729 CNFTGHQEK--IRAIAAID--NENSFISASKDKTVKLWSIKPEGDEI---------GTSACQFTYQ--------------  781 (1034)
T ss_pred             ecccCcHHH--hHHHHhcc--cccceeeccCCceEEEEEeccccCcc---------ccceeeeEhh--------------
Confidence            345567644  77776666  66899999999999999997542111         0111111110              


Q ss_pred             eeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeee
Q 022870          134 DCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA  209 (291)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (291)
                                      .|..    +.|-.+.+++.  +  .||.|.+||.--++++.++...       ......+.+.+
T Consensus       782 ----------------aHkk~i~~igfL~~lr~i~--S--cD~giHlWDPFigr~Laq~~da-------pk~~a~~~ikc  834 (1034)
T KOG4190|consen  782 ----------------AHKKPIHDIGFLADLRSIA--S--CDGGIHLWDPFIGRLLAQMEDA-------PKEGAGGNIKC  834 (1034)
T ss_pred             ----------------hccCcccceeeeeccceee--e--ccCcceeecccccchhHhhhcC-------cccCCCceeEe
Confidence                            0100    33444444332  2  2789999999888877766531       11112223332


Q ss_pred             EEEecCCCCCCceEEEee-cCCCcEEEEEccCCCCceeecc-----ccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          210 VQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       210 ~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      +.  +-+   .. .+++| +...+|+++|.+. ..-...++     +..+.+.+++..+.|+.++.+-..|+|.+.|.++
T Consensus       835 l~--nv~---~~-iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  835 LE--NVD---RH-ILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             cc--cCc---ch-heeeeccchhhheeeeccc-ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence            22  111   22 44444 7789999999998 55444444     3346688999999999999999999999999999


Q ss_pred             Cceee
Q 022870          284 STVSH  288 (291)
Q Consensus       284 ~~~~~  288 (291)
                      |+++.
T Consensus       908 G~vIN  912 (1034)
T KOG4190|consen  908 GKVIN  912 (1034)
T ss_pred             Cceec
Confidence            99765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.80  E-value=1.1e-05  Score=65.81  Aligned_cols=231  Identities=14%  Similarity=0.076  Sum_probs=124.5

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccccc
Q 022870           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (291)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  108 (291)
                      .+..++.++.+|.|..+|..+|+.+...+.....  .....  .  ++..++.++.+|.|..+|.++++..++.  ....
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~--~~~p~--v--~~~~v~v~~~~g~l~ald~~tG~~~W~~--~~~~  135 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERL--SGGVG--A--DGGLVFVGTEKGEVIALDAEDGKELWRA--KLSS  135 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc--ccceE--E--cCCEEEEEcCCCEEEEEECCCCcEeeee--ccCc
Confidence            4558888999999999999999988776654321  11222  2  4578888999999999999988775521  1111


Q ss_pred             ceEEEEEeecccCccceeccCCCCceeeecccCcccccc-CCCC-------CCcccCCCCCcEEEEecCCcCeEEEEeCC
Q 022870          109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SLCD-------SKDDVPAEGPKYMAVAGEQLSEVEIWDLN  180 (291)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~g~~d~~i~~wd~~  180 (291)
                      .  ....... ...........+....++...++..-.. ....       ...... + ..++  .+..++.+..+|.+
T Consensus       136 ~--~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~--~~~~~g~v~ald~~  208 (377)
T TIGR03300       136 E--VLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVL--VGFAGGKLVALDLQ  208 (377)
T ss_pred             e--eecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEE--EECCCCEEEEEEcc
Confidence            1  0000000 0111111122233344444433322111 0000       001111 2 2333  45557999999999


Q ss_pred             CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEe
Q 022870          181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI  260 (291)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~  260 (291)
                      +++.+.......  + .+... .. ....+. -+|.-. +. .+++++.+|.++.||.++ ++.+.....  ........
T Consensus       209 tG~~~W~~~~~~--~-~g~~~-~~-~~~~~~-~~p~~~-~~-~vy~~~~~g~l~a~d~~t-G~~~W~~~~--~~~~~p~~  277 (377)
T TIGR03300       209 TGQPLWEQRVAL--P-KGRTE-LE-RLVDVD-GDPVVD-GG-QVYAVSYQGRVAALDLRS-GRVLWKRDA--SSYQGPAV  277 (377)
T ss_pred             CCCEeeeecccc--C-CCCCc-hh-hhhccC-CccEEE-CC-EEEEEEcCCEEEEEECCC-CcEEEeecc--CCccCceE
Confidence            998765543100  0 00000 00 000000 011101 22 677788899999999998 766655542  11222233


Q ss_pred             ecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          261 DESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       261 ~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      .  +..++.++.||.+..+|..+++.+
T Consensus       278 ~--~~~vyv~~~~G~l~~~d~~tG~~~  302 (377)
T TIGR03300       278 D--DNRLYVTDADGVVVALDRRSGSEL  302 (377)
T ss_pred             e--CCEEEEECCCCeEEEEECCCCcEE
Confidence            3  346777888999999999988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.77  E-value=3e-08  Score=75.03  Aligned_cols=131  Identities=15%  Similarity=0.216  Sum_probs=88.8

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC-----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      -++.|.++.|...+++++.|+.+|.|...|+..+     .+...+ -|...  |+++..... ++.+|++.+.+|.|++|
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ss--vtslq~Lq~-s~q~LmaS~M~gkikLy  326 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSS--VTSLQILQF-SQQKLMASDMTGKIKLY  326 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcc--hhhhhhhcc-ccceEeeccCcCceeEe
Confidence            4577999999998899999999999999999754     333333 35544  888876653 44889999999999999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (291)
                      |.+.-++..    .+.....+........                                 +-..+... .++ +++.|
T Consensus       327 D~R~~K~~~----~V~qYeGHvN~~a~l~---------------------------------~~v~~eeg-~I~-s~GdD  367 (425)
T KOG2695|consen  327 DLRATKCKK----SVMQYEGHVNLSAYLP---------------------------------AHVKEEEG-SIF-SVGDD  367 (425)
T ss_pred             eehhhhccc----ceeeeecccccccccc---------------------------------cccccccc-eEE-EccCe
Confidence            999766522    1111111111000000                                 12344443 344 46669


Q ss_pred             CeEEEEeCCCcceeeEecc
Q 022870          172 SEVEIWDLNTAERCTRLHQ  190 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~  190 (291)
                      ...++|.++.++.+.+++.
T Consensus       368 cytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  368 CYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             eEEEEEecccCceeeccCC
Confidence            9999999999999888874

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=4.9e-06  Score=67.31  Aligned_cols=235  Identities=13%  Similarity=0.184  Sum_probs=136.1

Q ss_pred             eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-----------CCeEEE
Q 022870           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-----------DGTVKC   90 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----------dg~i~i   90 (291)
                      +-+.|||.|.||+|--.-| |.+|-=++-..++.+. |.   .|.-+.|||  ..++|+|=+.           -..++|
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp---~Vq~idfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP---GVQFIDFSP--NEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC---CceeeecCC--ccceEEEecCCccccCcccCCCceEEE
Confidence            6689999999999987766 8899866555555553 43   389999999  8899998553           257999


Q ss_pred             EECCCCCCCCCCcccc-ccceEEEEEeecccCccceeccCCCCceeeecccCcccccc---CCCCCCcccCCCCCcEEEE
Q 022870           91 WDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD---SLCDSKDDVPAEGPKYMAV  166 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  166 (291)
                      ||+.++...+  .+.. .........+.........+-..+.++.++...........   ..+-....|+|.+..+..-
T Consensus       287 WDI~tG~lkr--sF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYw  364 (698)
T KOG2314|consen  287 WDIATGLLKR--SFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYW  364 (698)
T ss_pred             EEccccchhc--ceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEE
Confidence            9999998755  2221 22222223333333333334444455555544433322221   2222227788886433222


Q ss_pred             ecCC---cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee----------cCCCcE
Q 022870          167 AGEQ---LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG----------YEDGSI  233 (291)
Q Consensus       167 ~g~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g----------~~dg~i  233 (291)
                      +-..   -..+.|-.+.+++.+++...        |    +..-..+. |-.+   |. +|+.-          +.-..+
T Consensus       365 tpe~~~~parvtL~evPs~~~iRt~nl--------f----nVsDckLh-WQk~---gd-yLcvkvdR~tK~~~~g~f~n~  427 (698)
T KOG2314|consen  365 TPETNNIPARVTLMEVPSKREIRTKNL--------F----NVSDCKLH-WQKS---GD-YLCVKVDRHTKSKVKGQFSNL  427 (698)
T ss_pred             cccccCCcceEEEEecCccceeeeccc--------e----eeeccEEE-eccC---Cc-EEEEEEEeeccccccceEeeE
Confidence            2111   12355555555554444331        1    11111222 4433   43 55432          222356


Q ss_pred             EEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC---CeEEEEEcCC
Q 022870          234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDH  283 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vw~~~~  283 (291)
                      .|+.++...-++..+.- ...|...+|.|.|..+++-+..   .++.+|.+++
T Consensus       428 eIfrireKdIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  428 EIFRIREKDIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             EEEEeeccCCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence            77777764556666553 6789999999999988765543   5788888873

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.73  E-value=1.4e-05  Score=61.30  Aligned_cols=229  Identities=9%  Similarity=0.070  Sum_probs=125.7

Q ss_pred             CCeEEEEeCCCCe-EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC---CeEEEEECCC--CCCCCCCccccccceEE
Q 022870           39 GGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIEN--GGLSSNPSLTIKTNSYH  112 (291)
Q Consensus        39 dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~--~~~~~~~~~~~~~~~~~  112 (291)
                      +.-|.+|++.+.. .+..++.-......+-|+|+|  +.+.|+++-.+   |.|.-|.++.  +++...-.......+..
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            4569999987321 111111111113479999999  88888887654   6787777765  33321001111222212


Q ss_pred             EEEeecccCccceeccCCCCceeeecccCccc---------------cccCCCCCC-cccCCCCCcEEEEecCCcCeEEE
Q 022870          113 FCKLSLVKEPYANAKQANEPKDCYEREVGETV---------------DTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~~  176 (291)
                      ...++........+....+...++.++....+               ..+-..|.. ..+.|++++++++.-..| .|.+
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~  171 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFL  171 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEE
Confidence            22222222233334444555555554332111               111112222 778999988887655544 6999


Q ss_pred             EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc-----
Q 022870          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-----  251 (291)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h-----  251 (291)
                      |++..++....-+.        +.. ...-..-+. |+|+   ++...++.--+++|.+|........+..++.+     
T Consensus       172 y~~~dg~L~~~~~~--------~v~-~G~GPRHi~-FHpn---~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~  238 (346)
T COG2706         172 YDLDDGKLTPADPA--------EVK-PGAGPRHIV-FHPN---GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE  238 (346)
T ss_pred             EEcccCcccccccc--------ccC-CCCCcceEE-EcCC---CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence            99997765433221        111 111223343 9998   55333444568999999998743444444432     


Q ss_pred             ----ccceeEEEeecCCCeeEEecC-CCeEEEEEcCC
Q 022870          252 ----LEPVLCLSIDESCNGGISGGA-DQKIVLYNLDH  283 (291)
Q Consensus       252 ----~~~v~~~~~~~~~~~l~s~s~-dg~i~vw~~~~  283 (291)
                          ......|..+++|++|.++.. ...|-++.+..
T Consensus       239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence                235567778999999977653 34788887764

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=4.2e-06  Score=70.53  Aligned_cols=166  Identities=18%  Similarity=0.202  Sum_probs=103.7

Q ss_pred             EecCCccceeEEEEcCC-------------CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeec---CCC
Q 022870           13 VLRGHRASVTDVCFHQT-------------KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS---IGL   76 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~-------------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~   76 (291)
                      .|..|.+.|.-..+..+             |.+++||+.||+|.|-.+.+.+...++..+   .++.+++++|.   +..
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~---rpiksial~Pd~~~~~s  129 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK---RPIKSIALHPDFSRQQS  129 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC---CcceeEEeccchhhhhh
Confidence            45667777776666555             999999999999999999888887777655   56999999992   124


Q ss_pred             CeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCccc
Q 022870           77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV  156 (291)
Q Consensus        77 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (291)
                      +++++|+.-| +.++.-+-.......+..-..++...                                          .
T Consensus       130 k~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~------------------------------------------i  166 (846)
T KOG2066|consen  130 KQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHS------------------------------------------I  166 (846)
T ss_pred             hheeecCcce-EEEehhhhhcCccceeeecCccceEE------------------------------------------E
Confidence            6899999988 77765432111110001111111111                                          2


Q ss_pred             CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (291)
                      +..| +++|-+ + |--|++||+.+.+.+..++.+.      ...+.......+. |.++.     .|+.|-.| +|+|.
T Consensus       167 ~W~g-~lIAWa-n-d~Gv~vyd~~~~~~l~~i~~p~------~~~R~e~fpphl~-W~~~~-----~LVIGW~d-~v~i~  230 (846)
T KOG2066|consen  167 KWRG-NLIAWA-N-DDGVKVYDTPTRQRLTNIPPPS------QSVRPELFPPHLH-WQDED-----RLVIGWGD-SVKIC  230 (846)
T ss_pred             EecC-cEEEEe-c-CCCcEEEeccccceeeccCCCC------CCCCcccCCCceE-ecCCC-----eEEEecCC-eEEEE
Confidence            2334 455543 3 3459999999998888777532      1111122233344 77652     57777655 68888


Q ss_pred             EccC
Q 022870          237 DIRN  240 (291)
Q Consensus       237 d~~~  240 (291)
                      .++.
T Consensus       231 ~I~~  234 (846)
T KOG2066|consen  231 SIKK  234 (846)
T ss_pred             EEec
Confidence            8873

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=7.5e-07  Score=70.00  Aligned_cols=229  Identities=13%  Similarity=0.068  Sum_probs=141.2

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecC-CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCC
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG   86 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg   86 (291)
                      +.+..++.|-..|.+++.+-++.++.|.+. |..++++|+++-..+..++...-+..+ ++..++...-..++ +.-.++
T Consensus        44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg  122 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSG  122 (558)
T ss_pred             eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCC
Confidence            345667789999999999999999999777 999999999887665444433322112 22223310001333 444678


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (291)
                      .+.++|-....+.......++..+...                                        +.+++.+...+  
T Consensus       123 ~i~VvD~~~d~~q~~~fkklH~sPV~~----------------------------------------i~y~qa~Ds~v--  160 (558)
T KOG0882|consen  123 KIFVVDGFGDFCQDGYFKKLHFSPVKK----------------------------------------IRYNQAGDSAV--  160 (558)
T ss_pred             CcEEECCcCCcCccceecccccCceEE----------------------------------------EEeecccccee--
Confidence            999999876654321111222223222                                        22445555444  


Q ss_pred             ecCCcCeEEEEeCCC------cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          167 AGEQLSEVEIWDLNT------AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      +....|.|.-|....      .+....++.  .....+. ........++. |+|++.    .+.+-+.|..|++++.++
T Consensus       161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~--eTdLy~f-~K~Kt~pts~E-fsp~g~----qistl~~DrkVR~F~~Kt  232 (558)
T KOG0882|consen  161 SIDISGMVEYWSAEGPFQFPRTNLNFELKH--ETDLYGF-PKAKTEPTSFE-FSPDGA----QISTLNPDRKVRGFVFKT  232 (558)
T ss_pred             eccccceeEeecCCCcccCccccccccccc--cchhhcc-cccccCccceE-EccccC----cccccCcccEEEEEEecc
Confidence            666678899998763      111111110  0001111 11344566776 999844    788888999999999987


Q ss_pred             CCCceeec--------------------------------ccccc-ceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          241 PGIPLTAM--------------------------------KVHLE-PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       241 ~~~~~~~~--------------------------------~~h~~-~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                       ++.++.+                                ..|.. .-+.+.|+..+++|+-++-=| |+|.++.++++.
T Consensus       233 -GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~  310 (558)
T KOG0882|consen  233 -GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV  310 (558)
T ss_pred             -chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence             5543222                                11222 346788999999999998776 999999999988


Q ss_pred             eee
Q 022870          288 HCV  290 (291)
Q Consensus       288 ~~~  290 (291)
                      +.+
T Consensus       311 ri~  313 (558)
T KOG0882|consen  311 RIL  313 (558)
T ss_pred             EEe
Confidence            754

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.68  E-value=4.5e-06  Score=70.20  Aligned_cols=254  Identities=13%  Similarity=0.074  Sum_probs=150.4

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC----------CCCeEEEEeCCC
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI----------GLNKVISQGRDG   86 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~l~s~~~dg   86 (291)
                      |...-.++.|+|.| ++|-|+. ..|.+-|..+-+.+.+++.|...  |+.+.|.|..          ..-+|+++...|
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~--V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSA--VTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccc--eeEEEeccCCCchhccCccccceeEEeccccC
Confidence            44446789999998 7777765 47889999999999999999855  9999998721          112567888899


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeeccc--C-ccceeccCCCCceeeecccCccccccCCCCCC---cccCCCC
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK--E-PYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEG  160 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  160 (291)
                      .|.+||......+.  -+..+..+.....+-+..  + ....++........|+...+...-..-.+|..   +.+.|..
T Consensus        90 rIil~d~~~~s~~~--~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd  167 (1062)
T KOG1912|consen   90 RIILVDFVLASVIN--WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD  167 (1062)
T ss_pred             cEEEEEehhhhhhh--hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCC
Confidence            99999998776543  112222222222221111  1 12233444455556666666555444445544   5567777


Q ss_pred             CcEEEEecCCcCeEEEEeCCC-cc---e--eeEecccccCC-------C--CCCCC-C----cceeeeeEEEecCCCCCC
Q 022870          161 PKYMAVAGEQLSEVEIWDLNT-AE---R--CTRLHQNSCGG-------S--PNFSS-K----GRGMCMAVQAYLPSKSQG  220 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~-~~---~--~~~~~~~~~~~-------~--~~~~~-~----~~~~~~~~~~~~p~~~~g  220 (291)
                      ..-+.+.|+ .|.+.+-+.-. .+   +  ...+..++...       .  ..+.. +    ....+...+ |+|.-   
T Consensus       168 ~rh~~~l~s-~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~fa-f~p~~---  242 (1062)
T KOG1912|consen  168 SRHFCVLGS-KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFA-FSPHW---  242 (1062)
T ss_pred             cceEEEEcc-CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhh-cChhh---
Confidence            666666676 46666665421 11   1  12222110000       0  00000 0    011123343 77762   


Q ss_pred             ceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEe--ecCCCeeEEecCCCeEEEEEcCC
Q 022870          221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      + .++-......+.++|++- ..++....-..+.+.-+.|  +|+...|.+.-.||.+.+|-...
T Consensus       243 r-n~lfi~~prellv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  243 R-NILFITFPRELLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             h-ceEEEEeccceEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            2 233334567899999997 6777776655555555666  66666899999999999997655

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.68  E-value=1.7e-05  Score=60.25  Aligned_cols=183  Identities=15%  Similarity=0.101  Sum_probs=107.3

Q ss_pred             CCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEee
Q 022870           38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (291)
Q Consensus        38 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (291)
                      .+|+|..||..+|+.+.............+... +  ++..+++++.++.|..||..+++...+  ........      
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~l~~~d~~tG~~~W~--~~~~~~~~------   69 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P--DGGRVYVASGDGNLYALDAKTGKVLWR--FDLPGPIS------   69 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E--ETTEEEEEETTSEEEEEETTTSEEEEE--EECSSCGG------
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEE-E--eCCEEEEEcCCCEEEEEECCCCCEEEE--eecccccc------
Confidence            378999999999999988865221111222223 2  347788888999999999998876441  11100000      


Q ss_pred             cccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCC
Q 022870          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP  197 (291)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  197 (291)
                                                          ......+..+++.+  .++.++.+|..+++.+.....       
T Consensus        70 ------------------------------------~~~~~~~~~v~v~~--~~~~l~~~d~~tG~~~W~~~~-------  104 (238)
T PF13360_consen   70 ------------------------------------GAPVVDGGRVYVGT--SDGSLYALDAKTGKVLWSIYL-------  104 (238)
T ss_dssp             ------------------------------------SGEEEETTEEEEEE--TTSEEEEEETTTSCEEEEEEE-------
T ss_pred             ------------------------------------ceeeeccccccccc--ceeeeEecccCCcceeeeecc-------
Confidence                                                00011233455433  467999999999998887421       


Q ss_pred             CCCCCcc-eeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccce-----------eEEEeecCCC
Q 022870          198 NFSSKGR-GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV-----------LCLSIDESCN  265 (291)
Q Consensus       198 ~~~~~~~-~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v-----------~~~~~~~~~~  265 (291)
                      ....... ....... +.     +. .++++..++.|..+|+++ ++.+..........           ..+.+. ++ 
T Consensus       105 ~~~~~~~~~~~~~~~-~~-----~~-~~~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  174 (238)
T PF13360_consen  105 TSSPPAGVRSSSSPA-VD-----GD-RLYVGTSSGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-  174 (238)
T ss_dssp             -SSCTCSTB--SEEE-EE-----TT-EEEEEETCSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-
T ss_pred             ccccccccccccCce-Ee-----cC-EEEEEeccCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEE-CC-
Confidence            1111111 1111111 22     22 788888899999999999 88877766533221           222333 34 


Q ss_pred             eeEEecCCCe-EEEEEcCCCcee
Q 022870          266 GGISGGADQK-IVLYNLDHSTVS  287 (291)
Q Consensus       266 ~l~s~s~dg~-i~vw~~~~~~~~  287 (291)
                      .+..++.++. +.+ |+.+++.+
T Consensus       175 ~v~~~~~~g~~~~~-d~~tg~~~  196 (238)
T PF13360_consen  175 RVYVSSGDGRVVAV-DLATGEKL  196 (238)
T ss_dssp             EEEEECCTSSEEEE-ETTTTEEE
T ss_pred             EEEEEcCCCeEEEE-ECCCCCEE
Confidence            5666666775 555 99988743

...

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.68  E-value=1.2e-05  Score=70.94  Aligned_cols=243  Identities=10%  Similarity=0.042  Sum_probs=131.1

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      .+.|.++.|..+.+.++.+..+|.|.+-|.++...... ..-.  .+|.+++|+|  |+..++.....++|.+-.-. ..
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-g~vd--~GI~aaswS~--Dee~l~liT~~~tll~mT~~-f~  141 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-GNVD--NGISAASWSP--DEELLALITGRQTLLFMTKD-FE  141 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeee-eecc--CceEEEeecC--CCcEEEEEeCCcEEEEEecc-cc
Confidence            36899999999998899999999999998876543322 1222  5599999999  98999888888887665432 11


Q ss_pred             CCC-CCccccccceEEEE-EeecccCccceecc-CCCCceeeecccCccccc--cCCCCCC-cccCCCCCcEEEE--ecC
Q 022870           98 LSS-NPSLTIKTNSYHFC-KLSLVKEPYANAKQ-ANEPKDCYEREVGETVDT--DSLCDSK-DDVPAEGPKYMAV--AGE  169 (291)
Q Consensus        98 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~--~g~  169 (291)
                      .+. +++   ........ .....+........ ..+...-...........  ....|.. ++|-.||+++.+.  +..
T Consensus       142 ~i~E~~L---~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~  218 (1265)
T KOG1920|consen  142 PIAEKPL---DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE  218 (1265)
T ss_pred             chhcccc---ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence            111 111   00000000 00000000000000 000000000000000000  1112222 8888999765431  112


Q ss_pred             Cc-CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee---cCCCcEEEEEccCC--CC
Q 022870          170 QL-SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNP--GI  243 (291)
Q Consensus       170 ~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~~--~~  243 (291)
                      .+ +.+++||-+ +.. ....           .+..+.-.++. |.|.++    .+++-   .+|+.|.+|..+-.  +.
T Consensus       219 ~~~RkirV~drE-g~L-ns~s-----------e~~~~l~~~Ls-WkPsgs----~iA~iq~~~sd~~IvffErNGL~hg~  280 (1265)
T KOG1920|consen  219 TGTRKIRVYDRE-GAL-NSTS-----------EPVEGLQHSLS-WKPSGS----LIAAIQCKTSDSDIVFFERNGLRHGE  280 (1265)
T ss_pred             CCceeEEEeccc-chh-hccc-----------Cccccccccee-ecCCCC----eEeeeeecCCCCcEEEEecCCccccc
Confidence            23 789999987 432 2211           11233444555 999743    56554   35668999986521  11


Q ss_pred             ceeeccccccceeEEEeecCCCeeEE---ecCCCeEEEEEcCCCcee
Q 022870          244 PLTAMKVHLEPVLCLSIDESCNGGIS---GGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s---~s~dg~i~vw~~~~~~~~  287 (291)
                      ....+.....+|..++|+.++..||.   ......|++|-+.+....
T Consensus       281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY  327 (1265)
T KOG1920|consen  281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWY  327 (1265)
T ss_pred             cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEE
Confidence            12223333445999999999988877   555556999988775543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.65  E-value=1.5e-05  Score=65.44  Aligned_cols=226  Identities=11%  Similarity=0.045  Sum_probs=119.5

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccc
Q 022870           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (291)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  109 (291)
                      +..++.++.+|.+..+|.++|+.+.+.+...   .+.+--..   .+..++.+..++.|.-+|.++++...+........
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~  193 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL  193 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence            4467778889999999999999887766442   13221111   23577778889999999999998765221110000


Q ss_pred             eEEEEEeecccC-ccceeccCCCCceeeecccCccccc-cCCC----CC-----CcccCC--CCCcEEEEecCCcCeEEE
Q 022870          110 SYHFCKLSLVKE-PYANAKQANEPKDCYEREVGETVDT-DSLC----DS-----KDDVPA--EGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus       110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~-----~~~~~~--~~~~~~~~~g~~d~~i~~  176 (291)
                      .... ..++... .........+....++....+..-. ....    ..     .+..+|  .+..+++  ++.+|.+..
T Consensus       194 ~~~~-~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~--~~~~g~l~a  270 (394)
T PRK11138        194 TLRG-ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA--LAYNGNLVA  270 (394)
T ss_pred             cccC-CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE--EEcCCeEEE
Confidence            0000 0000000 0001111111122223222221111 0000    00     011122  2344553  334799999


Q ss_pred             EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc-cce
Q 022870          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-EPV  255 (291)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-~~v  255 (291)
                      +|..+++.+.+...       +.   ..    .+. ..     +. .++.++.+|.+..+|..+ ++.+.....-. ...
T Consensus       271 ld~~tG~~~W~~~~-------~~---~~----~~~-~~-----~~-~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~  328 (394)
T PRK11138        271 LDLRSGQIVWKREY-------GS---VN----DFA-VD-----GG-RIYLVDQNDRVYALDTRG-GVELWSQSDLLHRLL  328 (394)
T ss_pred             EECCCCCEEEeecC-------CC---cc----CcE-EE-----CC-EEEEEcCCCeEEEEECCC-CcEEEcccccCCCcc
Confidence            99999987665442       10   01    111 22     22 677888999999999988 66554432111 112


Q ss_pred             eEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          256 LCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      .+....  +.+|+.++.||.+...|.++++++-
T Consensus       329 ~sp~v~--~g~l~v~~~~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        329 TAPVLY--NGYLVVGDSEGYLHWINREDGRFVA  359 (394)
T ss_pred             cCCEEE--CCEEEEEeCCCEEEEEECCCCCEEE
Confidence            222222  3367888899999999999998764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.63  E-value=2.8e-05  Score=63.88  Aligned_cols=177  Identities=10%  Similarity=0.058  Sum_probs=100.1

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCe-EEEEeC---CCeEEEEECCCCCCCCCCccccccceEEEEE
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFCK  115 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
                      ..|.+-|....+ .+.+....   ....-.|+|  +|+. ++..+.   +..|.++|+.+++...  +.........   
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~---~~~~p~wSp--DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--lt~~~g~~~~---  237 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGG---LNIFPKWAN--KEQTAFYYTSYGERKPTLYKYNLYTGKKEK--IASSQGMLVV---  237 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCC---CeEeEEECC--CCCcEEEEEEccCCCCEEEEEECCCCcEEE--EecCCCcEEe---
Confidence            456665654333 33333222   378999999  9874 554333   3568889998775321  1111111100   


Q ss_pred             eecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec-CCcCeEEEEeCCCcceeeEecccccC
Q 022870          116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSCG  194 (291)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~~wd~~~~~~~~~~~~~~~~  194 (291)
                                                            ..|+|||+.++++.. ..+..|.++|+.+++. ..+..    
T Consensus       238 --------------------------------------~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~----  274 (419)
T PRK04043        238 --------------------------------------SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITN----  274 (419)
T ss_pred             --------------------------------------eEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEccc----
Confidence                                                  338999988776433 2245688889887763 33431    


Q ss_pred             CCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC--cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecC
Q 022870          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA  272 (291)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~  272 (291)
                          +..    ...... |+|+   |+.++++....|  .|+++|+.+ ++....... ...  ...|+|+|+.|+-.+.
T Consensus       275 ----~~~----~d~~p~-~SPD---G~~I~F~Sdr~g~~~Iy~~dl~~-g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        275 ----YPG----IDVNGN-FVED---DKRIVFVSDRLGYPNIFMKKLNS-GSVEQVVFH-GKN--NSSVSTYKNYIVYSSR  338 (419)
T ss_pred             ----CCC----ccCccE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCeEeCccC-CCc--CceECCCCCEEEEEEc
Confidence                111    112223 9998   543444444444  688888876 443222221 111  2489999999876654


Q ss_pred             C---------CeEEEEEcCCCce
Q 022870          273 D---------QKIVLYNLDHSTV  286 (291)
Q Consensus       273 d---------g~i~vw~~~~~~~  286 (291)
                      .         ..|.+.|++++..
T Consensus       339 ~~~~~~~~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        339 ETNNEFGKNTFNLYLISTNSDYI  361 (419)
T ss_pred             CCCcccCCCCcEEEEEECCCCCe
Confidence            3         3688888887764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.55  E-value=6.3e-07  Score=72.96  Aligned_cols=77  Identities=16%  Similarity=0.195  Sum_probs=63.6

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~   95 (291)
                      .....|.|++++|+...|+.|+.||.|.+||...+..... + ..-  ..+.++|+|  +|..+++|+..|.+.+||+.-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a~~--~P~~iaWHp--~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-AEF--IPTLIAWHP--DGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-ecc--cceEEEEcC--CCcEEEEEcCCceEEEEEeec
Confidence            4678899999999999999999999999999876533322 2 222  268999999  999999999999999999876


Q ss_pred             CCC
Q 022870           96 GGL   98 (291)
Q Consensus        96 ~~~   98 (291)
                      ...
T Consensus       331 spi  333 (545)
T PF11768_consen  331 SPI  333 (545)
T ss_pred             Ccc
Confidence            543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=1.1e-07  Score=80.83  Aligned_cols=206  Identities=12%  Similarity=0.148  Sum_probs=117.5

Q ss_pred             EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCC
Q 022870           52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE  131 (291)
Q Consensus        52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (291)
                      ..+++..+.  ...+|++|+.  +.+.|+.|+..|.|+++++.++....  ....+........-+..++..........
T Consensus      1093 ~w~~frd~~--~~fTc~afs~--~~~hL~vG~~~Geik~~nv~sG~~e~--s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1093 SWRSFRDET--ALFTCIAFSG--GTNHLAVGSHAGEIKIFNVSSGSMEE--SVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred             cchhhhccc--cceeeEEeec--CCceEEeeeccceEEEEEccCccccc--cccccccccccccccCCcceeeeeccccC
Confidence            344555565  4499999999  88999999999999999999886543  11222222111111111111111111111


Q ss_pred             -CceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeE
Q 022870          132 -PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV  210 (291)
Q Consensus       132 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (291)
                       ....|+..........+.+...+.|+..-..-+  .|.......+||+.++..+.++-.       +........ ...
T Consensus      1167 PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~--~gt~~d~a~~YDvqT~~~l~tylt-------~~~~~~y~~-n~a 1236 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRA--LGTEADDALLYDVQTCSPLQTYLT-------DTVTSSYSN-NLA 1236 (1516)
T ss_pred             chHHHhccccccCccccccccceeehhhhHHHHH--hcccccceEEEecccCcHHHHhcC-------cchhhhhhc-ccc
Confidence             223344433222222233322266765533223  233345789999999988777432       111111111 223


Q ss_pred             EEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       211 ~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                       .|+|+.   . .++   .||  .+||++. .+.++.|......+. =.|+|+|+.++.-+     .|||+++.++++.+
T Consensus      1237 -~FsP~D---~-LIl---ndG--vLWDvR~-~~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1237 -HFSPCD---T-LIL---NDG--VLWDVRI-PEAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred             -ccCCCc---c-eEe---eCc--eeeeecc-HHHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHHHHHHhcC
Confidence             499983   2 333   344  3899998 577777765443322 35899999988865     48999999988765

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.54  E-value=3.6e-08  Score=80.54  Aligned_cols=205  Identities=19%  Similarity=0.196  Sum_probs=119.6

Q ss_pred             ccceeEEEEcC--CCCEEEEecCCCeEEEEeCCCCeE--EEEEeeecCCcceEEEEEeecCCCCeEEEEe----CCCeEE
Q 022870           18 RASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG----RDGTVK   89 (291)
Q Consensus        18 ~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----~dg~i~   89 (291)
                      ...+.|+++.-  +..+++.|..+|.|.+-.+....-  ......+.  .++++++|++. |.+.|++|-    .|..+.
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a--r~Ct~lAwneL-Dtn~LAagldkhrnds~~~  132 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYA--RPCTSLAWNEL-DTNHLAAGLDKHRNDSSLK  132 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccc--ccccccccccc-cHHHHHhhhhhhcccCCcc
Confidence            34567777654  446889999999999988764321  22233444  55999999995 546666653    256799


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (291)
                      |||+.+.-........+...                                     ...+...++|-.+.+.++  +|.
T Consensus       133 Iwdi~s~ltvPke~~~fs~~-------------------------------------~l~gqns~cwlrd~klvl--aGm  173 (783)
T KOG1008|consen  133 IWDINSLLTVPKESPLFSSS-------------------------------------TLDGQNSVCWLRDTKLVL--AGM  173 (783)
T ss_pred             ceecccccCCCccccccccc-------------------------------------cccCccccccccCcchhh--ccc
Confidence            99998762211000000000                                     000000155665544433  677


Q ss_pred             CcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE-ccCCCCceee
Q 022870          170 QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD-IRNPGIPLTA  247 (291)
Q Consensus       170 ~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd-~~~~~~~~~~  247 (291)
                      ..+.++++|++... ....+..          ....+..  +..|+|+      ++++-. ||.|.+|| .++...++..
T Consensus       174 ~sr~~~ifdlRqs~~~~~svnT----------k~vqG~t--Vdp~~~n------Y~cs~~-dg~iAiwD~~rnienpl~~  234 (783)
T KOG1008|consen  174 TSRSVHIFDLRQSLDSVSSVNT----------KYVQGIT--VDPFSPN------YFCSNS-DGDIAIWDTYRNIENPLQI  234 (783)
T ss_pred             ccchhhhhhhhhhhhhhhhhhh----------hhcccce--ecCCCCC------ceeccc-cCceeeccchhhhccHHHH
Confidence            77899999998432 2222221          0112221  1125554      666655 99999999 6654566666


Q ss_pred             cccccc----ceeEEEeecCCC-eeEEecCC-CeEEEEEcCC
Q 022870          248 MKVHLE----PVLCLSIDESCN-GGISGGAD-QKIVLYNLDH  283 (291)
Q Consensus       248 ~~~h~~----~v~~~~~~~~~~-~l~s~s~d-g~i~vw~~~~  283 (291)
                      +.....    .+..++|.|... .+++...| ++|+++++..
T Consensus       235 i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  235 ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            553333    389999977432 34555544 7899998753

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.53  E-value=0.00019  Score=55.11  Aligned_cols=209  Identities=9%  Similarity=0.037  Sum_probs=116.2

Q ss_pred             eeEEEEcC-CCCEEEEecCCCe-EEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-----CCeEEEEEC
Q 022870           21 VTDVCFHQ-TKPILFAGTTGGE-LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-----DGTVKCWDI   93 (291)
Q Consensus        21 v~~l~~~~-~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~   93 (291)
                      ...++.+| .+..++.+-.-|+ ..+||..+++....+........--.-.|++  ||++|++.-.     .|.|-|||.
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~--dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP--DGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC--CCCEEEEeccccCCCcEEEEEEEC
Confidence            34577888 5666777766655 6789999999888776544321223567999  9999998644     478999999


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC----
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE----  169 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----  169 (291)
                      ... ..+  +-++.........                                      +.+.|||+.++++-|.    
T Consensus        85 ~~~-~~r--i~E~~s~GIGPHe--------------------------------------l~l~pDG~tLvVANGGI~Th  123 (305)
T PF07433_consen   85 ARG-YRR--IGEFPSHGIGPHE--------------------------------------LLLMPDGETLVVANGGIETH  123 (305)
T ss_pred             cCC-cEE--EeEecCCCcChhh--------------------------------------EEEcCCCCEEEEEcCCCccC
Confidence            822 211  1122211110000                                      3355555555544332    


Q ss_pred             ------------CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCC-----
Q 022870          170 ------------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG-----  231 (291)
Q Consensus       170 ------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg-----  231 (291)
                                  .+.++...|.++++.+.+.....    .-|    ...+--++ +.++   |.  ++.|. ..|     
T Consensus       124 pd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~----~~~----~lSiRHLa-~~~~---G~--V~~a~Q~qg~~~~~  189 (305)
T PF07433_consen  124 PDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP----DLH----QLSIRHLA-VDGD---GT--VAFAMQYQGDPGDA  189 (305)
T ss_pred             cccCceecChhhcCCceEEEecCCCceeeeeecCc----ccc----ccceeeEE-ecCC---Cc--EEEEEecCCCCCcc
Confidence                        23456666777777666543200    011    11122222 4444   32  22222 111     


Q ss_pred             --cEEEEEccCCCCceee-------ccccccceeEEEeecCCCeeEEec-CCCeEEEEEcCCCceeee
Q 022870          232 --SILVWDIRNPGIPLTA-------MKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       232 --~i~vwd~~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~~~~~~~~~  289 (291)
                        -|.+++..   ..+..       ...-.+.+-+|++++++.+++..| .-|.+.+||..+++++..
T Consensus       190 ~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~  254 (305)
T PF07433_consen  190 PPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS  254 (305)
T ss_pred             CCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence              12233222   11111       222346788999999998775444 578999999999998754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=1.6e-05  Score=67.66  Aligned_cols=208  Identities=14%  Similarity=0.181  Sum_probs=117.9

Q ss_pred             EEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe-----EEEEECCCCCCC
Q 022870           25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT-----VKCWDIENGGLS   99 (291)
Q Consensus        25 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~   99 (291)
                      +|++.+..++.|+.+|.|.+.+ ..-+.++.++.+... -|..+....  +.++|++.+.|+.     |++||++..+..
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~s-iv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQS-IVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchh-hhhHhhccc--CceEEEEEeecCCCCceEEEEecccccCCC
Confidence            4567777999999999998887 345555778877642 244443333  4468888777654     999999865321


Q ss_pred             CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeC
Q 022870          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL  179 (291)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~  179 (291)
                      ..|... ..+......+.....|...                            ++.+.+-.  .+++|-.+|.|.++.-
T Consensus       106 ~sP~c~-~~~ri~~~~np~~~~p~s~----------------------------l~Vs~~l~--~Iv~Gf~nG~V~~~~G  154 (933)
T KOG2114|consen  106 NSPQCL-YEHRIFTIKNPTNPSPASS----------------------------LAVSEDLK--TIVCGFTNGLVICYKG  154 (933)
T ss_pred             CCccee-eeeeeeccCCCCCCCcceE----------------------------EEEEcccc--EEEEEecCcEEEEEcC
Confidence            101000 0000000000000000000                            44555533  3337989999999843


Q ss_pred             C--Ccc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce-eeccccccce
Q 022870          180 N--TAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TAMKVHLEPV  255 (291)
Q Consensus       180 ~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~h~~~v  255 (291)
                      .  ..+ ....+.           .+...+++.+. |..+   +...+.+++ ...|.+|.+.. ..|. ..+..|...+
T Consensus       155 Di~RDrgsr~~~~-----------~~~~~pITgL~-~~~d---~~s~lFv~T-t~~V~~y~l~g-r~p~~~~ld~~G~~l  217 (933)
T KOG2114|consen  155 DILRDRGSRQDYS-----------HRGKEPITGLA-LRSD---GKSVLFVAT-TEQVMLYSLSG-RTPSLKVLDNNGISL  217 (933)
T ss_pred             cchhccccceeee-----------ccCCCCceeeE-EecC---CceeEEEEe-cceeEEEEecC-CCcceeeeccCCccc
Confidence            2  111 111111           22356788887 7766   332233333 34699999985 3344 4477788899


Q ss_pred             eEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          256 LCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      ++-.+++....+++++. ..+.+|+....+
T Consensus       218 nCss~~~~t~qfIca~~-e~l~fY~sd~~~  246 (933)
T KOG2114|consen  218 NCSSFSDGTYQFICAGS-EFLYFYDSDGRG  246 (933)
T ss_pred             eeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence            99999776665666553 458888877544

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.49  E-value=3.2e-06  Score=72.27  Aligned_cols=153  Identities=20%  Similarity=0.191  Sum_probs=103.6

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC---------CCeEEE
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---------DGTVKC   90 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~i   90 (291)
                      .|+-|+.  +++++.+|...|+|.+-|.++.+.++++..|.+.  |..+..    .|++|+++|.         |..|++
T Consensus       179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s--iSDfDv----~GNlLitCG~S~R~~~l~~D~FvkV  250 (1118)
T KOG1275|consen  179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS--ISDFDV----QGNLLITCGYSMRRYNLAMDPFVKV  250 (1118)
T ss_pred             ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccc--eeeeec----cCCeEEEeecccccccccccchhhh
Confidence            3555554  5678999999999999999999999999999966  877665    4589999886         456889


Q ss_pred             EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC
Q 022870           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (291)
                      ||++..+.+.  ...++..+  ..                                       +.|+|.=...++++.+ 
T Consensus       251 YDLRmmral~--PI~~~~~P--~f---------------------------------------lrf~Psl~t~~~V~S~-  286 (1118)
T KOG1275|consen  251 YDLRMMRALS--PIQFPYGP--QF---------------------------------------LRFHPSLTTRLAVTSQ-  286 (1118)
T ss_pred             hhhhhhhccC--CcccccCc--hh---------------------------------------hhhcccccceEEEEec-
Confidence            9999876543  11111111  00                                       4477765555554444 


Q ss_pred             cCeEEEEeCCCc-ce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          171 LSEVEIWDLNTA-ER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       171 d~~i~~wd~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      .|...+-|..+. .+ ...+.          ..+....+.++. ++++   |+ .++.|..+|.|.+|--+
T Consensus       287 sGq~q~vd~~~lsNP~~~~~~----------v~p~~s~i~~fD-iSsn---~~-alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  287 SGQFQFVDTATLSNPPAGVKM----------VNPNGSGISAFD-ISSN---GD-ALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             ccceeeccccccCCCccceeE----------EccCCCcceeEE-ecCC---Cc-eEEEecccCcEeeecCC
Confidence            588888884322 11 11111          111233467776 8887   44 99999999999999843

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=2.7e-06  Score=71.58  Aligned_cols=152  Identities=13%  Similarity=0.048  Sum_probs=105.5

Q ss_pred             cceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc
Q 022870           63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE  142 (291)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (291)
                      +.+.|++++.    ..|+-|.-+|.|++++...... .     ...+..                               
T Consensus        40 D~is~~av~~----~~~~~GtH~g~v~~~~~~~~~~-~-----~~~~s~-------------------------------   78 (846)
T KOG2066|consen   40 DAISCCAVHD----KFFALGTHRGAVYLTTCQGNPK-T-----NFDHSS-------------------------------   78 (846)
T ss_pred             hHHHHHHhhc----ceeeeccccceEEEEecCCccc-c-----cccccc-------------------------------
Confidence            3477888875    8999999999999999875421 0     000000                               


Q ss_pred             cccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC--CCCC
Q 022870          143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS--KSQG  220 (291)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~g  220 (291)
                                   -.-+|+++.  +++.||+|.|-.+-+.+...++.             ...++-+++ ++|+  ....
T Consensus        79 -------------~~~~Gey~a--sCS~DGkv~I~sl~~~~~~~~~d-------------f~rpiksia-l~Pd~~~~~s  129 (846)
T KOG2066|consen   79 -------------SILEGEYVA--SCSDDGKVVIGSLFTDDEITQYD-------------FKRPIKSIA-LHPDFSRQQS  129 (846)
T ss_pred             -------------cccCCceEE--EecCCCcEEEeeccCCccceeEe-------------cCCcceeEE-eccchhhhhh
Confidence                         123566554  78889999999988887766665             234566676 9997  2223


Q ss_pred             ceEEEeecCCCcEEEEEccCCCCcee-eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          221 FVNVLAGYEDGSILVWDIRNPGIPLT-AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      + .+++|+.-| +.++.-+=.+.... .+..-.++|.++.|..+  ++|=++.+| |+|||+.+++.+-.
T Consensus       130 k-~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~--lIAWand~G-v~vyd~~~~~~l~~  194 (846)
T KOG2066|consen  130 K-QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN--LIAWANDDG-VKVYDTPTRQRLTN  194 (846)
T ss_pred             h-heeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc--EEEEecCCC-cEEEeccccceeec
Confidence            3 789999998 87876543222222 35555789999999887  888888777 99999999887643

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.41  E-value=0.00036  Score=52.63  Aligned_cols=220  Identities=10%  Similarity=0.061  Sum_probs=111.7

Q ss_pred             EEecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           12 AVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      +.+.+-...+..|+|+|+ +.++++....+.|...+. +|+.++.+..... .-.-.|++..  ++.++++--.++.+.+
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~-~D~EgI~y~g--~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF-GDYEGITYLG--NGRYVLSEERDQRLYI   90 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-S--TTEEEEEETTTTEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC-CCceeEEEEC--CCEEEEEEcCCCcEEE
Confidence            456676777999999996 556677788899988886 5888887765432 3378888887  7666666656899999


Q ss_pred             EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC
Q 022870           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (291)
                      +++......      +.........+......                         -.+-.+++|+|.+..++++--  
T Consensus        91 ~~~~~~~~~------~~~~~~~~~~l~~~~~~-------------------------N~G~EGla~D~~~~~L~v~kE--  137 (248)
T PF06977_consen   91 FTIDDDTTS------LDRADVQKISLGFPNKG-------------------------NKGFEGLAYDPKTNRLFVAKE--  137 (248)
T ss_dssp             EEE----TT--------EEEEEEEE---S----------------------------SS--EEEEEETTTTEEEEEEE--
T ss_pred             EEEeccccc------cchhhceEEecccccCC-------------------------CcceEEEEEcCCCCEEEEEeC--
Confidence            998654321      11111111100000000                         000001789999888887532  


Q ss_pred             cCeEEEEeCCC---cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870          171 LSEVEIWDLNT---AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (291)
Q Consensus       171 d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (291)
                      ..-..+|.++.   ...+.........   . .........++. |+|.  .|+ +++....+..|..+|..  ++++..
T Consensus       138 ~~P~~l~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~d~S~l~-~~p~--t~~-lliLS~es~~l~~~d~~--G~~~~~  207 (248)
T PF06977_consen  138 RKPKRLYEVNGFPGGFDLFVSDDQDLD---D-DKLFVRDLSGLS-YDPR--TGH-LLILSDESRLLLELDRQ--GRVVSS  207 (248)
T ss_dssp             SSSEEEEEEESTT-SS--EEEE-HHHH-----HT--SS---EEE-EETT--TTE-EEEEETTTTEEEEE-TT----EEEE
T ss_pred             CCChhhEEEccccCccceeeccccccc---c-ccceeccccceE-EcCC--CCe-EEEEECCCCeEEEECCC--CCEEEE
Confidence            33455555543   1111111100000   0 000122345665 8887  255 77888889999999954  676654


Q ss_pred             ccccc---------cceeEEEeecCCCeeEEecCCCeEEEE
Q 022870          248 MKVHL---------EPVLCLSIDESCNGGISGGADQKIVLY  279 (291)
Q Consensus       248 ~~~h~---------~~v~~~~~~~~~~~l~s~s~dg~i~vw  279 (291)
                      +.-..         ...-+|+|+++|++. ..|+-+..+++
T Consensus       208 ~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~f  247 (248)
T PF06977_consen  208 LSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYRF  247 (248)
T ss_dssp             EE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEEE
T ss_pred             EEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEEe
Confidence            43211         256799999999754 44566666665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.40  E-value=0.00016  Score=55.52  Aligned_cols=56  Identities=16%  Similarity=0.242  Sum_probs=42.8

Q ss_pred             EEEcCCCCEEEEe-----cCCCeEEEEeCC-CCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           24 VCFHQTKPILFAG-----TTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        24 l~~~~~~~~l~s~-----~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      -.|++||++|++.     ...|.|-|||.. +-+.+.++..+.-  .-..+.+.|  ||..|+.+-
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI--GPHel~l~p--DG~tLvVAN  117 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGI--GPHELLLMP--DGETLVVAN  117 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCc--ChhhEEEcC--CCCEEEEEc
Confidence            5799999999885     335889999998 5577777777652  257888999  987777653

>smart00320 WD40 WD40 repeats

Probab=98.40  E-value=9.9e-07  Score=45.49  Aligned_cols=38  Identities=29%  Similarity=0.657  Sum_probs=34.9

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEe
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD   46 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd   46 (291)
                      +++..+.+|...|++++|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            56778889999999999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.39  E-value=0.00028  Score=58.04  Aligned_cols=75  Identities=17%  Similarity=0.276  Sum_probs=59.2

Q ss_pred             ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      ...+.+.+ ++|+..    .++.|+.||.|.+||... +  +..+....-.++.++|+|+|.++++|+..|.+.+||+.-
T Consensus       259 ~s~v~~ca-~sp~E~----kLvlGC~DgSiiLyD~~~-~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  259 PSQVICCA-RSPSED----KLVLGCEDGSIILYDTTR-G--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             CCcceEEe-cCcccc----eEEEEecCCeEEEEEcCC-C--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            44566665 999844    899999999999999875 3  222333455688999999999999999999999999875


Q ss_pred             Cce
Q 022870          284 STV  286 (291)
Q Consensus       284 ~~~  286 (291)
                      .-+
T Consensus       331 spi  333 (545)
T PF11768_consen  331 SPI  333 (545)
T ss_pred             Ccc
Confidence            443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.38  E-value=0.00049  Score=52.58  Aligned_cols=183  Identities=15%  Similarity=0.155  Sum_probs=105.5

Q ss_pred             eeEEEEc-CCCCEEEEecCCCeEEEEeCCCCeEEEEEeee--c-CCcceEEEEEeecCCCCeEEEEeCC--------CeE
Q 022870           21 VTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWVH--S-AAHGIVSVATGPSIGLNKVISQGRD--------GTV   88 (291)
Q Consensus        21 v~~l~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i   88 (291)
                      ...+++. +++. |+.+..++ +.++|..+++........  . .......+++.|  +|++.++....        |.|
T Consensus        42 ~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   42 PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEE
T ss_pred             CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccce
Confidence            5667777 6664 44455544 555699888655444431  1 224578999999  88877765543        446


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      ..++.. ++...  .  ....      ..+..                                 ++|+|+++.+++ +-
T Consensus       118 ~~~~~~-~~~~~--~--~~~~------~~pNG---------------------------------i~~s~dg~~lyv-~d  152 (246)
T PF08450_consen  118 YRIDPD-GKVTV--V--ADGL------GFPNG---------------------------------IAFSPDGKTLYV-AD  152 (246)
T ss_dssp             EEEETT-SEEEE--E--EEEE------SSEEE---------------------------------EEEETTSSEEEE-EE
T ss_pred             EEECCC-CeEEE--E--ecCc------ccccc---------------------------------eEECCcchheee-cc
Confidence            666655 32110  0  0000      00000                                 679999987765 45


Q ss_pred             CCcCeEEEEeCCCcce----eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          169 EQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                      +..+.|..||+.....    ...+..        . ....+..-.++ +..+   |. +.++....+.|.++|.+  ++.
T Consensus       153 s~~~~i~~~~~~~~~~~~~~~~~~~~--------~-~~~~g~pDG~~-vD~~---G~-l~va~~~~~~I~~~~p~--G~~  216 (246)
T PF08450_consen  153 SFNGRIWRFDLDADGGELSNRRVFID--------F-PGGPGYPDGLA-VDSD---GN-LWVADWGGGRIVVFDPD--GKL  216 (246)
T ss_dssp             TTTTEEEEEEEETTTCCEEEEEEEEE----------SSSSCEEEEEE-EBTT---S--EEEEEETTTEEEEEETT--SCE
T ss_pred             cccceeEEEeccccccceeeeeeEEE--------c-CCCCcCCCcce-EcCC---CC-EEEEEcCCCEEEEECCC--ccE
Confidence            5578899999864322    122210        0 00112344454 7766   55 66666678999999987  777


Q ss_pred             eeeccccccceeEEEe-ecCCCeeE
Q 022870          245 LTAMKVHLEPVLCLSI-DESCNGGI  268 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~-~~~~~~l~  268 (291)
                      +..+......+++++| .++.+.|+
T Consensus       217 ~~~i~~p~~~~t~~~fgg~~~~~L~  241 (246)
T PF08450_consen  217 LREIELPVPRPTNCAFGGPDGKTLY  241 (246)
T ss_dssp             EEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred             EEEEcCCCCCEEEEEEECCCCCEEE
Confidence            7777765568999999 45545443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.38  E-value=5.8e-05  Score=63.38  Aligned_cols=185  Identities=15%  Similarity=0.054  Sum_probs=113.7

Q ss_pred             EcCCCCEEE-EecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC----eEEEEECCCCCCCC
Q 022870           26 FHQTKPILF-AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG----TVKCWDIENGGLSS  100 (291)
Q Consensus        26 ~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~  100 (291)
                      ++|||+.+. +.-..+.+.+.|.++.+...++.....   ..-+.+++  +|.++++.+.+.    ++..-+..+.    
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgn---pd~v~~sp--dGk~afvTsyNsE~G~tl~em~a~e~----  270 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGN---LDNVDTDY--DGKYAFSTCYNSEEGVTLAEMMAAER----  270 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCC---cccceECC--CCCEEEEeccCcccCcceeeeccccC----
Confidence            445665542 233456677888887777777665432   46778888  888888776422    1211111110    


Q ss_pred             CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCC
Q 022870          101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN  180 (291)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~  180 (291)
                                .....+.+...                                .++.++|++.++  +  ++.|.+.|.+
T Consensus       271 ----------d~~vvfni~~i--------------------------------ea~vkdGK~~~V--~--gn~V~VID~~  304 (635)
T PRK02888        271 ----------DWVVVFNIARI--------------------------------EEAVKAGKFKTI--G--GSKVPVVDGR  304 (635)
T ss_pred             ----------ceEEEEchHHH--------------------------------HHhhhCCCEEEE--C--CCEEEEEECC
Confidence                      01111111100                                125677876664  2  4789999999


Q ss_pred             C-----cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC-----------c
Q 022870          181 T-----AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----------P  244 (291)
Q Consensus       181 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----------~  244 (291)
                      +     .+.+..+..             ......+. ++|+   |++.++++..+..|.|+|+.+...           .
T Consensus       305 t~~~~~~~v~~yIPV-------------GKsPHGV~-vSPD---GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v  367 (635)
T PRK02888        305 KAANAGSALTRYVPV-------------PKNPHGVN-TSPD---GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV  367 (635)
T ss_pred             ccccCCcceEEEEEC-------------CCCccceE-ECCC---CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence            8     445555552             22345555 9998   665667777799999999987322           1


Q ss_pred             eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      +.+..--.+ ....+|+++|+...|--.|..|..|++..
T Consensus       368 vaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        368 VAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence            333333233 35678999999888899999999999986

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.35  E-value=0.00026  Score=58.18  Aligned_cols=158  Identities=13%  Similarity=0.153  Sum_probs=90.7

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceE-----EEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCc
Q 022870           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV-----SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS  103 (291)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  103 (291)
                      .+..++.++.+|.+.-+|.++|+.+...+.........     .+.-.|..++..++.++.+|.+..+|.++++..++. 
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~-  146 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT-  146 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc-
Confidence            45578888889999999999999887765432100000     001111113467888889999999999999876621 


Q ss_pred             cccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcc
Q 022870          104 LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE  183 (291)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~  183 (291)
                       ......  ..      .+                                ..  .+..+++  +..++.+.-+|.++++
T Consensus       147 -~~~~~~--~s------sP--------------------------------~v--~~~~v~v--~~~~g~l~ald~~tG~  181 (394)
T PRK11138        147 -KVAGEA--LS------RP--------------------------------VV--SDGLVLV--HTSNGMLQALNESDGA  181 (394)
T ss_pred             -cCCCce--ec------CC--------------------------------EE--ECCEEEE--ECCCCEEEEEEccCCC
Confidence             111100  00      00                                01  1234443  4447899999999999


Q ss_pred             eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870          184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (291)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (291)
                      .+..+....      ......+.      -+|.-.++  .++.++.+|.+..+|..+ ++.+..
T Consensus       182 ~~W~~~~~~------~~~~~~~~------~sP~v~~~--~v~~~~~~g~v~a~d~~~-G~~~W~  230 (394)
T PRK11138        182 VKWTVNLDV------PSLTLRGE------SAPATAFG--GAIVGGDNGRVSAVLMEQ-GQLIWQ  230 (394)
T ss_pred             EeeeecCCC------CcccccCC------CCCEEECC--EEEEEcCCCEEEEEEccC-Chhhhe
Confidence            887776310      00000000      11110012  466677888999888887 555443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.34  E-value=0.00011  Score=47.11  Aligned_cols=67  Identities=21%  Similarity=0.330  Sum_probs=52.5

Q ss_pred             eeEEEEcC---CC-CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870           21 VTDVCFHQ---TK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        21 v~~l~~~~---~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~   95 (291)
                      |++|++..   +| +.|+.|+.|..||+|+  ..+.+.++...   +.|+++.-..  . .+++.+-.+|+|-+|+-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~---~~v~~L~~~~--~-~~F~Y~l~NGTVGvY~~~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITET---DKVTSLCSLG--G-GRFAYALANGTVGVYDRSQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecc---cceEEEEEcC--C-CEEEEEecCCEEEEEeCcc
Confidence            67777765   32 5899999999999998  34677776655   4488988887  5 7899999999999998643

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.25  E-value=0.00038  Score=62.79  Aligned_cols=235  Identities=13%  Similarity=0.143  Sum_probs=118.6

Q ss_pred             eEEEEcCCCCEEEEecC---CCeEEEEeCCCCeEEEEEeee--cCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           22 TDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVH--SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      .+++|-|.|+++|+...   ...|.+|. ++|-....|...  .....|..+.|++  ++..|+..-.|. |.+|-..+-
T Consensus       260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~--ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  260 GALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNS--DSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             CCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECC--CCCEEEEEecCC-ceEEEeeCC
Confidence            46799999999998754   45677887 456655555543  2225699999999  989998877665 999988765


Q ss_pred             CCCCCCccccccc-eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEE
Q 022870           97 GLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE  175 (291)
Q Consensus        97 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  175 (291)
                      ....+..+..... ......+.+...........++....+++.-.-...        -..+|++...+++.-  ...++
T Consensus       336 HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s--------~~~~~~D~g~vaVID--G~~ll  405 (928)
T PF04762_consen  336 HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS--------PGSSPNDNGTVAVID--GNKLL  405 (928)
T ss_pred             EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec--------CCCCccCceEEEEEe--CCeEE
Confidence            4322111111111 001122222111111111111111111110000000        001122222222221  12455


Q ss_pred             EEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC-----c--eeec
Q 022870          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----P--LTAM  248 (291)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----~--~~~~  248 (291)
                      +-.++.....--+.        .+.-.....+..++ |+++..    .+++-..||.|.+|.......     +  ...+
T Consensus       406 lTpf~~a~VPPPMs--------~~~l~~~~~v~~va-f~~~~~----~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~  472 (928)
T PF04762_consen  406 LTPFRRAVVPPPMS--------SYELELPSPVNDVA-FSPSNS----RFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSI  472 (928)
T ss_pred             EecccccCCCchHh--------ceEEcCCCCcEEEE-EeCCCC----eEEEEECCCCEEEEEecCCCcccccCcchhhhc
Confidence            55554332111111        12222345677787 998843    588889999999998543111     1  1111


Q ss_pred             c----------ccccceeEEEeecCCCeeEEecCC---CeEEEEEcCC
Q 022870          249 K----------VHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDH  283 (291)
Q Consensus       249 ~----------~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vw~~~~  283 (291)
                      .          .-...+..++|..+..+++..+.+   ..+.++++..
T Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  520 (928)
T PF04762_consen  473 SLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD  520 (928)
T ss_pred             ccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence            1          123457888886666655555443   6788888743

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.24  E-value=0.0013  Score=51.41  Aligned_cols=219  Identities=11%  Similarity=0.107  Sum_probs=118.3

Q ss_pred             eEEEEcCCCCEEEEe--cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC
Q 022870           22 TDVCFHQTKPILFAG--TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~   99 (291)
                      ..++++.||++++..  +--..|.|-|+..++.+.++....    +..+--++  + +.|.+.+.||++.-..+......
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~--~-~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG--N-RGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE--T-TEEEEEETTSCEEEEEETSTSSE
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC--C-CceEEEecCCceEEEEECCCCCE
Confidence            346788888877664  445679999999999888776543    44444344  3 56889999999999999854321


Q ss_pred             CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeC
Q 022870          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL  179 (291)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~  179 (291)
                      .         ......|.....+....                           -++...+..++..+  .+|.|+--|+
T Consensus       171 ~---------~~~t~~F~~~~dp~f~~---------------------------~~~~~~~~~~~F~S--y~G~v~~~dl  212 (342)
T PF06433_consen  171 A---------QKSTKVFDPDDDPLFEH---------------------------PAYSRDGGRLYFVS--YEGNVYSADL  212 (342)
T ss_dssp             E---------EEEEEESSTTTS-B-S-----------------------------EEETTTTEEEEEB--TTSEEEEEEE
T ss_pred             e---------EeeccccCCCCcccccc---------------------------cceECCCCeEEEEe--cCCEEEEEec
Confidence            1         11111222221111000                           11222333444322  3688888888


Q ss_pred             CCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe-ec-----CCC--cEEEEEccCCCCceeecccc
Q 022870          180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GY-----EDG--SILVWDIRNPGIPLTAMKVH  251 (291)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~-----~dg--~i~vwd~~~~~~~~~~~~~h  251 (291)
                      ........-..........-.....+- +.+.++++.  .++.|++. .+     .|+  .|.++|+.+ ++.+..+.. 
T Consensus       213 sg~~~~~~~~~~~~t~~e~~~~WrPGG-~Q~~A~~~~--~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-  287 (342)
T PF06433_consen  213 SGDSAKFGKPWSLLTDAEKADGWRPGG-WQLIAYHAA--SGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-  287 (342)
T ss_dssp             TTSSEEEEEEEESS-HHHHHTTEEE-S-SS-EEEETT--TTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-
T ss_pred             cCCcccccCcccccCccccccCcCCcc-eeeeeeccc--cCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-
Confidence            765432211110000000000000011 111136554  24423322 11     122  588888888 888888875 


Q ss_pred             ccceeEEEeecCCC-eeEEe-cCCCeEEEEEcCCCceeeee
Q 022870          252 LEPVLCLSIDESCN-GGISG-GADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       252 ~~~v~~~~~~~~~~-~l~s~-s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ..++.+|+.+.+.+ +|++. ..++.+.+||..++++++++
T Consensus       288 ~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  288 EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            45788999976655 55444 46899999999999999875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.22  E-value=0.00053  Score=50.81  Aligned_cols=66  Identities=12%  Similarity=0.044  Sum_probs=51.5

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEE-EeecCCCCeEEEEeCCCeEEEEECCCCCCCC
Q 022870           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA-TGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (291)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  100 (291)
                      |++++.|+..|.+.+-+.++|+....+.....   |.+-+ ..+  ++..+..|+.|++.+..|.++..++.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~---vk~~a~~d~--~~glIycgshd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET---VKVRAQCDF--DGGLIYCGSHDGNFYALDPKTYGCVY  129 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhh---hccceEEcC--CCceEEEecCCCcEEEecccccceEE
Confidence            55788899999999999999988777765432   43332 344  77899999999999999999876644

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.18  E-value=0.0013  Score=53.50  Aligned_cols=223  Identities=11%  Similarity=0.099  Sum_probs=110.1

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEE-------------------------EE----------------ee
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS-------------------------SS----------------WV   58 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-------------------------~~----------------~~   58 (291)
                      .|+.+.|.++...|+.|...|.|.||.....+...                         .+                -.
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999988899999999999998754321110                         00                01


Q ss_pred             ecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccc------ccceEEEEEeecccCccceeccCCCC
Q 022870           59 HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI------KTNSYHFCKLSLVKEPYANAKQANEP  132 (291)
Q Consensus        59 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (291)
                      +....+|++++.+.   =.+++.|.++|.+.|.|++....+.+....-      .........|.+              
T Consensus        83 ~~~~g~vtal~~S~---iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v--------------  145 (395)
T PF08596_consen   83 DAKQGPVTALKNSD---IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV--------------  145 (395)
T ss_dssp             ---S-SEEEEEE-B---TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE--------------
T ss_pred             eccCCcEeEEecCC---CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE--------------
Confidence            11225699999875   3799999999999999998776543111111      000000111111              


Q ss_pred             ceeeecccCccccccCCCCCCcccCCCC-CcEEEEecCCcCeEEEEeCC-C--cceeeEecccccCCCCCCCCCcceeee
Q 022870          133 KDCYEREVGETVDTDSLCDSKDDVPAEG-PKYMAVAGEQLSEVEIWDLN-T--AERCTRLHQNSCGGSPNFSSKGRGMCM  208 (291)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~~wd~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (291)
                                           +.+.-|+ ..+.+.+|...|.+.+|.+. .  +.....+..        ......+.+.
T Consensus       146 ---------------------m~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~--------~~~~~~~~i~  196 (395)
T PF08596_consen  146 ---------------------MTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAG--------ATTNHDSPIL  196 (395)
T ss_dssp             ---------------------EE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEE--------EE--SS----
T ss_pred             ---------------------EecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEee--------ccccCCCceE
Confidence                                 1111222 12333356667999999764 1  111112211        0001123344


Q ss_pred             eEEEecCCCC--------------CCc--eEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEe-----ecCCCee
Q 022870          209 AVQAYLPSKS--------------QGF--VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-----DESCNGG  267 (291)
Q Consensus       209 ~~~~~~p~~~--------------~g~--~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-----~~~~~~l  267 (291)
                      .+..|+.+..              .|.  .-++....+..++++..-+ .+.........-....+.+     ...+..|
T Consensus       197 ~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~L  275 (395)
T PF08596_consen  197 SIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLCSSASVVPTISRNGGYCL  275 (395)
T ss_dssp             EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEEEEEEEEEEE-EEEEEEE
T ss_pred             EEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC-CcccceeeccccccceEEEEeecccCCceEE
Confidence            4333432200              000  0233334467899999887 5544433322223334444     3466788


Q ss_pred             EEecCCCeEEEEEcCCCceeee
Q 022870          268 ISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       268 ~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      ++-..+|.|+++.+..=+.+..
T Consensus       276 v~l~~~G~i~i~SLP~Lkei~~  297 (395)
T PF08596_consen  276 VCLFNNGSIRIYSLPSLKEIKS  297 (395)
T ss_dssp             EEEETTSEEEEEETTT--EEEE
T ss_pred             EEEECCCcEEEEECCCchHhhc
Confidence            8999999999999988666543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=1.2e-05  Score=62.59  Aligned_cols=89  Identities=18%  Similarity=0.243  Sum_probs=69.0

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                      ++|+|..+-++. .++.+..|+|.|+++...+..+.        .     ...+++++ |.-+   ..++|.+|-.+|.|
T Consensus       199 lafSp~~~GLl~-~asl~nkiki~dlet~~~vssy~--------a-----~~~~wSC~-wDld---e~h~IYaGl~nG~V  260 (463)
T KOG1645|consen  199 LAFSPFNEGLLG-LASLGNKIKIMDLETSCVVSSYI--------A-----YNQIWSCC-WDLD---ERHVIYAGLQNGMV  260 (463)
T ss_pred             hccCccccceee-eeccCceEEEEecccceeeehee--------c-----cCCceeee-eccC---CcceeEEeccCceE
Confidence            889999876655 57778999999999998888777        2     34677776 8877   34499999999999


Q ss_pred             EEEEccCCCCceeecccc--ccceeEEEe
Q 022870          234 LVWDIRNPGIPLTAMKVH--LEPVLCLSI  260 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h--~~~v~~~~~  260 (291)
                      .|||++.+..++..+.+.  ..+|..++.
T Consensus       261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~  289 (463)
T KOG1645|consen  261 LVYDMRQPEGPLMELVANVTINPVHKIAP  289 (463)
T ss_pred             EEEEccCCCchHhhhhhhhccCcceeecc
Confidence            999999877777777652  345655554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.16  E-value=0.00032  Score=57.57  Aligned_cols=114  Identities=12%  Similarity=0.079  Sum_probs=66.1

Q ss_pred             cccCCCCCcEEEEecCCcCe--EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC
Q 022870          154 DDVPAEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (291)
                      .+|+|||+.+++ +...||.  |.++|+..++..+ +..        -    .+....- .|+|+   |+.++++.+..|
T Consensus       243 P~fspDG~~l~f-~~~rdg~~~iy~~dl~~~~~~~-Lt~--------~----~gi~~~P-s~spd---G~~ivf~Sdr~G  304 (425)
T COG0823         243 PAFSPDGSKLAF-SSSRDGSPDIYLMDLDGKNLPR-LTN--------G----FGINTSP-SWSPD---GSKIVFTSDRGG  304 (425)
T ss_pred             ccCCCCCCEEEE-EECCCCCccEEEEcCCCCccee-ccc--------C----CccccCc-cCCCC---CCEEEEEeCCCC
Confidence            569999988776 4555666  6666777766333 432        1    1111122 39998   554666666677


Q ss_pred             cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecC-CCe--EEEEEcCCCc
Q 022870          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQK--IVLYNLDHST  285 (291)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~--i~vw~~~~~~  285 (291)
                      .-.||-+.-.+.-...+......=..-.|+|+|++++..+. +|.  |.+.|+.++.
T Consensus       305 ~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         305 RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            65555443323433444433332236678999999987664 344  6666665544

>smart00320 WD40 WD40 repeats

Probab=98.14  E-value=6e-06  Score=42.39  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=34.1

Q ss_pred             CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      .++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778889999999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.12  E-value=0.003  Score=51.41  Aligned_cols=237  Identities=13%  Similarity=0.186  Sum_probs=111.1

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeec------CCcceEEEEEeec---CCC---C
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS------AAHGIVSVATGPS---IGL---N   77 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~---~   77 (291)
                      |..-++...++|++++.|.-| ++|.|..+|.+.|.|++....+..-....      ....|+++.|.-.   .|+   -
T Consensus        78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            455566678999999999777 99999999999999998777776532221      2245888888631   122   3


Q ss_pred             eEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEee-cccCccceeccCCCCceeeecccCccccccCCCCCCccc
Q 022870           78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS-LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV  156 (291)
Q Consensus        78 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (291)
                      .|++|...|.+.+|.+.-...-   .+.     ....... ....+...       ...++.+...........-+.+.-
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g---~f~-----v~~~~~~~~~~~~i~~-------I~~i~~~~G~~a~At~~~~~~l~~  221 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNG---RFS-----VQFAGATTNHDSPILS-------IIPINADTGESALATISAMQGLSK  221 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG----EE-----EEEEEEE--SS----E-------EEEEETTT--B-B-BHHHHHGGGG
T ss_pred             EEEEEeCCCCEEEEEEecCCCC---ceE-----EEEeeccccCCCceEE-------EEEEECCCCCcccCchhHhhcccc
Confidence            6788999999999988521100   001     0110000 00000000       000000000000000000000000


Q ss_pred             CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC--CCCCceEEEeecCCCcEE
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS--KSQGFVNVLAGYEDGSIL  234 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~l~~g~~dg~i~  234 (291)
                      -..-+.++++++  +..++++...+.+...+...            ....+..+. +-+.  ...+. .|++-..+|.|+
T Consensus       222 g~~i~g~vVvvS--e~~irv~~~~~~k~~~K~~~------------~~~~~~~~~-vv~~~~~~~~~-~Lv~l~~~G~i~  285 (395)
T PF08596_consen  222 GISIPGYVVVVS--ESDIRVFKPPKSKGAHKSFD------------DPFLCSSAS-VVPTISRNGGY-CLVCLFNNGSIR  285 (395)
T ss_dssp             T----EEEEEE---SSEEEEE-TT---EEEEE-S------------S-EEEEEEE-EEEEE-EEEEE-EEEEEETTSEEE
T ss_pred             CCCcCcEEEEEc--ccceEEEeCCCCcccceeec------------cccccceEE-EEeecccCCce-EEEEEECCCcEE
Confidence            011123444344  47899999988776554432            112222222 4221  01122 788889999999


Q ss_pred             EEEccCCCCceeecccc----ccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          235 VWDIRNPGIPLTAMKVH----LEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       235 vwd~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      +|.+-. -+.+..++..    ...+....++++|..++-.|. ..+.++.
T Consensus       286 i~SLP~-Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~s  333 (395)
T PF08596_consen  286 IYSLPS-LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFS  333 (395)
T ss_dssp             EEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEE
T ss_pred             EEECCC-chHhhcccCCCccccccccccEECCCCCEEEEeCc-ccEEEEE
Confidence            999987 5666555542    234556677888886655543 3444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.12  E-value=7.6e-07  Score=73.07  Aligned_cols=168  Identities=20%  Similarity=0.246  Sum_probs=102.9

Q ss_pred             EecCCccceeEEEEcC-CCCEEEEec----CCCeEEEEeCCCC--eEE--EEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           13 VLRGHRASVTDVCFHQ-TKPILFAGT----TGGELRIWDTVQH--RTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~-~~~~l~s~~----~dg~v~iwd~~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      ...+|....++++|++ |.+.||.|-    .|..+.|||+.++  .+.  ..+... ......+++|..  +..++++|.
T Consensus        97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~-~l~gqns~cwlr--d~klvlaGm  173 (783)
T KOG1008|consen   97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS-TLDGQNSVCWLR--DTKLVLAGM  173 (783)
T ss_pred             ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc-cccCcccccccc--Ccchhhccc
Confidence            3456788899999999 667777773    3667999999876  222  222221 113466888887  878888999


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                      ....+.++|++......   ..+.......                                        +...|-....
T Consensus       174 ~sr~~~ifdlRqs~~~~---~svnTk~vqG----------------------------------------~tVdp~~~nY  210 (783)
T KOG1008|consen  174 TSRSVHIFDLRQSLDSV---SSVNTKYVQG----------------------------------------ITVDPFSPNY  210 (783)
T ss_pred             ccchhhhhhhhhhhhhh---hhhhhhhccc----------------------------------------ceecCCCCCc
Confidence            99999999998432211   1111111111                                        3355544445


Q ss_pred             EEEecCCcCeEEEEe-CCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee-cCCCcEEEEEccC
Q 022870          164 MAVAGEQLSEVEIWD-LNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRN  240 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~  240 (291)
                      +  +...||.|.+|| .+.-+ ++..+..        ...........++ |.|..+ |.  +++. -+.++|+.+|+..
T Consensus       211 ~--cs~~dg~iAiwD~~rnienpl~~i~~--------~~N~~~~~l~~~a-ycPtrt-gl--la~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  211 F--CSNSDGDIAIWDTYRNIENPLQIILR--------NENKKPKQLFALA-YCPTRT-GL--LAVLSRDSITIRLYDICV  276 (783)
T ss_pred             e--eccccCceeeccchhhhccHHHHHhh--------CCCCcccceeeEE-eccCCc-ch--hhhhccCcceEEEecccc
Confidence            5  445589999999 33322 3333321        1111223567776 999864 64  5544 4568999999864

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.06  E-value=0.00054  Score=56.24  Aligned_cols=187  Identities=16%  Similarity=0.119  Sum_probs=100.4

Q ss_pred             ecCCccceeEEEEcCCCCEEEEe---cCC-CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCe-
Q 022870           14 LRGHRASVTDVCFHQTKPILFAG---TTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT-   87 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~s~---~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~-   87 (291)
                      +..-...+..-+|+|++..++--   ... ..+.++|+++++....+...   ..-..-+|+|  ||++|+ +...||. 
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fsp--DG~~l~f~~~rdg~~  262 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSP--DGSKLAFSSSRDGSP  262 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCC--CCCEEEEEECCCCCc
Confidence            33334556677889988765433   222 46899999988765555422   2245678999  988776 5666776 


Q ss_pred             -EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870           88 -VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (291)
Q Consensus        88 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (291)
                       |.++|+......+     +........  .                                    -.|+|+|+.++++
T Consensus       263 ~iy~~dl~~~~~~~-----Lt~~~gi~~--~------------------------------------Ps~spdG~~ivf~  299 (425)
T COG0823         263 DIYLMDLDGKNLPR-----LTNGFGINT--S------------------------------------PSWSPDGSKIVFT  299 (425)
T ss_pred             cEEEEcCCCCccee-----cccCCcccc--C------------------------------------ccCCCCCCEEEEE
Confidence             4555666554211     111111000  0                                    3499999988775


Q ss_pred             ecCCcCe--EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc--EEEEEccCCC
Q 022870          167 AGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVWDIRNPG  242 (291)
Q Consensus       167 ~g~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~--i~vwd~~~~~  242 (291)
                       .+..|.  |.++|.+.+.. ..+...      +-   ...   .- .++|+   |..+++....+|.  |.+.|+.+..
T Consensus       300 -Sdr~G~p~I~~~~~~g~~~-~riT~~------~~---~~~---~p-~~Spd---G~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         300 -SDRGGRPQIYLYDLEGSQV-TRLTFS------GG---GNS---NP-VWSPD---GDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             -eCCCCCcceEEECCCCCce-eEeecc------CC---CCc---Cc-cCCCC---CCEEEEEeccCCceeeEEeccCCCC
Confidence             444565  55566665544 333310      10   111   22 38998   5534445544555  7777776633


Q ss_pred             CceeeccccccceeEEEeecCCCeeE
Q 022870          243 IPLTAMKVHLEPVLCLSIDESCNGGI  268 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~  268 (291)
                      . +..+.. ......-.|.+++..+.
T Consensus       362 ~-~~~lt~-~~~~e~ps~~~ng~~i~  385 (425)
T COG0823         362 K-IRILTS-TYLNESPSWAPNGRMIM  385 (425)
T ss_pred             c-EEEccc-cccCCCCCcCCCCceEE
Confidence            2 333331 22223334455555443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=98.05  E-value=7.4e-06  Score=59.06  Aligned_cols=101  Identities=16%  Similarity=0.082  Sum_probs=66.0

Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +|..+|.|.+|.....-......              ....-.+.+--|...++. +.++++.||.||.|++.- .+.+.
T Consensus        75 vG~~dg~v~~~n~n~~g~~~d~~--------------~s~~e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p-~k~~g  138 (238)
T KOG2444|consen   75 VGTSDGAVYVFNWNLEGAHSDRV--------------CSGEESIDLGIPNGRDSS-LGCVGAQDGRIRACNIKP-NKVLG  138 (238)
T ss_pred             eecccceEEEecCCccchHHHhh--------------hcccccceeccccccccc-eeEEeccCCceeeecccc-Cceee
Confidence            57779999999887221111110              000011111334333333 889999999999999986 67666


Q ss_pred             eccccc-cceeEEEeecCCCeeEEe--cCCCeEEEEEcCC
Q 022870          247 AMKVHL-EPVLCLSIDESCNGGISG--GADQKIVLYNLDH  283 (291)
Q Consensus       247 ~~~~h~-~~v~~~~~~~~~~~l~s~--s~dg~i~vw~~~~  283 (291)
                      ....|. .++..+.....+.+++..  |.|..++.|++..
T Consensus       139 ~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  139 YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            666777 667777777777778877  8888888888764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.04  E-value=0.00018  Score=61.74  Aligned_cols=71  Identities=18%  Similarity=0.253  Sum_probs=61.1

Q ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~   95 (291)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+.......|.  .+|..+.|++  +|+.++++..-|.|.+|....
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~--a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP--APIQGLDWSH--DGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC--CCceeEEecC--CCCeEEEcCCCceeEEEEeee
Confidence            5679999988788999999999999987766655556676  5599999999  999999999999999998763

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.00  E-value=0.004  Score=51.51  Aligned_cols=172  Identities=15%  Similarity=0.104  Sum_probs=88.2

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      .+.+-...-....+.++|+|++++. +.||.-.|+.....+....  +.     -....|.+  . +.+++-..+++|.+
T Consensus        25 ~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~--G~-----g~~~vw~~--~-n~yAv~~~~~~I~I   93 (443)
T PF04053_consen   25 VKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF--GS-----GLSFVWSS--R-NRYAVLESSSTIKI   93 (443)
T ss_dssp             -EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE--EE------SEEEE-T--S-SEEEEE-TTS-EEE
T ss_pred             eccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc--Cc-----eeEEEEec--C-ccEEEEECCCeEEE
Confidence            4445445566899999999998888 4578888888544443321  22     45677887  5 56777777889999


Q ss_pred             EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC
Q 022870           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (291)
                      +.--+.+...  .+.... .....                                         |.  |. ++++.++ 
T Consensus        94 ~kn~~~~~~k--~i~~~~-~~~~I-----------------------------------------f~--G~-LL~~~~~-  125 (443)
T PF04053_consen   94 YKNFKNEVVK--SIKLPF-SVEKI-----------------------------------------FG--GN-LLGVKSS-  125 (443)
T ss_dssp             EETTEE-TT-------SS--EEEE-----------------------------------------E---SS-SEEEEET-
T ss_pred             EEcCccccce--EEcCCc-ccceE-----------------------------------------Ec--Cc-EEEEECC-
Confidence            6322222211  111111 01111                                         22  44 4444443 


Q ss_pred             cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC--------
Q 022870          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG--------  242 (291)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~--------  242 (291)
                       +.|.+||+.+++.+..+..             . .+..+. |+++   |. +++..+.+ .+++++... .        
T Consensus       126 -~~i~~yDw~~~~~i~~i~v-------------~-~vk~V~-Ws~~---g~-~val~t~~-~i~il~~~~-~~~~~~~~~  183 (443)
T PF04053_consen  126 -DFICFYDWETGKLIRRIDV-------------S-AVKYVI-WSDD---GE-LVALVTKD-SIYILKYNL-EAVAAIPEE  183 (443)
T ss_dssp             -TEEEEE-TTT--EEEEESS---------------E-EEEE-E-TT---SS-EEEEE-S--SEEEEEE-H-HHHHHBTTT
T ss_pred             -CCEEEEEhhHcceeeEEec-------------C-CCcEEE-EECC---CC-EEEEEeCC-eEEEEEecc-hhccccccc
Confidence             5899999999999998872             2 255665 9988   44 67666644 677777553 1        


Q ss_pred             ---CceeeccccccceeEEEeecC
Q 022870          243 ---IPLTAMKVHLEPVLCLSIDES  263 (291)
Q Consensus       243 ---~~~~~~~~h~~~v~~~~~~~~  263 (291)
                         .....+..-...|.+.+|..+
T Consensus       184 g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  184 GVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             B-GGGEEEEEEE-S--SEEEEETT
T ss_pred             CchhceEEEEEecceeEEEEEEcC
Confidence               022233222467888888776

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=3.9e-05  Score=63.26  Aligned_cols=78  Identities=18%  Similarity=0.238  Sum_probs=68.7

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceE-EEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV-SVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      .-.|.-+.|+|.-.++|++..+|.|.+..++ .+.+.++..+...  ++ +++|.|  ||+.|+.|-.||+|++.|++++
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~--v~~sL~W~~--DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN--VTASLCWRP--DGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCc--cceeeeecC--CCCEEEEEecCCeEEEEEccCC
Confidence            4567889999999999999999999999987 7788888877643  77 999999  9999999999999999999998


Q ss_pred             CCCC
Q 022870           97 GLSS  100 (291)
Q Consensus        97 ~~~~  100 (291)
                      ..+.
T Consensus        95 ~~l~   98 (665)
T KOG4640|consen   95 GRLV   98 (665)
T ss_pred             Ccee
Confidence            7654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.99  E-value=0.00012  Score=55.35  Aligned_cols=119  Identities=8%  Similarity=0.165  Sum_probs=74.7

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCC-CcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (291)
                      +.|+.|.+.++  ++. |=.|.+|++.-......+-.-.     .|.. .....+++.. |+|...  . .+.-.+..|.
T Consensus       178 iS~NsD~et~l--SaD-dLrINLWnl~i~D~sFnIVDiK-----P~nmeeLteVItSae-Fhp~~c--n-~fmYSsSkG~  245 (460)
T COG5170         178 ISFNSDKETLL--SAD-DLRINLWNLEIIDGSFNIVDIK-----PHNMEELTEVITSAE-FHPEMC--N-VFMYSSSKGE  245 (460)
T ss_pred             eeecCchheee--ecc-ceeeeeccccccCCceEEEecc-----CccHHHHHHHHhhcc-cCHhHc--c-eEEEecCCCc
Confidence            67777776665  444 7889999987543322221100     1211 1233455565 999743  2 6777788999


Q ss_pred             EEEEEccCCC-----Cceeec----------cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          233 ILVWDIRNPG-----IPLTAM----------KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       233 i~vwd~~~~~-----~~~~~~----------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      |++-|+++..     ..+..+          .+-...|..+.|+++|+++++-+. -++++||++..+
T Consensus       246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k  312 (460)
T COG5170         246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK  312 (460)
T ss_pred             EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence            9999999421     111111          112346788899999999888764 489999998643

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=6.5e-05  Score=62.01  Aligned_cols=76  Identities=16%  Similarity=0.121  Sum_probs=65.1

Q ss_pred             eeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccccee-EEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL-CLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      +.-+. |+|...    .+|.+..+|.|-+.-+.  -+.+.++.-|...++ +++|.|||+.||.|=.||+|++-|++++.
T Consensus        23 i~~~e-wnP~~d----LiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   23 IKRIE-WNPKMD----LIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             eEEEE-EcCccc----hhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            33444 999744    89999999999999887  677888887777777 99999999999999999999999999998


Q ss_pred             eeee
Q 022870          286 VSHC  289 (291)
Q Consensus       286 ~~~~  289 (291)
                      .++.
T Consensus        96 ~l~~   99 (665)
T KOG4640|consen   96 RLVS   99 (665)
T ss_pred             ceec
Confidence            7765

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.87  E-value=0.0075  Score=47.28  Aligned_cols=184  Identities=13%  Similarity=0.101  Sum_probs=112.2

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe----------CCCeEEEEECCCCCCCCCCccccccc
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWDIENGGLSSNPSLTIKTN  109 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~  109 (291)
                      +.+.+.|.++++.+..+....    .-.+..+|  +++.+++++          ..-.|.+||..+.....+  ..++..
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~----~~~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E--I~iP~k   88 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGF----LGNVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE--IEIPPK   88 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEES----SEEEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE--EEETTS
T ss_pred             ceEEEEECCCCcEEEEeeccc----CCceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccce--EecCCc
Confidence            479999999999988887654    34566789  888888654          234699999998754331  111111


Q ss_pred             eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEe
Q 022870          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (291)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~  188 (291)
                      +.....                                  .+.. .+++.+++.+++.--+-..+|.|.|+..++.+..+
T Consensus        89 ~R~~~~----------------------------------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei  134 (342)
T PF06433_consen   89 PRAQVV----------------------------------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI  134 (342)
T ss_dssp             -B--BS------------------------------------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE
T ss_pred             chheec----------------------------------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee
Confidence            000000                                  0000 56888998888766665678999999999988887


Q ss_pred             cccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec----cccccce-eEEEeecC
Q 022870          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM----KVHLEPV-LCLSIDES  263 (291)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~----~~h~~~v-~~~~~~~~  263 (291)
                      ..             . -|..   ..|.++  + -+.+-|.||.+.-..+...++.....    ..-.+++ ..-++...
T Consensus       135 ~~-------------P-GC~~---iyP~~~--~-~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  135 DT-------------P-GCWL---IYPSGN--R-GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             EG-------------T-SEEE---EEEEET--T-EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             cC-------------C-CEEE---EEecCC--C-ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            73             1 2222   234422  1 57788889999999998657665321    1112222 23334444


Q ss_pred             CCeeEEecCCCeEEEEEcCCCc
Q 022870          264 CNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       264 ~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      +..++--+.+|.|+--|+....
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~  216 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDS  216 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSS
T ss_pred             CCeEEEEecCCEEEEEeccCCc
Confidence            4444446788888888877654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.0099  Score=48.58  Aligned_cols=206  Identities=14%  Similarity=0.090  Sum_probs=127.7

Q ss_pred             eEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC---CCeEEEEECCCCC
Q 022870           22 TDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGG   97 (291)
Q Consensus        22 ~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~   97 (291)
                      ..++.++.+..+ ++...++.|.+.|..+.+..........   -..++++|  ++..++.+..   ++++.+.|..+.+
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~---P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLG---PVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccC---CceEEECC--CCCEEEEEecccCCceEEEEeCCCCe
Confidence            457778877744 4455568999999887777776654432   57999999  8877776554   6788888887776


Q ss_pred             CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEE
Q 022870           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (291)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~w  177 (291)
                      ...    .......      +                                 ..++++|+|..++++. ..++.|.+.
T Consensus       152 ~~~----~~~vG~~------P---------------------------------~~~a~~p~g~~vyv~~-~~~~~v~vi  187 (381)
T COG3391         152 VTA----TIPVGNT------P---------------------------------TGVAVDPDGNKVYVTN-SDDNTVSVI  187 (381)
T ss_pred             EEE----EEecCCC------c---------------------------------ceEEECCCCCeEEEEe-cCCCeEEEE
Confidence            533    1111100      0                                 0066999998777644 558999999


Q ss_pred             eCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC--CcEEEEEccCCCCceee-ccccccc
Q 022870          178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--GSILVWDIRNPGIPLTA-MKVHLEP  254 (291)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d--g~i~vwd~~~~~~~~~~-~~~h~~~  254 (291)
                      |........ -..       .-..........+. +.|+   |....++-..+  +.+...|..+ +..... ...-...
T Consensus       188 ~~~~~~v~~-~~~-------~~~~~~~~~P~~i~-v~~~---g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~  254 (381)
T COG3391         188 DTSGNSVVR-GSV-------GSLVGVGTGPAGIA-VDPD---GNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGA  254 (381)
T ss_pred             eCCCcceec-ccc-------ccccccCCCCceEE-ECCC---CCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCC
Confidence            977665543 110       00000111223343 8888   43233333333  6899999887 444443 2221114


Q ss_pred             eeEEEeecCCCeeEEecC-CCeEEEEEcCCCceeee
Q 022870          255 VLCLSIDESCNGGISGGA-DQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       255 v~~~~~~~~~~~l~s~s~-dg~i~vw~~~~~~~~~~  289 (291)
                      ...+..+|+|..+..... .+.+.+-|..+.++...
T Consensus       255 ~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         255 PRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             CCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            667888999998877743 48899988888766543

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.86  E-value=0.0013  Score=55.70  Aligned_cols=55  Identities=9%  Similarity=0.009  Sum_probs=39.3

Q ss_pred             CCcEEEEEccC----CCCceeeccccccceeEEEeecCCCeeEEec-CCCeEEEEEcCCCc
Q 022870          230 DGSILVWDIRN----PGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHST  285 (291)
Q Consensus       230 dg~i~vwd~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~~~~~  285 (291)
                      ++.|.+.|.++    ....+..+. -......+.++|||++++.++ .++++.|.|+++.+
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            35688888775    223333333 245678999999999986555 58999999998855

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.86  E-value=5.2e-05  Score=64.90  Aligned_cols=110  Identities=15%  Similarity=0.159  Sum_probs=81.5

Q ss_pred             cccCCCCCcEEEEe--cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC
Q 022870          154 DDVPAEGPKYMAVA--GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (291)
Q Consensus       154 ~~~~~~~~~~~~~~--g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (291)
                      .+|+|..+.+.+++  -...|+|.|| ..+|++-.....             .....+++ |+|..-    .|+.|-+-|
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~-------------P~hatSLC-WHpe~~----vLa~gwe~g   81 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTY-------------PVHATSLC-WHPEEF----VLAQGWEMG   81 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccccc-------------ceehhhhc-cChHHH----HHhhccccc
Confidence            56899987655432  2345788888 455664433331             12234465 999732    788899999


Q ss_pred             cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      .+.+|...+ .+.......|..+|..+.|+++|..|+++..-|.+.+|....
T Consensus        82 ~~~v~~~~~-~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   82 VSDVQKTNT-TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eeEEEecCC-ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            999999886 555555667999999999999999999999999999998873

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.85  E-value=0.0056  Score=48.84  Aligned_cols=184  Identities=10%  Similarity=0.098  Sum_probs=104.3

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCC-----CCeEEEEeC----------CCeEEEEECCCCCCCCCCcc
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-----LNKVISQGR----------DGTVKCWDIENGGLSSNPSL  104 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~  104 (291)
                      ..|++.|..+.+.+.++..... +.+.+++.....+     ..+|+.|..          .|.|.++++.........+.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            4689999888888887776654 4566665543212     356666543          28899999987410000000


Q ss_pred             ccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcc-
Q 022870          105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-  183 (291)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~-  183 (291)
                      .+.........                                      .++.+-+.+++++.|   +.|.+|++...+ 
T Consensus        81 ~i~~~~~~g~V--------------------------------------~ai~~~~~~lv~~~g---~~l~v~~l~~~~~  119 (321)
T PF03178_consen   81 LIHSTEVKGPV--------------------------------------TAICSFNGRLVVAVG---NKLYVYDLDNSKT  119 (321)
T ss_dssp             EEEEEEESS-E--------------------------------------EEEEEETTEEEEEET---TEEEEEEEETTSS
T ss_pred             EEEEEeecCcc--------------------------------------eEhhhhCCEEEEeec---CEEEEEEccCccc
Confidence            11100000000                                      112233455665443   689999998877 


Q ss_pred             eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc--cccceeEEEee
Q 022870          184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV--HLEPVLCLSID  261 (291)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~~  261 (291)
                      ....-..        +   ....+.++. ...+      ++++|.....+.++..+.....+..+..  ....++++.+-
T Consensus       120 l~~~~~~--------~---~~~~i~sl~-~~~~------~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l  181 (321)
T PF03178_consen  120 LLKKAFY--------D---SPFYITSLS-VFKN------YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL  181 (321)
T ss_dssp             EEEEEEE------------BSSSEEEEE-EETT------EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE
T ss_pred             chhhhee--------c---ceEEEEEEe-cccc------EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe
Confidence            3332221        1   122556665 3322      8999998888888866542332333322  24568888886


Q ss_pred             cCCCeeEEecCCCeEEEEEcCC
Q 022870          262 ESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       262 ~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      +++..++.+..+|.+.++..+.
T Consensus       182 ~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  182 VDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             -SSSEEEEEETTSEEEEEEE-S
T ss_pred             cCCcEEEEEcCCCeEEEEEECC
Confidence            5556899999999999998874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.84  E-value=0.0019  Score=41.59  Aligned_cols=107  Identities=13%  Similarity=0.164  Sum_probs=62.5

Q ss_pred             eEEEEEeecCC--CCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc
Q 022870           65 IVSVATGPSIG--LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE  142 (291)
Q Consensus        65 v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (291)
                      |.++++.....  .+.|++|+.|..|++|+-+.-      +..+........                            
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~------~~Ei~e~~~v~~----------------------------   47 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI------VAEITETDKVTS----------------------------   47 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE------EEEEecccceEE----------------------------
Confidence            67777766422  268999999999999986642      112222111111                            


Q ss_pred             cccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCce
Q 022870          143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (291)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~  222 (291)
                                 ++-... .. ++ -+-.+|+|-+|+-.  +.+...+.             ...++++..|..++ +|..
T Consensus        48 -----------L~~~~~-~~-F~-Y~l~NGTVGvY~~~--~RlWRiKS-------------K~~~~~~~~~D~~g-dG~~   97 (111)
T PF14783_consen   48 -----------LCSLGG-GR-FA-YALANGTVGVYDRS--QRLWRIKS-------------KNQVTSMAFYDING-DGVP   97 (111)
T ss_pred             -----------EEEcCC-CE-EE-EEecCCEEEEEeCc--ceeeeecc-------------CCCeEEEEEEcCCC-CCce
Confidence                       111112 22 33 35568999999763  23344442             22355555455553 4666


Q ss_pred             EEEeecCCCcEEE
Q 022870          223 NVLAGYEDGSILV  235 (291)
Q Consensus       223 ~l~~g~~dg~i~v  235 (291)
                      .|++|-.+|.|-+
T Consensus        98 eLI~GwsnGkve~  110 (111)
T PF14783_consen   98 ELIVGWSNGKVEV  110 (111)
T ss_pred             EEEEEecCCeEEe
Confidence            8999999998754

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.80  E-value=0.00076  Score=58.95  Aligned_cols=98  Identities=11%  Similarity=0.101  Sum_probs=63.5

Q ss_pred             cCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          168 GEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      |-.+..+..||+|-.. .+..-.        .+.-.......+++ -..+   |  +||+|+.+|.||+||--. .+...
T Consensus       548 Gls~n~lfriDpR~~~~k~v~~~--------~k~Y~~~~~Fs~~a-Tt~~---G--~iavgs~~G~IRLyd~~g-~~AKT  612 (794)
T PF08553_consen  548 GLSDNSLFRIDPRLSGNKLVDSQ--------SKQYSSKNNFSCFA-TTED---G--YIAVGSNKGDIRLYDRLG-KRAKT  612 (794)
T ss_pred             EECCCceEEeccCCCCCceeecc--------ccccccCCCceEEE-ecCC---c--eEEEEeCCCcEEeecccc-hhhhh
Confidence            4447889999999643 121111        22211122222322 3333   5  799999999999999532 33334


Q ss_pred             eccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      .+.+-..+|..|..+.||++|++.+ +..+.+++.
T Consensus       613 ~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  613 ALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             cCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            4566678999999999999987776 556777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.79  E-value=0.017  Score=48.93  Aligned_cols=70  Identities=23%  Similarity=0.248  Sum_probs=44.8

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe---------CCCeEEEEECCCCCCCC
Q 022870           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG---------RDGTVKCWDIENGGLSS  100 (291)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~  100 (291)
                      ..++.++.+|.|.-+|.++|+.+..+........-..+.-+|...+..++.++         .+|.|..+|..+++...
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            57888889999999999999998877654320001112222221224555554         36788999999887765

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.75  E-value=0.019  Score=48.69  Aligned_cols=69  Identities=17%  Similarity=0.059  Sum_probs=47.0

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCC----cceEEEEEeecCCC-CeEEEEeCCCeEEEEECCCCCCCC
Q 022870           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIVSVATGPSIGL-NKVISQGRDGTVKCWDIENGGLSS  100 (291)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~  100 (291)
                      +..++.++.++.|.-.|..+++.+..++.....    ..+..-...-  .+ ..++.++.++.|.-+|.++++...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~~~~~V~v~~~~g~v~AlD~~TG~~~W  134 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--WDPRKVFFGTFDGRLVALDAETGKQVW  134 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--ccCCeEEEecCCCeEEEEECCCCCEee
Confidence            446777888999999999999888776543220    0011100011  22 688888899999999999998765

The alignment model contains an 8-bladed beta-propeller.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.71  E-value=0.02  Score=47.29  Aligned_cols=51  Identities=22%  Similarity=0.275  Sum_probs=39.8

Q ss_pred             eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      .|.||+. .|+.+.++.-..  +.|.++.|..  + ..|+....||.+++||+....
T Consensus        62 ~I~iys~-sG~ll~~i~w~~--~~iv~~~wt~--~-e~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDS--GRIVGMGWTD--D-EELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECC-CCCEeEEEEECC--CCEEEEEECC--C-CeEEEEEcCCEEEEEeCCCce
Confidence            5899985 577777766555  4599999988  5 677788899999999987443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.69  E-value=0.0071  Score=51.21  Aligned_cols=77  Identities=10%  Similarity=0.095  Sum_probs=58.1

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE---EEEeeec-CCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV---SSSWVHS-AAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      -.+.+..+..+++..++|.|+..|.|.++.++.+...   ..-..+. +...|++++|++  ++..+++|...|.|.+-.
T Consensus        75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~  152 (726)
T KOG3621|consen   75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTE  152 (726)
T ss_pred             ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEE
Confidence            4455666778888888899999999999988764321   1111111 125599999999  999999999999999988


Q ss_pred             CCC
Q 022870           93 IEN   95 (291)
Q Consensus        93 ~~~   95 (291)
                      +..
T Consensus       153 L~s  155 (726)
T KOG3621|consen  153 LDS  155 (726)
T ss_pred             ech
Confidence            877

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.68  E-value=0.002  Score=47.92  Aligned_cols=114  Identities=13%  Similarity=0.042  Sum_probs=81.3

Q ss_pred             ccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870          155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (291)
Q Consensus       155 ~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (291)
                      ...++.+.+++ .|+..+.+.--|..+++....-..       +    .+-.+.++  .-     |. +++.|+..|.++
T Consensus        17 VV~~dskT~v~-igSHs~~~~avd~~sG~~~We~il-------g----~RiE~sa~--vv-----gd-fVV~GCy~g~lY   76 (354)
T KOG4649|consen   17 VVCNDSKTLVV-IGSHSGIVIAVDPQSGNLIWEAIL-------G----VRIECSAI--VV-----GD-FVVLGCYSGGLY   76 (354)
T ss_pred             EEecCCceEEE-EecCCceEEEecCCCCcEEeehhh-------C----ceeeeeeE--EE-----CC-EEEEEEccCcEE
Confidence            34556655555 688889999999999987655432       1    11112222  21     33 899999999999


Q ss_pred             EEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          235 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       235 vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      +.+.++ +.....+..-...=.....++++..+..|+.|+..+.-|..+...+++
T Consensus        77 fl~~~t-Gs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen   77 FLCVKT-GSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             EEEecc-hhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence            999999 777776665333223345588888999999999999999999887765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.66  E-value=0.00021  Score=38.37  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=30.0

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT   52 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~   52 (291)
                      ...|.+++|+|...+||.|..||.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999998 4543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.00044  Score=58.07  Aligned_cols=112  Identities=21%  Similarity=0.221  Sum_probs=77.5

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                      .+++..++++.+  |+.-|.+++|+-..++.. .++..      +    ..+..... +.+++   .+ ++|+|+..|.|
T Consensus        39 Tc~dst~~~l~~--GsS~G~lyl~~R~~~~~~-~~~~~------~----~~~~~~~~-~vs~~---e~-lvAagt~~g~V  100 (726)
T KOG3621|consen   39 TCVDATEEYLAM--GSSAGSVYLYNRHTGEMR-KLKNE------G----ATGITCVR-SVSSV---EY-LVAAGTASGRV  100 (726)
T ss_pred             EEeecCCceEEE--ecccceEEEEecCchhhh-ccccc------C----ccceEEEE-Eecch---hH-hhhhhcCCceE
Confidence            456667776653  445699999987766543 22210      1    22333333 37776   33 88999999999


Q ss_pred             EEEEccCCCCceee----c-cccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          234 LVWDIRNPGIPLTA----M-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       234 ~vwd~~~~~~~~~~----~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      .++-+.....+-..    + +.|...|++++|++++..|.+|...|+|..-.+++
T Consensus       101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             EeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            99988762222111    1 23678999999999999999999999999988877

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.61  E-value=0.03  Score=46.52  Aligned_cols=201  Identities=14%  Similarity=0.105  Sum_probs=104.6

Q ss_pred             ceeEEEEcCCCCEEEEe-cC----CCeEEEEeCCCCeEEEEE-eeecCCcceEEEEEeecCCCCeEEEEeCCC-------
Q 022870           20 SVTDVCFHQTKPILFAG-TT----GGELRIWDTVQHRTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQGRDG-------   86 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~-~~----dg~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------   86 (291)
                      .+...+++|+|+++|-+ +.    ...+++.|+++++.+... ....    ...+.|.+  +++.|+....+.       
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~----~~~~~W~~--d~~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK----FSSVSWSD--DGKGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE----SEEEEECT--TSSEEEEEECSTTTSS-CC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc----cceEEEeC--CCCEEEEEEeCcccccccC
Confidence            34467899999988754 22    245999999999776532 2221    23499999  877666444322       


Q ss_pred             ----eEEEEECCCCCCCCCCccccccceE-EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870           87 ----TVKCWDIENGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (291)
Q Consensus        87 ----~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (291)
                          .|+.|++.+.......++....... ...                                       +..+++++
T Consensus       199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~---------------------------------------~~~s~d~~  239 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVS---------------------------------------VSRSKDGR  239 (414)
T ss_dssp             GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEE---------------------------------------EEE-TTSS
T ss_pred             CCCcEEEEEECCCChHhCeeEEeecCCCcEEEE---------------------------------------EEecCccc
Confidence                3777777665432111222222111 111                                       34778888


Q ss_pred             cEEEEecCCc--CeEEEEeCCCc----ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee--cCCCcE
Q 022870          162 KYMAVAGEQL--SEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG--YEDGSI  233 (291)
Q Consensus       162 ~~~~~~g~~d--~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g--~~dg~i  233 (291)
                      .+++.+.+..  ..+.+.|+..+    .....+..        .   ..+....+. .. .   +..++.+.  ..++.|
T Consensus       240 ~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~--------~---~~~~~~~v~-~~-~---~~~yi~Tn~~a~~~~l  303 (414)
T PF02897_consen  240 YLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP--------R---EDGVEYYVD-HH-G---DRLYILTNDDAPNGRL  303 (414)
T ss_dssp             EEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE--------S---SSS-EEEEE-EE-T---TEEEEEE-TT-TT-EE
T ss_pred             EEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC--------C---CCceEEEEE-cc-C---CEEEEeeCCCCCCcEE
Confidence            8877554433  46888898874    22233321        1   112222222 22 1   33244443  235678


Q ss_pred             EEEEccCCCC--ceeecccccc--ceeEEEeecCCCeeEEecCCC--eEEEEEcC
Q 022870          234 LVWDIRNPGI--PLTAMKVHLE--PVLCLSIDESCNGGISGGADQ--KIVLYNLD  282 (291)
Q Consensus       234 ~vwd~~~~~~--~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg--~i~vw~~~  282 (291)
                      ...++.+...  ....+..|..  .+..+....+ .+++..-.++  .|+++++.
T Consensus       304 ~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  304 VAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-YLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-EEEEEEEETTEEEEEEEETT
T ss_pred             EEecccccccccceeEEcCCCCceeEEEEEEECC-EEEEEEEECCccEEEEEECC
Confidence            8888887332  1224455555  4555555544 2344444454  58889988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.57  E-value=0.02  Score=43.65  Aligned_cols=217  Identities=12%  Similarity=0.092  Sum_probs=122.4

Q ss_pred             ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~   93 (291)
                      +.|-+..|.++.|+|+.+.|++......-.||=..+|+.++++....- .--..+.|..  ++.+.++--.++.+.++.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig--~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIG--GNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEec--CCEEEEEehhcceEEEEEE
Confidence            345556699999999988888887777777887778999988764321 2245777777  6666667777889998888


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCe
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  173 (291)
                      .......    .....     .+......                       ..-.+..+++|+|.+..++++ -. -.-
T Consensus       158 d~~t~~~----~~~~~-----~i~L~~~~-----------------------k~N~GfEGlA~d~~~~~l~~a-KE-r~P  203 (316)
T COG3204         158 DADTTVI----SAKVQ-----KIPLGTTN-----------------------KKNKGFEGLAWDPVDHRLFVA-KE-RNP  203 (316)
T ss_pred             cCCccEE----eccce-----EEeccccC-----------------------CCCcCceeeecCCCCceEEEE-Ec-cCC
Confidence            7653211    11111     01000000                       001111228899999888864 33 345


Q ss_pred             EEEEeCCCcceeeEecccccCCCCCCCCCc---ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc
Q 022870          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKG---RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (291)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (291)
                      +.||.+.............     .+....   -..+.++. |++.  .+. .++-+.+++.+.-.|..  +.++..+..
T Consensus       204 ~~I~~~~~~~~~l~~~~~~-----~~~~~~~~f~~DvSgl~-~~~~--~~~-LLVLS~ESr~l~Evd~~--G~~~~~lsL  272 (316)
T COG3204         204 IGIFEVTQSPSSLSVHASL-----DPTADRDLFVLDVSGLE-FNAI--TNS-LLVLSDESRRLLEVDLS--GEVIELLSL  272 (316)
T ss_pred             cEEEEEecCCccccccccc-----CcccccceEeeccccce-ecCC--CCc-EEEEecCCceEEEEecC--CCeeeeEEe
Confidence            6666655332111111000     111110   11233444 7665  244 88888899999888877  454444332


Q ss_pred             cc---------cceeEEEeecCCCeeEEecCCCeEEEE
Q 022870          251 HL---------EPVLCLSIDESCNGGISGGADQKIVLY  279 (291)
Q Consensus       251 h~---------~~v~~~~~~~~~~~l~s~s~dg~i~vw  279 (291)
                      +.         ..--+++.+.+|. |...|+-+..+.+
T Consensus       273 ~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy~F  309 (316)
T COG3204         273 TKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFYRF  309 (316)
T ss_pred             ccCCCCCcccCCCcceeEECCCCC-EEEEecCCcceec
Confidence            21         1345677777776 4444454444443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.52  E-value=0.047  Score=46.71  Aligned_cols=211  Identities=12%  Similarity=0.074  Sum_probs=115.6

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceE---E-------EEEeecCCCCeEEEEeCCCeEEEEECCCCCCC
Q 022870           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV---S-------VATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (291)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~---~-------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~   99 (291)
                      +..++.++.++.|.-.|..+|+.+..+..... ..+.   +       +++.    +..++.++.|+.|.-.|.++++..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~----~~~v~v~t~dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALY----DGKVFFGTLDARLVALDAKTGKVV  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceEE----CCEEEEEcCCCEEEEEECCCCCEE
Confidence            44777788889999999999998887654221 1111   1       1222    257778888999999999999876


Q ss_pred             CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC----CcCeEE
Q 022870          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE----QLSEVE  175 (291)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~d~~i~  175 (291)
                      .+...  ......   ......+                               + + .+ ..+++.+++    .+|.|.
T Consensus       144 W~~~~--~~~~~~---~~~tssP-------------------------------~-v-~~-g~Vivg~~~~~~~~~G~v~  184 (527)
T TIGR03075       144 WSKKN--GDYKAG---YTITAAP-------------------------------L-V-VK-GKVITGISGGEFGVRGYVT  184 (527)
T ss_pred             eeccc--cccccc---ccccCCc-------------------------------E-E-EC-CEEEEeecccccCCCcEEE
Confidence            52111  000000   0000000                               0 0 12 234432221    268899


Q ss_pred             EEeCCCcceeeEecccccCCC------------CCCC-------CCcceeeeeEEEecCCCCCCceEEEeec---CCC--
Q 022870          176 IWDLNTAERCTRLHQNSCGGS------------PNFS-------SKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDG--  231 (291)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~~------------~~~~-------~~~~~~~~~~~~~~p~~~~g~~~l~~g~---~dg--  231 (291)
                      -+|.++++.+-++........            .+..       ....+.++..-++.|.  .+..|+-+|.   .++  
T Consensus       185 AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~--~~lvy~~tGnp~p~~~~~  262 (527)
T TIGR03075       185 AYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPE--TNLIYFGTGNPSPWNSHL  262 (527)
T ss_pred             EEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCC--CCeEEEeCCCCCCCCCCC
Confidence            999999998877653211100            0000       0001122211125544  2332333332   112  


Q ss_pred             ---------cEEEEEccCCCCceeeccccccceeE---------EEeecCCC---eeEEecCCCeEEEEEcCCCcee
Q 022870          232 ---------SILVWDIRNPGIPLTAMKVHLEPVLC---------LSIDESCN---GGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       232 ---------~i~vwd~~~~~~~~~~~~~h~~~v~~---------~~~~~~~~---~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                               .|.-.|+++ ++....++.....++.         +....+|+   .++.+..+|.+++.|.++++++
T Consensus       263 r~gdnl~~~s~vAld~~T-G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       263 RPGDNLYTSSIVARDPDT-GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCCCccceeEEEEcccc-CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence                     677888888 7777766642222211         12224565   7889999999999999999986

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.51  E-value=0.035  Score=45.05  Aligned_cols=219  Identities=10%  Similarity=0.049  Sum_probs=94.5

Q ss_pred             CCCCCCceEEecC---Cc----cceeEEEEcCCCCEEEEec--C----CCeEEEEeCCCCeEEEEEeeecC-CcceEEEE
Q 022870            4 RPPPPDPVAVLRG---HR----ASVTDVCFHQTKPILFAGT--T----GGELRIWDTVQHRTVSSSWVHSA-AHGIVSVA   69 (291)
Q Consensus         4 ~~~~~~~~~~l~~---h~----~~v~~l~~~~~~~~l~s~~--~----dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~   69 (291)
                      +|..++..++++.   +.    ..-..+..-|+|..++|+-  .    -|-+.+.|-++.+.....+.... ...-+.+.
T Consensus       108 dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw  187 (461)
T PF05694_consen  108 DPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFW  187 (461)
T ss_dssp             -TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EE
T ss_pred             CCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeE
Confidence            5666677777774   22    2233344557898887752  2    25688889887777777665332 22356777


Q ss_pred             EeecCCCCeEEEEeC--------------------CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccC
Q 022870           70 TGPSIGLNKVISQGR--------------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA  129 (291)
Q Consensus        70 ~~~~~~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (291)
                      |.|  ..+.++|...                    -.++.+||+.+.+.++  .+.+.........+.+           
T Consensus       188 ~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q--~idLg~~g~~pLEvRf-----------  252 (461)
T PF05694_consen  188 YQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ--TIDLGEEGQMPLEVRF-----------  252 (461)
T ss_dssp             EET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE--EEES-TTEEEEEEEEE-----------
T ss_pred             EcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee--EEecCCCCCceEEEEe-----------
Confidence            888  6677777643                    3579999999887644  2233222222222222           


Q ss_pred             CCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEE-eCCCcc----eeeEecccccCCCCCCC----
Q 022870          130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW-DLNTAE----RCTRLHQNSCGGSPNFS----  200 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~w-d~~~~~----~~~~~~~~~~~~~~~~~----  200 (291)
                                               ...|+..+-++.+.- ..+|..| ..+.++    .+..+....-.   +-.    
T Consensus       253 -------------------------lH~P~~~~gFvg~aL-ss~i~~~~k~~~g~W~a~kVi~ip~~~v~---~~~lp~m  303 (461)
T PF05694_consen  253 -------------------------LHDPDANYGFVGCAL-SSSIWRFYKDDDGEWAAEKVIDIPAKKVE---GWILPEM  303 (461)
T ss_dssp             --------------------------SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE-----SS---GG
T ss_pred             -------------------------cCCCCccceEEEEec-cceEEEEEEcCCCCeeeeEEEECCCcccC---ccccccc
Confidence                                     245665555554443 3444444 323332    12222210000   000    


Q ss_pred             ----CCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc---c-------c--------ccceeEE
Q 022870          201 ----SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK---V-------H--------LEPVLCL  258 (291)
Q Consensus       201 ----~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~-------h--------~~~v~~~  258 (291)
                          ......++.+. .+.|   ++.+.+++-..|.|+.||+.++.++...-+   +       |        .+...-|
T Consensus       304 l~~~~~~P~LitDI~-iSlD---DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv  379 (461)
T PF05694_consen  304 LKPFGAVPPLITDIL-ISLD---DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV  379 (461)
T ss_dssp             GGGG-EE------EE-E-TT---S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred             ccccccCCCceEeEE-EccC---CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence                00135677776 8887   553556667899999999998766543321   1       0        1123456


Q ss_pred             EeecCCCeeEEe
Q 022870          259 SIDESCNGGISG  270 (291)
Q Consensus       259 ~~~~~~~~l~s~  270 (291)
                      ..|-||+.|...
T Consensus       380 qlS~DGkRlYvT  391 (461)
T PF05694_consen  380 QLSLDGKRLYVT  391 (461)
T ss_dssp             EE-TTSSEEEEE
T ss_pred             EEccCCeEEEEE
Confidence            677788877543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.44  E-value=0.039  Score=49.99  Aligned_cols=162  Identities=10%  Similarity=0.014  Sum_probs=83.6

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeC----CC-------------------CeEEEEEeeecC------------
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDT----VQ-------------------HRTVSSSWVHSA------------   61 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~----~~-------------------~~~~~~~~~~~~------------   61 (291)
                      -...|.+++|+||+..++..+.++++.+-+.    -.                   |+....+++..+            
T Consensus       108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek  187 (1265)
T KOG1920|consen  108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK  187 (1265)
T ss_pred             ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence            3578999999999999998888888766442    11                   111112221100            


Q ss_pred             -------CcceEEEEEeecCCCCeEEEE-----eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccC
Q 022870           62 -------AHGIVSVATGPSIGLNKVISQ-----GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA  129 (291)
Q Consensus        62 -------~~~v~~~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (291)
                             .+.=++|.|--  ||.++++.     .....|++||-+ +.+..  .-.-.....+...+.+.++-+...-..
T Consensus       188 ~~~~~~~~~~~~~IsWRg--Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns--~se~~~~l~~~LsWkPsgs~iA~iq~~  262 (1265)
T KOG1920|consen  188 ALEQIEQDDHKTSISWRG--DGEYFAVSFVESETGTRKIRVYDRE-GALNS--TSEPVEGLQHSLSWKPSGSLIAAIQCK  262 (1265)
T ss_pred             cccchhhccCCceEEEcc--CCcEEEEEEEeccCCceeEEEeccc-chhhc--ccCcccccccceeecCCCCeEeeeeec
Confidence                   01124588988  98888873     223789999987 43321  111112222333344433222222222


Q ss_pred             CCCceeeecccCccccc------cCCCC--CCcccCCCCCcEEEEecCCcCe-EEEEeCCCcc
Q 022870          130 NEPKDCYEREVGETVDT------DSLCD--SKDDVPAEGPKYMAVAGEQLSE-VEIWDLNTAE  183 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~g~~d~~-i~~wd~~~~~  183 (291)
                      .....+.-+........      .....  ..++|+.++.-+.+.+....+. |++|-+.+..
T Consensus       263 ~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  263 TSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            22222332322221111      11111  1189999987665544444444 9999987654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.009  Score=51.82  Aligned_cols=117  Identities=15%  Similarity=0.270  Sum_probs=64.8

Q ss_pred             CCCCcEEEEecCCcC----eEEEEeCCCc------ceeeEecccccCCCCCCCCCc-ceeeeeEEEecCCCCCCceEEEe
Q 022870          158 AEGPKYMAVAGEQLS----EVEIWDLNTA------ERCTRLHQNSCGGSPNFSSKG-RGMCMAVQAYLPSKSQGFVNVLA  226 (291)
Q Consensus       158 ~~~~~~~~~~g~~d~----~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~l~~  226 (291)
                      -++..++++.|..++    .+++||++..      +++......      .+..+. ..+..+++ .+.+-.    .+|+
T Consensus        74 ~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~------~~~np~~~~p~s~l~-Vs~~l~----~Iv~  142 (933)
T KOG2114|consen   74 LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIF------TIKNPTNPSPASSLA-VSEDLK----TIVC  142 (933)
T ss_pred             ccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeee------ccCCCCCCCcceEEE-EEcccc----EEEE
Confidence            344456666666555    6999998743      222111100      222221 22333333 555422    8999


Q ss_pred             ecCCCcEEEEEc---cCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          227 GYEDGSILVWDI---RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       227 g~~dg~i~vwd~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      |-.||.|..+.-   +..+....-......+|+++++..++..++-...-..|.+|.+....
T Consensus       143 Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~  204 (933)
T KOG2114|consen  143 GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT  204 (933)
T ss_pred             EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence            999999999853   22122111122236799999996666652222234578899888544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.43  E-value=0.036  Score=43.13  Aligned_cols=236  Identities=14%  Similarity=0.101  Sum_probs=113.6

Q ss_pred             CCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCc--c-
Q 022870           28 QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS--L-  104 (291)
Q Consensus        28 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~-  104 (291)
                      ..++.|+.|+.+| +.+++.........+. +.  .+|..+...|  +-+.|++-+ |+.+.++++..........  . 
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~--~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KL--SSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ec--ceEEEEEEec--ccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence            3567899999998 8999983332222222 22  2399999999  666666655 4999999988654332100  0 


Q ss_pred             --------ccccceEEEEEee---cccCccceeccCCCCceeeecccCc----cccc--cCCCCCC-cccCCCCCcEEEE
Q 022870          105 --------TIKTNSYHFCKLS---LVKEPYANAKQANEPKDCYEREVGE----TVDT--DSLCDSK-DDVPAEGPKYMAV  166 (291)
Q Consensus       105 --------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~-~~~~~~~~~~~~~  166 (291)
                              .+.. ......+.   .................++......    ....  .++.... ++|.  ++.+++ 
T Consensus        78 ~~~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v-  153 (275)
T PF00780_consen   78 PKSRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICV-  153 (275)
T ss_pred             cccccccccccc-cCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEE-
Confidence                    0100 00111111   1111111122222233334333311    1111  1111111 5666  334443 


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                       |. .+...+.|+.++.....+............. .......+.... +   ++ +|++-  |..-.+.|..  +++.+
T Consensus       154 -~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-~---~e-~Ll~~--~~~g~fv~~~--G~~~r  221 (275)
T PF00780_consen  154 -GT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRN-SSSKPLGIFQLS-D---NE-FLLCY--DNIGVFVNKN--GEPSR  221 (275)
T ss_pred             -Ee-CCceEEEecCCCCceEEeCccCCcchhhhcc-cCCCceEEEEeC-C---ce-EEEEe--cceEEEEcCC--CCcCc
Confidence             33 3568899999776544332110000000000 011112221122 1   22 55543  3334444544  44443


Q ss_pred             --eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          247 --AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       247 --~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                        .+.- ...+.++++...  +|+..+.+ .|.||++.++++++++
T Consensus       222 ~~~i~W-~~~p~~~~~~~p--yli~~~~~-~iEV~~~~~~~lvQ~i  263 (275)
T PF00780_consen  222 KSTIQW-SSAPQSVAYSSP--YLIAFSSN-SIEVRSLETGELVQTI  263 (275)
T ss_pred             ccEEEc-CCchhEEEEECC--EEEEECCC-EEEEEECcCCcEEEEE
Confidence              2332 346677777554  77777654 5999999999999876

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.31  E-value=0.088  Score=45.09  Aligned_cols=69  Identities=23%  Similarity=0.209  Sum_probs=42.7

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe------CCCeEEEEECCCCCCCC
Q 022870           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG------RDGTVKCWDIENGGLSS  100 (291)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~  100 (291)
                      ..++.++.|+.|.-.|.++|+.+......... .-..+.-+|...+..++.+.      .+|.|.-+|.++++.+.
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~-~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW  195 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYK-AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVW  195 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeeccccccc-ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence            46777888999999999999988776532110 00111111211124555543      26899999999988765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.29  E-value=0.046  Score=41.49  Aligned_cols=185  Identities=11%  Similarity=0.080  Sum_probs=99.9

Q ss_pred             eeEEEEcCCCCEEEEecCCC--eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870           21 VTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~   98 (291)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.+++.......... -.--.++...  + ....-.=.++...+||..+.+.
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~--d-~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILG--D-KLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEET--T-EEEEEESSSSEEEEEETTTTEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEEC--C-EEEEEEecCCeEEEEccccceE
Confidence            34588877887777776655  699999999988776654432 2233444444  3 4444455678999999987654


Q ss_pred             CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD  178 (291)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd  178 (291)
                      ..  .+......                                           --...++..++.+-|+  ..++.+|
T Consensus       123 ~~--~~~y~~EG-------------------------------------------WGLt~dg~~Li~SDGS--~~L~~~d  155 (264)
T PF05096_consen  123 IG--TFPYPGEG-------------------------------------------WGLTSDGKRLIMSDGS--SRLYFLD  155 (264)
T ss_dssp             EE--EEE-SSS---------------------------------------------EEEECSSCEEEE-SS--SEEEEE-
T ss_pred             EE--EEecCCcc-------------------------------------------eEEEcCCCEEEEECCc--cceEEEC
Confidence            32  11111111                                           1123567788876665  6899999


Q ss_pred             CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc---------
Q 022870          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK---------  249 (291)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---------  249 (291)
                      ..+.+....+....       ....-....-+. |.    +|. ..|=.-....|...|..+ ++.+..+.         
T Consensus       156 P~~f~~~~~i~V~~-------~g~pv~~LNELE-~i----~G~-IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~  221 (264)
T PF05096_consen  156 PETFKEVRTIQVTD-------NGRPVSNLNELE-YI----NGK-IYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVG  221 (264)
T ss_dssp             TTT-SEEEEEE-EE-------TTEE---EEEEE-EE----TTE-EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHT
T ss_pred             CcccceEEEEEEEE-------CCEECCCcEeEE-EE----cCE-EEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhccc
Confidence            98887766665311       011111222333 32    132 333344455666666666 55443321         


Q ss_pred             ------ccccceeEEEeecCCCee-EEe
Q 022870          250 ------VHLEPVLCLSIDESCNGG-ISG  270 (291)
Q Consensus       250 ------~h~~~v~~~~~~~~~~~l-~s~  270 (291)
                            ...+..++|||+|....| +||
T Consensus       222 ~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  222 RDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             STTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             ccccccccCCeeEeEeEeCCCCEEEEEe
Confidence                  113568999998766555 555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.29  E-value=0.0012  Score=35.51  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      ...|..++|+|+..+||.++.||.|.++.++..+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence            4569999999999999999999999999995443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.26  E-value=0.074  Score=43.11  Aligned_cols=247  Identities=12%  Similarity=0.051  Sum_probs=114.8

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC---------------CcceEEEEEeecCC
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA---------------AHGIVSVATGPSIG   75 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~   75 (291)
                      +..+......+....|+|+|+.++-.. ++.|.+++..++...+.-.....               -+.-..+.|+|  |
T Consensus        35 ~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d  111 (353)
T PF00930_consen   35 ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--D  111 (353)
T ss_dssp             EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--T
T ss_pred             eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC--C
Confidence            333443356789999999999988775 57899999877754432111100               01135788999  9


Q ss_pred             CCeEEEEeC-CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCC----C
Q 022870           76 LNKVISQGR-DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL----C  150 (291)
Q Consensus        76 ~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  150 (291)
                      +++|+.... +..|..+.+........     .-...........+.+.     ....+.++++...+.......    .
T Consensus       112 ~~~la~~~~d~~~v~~~~~~~~~~~~~-----~yp~~~~~~YPk~G~~n-----p~v~l~v~~~~~~~~~~~~~~~~~~~  181 (353)
T PF00930_consen  112 SKYLAFLRFDEREVPEYPLPDYSPPDS-----QYPEVESIRYPKAGDPN-----PRVSLFVVDLASGKTTELDPPNSLNP  181 (353)
T ss_dssp             SSEEEEEEEE-TTS-EEEEEEESSSTE-----SS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE---HHHHT
T ss_pred             CCEEEEEEECCcCCceEEeeccCCccc-----cCCcccccccCCCCCcC-----CceEEEEEECCCCcEEEeeeccccCC
Confidence            998886554 44455554432111000     00000111111111110     011122233333322111111    0


Q ss_pred             CCC----cccCCCCCcEEEEecCCc---CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEec-CCCCCCce
Q 022870          151 DSK----DDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL-PSKSQGFV  222 (291)
Q Consensus       151 ~~~----~~~~~~~~~~~~~~g~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~  222 (291)
                      ...    +.|.+++..+++....++   ..+.++|..+++........       ..... ....... |. ++   +..
T Consensus       182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-------~~~Wv-~~~~~~~-~~~~~---~~~  249 (353)
T PF00930_consen  182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET-------SDGWV-DVYDPPH-FLGPD---GNE  249 (353)
T ss_dssp             SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE-------SSSSS-SSSSEEE-E-TTT---SSE
T ss_pred             CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec-------CCcce-eeecccc-cccCC---CCE
Confidence            111    778888875555443332   33667788776654444321       11111 1111122 44 54   222


Q ss_pred             EEEeecCCCcEEEEEccCCCCceeeccccccceeE-EEeecCCCee-EEecCC----CeEEEEEcC
Q 022870          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC-LSIDESCNGG-ISGGAD----QKIVLYNLD  282 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l-~s~s~d----g~i~vw~~~  282 (291)
                      +|.....+|.-+||-+...+.....+....-.|.. +.|+++++.| .++..+    ..|..-+++
T Consensus       250 ~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~  315 (353)
T PF00930_consen  250 FLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD  315 (353)
T ss_dssp             EEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred             EEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence            66666688865555554434555566655667766 5668876655 355543    245555555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.24  E-value=0.037  Score=45.98  Aligned_cols=57  Identities=12%  Similarity=0.054  Sum_probs=37.2

Q ss_pred             EEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      .|...+ ++.|.+||..+ ++.+..+..  .+|..+.|++++.+++-.+.+ .+.+++.+..
T Consensus       119 LL~~~~-~~~i~~yDw~~-~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  119 LLGVKS-SDFICFYDWET-GKLIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             SEEEEE-TTEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             EEEEEC-CCCEEEEEhhH-cceeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence            455544 44899999998 888888874  348999999999999888755 6788776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.025  Score=46.66  Aligned_cols=98  Identities=12%  Similarity=0.099  Sum_probs=62.9

Q ss_pred             cCCcCeEEEEeCCCcce--eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          168 GEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                      |-.|..|.-||+|-...  +...+        +|.-.....-.   ||...++ |  +|++|+.+|.|++||. .+.+.-
T Consensus       400 GLs~n~vfriDpRv~~~~kl~~~q--------~kqy~~k~nFs---c~aTT~s-G--~IvvgS~~GdIRLYdr-i~~~AK  464 (644)
T KOG2395|consen  400 GLSDNSVFRIDPRVQGKNKLAVVQ--------SKQYSTKNNFS---CFATTES-G--YIVVGSLKGDIRLYDR-IGRRAK  464 (644)
T ss_pred             eecCCceEEecccccCcceeeeee--------ccccccccccc---eeeecCC-c--eEEEeecCCcEEeehh-hhhhhh
Confidence            44578999999984332  11111        23221111111   2333322 5  8999999999999997 424444


Q ss_pred             eeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      ..+.+-..+|..+..+.+|++|++.+ +..+.+-++
T Consensus       465 TAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  465 TALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             hcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            56777788999999999999887665 556666554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.20  E-value=0.073  Score=41.92  Aligned_cols=203  Identities=14%  Similarity=0.104  Sum_probs=107.2

Q ss_pred             EEcCCCC-EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCc
Q 022870           25 CFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS  103 (291)
Q Consensus        25 ~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  103 (291)
                      .|.++.. ++.+--..+.|.-|+..+++.. .+...   ..+.++....  .+..|+++..  -+.+++.+++.... ..
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p---~~~~~~~~~d--~~g~Lv~~~~--g~~~~~~~~~~~~t-~~  101 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP---GGFSSGALID--AGGRLIACEH--GVRLLDPDTGGKIT-LL  101 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC---CCcccceeec--CCCeEEEEcc--ccEEEeccCCceeE-Ee
Confidence            4666555 5566677888999998766432 23323   2255555554  4455555443  36667775443311 00


Q ss_pred             cccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec---------CCcCeE
Q 022870          104 LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG---------EQLSEV  174 (291)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~d~~i  174 (291)
                      .........                                    ..-+.....|+|...+-..+         ..-|.+
T Consensus       102 ~~~~~~~~~------------------------------------~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l  145 (307)
T COG3386         102 AEPEDGLPL------------------------------------NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL  145 (307)
T ss_pred             ccccCCCCc------------------------------------CCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence            000000000                                    00000335667654443222         112445


Q ss_pred             EEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC-CC----C-ceeec
Q 022870          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-PG----I-PLTAM  248 (291)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~-~~----~-~~~~~  248 (291)
                      +.+|. .+...+.+.        .+    -.....++ |+|+   ++.++++=+..+.|+-|++.. .+    + ....+
T Consensus       146 yr~~p-~g~~~~l~~--------~~----~~~~NGla-~SpD---g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~  208 (307)
T COG3386         146 YRVDP-DGGVVRLLD--------DD----LTIPNGLA-FSPD---GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF  208 (307)
T ss_pred             EEEcC-CCCEEEeec--------Cc----EEecCceE-ECCC---CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEc
Confidence            55554 344444443        22    22334454 9999   443555556668899988762 11    1 12223


Q ss_pred             cccccceeEEEeecCCCeeEEecCCC-eEEEEEcCCCceeeee
Q 022870          249 KVHLEPVLCLSIDESCNGGISGGADQ-KIVLYNLDHSTVSHCV  290 (291)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg-~i~vw~~~~~~~~~~~  290 (291)
                      ....+..-.++.+.+|++-+++-.+| .|.+|+.+ ++++..+
T Consensus       209 ~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i  250 (307)
T COG3386         209 DEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI  250 (307)
T ss_pred             cCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE
Confidence            33456777889999999775555454 89999999 7777654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.0011  Score=58.62  Aligned_cols=68  Identities=15%  Similarity=0.304  Sum_probs=54.5

Q ss_pred             EEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      .++.|++.|.+-..|++..-.+...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i  168 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI  168 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence            68999999999999988522222222223579999999999999999999999999999998887653

>PHA02713 hypothetical protein; Provisional

Probab=97.13  E-value=0.067  Score=46.20  Aligned_cols=63  Identities=8%  Similarity=-0.042  Sum_probs=34.8

Q ss_pred             CceEEEeecCC------CcEEEEEccC-CC-CceeeccccccceeEEEeecCCCeeEEecCCC--eEEEEEcCCCc
Q 022870          220 GFVNVLAGYED------GSILVWDIRN-PG-IPLTAMKVHLEPVLCLSIDESCNGGISGGADQ--KIVLYNLDHST  285 (291)
Q Consensus       220 g~~~l~~g~~d------g~i~vwd~~~-~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~i~vw~~~~~~  285 (291)
                      |+ +.+.|+.+      ..+..||..+ .. ..+..+.........+.+  +++..+.|+.||  .+..||..+.+
T Consensus       464 ~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        464 DD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            44 44555543      2467888875 21 222333322222222222  556788999888  77788877665

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.12  Score=42.31  Aligned_cols=180  Identities=14%  Similarity=0.128  Sum_probs=110.3

Q ss_pred             ceeEEEEcCCCCEEEEecC---CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCCeEEEEECCC
Q 022870           20 SVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN   95 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~   95 (291)
                      .-..+++++++..++.+..   ++++.+.|..+.+.........  .| ..+++.|  +|..++... .++.|.+.|...
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~--~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~  191 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN--TP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--Cc-ceEEECC--CCCeEEEEecCCCeEEEEeCCC
Confidence            4567889998877766654   6899999988888888754433  34 8999999  988666554 788999999766


Q ss_pred             CCCCC-CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC-CcCe
Q 022870           96 GGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-QLSE  173 (291)
Q Consensus        96 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~  173 (291)
                      ....+ .........                                       .....+.++|+|.++.+.... .++.
T Consensus       192 ~~v~~~~~~~~~~~~---------------------------------------~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         192 NSVVRGSVGSLVGVG---------------------------------------TGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             cceeccccccccccC---------------------------------------CCCceEEECCCCCEEEEEeccCCCce
Confidence            54321 000000000                                       000016688999876654332 2368


Q ss_pred             EEEEeCCCcceeeE-ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee-cCCCcEEEEEccCCCCceeecccc
Q 022870          174 VEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPGIPLTAMKVH  251 (291)
Q Consensus       174 i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~h  251 (291)
                      +...|..++..... +..       +    .. ....+. +.|+   |. ++.+. +..+.+.+.|..+ ..........
T Consensus       233 v~~id~~~~~v~~~~~~~-------~----~~-~~~~v~-~~p~---g~-~~yv~~~~~~~V~vid~~~-~~v~~~~~~~  294 (381)
T COG3391         233 VLKIDTATGNVTATDLPV-------G----SG-APRGVA-VDPA---GK-AAYVANSQGGTVSVIDGAT-DRVVKTGPTG  294 (381)
T ss_pred             EEEEeCCCceEEEecccc-------c----cC-CCCcee-ECCC---CC-EEEEEecCCCeEEEEeCCC-Cceeeeeccc
Confidence            99999988776554 221       0    11 233343 8888   44 55555 4458899999887 5555443322


Q ss_pred             c---cceeEEEee
Q 022870          252 L---EPVLCLSID  261 (291)
Q Consensus       252 ~---~~v~~~~~~  261 (291)
                      .   ..+..+++.
T Consensus       295 ~~~~~~~~~~~~~  307 (381)
T COG3391         295 NEALGEPVSIAIS  307 (381)
T ss_pred             ccccccceeccce
Confidence            2   234455553

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.94  E-value=0.019  Score=43.50  Aligned_cols=103  Identities=17%  Similarity=0.087  Sum_probs=74.7

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC----
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE----  229 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~----  229 (291)
                      ++|+|.-+.-++.+---.-...++|....+.+.++.......+.+|     +      .|+|+   |+ +|++.-+    
T Consensus        73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH-----G------vfs~d---G~-~LYATEndfd~  137 (366)
T COG3490          73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH-----G------VFSPD---GR-LLYATENDFDP  137 (366)
T ss_pred             eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc-----c------ccCCC---Cc-EEEeecCCCCC
Confidence            7788888777776544334578999999888777764322222222     1      39998   55 6655433    


Q ss_pred             -CCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec
Q 022870          230 -DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG  271 (291)
Q Consensus       230 -dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  271 (291)
                       -|.|-|||.+...+.+.++..|.-....+.|.+||+.|+.+.
T Consensus       138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             CCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence             378999999986788889999888889999999999887653

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.0049  Score=54.74  Aligned_cols=73  Identities=23%  Similarity=0.455  Sum_probs=56.2

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC-CCCeEEEEeCCCeEEEEECC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~   94 (291)
                      .++|++++|+.+|..++.|-.+|.|.+||...++.++.+..+..+  .+.+-+.-.. ++..++++..-|.  +|.+.
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap--~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP--VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc--cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            578999999999999999999999999999999998888777643  4444333211 4456888887776  56543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.81  E-value=0.044  Score=44.38  Aligned_cols=65  Identities=11%  Similarity=0.103  Sum_probs=45.4

Q ss_pred             cCCCCEEEEe---------cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           27 HQTKPILFAG---------TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        27 ~~~~~~l~s~---------~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      |||+++++..         +..+.+.|+|+++++....... .  ..+....|+|  +|+.++-.. ++.|.+++..++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~--~~~~~~~~sP--~g~~~~~v~-~~nly~~~~~~~~   74 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P--PKLQDAKWSP--DGKYIAFVR-DNNLYLRDLATGQ   74 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E--TTBSEEEE-S--SSTEEEEEE-TTEEEEESSTTSE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c--cccccceeec--CCCeeEEEe-cCceEEEECCCCC
Confidence            5777777663         2346789999998766554333 3  4489999999  988888776 4789999887663

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.74  E-value=0.18  Score=38.99  Aligned_cols=230  Identities=15%  Similarity=0.109  Sum_probs=120.9

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCC------CC-eEEEEEeeec---CCcceEEEEEeecC----------CCCeE
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTV------QH-RTVSSSWVHS---AAHGIVSVATGPSI----------GLNKV   79 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~------~~-~~~~~~~~~~---~~~~v~~~~~~~~~----------~~~~l   79 (291)
                      .-+.|+|+|.+.+-++...-+...+||.+      .. .++-++....   .+...+.+.|+...          ....+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45789999988777877778899999986      12 2233333211   11347788887521          01246


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCC-ccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccC-
Q 022870           80 ISQGRDGTVKCWDIENGGLSSNP-SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP-  157 (291)
Q Consensus        80 ~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (291)
                      +.+++||+|.-|...-......+ ......... .            ..+.                       .+++. 
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~-g------------avYk-----------------------GLAi~~  147 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ-G------------NVYK-----------------------GLAVGP  147 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCC-c------------ceee-----------------------eeEEee
Confidence            77889999999986433220000 000100000 0            0000                       02222 


Q ss_pred             -CCCCcEEEEecCCcCeEEEEeCCCccee--eEecccccCCCC-CCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870          158 -AEGPKYMAVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       158 -~~~~~~~~~~g~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                       ..+..|.+ +--..++|.+||-.-.+..  ..+..+.++.-. .+....-+.-.-+. |.....+++ .=+.|..-|.|
T Consensus       148 ~~~~~~LYa-adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVt-YA~qd~~~~-d~v~G~G~G~V  224 (336)
T TIGR03118       148 TGGGDYLYA-ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVT-YAQQDADRN-DEVAGAGLGYV  224 (336)
T ss_pred             cCCCceEEE-eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEE-EEecCCccc-ccccCCCcceE
Confidence             22444444 5667889999986543321  111111000000 00000000011111 222222122 33455566899


Q ss_pred             EEEEccCCCCceeecc--ccccceeEEEee------cCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          234 LVWDIRNPGIPLTAMK--VHLEPVLCLSID------ESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~--~h~~~v~~~~~~------~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      -+||+.  ++.++++.  +.-...+.|+..      ..+.+|+--=.||+|..+|..+++.+-.+
T Consensus       225 dvFd~~--G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L  287 (336)
T TIGR03118       225 NVFTLN--GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL  287 (336)
T ss_pred             EEEcCC--CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence            999988  78888774  223355777763      35667777667999999999998876543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.65  E-value=0.28  Score=40.09  Aligned_cols=106  Identities=11%  Similarity=0.130  Sum_probs=54.6

Q ss_pred             cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC----
Q 022870          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI----  243 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~----  243 (291)
                      +....++.+||+.+.+.++++..       +.   .......+. |..+..... -++.+.-...|..|-....++    
T Consensus       218 ~~yG~~l~vWD~~~r~~~Q~idL-------g~---~g~~pLEvR-flH~P~~~~-gFvg~aLss~i~~~~k~~~g~W~a~  285 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRKLLQTIDL-------GE---EGQMPLEVR-FLHDPDANY-GFVGCALSSSIWRFYKDDDGEWAAE  285 (461)
T ss_dssp             H-S--EEEEEETTTTEEEEEEES--------T---TEEEEEEEE-E-SSTT--E-EEEEEE--EEEEEEEE-ETTEEEEE
T ss_pred             ccccCeEEEEECCCCcEeeEEec-------CC---CCCceEEEE-ecCCCCccc-eEEEEeccceEEEEEEcCCCCeeee
Confidence            33457899999999999999874       21   234566666 665533222 344444555666655422121    


Q ss_pred             ceeecc-----------------ccccceeEEEeecCCCeeEEec-CCCeEEEEEcCCCc
Q 022870          244 PLTAMK-----------------VHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHST  285 (291)
Q Consensus       244 ~~~~~~-----------------~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~~~~~  285 (291)
                      .+..+.                 .-..-|+.|..|.|.++|..+. .+|.||.||+....
T Consensus       286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            111111                 1124578999999999986554 68999999998644

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.60  E-value=0.086  Score=46.76  Aligned_cols=65  Identities=14%  Similarity=0.102  Sum_probs=43.3

Q ss_pred             CEEEE-ecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeec---CCCCeEEEEeCCCeEEEEECCCC
Q 022870           31 PILFA-GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS---IGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        31 ~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      ++|+. ......|.-.|++.|+.+..+..+.. .+|..++-...   .....-+.|-.+..|..||.+-.
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~-~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~  562 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDD-IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS  562 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCC-cceeEecccccccccCCCceEEEECCCceEEeccCCC
Confidence            34443 34567888999999999999998864 33555543210   01245566777788999999854

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.41  E-value=0.38  Score=42.75  Aligned_cols=80  Identities=14%  Similarity=0.147  Sum_probs=53.0

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCC----------CeE---EEEEe------eecCCcceEEEEEeecC-CC
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----------HRT---VSSSW------VHSAAHGIVSVATGPSI-GL   76 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~----------~~~---~~~~~------~~~~~~~v~~~~~~~~~-~~   76 (291)
                      -.-.|..+.++|+|.+++..|..|.+.+ .+..          ++.   -+++.      .......|..+.|+|.. ++
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            3457899999999999998888765433 3321          111   11111      01112459999999942 24


Q ss_pred             CeEEEEeCCCeEEEEECCCCC
Q 022870           77 NKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        77 ~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      ..|+.-..|+++|+||+....
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCC
Confidence            788888899999999997544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.35  E-value=0.4  Score=38.34  Aligned_cols=184  Identities=13%  Similarity=0.203  Sum_probs=94.1

Q ss_pred             CCEEEEecC----------CCeEEEEeCCCC----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870           30 KPILFAGTT----------GGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        30 ~~~l~s~~~----------dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~   95 (291)
                      ..+++.|+.          .|.|.++++.+.    ..+..+..+.-..+|++++-..    .+|+.+. .+.|.+|++..
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~----~~lv~~~-g~~l~v~~l~~  116 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN----GRLVVAV-GNKLYVYDLDN  116 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET----TEEEEEE-TTEEEEEEEET
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC----CEEEEee-cCEEEEEEccC
Confidence            467777643          289999999874    2333332233236699998775    3444444 37899999998


Q ss_pred             CC-CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeE
Q 022870           96 GG-LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (291)
Q Consensus        96 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  174 (291)
                      .+ ...  ..........                                         .+....++.++  .|+.-..+
T Consensus       117 ~~~l~~--~~~~~~~~~i-----------------------------------------~sl~~~~~~I~--vgD~~~sv  151 (321)
T PF03178_consen  117 SKTLLK--KAFYDSPFYI-----------------------------------------TSLSVFKNYIL--VGDAMKSV  151 (321)
T ss_dssp             TSSEEE--EEEE-BSSSE-----------------------------------------EEEEEETTEEE--EEESSSSE
T ss_pred             cccchh--hheecceEEE-----------------------------------------EEEeccccEEE--EEEcccCE
Confidence            76 221  1011110000                                         11222334444  35545667


Q ss_pred             EEEeCCC-cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC------CC-cee
Q 022870          175 EIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP------GI-PLT  246 (291)
Q Consensus       175 ~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~------~~-~~~  246 (291)
                      .++..+. ...+..+..          +.....++++. |-++   +. .++++..+|.+.++.....      +. .+.
T Consensus       152 ~~~~~~~~~~~l~~va~----------d~~~~~v~~~~-~l~d---~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~  216 (321)
T PF03178_consen  152 SLLRYDEENNKLILVAR----------DYQPRWVTAAE-FLVD---ED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLE  216 (321)
T ss_dssp             EEEEEETTTE-EEEEEE----------ESS-BEEEEEE-EE-S---SS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEE
T ss_pred             EEEEEEccCCEEEEEEe----------cCCCccEEEEE-EecC---Cc-EEEEEcCCCeEEEEEECCCCcccccccccce
Confidence            7664433 222222321          11244567776 7765   23 7999999999999987621      11 111


Q ss_pred             -ecccc-ccceeEE---EeecC--C------CeeEEecCCCeEEE
Q 022870          247 -AMKVH-LEPVLCL---SIDES--C------NGGISGGADQKIVL  278 (291)
Q Consensus       247 -~~~~h-~~~v~~~---~~~~~--~------~~l~s~s~dg~i~v  278 (291)
                       ...-| ...|+++   ++.|.  +      ..++-++.+|.|.+
T Consensus       217 ~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  217 RISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             EEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             eEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence             11222 3567777   44441  1      23777778888874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.35  E-value=0.47  Score=39.14  Aligned_cols=60  Identities=10%  Similarity=-0.022  Sum_probs=41.2

Q ss_pred             CceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      |+.+|++-+.||.+.+|+-+. ......+.. ---..-+++.+....+++++.+..+.-|..
T Consensus       144 ~~~~IcVQS~DG~L~~feqe~-~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  144 GRDFICVQSMDGSLSFFEQES-FAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             CceEEEEEecCceEEEEeCCc-EEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            345899999999999999774 222222322 223345777777778888888888877765

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.34  E-value=0.03  Score=29.20  Aligned_cols=31  Identities=23%  Similarity=0.214  Sum_probs=25.8

Q ss_pred             cceeEEEEcCC-C--CEEEEecCCCeEEEEeCCC
Q 022870           19 ASVTDVCFHQT-K--PILFAGTTGGELRIWDTVQ   49 (291)
Q Consensus        19 ~~v~~l~~~~~-~--~~l~s~~~dg~v~iwd~~~   49 (291)
                      +.|+++.|+|. +  .+|+.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46899999984 4  5888888889999999985

It contains a characteristic DLL sequence motif.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.31  E-value=0.33  Score=37.00  Aligned_cols=43  Identities=14%  Similarity=0.086  Sum_probs=33.1

Q ss_pred             ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc
Q 022870          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (291)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~  252 (291)
                      ...+..|. .+|++   . .|++...+|.|.+|++.+ -+....+..++
T Consensus       229 ~d~i~kmS-lSPdg---~-~La~ih~sG~lsLW~iPs-L~~~~~W~~~e  271 (282)
T PF15492_consen  229 QDGIFKMS-LSPDG---S-LLACIHFSGSLSLWEIPS-LRLQRSWKQDE  271 (282)
T ss_pred             CCceEEEE-ECCCC---C-EEEEEEcCCeEEEEecCc-chhhcccchhh
Confidence            45677787 99994   4 999999999999999987 55555555433

>PHA03098 kelch-like protein; Provisional

Probab=96.31  E-value=0.63  Score=40.21  Aligned_cols=66  Identities=15%  Similarity=0.104  Sum_probs=33.0

Q ss_pred             CCCEEEEecCCC------eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC-----CeEEEEECCCCC
Q 022870           29 TKPILFAGTTGG------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIENGG   97 (291)
Q Consensus        29 ~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~   97 (291)
                      ++..++.||.++      .+..||..+.+-...-....... -.+++. -  ++..++.||.+     ..+..||..+.+
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~-~~~~~~-~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRK-NPGVTV-F--NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccc-cceEEE-E--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            445666776543      46778877655432111111111 122222 2  44666777765     346677776654


Q ss_pred             C
Q 022870           98 L   98 (291)
Q Consensus        98 ~   98 (291)
                      .
T Consensus       370 W  370 (534)
T PHA03098        370 W  370 (534)
T ss_pred             e
Confidence            3

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.29  E-value=0.67  Score=40.36  Aligned_cols=59  Identities=8%  Similarity=-0.026  Sum_probs=37.1

Q ss_pred             cceeEEEEcCCCCEEEEec------CCC--eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870           19 ASVTDVCFHQTKPILFAGT------TGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      ..+...+++|+|+.++...      .|+  .|.+++.. +.. ..+.. .  .....-.|+|  +|..+++...
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g--~~~t~PsWsp--DG~~lw~v~d  416 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-G--HSLTRPSWSL--DADAVWVVVD  416 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-C--CCCCCceECC--CCCceEEEec
Confidence            3577889999998876554      243  45555643 222 22221 2  2278889999  8888877654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.24  E-value=0.54  Score=40.83  Aligned_cols=75  Identities=16%  Similarity=0.111  Sum_probs=51.4

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~   94 (291)
                      ....-+.-+.-++..+.-+...++.|||...+.....-.. ...++|..+.|....+++.+++.|..+.|.+|--.
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence            3444444455444444444556799999988775544332 22266999999877689999999999999999653

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.21  E-value=0.079  Score=43.42  Aligned_cols=86  Identities=15%  Similarity=0.123  Sum_probs=62.0

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC--CC----------
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--GL----------   76 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~----------   76 (291)
                      .....|......+.+++.+|++++.|+...=|.|.++|+.++..++.+++-.++    .+.|....  ..          
T Consensus       298 ~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA----qc~wi~~~~~~~~~~~~~~~~~  373 (415)
T PF14655_consen  298 PMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA----QCGWIEVPEEGDRDRSNSNSPK  373 (415)
T ss_pred             ceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc----eEEEEEeecccccccccccccC
Confidence            345667777788999999999998888888899999999999888888776543    22221100  00          


Q ss_pred             -----C--eEEEEeCCCeEEEEECCCCCC
Q 022870           77 -----N--KVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        77 -----~--~l~s~~~dg~i~iwd~~~~~~   98 (291)
                           .  +++-+-.-|.|.||.++++..
T Consensus       374 ~~~~~~l~LvIyaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  374 SSSRFALFLVIYAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             CCCcceEEEEEEeccCCeEEEEecCCCCE
Confidence                 1  223466678999999998764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.14  E-value=0.43  Score=36.62  Aligned_cols=55  Identities=16%  Similarity=0.250  Sum_probs=40.3

Q ss_pred             EEcCCCCEEEEecCC-----CeEEEEeCCCC-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           25 CFHQTKPILFAGTTG-----GELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        25 ~~~~~~~~l~s~~~d-----g~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      .|||||.+|+..-.|     |.|-|||...+ +.+.++..|.  -.-..+.+.+  ||+.++.+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G--iGpHev~lm~--DGrtlvvan  180 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG--IGPHEVTLMA--DGRTLVVAN  180 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC--cCcceeEEec--CCcEEEEeC
Confidence            589999988765333     77999998743 4556666665  3367888999  998888654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.06  E-value=0.039  Score=28.74  Aligned_cols=38  Identities=8%  Similarity=0.043  Sum_probs=28.4

Q ss_pred             cceeEEEeecCC---CeeEEecCCCeEEEEEcCCCceeeee
Q 022870          253 EPVLCLSIDESC---NGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       253 ~~v~~~~~~~~~---~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +.|.++.|+|+.   .+|+-+-.-|.|.|+|+++.-..+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~~~QV   41 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFMRRQV   41 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCccceEe
Confidence            358899999744   37787777899999999965444443

It contains a characteristic DLL sequence motif.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.04  E-value=0.55  Score=37.12  Aligned_cols=98  Identities=13%  Similarity=0.106  Sum_probs=56.5

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCC--cceee---EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNT--AERCT---RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (291)
                      ++||||++.+++ +=+..+.|.-|++..  +..-.   .+...      .......+.+     ...   +|. +.+++.
T Consensus       168 la~SpDg~tly~-aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~------~~~G~PDG~~-----vDa---dG~-lw~~a~  231 (307)
T COG3386         168 LAFSPDGKTLYV-ADTPANRIHRYDLDPATGPIGGRRGFVDFD------EEPGLPDGMA-----VDA---DGN-LWVAAV  231 (307)
T ss_pred             eEECCCCCEEEE-EeCCCCeEEEEecCcccCccCCcceEEEcc------CCCCCCCceE-----EeC---CCC-EEEecc
Confidence            899999987766 445467888887763  11100   01000      0111112221     222   254 332444


Q ss_pred             CCC-cEEEEEccCCCCceeeccccccceeEEEe-ecCCCeeEE
Q 022870          229 EDG-SILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGGIS  269 (291)
Q Consensus       229 ~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s  269 (291)
                      .+| .|.+|+..  ++++..+......+++++| .++.+.|..
T Consensus       232 ~~g~~v~~~~pd--G~l~~~i~lP~~~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         232 WGGGRVVRFNPD--GKLLGEIKLPVKRPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             cCCceEEEECCC--CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence            443 89999987  7888888877788999999 555555543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.01  E-value=0.43  Score=35.50  Aligned_cols=103  Identities=15%  Similarity=0.124  Sum_probs=63.9

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEe--CCCcc-----eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWD--LNTAE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (291)
                      ++|+.+.+.+.. .-+.+-+|.-||  ..++.     .+..++..  .+ ..+.. ..+++     ...   +|. +.++
T Consensus       163 l~Wd~d~K~fY~-iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~--~~-~e~~~-PDGm~-----ID~---eG~-L~Va  228 (310)
T KOG4499|consen  163 LAWDSDAKKFYY-IDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS--QP-FESLE-PDGMT-----IDT---EGN-LYVA  228 (310)
T ss_pred             ccccccCcEEEE-EccCceEEeeeecCCCcccccCcceeEEeccC--CC-cCCCC-CCcce-----Ecc---CCc-EEEE
Confidence            888877766554 566677887787  55543     23333310  00 01111 12222     222   265 6677


Q ss_pred             ecCCCcEEEEEccCCCCceeeccccccceeEEEe-ecCCCee-EEec
Q 022870          227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGG-ISGG  271 (291)
Q Consensus       227 g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l-~s~s  271 (291)
                      .-+.|+|...|..+ ++.+.+++-....|++++| .++-..+ +|+.
T Consensus       229 ~~ng~~V~~~dp~t-GK~L~eiklPt~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  229 TFNGGTVQKVDPTT-GKILLEIKLPTPQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             EecCcEEEEECCCC-CcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence            77889999999999 9999999888999999999 4433344 4443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.95  E-value=0.76  Score=37.92  Aligned_cols=73  Identities=12%  Similarity=0.109  Sum_probs=47.6

Q ss_pred             EEEEcCCCCEEEEecCCCeEEE---EeCCC-----CeEEEEEeeecCC---cceEEEEEeec---------CCCCeEEEE
Q 022870           23 DVCFHQTKPILFAGTTGGELRI---WDTVQ-----HRTVSSSWVHSAA---HGIVSVATGPS---------IGLNKVISQ   82 (291)
Q Consensus        23 ~l~~~~~~~~l~s~~~dg~v~i---wd~~~-----~~~~~~~~~~~~~---~~v~~~~~~~~---------~~~~~l~s~   82 (291)
                      .++.+|++..|+.|..+..+.+   |+...     +.......+.-..   +.|+++.+-|.         .|...++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4678899999999988777665   64311     1222222221111   45888887664         245688899


Q ss_pred             eCCCeEEEEECCC
Q 022870           83 GRDGTVKCWDIEN   95 (291)
Q Consensus        83 ~~dg~i~iwd~~~   95 (291)
                      ..+|.|++|....
T Consensus        86 ~ssG~vrfyte~G   98 (415)
T PF14655_consen   86 TSSGYVRFYTENG   98 (415)
T ss_pred             ecccEEEEEeccc
Confidence            9999999999743

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.94  E-value=0.46  Score=35.34  Aligned_cols=80  Identities=5%  Similarity=-0.100  Sum_probs=53.0

Q ss_pred             eeEEEecCCCCCCceEEEeecCCCcEEEEE--ccCC----CCceeeccc----cccceeEEEeecCCCeeEEecCCCeEE
Q 022870          208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWD--IRNP----GIPLTAMKV----HLEPVLCLSIDESCNGGISGGADQKIV  277 (291)
Q Consensus       208 ~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd--~~~~----~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~dg~i~  277 (291)
                      ..++ |..+   .+.+.++-+.+-.|.-||  ..++    .+.+..++.    .+-..-.++.+.+|++.++.=..++|.
T Consensus       161 Ngl~-Wd~d---~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~  236 (310)
T KOG4499|consen  161 NGLA-WDSD---AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQ  236 (310)
T ss_pred             cccc-cccc---CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEE
Confidence            3344 7754   333666777788887787  3331    122333332    122345677788999888888889999


Q ss_pred             EEEcCCCceeeeeC
Q 022870          278 LYNLDHSTVSHCVI  291 (291)
Q Consensus       278 vw~~~~~~~~~~~~  291 (291)
                      ..|..+|++++.++
T Consensus       237 ~~dp~tGK~L~eik  250 (310)
T KOG4499|consen  237 KVDPTTGKILLEIK  250 (310)
T ss_pred             EECCCCCcEEEEEE
Confidence            99999999998763

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.86  E-value=0.0058  Score=53.38  Aligned_cols=67  Identities=15%  Similarity=0.185  Sum_probs=49.8

Q ss_pred             ecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEe-----------ecCCCeeEEecCCCeEEEEEc
Q 022870          213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-----------DESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       213 ~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-----------~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      |.|--.+. .++..+-.++.|++.....  .....+++|...++.++|           +|||..|+..+.||.+++|.+
T Consensus       188 wcp~~~~~-~~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  188 WCPIAVNK-VYICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eccccccc-ceeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            55543323 2888888999999988774  333566778887777664           889999999999999998875


Q ss_pred             C
Q 022870          282 D  282 (291)
Q Consensus       282 ~  282 (291)
                      .
T Consensus       265 y  265 (1283)
T KOG1916|consen  265 Y  265 (1283)
T ss_pred             e
Confidence            3

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.79  E-value=0.024  Score=41.55  Aligned_cols=67  Identities=13%  Similarity=0.128  Sum_probs=42.5

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEE-EEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC
Q 022870           30 KPILFAGTTGGELRIWDTVQHRTVS-SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (291)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~   99 (291)
                      +..++.|+.+|.|.+|+........ .+....  ..|.++--.- +++.+..+++.||.|+.|++...+.+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~--e~i~~~Ip~~-~~~~~~c~~~~dg~ir~~n~~p~k~~  137 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE--ESIDLGIPNG-RDSSLGCVGAQDGRIRACNIKPNKVL  137 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhccc--ccceeccccc-cccceeEEeccCCceeeeccccCcee
Confidence            4578889999999999976321111 111111  2233333222 25568889999999999999877643

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.65  E-value=0.11  Score=47.12  Aligned_cols=122  Identities=11%  Similarity=0.009  Sum_probs=76.5

Q ss_pred             cCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (291)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (291)
                      ..+|+...++...+.+-.|..||+++-..-...+...+ ..............++. |+|.-+.   ..++...|+.|++
T Consensus       108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl-~~s~ts~ek~vf~~~~~-wnP~vp~---n~av~l~dlsl~V  182 (1405)
T KOG3630|consen  108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPL-KNSATSFEKPVFQLKNV-WNPLVPL---NSAVDLSDLSLRV  182 (1405)
T ss_pred             eccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccc-ccccchhcccccccccc-ccCCccc---hhhhhccccchhh
Confidence            45565555554555556799999986432221110000 00011112344556666 9987432   5777888999999


Q ss_pred             EEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       236 wd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      ..+......+..+. -....++++|+|.|+.++.|-..|++.-|...-
T Consensus       183 ~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  183 KSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             hhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence            98875333444443 356789999999999999999999998887553

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.58  E-value=0.98  Score=39.38  Aligned_cols=69  Identities=13%  Similarity=0.123  Sum_probs=37.3

Q ss_pred             eeeeeEEEecCCCCCCceEEEeecCCCcEEE---EEccCCCC-ce---eecc-ccccceeEEEeecCCCeeEEecCCCeE
Q 022870          205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILV---WDIRNPGI-PL---TAMK-VHLEPVLCLSIDESCNGGISGGADQKI  276 (291)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v---wd~~~~~~-~~---~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i  276 (291)
                      +.+..+. |+|+   |. .++... +|.|++   -.... +. .+   ..+. +-...+.++.|.+++.++ .+..++.-
T Consensus       448 g~Issl~-wSpD---G~-RiA~i~-~g~v~Va~Vvr~~~-G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~  519 (591)
T PRK13616        448 GPISELQ-LSRD---GV-RAAMII-GGKVYLAVVEQTED-GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEH  519 (591)
T ss_pred             CCcCeEE-ECCC---CC-EEEEEE-CCEEEEEEEEeCCC-CceeecccEEeecccCCccccceEecCCEEE-EEecCCCC
Confidence            3477776 9999   44 444333 477777   33222 32 11   1122 223346889998888754 44444444


Q ss_pred             EEEEc
Q 022870          277 VLYNL  281 (291)
Q Consensus       277 ~vw~~  281 (291)
                      .+|.+
T Consensus       520 ~v~~v  524 (591)
T PRK13616        520 PVWYV  524 (591)
T ss_pred             ceEEE
Confidence            45543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.57  E-value=1.4  Score=38.31  Aligned_cols=69  Identities=16%  Similarity=0.122  Sum_probs=43.4

Q ss_pred             CCCCEEEEecCCC------eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC------CeEEEEECCC
Q 022870           28 QTKPILFAGTTGG------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIEN   95 (291)
Q Consensus        28 ~~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~   95 (291)
                      ..+.+++.||.++      .+..+|..++.-...-..... ..-.+++...   +...++||.|      .++..||..+
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~~---~~lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVLN---GKLYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEEC---CEEEEEccccCCCcccceEEEecCCC
Confidence            3456778888773      688889877643332222221 2245556555   4777889988      3678899888


Q ss_pred             CCCCC
Q 022870           96 GGLSS  100 (291)
Q Consensus        96 ~~~~~  100 (291)
                      ++...
T Consensus       359 ~~W~~  363 (571)
T KOG4441|consen  359 NQWTP  363 (571)
T ss_pred             Cceec
Confidence            87543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.54  E-value=1.5  Score=39.08  Aligned_cols=43  Identities=16%  Similarity=0.286  Sum_probs=32.3

Q ss_pred             ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      ...+..+. |+|.+.++. .|++=+.|+.+|+||+.....+...+
T Consensus       146 ~~~i~qv~-WhP~s~~~~-~l~vLtsdn~lR~y~~~~~~~p~~v~  188 (717)
T PF10168_consen  146 SLEIKQVR-WHPWSESDS-HLVVLTSDNTLRLYDISDPQHPWQVL  188 (717)
T ss_pred             CceEEEEE-EcCCCCCCC-eEEEEecCCEEEEEecCCCCCCeEEE
Confidence            44566676 999876566 78888899999999998755554443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.51  E-value=0.8  Score=34.95  Aligned_cols=165  Identities=13%  Similarity=0.209  Sum_probs=79.2

Q ss_pred             ceEEEEEeecCCCC-eEEEEeCCCeEEEEECCCCCCCCCCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccC
Q 022870           64 GIVSVATGPSIGLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVG  141 (291)
Q Consensus        64 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (291)
                      .+..++|+|  +.+ ++++....+.|..++.+ ++.++  ...+.. .....                            
T Consensus        23 e~SGLTy~p--d~~tLfaV~d~~~~i~els~~-G~vlr--~i~l~g~~D~Eg----------------------------   69 (248)
T PF06977_consen   23 ELSGLTYNP--DTGTLFAVQDEPGEIYELSLD-GKVLR--RIPLDGFGDYEG----------------------------   69 (248)
T ss_dssp             -EEEEEEET--TTTEEEEEETTTTEEEEEETT---EEE--EEE-SS-SSEEE----------------------------
T ss_pred             CccccEEcC--CCCeEEEEECCCCEEEEEcCC-CCEEE--EEeCCCCCCcee----------------------------
Confidence            499999999  655 55567777888888864 44432  111111 00000                            


Q ss_pred             ccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcc------eeeEecccccCCCCCCCCCcceeeeeEEEecC
Q 022870          142 ETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (291)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  215 (291)
                                  +++..++.  ++.+...++.+.++++....      ....+..       +.....+.-.-.++ |.|
T Consensus        70 ------------I~y~g~~~--~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~N~G~EGla-~D~  127 (248)
T PF06977_consen   70 ------------ITYLGNGR--YVLSEERDQRLYIFTIDDDTTSLDRADVQKISL-------GFPNKGNKGFEGLA-YDP  127 (248)
T ss_dssp             ------------EEE-STTE--EEEEETTTTEEEEEEE----TT--EEEEEEEE----------S---SS--EEEE-EET
T ss_pred             ------------EEEECCCE--EEEEEcCCCcEEEEEEeccccccchhhceEEec-------ccccCCCcceEEEE-EcC
Confidence                        33444443  33356668899999884321      1122221       11111222234454 988


Q ss_pred             CCCCCceEEEeecCCCcEEEEEccC--CCCcee--e------ccccccceeEEEeecC-CCeeEEecCCCeEEEEEcCCC
Q 022870          216 SKSQGFVNVLAGYEDGSILVWDIRN--PGIPLT--A------MKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       216 ~~~~g~~~l~~g~~dg~i~vwd~~~--~~~~~~--~------~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      ..   . .|+++-+..-..+|.++.  ....+.  .      .......+.+++++|. +.+++-+.....|..+| .+|
T Consensus       128 ~~---~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G  202 (248)
T PF06977_consen  128 KT---N-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQG  202 (248)
T ss_dssp             TT---T-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT-
T ss_pred             CC---C-EEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCC
Confidence            73   2 455566666666776653  111111  1      1123346789999875 45666777788888888 555


Q ss_pred             ceee
Q 022870          285 TVSH  288 (291)
Q Consensus       285 ~~~~  288 (291)
                      +.+.
T Consensus       203 ~~~~  206 (248)
T PF06977_consen  203 RVVS  206 (248)
T ss_dssp             -EEE
T ss_pred             CEEE
Confidence            5443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.45  E-value=1.9  Score=38.90  Aligned_cols=72  Identities=13%  Similarity=0.055  Sum_probs=49.5

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCc------ceEEEEEee--------------cCCCCeEEEEeCCCeE
Q 022870           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH------GIVSVATGP--------------SIGLNKVISQGRDGTV   88 (291)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~v~~~~~~~--------------~~~~~~l~s~~~dg~i   88 (291)
                      .+..|+.++.++.|.-.|..+|+.+..+.......      ....+++..              ...+.+++.++.|+.|
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            35578888889999999999999988776433211      012233321              1133588888899999


Q ss_pred             EEEECCCCCCCC
Q 022870           89 KCWDIENGGLSS  100 (291)
Q Consensus        89 ~iwd~~~~~~~~  100 (291)
                      .-.|.++++...
T Consensus       273 iALDA~TGk~~W  284 (764)
T TIGR03074       273 IALDADTGKLCE  284 (764)
T ss_pred             EEEECCCCCEEE
Confidence            999999987643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.41  E-value=2  Score=38.95  Aligned_cols=240  Identities=11%  Similarity=0.088  Sum_probs=116.7

Q ss_pred             eEEEEcCCCCEEEEecCCCeEEEEeCCC------CeEEEEEeeecCCcceEEEEEeecCCCCeEEEE---eCCCeEEEEE
Q 022870           22 TDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ---GRDGTVKCWD   92 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---~~dg~i~iwd   92 (291)
                      .-+...|.++.+...-.+|.+++-.+.+      +....-+...-..-.|..++|........+++.   +.+..++.|+
T Consensus       117 ~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn~rfdel~v~Di~fly~~s~pt~~vly~Ds~~~Hv~~ye  196 (1096)
T KOG1897|consen  117 QILLVDPKGRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFNVRFDELNVYDIKFLYGCSDPTLAVLYKDSDGRHVKTYE  196 (1096)
T ss_pred             eEEEECCCCcEEEEEeecCeEEEEEecccccccCcccccccccccCcceEEEEEEEcCCCCCceEEEEEcCCCcEEEEEE
Confidence            3456678888787788888888877665      233332222222123788888652222345443   4445677887


Q ss_pred             CCCCCCCC-CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-----cccCCCCCcEEEE
Q 022870           93 IENGGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAV  166 (291)
Q Consensus        93 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  166 (291)
                      +.-..... +-... ..........-+...+...+...+...-.+.-...............     ...++++..++  
T Consensus       197 lnl~~ke~~~~~w~-~~v~~~a~~li~VP~~~gGvlV~ge~~I~Y~~~~~~~ai~p~~~~~~t~~~~~~v~~~~~~yL--  273 (1096)
T KOG1897|consen  197 LNLRDKEFVKGPWS-NNVDNGASMLIPVPSPIGGVLVIGEEFIVYMSGDNFVAIAPLTAEQSTIVCYGRVDLQGSRYL--  273 (1096)
T ss_pred             eccchhhccccccc-cccccCCceeeecCCCCceEEEEeeeEEEEeeCCceeEecccccCCceEEEcccccCCccEEE--
Confidence            66442110 00000 00111111222233333333333322222222222111111222222     44567777766  


Q ss_pred             ecCCcCeEEEEeCC-CcceeeE--ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          167 AGEQLSEVEIWDLN-TAERCTR--LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       167 ~g~~d~~i~~wd~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      -|..+|.+...-+. +++....  ++.+.        ........++. +-++   |  ++.+|+.-|.=.+..+.+...
T Consensus       274 l~d~~G~Lf~l~l~~~~e~~s~~~lkve~--------lge~siassi~-~L~n---g--~lFvGS~~gdSqLi~L~~e~d  339 (1096)
T KOG1897|consen  274 LGDEDGMLFKLLLSHTGETVSGLDLKVEY--------LGETSIASSIN-YLDN---G--VLFVGSRFGDSQLIKLNTEPD  339 (1096)
T ss_pred             EecCCCcEEEEEeecccccccceEEEEEe--------cCCcchhhhhh-cccC---c--eEEEeccCCceeeEEccccCC
Confidence            46678888776555 4443322  22100        11133444454 5555   3  799999887777777664211


Q ss_pred             ------ceeeccccccceeEEEe---e--cCCCeeEEec---CCCeEEEEE
Q 022870          244 ------PLTAMKVHLEPVLCLSI---D--ESCNGGISGG---ADQKIVLYN  280 (291)
Q Consensus       244 ------~~~~~~~h~~~v~~~~~---~--~~~~~l~s~s---~dg~i~vw~  280 (291)
                            .+.++. .-+||..++.   +  .+++ +++++   .||++|+..
T Consensus       340 ~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~q-ivtCsGa~kdgSLRiiR  388 (1096)
T KOG1897|consen  340 VGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQ-IVTCSGAFKDGSLRIIR  388 (1096)
T ss_pred             CCchhhhhhhcc-cccceeeEEEEeccccCCce-EEEEeCCCCCCcEEEEe
Confidence                  123333 2468888887   2  2344 55444   378888864

>PHA02713 hypothetical protein; Provisional

Probab=95.32  E-value=0.91  Score=39.43  Aligned_cols=20  Identities=0%  Similarity=-0.052  Sum_probs=15.2

Q ss_pred             CceEEEeecCCC--cEEEEEccC
Q 022870          220 GFVNVLAGYEDG--SILVWDIRN  240 (291)
Q Consensus       220 g~~~l~~g~~dg--~i~vwd~~~  240 (291)
                      |+ +.++|+.+|  .+..||..+
T Consensus       513 ~~-iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        513 NT-IMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CE-EEEEeeecceeehhhcCccc
Confidence            44 778888887  777888876

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.32  E-value=0.76  Score=33.59  Aligned_cols=68  Identities=10%  Similarity=0.000  Sum_probs=38.5

Q ss_pred             CCCEEEEecC--CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCCCCC
Q 022870           29 TKPILFAGTT--GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSS  100 (291)
Q Consensus        29 ~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~  100 (291)
                      +|.++.+.+.  ...|++||+.+++.+.+.......  +..=-...  -++.+. -.=.+|.-..+|.++.+...
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~--~FgEGit~--~gd~~y~LTw~egvaf~~d~~t~~~lg  125 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDT--VFGEGITK--LGDYFYQLTWKEGVAFKYDADTLEELG  125 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCcc--ccccceee--ccceEEEEEeccceeEEEChHHhhhhc
Confidence            4556666554  346999999999887765543211  22211111  123332 33456778888888766543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.31  E-value=1.3  Score=36.02  Aligned_cols=240  Identities=14%  Similarity=0.078  Sum_probs=93.7

Q ss_pred             CCCCCceEEecCCccceeEE-----EEcCCCCEEEEecC-C--CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCC
Q 022870            5 PPPPDPVAVLRGHRASVTDV-----CFHQTKPILFAGTT-G--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL   76 (291)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~l-----~~~~~~~~l~s~~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   76 (291)
                      |..+-.+..|..+...-..+     +|.++|+.|+.++. |  ..+.+-|+++++..+--.+...  ......++|  ++
T Consensus        17 ~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~--~~~g~~~s~--~~   92 (386)
T PF14583_consen   17 PDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD--NTFGGFLSP--DD   92 (386)
T ss_dssp             TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT-EE-T--TS
T ss_pred             CCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC--CccceEEec--CC
Confidence            44444555555433322223     56778876655443 4  4567778888876654433221  133455667  66


Q ss_pred             CeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCccc
Q 022870           77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV  156 (291)
Q Consensus        77 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (291)
                      +.++-...+..|+-.|+++.+..  .++.++..-.....+........          ...+...+.....+.     .+
T Consensus        93 ~~~~Yv~~~~~l~~vdL~T~e~~--~vy~~p~~~~g~gt~v~n~d~t~----------~~g~e~~~~d~~~l~-----~~  155 (386)
T PF14583_consen   93 RALYYVKNGRSLRRVDLDTLEER--VVYEVPDDWKGYGTWVANSDCTK----------LVGIEISREDWKPLT-----KW  155 (386)
T ss_dssp             SEEEEEETTTEEEEEETTT--EE--EEEE--TTEEEEEEEEE-TTSSE----------EEEEEEEGGG----------SH
T ss_pred             CeEEEEECCCeEEEEECCcCcEE--EEEECCcccccccceeeCCCccE----------EEEEEEeehhccCcc-----cc
Confidence            77765555578888999887642  24444443332222211111000          000000000000000     00


Q ss_pred             CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC---CC-c
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DG-S  232 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---dg-~  232 (291)
                      ....+.+.   ..-...|.-.|+.+++....+..             ....--+. |+|..+  . .|+-|.+   +. .
T Consensus       156 ~~f~e~~~---a~p~~~i~~idl~tG~~~~v~~~-------------~~wlgH~~-fsP~dp--~-li~fCHEGpw~~Vd  215 (386)
T PF14583_consen  156 KGFREFYE---ARPHCRIFTIDLKTGERKVVFED-------------TDWLGHVQ-FSPTDP--T-LIMFCHEGPWDLVD  215 (386)
T ss_dssp             HHHHHHHH---C---EEEEEEETTT--EEEEEEE-------------SS-EEEEE-EETTEE--E-EEEEEE-S-TTTSS
T ss_pred             HHHHHHHh---hCCCceEEEEECCCCceeEEEec-------------CccccCcc-cCCCCC--C-EEEEeccCCcceec
Confidence            00001111   11235677788888887666653             23344455 888743  2 4554443   22 1


Q ss_pred             EEEEEccCCCCceeecccccc--ceeEEEeecCCCeeEE-----ecCCCeEEEEEcCCCc
Q 022870          233 ILVWDIRNPGIPLTAMKVHLE--PVLCLSIDESCNGGIS-----GGADQKIVLYNLDHST  285 (291)
Q Consensus       233 i~vwd~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s-----~s~dg~i~vw~~~~~~  285 (291)
                      -|||-+++.+.-...+..|..  .+.-=-|.++|..|.-     ++.+..|.-.|+.+++
T Consensus       216 ~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  216 QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             -SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            366766654555555544432  2223345888876643     2234456667777654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.23  E-value=0.13  Score=38.49  Aligned_cols=60  Identities=15%  Similarity=0.236  Sum_probs=45.6

Q ss_pred             EEEeecCCCcEEEEEccCCCCceee-------cc-------ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          223 NVLAGYEDGSILVWDIRNPGIPLTA-------MK-------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~-------~~-------~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      +|++-+.+|.+++||+.+ .+.+..       +.       .....|..+.++.+|.-|++-+ +|..+.|+.+-+
T Consensus        24 ~Ll~iT~~G~l~vWnl~~-~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   24 YLLAITSSGLLYVWNLKK-GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             EEEEEeCCCeEEEEECCC-CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence            899999999999999997 433211       22       2456788889999998888776 578899987654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.95  E-value=0.4  Score=41.52  Aligned_cols=68  Identities=12%  Similarity=0.189  Sum_probs=42.8

Q ss_pred             EEEeecCCCcEEEEEccC---CCCceee-----------ccc-----------cccceeEEEeec----CCCeeEEecCC
Q 022870          223 NVLAGYEDGSILVWDIRN---PGIPLTA-----------MKV-----------HLEPVLCLSIDE----SCNGGISGGAD  273 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~---~~~~~~~-----------~~~-----------h~~~v~~~~~~~----~~~~l~s~s~d  273 (291)
                      .++.+..||.+.......   .+.....           +.+           ....+.+++++.    +..+|++.+.|
T Consensus       160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D  239 (547)
T PF11715_consen  160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD  239 (547)
T ss_dssp             BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred             EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence            788888899888887764   1211111           110           123445555655    66789999999


Q ss_pred             CeEEEEEcCCCceeeee
Q 022870          274 QKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       274 g~i~vw~~~~~~~~~~~  290 (291)
                      +++|+||+.++++++++
T Consensus       240 ~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  240 HTLRIWSLETGQCLATI  256 (547)
T ss_dssp             SEEEEEETTTTCEEEEE
T ss_pred             CeEEEEECCCCeEEEEe
Confidence            99999999999997653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.90  E-value=2.1  Score=36.52  Aligned_cols=164  Identities=11%  Similarity=0.129  Sum_probs=85.5

Q ss_pred             ccceeEEEEcCCCCEEEEec--CCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC--CCCeEEEEeCCCeEEEEEC
Q 022870           18 RASVTDVCFHQTKPILFAGT--TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--GLNKVISQGRDGTVKCWDI   93 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~   93 (291)
                      -.+|..++|..-.+.++|.-  .+|.+++=|   .+.+..|+      .|..+.|.|..  +...|++......|.+|.+
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE------hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE------HVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc------eeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            45788899964333444542  344443332   23444432      29999999831  2235666677789999998


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-cccCCCCCcEEEEecCCcC
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~  172 (291)
                      ...........     ....|.+.                            ..++.... ..|+|...-+.+.++. | 
T Consensus        90 ~~s~~e~~K~l-----~sQtcEi~----------------------------e~~pvLpQGCVWHPk~~iL~VLT~~-d-  134 (671)
T PF15390_consen   90 CPSTTERNKLL-----MSQTCEIR----------------------------EPFPVLPQGCVWHPKKAILTVLTAR-D-  134 (671)
T ss_pred             ccCccccccce-----eeeeeecc----------------------------CCcccCCCcccccCCCceEEEEecC-c-
Confidence            74322110000     00111000                            00111101 4599998766554543 3 


Q ss_pred             eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      .-.+++++......+..           ....+.+.+.+ |.+|   |++.+++.+..=.-++||-..
T Consensus       135 vSV~~sV~~d~srVkaD-----------i~~~G~IhCAC-WT~D---G~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  135 VSVLPSVHCDSSRVKAD-----------IKTSGLIHCAC-WTKD---GQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             eeEeeeeeeCCceEEEe-----------ccCCceEEEEE-ecCc---CCEEEEEeCCeEEEEEecCch
Confidence            33455655433222222           11356777776 9998   554555556666788998653

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.78  E-value=2  Score=35.69  Aligned_cols=39  Identities=10%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCC
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV   48 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~   48 (291)
                      +++.++.--.+.|.++.|+.+. .|+.-..||.++++|+.
T Consensus        71 ~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   71 KLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             CEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            4444444333789999998865 55566789999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.78  E-value=0.72  Score=38.57  Aligned_cols=81  Identities=10%  Similarity=0.069  Sum_probs=49.9

Q ss_pred             CceEEecCCccceeEEEEcCCCC-------EEEEecCCCeEEEEeCCC-Ce-EEEEEeeecC--CcceEEEEEeecCCCC
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKP-------ILFAGTTGGELRIWDTVQ-HR-TVSSSWVHSA--AHGIVSVATGPSIGLN   77 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~-------~l~s~~~dg~v~iwd~~~-~~-~~~~~~~~~~--~~~v~~~~~~~~~~~~   77 (291)
                      +.+...+-|.+ |+-+.+.|+..       .-+.|-.|..|.-||.+- ++ .+...+.|.-  .....|.+-..  + .
T Consensus       367 KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~--s-G  442 (644)
T KOG2395|consen  367 KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE--S-G  442 (644)
T ss_pred             eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecC--C-c
Confidence            34444554554 77777877542       224567788899999763 22 3333333321  12245555444  4 7


Q ss_pred             eEEEEeCCCeEEEEEC
Q 022870           78 KVISQGRDGTVKCWDI   93 (291)
Q Consensus        78 ~l~s~~~dg~i~iwd~   93 (291)
                      ++++||.+|.|++||-
T Consensus       443 ~IvvgS~~GdIRLYdr  458 (644)
T KOG2395|consen  443 YIVVGSLKGDIRLYDR  458 (644)
T ss_pred             eEEEeecCCcEEeehh
Confidence            9999999999999997

>PHA02790 Kelch-like protein; Provisional

Probab=94.72  E-value=2.4  Score=36.17  Aligned_cols=65  Identities=9%  Similarity=0.036  Sum_probs=32.9

Q ss_pred             CCCEEEEecCCC-----eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC--CeEEEEECCCCC
Q 022870           29 TKPILFAGTTGG-----ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--GTVKCWDIENGG   97 (291)
Q Consensus        29 ~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~   97 (291)
                      ++.+++.||.++     .+..||..+++-...-....... -.+++ .-  ++...+.||.+  .++..||..+++
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~-~~~~v-~~--~~~iYviGG~~~~~sve~ydp~~n~  342 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRL-YASGV-PA--NNKLYVVGGLPNPTSVERWFHGDAA  342 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhh-cceEE-EE--CCEEEEECCcCCCCceEEEECCCCe
Confidence            445667777643     56778877655333211111111 11222 22  55666677754  356777766543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.37  E-value=0.44  Score=35.63  Aligned_cols=68  Identities=18%  Similarity=0.248  Sum_probs=48.4

Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCCeEEEEE-------ee-----ecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870           27 HQTKPILFAGTTGGELRIWDTVQHRTVSSS-------WV-----HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        27 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~   94 (291)
                      ..++.+|++-+.+|.+++||+.+++.+..-       ..     ......|..+.+..  +|.-+++-+ +|..+.|+..
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~--~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS--NGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC--CCCEEEEEe-CCCEEEeccc
Confidence            346778999999999999999988764432       10     01224588888887  777776655 5788999887


Q ss_pred             CCC
Q 022870           95 NGG   97 (291)
Q Consensus        95 ~~~   97 (291)
                      -+.
T Consensus        96 L~~   98 (219)
T PF07569_consen   96 LGC   98 (219)
T ss_pred             cce
Confidence            654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.29  E-value=0.84  Score=38.81  Aligned_cols=76  Identities=9%  Similarity=0.112  Sum_probs=43.3

Q ss_pred             cceeEEEEcCC----CCEEEEecCCCeEEEEeCC-----CCeEEEEEeeecC-Ccce--EEEEEeecCCCCeEEEEeCCC
Q 022870           19 ASVTDVCFHQT----KPILFAGTTGGELRIWDTV-----QHRTVSSSWVHSA-AHGI--VSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus        19 ~~v~~l~~~~~----~~~l~s~~~dg~v~iwd~~-----~~~~~~~~~~~~~-~~~v--~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      +-|..+.|.|-    -..|++......|.||.+.     +++.+.+-..+-. +-||  ..+.|+|  ....|+.-....
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT~~d  134 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLTARD  134 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEecCc
Confidence            45899999983    3245555667889999875     2333332222111 0112  4678999  656666544443


Q ss_pred             eEEEEECCCC
Q 022870           87 TVKCWDIENG   96 (291)
Q Consensus        87 ~i~iwd~~~~   96 (291)
                      .=.++++...
T Consensus       135 vSV~~sV~~d  144 (671)
T PF15390_consen  135 VSVLPSVHCD  144 (671)
T ss_pred             eeEeeeeeeC
Confidence            3345666544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.29  E-value=4  Score=36.94  Aligned_cols=71  Identities=17%  Similarity=0.250  Sum_probs=45.2

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeeecC----------CcceEEEEEeecCCCCeEEEEeC----------CCeEE
Q 022870           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSA----------AHGIVSVATGPSIGLNKVISQGR----------DGTVK   89 (291)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~~~----------dg~i~   89 (291)
                      +..++.++.|+.+.-.|.++|+....+.....          ...-..+.-.|...++.++.|+.          +|.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            34788899999999999999998876542110          00001111122112356666643          68899


Q ss_pred             EEECCCCCCCC
Q 022870           90 CWDIENGGLSS  100 (291)
Q Consensus        90 iwd~~~~~~~~  100 (291)
                      -+|.++++...
T Consensus       340 A~Da~TGkl~W  350 (764)
T TIGR03074       340 AFDVNTGALVW  350 (764)
T ss_pred             EEECCCCcEee
Confidence            99999998765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK10115 protease 2; Provisional

Probab=94.22  E-value=3.9  Score=36.63  Aligned_cols=71  Identities=7%  Similarity=-0.074  Sum_probs=45.1

Q ss_pred             ceeEEEEcCCCCEEEEecC-----CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC------CeE
Q 022870           20 SVTDVCFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTV   88 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i   88 (291)
                      .+..+.++|+|++|+.+..     ...|++-|+.++..+...-  ...  -..++|.+  |++.|+-...+      ..|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~--~~~~~w~~--D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNV--EPSFVWAN--DSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCc--ceEEEEee--CCCEEEEEEecCCCCCCCEE
Confidence            4677889999998876532     2458888998775332211  111  14689999  87766544332      357


Q ss_pred             EEEECCCC
Q 022870           89 KCWDIENG   96 (291)
Q Consensus        89 ~iwd~~~~   96 (291)
                      ..+++.++
T Consensus       202 ~~h~lgt~  209 (686)
T PRK10115        202 WRHTIGTP  209 (686)
T ss_pred             EEEECCCC
Confidence            77777766

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.16  E-value=2.3  Score=33.62  Aligned_cols=72  Identities=19%  Similarity=0.213  Sum_probs=41.4

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      +-.+.+..+..+++|.+++++..-....-||.....-...-....  ..|.+|.|.|  ++.+.+. ...|.|+.=+
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~--~riq~~gf~~--~~~lw~~-~~Gg~~~~s~  213 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSS--RRIQSMGFSP--DGNLWML-ARGGQIQFSD  213 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SS--S-EEEEEE-T--TS-EEEE-ETTTEEEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCcc--ceehhceecC--CCCEEEE-eCCcEEEEcc
Confidence            344678888889999999988776667788854322221112222  5699999999  8666554 4888888777

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.15  E-value=1.6  Score=40.16  Aligned_cols=95  Identities=13%  Similarity=0.028  Sum_probs=59.3

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (291)
                      +.|+|.-....++ ...|+.|++.-+..... +..+.             .....++++ |+|.   |+ .++.|-.+|+
T Consensus       161 ~~wnP~vp~n~av-~l~dlsl~V~~~~~~~~~v~s~p-------------~t~~~Tav~-WSpr---GK-Ql~iG~nnGt  221 (1405)
T KOG3630|consen  161 NVWNPLVPLNSAV-DLSDLSLRVKSTKQLAQNVTSFP-------------VTNSQTAVL-WSPR---GK-QLFIGRNNGT  221 (1405)
T ss_pred             ccccCCccchhhh-hccccchhhhhhhhhhhhhcccC-------------cccceeeEE-eccc---cc-eeeEecCCCe
Confidence            4466655444443 44588888887654322 22222             345677786 9998   55 8999999999


Q ss_pred             EEEEEccCCCCceeeccc---c-ccceeEEEeecCCCeeEE
Q 022870          233 ILVWDIRNPGIPLTAMKV---H-LEPVLCLSIDESCNGGIS  269 (291)
Q Consensus       233 i~vwd~~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l~s  269 (291)
                      +.-|-..  .+....+..   . ...|.+|+|-....+|+.
T Consensus       222 ~vQy~P~--leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  222 EVQYEPS--LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             EEEeecc--cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            9988765  232222221   1 368999999666556554

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.14  E-value=4.4  Score=36.92  Aligned_cols=247  Identities=13%  Similarity=0.048  Sum_probs=121.4

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEe--CCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWD--TVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      .|.-.+|-.|..+|.++..||.+.-+.  ..++..-..-+.+-+..|+.=-.|+.  .+..-+-+..|.-..+|.-+..-
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~s--k~~t~vfa~sdrP~viY~~n~kL  662 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSS--KSRTAVFALSDRPTVIYSSNGKL  662 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEee--CCceEEEEeCCCCEEEEecCCcE
Confidence            344555555678999999999987664  44554333222233334566556665  33333333344555556544321


Q ss_pred             CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc-cccccCCCCCC---cccCCCCCcEEEEecCC---
Q 022870           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDSK---DDVPAEGPKYMAVAGEQ---  170 (291)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~g~~---  170 (291)
                      +.. |+ ..+ .....|.+.....+...+...++......++..+ ...+..+-+..   +++.+.. .++++.+.+   
T Consensus       663 v~s-pl-s~k-ev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~s-l~~~v~s~r~e~  738 (1096)
T KOG1897|consen  663 VYS-PL-SLK-EVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESS-LTFGVLSNRIES  738 (1096)
T ss_pred             EEe-cc-chH-HhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccc-eEEEEEeccccc
Confidence            111 00 011 0112344444444455555555555555444332 11111222211   6666532 222222110   


Q ss_pred             -------c---CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec----------CC
Q 022870          171 -------L---SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY----------ED  230 (291)
Q Consensus       171 -------d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~----------~d  230 (291)
                             .   ..++++|-++.+.+...+..        ..+.-..+.+.. |..+.  +. ++++|+          ..
T Consensus       739 ~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~--------~~E~~~Si~s~~-~~~d~--~t-~~vVGT~~v~Pde~ep~~  806 (1096)
T KOG1897|consen  739 SAEYYGEEYEVSFLRVLDQNTFEVLSSHEFE--------RNETALSIISCK-FTDDP--NT-YYVVGTGLVYPDENEPVN  806 (1096)
T ss_pred             chhhcCCcceEEEEEEecCCceeEEeecccc--------ccceeeeeeeee-ecCCC--ce-EEEEEEEeeccCCCCccc
Confidence                   1   23677777666554433310        011122334444 66552  33 677775          35


Q ss_pred             CcEEEEEccCCCCceeecccc--ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          231 GSILVWDIRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      |.|.+|.... .+.+.....+  .+.|.++.- -+|++||+  -...|++|++.+++.++
T Consensus       807 GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr  862 (1096)
T KOG1897|consen  807 GRIIVFEFEE-LNSLELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELR  862 (1096)
T ss_pred             ceEEEEEEec-CCceeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceeh
Confidence            8899998876 4444444322  344454432 34555554  46689999999886554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.02  E-value=2.1  Score=32.80  Aligned_cols=164  Identities=13%  Similarity=0.062  Sum_probs=92.0

Q ss_pred             eecCCcceEEEEEeecCCCCeEEEEeCCC--eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCcee
Q 022870           58 VHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC  135 (291)
Q Consensus        58 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (291)
                      .|.....-..+.|..  ++.++-+.+.-|  .|+.+|+.+++...  ...+.......-                     
T Consensus        40 pHd~~aFTQGL~~~~--~g~LyESTG~yG~S~l~~~d~~tg~~~~--~~~l~~~~FgEG---------------------   94 (264)
T PF05096_consen   40 PHDPTAFTQGLEFLD--DGTLYESTGLYGQSSLRKVDLETGKVLQ--SVPLPPRYFGEG---------------------   94 (264)
T ss_dssp             E--TT-EEEEEEEEE--TTEEEEEECSTTEEEEEEEETTTSSEEE--EEE-TTT--EEE---------------------
T ss_pred             CCCCcccCccEEecC--CCEEEEeCCCCCcEEEEEEECCCCcEEE--EEECCcccccee---------------------
Confidence            355545577888877  767777877766  79999999987543  112221111000                     


Q ss_pred             eecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecC
Q 022870          136 YEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (291)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  215 (291)
                                        ++..  ++.++..+ -.++...+||..+.+.+.++...           ..+  +.++ .. 
T Consensus        95 ------------------it~~--~d~l~qLT-Wk~~~~f~yd~~tl~~~~~~~y~-----------~EG--WGLt-~d-  138 (264)
T PF05096_consen   95 ------------------ITIL--GDKLYQLT-WKEGTGFVYDPNTLKKIGTFPYP-----------GEG--WGLT-SD-  138 (264)
T ss_dssp             ------------------EEEE--TTEEEEEE-SSSSEEEEEETTTTEEEEEEE-S-----------SS----EEE-EC-
T ss_pred             ------------------EEEE--CCEEEEEE-ecCCeEEEEccccceEEEEEecC-----------Ccc--eEEE-cC-
Confidence                              1111  23344333 45799999999999988888731           122  2332 22 


Q ss_pred             CCCCCceEEEeecCCCcEEEEEccCCCCceeecccc--c---cceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          216 SKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH--L---EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       216 ~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h--~---~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                          |+ .|+.......|+++|..+ .+....+...  .   ..++.+.|- +|...|=.=....|..-|..+|++...
T Consensus       139 ----g~-~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~  210 (264)
T PF05096_consen  139 ----GK-RLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGW  210 (264)
T ss_dssp             ----SS-CEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred             ----CC-EEEEECCccceEEECCcc-cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence                44 566666677999999887 5655555432  1   245666665 454444444556788888888877643

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.99  E-value=3.1  Score=34.63  Aligned_cols=32  Identities=19%  Similarity=0.460  Sum_probs=22.9

Q ss_pred             eEEEEEeecCCCCeEEEE-eCCC----eEEEEECCCCCC
Q 022870           65 IVSVATGPSIGLNKVISQ-GRDG----TVKCWDIENGGL   98 (291)
Q Consensus        65 v~~~~~~~~~~~~~l~s~-~~dg----~i~iwd~~~~~~   98 (291)
                      +....++|  ++++++-+ +..|    .|+++|+++++.
T Consensus       126 ~~~~~~Sp--dg~~la~~~s~~G~e~~~l~v~Dl~tg~~  162 (414)
T PF02897_consen  126 LGGFSVSP--DGKRLAYSLSDGGSEWYTLRVFDLETGKF  162 (414)
T ss_dssp             EEEEEETT--TSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred             eeeeeECC--CCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence            34667888  88888743 4444    599999998853

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=93.88  E-value=3.1  Score=34.12  Aligned_cols=190  Identities=14%  Similarity=0.052  Sum_probs=101.7

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecc
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV  119 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (291)
                      +.|.|.| ++.+.+..+.+-...+.|.++.|..  |-.+++|=-+-.-+.+-|+...+-.+ .+-.++...     ++  
T Consensus       406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~g--dv~yiVTfrqtDPlfviDlsNPenPk-vlGeLKIPG-----fS--  474 (603)
T COG4880         406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVG--DVLYIVTFRQTDPLFVIDLSNPENPK-VLGELKIPG-----FS--  474 (603)
T ss_pred             ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeC--ceEEEEEEeccCceEEEEcCCCCCCc-eeEEEecCC-----ch--
Confidence            3466666 4567777777765557799999988  76677777666678888988765322 000111000     00  


Q ss_pred             cCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeE--EEEeCCCcceeeEecccccCCCC
Q 022870          120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV--EIWDLNTAERCTRLHQNSCGGSP  197 (291)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i--~~wd~~~~~~~~~~~~~~~~~~~  197 (291)
                                                        --++|-|+..++-.|..+|.+  .++|+......+....-.+.   
T Consensus       475 ----------------------------------~YLHpigen~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~---  517 (603)
T COG4880         475 ----------------------------------EYLHPIGENRLLGVGAYQGGVKISLFDISDLAAPKEVSNYTLS---  517 (603)
T ss_pred             ----------------------------------hhccccCCCcEEEeecccCCceEEEEeccCCCCchhhhheehh---
Confidence                                              115677777777677777765  56887654332221100000   


Q ss_pred             CCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEE
Q 022870          198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIV  277 (291)
Q Consensus       198 ~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~  277 (291)
                      .--.+.-..-.+.. |.|.   -..+++-+...|.  ++.++. +..+..-..|...+...-|..|-.+++.++   .+.
T Consensus       518 ~~wspvf~dhHAFl-~d~~---~~ifFlPay~~gy--if~ied-g~kl~k~~e~k~na~RA~fi~dylY~vg~~---ev~  587 (603)
T COG4880         518 NAWSPVFYDHHAFL-YDPE---AEIFFLPAYLGGY--IFFIED-GSKLRKRAERKLNADRAFFIKDYLYLVGGN---EVW  587 (603)
T ss_pred             hhcchhhhccceee-cCCc---ccEEEecccCccE--EEEEec-CceeeehhhhcccceeeEEecceEEEeccc---eeE
Confidence            00000000001111 3332   2225556666665  555666 444445456777777777888855544443   466


Q ss_pred             EEEcCCCcee
Q 022870          278 LYNLDHSTVS  287 (291)
Q Consensus       278 vw~~~~~~~~  287 (291)
                      +.|-++-+++
T Consensus       588 ~ldenswe~V  597 (603)
T COG4880         588 KLDENSWEVV  597 (603)
T ss_pred             EeccchHhhh
Confidence            6665554443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.70  E-value=0.0088  Score=48.72  Aligned_cols=145  Identities=14%  Similarity=0.184  Sum_probs=91.2

Q ss_pred             EEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcccc
Q 022870           66 VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD  145 (291)
Q Consensus        66 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (291)
                      ....|.+  .+.-++.++.+..|..||-....... ...+...    ..                               
T Consensus        38 i~~~w~~--e~~nlavaca~tiv~~YD~agq~~le-~n~tg~a----ld-------------------------------   79 (615)
T KOG2247|consen   38 IIHRWRP--EGHNLAVACANTIVIYYDKAGQVILE-LNPTGKA----LD-------------------------------   79 (615)
T ss_pred             ceeeEec--CCCceehhhhhhHHHhhhhhcceecc-cCCchhH----hh-------------------------------
Confidence            4556777  66668888888899999866443211 0001000    00                               


Q ss_pred             ccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEE
Q 022870          146 TDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (291)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (291)
                              ++|..+++.+++ .....+.+.+||+.+.. .++++..      +..  ....   . .|++..+    .++
T Consensus        80 --------m~wDkegdvlav-lAek~~piylwd~n~ey-tqqLE~g------g~~--s~sl---l-~wsKg~~----el~  133 (615)
T KOG2247|consen   80 --------MAWDKEGDVLAV-LAEKTGPIYLWDVNSEY-TQQLESG------GTS--SKSL---L-AWSKGTP----ELV  133 (615)
T ss_pred             --------hhhccccchhhh-hhhcCCCeeechhhhhh-HHHHhcc------Ccc--hHHH---H-hhccCCc----ccc
Confidence                    557777766555 45557899999998653 2233310      110  1111   2 3887643    788


Q ss_pred             eecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeE
Q 022870          226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKI  276 (291)
Q Consensus       226 ~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i  276 (291)
                      .|...|.+.|++..+ .+.+.....|...+++++|.+.+. .+.++.|..+
T Consensus       134 ig~~~gn~viynhgt-sR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L  182 (615)
T KOG2247|consen  134 IGNNAGNIVIYNHGT-SRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTL  182 (615)
T ss_pred             ccccccceEEEeccc-hhhhhhhcccccceeEEEecccce-eeecCcHHHH
Confidence            899999999999988 565555656999999999988765 5666666543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.38  E-value=4.6  Score=37.77  Aligned_cols=72  Identities=18%  Similarity=0.399  Sum_probs=42.1

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCc--ceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH--GIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~   95 (291)
                      .....++|+|.-.++|.|..+|.|+++-...-+...   .|....  ++..+.+-.  ..........+..+.+|....
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~---~~~~~~~~~~~~~~~~~--~~s~~~~l~~~~~~~~~~~~~  109 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVG---LHPKQNQINVTRIELLV--GISRNLVLSDDDSLHLWSIKI  109 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceEEEe---ccccccchhhhheeeee--cccccceeecccceeeecccc
Confidence            455778999988899999999999999854322222   222111  133333333  223344445556666676553

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.73  E-value=6.9  Score=34.83  Aligned_cols=76  Identities=4%  Similarity=-0.043  Sum_probs=48.6

Q ss_pred             cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC-CC-ceeeccccccceeEEEee-----cCCC-eeEEecCCC
Q 022870          203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GI-PLTAMKVHLEPVLCLSID-----ESCN-GGISGGADQ  274 (291)
Q Consensus       203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~~-~~~~~~~h~~~v~~~~~~-----~~~~-~l~s~s~dg  274 (291)
                      ....+++++ ++..  +..++||+++....|.||-.... .+ ....-..|...|-+|+|-     +.|. .|++++-.|
T Consensus       162 v~~SaWGLd-Ih~~--~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G  238 (717)
T PF08728_consen  162 VGASAWGLD-IHDY--KKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISG  238 (717)
T ss_pred             cCCceeEEE-EEec--CcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccC
Confidence            344677776 6611  12228888888888888866531 11 111112356788899992     3343 788899999


Q ss_pred             eEEEEEc
Q 022870          275 KIVLYNL  281 (291)
Q Consensus       275 ~i~vw~~  281 (291)
                      .+.+|++
T Consensus       239 ~v~~~~I  245 (717)
T PF08728_consen  239 EVWTFKI  245 (717)
T ss_pred             cEEEEEE
Confidence            9999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.70  E-value=5.1  Score=33.27  Aligned_cols=141  Identities=9%  Similarity=-0.086  Sum_probs=74.8

Q ss_pred             CCCeEEEEeCCC--CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEE
Q 022870           38 TGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK  115 (291)
Q Consensus        38 ~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
                      ..|.+.=|-+..  ....-++..... ++|.++.|++  |...++.--.|.+|.+.+....+...+...+.+........
T Consensus        41 rSggatgvvvkgpndDVpiSfdm~d~-G~I~SIkFSl--DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlG  117 (657)
T KOG2377|consen   41 RSGGATGVVVKGPNDDVPISFDMDDK-GEIKSIKFSL--DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILG  117 (657)
T ss_pred             ecCCeeEEEEeCCCCCCCceeeecCC-CceeEEEecc--CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEE
Confidence            334455555432  233334443322 5699999999  98888899999999999985544332222233333333333


Q ss_pred             eecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCc
Q 022870          116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTA  182 (291)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~  182 (291)
                      |....+ ...+.........+.+.+.....+....+..    ..|.++.+-.+++++-..+.+.=+-++++
T Consensus       118 F~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  118 FCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            333333 3334444444555544443322222222222    56778777666666534444444444443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.66  E-value=2.5  Score=35.55  Aligned_cols=58  Identities=12%  Similarity=0.131  Sum_probs=43.8

Q ss_pred             EEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      ++++|+..|.|++||.-. -+.-..+.+-...|..+....+|.++++.+ ...+.+-|+.
T Consensus       575 yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         575 YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             eEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence            899999999999999653 333344666677899999999999887665 4466666654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.54  E-value=0.79  Score=23.54  Aligned_cols=33  Identities=12%  Similarity=0.217  Sum_probs=24.6

Q ss_pred             CCCCEEEEe-cCCCeEEEEeCCCCeEEEEEeeec
Q 022870           28 QTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHS   60 (291)
Q Consensus        28 ~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~   60 (291)
                      |++++|+++ -.+++|.++|..+++.+..+....
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~   34 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG   34 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence            466666554 457899999999888888877643

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.31  E-value=5.4  Score=32.60  Aligned_cols=63  Identities=17%  Similarity=0.253  Sum_probs=44.1

Q ss_pred             CCceEEEeecCCCcEEEEEccCC--C----CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          219 QGFVNVLAGYEDGSILVWDIRNP--G----IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       219 ~g~~~l~~g~~dg~i~vwd~~~~--~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      .|..+++....+|.+..|-+...  +    ++++.|.. ...+-.|..+....+|..+-+|.-|.-|+.+
T Consensus       169 ~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Ae  237 (381)
T PF02333_consen  169 TGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAE  237 (381)
T ss_dssp             T--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred             CCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecC
Confidence            36668888889999998888531  2    24666665 4478889998888889888888777777765

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.13  E-value=5.2  Score=37.69  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=31.3

Q ss_pred             ccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      .+.++|..|+.+.....+.+-+..|+|++|++..
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            5677999999999999999999999999999987

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.48  E-value=9.7  Score=33.81  Aligned_cols=52  Identities=13%  Similarity=0.243  Sum_probs=39.0

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      -.|+|+++ +|+.+..+.-...  ++..+.|+.  + ..|+....||++++|++-...
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~--~lI~mgWs~--~-eeLI~v~k~g~v~Vy~~~ge~  115 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHG--ELIGMGWSD--D-EELICVQKDGTVHVYGLLGEF  115 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCC--CeeeecccC--C-ceEEEEeccceEEEeecchhh
Confidence            35888885 4666665443332  389999998  6 788889999999999987543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.25  E-value=4.9  Score=35.23  Aligned_cols=99  Identities=15%  Similarity=0.217  Sum_probs=59.4

Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc-----CC
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR-----NP  241 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~-----~~  241 (291)
                      ..+....+.|||.+.+.....-.         +  ...+.+..+. |.... +|+ .+++.+-.+.|.+|.-.     +.
T Consensus        46 V~~~~~~LtIWD~~~~~lE~~~~---------f--~~~~~I~dLD-Wtst~-d~q-siLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   46 VDSSRSELTIWDTRSGVLEYEES---------F--SEDDPIRDLD-WTSTP-DGQ-SILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             EECCCCEEEEEEcCCcEEEEeee---------e--cCCCceeece-eeecC-CCC-EEEEEEcCcEEEEEEccchhhhcC
Confidence            34445789999999887333222         1  1245566666 66543 366 56666667788887542     10


Q ss_pred             C---Cceee--ccccc-cceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          242 G---IPLTA--MKVHL-EPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       242 ~---~~~~~--~~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      .   .++..  +..|. .+|.+..|-++|.+++.+  ++.+.|++-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            1   12222  23343 589999999999855443  457888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.19  E-value=0.61  Score=38.31  Aligned_cols=85  Identities=15%  Similarity=0.154  Sum_probs=51.2

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEE-EE-eeecCC--cceE-EEEEeecCCCCeEEEEe
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS-SS-WVHSAA--HGIV-SVATGPSIGLNKVISQG   83 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~-~~~~~~--~~v~-~~~~~~~~~~~~l~s~~   83 (291)
                      +.+..+..-.++|..+-..|||+.++.-+. .++.++++.+..... .+ ....+.  ..|+ ++....  .|.-++.++
T Consensus       211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~--Gg~SLLv~~  287 (733)
T COG4590         211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS--GGFSLLVVH  287 (733)
T ss_pred             hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh--CceeEEEEc
Confidence            334446666778889999999998876655 688899887543211 11 111110  1122 222223  556788899


Q ss_pred             CCCeEEEE-ECCCC
Q 022870           84 RDGTVKCW-DIENG   96 (291)
Q Consensus        84 ~dg~i~iw-d~~~~   96 (291)
                      .||-|.-| |.+..
T Consensus       288 ~dG~vsQWFdvr~~  301 (733)
T COG4590         288 EDGLVSQWFDVRRD  301 (733)
T ss_pred             CCCceeeeeeeecC
Confidence            99998887 55543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.92  E-value=6.1  Score=30.52  Aligned_cols=241  Identities=10%  Similarity=0.019  Sum_probs=122.1

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~   99 (291)
                      .-..++-.|||..-+++...+.|---|..+|+....--+..  ..-..|..-|  ||...++=+.. -|.-.|-++.+..
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G--a~Phgiv~gp--dg~~Witd~~~-aI~R~dpkt~evt  137 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG--ASPHGIVVGP--DGSAWITDTGL-AIGRLDPKTLEVT  137 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCC--CCCceEEECC--CCCeeEecCcc-eeEEecCcccceE
Confidence            34667778888777888777777777888887654432222  2256777888  77766664433 4555565554432


Q ss_pred             CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-----cccCCCCCcEEEEecCCcCeE
Q 022870          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAVAGEQLSEV  174 (291)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~d~~i  174 (291)
                      .-++ ..+..........+..........  ..+..-.++..+.....+..-+.     ++..|+|+-.+  +.-.+..|
T Consensus       138 ~f~l-p~~~a~~nlet~vfD~~G~lWFt~--q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwy--aslagnai  212 (353)
T COG4257         138 RFPL-PLEHADANLETAVFDPWGNLWFTG--QIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWY--ASLAGNAI  212 (353)
T ss_pred             Eeec-ccccCCCcccceeeCCCccEEEee--ccccceecCcccCceeeeccCCCCCCcceEECCCCcEEE--Eeccccce
Confidence            2111 111111111111111111111111  11111133333333333322222     88999998666  33345678


Q ss_pred             EEEeCCCcceeeEecccccCCCCC-CCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc
Q 022870          175 EIWDLNTAERCTRLHQNSCGGSPN-FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE  253 (291)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~  253 (291)
                      -..|..++.. ..+....     . +.. .+..      |+..  .|+ .-++-...+.+..+|-.+..-....|.+...
T Consensus       213 aridp~~~~a-ev~p~P~-----~~~~g-sRri------wsdp--ig~-~wittwg~g~l~rfdPs~~sW~eypLPgs~a  276 (353)
T COG4257         213 ARIDPFAGHA-EVVPQPN-----ALKAG-SRRI------WSDP--IGR-AWITTWGTGSLHRFDPSVTSWIEYPLPGSKA  276 (353)
T ss_pred             EEcccccCCc-ceecCCC-----ccccc-cccc------ccCc--cCc-EEEeccCCceeeEeCcccccceeeeCCCCCC
Confidence            8888777632 2222100     1 111 1111      3211  254 5666667788888887763333344555555


Q ss_pred             ceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      .-.++..+..++.-.+=-.-|.|.-+|-++.++
T Consensus       277 rpys~rVD~~grVW~sea~agai~rfdpeta~f  309 (353)
T COG4257         277 RPYSMRVDRHGRVWLSEADAGAIGRFDPETARF  309 (353)
T ss_pred             CcceeeeccCCcEEeeccccCceeecCcccceE
Confidence            666777777766555444456666666655443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=90.85  E-value=8.7  Score=32.17  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=25.3

Q ss_pred             cceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          253 EPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       253 ~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      ..|.++..++..+.|++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3499999999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.68  E-value=3.8  Score=27.74  Aligned_cols=73  Identities=22%  Similarity=0.313  Sum_probs=49.5

Q ss_pred             eEEEEcCCCCEEEEecCCCeEEEEeCCCC--------eEEEEEeeecCCcceEEEEEee---cCCCCeEEEEeCCCeEEE
Q 022870           22 TDVCFHQTKPILFAGTTGGELRIWDTVQH--------RTVSSSWVHSAAHGIVSVATGP---SIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~s~~~dg~i~i   90 (291)
                      ..-.|......|+.++.-|.|.|++....        ..+..+...   ..|++++-.+   ..+.+.|+.|+.. .|..
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin---~~italaaG~l~~~~~~D~LliGt~t-~lla   77 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN---QEITALAAGRLKPDDGRDCLLIGTQT-SLLA   77 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC---CceEEEEEEecCCCCCcCEEEEeccc-eEEE
Confidence            44567776678888889999999987633        234445443   3378876544   2244577777764 7889


Q ss_pred             EECCCCCC
Q 022870           91 WDIENGGL   98 (291)
Q Consensus        91 wd~~~~~~   98 (291)
                      ||+..+.-
T Consensus        78 YDV~~N~d   85 (136)
T PF14781_consen   78 YDVENNSD   85 (136)
T ss_pred             EEcccCch
Confidence            99998754

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.55  E-value=9.6  Score=32.15  Aligned_cols=61  Identities=11%  Similarity=0.101  Sum_probs=39.6

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE--EEEEe---eecCCcceEEEEEee
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSW---VHSAAHGIVSVATGP   72 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~---~~~~~~~v~~~~~~~   72 (291)
                      .++...-..-+.|+|.|+|++|++--..|.|++++..++..  +..+.   ..........|+++|
T Consensus        23 ~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P   88 (454)
T TIGR03606        23 KVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP   88 (454)
T ss_pred             EEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence            33443445678999999998777765569999998654432  21121   111235689999998

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.18  E-value=0.97  Score=39.24  Aligned_cols=39  Identities=15%  Similarity=0.289  Sum_probs=28.8

Q ss_pred             cceeEEEEcC----CCCEEEEecCCCeEEEEeCCCCeEEEEEe
Q 022870           19 ASVTDVCFHQ----TKPILFAGTTGGELRIWDTVQHRTVSSSW   57 (291)
Q Consensus        19 ~~v~~l~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~   57 (291)
                      ..+..++.+.    +..++++-+.|+++|+||+.+++++.+..
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence            3445555555    66799999999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=89.98  E-value=7.4  Score=29.96  Aligned_cols=108  Identities=8%  Similarity=0.012  Sum_probs=57.5

Q ss_pred             cccCCCCCcEEEEec-CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870          154 DDVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (291)
                      .++++++..+.++.. .....++++..  +........       +.      ....-. |.++   +. ..+....+..
T Consensus        29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~-------g~------~l~~PS-~d~~---g~-~W~v~~~~~~   88 (253)
T PF10647_consen   29 PAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLT-------GG------SLTRPS-WDPD---GW-VWTVDDGSGG   88 (253)
T ss_pred             eEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeecc-------CC------cccccc-ccCC---CC-EEEEEcCCCc
Confidence            778999987776651 21234555543  333332211       11      222233 8877   43 4445455556


Q ss_pred             EEEEE-ccCCCCceeecccc--ccceeEEEeecCCCeeEEec---CCCeEEEEEc
Q 022870          233 ILVWD-IRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGG---ADQKIVLYNL  281 (291)
Q Consensus       233 i~vwd-~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s---~dg~i~vw~~  281 (291)
                      .+++. ..+.......+...  .+.|+.+.++|||..++...   .++.|.+=-+
T Consensus        89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen   89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence            66663 33312111122211  12899999999999987665   3567766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.40  E-value=1.8  Score=22.11  Aligned_cols=39  Identities=10%  Similarity=0.083  Sum_probs=25.0

Q ss_pred             CceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEe
Q 022870          220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI  260 (291)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~  260 (291)
                      ++..+++...++.|.++|..+ .+.+..+.. ......++|
T Consensus         3 ~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         3 GTKLYVTNSGSNTVSVIDTAT-NKVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCEEEEEeCCCCEEEEEECCC-CeEEEEEEC-CCCCceEEe
Confidence            443555566789999999987 676666654 233344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.79  E-value=5.6  Score=26.96  Aligned_cols=113  Identities=19%  Similarity=0.155  Sum_probs=63.4

Q ss_pred             cCCCCCcEEEEecCCcCeEEEEeCCCcc--------eeeEecccccCCCCCCCCCcceeeeeE--EEecCCCCCCceEEE
Q 022870          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAE--------RCTRLHQNSCGGSPNFSSKGRGMCMAV--QAYLPSKSQGFVNVL  225 (291)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~~wd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~g~~~l~  225 (291)
                      |....+.+.+++  .-|.|.|++.....        .+..+.             ....+.++  ..|.|+.  ++-.|+
T Consensus         6 fDG~~pcL~~aT--~~gKV~IH~ph~~~~~~~~~~~~i~~LN-------------in~~italaaG~l~~~~--~~D~Ll   68 (136)
T PF14781_consen    6 FDGVHPCLACAT--TGGKVFIHNPHERGQRTGRQDSDISFLN-------------INQEITALAAGRLKPDD--GRDCLL   68 (136)
T ss_pred             eCCCceeEEEEe--cCCEEEEECCCccccccccccCceeEEE-------------CCCceEEEEEEecCCCC--CcCEEE
Confidence            445555555443  35899999876443        233333             12223333  2366642  222677


Q ss_pred             eecCCCcEEEEEccCCCCceeeccccccceeEEEe----ecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI----DESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       226 ~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~----~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .|+.. .|..||+.+ ..-+.. +.-.+.|+++.+    .....+++.| .+..|.=||.+..+..=+
T Consensus        69 iGt~t-~llaYDV~~-N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   69 IGTQT-SLLAYDVEN-NSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             Eeccc-eEEEEEccc-Cchhhh-hhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence            77654 799999987 332222 222466788877    2234444444 477788888777665533

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.60  E-value=10  Score=29.82  Aligned_cols=80  Identities=20%  Similarity=0.305  Sum_probs=49.0

Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC---CCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS---KSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      .|..-|.|-+||+. ++.++.+...      +.    -...+.++ ..|.   .-.|. +|+---.||+|..||..+ ++
T Consensus       217 ~G~G~G~VdvFd~~-G~l~~r~as~------g~----LNaPWG~a-~APa~FG~~sg~-lLVGNFGDG~InaFD~~s-G~  282 (336)
T TIGR03118       217 AGAGLGYVNVFTLN-GQLLRRVASS------GR----LNAPWGLA-IAPESFGSLSGA-LLVGNFGDGTINAYDPQS-GA  282 (336)
T ss_pred             cCCCcceEEEEcCC-CcEEEEeccC------Cc----ccCCceee-eChhhhCCCCCC-eEEeecCCceeEEecCCC-Cc
Confidence            45556899999986 5677777531      22    11223332 3331   00143 666667799999999988 77


Q ss_pred             ceeeccccc------cceeEEEe
Q 022870          244 PLTAMKVHL------EPVLCLSI  260 (291)
Q Consensus       244 ~~~~~~~h~------~~v~~~~~  260 (291)
                      .+..+....      .-++.|+|
T Consensus       283 ~~g~L~~~~G~pi~i~GLWgL~f  305 (336)
T TIGR03118       283 QLGQLLDPDNHPVKVDGLWSLTF  305 (336)
T ss_pred             eeeeecCCCCCeEEecCeEEeee
Confidence            666666433      24678888

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA03098 kelch-like protein; Provisional

Probab=88.45  E-value=16  Score=31.75  Aligned_cols=66  Identities=12%  Similarity=0.112  Sum_probs=32.7

Q ss_pred             CCCEEEEecCC-----CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC------CeEEEEECCCCC
Q 022870           29 TKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIENGG   97 (291)
Q Consensus        29 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~   97 (291)
                      ++.+.+.||.+     ..+..||..+.+-...-..... ..-.+++..   ++..++.||.+      ..+..||..+.+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-r~~~~~~~~---~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-RYNPCVVNV---NNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-CccceEEEE---CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            45566777765     3467788766543221111110 001122222   44666666632      357788887765


Q ss_pred             C
Q 022870           98 L   98 (291)
Q Consensus        98 ~   98 (291)
                      .
T Consensus       418 W  418 (534)
T PHA03098        418 W  418 (534)
T ss_pred             e
Confidence            4

>smart00564 PQQ beta-propeller repeat

Probab=88.44  E-value=1.8  Score=20.77  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=20.5

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEE
Q 022870           32 ILFAGTTGGELRIWDTVQHRTVSS   55 (291)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~   55 (291)
                      .++.++.+|.+...|.++|+.+..
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            678888999999999998887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=87.78  E-value=11  Score=29.21  Aligned_cols=59  Identities=14%  Similarity=0.071  Sum_probs=39.4

Q ss_pred             CEEEEecCCCeEEEEeCCCC-----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870           31 PILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~   98 (291)
                      ..|+.+ ...+|.+|.....     +..+.+...   +.+.+++|.+    +.++.|..+ ...+.|+.++..
T Consensus       106 ~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp---~~~~~i~~~~----~~i~v~~~~-~f~~idl~~~~~  169 (275)
T PF00780_consen  106 RRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP---DPPSSIAFLG----NKICVGTSK-GFYLIDLNTGSP  169 (275)
T ss_pred             eEEEEE-ECCEEEEEEEECCcccccceeEEEEcC---CCcEEEEEeC----CEEEEEeCC-ceEEEecCCCCc
Confidence            344444 4458998887653     344555444   5589999987    677777755 478899987654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.38  E-value=17  Score=30.99  Aligned_cols=80  Identities=11%  Similarity=0.040  Sum_probs=51.5

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEe---------CCCCeEEEEEe---------eecCCcceEEEEEeecC--CCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWD---------TVQHRTVSSSW---------VHSAAHGIVSVATGPSI--GLN   77 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd---------~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~--~~~   77 (291)
                      .-.|..+..++.|..++-.|.+|.+.++=         +++|+..-..+         .....-.+...+|+|..  | .
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D-~  181 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILD-P  181 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCC-c
Confidence            34678889999999999999999765542         12343221111         11111346788899843  2 5


Q ss_pred             eEEEEeCCCeEEEEECCCCCC
Q 022870           78 KVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        78 ~l~s~~~dg~i~iwd~~~~~~   98 (291)
                      .|+.-+.|..+++||+.....
T Consensus       182 hL~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             eEEEEecCcEEEEEecCCcch
Confidence            666777788999999886643

>KOG3611 consensus Semaphorins [Signal transduction mechanisms]

Probab=87.33  E-value=14  Score=33.44  Aligned_cols=79  Identities=20%  Similarity=0.270  Sum_probs=53.9

Q ss_pred             CceEEecCCccceeEEEEc----CCCC--EEEEecCCCeEE-EEeCCCC-----eEEEEEeeecCCcceEEEEEeecCCC
Q 022870            9 DPVAVLRGHRASVTDVCFH----QTKP--ILFAGTTGGELR-IWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGL   76 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~----~~~~--~l~s~~~dg~v~-iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~   76 (291)
                      +|+....+ ....+.++..    .++.  .|+.|+.+|+|. +-.+.+.     ..+.+++.-...++|..|..++  ..
T Consensus       399 ~P~l~~~~-~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~--~~  475 (737)
T KOG3611|consen  399 RPLLVKTG-DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSS--KR  475 (737)
T ss_pred             CceEEecc-cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecc--cC
Confidence            56666665 6677777776    3444  567899999863 3333331     1455666555557799999999  66


Q ss_pred             CeEEEEeCCCeEEE
Q 022870           77 NKVISQGRDGTVKC   90 (291)
Q Consensus        77 ~~l~s~~~dg~i~i   90 (291)
                      ..|++|+.+|.+++
T Consensus       476 ~~LyVgs~~gV~qv  489 (737)
T KOG3611|consen  476 GSLYVGSRSGVVQV  489 (737)
T ss_pred             CeEEEEccCcEEEe
Confidence            78999999886654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=86.95  E-value=21  Score=31.42  Aligned_cols=65  Identities=15%  Similarity=0.182  Sum_probs=39.2

Q ss_pred             CCCEEEEecCC------CeEEEEeCCCCeEEE--EEeeecCCcceEEEEEeecCCCCeEEEEeCCC-----eEEEEECCC
Q 022870           29 TKPILFAGTTG------GELRIWDTVQHRTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----TVKCWDIEN   95 (291)
Q Consensus        29 ~~~~l~s~~~d------g~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~   95 (291)
                      ++...++||.|      .++..||..+.+-..  .+.....   =.+++..   +|...+.||.||     ++-.||.++
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~---~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~  405 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS---DFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVT  405 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc---cceeEEE---CCEEEEEeccccccccccEEEecCCC
Confidence            34577889888      357778877655322  1221211   1222222   557788899886     477899888


Q ss_pred             CCCC
Q 022870           96 GGLS   99 (291)
Q Consensus        96 ~~~~   99 (291)
                      .+..
T Consensus       406 ~~W~  409 (571)
T KOG4441|consen  406 NKWT  409 (571)
T ss_pred             Cccc
Confidence            7653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.88  E-value=2.7  Score=31.06  Aligned_cols=50  Identities=14%  Similarity=0.132  Sum_probs=37.5

Q ss_pred             EEEeecCCCcEEEEEccC-CCCceeeccccccceeEEEeecCCCeeEEecCC
Q 022870          223 NVLAGYEDGSILVWDIRN-PGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD  273 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  273 (291)
                      .|+.+...+.|.+|++.+ ..+++..+.. -+.|..+.++..|.+|+|-=.+
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence            555557778899999983 2445556654 5889999999999999986543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.81  E-value=8.8  Score=27.53  Aligned_cols=33  Identities=21%  Similarity=0.213  Sum_probs=25.1

Q ss_pred             ceEEEEEeecC----CCCeEEEEeCCCeEEEEECCCC
Q 022870           64 GIVSVATGPSI----GLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        64 ~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      .|.+++|+|.-    .+-+|++...++.|.+|.....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            58999999921    1236788899999999987754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.06  E-value=0.13  Score=42.32  Aligned_cols=71  Identities=8%  Similarity=0.034  Sum_probs=49.7

Q ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCC
Q 022870           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGG   97 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~   97 (291)
                      -....|-+.+..++.++.+..|..|| +.++........   .....++|.-  +++.++ .+-..+.+.+||+.+..
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n~t---g~aldm~wDk--egdvlavlAek~~piylwd~n~ey  108 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELNPT---GKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEY  108 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhh-hhcceecccCCc---hhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhh
Confidence            34456777766788888899999999 445554443322   3367888887  666554 56678899999998754

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=86.04  E-value=0.97  Score=40.49  Aligned_cols=70  Identities=23%  Similarity=0.256  Sum_probs=44.6

Q ss_pred             ceeEEEEcC---CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEE-----------EeecCCCCeEEEEeCC
Q 022870           20 SVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA-----------TGPSIGLNKVISQGRD   85 (291)
Q Consensus        20 ~v~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~~~l~s~~~d   85 (291)
                      .+.-+.|.|   +..++..+-.++++++-+.+.... ..+..|...  +..++           .+|  ||..+++++.|
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~--~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~d  256 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQR--VTDMAFFAEGVLKLASLSP--DGTVFAWAISD  256 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCC--cccHHHHhhchhhheeeCC--CCcEEEEeecC
Confidence            334455554   556777788888888877654321 233345422  33333           577  88888888888


Q ss_pred             CeEEEEECC
Q 022870           86 GTVKCWDIE   94 (291)
Q Consensus        86 g~i~iwd~~   94 (291)
                      |.++.|.+-
T Consensus       257 G~v~f~Qiy  265 (1283)
T KOG1916|consen  257 GSVGFYQIY  265 (1283)
T ss_pred             Cccceeeee
Confidence            888888754

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.03  E-value=12  Score=27.80  Aligned_cols=59  Identities=10%  Similarity=0.219  Sum_probs=40.5

Q ss_pred             EEEEecCCCeEEEEeCCC--CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC------eEEEE-ECCC
Q 022870           32 ILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG------TVKCW-DIEN   95 (291)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~i~iw-d~~~   95 (291)
                      .|+.+...+.|.+|++.+  .+.+..+..-   +.|..+.++.  .|++|+|--.+.      .+|+| |++.
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~--~GDYlvTlE~k~~~~~~~fvR~Y~NWr~   97 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSE--AGDYLVTLEEKNKRSPVDFVRAYFNWRS   97 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEecc--ccceEEEEEeecCCccceEEEEEEEhhh
Confidence            444445667899999883  3455556544   4599999999  899999865432      56665 4443

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.76  E-value=19  Score=33.09  Aligned_cols=71  Identities=14%  Similarity=0.176  Sum_probs=44.1

Q ss_pred             EEcCCCCEEEEecCCCeEEEEeCCCCeE---EEE------EeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870           25 CFHQTKPILFAGTTGGELRIWDTVQHRT---VSS------SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        25 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~   95 (291)
                      ++..-|+.++.|+.||.+.+|.+.....   ...      +..+-...+|..+...+  .-..++. -.|+.|.++++.+
T Consensus        21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~--~~~~ll~-l~dsqi~~~~l~~   97 (877)
T KOG2063|consen   21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCA--SLELLLI-LSDSQIAVHKLPE   97 (877)
T ss_pred             HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcc--hhcchhe-ecCCcceeeecCc
Confidence            3444677999999999999999865421   111      11111225577777777  3233333 4467788888876


Q ss_pred             CCC
Q 022870           96 GGL   98 (291)
Q Consensus        96 ~~~   98 (291)
                      .+.
T Consensus        98 ~~~  100 (877)
T KOG2063|consen   98 LEP  100 (877)
T ss_pred             ccc
Confidence            654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.65  E-value=26  Score=31.34  Aligned_cols=68  Identities=9%  Similarity=0.069  Sum_probs=40.5

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEE--E--eeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--S--WVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      ++.++.....++-.+.|+.+. .|+.-..||++.+|++- |+.+..  +  +...  ..|..+.+..  +|-.+++.+
T Consensus        75 lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~--~~I~ec~~f~--~GVavlt~~  146 (829)
T KOG2280|consen   75 LLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQM--SDIVECRFFH--NGVAVLTVS  146 (829)
T ss_pred             chHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhccccccccccc--CceeEEEEec--CceEEEecC
Confidence            333333334588899999877 45566899999999975 333333  1  2222  2366676666  544444433

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.59  E-value=4.8  Score=33.40  Aligned_cols=87  Identities=9%  Similarity=0.179  Sum_probs=55.4

Q ss_pred             CCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE--EEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      |-|.-++..-...+++|.++.|++|.+.||.--.|.+|.+++....+..  ...+.......|....|+.  . ..++-.
T Consensus        53 pndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s-~e~A~i  129 (657)
T KOG2377|consen   53 PNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--S-TEIAFI  129 (657)
T ss_pred             CCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--C-eeEEEE
Confidence            3333334333346779999999999999999999999999997432221  1111112224488999987  4 556655


Q ss_pred             eCCCeEEEEECCC
Q 022870           83 GRDGTVKCWDIEN   95 (291)
Q Consensus        83 ~~dg~i~iwd~~~   95 (291)
                      ...| +-+|....
T Consensus       130 ~~~G-~e~y~v~p  141 (657)
T KOG2377|consen  130 TDQG-IEFYQVLP  141 (657)
T ss_pred             ecCC-eEEEEEch
Confidence            5544 56665543

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=85.27  E-value=2.6  Score=19.51  Aligned_cols=26  Identities=8%  Similarity=0.125  Sum_probs=20.5

Q ss_pred             cceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          253 EPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       253 ~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      ..|.+++..+.  +++.+.+-+.+|+|.
T Consensus         2 E~i~aia~g~~--~vavaTS~~~lRifs   27 (27)
T PF12341_consen    2 EEIEAIAAGDS--WVAVATSAGYLRIFS   27 (27)
T ss_pred             ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence            35778887777  888888889999874

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=84.82  E-value=6.9  Score=32.55  Aligned_cols=59  Identities=14%  Similarity=0.133  Sum_probs=42.6

Q ss_pred             EEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      -+++-+.+|++.++.... .+++..-.. -..+.-++++|++.+|++- ..|.++++.+++.
T Consensus       330 gF~~l~~~G~L~~f~st~-~~~lL~~~~-~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr  388 (733)
T COG4590         330 GFYSLYRNGTLQSFYSTS-EKLLLFERA-YQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENR  388 (733)
T ss_pred             eEEEEcCCCceeeeeccc-Ccceehhhh-hcCcceeeeCcccchheee-cCCceEEEEecCC
Confidence            788888999999988765 444433332 2356678899999988875 3678999988764

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=84.80  E-value=2.8  Score=19.45  Aligned_cols=24  Identities=8%  Similarity=0.192  Sum_probs=13.7

Q ss_pred             eeEEEeecCCCeeEEecCCCeEEE
Q 022870          255 VLCLSIDESCNGGISGGADQKIVL  278 (291)
Q Consensus       255 v~~~~~~~~~~~l~s~s~dg~i~v  278 (291)
                      ..+++.+++|+++++=+....|++
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEE
Confidence            345666666665555555555554

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.67  E-value=17  Score=28.44  Aligned_cols=170  Identities=9%  Similarity=0.072  Sum_probs=90.0

Q ss_pred             cceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc
Q 022870           63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE  142 (291)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (291)
                      ..+.++.|+|  +.+.|++......-.+|=-..++.+.......-..+..                              
T Consensus        86 ~nvS~LTynp--~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~------------------------------  133 (316)
T COG3204          86 ANVSSLTYNP--DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPET------------------------------  133 (316)
T ss_pred             ccccceeeCC--CcceEEEecCCCceEEEEecCCceEEEecccccCChhH------------------------------
Confidence            3399999999  88888887777766666555565544111111000000                              


Q ss_pred             cccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCce
Q 022870          143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (291)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~  222 (291)
                                 +++..+|  .++++-..++.+.++.+.....+....... .++ +.....+.-.-.++ |.|..   + 
T Consensus       134 -----------Ieyig~n--~fvi~dER~~~l~~~~vd~~t~~~~~~~~~-i~L-~~~~k~N~GfEGlA-~d~~~---~-  193 (316)
T COG3204         134 -----------IEYIGGN--QFVIVDERDRALYLFTVDADTTVISAKVQK-IPL-GTTNKKNKGFEGLA-WDPVD---H-  193 (316)
T ss_pred             -----------eEEecCC--EEEEEehhcceEEEEEEcCCccEEeccceE-Eec-cccCCCCcCceeee-cCCCC---c-
Confidence                       3344444  344467778888888776553322222100 000 00011122223344 88873   3 


Q ss_pred             EEEeecCCCcEEEEEccCCCCce--eeccccc-------cceeEEEeec-CCCeeEEecCCCeEEEEEcCCC
Q 022870          223 NVLAGYEDGSILVWDIRNPGIPL--TAMKVHL-------EPVLCLSIDE-SCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~--~~~~~h~-------~~v~~~~~~~-~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      .|..+-+-.-+.||........+  .....+.       ..|.++.|++ ++.+|+-+.+++.+.-.|....
T Consensus       194 ~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         194 RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            67777777777777766311111  1111221       3577888864 5556666667777777766544

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=84.47  E-value=29  Score=30.85  Aligned_cols=86  Identities=10%  Similarity=0.142  Sum_probs=51.9

Q ss_pred             CCCCCceEEec-CCccceeEEEEcCC---CCEEEEecCCCe-EEEEeCCCC-----------e--EEEEEeeecCCcceE
Q 022870            5 PPPPDPVAVLR-GHRASVTDVCFHQT---KPILFAGTTGGE-LRIWDTVQH-----------R--TVSSSWVHSAAHGIV   66 (291)
Q Consensus         5 ~~~~~~~~~l~-~h~~~v~~l~~~~~---~~~l~s~~~dg~-v~iwd~~~~-----------~--~~~~~~~~~~~~~v~   66 (291)
                      |.| +.+..+. ..+.-|.||.....   ....+.|-.++. -++-.+..+           +  ....++. .  +.|.
T Consensus        58 PTP-KLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl-~--~kvv  133 (670)
T PF10395_consen   58 PTP-KLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKL-D--DKVV  133 (670)
T ss_pred             CCc-ceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEc-c--cceE
Confidence            444 6776665 35667888876542   224444534433 333322221           1  1122222 2  4599


Q ss_pred             EEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           67 SVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        67 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      .+.|.+  ++..+++.-.+|.|.+||...+
T Consensus       134 ~Ik~~~--~~~~I~vvl~nG~i~~~d~~~~  161 (670)
T PF10395_consen  134 GIKFSS--DGKIIYVVLENGSIQIYDFSEN  161 (670)
T ss_pred             EEEEec--CCCEEEEEEcCCcEEEEecccc
Confidence            999998  8899999999999999999443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.99  E-value=12  Score=35.41  Aligned_cols=87  Identities=10%  Similarity=0.052  Sum_probs=49.9

Q ss_pred             CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCC------CeE
Q 022870            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL------NKV   79 (291)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~l   79 (291)
                      .|++.+..+. |...=+.+-+-|.=...- .+.|+.+.+|+.+++.....+.+-.+.  |..+..-....|      .++
T Consensus        67 IP~el~eq~~-~~~~~~~mGiFpeI~RaW-iTiDn~L~lWny~~~~e~~~~d~~sht--Il~V~LvkPkpgvFv~~Iqhl  142 (1311)
T KOG1900|consen   67 IPDELLEQFS-NIECKTDMGIFPEIGRAW-ITIDNNLFLWNYESDNELAEYDGLSHT--ILKVGLVKPKPGVFVPEIQHL  142 (1311)
T ss_pred             CCHHHHHHhc-CcceeeeeccchhhcceE-EEeCCeEEEEEcCCCCccccccchhhh--heeeeeecCCCCcchhhhhee
Confidence            4444444444 444445555555322222 235789999999998777777776655  777765321111      344


Q ss_pred             EEEeCCCeEEEEECCCC
Q 022870           80 ISQGRDGTVKCWDIENG   96 (291)
Q Consensus        80 ~s~~~dg~i~iwd~~~~   96 (291)
                      +..+.--.|.++-+.-.
T Consensus       143 LvvaT~~ei~ilgV~~~  159 (1311)
T KOG1900|consen  143 LVVATPVEIVILGVSFD  159 (1311)
T ss_pred             EEecccceEEEEEEEec
Confidence            44444456777766543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=83.80  E-value=23  Score=29.14  Aligned_cols=103  Identities=16%  Similarity=0.162  Sum_probs=57.1

Q ss_pred             EEEEecCCcCeEEEEeCC---Cc----ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870          163 YMAVAGEQLSEVEIWDLN---TA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (291)
                      +.+.....+|.+..|-+.   .+    +.+++|..             ...+-.+. ....  .|  +|+.|-++.-|.-
T Consensus       172 ~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-------------~sQ~EGCV-VDDe--~g--~LYvgEE~~GIW~  233 (381)
T PF02333_consen  172 LYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-------------GSQPEGCV-VDDE--TG--RLYVGEEDVGIWR  233 (381)
T ss_dssp             EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--------------SS-EEEEE-EETT--TT--EEEEEETTTEEEE
T ss_pred             EEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-------------CCcceEEE-Eecc--cC--CEEEecCccEEEE
Confidence            333345567988877664   22    34566652             11122222 3332  13  7899999988888


Q ss_pred             EEccCCC----Cceeeccc--cccceeEEEe--ec--CCCeeEEecCCCeEEEEEcCC
Q 022870          236 WDIRNPG----IPLTAMKV--HLEPVLCLSI--DE--SCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       236 wd~~~~~----~~~~~~~~--h~~~v~~~~~--~~--~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      |+.+-..    ..+....+  ....|-.|+.  .+  +|-+|+|.=.+++..||+.+.
T Consensus       234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            8886311    22222222  3457778877  23  344455555678999999886

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=83.58  E-value=39  Score=31.66  Aligned_cols=106  Identities=13%  Similarity=0.104  Sum_probs=64.5

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                      .+..|...++++..|   ..+++||+...+.++..+.       .+   ....+..++ +.-     . .+++|...-.+
T Consensus       939 ~Ai~~f~~~~LagvG---~~l~~YdlG~K~lLRk~e~-------k~---~p~~Is~iq-t~~-----~-RI~VgD~qeSV  998 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVG---RFLRLYDLGKKKLLRKCEL-------KF---IPNRISSIQ-TYG-----A-RIVVGDIQESV  998 (1205)
T ss_pred             eEEeccCCEEEEecc---cEEEEeeCChHHHHhhhhh-------cc---CceEEEEEe-ecc-----e-EEEEeeccceE
Confidence            567788777775433   6899999998887776653       11   345666666 542     2 67777766666


Q ss_pred             EEEEccCCCCceeecccc--ccceeEEEe-ecCCCeeEEecCCCeEEEEEc
Q 022870          234 LVWDIRNPGIPLTAMKVH--LEPVLCLSI-DESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h--~~~v~~~~~-~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      .++-.+...+.+..+...  ...|+.+.+ +.+  .+|.+..=|.+.+-.+
T Consensus       999 ~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~--tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen  999 HFVRYRREDNQLIVFADDPVPRHVTALELLDYD--TVAGADRFGNIAVVRI 1047 (1205)
T ss_pred             EEEEEecCCCeEEEEeCCCccceeeEEEEecCC--ceeeccccCcEEEEEC
Confidence            665554434555555432  345666665 433  4566655566666544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=83.06  E-value=25  Score=28.95  Aligned_cols=31  Identities=23%  Similarity=0.148  Sum_probs=16.3

Q ss_pred             cCCCCCcEEEEe---cCCcCeEEEEeCCCcceee
Q 022870          156 VPAEGPKYMAVA---GEQLSEVEIWDLNTAERCT  186 (291)
Q Consensus       156 ~~~~~~~~~~~~---g~~d~~i~~wd~~~~~~~~  186 (291)
                      |.|+|..+....   +..+..|.-+|+.+++...
T Consensus       245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~  278 (386)
T PF14583_consen  245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR  278 (386)
T ss_dssp             E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred             ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence            788888776543   3445578888888876543

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=82.89  E-value=34  Score=30.45  Aligned_cols=32  Identities=19%  Similarity=0.404  Sum_probs=28.6

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQ   49 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~   49 (291)
                      .+.|-.+.|.+++..++....+|.|.+||...
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~  160 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSE  160 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccc
Confidence            57789999999999999999999999999943

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.75  E-value=4.6  Score=20.30  Aligned_cols=31  Identities=6%  Similarity=0.194  Sum_probs=19.2

Q ss_pred             cCCccceeEEEEcCCCCEEEEe-cCC--CeEEEE
Q 022870           15 RGHRASVTDVCFHQTKPILFAG-TTG--GELRIW   45 (291)
Q Consensus        15 ~~h~~~v~~l~~~~~~~~l~s~-~~d--g~v~iw   45 (291)
                      ......-....|+|||+.|+-. ..+  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3345567888999999877654 444  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=82.47  E-value=9.6  Score=23.84  Aligned_cols=42  Identities=19%  Similarity=0.034  Sum_probs=27.7

Q ss_pred             cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           37 TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        37 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      ..+|.+.-||..+++....+.+-.-   -..++.++  |+..++.+-
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L~f---pNGVals~--d~~~vlv~E   75 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGLYF---PNGVALSP--DESFVLVAE   75 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEESS---EEEEEE-T--TSSEEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehhCCCc---cCeEEEcC--CCCEEEEEe
Confidence            3468899999988876555555432   68999999  888666543

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=82.10  E-value=23  Score=27.89  Aligned_cols=155  Identities=14%  Similarity=0.132  Sum_probs=83.6

Q ss_pred             eEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccc
Q 022870           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV  144 (291)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (291)
                      +..+.++.    ++.+.+..+.-+++.|+.+...... +-.+.......+                              
T Consensus        89 ~~Dv~vse----~yvyvad~ssGL~IvDIS~P~sP~~-~~~lnt~gyayg------------------------------  133 (370)
T COG5276          89 FADVRVSE----EYVYVADWSSGLRIVDISTPDSPTL-IGFLNTDGYAYG------------------------------  133 (370)
T ss_pred             hheeEecc----cEEEEEcCCCceEEEeccCCCCcce-eccccCCceEEE------------------------------
Confidence            56777766    6788888888899999998764321 111111111111                              


Q ss_pred             cccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEE
Q 022870          145 DTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (291)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l  224 (291)
                                 +.-.|++..+ + ..|.-..++|+.+.+.....-         .-....+....+. .+     |. +-
T Consensus       134 -----------v~vsGn~aYV-a-dlddgfLivdvsdpssP~lag---------rya~~~~d~~~v~-IS-----Gn-~A  184 (370)
T COG5276         134 -----------VYVSGNYAYV-A-DLDDGFLIVDVSDPSSPQLAG---------RYALPGGDTHDVA-IS-----GN-YA  184 (370)
T ss_pred             -----------EEecCCEEEE-e-eccCcEEEEECCCCCCceeee---------eeccCCCCceeEE-Ee-----cC-eE
Confidence                       2233444443 2 224446677776654322111         0000111112222 44     44 77


Q ss_pred             EeecCCCcEEEEEccCCCCceeecccccc-ceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          225 LAGYEDGSILVWDIRNPGIPLTAMKVHLE-PVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      ..+..|+-+.+-|+.++..|...-.-..+ .+.++..+++..+++... . -+.+-|.++.+
T Consensus       185 YvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~-e-gvlivd~s~~s  244 (370)
T COG5276         185 YVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD-E-GVLIVDVSGPS  244 (370)
T ss_pred             EEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc-c-ceEEEecCCCC
Confidence            77788999999999987666543332233 678888888866555442 2 35555554443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=82.07  E-value=9.4  Score=34.06  Aligned_cols=84  Identities=19%  Similarity=0.172  Sum_probs=55.8

Q ss_pred             CceEEecCCccceeEEEEc--CCCCEEEEecCCCeEEEEeCCCCe-EEEEEeeecCCcceEEEEEeecCC---CC-eEEE
Q 022870            9 DPVAVLRGHRASVTDVCFH--QTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIG---LN-KVIS   81 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~--~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~---~~-~l~s   81 (291)
                      +|...++. ...+++++++  ...++||.++....|.||-..... .......+.....|-+|+|.+...   |. .+++
T Consensus       155 ~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a  233 (717)
T PF08728_consen  155 KPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVA  233 (717)
T ss_pred             CCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEE
Confidence            34555553 3479999999  778899999888889888654321 111111112223499999988431   22 6778


Q ss_pred             EeCCCeEEEEEC
Q 022870           82 QGRDGTVKCWDI   93 (291)
Q Consensus        82 ~~~dg~i~iwd~   93 (291)
                      ++-.|.+.+|++
T Consensus       234 ~dI~G~v~~~~I  245 (717)
T PF08728_consen  234 TDISGEVWTFKI  245 (717)
T ss_pred             EeccCcEEEEEE
Confidence            999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.99  E-value=32  Score=29.51  Aligned_cols=34  Identities=18%  Similarity=0.087  Sum_probs=25.9

Q ss_pred             ceeEEEeecCC---CeeEEecCCCeEEEEEcCCCcee
Q 022870          254 PVLCLSIDESC---NGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       254 ~v~~~~~~~~~---~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      .+...+|+|+.   ..|..-+.|+.||+||+...+.+
T Consensus       167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence            56778898865   45666778999999999876544

>PHA02790 Kelch-like protein; Provisional

Probab=81.71  E-value=33  Score=29.46  Aligned_cols=66  Identities=11%  Similarity=0.015  Sum_probs=32.8

Q ss_pred             CCCEEEEecCC--CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC---eEEEEECCCCCC
Q 022870           29 TKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG---TVKCWDIENGGL   98 (291)
Q Consensus        29 ~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~   98 (291)
                      ++...+.||.+  ..+..||..+++-...-....... -.+++. -  ++...+.||.++   .+..||.++++.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~-~~~~~~-~--~g~IYviGG~~~~~~~ve~ydp~~~~W  388 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC-NPAVAS-I--NNVIYVIGGHSETDTTTEYLLPNHDQW  388 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc-ccEEEE-E--CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence            55566777754  357778866543322111111100 112222 2  446667777553   466788776644

>PF01011 PQQ: PQQ enzyme repeat family

Probab=81.64  E-value=5.1  Score=20.13  Aligned_cols=28  Identities=18%  Similarity=0.182  Sum_probs=23.3

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeee
Q 022870           32 ILFAGTTGGELRIWDTVQHRTVSSSWVH   59 (291)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~   59 (291)
                      .++.++.||.|.-.|.++|+.+..++..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            4566799999999999999998887643

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=80.64  E-value=20  Score=27.54  Aligned_cols=55  Identities=24%  Similarity=0.253  Sum_probs=38.4

Q ss_pred             eEEEeecCCCcEEEEEccCCCCceeeccccccceeEEE----ee-cCCCeeEEecCCCeEEEE
Q 022870          222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS----ID-ESCNGGISGGADQKIVLY  279 (291)
Q Consensus       222 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~----~~-~~~~~l~s~s~dg~i~vw  279 (291)
                      ..|+.|+++|.|+|.|.+. ...+..++-..-++ .+.    |+ -+.+ ++.++.||.|++-
T Consensus       196 scLViGTE~~~i~iLd~~a-f~il~~~~lpsvPv-~i~~~G~~devdyR-I~Va~Rdg~iy~i  255 (257)
T PF14779_consen  196 SCLVIGTESGEIYILDPQA-FTILKQVQLPSVPV-FISVSGQYDEVDYR-IVVACRDGKIYTI  255 (257)
T ss_pred             ceEEEEecCCeEEEECchh-heeEEEEecCCCce-EEEEEeeeeccceE-EEEEeCCCEEEEE
Confidence            3899999999999999886 56666666544443 222    34 4544 6666789988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	291
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-04

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/299 (18%), Positives = 113/299 (37%), Gaps = 58/299 (19%)
Query: 9   DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
           D    L+GH  SV D+ F  +  +L + +    +++WD      + +  +H   H + SV
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSV 198
Query: 69  ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV--------- 119
           +  P+   + ++S  RD T+K W+++ G         +KT + H   + +V         
Sbjct: 199 SIMPN--GDHIVSASRDKTIKMWEVQTG-------YCVKTFTGHREWVRMVRPNQDGTLI 249
Query: 120 ----------------KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163
                           KE  A  ++     +C       +  + S     +   +  P  
Sbjct: 250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309
Query: 164 MAVAGEQLSEVEIWDLNTAERCTRL--HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 221
             ++G +   +++WD++T      L  H N   G   F S G+                 
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKF---------------- 352
Query: 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
             +L+  +D ++ VWD +N    +  +  H   V  L   ++    ++G  DQ + ++ 
Sbjct: 353 --ILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
           P   L GH   ++ + F+ T  +L + +  G LRIW      + +  + HS      S+ 
Sbjct: 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-----SIV 293
Query: 70  TGPSIGLNKVISQGRDGTVKCWDIENGGL 98
           +   +G +KVIS   DG+V+ W ++   L
Sbjct: 294 SASWVGDDKVISCSMDGSVRLWSLKQNTL 322

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
           P  V VLRGH ASV  V  H    I+ +G+    L +WD  Q + +       + H    
Sbjct: 260 PYFVGVLRGHMASVRTVSGHGN--IVVSGSYDNTLIVWDVAQMKCLYIL----SGHTDRI 313
Query: 68  VATGPSIGLNKVISQGRDGTVKCWDIENGGL 98
            +T       + IS   D T++ WD+ENG L
Sbjct: 314 YSTIYDHERKRCISASMDTTIRIWDLENGEL 344

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
           P  V VLRGH ASV  V  H    I+ +G+    L +WD  Q + +       + H    
Sbjct: 260 PYFVGVLRGHXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXKCLYIL----SGHTDRI 313
Query: 68  VATGPSIGLNKVISQGRDGTVKCWDIENGGL 98
            +T       + IS   D T++ WD+ENG L
Sbjct: 314 YSTIYDHERKRCISASXDTTIRIWDLENGEL 344

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 101/256 (39%), Gaps = 59/256 (23%)
Query: 11  VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70
           V +L+GH   +  + +  +   L +G+    +RIWD    RT   S   S   G+ +VA 
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL---RTGQCSLTLSIEDGVTTVAV 214
Query: 71  GPSIGLNKVISQGR-DGTVKCWDIENGGL-----SSNPSLTIKTNSYHFCKLSLVKEPYA 124
            P  G  K I+ G  D  V+ WD E G L     S N S T   +S +    S+V     
Sbjct: 215 SPGDG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY----SVV----- 263
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER 184
                      + R+ G++V                     V+G     V++W+L  A  
Sbjct: 264 -----------FTRD-GQSV---------------------VSGSLDRSVKLWNLQNANN 290
Query: 185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244
            +     + G         +   ++V     + +Q    +L+G +D  +L WD +  G P
Sbjct: 291 KSDSKTPNSGTCEVTYIGHKDFVLSV-----ATTQNDEYILSGSKDRGVLFWD-KKSGNP 344
Query: 245 LTAMKVHLEPVLCLSI 260
           L  ++ H   V+ +++
Sbjct: 345 LLMLQGHRNSVISVAV 360

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.98
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.98
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.93
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.74
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.65
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.64
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.63
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.63
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.62
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.58
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.57
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.55
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.55
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.54
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.52
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.51
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.47
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.46
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.44
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.44
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.42
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.39
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.38
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.38
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.37
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.37
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.36
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.33
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.33
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.32
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.31
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.3
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.28
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.27
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.23
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.23
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.23
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.22
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.22
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.21
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.2
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.17
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.16
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.09
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.09
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.08
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.08
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.04
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.04
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.02
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.99
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.99
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.97
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.97
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.95
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.94
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.94
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.92
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.89
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.88
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.87
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.86
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.85
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.81
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.81
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.8
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.79
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.72
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.69
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.68
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.63
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.62
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.61
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.6
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.5
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.48
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.47
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.47
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.43
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.39
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.29
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.24
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.21
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.2
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.2
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.17
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.14
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.14
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.13
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.13
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.1
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.06
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.04
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.99
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.98
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.96
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.91
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.9
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.89
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.89
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.88
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.86
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.81
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.77
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.74
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.68
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.68
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.61
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.59
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.58
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.56
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.52
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.52
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.41
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.4
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.26
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.06
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.03
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.94
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.89
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.89
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.88
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.8
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.78
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.75
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.74
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.52
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.17
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.1
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.01
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.98
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.96
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.95
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.89
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.63
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.62
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.21
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.18
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.99
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.94
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.87
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.67
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.34
3ott_A	758	Two-component system sensor histidine kinase; beta	93.99
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.9
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.79
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.73
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.69
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.29
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.79
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.73
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.7
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.45
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.22
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	91.03
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.52
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.17
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	89.75
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.48
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	89.28
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.14
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	88.86
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	88.21
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.37
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	86.22
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	83.64
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.54
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.52
4gz8_A	667	Semaphorin-3A; multi-domain, cell-CELL signaling,	80.49
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	80.38

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-42  Score=272.21  Aligned_cols=259  Identities=15%  Similarity=0.206  Sum_probs=211.0

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +..++|.+|.+.|++++|+|++++|++|+.||+|++||+++++.+..+..|...  |.+++|+|  ++++|++|+.|++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP--VRAGKFIA--RKNWIIVGSDDFRI   79 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEEEG--GGTEEEEEETTSEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCc--EEEEEEeC--CCCEEEEECCCCEE
Confidence            567899999999999999999999999999999999999999999999988855  99999999  99999999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (291)
                      ++||+++++...  .+..+........+.+... ........+...+|++.........+.+|..    ++|+|.+..++
T Consensus        80 ~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l  156 (304)
T 2ynn_A           80 RVFNYNTGEKVV--DFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (304)
T ss_dssp             EEEETTTCCEEE--EEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred             EEEECCCCcEEE--EEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence            999999886543  2333344445555544432 2334455677888998877666666777766    89999665555


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                      + +|+.|+.|++||+++......+..       +|    ...+..+. |+|.. ++. +|++|+.|+.|++||+++ +++
T Consensus       157 ~-sgs~D~~v~iwd~~~~~~~~~~~~-------~~----~~~v~~~~-~~~~~-~~~-~l~s~s~D~~i~iWd~~~-~~~  220 (304)
T 2ynn_A          157 A-SGCLDRTVKVWSLGQSTPNFTLTT-------GQ----ERGVNYVD-YYPLP-DKP-YMITASDDLTIKIWDYQT-KSC  220 (304)
T ss_dssp             E-EEETTSEEEEEETTCSSCSEEEEC-------CC----TTCEEEEE-ECCST-TCC-EEEEEETTSEEEEEETTT-TEE
T ss_pred             E-EEeCCCeEEEEECCCCCccceecc-------CC----cCcEEEEE-EEEcC-CCC-EEEEEcCCCeEEEEeCCC-Ccc
Confidence            5 677799999999998877666652       23    22345555 87752 244 899999999999999998 889


Q ss_pred             eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +..+.+|...|.+++|+|++.+|++|+.||.|++||++++++++++
T Consensus       221 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~  266 (304)
T 2ynn_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (304)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence            9999999999999999999999999999999999999999887764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-40  Score=268.40  Aligned_cols=265  Identities=14%  Similarity=0.254  Sum_probs=196.4

Q ss_pred             CCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         5 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      |....+.++|++|.++|++++|+|++++|++|+.||+|+|||+.+++....+..|...  |.+++|+|  ++++|++|+.
T Consensus        53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~--v~~~~~s~--~g~~las~~~  128 (380)
T 3iz6_a           53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW--VMECAFAP--NGQSVACGGL  128 (380)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT--CCCCEECT--TSSEEEECCS
T ss_pred             cceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCC--EEEEEECC--CCCEEEEeeC
Confidence            4445677899999999999999999999999999999999999999999999988855  99999999  8899999999


Q ss_pred             CCeEEEEECCCCCCCC-----C----------------C-----cccc---------------------------ccceE
Q 022870           85 DGTVKCWDIENGGLSS-----N----------------P-----SLTI---------------------------KTNSY  111 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~-----~----------------~-----~~~~---------------------------~~~~~  111 (291)
                      |+.+++||+.+.....     .                +     +...                           +....
T Consensus       129 d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v  208 (380)
T 3iz6_a          129 DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV  208 (380)
T ss_dssp             SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred             CCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence            9999999876421100     0                0     0000                           00000


Q ss_pred             EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeE
Q 022870          112 HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR  187 (291)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~  187 (291)
                      ....+..............+...+|+++........+.+|..    ++|+|++..++  +|+.|++|++||+++++++..
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFG--TGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEE--EECSSSCEEEEETTTTEEEEE
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEE--EEcCCCeEEEEECCCCcEEEE
Confidence            000111111111223334556777887755445555666765    89999997654  778899999999999998887


Q ss_pred             ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec----cccccceeEEEeecC
Q 022870          188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM----KVHLEPVLCLSIDES  263 (291)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~----~~h~~~v~~~~~~~~  263 (291)
                      +....     .........+.+++ |+|+   |+ +|++|+.||.|++||+.+ ++.+..+    .+|.+.|++++|+|+
T Consensus       287 ~~~~~-----~~~~~~~~~v~~~~-~s~~---g~-~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~v~~l~~s~d  355 (380)
T 3iz6_a          287 YNREP-----DRNDNELPIVTSVA-FSIS---GR-LLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGRISCLGLSSD  355 (380)
T ss_dssp             ECCCC-----SSSCCSSCSCSEEE-ECSS---SS-EEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCCCCEEEECSS
T ss_pred             ecccc-----cccccccCceEEEE-ECCC---CC-EEEEEECCCCEEEEECCC-CceEEEEecccCCCCCceEEEEECCC
Confidence            76311     11111233467776 9998   44 999999999999999987 6666655    689999999999999


Q ss_pred             CCeeEEecCCCeEEEEEcCCCce
Q 022870          264 CNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       264 ~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      +.+|++||.||.|++|++...+.
T Consensus       356 g~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          356 GSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             SSEEEEECTTSCEEEEECCSSSS
T ss_pred             CCEEEEeeCCCCEEEEecCCCcc
Confidence            99999999999999999987653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-40  Score=271.46  Aligned_cols=256  Identities=16%  Similarity=0.239  Sum_probs=206.9

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      ....+.+|.++|++++|+|++.+|++|+.||+|++||+.+++....+.+|...  |.+++|+|  ++.+|++|+.|++|+
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~--V~~v~~~~--~~~~l~sgs~D~~i~  175 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS--VQDISFDH--SGKLLASCSADMTIK  175 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSC--EEEEEECT--TSSEEEEEETTSCCC
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCc--EEEEEEcC--CCCEEEEEeCCCeEE
Confidence            35678999999999999999999999999999999999999999999999855  99999999  999999999999999


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEE
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  165 (291)
                      +||+.+.+...  .+..+........+.+... ........+...+|++....... .+.+|..    ++++|++..++ 
T Consensus       176 iwd~~~~~~~~--~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~~g~~l~-  250 (410)
T 1vyh_C          176 LWDFQGFECIR--TMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQDGTLIA-  250 (410)
T ss_dssp             EEETTSSCEEE--CCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECTTSSEEE-
T ss_pred             EEeCCCCceeE--EEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEE-EEeCCCccEEEEEECCCCCEEE-
Confidence            99998876543  2223333444444444332 22334455667888887765433 3445555    78999987544 


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCC-----------------CCceEEEeec
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS-----------------QGFVNVLAGY  228 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----------------~g~~~l~~g~  228 (291)
                       +|+.|+.|++||++++++...+.        +|.    ..+.++. |+|+..                 .|. +|++|+
T Consensus       251 -s~s~D~~v~vwd~~~~~~~~~~~--------~h~----~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs  315 (410)
T 1vyh_C          251 -SCSNDQTVRVWVVATKECKAELR--------EHR----HVVECIS-WAPESSYSSISEATGSETKKSGKPGP-FLLSGS  315 (410)
T ss_dssp             -EEETTSCEEEEETTTCCEEEEEC--------CCS----SCEEEEE-ECCSCGGGGGGGCCSCC-------CC-EEEEEE
T ss_pred             -EEcCCCeEEEEECCCCceeeEec--------CCC----ceEEEEE-EcCcccccchhhhccccccccCCCCC-EEEEEe
Confidence             66779999999999999888887        563    4567776 998632                 144 899999


Q ss_pred             CCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      .||.|++||+++ +.++..+.+|...|++++|+|++++|++|+.||.|++||++++++++++
T Consensus       316 ~D~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~  376 (410)
T 1vyh_C          316 RDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  376 (410)
T ss_dssp             TTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             CCCeEEEEECCC-CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence            999999999998 8899999999999999999999999999999999999999998876653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=264.34  Aligned_cols=245  Identities=14%  Similarity=0.129  Sum_probs=187.8

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEE----eeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      .|...|++++|+|++ .|++|+.||+|+|||+++++.+..+    .+|.  ..|.+++|+|  ++++|++|+.|++|++|
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~--~~V~~v~~sp--dg~~l~sgs~d~~i~iw  154 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHD--DIVSTVSVLS--SGTQAVSGSKDICIKVW  154 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCS--SCEEEEEECT--TSSEEEEEETTSCEEEE
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCC--CCEEEEEECC--CCCEEEEEeCCCeEEEE
Confidence            366789999999986 7889999999999999988754433    3566  4599999999  99999999999999999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccC-CCCCC----cccCCCCCcEEEE
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS-LCDSK----DDVPAEGPKYMAV  166 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~  166 (291)
                      |+++++...  .+..+........+..............+...+|+++..+...... ..+..    ++|+|++..+++ 
T Consensus       155 d~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~-  231 (344)
T 4gqb_B          155 DLAQQVVLS--SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV-  231 (344)
T ss_dssp             ETTTTEEEE--EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE-
T ss_pred             ECCCCcEEE--EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE-
Confidence            999887643  2333444555555555544444455566778889988776544332 22222    889998877776 


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +|+.||.|++||+++++++..+.        +|.    ..+.+++ |+|+   +..+|++|+.|+.|+|||+++ ++ +.
T Consensus       232 sg~~dg~v~~wd~~~~~~~~~~~--------~h~----~~v~~v~-fsp~---g~~~lasgs~D~~i~vwd~~~-~~-~~  293 (344)
T 4gqb_B          232 FGDENGTVSLVDTKSTSCVLSSA--------VHS----QCVTGLV-FSPH---SVPFLASLSEDCSLAVLDSSL-SE-LF  293 (344)
T ss_dssp             EEETTSEEEEEESCC--CCEEEE--------CCS----SCEEEEE-ECSS---SSCCEEEEETTSCEEEECTTC-CE-EE
T ss_pred             EeccCCcEEEEECCCCcEEEEEc--------CCC----CCEEEEE-EccC---CCeEEEEEeCCCeEEEEECCC-Cc-EE
Confidence            57779999999999999999988        674    4577787 9998   333899999999999999987 54 45


Q ss_pred             eccccccceeEEEeecCCC-eeEEecCCCeEEEEEcCCCce
Q 022870          247 AMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      .+.+|.+.|++++|+|++. +|+++|.||+|++|++.+..+
T Consensus       294 ~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          294 RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            6789999999999999886 567999999999999987654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.8e-39  Score=257.41  Aligned_cols=257  Identities=16%  Similarity=0.229  Sum_probs=202.0

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      +.+...++++|.++|++++|+|++++|++|+.||+|++||+.+++.+..+..|...  |.+++|+|  ++++|++|+.|+
T Consensus        44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~--v~~~~~s~--~~~~l~s~~~d~  119 (340)
T 1got_B           44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAYAP--SGNYVACGGLDN  119 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSC--EEEEEECT--TSSEEEEEETTC
T ss_pred             cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCcc--EEEEEECC--CCCEEEEEeCCC
Confidence            34567889999999999999999999999999999999999999999999888855  99999999  999999999999


Q ss_pred             eEEEEECCCCCCCCCCccc--cccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCC
Q 022870           87 TVKCWDIENGGLSSNPSLT--IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG  160 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  160 (291)
                      .|++||+.+..........  .+......+.+...  .........+...+|++...... ..+.+|..    ++|+|++
T Consensus       120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~s~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~~~~~~  196 (340)
T 1got_B          120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQT-TTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET--TEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTS
T ss_pred             eEEEEECccCCCcceeEEEecCCCccEEEEEECCC--CcEEEEECCCcEEEEECCCCcEE-EEEcCCCCceEEEEECCCC
Confidence            9999999876432111111  22233333333322  22334455667788888776543 34456655    8999998


Q ss_pred             CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      ..++  +|+.|+.|++||++++++...+.        +|.    ..+.++. |+|+   +. +|++|+.||.|++||+++
T Consensus       197 ~~l~--sg~~d~~v~~wd~~~~~~~~~~~--------~h~----~~v~~v~-~~p~---~~-~l~s~s~d~~v~iwd~~~  257 (340)
T 1got_B          197 RLFV--SGACDASAKLWDVREGMCRQTFT--------GHE----SDINAIC-FFPN---GN-AFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             SEEE--EEETTSCEEEEETTTCSEEEEEC--------CCS----SCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT
T ss_pred             CEEE--EEeCCCcEEEEECCCCeeEEEEc--------CCc----CCEEEEE-EcCC---CC-EEEEEcCCCcEEEEECCC
Confidence            7544  67779999999999999988887        663    4577776 9998   44 999999999999999998


Q ss_pred             CCCceeecc--ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          241 PGIPLTAMK--VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       241 ~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                       .+.+..+.  .+...|++++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus       258 -~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~  308 (340)
T 1got_B          258 -DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             -TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             -CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe
Confidence             66665554  23357999999999999999999999999999988776543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=257.15  Aligned_cols=253  Identities=16%  Similarity=0.206  Sum_probs=194.0

Q ss_pred             ceEEecCCccceeEEEEcCC----CCEEEEecCCCeEEEEeCCCCeE--EEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           10 PVAVLRGHRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~----~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      ..+.+++|.++|++++|+|+    +.+|+||+.|++|+|||+.+++.  ...+.+|...  |.+++|++  ++.++++++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~--v~~~~~~~--~~~~l~s~s   99 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLG--VVSVDISH--TLPIAASSS   99 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC--EEEEEECS--SSSEEEEEE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCC--EEEEEECC--CCCEEEEEe
Confidence            45677899999999999974    56899999999999999887654  4457778754  99999999  889999999


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCC
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  159 (291)
                      .|++|++||+++++...  .+...........+++.... .......+...+|++........ +..+..    ++|+|+
T Consensus       100 ~D~~i~lWd~~~~~~~~--~~~~~~~~~~~~~~spdg~~-l~~g~~dg~v~i~~~~~~~~~~~-~~~~~~~v~~~~~spd  175 (321)
T 3ow8_A          100 LDAHIRLWDLENGKQIK--SIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNIFGVESGKKEYS-LDTRGKFILSIAYSPD  175 (321)
T ss_dssp             TTSEEEEEETTTTEEEE--EEECCTTCCCCEEECTTSSE-EEEECTTSEEEEEETTTCSEEEE-EECSSSCEEEEEECTT
T ss_pred             CCCcEEEEECCCCCEEE--EEeCCCccEEEEEECCCCCE-EEEEcCCCcEEEEEcCCCceeEE-ecCCCceEEEEEECCC
Confidence            99999999999876533  11112222222333332221 22223345566777765543322 222322    899999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      ++.++  +|+.|+.|++||+++++.+..+.        +|..    .+.++. |+|+   ++ +|++|+.||.|++||++
T Consensus       176 g~~la--sg~~dg~i~iwd~~~~~~~~~~~--------~h~~----~v~~l~-~spd---~~-~l~s~s~dg~i~iwd~~  236 (321)
T 3ow8_A          176 GKYLA--SGAIDGIINIFDIATGKLLHTLE--------GHAM----PIRSLT-FSPD---SQ-LLVTASDDGYIKIYDVQ  236 (321)
T ss_dssp             SSEEE--EEETTSCEEEEETTTTEEEEEEC--------CCSS----CCCEEE-ECTT---SC-EEEEECTTSCEEEEETT
T ss_pred             CCEEE--EEcCCCeEEEEECCCCcEEEEEc--------ccCC----ceeEEE-EcCC---CC-EEEEEcCCCeEEEEECC
Confidence            97655  67779999999999999988887        6643    566676 9998   44 99999999999999999


Q ss_pred             CCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      + .+.+..+.+|...|.+++|+|++.+|++++.|+.|++||++++++++++
T Consensus       237 ~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          237 H-ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF  286 (321)
T ss_dssp             T-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             C-cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence            8 7888999999999999999999999999999999999999999988765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.6e-40  Score=263.41  Aligned_cols=253  Identities=13%  Similarity=0.147  Sum_probs=184.9

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEE----EeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS----SWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      .....+|...|++++|+|++. +++++.||+|+|||+.+++....    ...|.  .+|.+++|+|  ++++|++|+.|+
T Consensus        87 ~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~--~~V~~v~~sp--dg~~l~sgs~dg  161 (357)
T 4g56_B           87 CTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHD--DIVKTLSVFS--DGTQAVSGGKDF  161 (357)
T ss_dssp             CSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCS--SCEEEEEECS--SSSEEEEEETTS
T ss_pred             ecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCC--CCEEEEEECC--CCCEEEEEeCCC
Confidence            344557999999999999985 55678899999999988765432    33555  4599999999  999999999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcccccc-CCCCCC----cccCCCCC
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SLCDSK----DDVPAEGP  161 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~  161 (291)
                      +|++||+++++...  .+..+........+.+............+...+|+++..+..... ...+..    ++|+|++.
T Consensus       162 ~v~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  239 (357)
T 4g56_B          162 SVKVWDLSQKAVLK--SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD  239 (357)
T ss_dssp             CEEEEETTTTEEEE--EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred             eEEEEECCCCcEEE--EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence            99999999886543  233344445555555554444445556677888888776644432 233333    89999988


Q ss_pred             cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                      .+++ +|+.|+.|++||+++++++..+.        +|.    ..+.+++ |+|++   ..+|++|+.||.|+|||+++ 
T Consensus       240 ~~la-~g~~d~~i~~wd~~~~~~~~~~~--------~~~----~~v~~l~-~sp~~---~~~lasgs~D~~i~iwd~~~-  301 (357)
T 4g56_B          240 DTFA-CGDETGNVSLVNIKNPDSAQTSA--------VHS----QNITGLA-YSYHS---SPFLASISEDCTVAVLDADF-  301 (357)
T ss_dssp             TEEE-EEESSSCEEEEESSCGGGCEEEC--------CCS----SCEEEEE-ECSSS---SCCEEEEETTSCEEEECTTS-
T ss_pred             ceEE-EeecccceeEEECCCCcEeEEEe--------ccc----eeEEEEE-EcCCC---CCEEEEEeCCCEEEEEECCC-
Confidence            7776 56679999999999999988887        563    4567776 99983   22899999999999999997 


Q ss_pred             CCceeeccccccceeEEEeec-CCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          242 GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      ++++.. .+|.+.|++++|+| ++.+|+|+|.||+|++|++.+......
T Consensus       302 ~~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~  349 (357)
T 4g56_B          302 SEVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTEN  349 (357)
T ss_dssp             CEEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-------
T ss_pred             CcEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc
Confidence            666554 47999999999998 789999999999999999987554433

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-39  Score=264.92  Aligned_cols=248  Identities=18%  Similarity=0.309  Sum_probs=197.7

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .+...++.+|.+.|++++|+|++.+|++|+.|++|++||+.+++++..+.+|...  |.+++|+|  ++++|++|+.|++
T Consensus       140 ~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~--V~~v~~~p--~~~~l~s~s~D~~  215 (410)
T 1vyh_C          140 GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN--VSSVSIMP--NGDHIVSASRDKT  215 (410)
T ss_dssp             CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC--EEEEEECS--SSSEEEEEETTSE
T ss_pred             CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC--EEEEEEeC--CCCEEEEEeCCCe
Confidence            4667899999999999999999999999999999999999999999999999855  99999999  9999999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCC--
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP--  161 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--  161 (291)
                      |++||++++....  .+..+........+..... ........+...+|++....... .+.+|..    ++|+|++.  
T Consensus       216 i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~  291 (410)
T 1vyh_C          216 IKMWEVQTGYCVK--TFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKA-ELREHRHVVECISWAPESSYS  291 (410)
T ss_dssp             EEEEETTTCCEEE--EEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECCSCGGG
T ss_pred             EEEEECCCCcEEE--EEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceee-EecCCCceEEEEEEcCccccc
Confidence            9999999886533  2222223333333332221 22334455677888887655433 3344544    77888632  


Q ss_pred             -----------------cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEE
Q 022870          162 -----------------KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (291)
Q Consensus       162 -----------------~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l  224 (291)
                                       .+++ +|+.|+.|++||+++++++..+.        +|.    ..+.++. |+|+   |+ +|
T Consensus       292 ~~~~~~~~~~~~~~~~g~~l~-sgs~D~~i~iwd~~~~~~~~~~~--------~h~----~~v~~v~-~~~~---g~-~l  353 (410)
T 1vyh_C          292 SISEATGSETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLV--------GHD----NWVRGVL-FHSG---GK-FI  353 (410)
T ss_dssp             GGGGCCSCC-------CCEEE-EEETTSEEEEEETTTTEEEEEEE--------CCS----SCEEEEE-ECSS---SS-CE
T ss_pred             chhhhccccccccCCCCCEEE-EEeCCCeEEEEECCCCceEEEEE--------CCC----CcEEEEE-EcCC---CC-EE
Confidence                             2344 67789999999999999998887        664    3567776 9998   44 89


Q ss_pred             EeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      ++|+.||.|++||+++ ++++..+.+|...|++++|+|++.+|++|+.||.|++|+++
T Consensus       354 ~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          354 LSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEETTTEEEEECCTT-SCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEeCCCeEEEEECCC-CceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9999999999999998 88899999999999999999999999999999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=251.61  Aligned_cols=244  Identities=17%  Similarity=0.235  Sum_probs=199.1

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      ...+.+|...|.+++|++++.++++++.|++|++||+.+++.+..+..+...  +.+++|+|  ++++|++++.||.|++
T Consensus        73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~--~~~~~~sp--dg~~l~~g~~dg~v~i  148 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD--AWTLAFSP--DSQYLATGTHVGKVNI  148 (321)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC--CCCEEECT--TSSEEEEECTTSEEEE
T ss_pred             eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc--EEEEEECC--CCCEEEEEcCCCcEEE
Confidence            4578999999999999999999999999999999999999999999888754  99999999  9999999999999999


Q ss_pred             EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEE
Q 022870           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV  166 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  166 (291)
                      ||+++++...  .+..+........+++.... .......+...+|++....... .+.+|..    ++|+|++..++  
T Consensus       149 ~~~~~~~~~~--~~~~~~~~v~~~~~spdg~~-lasg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~spd~~~l~--  222 (321)
T 3ow8_A          149 FGVESGKKEY--SLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLH-TLEGHAMPIRSLTFSPDSQLLV--  222 (321)
T ss_dssp             EETTTCSEEE--EEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEE-EECCCSSCCCEEEECTTSCEEE--
T ss_pred             EEcCCCceeE--EecCCCceEEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEE-EEcccCCceeEEEEcCCCCEEE--
Confidence            9999876432  22222333444444444332 2233445667888887665433 3445544    89999997554  


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +|+.|+.|++||+++++....+.        +|.    ..+.+++ |+|+   +. +|++|+.|+.|++||+++ ++++.
T Consensus       223 s~s~dg~i~iwd~~~~~~~~~~~--------~h~----~~v~~~~-~sp~---~~-~l~s~s~D~~v~iwd~~~-~~~~~  284 (321)
T 3ow8_A          223 TASDDGYIKIYDVQHANLAGTLS--------GHA----SWVLNVA-FCPD---DT-HFVSSSSDKSVKVWDVGT-RTCVH  284 (321)
T ss_dssp             EECTTSCEEEEETTTCCEEEEEC--------CCS----SCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-TEEEE
T ss_pred             EEcCCCeEEEEECCCcceeEEEc--------CCC----CceEEEE-ECCC---CC-EEEEEeCCCcEEEEeCCC-CEEEE
Confidence            67789999999999999888887        663    4577787 9998   44 899999999999999998 88999


Q ss_pred             eccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      .+.+|...|++++|+|++.+|++++.||.|++||..
T Consensus       285 ~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          285 TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999999999999999999963

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.5e-38  Score=253.09  Aligned_cols=248  Identities=18%  Similarity=0.257  Sum_probs=191.4

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe------------------------------
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW------------------------------   57 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------------------   57 (291)
                      .+...+|++|.+.|++++|+|++.+|+||+.||+|++||..+++....+.                              
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            45678999999999999999999999999999999999987766544433                              


Q ss_pred             ------------------eecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecc
Q 022870           58 ------------------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV  119 (291)
Q Consensus        58 ------------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (291)
                                        .|.  ..|.+++|+|  ++..|++++.|++|++||+++++...  .+..+........+.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~  207 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHT--NYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQ--SFHGHGADVLCLDLAPS  207 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECS--SCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEE--EEECCSSCEEEEEECCC
T ss_pred             EEeccccccccccceeeeccC--CcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEE--EEcCCCCCeEEEEEEeC
Confidence                              344  3488888888  88899999999999999998876533  22223333334444433


Q ss_pred             cC-ccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccC
Q 022870          120 KE-PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG  194 (291)
Q Consensus       120 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~  194 (291)
                      .. .........+...+|+++...... .+.+|..    ++|+|++..++  +|+.|+.|++||++..+.+..+..    
T Consensus       208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~-~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~v~lwd~~~~~~~~~~~~----  280 (354)
T 2pbi_B          208 ETGNTFVSGGCDKKAMVWDMRSGQCVQ-AFETHESDVNSVRYYPSGDAFA--SGSDDATCRLYDLRADREVAIYSK----  280 (354)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEEEECC----
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEE-EecCCCCCeEEEEEeCCCCEEE--EEeCCCeEEEEECCCCcEEEEEcC----
Confidence            22 233444556778889887765433 3455555    89999997544  677799999999999887766652    


Q ss_pred             CCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC
Q 022870          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ  274 (291)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  274 (291)
                          +.  ....+.++. |+|+   |+ +|++|+.|+.|++||+.+ ++.+..+.+|...|++++|+|++++|++|+.||
T Consensus       281 ----~~--~~~~~~~~~-~s~~---g~-~l~~g~~d~~i~vwd~~~-~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          281 ----ES--IIFGASSVD-FSLS---GR-LLFAGYNDYTINVWDVLK-GSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             ----TT--CCSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             ----CC--cccceeEEE-EeCC---CC-EEEEEECCCcEEEEECCC-CceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence                21  122456676 9998   44 999999999999999988 888899999999999999999999999999999


Q ss_pred             eEEEEE
Q 022870          275 KIVLYN  280 (291)
Q Consensus       275 ~i~vw~  280 (291)
                      .|++|+
T Consensus       349 ~v~vW~  354 (354)
T 2pbi_B          349 TLRVWA  354 (354)
T ss_dssp             EEEEEC
T ss_pred             CEEecC
Confidence            999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.4e-38  Score=246.54  Aligned_cols=256  Identities=15%  Similarity=0.151  Sum_probs=189.1

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC--CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +..+.+|.+.|++++|+|+|++||+|+.|++|+|||+..  .+++.++.+|...  |.+++|++..++++|++|+.|++|
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~--V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGP--VWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSC--EEEEEECCGGGCSEEEEEETTTEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCC--eEEEEecCCCcCCEEEEEcCCCEE
Confidence            456889999999999999999999999999999999874  3677888999855  999999862237899999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeeccc-CccceeccCCCCceeeecccCcc-ccccCCCCCC----cccCCCC--
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGET-VDTDSLCDSK----DDVPAEG--  160 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~--  160 (291)
                      ++||+++++......+..+........+.+.. ..........+...+|+++.... ....+.+|..    ++|+|++  
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  159 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence            99999876532211222333445555555442 22333444556677788765532 2233445554    7899873  


Q ss_pred             ----------CcEEEEecCCcCeEEEEeCCCcc----eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe
Q 022870          161 ----------PKYMAVAGEQLSEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (291)
Q Consensus       161 ----------~~~~~~~g~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (291)
                                ..+++ +|+.|+.|++||+++++    ....+.        +|    ...+.+++ |+|++..+. +|++
T Consensus       160 ~~~~~~~~~~~~~l~-sgs~D~~v~lwd~~~~~~~~~~~~~l~--------~H----~~~V~~v~-~sp~~~~~~-~las  224 (297)
T 2pm7_B          160 EDGEHNGTKESRKFV-TGGADNLVKIWKYNSDAQTYVLESTLE--------GH----SDWVRDVA-WSPTVLLRS-YMAS  224 (297)
T ss_dssp             ----------CCEEE-EEETTSCEEEEEEETTTTEEEEEEEEC--------CC----SSCEEEEE-ECCCCSSSE-EEEE
T ss_pred             ccccCCCCCCcceEE-EEcCCCcEEEEEEcCCCceEEEEEEec--------CC----CCceEEEE-ECCCCCCce-EEEE
Confidence                      23444 67779999999998765    444555        66    44678887 999842234 8999


Q ss_pred             ecCCCcEEEEEccCCCC--ceeec--cccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          227 GYEDGSILVWDIRNPGI--PLTAM--KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       227 g~~dg~i~vwd~~~~~~--~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      |+.|+.|++||+++...  ....+  ..|...|.+++|+|++++|++++.||.|++|+.+.
T Consensus       225 ~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            99999999999986321  12233  56788999999999999999999999999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1e-37  Score=248.27  Aligned_cols=251  Identities=16%  Similarity=0.219  Sum_probs=186.6

Q ss_pred             ceEEecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCCC-----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           10 PVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      +..+|+||++.|++|+|+|+ +++|+||+.||+|+|||+.+.     .+...+.+|...  |.+++|+|  ++.+|++++
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~--V~~~~~s~--dg~~l~s~~  105 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF--VSDVVISS--DGQFALSGS  105 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC--EEEEEECT--TSSEEEEEE
T ss_pred             EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC--EEEEEECC--CCCEEEEEc
Confidence            45689999999999999996 689999999999999998764     356677888855  99999999  999999999


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCC
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  159 (291)
                      .|+.|++|+........  .............+.... .............+|+............+|..    ++|+++
T Consensus       106 ~d~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~  182 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTR--RFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN  182 (340)
T ss_dssp             TTSEEEEEETTTTEEEE--EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred             ccccceEEeecccceee--eecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence            99999999998765432  112222222222222222 22233344556677777666665556666655    788888


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      +...++++++.|+.|++||+++++.+..+.        +|.    ..+.++. |+|+   ++ +|++|+.||.|++||++
T Consensus       183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~--------~h~----~~v~~~~-~s~~---~~-~l~s~s~Dg~i~iwd~~  245 (340)
T 4aow_A          183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHI--------GHT----GYLNTVT-VSPD---GS-LCASGGKDGQAMLWDLN  245 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTTEEEEEEC--------CCS----SCEEEEE-ECTT---SS-EEEEEETTCEEEEEETT
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCceeeEec--------CCC----CcEEEEE-ECCC---CC-EEEEEeCCCeEEEEEec
Confidence            766665577789999999999999888887        663    4577776 9998   44 89999999999999987


Q ss_pred             CCCCceee-------------------------------------------------ccccccceeEEEeecCCCeeEEe
Q 022870          240 NPGIPLTA-------------------------------------------------MKVHLEPVLCLSIDESCNGGISG  270 (291)
Q Consensus       240 ~~~~~~~~-------------------------------------------------~~~h~~~v~~~~~~~~~~~l~s~  270 (291)
                      + .+++..                                                 ..+|...|++++|+|++++|++|
T Consensus       246 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg  324 (340)
T 4aow_A          246 E-GKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG  324 (340)
T ss_dssp             T-TEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred             c-CceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence            6 322111                                                 12466788899999999999999


Q ss_pred             cCCCeEEEEEcCCCc
Q 022870          271 GADQKIVLYNLDHST  285 (291)
Q Consensus       271 s~dg~i~vw~~~~~~  285 (291)
                      +.||.|+|||+++|+
T Consensus       325 s~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          325 YTDNLVRVWQVTIGT  339 (340)
T ss_dssp             ETTSCEEEEEEEC--
T ss_pred             eCCCEEEEEeCCCcC
Confidence            999999999988875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4e-38  Score=248.54  Aligned_cols=218  Identities=16%  Similarity=0.237  Sum_probs=175.3

Q ss_pred             CceEEecCCccceeEEEEcCCC-CEEEEecCCCeEEEEeCCC-----CeEEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      .+..+|++|.++|++++|+|++ ++|++|+.|++|++||+..     +.++..+.+|...  |.+++|+|  ++.+|++|
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~--v~~~~~s~--dg~~l~s~   83 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI--VQDCTLTA--DGAYALSA   83 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSC--EEEEEECT--TSSEEEEE
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCccc--EEEEEECC--CCCEEEEE
Confidence            5577899999999999999954 8999999999999999753     3456778888855  99999999  99999999


Q ss_pred             eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCc
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK  162 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (291)
                      +.|++|++||+++++...  .+..+......                                        ++|+|++..
T Consensus        84 s~D~~v~~wd~~~~~~~~--~~~~h~~~v~~----------------------------------------~~~~~~~~~  121 (319)
T 3frx_A           84 SWDKTLRLWDVATGETYQ--RFVGHKSDVMS----------------------------------------VDIDKKASM  121 (319)
T ss_dssp             ETTSEEEEEETTTTEEEE--EEECCSSCEEE----------------------------------------EEECTTSCE
T ss_pred             eCCCEEEEEECCCCCeeE--EEccCCCcEEE----------------------------------------EEEcCCCCE
Confidence            999999999999875432  11111111111                                        558898875


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCC---CCceEEEeecCCCcEEEEEcc
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS---QGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      ++  +|+.|+.|++||++. +++..+.        +|.    ..+.++. |.|...   ++. .+++++.|+.|++||++
T Consensus       122 l~--s~s~D~~i~vwd~~~-~~~~~~~--------~h~----~~v~~~~-~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~  184 (319)
T 3frx_A          122 II--SGSRDKTIKVWTIKG-QCLATLL--------GHN----DWVSQVR-VVPNEKADDDSV-TIISAGNDKMVKAWNLN  184 (319)
T ss_dssp             EE--EEETTSCEEEEETTS-CEEEEEC--------CCS----SCEEEEE-ECCC------CC-EEEEEETTSCEEEEETT
T ss_pred             EE--EEeCCCeEEEEECCC-CeEEEEe--------ccC----CcEEEEE-EccCCCCCCCcc-EEEEEeCCCEEEEEECC
Confidence            54  677899999999974 5566666        563    3566676 888532   233 79999999999999999


Q ss_pred             CCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      + .+....+.+|...|++++|+|++++|++++.||.|++||+++++.++++
T Consensus       185 ~-~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~  234 (319)
T 3frx_A          185 Q-FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL  234 (319)
T ss_dssp             T-TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             c-chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            8 7888889999999999999999999999999999999999999887654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.6e-38  Score=246.29  Aligned_cols=255  Identities=15%  Similarity=0.134  Sum_probs=180.0

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|+|||+.+++  .+..+.+|...  |.+++|++..++++|++|+.|++|+
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~--V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGP--VWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSC--EEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCcc--EEEEEeCCCCCCCEEEEEECCCEEE
Confidence            3567999999999999999999999999999999998774  46678888855  9999998622378999999999999


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeeccc-CccceeccCCCCceeeecccCcc--ccccCCCCCC----cccCCCCC-
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGET--VDTDSLCDSK----DDVPAEGP-  161 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~-  161 (291)
                      +||+++++......+..+........+.+.. ..........+...+|++.....  ....+.+|..    ++|+|+.. 
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            9999876432111111223333444444432 12233444556677787765432  2334445544    78888731 


Q ss_pred             ---------------cEEEEecCCcCeEEEEeCCCc---ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCC-Cce
Q 022870          162 ---------------KYMAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ-GFV  222 (291)
Q Consensus       162 ---------------~~~~~~g~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-g~~  222 (291)
                                     .+++ +|+.|+.|++||++..   ++...+.        +|    ...+.+++ |+|++.. +. 
T Consensus       165 ~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~~~l~--------~h----~~~V~~v~-~sp~~~~~~~-  229 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEEQKLE--------AH----SDWVRDVA-WAPSIGLPTS-  229 (316)
T ss_dssp             ------CCSCCCCCCCBEE-CCBTTSBCCEEEECTTSCEEEEECCB--------CC----SSCEEEEE-CCCCSSCSCC-
T ss_pred             ccccccccccCccccceEE-EecCCCeEEEEEeCCCCccceeeecc--------cC----CCceEEEE-ecCCCCCCCc-
Confidence                           2344 7888999999999755   3444555        66    34677887 9998421 23 


Q ss_pred             EEEeecCCCcEEEEEccCCC---CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          223 NVLAGYEDGSILVWDIRNPG---IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      +|++|+.||.|++||+++..   .....+..|...|++++|+|++++|++++.||.|++|+...
T Consensus       230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            89999999999999997621   12345677899999999999999999999999999999863

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.6e-37  Score=240.30  Aligned_cols=255  Identities=19%  Similarity=0.298  Sum_probs=199.1

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .+..++.+|.++|++++|+|++++|++|+.||.|++|++.+++....+..|...  |.+++|+|  ++++|++++.|+.|
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~s~~~d~~i   89 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--ISDVAWSS--DSNLLVSASDDKTL   89 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECT--TSSEEEEEETTSEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCc--eEEEEEcC--CCCEEEEECCCCEE
Confidence            457788999999999999999999999999999999999999999999888855  99999999  99999999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (291)
                      ++||+++++...  .+..+........+.+... ........+...+|++....... .+..|..    ++|+|++..++
T Consensus        90 ~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~  165 (312)
T 4ery_A           90 KIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK-TLPAHSDPVSAVHFNRDGSLIV  165 (312)
T ss_dssp             EEEETTTCCEEE--EEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEECCCCcEEE--EEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEE-EecCCCCcEEEEEEcCCCCEEE
Confidence            999999876533  2223333444444444322 22334455677888887665433 3344444    88999987554


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                        +++.|+.|++||+++++.+..+..       .+    ...+..+. |+|+   ++ +|++++.||.|++||+++ ++.
T Consensus       166 --~~~~d~~i~~wd~~~~~~~~~~~~-------~~----~~~~~~~~-~~~~---~~-~l~~~~~d~~i~iwd~~~-~~~  226 (312)
T 4ery_A          166 --SSSYDGLCRIWDTASGQCLKTLID-------DD----NPPVSFVK-FSPN---GK-YILAATLDNTLKLWDYSK-GKC  226 (312)
T ss_dssp             --EEETTSCEEEEETTTCCEEEEECC-------SS----CCCEEEEE-ECTT---SS-EEEEEETTTEEEEEETTT-TEE
T ss_pred             --EEeCCCcEEEEECCCCceeeEEec-------cC----CCceEEEE-ECCC---CC-EEEEEcCCCeEEEEECCC-CcE
Confidence              566799999999999988777652       22    33456676 9998   44 899999999999999998 888


Q ss_pred             eeeccccccceeEE--Ee-ecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          245 LTAMKVHLEPVLCL--SI-DESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       245 ~~~~~~h~~~v~~~--~~-~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +..+.+|...+..+  .+ .+++.+|++|+.||.|++||+++++++..+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  275 (312)
T 4ery_A          227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL  275 (312)
T ss_dssp             EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE
T ss_pred             EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh
Confidence            88888887654433  33 467889999999999999999999887654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.7e-37  Score=241.94  Aligned_cols=246  Identities=15%  Similarity=0.233  Sum_probs=187.7

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .++.++++|...|++++|+|++.+|++|+.|++|++||+.+++++..+.+|...  |.+++|+|  ++.+|++|+.|++|
T Consensus        56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~s~s~D~~i  131 (319)
T 3frx_A           56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD--VMSVDIDK--KASMIISGSRDKTI  131 (319)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEECT--TSCEEEEEETTSCE
T ss_pred             ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc--EEEEEEcC--CCCEEEEEeCCCeE
Confidence            356789999999999999999999999999999999999999999999999855  99999999  99999999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccC-----ccceeccCCCCceeeecccCccccccCCCCCC----cccCCC
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-----PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  159 (291)
                      ++||++.... .  .+..+........+.+...     .........+....|++...... ..+.+|..    ++|+|+
T Consensus       132 ~vwd~~~~~~-~--~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~~sp~  207 (319)
T 3frx_A          132 KVWTIKGQCL-A--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPD  207 (319)
T ss_dssp             EEEETTSCEE-E--EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE-EEECCCCSCEEEEEECTT
T ss_pred             EEEECCCCeE-E--EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh-eeecCCCCcEEEEEEcCC
Confidence            9999975421 1  1112222233333332211     12334445566778888765433 33455655    899999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      +..++  +|+.|+.|++||+++++.+..+.        .+     ..+.+++ |+|+   +. +|++++.+ .+++|++.
T Consensus       208 g~~l~--s~~~dg~i~iwd~~~~~~~~~~~--------~~-----~~v~~~~-~sp~---~~-~la~~~~~-~i~v~~~~  266 (319)
T 3frx_A          208 GTLIA--SAGKDGEIMLWNLAAKKAMYTLS--------AQ-----DEVFSLA-FSPN---RY-WLAAATAT-GIKVFSLD  266 (319)
T ss_dssp             SSEEE--EEETTCEEEEEETTTTEEEEEEE--------CC-----SCEEEEE-ECSS---SS-EEEEEETT-EEEEEEET
T ss_pred             CCEEE--EEeCCCeEEEEECCCCcEEEEec--------CC-----CcEEEEE-EcCC---CC-EEEEEcCC-CcEEEEeC
Confidence            97554  67779999999999999888887        22     3577787 9998   44 77777654 59999998


Q ss_pred             CCCCceeecc--------ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          240 NPGIPLTAMK--------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       240 ~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      . ...+..+.        .|...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus       267 ~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          267 P-QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             T-EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             c-CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            6 54444332        45678999999999999999999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.5e-36  Score=237.63  Aligned_cols=252  Identities=16%  Similarity=0.297  Sum_probs=198.0

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      ..+....+.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+..|...  |.+++|+|  ++++|++++.|+
T Consensus        54 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~s~~~d~  129 (312)
T 4ery_A           54 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNP--QSNLIVSGSFDE  129 (312)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECS--SSSEEEEEETTS
T ss_pred             CcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC--EEEEEEcC--CCCEEEEEeCCC
Confidence            34667889999999999999999999999999999999999999999999988855  99999999  999999999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCc
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  162 (291)
                      .|++||+++++...  .+..+........+.+... ........+...+|++............+..    ++|+|+++.
T Consensus       130 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (312)
T 4ery_A          130 SVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY  206 (312)
T ss_dssp             CEEEEETTTCCEEE--EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE
T ss_pred             cEEEEECCCCEEEE--EecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE
Confidence            99999999876533  2222333444444444322 2233445567788888776655444433433    889999976


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                      ++  +++.|+.|++||+++++.+..+.        +|.....  +.... |.+.  ++. +|++|+.||.|++||+++ +
T Consensus       207 l~--~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~--~~~~~-~~~~--~~~-~l~sg~~dg~i~vwd~~~-~  269 (312)
T 4ery_A          207 IL--AATLDNTLKLWDYSKGKCLKTYT--------GHKNEKY--CIFAN-FSVT--GGK-WIVSGSEDNLVYIWNLQT-K  269 (312)
T ss_dssp             EE--EEETTTEEEEEETTTTEEEEEEC--------SSCCSSS--CCCEE-EECS--SSC-EEEECCTTSCEEEEETTT-C
T ss_pred             EE--EEcCCCeEEEEECCCCcEEEEEE--------ecCCceE--EEEEE-EEeC--CCc-EEEEECCCCEEEEEECCC-c
Confidence            65  56679999999999999888887        5544322  22222 4433  144 899999999999999998 8


Q ss_pred             CceeeccccccceeEEEeecCCCeeEEec--CCCeEEEEEcC
Q 022870          243 IPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLD  282 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~dg~i~vw~~~  282 (291)
                      +.+..+.+|...|.+++|+|++++|++++  .|+.|++|+.+
T Consensus       270 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          270 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            88999999999999999999999999986  69999999975

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.2e-37  Score=244.66  Aligned_cols=249  Identities=16%  Similarity=0.203  Sum_probs=181.0

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .+...+.+|...|++++|+|++.++++|+.|++|++||+.+++.+..+.+|...  |.+++|+|  ++++|++++.|++|
T Consensus        67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~--v~~v~~sp--~~~~l~s~~~d~~i  142 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE--VYSVAFSP--DNRQILSAGAEREI  142 (343)
T ss_dssp             EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSC--EEEEEECS--STTEEEEEETTSCE
T ss_pred             cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc--EEEEEECC--CCCEEEEEcCCCEE
Confidence            356788999999999999999999999999999999999999999999999855  99999999  99999999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccC---------ccceeccCCCCceeeecccCccccccCCCCCC----cc
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE---------PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DD  155 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  155 (291)
                      ++||+.............+........+.+...         .........+...+|+..  ......+.+|..    ++
T Consensus       143 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~  220 (343)
T 2xzm_R          143 KLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLS  220 (343)
T ss_dssp             EEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEE
T ss_pred             EEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEE
Confidence            999997432211000112222334444443321         122233344556666632  222233445555    89


Q ss_pred             cCCCCCcEEEEecCCcCeEEEEeCCCc-ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870          156 VPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (291)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (291)
                      |+|+++.++  +|+.|+.|++||++.. .....+..             ...+.+++ |+|+   ++ +++ ++.|+.|+
T Consensus       221 ~s~~g~~l~--sgs~dg~v~iwd~~~~~~~~~~~~~-------------~~~v~~v~-~sp~---~~-~la-~~~d~~v~  279 (343)
T 2xzm_R          221 ISPNGKYIA--TGGKDKKLLIWDILNLTYPQREFDA-------------GSTINQIA-FNPK---LQ-WVA-VGTDQGVK  279 (343)
T ss_dssp             ECTTSSEEE--EEETTCEEEEEESSCCSSCSEEEEC-------------SSCEEEEE-ECSS---SC-EEE-EEESSCEE
T ss_pred             ECCCCCEEE--EEcCCCeEEEEECCCCcccceeecC-------------CCcEEEEE-ECCC---CC-EEE-EECCCCEE
Confidence            999997655  6777999999999543 34444431             22477787 9998   43 555 45688899


Q ss_pred             EEEccCCCCcee--ecc-----------ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          235 VWDIRNPGIPLT--AMK-----------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       235 vwd~~~~~~~~~--~~~-----------~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      +||+.+ .+...  .+.           +|...|++++|+|++++|++|+.||.|++|+++++.
T Consensus       280 iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          280 IFNLMT-QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             EEESSS-CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             EEEeCC-CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            999987 44332  332           688899999999999999999999999999987653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3e-36  Score=239.93  Aligned_cols=246  Identities=16%  Similarity=0.194  Sum_probs=194.0

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      .+.+..+..|...|.+++|+|++++|++|+.|+.|++||+.++    .....+.+|...  |.++.|++  + ..+++++
T Consensus        87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~--~-~~l~s~s  161 (340)
T 1got_B           87 TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY--LSCCRFLD--D-NQIVTSS  161 (340)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSC--EEEEEEEE--T-TEEEEEE
T ss_pred             CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCcc--EEEEEECC--C-CcEEEEE
Confidence            4667788999999999999999999999999999999999865    456667788755  99999998  6 5699999


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCC
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  159 (291)
                      .|++|++||+++++...  .+..+........+.+... ........+...+|++....... .+.+|..    ++|+|+
T Consensus       162 ~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~-~~~~h~~~v~~v~~~p~  237 (340)
T 1got_B          162 GDTTCALWDIETGQQTT--TFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQ-TFTGHESDINAICFFPN  237 (340)
T ss_dssp             TTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEE-EECCCSSCEEEEEECTT
T ss_pred             CCCcEEEEECCCCcEEE--EEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEE-EEcCCcCCEEEEEEcCC
Confidence            99999999999876533  2222333444444444322 23344456678888887665433 3455555    899999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      +..++  +|+.|+.|++||+++++.+..+..        + . ....+.++. |+|+   |+ +|++|+.||.|++||+.
T Consensus       238 ~~~l~--s~s~d~~v~iwd~~~~~~~~~~~~--------~-~-~~~~v~~~~-~s~~---g~-~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          238 GNAFA--TGSDDATCRLFDLRADQELMTYSH--------D-N-IICGITSVS-FSKS---GR-LLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             SSEEE--EEETTSCEEEEETTTTEEEEEECC--------T-T-CCSCEEEEE-ECTT---SS-EEEEEETTSEEEEEETT
T ss_pred             CCEEE--EEcCCCcEEEEECCCCcEEEEEcc--------C-C-cccceEEEE-ECCC---CC-EEEEECCCCeEEEEEcc
Confidence            97554  677799999999999887776652        1 1 123567787 9998   44 99999999999999999


Q ss_pred             CCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      + .+.+..+.+|...|++++|+|++.+|++|+.||.|++||
T Consensus       301 ~-~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          301 K-ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             T-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             c-CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            8 888899999999999999999999999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-36  Score=238.45  Aligned_cols=251  Identities=18%  Similarity=0.192  Sum_probs=194.4

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .+++..+.+|..+|.+++|+|++++|++|+.|++|++||+.+++++..+..|...  |.+++|+|  ++.+|++|+.|++
T Consensus        45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~sgs~D~~  120 (304)
T 2ynn_A           45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY--IRSIAVHP--TKPYVLSGSDDLT  120 (304)
T ss_dssp             TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECS--SSSEEEEEETTSC
T ss_pred             CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc--EEEEEEcC--CCCEEEEECCCCe
Confidence            3567889999999999999999999999999999999999999999999999855  99999999  9999999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCC--CCC
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA--EGP  161 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~  161 (291)
                      |++||++++.... ..+..+........+.+............+...+|++............+..    ++|+|  ++.
T Consensus       121 v~lWd~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (304)
T 2ynn_A          121 VKLWNWENNWALE-QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP  199 (304)
T ss_dssp             EEEEEGGGTTEEE-EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC
T ss_pred             EEEEECCCCcchh-hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC
Confidence            9999998763221 0222333444445554433333444555667888888665544333334433    66766  444


Q ss_pred             cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                      . ++ +|+.|+.|++||+++++++..+.        +|..    .+.++. |+|++   . +|++|+.||.|++||+++ 
T Consensus       200 ~-l~-s~s~D~~i~iWd~~~~~~~~~~~--------~h~~----~v~~~~-~~p~~---~-~l~s~s~Dg~i~iWd~~~-  259 (304)
T 2ynn_A          200 Y-MI-TASDDLTIKIWDYQTKSCVATLE--------GHMS----NVSFAV-FHPTL---P-IIISGSEDGTLKIWNSST-  259 (304)
T ss_dssp             E-EE-EEETTSEEEEEETTTTEEEEEEE--------CCSS----CEEEEE-ECSSS---S-EEEEEETTSCEEEEETTT-
T ss_pred             E-EE-EEcCCCeEEEEeCCCCccceeeC--------CCCC----CEEEEE-ECCCC---C-EEEEEcCCCeEEEEECCC-
Confidence            3 33 67779999999999999999988        7743    566776 99984   3 899999999999999998 


Q ss_pred             CCceeeccccccceeEEEeecCCC--eeEEecCCCeEEEEEcCCC
Q 022870          242 GIPLTAMKVHLEPVLCLSIDESCN--GGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vw~~~~~  284 (291)
                      ++.+..+..|...+++++|+|++.  ++++|+.| .+.+|++...
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~  303 (304)
T 2ynn_A          260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND  303 (304)
T ss_dssp             CCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred             CceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence            889999999999999999988875  46777655 5888887653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.4e-36  Score=259.55  Aligned_cols=250  Identities=15%  Similarity=0.153  Sum_probs=193.4

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~   95 (291)
                      .+++.+.+++|+|+|++|++++ ++.|++||+.+++....+.+|...  |++++|+|  +|++|++|+.|++|+|||+.+
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~--v~~~~~sp--dg~~lasg~~d~~v~lWd~~~   90 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQ--TTVAKTSP--SGYYCASGDVHGNVRIWDTTQ   90 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSC--EEEEEECT--TSSEEEEEETTSEEEEEESSS
T ss_pred             cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCc--eEEEEECC--CCcEEEEEeCCCCEEEeECCC
Confidence            4578889999999999999987 569999999988888999999865  99999999  999999999999999999976


Q ss_pred             CCCCCCCccccccceEEEEEeecccCccceeccCCC-CceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCC
Q 022870           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE-PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQ  170 (291)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~  170 (291)
                      ++......+..+........+++............. ...++..+.. .....+.+|..    ++|+|+++..++ +|+.
T Consensus        91 ~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~~~~l~-s~s~  168 (611)
T 1nr0_A           91 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPFRII-SGSD  168 (611)
T ss_dssp             TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSCEEE-EEET
T ss_pred             CcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC-CCcceecCCCCCceEEEECCCCCeEEE-EEeC
Confidence            543221122233445555555555433332222211 1233333322 23345667766    899999976555 6777


Q ss_pred             cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc-
Q 022870          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-  249 (291)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-  249 (291)
                      |++|++||.+++++...+.        +|.    ..+.+++ |+|+   |+ +|++|+.|+.|++||+.+ ++.+..+. 
T Consensus       169 D~~v~lwd~~~~~~~~~l~--------~H~----~~V~~v~-fspd---g~-~las~s~D~~i~lwd~~~-g~~~~~~~~  230 (611)
T 1nr0_A          169 DNTVAIFEGPPFKFKSTFG--------EHT----KFVHSVR-YNPD---GS-LFASTGGDGTIVLYNGVD-GTKTGVFED  230 (611)
T ss_dssp             TSCEEEEETTTBEEEEEEC--------CCS----SCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-CCEEEECBC
T ss_pred             CCeEEEEECCCCeEeeeec--------ccc----CceEEEE-ECCC---CC-EEEEEECCCcEEEEECCC-CcEeeeecc
Confidence            9999999999988888887        674    4677887 9998   44 999999999999999988 77777763 


Q ss_pred             ------ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          250 ------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       250 ------~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                            +|.+.|.+++|+|++++|++++.|++|++||+++++.+.++
T Consensus       231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~  277 (611)
T 1nr0_A          231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  277 (611)
T ss_dssp             TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence                  79999999999999999999999999999999998877643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-36  Score=244.77  Aligned_cols=238  Identities=22%  Similarity=0.371  Sum_probs=182.6

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~   99 (291)
                      .|++++|+|++++|++|+.|++|++||+.+++.+..+.+|...  |.+++|+|  ++.+|++++.|++|++||+++++..
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~  200 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD--IYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCS  200 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECT--TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCC--EEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeE
Confidence            4999999999999999999999999999999999999999855  99999999  9999999999999999999987643


Q ss_pred             CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcccccc------CCCCCC----cccCCCCCcEEEEecC
Q 022870          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD------SLCDSK----DDVPAEGPKYMAVAGE  169 (291)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~~~~~g~  169 (291)
                      .  .+.. ........+.+............+...+|++.........      ..+|..    ++|+|++..++  +|+
T Consensus       201 ~--~~~~-~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~--s~s  275 (393)
T 1erj_A          201 L--TLSI-EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV--SGS  275 (393)
T ss_dssp             E--EEEC-SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE--EEE
T ss_pred             E--EEEc-CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE--EEe
Confidence            2  1111 1223333333322233344455667788887765533221      134554    89999997654  677


Q ss_pred             CcCeEEEEeCCCcce------------eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870          170 QLSEVEIWDLNTAER------------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (291)
Q Consensus       170 ~d~~i~~wd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (291)
                      .|+.|++||+++...            ...+.        +|    ...+.++. |+|+   ++ +|++|+.||.|++||
T Consensus       276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~~~~---~~-~l~sgs~D~~v~iwd  338 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI--------GH----KDFVLSVA-TTQN---DE-YILSGSKDRGVLFWD  338 (393)
T ss_dssp             TTSEEEEEEC---------------CEEEEEE--------CC----SSCEEEEE-ECGG---GC-EEEEEETTSEEEEEE
T ss_pred             CCCEEEEEECCCCCCcccccCCCCCcceEEEe--------cc----cCcEEEEE-ECCC---CC-EEEEEeCCCeEEEEE
Confidence            799999999986432            23333        45    34577776 9998   44 999999999999999


Q ss_pred             ccCCCCceeeccccccceeEEEeec------CCCeeEEecCCCeEEEEEcCCC
Q 022870          238 IRNPGIPLTAMKVHLEPVLCLSIDE------SCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      +++ ++++..+.+|...|.+++|++      ++++|++|+.||+|++|+++..
T Consensus       339 ~~~-~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          339 KKS-GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             TTT-CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCC-CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            998 889999999999999999865      6889999999999999998654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=241.79  Aligned_cols=256  Identities=14%  Similarity=0.173  Sum_probs=185.0

Q ss_pred             CceEEecCCcc-ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEE---EeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            9 DPVAVLRGHRA-SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS---SWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         9 ~~~~~l~~h~~-~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      +++.++.+|.+ .|++++|+|+|++||+|+.|++|+|||++++.....   ..+|.  ..|.+++|+|  ++++|++|+.
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~sp--~g~~l~s~s~   81 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ--RTVRKVAWSP--CGNYLASASF   81 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCS--SCEEEEEECT--TSSEEEEEET
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccC--CcEEEEEECC--CCCEEEEEEC
Confidence            56788999988 999999999999999999999999999988764322   24566  4599999999  9999999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc--ccccCCCCCC----cccCC
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--VDTDSLCDSK----DDVPA  158 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~  158 (291)
                      |++|++||+..........+..+........+++... ........+...+|++.....  ....+.+|..    ++|+|
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP  160 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred             CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence            9999999998764321112223334455555555432 223344456778888865532  2334556655    89999


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCCcce--eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (291)
                      ++..++  +|+.|+.|++||.++++.  ...+.        +|    ...+.++. |+|+   |+ +|++|+.||.|++|
T Consensus       161 ~~~~l~--s~s~d~~i~~w~~~~~~~~~~~~~~--------~h----~~~v~~l~-~sp~---g~-~l~s~s~D~~v~iW  221 (345)
T 3fm0_A          161 SQELLA--SASYDDTVKLYREEEDDWVCCATLE--------GH----ESTVWSLA-FDPS---GQ-RLASCSDDRTVRIW  221 (345)
T ss_dssp             SSSCEE--EEETTSCEEEEEEETTEEEEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEE
T ss_pred             CCCEEE--EEeCCCcEEEEEecCCCEEEEEEec--------CC----CCceEEEE-ECCC---CC-EEEEEeCCCeEEEe
Confidence            997655  677799999999988753  34555        56    34677787 9998   44 89999999999999


Q ss_pred             EccCCCC-------------------------------------------------------------c-----eeeccc
Q 022870          237 DIRNPGI-------------------------------------------------------------P-----LTAMKV  250 (291)
Q Consensus       237 d~~~~~~-------------------------------------------------------------~-----~~~~~~  250 (291)
                      |...++.                                                             +     .....+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  301 (345)
T 3fm0_A          222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA  301 (345)
T ss_dssp             EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTS
T ss_pred             ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccc
Confidence            8632110                                                             0     011246


Q ss_pred             cccceeEEEeecCC-CeeEEecCCCeEEEEEcCCCceee
Q 022870          251 HLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       251 h~~~v~~~~~~~~~-~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      |...|++++|+|++ .+||+||.||.|++|++++++.+.
T Consensus       302 h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             SSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence            88899999999987 489999999999999999887654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.8e-36  Score=242.59  Aligned_cols=253  Identities=13%  Similarity=0.152  Sum_probs=182.9

Q ss_pred             ecCCccceeEEEEcCCCCEEEEecC------CCeEEEEeCCCCeEE----EEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           14 LRGHRASVTDVCFHQTKPILFAGTT------GGELRIWDTVQHRTV----SSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      ...|+..|++++|+|||++|++|+.      |+.|++|+..++...    .....|.  ..|.+++|+|  + ..+++++
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~--~~V~~~~~s~--d-~~~l~~s  112 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTE--AGVTDVAWVS--E-KGILVAS  112 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECS--SCEEEEEEET--T-TEEEEEE
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCC--CCEEEEEEcC--C-CCEEEEE
Confidence            3579999999999999999999997      788999998776432    2233455  4499999999  7 4677788


Q ss_pred             CCCeEEEEECCCCCCCCCCcccc--ccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccC
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (291)
                      .||+|++||+.+++.........  +........+++.... .......+...+|++....... .+.+|..    ++|+
T Consensus       113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~sgs~dg~v~iwd~~~~~~~~-~~~~h~~~v~~v~~s  190 (357)
T 4g56_B          113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ-AVSGGKDFSVKVWDLSQKAVLK-SYNAHSSEVNCVAAC  190 (357)
T ss_dssp             TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEEC
T ss_pred             CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEE-EEcCCCCCEEEEEEc
Confidence            99999999999876543222222  2334444445443322 2334455667888887665433 3455655    8899


Q ss_pred             CCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (291)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (291)
                      |++..+++ +++.|+.|++||++++++...+..        +  .....+.++. |+|++  +. +|++|+.|+.|++||
T Consensus       191 ~~~~~~~~-s~~~dg~v~~wd~~~~~~~~~~~~--------~--~~~~~v~~v~-~sp~~--~~-~la~g~~d~~i~~wd  255 (357)
T 4g56_B          191 PGKDTIFL-SCGEDGRILLWDTRKPKPATRIDF--------C--ASDTIPTSVT-WHPEK--DD-TFACGDETGNVSLVN  255 (357)
T ss_dssp             TTCSSCEE-EEETTSCEEECCTTSSSCBCBCCC--------T--TCCSCEEEEE-ECTTS--TT-EEEEEESSSCEEEEE
T ss_pred             cCCCceee-eeccCCceEEEECCCCceeeeeee--------c--cccccccchh-hhhcc--cc-eEEEeecccceeEEE
Confidence            99887666 455699999999999887766542        1  1244577787 99983  33 899999999999999


Q ss_pred             ccCCCCceeeccccccceeEEEeecCC-CeeEEecCCCeEEEEEcCCCceeee
Q 022870          238 IRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      +++ ++++..+.+|...|++++|+|++ ++|++|+.|++|+|||++++++++.
T Consensus       256 ~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          256 IKN-PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             SSC-GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CCC-CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence            998 88899999999999999999987 5789999999999999999988764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.3e-36  Score=255.16  Aligned_cols=259  Identities=13%  Similarity=0.154  Sum_probs=196.8

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC--eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      ++...++.+|.+.|++++|+|+|++||+|+.||+|+|||+.++  .....+..|...  |.+++|+|  ++.+|++++.+
T Consensus        49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~--v~~v~fs~--dg~~l~~~~~~  124 (611)
T 1nr0_A           49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP--VKDISWDS--ESKRIAAVGEG  124 (611)
T ss_dssp             SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSC--EEEEEECT--TSCEEEEEECC
T ss_pred             cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCc--eEEEEECC--CCCEEEEEECC
Confidence            4677889999999999999999999999999999999998654  345567777754  99999999  99999988865


Q ss_pred             ----CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccC
Q 022870           86 ----GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (291)
Q Consensus        86 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (291)
                          +.|++||..  +...  .+..+........+++................+|+....+. ...+.+|..    ++|+
T Consensus       125 ~~~~~~v~~wd~~--~~~~--~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~-~~~l~~H~~~V~~v~fs  199 (611)
T 1nr0_A          125 RERFGHVFLFDTG--TSNG--NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYN  199 (611)
T ss_dssp             SSCSEEEEETTTC--CBCB--CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-EEEECCCSSCEEEEEEC
T ss_pred             CCceeEEEEeeCC--CCcc--eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE-eeeeccccCceEEEEEC
Confidence                478888853  2222  23344445556666555433344555667778888765543 334667766    8999


Q ss_pred             CCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (291)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (291)
                      |+++.++  +|+.|+.|++||+.+++....+.... ....+|    ...+.++. |+|+   |+ +|++|+.|+.|++||
T Consensus       200 pdg~~la--s~s~D~~i~lwd~~~g~~~~~~~~~~-~~~~~h----~~~V~~v~-~spd---g~-~l~s~s~D~~v~lWd  267 (611)
T 1nr0_A          200 PDGSLFA--STGGDGTIVLYNGVDGTKTGVFEDDS-LKNVAH----SGSVFGLT-WSPD---GT-KIASASADKTIKIWN  267 (611)
T ss_dssp             TTSSEEE--EEETTSCEEEEETTTCCEEEECBCTT-SSSCSS----SSCEEEEE-ECTT---SS-EEEEEETTSEEEEEE
T ss_pred             CCCCEEE--EEECCCcEEEEECCCCcEeeeecccc-cccccc----CCCEEEEE-ECCC---CC-EEEEEeCCCeEEEEe
Confidence            9997544  67779999999999998887764210 000123    55788887 9998   44 899999999999999


Q ss_pred             ccCCCCce-------------------------------------------eeccccccceeEEEeecCCCeeEEecCCC
Q 022870          238 IRNPGIPL-------------------------------------------TAMKVHLEPVLCLSIDESCNGGISGGADQ  274 (291)
Q Consensus       238 ~~~~~~~~-------------------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  274 (291)
                      +++ ++.+                                           ..+.+|...|++++|+|++++|++++.|+
T Consensus       268 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~  346 (611)
T 1nr0_A          268 VAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG  346 (611)
T ss_dssp             TTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            986 4332                                           23457999999999999999999999999


Q ss_pred             eEEEEEcCCCceee
Q 022870          275 KIVLYNLDHSTVSH  288 (291)
Q Consensus       275 ~i~vw~~~~~~~~~  288 (291)
                      .|++||+++++...
T Consensus       347 ~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          347 HINSWDISTGISNR  360 (611)
T ss_dssp             CEEEEETTTCCEEE
T ss_pred             cEEEEECCCCceee
Confidence            99999999887654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.4e-36  Score=240.22  Aligned_cols=249  Identities=9%  Similarity=0.101  Sum_probs=183.5

Q ss_pred             cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC------------CeEEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus        15 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      ..|...|.+++|+|||++|++++ |+++++||...            +.....+ .+.  .+|.+++|+|  + +.|++|
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~-~~~--~~v~~~~~s~--d-~~l~~~   99 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGV-QTE--AGVADLTWVG--E-RGILVA   99 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEE-EES--SCEEEEEEET--T-TEEEEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeee-ccC--CCEEEEEEeC--C-CeEEEE
Confidence            35778899999999999999887 66778886210            1111111 233  4599999999  7 688999


Q ss_pred             eCCCeEEEEECCCCCCCCCCccc--cccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----ccc
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLT--IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV  156 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  156 (291)
                      +.||+|++||+++++........  .+........+++.... .......+...+|++...... ..+.+|..    ++|
T Consensus       100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~-l~sgs~d~~i~iwd~~~~~~~-~~~~~h~~~V~~~~~  177 (344)
T 4gqb_B          100 SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ-AVSGSKDICIKVWDLAQQVVL-SSYRAHAAQVTCVAA  177 (344)
T ss_dssp             ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEE
T ss_pred             ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEE-EEEcCcCCceEEEEe
Confidence            99999999999988754311111  22334444555544322 233445567888888776543 34566766    899


Q ss_pred             CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (291)
                      +|++..+++ +++.|+.|++||++++++...+...      .    ....+.++. |+|++  ++ +|++|+.||.|++|
T Consensus       178 ~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~------~----~~~~~~~~~-~~p~~--~~-~l~sg~~dg~v~~w  242 (344)
T 4gqb_B          178 SPHKDSVFL-SCSEDNRILLWDTRCPKPASQIGCS------A----PGYLPTSLA-WHPQQ--SE-VFVFGDENGTVSLV  242 (344)
T ss_dssp             CSSCTTEEE-EEETTSCEEEEETTSSSCEEECC--------------CCCEEEEE-ECSSC--TT-EEEEEETTSEEEEE
T ss_pred             cCCCCCcee-eeccccccccccccccceeeeeecc------e----eeccceeee-ecCCC--Cc-ceEEeccCCcEEEE
Confidence            999988776 5667999999999999988877521      1    123466776 99973  33 89999999999999


Q ss_pred             EccCCCCceeeccccccceeEEEeecCC-CeeEEecCCCeEEEEEcCCCceee
Q 022870          237 DIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      |+++ ++++..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++++.
T Consensus       243 d~~~-~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~  294 (344)
T 4gqb_B          243 DTKS-TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR  294 (344)
T ss_dssp             ESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred             ECCC-CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence            9998 88999999999999999999997 578999999999999999988764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.1e-35  Score=239.92  Aligned_cols=250  Identities=14%  Similarity=0.216  Sum_probs=188.8

Q ss_pred             CceEE--ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            9 DPVAV--LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         9 ~~~~~--l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      +....  +.+|...|++++|+|+|++|++|+.||+|+|||+++++++..+.+|...  +.++++++    ..|++|+.|+
T Consensus       136 ~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~--v~~~s~~~----~~l~sgs~d~  209 (420)
T 4gga_A          136 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR--VGSLSWNS----YILSSGSRSG  209 (420)
T ss_dssp             CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEET----TEEEEEETTS
T ss_pred             CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc--eEEEeeCC----CEEEEEeCCC
Confidence            44444  4578889999999999999999999999999999999999999999855  99888765    7999999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccc---cccCCCCCC----cccCCC
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV---DTDSLCDSK----DDVPAE  159 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~  159 (291)
                      .+++||......... .+..+........+.+... ........+...+|+.......   ......|..    ++|+|.
T Consensus       210 ~i~~~d~~~~~~~~~-~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~  287 (420)
T 4gga_A          210 HIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW  287 (420)
T ss_dssp             EEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTT
T ss_pred             ceeEeeecccceeeE-EecccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCC
Confidence            999999887543210 1122222333333333222 2233344456667776654422   222334443    889999


Q ss_pred             CCcEEEE-ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe--ecCCCcEEEE
Q 022870          160 GPKYMAV-AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSILVW  236 (291)
Q Consensus       160 ~~~~~~~-~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~--g~~dg~i~vw  236 (291)
                      +..++++ +|+.|+.|++||++++++...+.        .+     ..+.++. |+|++   . .+++  |+.||.|+||
T Consensus       288 ~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--------~~-----~~v~~~~-~~~~~---~-~lv~~sg~~d~~I~iw  349 (420)
T 4gga_A          288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVD--------AH-----SQVCSIL-WSPHY---K-ELISGHGFAQNQLVIW  349 (420)
T ss_dssp             CTTEEEEEECTTTCEEEEEETTTTEEEEEEE--------CS-----SCEEEEE-EETTT---T-EEEEEECTTTCCEEEE
T ss_pred             cccEEEEEeecCCCEEEEEeCCccccceeec--------cc-----cceeeee-ecCCC---C-eEEEEEecCCCEEEEE
Confidence            8888765 46789999999999999888887        23     3456665 99873   3 4444  4589999999


Q ss_pred             EccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      |+.+ ++++..+.+|.+.|++++|+|+|.+|+|||.|++|+|||+....
T Consensus       350 d~~~-~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          350 KYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             ETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             ECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            9998 89999999999999999999999999999999999999987643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=234.28  Aligned_cols=266  Identities=15%  Similarity=0.145  Sum_probs=180.2

Q ss_pred             CCCCCCceEEecC--Ccc--ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeE
Q 022870            4 RPPPPDPVAVLRG--HRA--SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV   79 (291)
Q Consensus         4 ~~~~~~~~~~l~~--h~~--~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l   79 (291)
                      +..|..|.++|.+  ..+  -.++|+||+++ +||+| .|++|+|||+++++++..+..+.+...|.+++|+|  ++++|
T Consensus         7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~--~~~~l   82 (318)
T 4ggc_A            7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYL   82 (318)
T ss_dssp             CCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEE
T ss_pred             cccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC--CCCEE
Confidence            4466777788864  233  25789999986 77766 58999999999999998887766556799999999  99999


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cc
Q 022870           80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DD  155 (291)
Q Consensus        80 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  155 (291)
                      ++|+.||+|++||+++++...    ....+......+..... .............+...........+.+|..    ++
T Consensus        83 ~sgs~Dg~v~iw~~~~~~~~~----~~~~h~~~~~~~~~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (318)
T 4ggc_A           83 AVGTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR  157 (318)
T ss_dssp             EEEETTSEEEEEETTTTEEEE----EEECCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             EEEECCCcEEEeecCCceeEE----EecCccceEEEeecCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE
Confidence            999999999999999887543    22222222222222221 1222233334444555544444445555555    78


Q ss_pred             cCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccc-----------cCCCC--------CCC----------------
Q 022870          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS-----------CGGSP--------NFS----------------  200 (291)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~-----------~~~~~--------~~~----------------  200 (291)
                      +++++..++  +++.|+.|++||+++++.........           ..+..        +..                
T Consensus       158 ~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~  235 (318)
T 4ggc_A          158 WAPDGRHLA--SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS  235 (318)
T ss_dssp             ECTTSSEEE--EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred             EcCCCCEEE--EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence            889987655  66779999999998765321110000           00000        000                


Q ss_pred             -CCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEE
Q 022870          201 -SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY  279 (291)
Q Consensus       201 -~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  279 (291)
                       ......+..+. |.|.+.  ..++++|+.|+.|++||+++ ++++..+.+|.+.|++++|+|++++|+|||.||+|+||
T Consensus       236 ~~~~~~~v~~~~-~~~~~~--~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          236 AVDAHSQVCSIL-WSPHYK--ELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             EEECSSCEEEEE-EETTTT--EEEEEECTTTCCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             cccceeeeeeee-eccccc--ceEEEEEcCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence             00011234444 777632  21233456899999999998 89999999999999999999999999999999999999


Q ss_pred             EcCCC
Q 022870          280 NLDHS  284 (291)
Q Consensus       280 ~~~~~  284 (291)
                      |+.+.
T Consensus       312 d~~~~  316 (318)
T 4ggc_A          312 RCFEL  316 (318)
T ss_dssp             CCSCC
T ss_pred             ECCCC
Confidence            99764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-35  Score=235.07  Aligned_cols=249  Identities=14%  Similarity=0.154  Sum_probs=192.2

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      ...+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..|...  |.+++|+|  ++++|++++.||.|++
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGT--IWSIDVDC--FTKYCVTGSADYSIKL  100 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSC--EEEEEECT--TSSEEEEEETTTEEEE
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCc--EEEEEEcC--CCCEEEEEeCCCeEEE
Confidence            4568899999999999999999999999999999999999999999988855  99999999  9999999999999999


Q ss_pred             EECCCCCCCCCCccccccceEEEEEeecc---------------------------------------------------
Q 022870           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLV---------------------------------------------------  119 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------  119 (291)
                      ||+.+++....  +. .........+.+.                                                   
T Consensus       101 wd~~~~~~~~~--~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B          101 WDVSNGQCVAT--WK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             EETTTCCEEEE--EE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             EECCCCcEEEE--ee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence            99988765331  11 0111111111110                                                   


Q ss_pred             -----cCcc---ceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeE
Q 022870          120 -----KEPY---ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR  187 (291)
Q Consensus       120 -----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~  187 (291)
                           ..+.   .......+...+|++.........+..|..    ++|+|++..++  +++.|+.|++||+++++.+..
T Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~d~~i~v~d~~~~~~~~~  255 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI--TSSRDTNSFLVDVSTLQVLKK  255 (369)
T ss_dssp             EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTCCEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEE--EecCCceEEEEECCCCceeee
Confidence                 0011   112223344566676663333444444544    89999987655  566689999999999998888


Q ss_pred             ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC--------------cEEEEEccCCCCceeecccccc
Q 022870          188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--------------SILVWDIRNPGIPLTAMKVHLE  253 (291)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--------------~i~vwd~~~~~~~~~~~~~h~~  253 (291)
                      +..             ...+..+. |+|+   ++ ++++++.++              .+++||+.+ ++++..+.+|..
T Consensus       256 ~~~-------------~~~~~~~~-~~~~---~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~  316 (369)
T 3zwl_B          256 YET-------------DCPLNTAV-ITPL---KE-FIILGGGQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHFG  316 (369)
T ss_dssp             EEC-------------SSCEEEEE-ECSS---SS-EEEEEECCC-------------CEEEEEETTT-CCEEEEEECCSS
T ss_pred             ecC-------------CCCceeEE-ecCC---Cc-eEEEeecCCCceEEEEecCCCcceeEEEecCC-CcchhheecccC
Confidence            762             33566776 9998   44 888888887              899999998 889999999999


Q ss_pred             ceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      .|++++|+|++++|++++.||.|++|+++++.+.
T Consensus       317 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  350 (369)
T 3zwl_B          317 PLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD  350 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence            9999999999999999999999999999876554

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.5e-35  Score=233.98  Aligned_cols=264  Identities=15%  Similarity=0.130  Sum_probs=191.5

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      ....+.+|.+.|++++|+|++++|++|+.||.|++||+.++    +....+..|...  |.+++|+|..++++|++++.|
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSS--IVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSC--EEEEEECCGGGCSEEEEEETT
T ss_pred             ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCc--EEEEEEcCCCCCCEEEEEcCC
Confidence            34567899999999999999999999999999999999876    466677778755  999999984337899999999


Q ss_pred             CeEEEEECCCCCCCC-----CCcccc--ccceEEEEEeeccc-CccceeccCCCCceeeecccCcccccc----------
Q 022870           86 GTVKCWDIENGGLSS-----NPSLTI--KTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTD----------  147 (291)
Q Consensus        86 g~i~iwd~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  147 (291)
                      |.|++||+++++...     ++...+  +........+.+.. ..........+...+|++.........          
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            999999998764321     111222  22333444444331 222333445566778887665432211          


Q ss_pred             --CCCCCC----cccCCC---CCcEEEEecCCcCeEEEEeCCCcce--eeEecccccCCCCCCCCCcceeeeeEEEecCC
Q 022870          148 --SLCDSK----DDVPAE---GPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS  216 (291)
Q Consensus       148 --~~~~~~----~~~~~~---~~~~~~~~g~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  216 (291)
                        ...+..    ++|+|+   +. +++ +++.|+.+.+|+...++.  +..+.        +|    ...+.++. |+|+
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~h----~~~i~~~~-~~p~  225 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPE-KLA-VSALEQAIIYQRGKDGKLHVAAKLP--------GH----KSLIRSIS-WAPS  225 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCC-EEE-EEETTEEEEEEECTTSCEEEEEECC--------CC----CSCEEEEE-ECCC
T ss_pred             cccCCcccceeEEEeccCCCCCc-EEE-EecCCCcEEEEccCCCceeeeeecC--------CC----CcceeEEE-ECCC
Confidence              112222    888887   54 444 455689998888877765  44444        45    44677887 9998


Q ss_pred             CCCCceEEEeecCCCcEEEEEccCCC---------------------------------------------Cceeecccc
Q 022870          217 KSQGFVNVLAGYEDGSILVWDIRNPG---------------------------------------------IPLTAMKVH  251 (291)
Q Consensus       217 ~~~g~~~l~~g~~dg~i~vwd~~~~~---------------------------------------------~~~~~~~~h  251 (291)
                      +.....+|++|+.||.|++||+++..                                             +++..+.+|
T Consensus       226 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  305 (351)
T 3f3f_A          226 IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH  305 (351)
T ss_dssp             SSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT
T ss_pred             CCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence            42111289999999999999998621                                             456678889


Q ss_pred             ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ...|++++|+|++++|++++.||.|++|++++++.+.++
T Consensus       306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            999999999999999999999999999999998776654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-36  Score=242.94  Aligned_cols=259  Identities=16%  Similarity=0.162  Sum_probs=188.3

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCC--CCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      +++.++++|.+.|++++|+|++++|++|+.||.|++||+.  +++.+..+..|...  |.+++|++..++++|++++.||
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP--VWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC--EEEEEECCGGGCSEEEEEETTS
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCc--EEEEEeCCCCCCCEEEEeccCC
Confidence            5677899999999999999999999999999999999997  55677778888755  9999999822289999999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeeccc-CccceeccCCCCceeeecccCcc-ccccCCCCCC----cccCC--
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGET-VDTDSLCDSK----DDVPA--  158 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~--  158 (291)
                      .|++||+++++.........+........+.+.. ..........+...+|++..... ....+..|..    ++|+|  
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            9999999987521111222233344444444442 22334445566778888876632 2223344544    88999  


Q ss_pred             -----------CCCcEEEEecCCcCeEEEEeCCCccee----eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceE
Q 022870          159 -----------EGPKYMAVAGEQLSEVEIWDLNTAERC----TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (291)
Q Consensus       159 -----------~~~~~~~~~g~~d~~i~~wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  223 (291)
                                 ++.. ++ +|+.|+.|++||+++++..    ..+.        +|    ...+.++. |+|++..+. +
T Consensus       160 ~~~~~~~~~~~~~~~-l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~sp~~~~~~-~  223 (379)
T 3jrp_A          160 IEEDGEHNGTKESRK-FV-TGGADNLVKIWKYNSDAQTYVLESTLE--------GH----SDWVRDVA-WSPTVLLRS-Y  223 (379)
T ss_dssp             ----------CTTCE-EE-EEETTSCEEEEEEETTTTEEEEEEEEC--------CC----SSCEEEEE-ECCCCSSSE-E
T ss_pred             ccccccccCCCCCCE-EE-EEeCCCeEEEEEecCCCcceeeEEEEe--------cc----cCcEeEEE-ECCCCCCCC-e
Confidence                       4554 44 5667999999999876533    3344        44    44677887 999831123 9


Q ss_pred             EEeecCCCcEEEEEccCCCC----ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          224 VLAGYEDGSILVWDIRNPGI----PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       224 l~~g~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      |++++.||.|++||+++...    .+.....|...|++++|+|++++|++++.||.|++|+++.+.
T Consensus       224 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          224 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             EEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            99999999999999997321    223334588899999999999999999999999999998543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.9e-35  Score=237.36  Aligned_cols=256  Identities=20%  Similarity=0.254  Sum_probs=188.0

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC----------------CcceEEEEEeecCCCCeE
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA----------------AHGIVSVATGPSIGLNKV   79 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~l   79 (291)
                      +|.+.|++++|+|+|++|++|+ |+.+++|++.+++.+..+..+..                ...|.+++|+|  ++++|
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--dg~~l  138 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DGKFL  138 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT--TSSEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC--CCCEE
Confidence            6999999999999999999987 68999999999998887765431                12389999999  99999


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC---ccc
Q 022870           80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDV  156 (291)
Q Consensus        80 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  156 (291)
                      ++|+.|++|++||+++++...  .+..+........+.+.... .......+...+|++.......... .+..   ++|
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~  214 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVM--ILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAV  214 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEE--EEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEE
Confidence            999999999999999876533  22333444444555444332 2334445667788887665433221 2222   889


Q ss_pred             CC-CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870          157 PA-EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (291)
Q Consensus       157 ~~-~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (291)
                      +| ++. +++ +|+.|+.|++||+++++.+..+.... ....+|    ...+.++. |+|+   |+ +|++|+.||.|++
T Consensus       215 ~~~~~~-~l~-~~s~d~~v~iwd~~~~~~~~~~~~~~-~~~~~h----~~~v~~v~-~~~~---g~-~l~s~s~d~~v~~  282 (393)
T 1erj_A          215 SPGDGK-YIA-AGSLDRAVRVWDSETGFLVERLDSEN-ESGTGH----KDSVYSVV-FTRD---GQ-SVVSGSLDRSVKL  282 (393)
T ss_dssp             CSTTCC-EEE-EEETTSCEEEEETTTCCEEEEEC-------CCC----SSCEEEEE-ECTT---SS-EEEEEETTSEEEE
T ss_pred             ECCCCC-EEE-EEcCCCcEEEEECCCCcEEEeecccc-cCCCCC----CCCEEEEE-ECCC---CC-EEEEEeCCCEEEE
Confidence            99 554 444 56779999999999998877764210 000133    45678887 9998   44 8999999999999


Q ss_pred             EEccCC-----------CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          236 WDIRNP-----------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       236 wd~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ||+++.           +.+...+.+|...|.+++|++++.+|++|+.||.|++||+++++.+..+
T Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l  348 (393)
T 1erj_A          283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  348 (393)
T ss_dssp             EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Confidence            999752           2345567889999999999999999999999999999999998876543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.2e-36  Score=246.85  Aligned_cols=219  Identities=14%  Similarity=0.170  Sum_probs=165.8

Q ss_pred             CceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEE--EeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      +......+|...|+||+|+| ++.+||+|+.||+|+|||+.+++....  +.+|.  .+|++|+|+|. ++++|++|+.|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~--~~V~~l~f~p~-~~~~l~s~s~D  186 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPL-NTNQFYASSME  186 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSS--CCCCEEEECSS-CTTEEEEECSS
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCC--CCEEEEEEeCC-CCCEEEEEeCC
Confidence            34556778999999999999 677999999999999999987764444  44566  45999999984 56899999999


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                      |+|++||+++.....  ..........                                      ...++|+|++..++ 
T Consensus       187 ~~v~iwd~~~~~~~~--~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l~-  225 (435)
T 4e54_B          187 GTTRLQDFKGNILRV--FASSDTINIW--------------------------------------FCSLDVSASSRMVV-  225 (435)
T ss_dssp             SCEEEEETTSCEEEE--EECCSSCSCC--------------------------------------CCCEEEETTTTEEE-
T ss_pred             CEEEEeeccCCceeE--EeccCCCCcc--------------------------------------EEEEEECCCCCEEE-
Confidence            999999997653210  0000000000                                      00056889987554 


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                       +|+.||.|++||++. +.+..+.        +|    ...+.++. |+|++   ..+|++|+.|+.|++||+++ .+..
T Consensus       226 -~g~~dg~i~~wd~~~-~~~~~~~--------~h----~~~v~~v~-~~p~~---~~~~~s~s~d~~v~iwd~~~-~~~~  286 (435)
T 4e54_B          226 -TGDNVGNVILLNMDG-KELWNLR--------MH----KKKVTHVA-LNPCC---DWFLATASVDQTVKIWDLRQ-VRGK  286 (435)
T ss_dssp             -EECSSSBEEEEESSS-CBCCCSB--------CC----SSCEEEEE-ECTTC---SSEEEEEETTSBCCEEETTT-CCSS
T ss_pred             -EEeCCCcEeeeccCc-ceeEEEe--------cc----cceEEeee-ecCCC---ceEEEEecCcceeeEEeccc-cccc
Confidence             677899999999975 4455555        56    34577787 99983   33899999999999999987 4333


Q ss_pred             ---eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          246 ---TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       246 ---~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                         ....+|...|++++|+|++.+|++++.||.|++||+.+++....+
T Consensus       287 ~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          287 ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             SCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred             ceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence               334679999999999999999999999999999999988766543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-35  Score=232.33  Aligned_cols=252  Identities=14%  Similarity=0.160  Sum_probs=173.5

Q ss_pred             ceEEe-cC-CccceeEEEEcCCCCEEEEecCCCeEEEEeCCC-------CeEEEEEeeecCCcceEEEEEeecCCCCeEE
Q 022870           10 PVAVL-RG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVI   80 (291)
Q Consensus        10 ~~~~l-~~-h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (291)
                      ....+ .+ |.+.|++++|+|++++|++|+.|++|++||++.       .+++..+.+|...  |.+++|+|  ++++|+
T Consensus        48 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~--V~~v~~sp--~g~~la  123 (330)
T 2hes_X           48 LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENE--VKGVAWSN--DGYYLA  123 (330)
T ss_dssp             EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----C--EEEEEECT--TSCEEE
T ss_pred             EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCc--EEEEEECC--CCCEEE
Confidence            34555 44 999999999999999999999999999999853       3567778888855  99999999  999999


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCccc--cccceEEEEEeecccCccceeccCCCCceeeecccCc-cccccCCCCCC----
Q 022870           81 SQGRDGTVKCWDIENGGLSSNPSLT--IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDSK----  153 (291)
Q Consensus        81 s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----  153 (291)
                      +|+.|++|++||++......+....  .+........+++... ........+...+|+..... .....+.+|..    
T Consensus       124 s~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~  202 (330)
T 2hes_X          124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS  202 (330)
T ss_dssp             EEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred             EEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEE
Confidence            9999999999999543211111222  2333444445544332 22333445667778765542 33445667766    


Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCc--------ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEE
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTA--------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (291)
                      ++|+|++....+++|+.|+.|++||++.+        .+...+..       .|    ...+.++. |+++   +  +|+
T Consensus       203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-------~h----~~~v~~v~-~s~~---~--~l~  265 (330)
T 2hes_X          203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-------VH----KRQVYNVA-WGFN---G--LIA  265 (330)
T ss_dssp             EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-------CC----SSCEEEEE-ECTT---S--CEE
T ss_pred             EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-------cc----ccceEEEE-EcCC---C--EEE
Confidence            88999853323336778999999999764        22233321       13    44678887 9865   3  799


Q ss_pred             eecCCCcEEEEEccCCCC--ce-eecccccc-ceeEEEeec--CCCeeEEecCCCeEEEEEcCCC
Q 022870          226 AGYEDGSILVWDIRNPGI--PL-TAMKVHLE-PVLCLSIDE--SCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       226 ~g~~dg~i~vwd~~~~~~--~~-~~~~~h~~-~v~~~~~~~--~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      +|+.||.|++||..+ +.  .. ..+.+|.. .|++++|+|  ++++|++|+.||.|++|++++.
T Consensus       266 s~~~dg~v~iw~~~~-~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~~  329 (330)
T 2hes_X          266 SVGADGVLAVYEEVD-GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA  329 (330)
T ss_dssp             EEETTSCEEEEEEET-TEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred             EEeCCCEEEEEEcCC-CceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence            999999999999986 42  23 23467877 899999998  6889999999999999998753

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-35  Score=231.75  Aligned_cols=212  Identities=17%  Similarity=0.177  Sum_probs=162.1

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC--eEEEEE-ee-ecCCcceEEEEEeecCCCCeEEEEe
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSS-WV-HSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~-~~-~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      .+++.++++|.++|++++|+|+  +|++|+.|++|++||+..+  +....+ .. |.  .+|.+++|+|  ++++|++|+
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~--~~v~~v~~sp--~~~~las~s   77 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK--KAIRSVAWRP--HTSLLAAGS   77 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCC--SCEEEEEECT--TSSEEEEEE
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCcc--CCEEEEEECC--CCCEEEEEe
Confidence            3568899999999999999987  9999999999999999875  455555 33 66  4599999999  999999999


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCC
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  159 (291)
                      .|++|++||++......   ....  .                                  ...+.+|..    ++|+|+
T Consensus        78 ~D~~v~iw~~~~~~~~~---~~~~--~----------------------------------~~~~~~h~~~V~~v~~sp~  118 (330)
T 2hes_X           78 FDSTVSIWAKEESADRT---FEMD--L----------------------------------LAIIEGHENEVKGVAWSND  118 (330)
T ss_dssp             TTSCEEEEEC----------CCCE--E----------------------------------EEEEC----CEEEEEECTT
T ss_pred             CCCcEEEEEcccCcCcc---ccce--e----------------------------------EEEEcCCCCcEEEEEECCC
Confidence            99999999986532100   0000  0                                  000111111    679999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCc----ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (291)
                      +..++  +|+.|+.|++||++..    +++..+.        +|    ...+.++. |+|+   +. +|++|+.|+.|++
T Consensus       119 g~~la--s~s~D~~v~iwd~~~~~~~~~~~~~~~--------~h----~~~v~~v~-~~p~---~~-~l~s~s~D~~i~i  179 (330)
T 2hes_X          119 GYYLA--TCSRDKSVWIWETDESGEEYECISVLQ--------EH----SQDVKHVI-WHPS---EA-LLASSSYDDTVRI  179 (330)
T ss_dssp             SCEEE--EEETTSCEEEEECCTTCCCCEEEEEEC--------CC----SSCEEEEE-ECSS---SS-EEEEEETTSCEEE
T ss_pred             CCEEE--EEeCCCEEEEEeccCCCCCeEEEEEec--------cC----CCceEEEE-ECCC---CC-EEEEEcCCCeEEE
Confidence            87554  6777999999999532    3455565        56    34577787 9998   44 9999999999999


Q ss_pred             EEccCCC--CceeeccccccceeEEEeecC--CCeeEEecCCCeEEEEEcCCC
Q 022870          236 WDIRNPG--IPLTAMKVHLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       236 wd~~~~~--~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      ||.++ +  +++..+.+|...|.+++|+|+  +.+|++++.|++|++||++.+
T Consensus       180 W~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          180 WKDYD-DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             EEEET-TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             EECCC-CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            99986 4  577889999999999999998  778999999999999998654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.4e-35  Score=236.97  Aligned_cols=258  Identities=17%  Similarity=0.229  Sum_probs=198.1

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe------EEEEEeeecCCcceEEEEEeecCC----C--
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPSIG----L--   76 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~----~--   76 (291)
                      .....+++|.++|++++|+|  .+|++|+.||.|++||+.+++      .+..+..|...  |.+++|+|  +    +  
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~~g~~   80 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG--LHHVDVLQ--AIERDAFE   80 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTC--EEEEEEEE--EEETTTEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCc--EEEEEEec--ccccCCcc
Confidence            45678899999999999999  699999999999999999887      67888888755  99999999  8    8  


Q ss_pred             -CeEEEEeCCCeEEEEECCCCCCCCCC---ccccc-----cceEEEEEee----cccCccceeccCCCCceeeeccc---
Q 022870           77 -NKVISQGRDGTVKCWDIENGGLSSNP---SLTIK-----TNSYHFCKLS----LVKEPYANAKQANEPKDCYEREV---  140 (291)
Q Consensus        77 -~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---  140 (291)
                       .+|++++.||.|++||+.+++.....   .+..+     ........+.    +............+...+|++..   
T Consensus        81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence             99999999999999999987641110   11222     2344455555    33322133344557778888876   


Q ss_pred             ---Cccccc----cC-------CCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCC---C
Q 022870          141 ---GETVDT----DS-------LCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN---F  199 (291)
Q Consensus       141 ---~~~~~~----~~-------~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~---~  199 (291)
                         ......    .+       ..|..    ++|+|++  +++ +++.|+.|++||+++++.+..+.        .   |
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~-~~~~dg~i~i~d~~~~~~~~~~~--------~~~~h  229 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIA-TGFNNGTVQISELSTLRPLYNFE--------SQHSM  229 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEE-EECTTSEEEEEETTTTEEEEEEE--------CCC--
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEE-EEeCCCcEEEEECCCCceeEEEe--------ccccc
Confidence               433320    11       22332    8999998  344 67779999999999999888887        4   4


Q ss_pred             CCCcceeeeeEEEecCCCCCCceEEEeecCC---CcEEEEEccCCCCceeeccc-------------cccceeEEEeecC
Q 022870          200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---GSILVWDIRNPGIPLTAMKV-------------HLEPVLCLSIDES  263 (291)
Q Consensus       200 ~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~-------------h~~~v~~~~~~~~  263 (291)
                      .. ....+.++. |+|+   +. +|++++.|   |.|++||+++ ++++..+.+             |...|.+++|+|+
T Consensus       230 ~~-~~~~i~~i~-~~~~---~~-~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  302 (397)
T 1sq9_A          230 IN-NSNSIRSVK-FSPQ---GS-LLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS  302 (397)
T ss_dssp             -C-CCCCEEEEE-ECSS---TT-EEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred             cc-cCCccceEE-ECCC---CC-EEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCC
Confidence            11 134567776 9998   44 89999999   9999999998 888889988             9999999999999


Q ss_pred             CCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          264 CNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       264 ~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +++|++++.||.|++||+++++.+..+
T Consensus       303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          303 GETLCSAGWDGKLRFWDVKTKERITTL  329 (397)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEEcCCCceeEEE
Confidence            999999999999999999999887654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.3e-34  Score=228.45  Aligned_cols=250  Identities=16%  Similarity=0.206  Sum_probs=184.3

Q ss_pred             CceEEecCCccceeEEEE-----cC-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeeecCCcceEEEEEeecCC
Q 022870            9 DPVAVLRGHRASVTDVCF-----HQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIG   75 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~-----~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~   75 (291)
                      ++..+|++|.+.|++++|     ++ ++.+|++|+.|++|++||+.+.       .+...+.+|...  |.+++|+|  +
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~--V~~~~~~~--~   87 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF--VSDLALSQ--E   87 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSC--EEEEEECS--S
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCc--eEEEEECC--C
Confidence            457789999999999999     77 8999999999999999998643       456678888855  99999999  9


Q ss_pred             CCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccc-cCCCCCC-
Q 022870           76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLCDSK-  153 (291)
Q Consensus        76 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-  153 (291)
                      +.++++|+.|++|++||+++++...  .+..+........+++.... .......+...+|++........ ....|.. 
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  164 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYK--RFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLWNILGECKFSSAEKENHSDW  164 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEE--EEECCCSCEEEEEECSSTTE-EEEEETTSCEEEEESSSCEEEECCTTTSCSSC
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEE--EEcCCCCcEEEEEECCCCCE-EEEEcCCCEEEEEeccCCceeeeecccCCCce
Confidence            9999999999999999999886543  22334444555555554332 23334556778888764322221 2224443 


Q ss_pred             ---cccCCCCC---------cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCc
Q 022870          154 ---DDVPAEGP---------KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (291)
Q Consensus       154 ---~~~~~~~~---------~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~  221 (291)
                         ++|+|++.         .+++ +++.|+.|++||. ..+....+.        +|.    ..+.++. |+|+   |+
T Consensus       165 v~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~-~~~~~~~~~--------~h~----~~v~~~~-~s~~---g~  226 (343)
T 2xzm_R          165 VSCVRYSPIMKSANKVQPFAPYFA-SVGWDGRLKVWNT-NFQIRYTFK--------AHE----SNVNHLS-ISPN---GK  226 (343)
T ss_dssp             EEEEEECCCCCSCSCCCSSCCEEE-EEETTSEEEEEET-TTEEEEEEE--------CCS----SCEEEEE-ECTT---SS
T ss_pred             eeeeeeccccccccccCCCCCEEE-EEcCCCEEEEEcC-CCceeEEEc--------Ccc----ccceEEE-ECCC---CC
Confidence               78888763         3444 5667999999994 455566666        563    4577787 9998   44


Q ss_pred             eEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       222 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                       +|++|+.||.|++||+++...+...+. +...|.+++|+|++.+++++ .|+.|++|++.+++.
T Consensus       227 -~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~  288 (343)
T 2xzm_R          227 -YIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSK  288 (343)
T ss_dssp             -EEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCS
T ss_pred             -EEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCC
Confidence             999999999999999965355544443 45679999999999877655 588899999987654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-33  Score=228.94  Aligned_cols=253  Identities=11%  Similarity=0.147  Sum_probs=190.2

Q ss_pred             CceEEecC-CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            9 DPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         9 ~~~~~l~~-h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      +....+.. |...|++++|+|++.+|++|+.||.|++||+.+++.+..+..|...  |.+++|++    ++|++++.||.
T Consensus       124 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~----~~l~~~~~dg~  197 (401)
T 4aez_A          124 SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR--VGCLSWNR----HVLSSGSRSGA  197 (401)
T ss_dssp             CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEEET----TEEEEEETTSE
T ss_pred             cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc--eEEEEECC----CEEEEEcCCCC
Confidence            44555554 8999999999999999999999999999999999999999988855  99999965    79999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcE
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (291)
                      |++||++....... .+..+........+++.. .........+...+|++........ +..|..    ++|+|++..+
T Consensus       198 i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l  274 (401)
T 4aez_A          198 IHHHDVRIANHQIG-TLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFT-KTNHNAAVKAVAWCPWQSNL  274 (401)
T ss_dssp             EEEEETTSSSCEEE-EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEE-ECCCSSCCCEEEECTTSTTE
T ss_pred             EEEEecccCcceee-EEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEE-ecCCcceEEEEEECCCCCCE
Confidence            99999985432110 122233344444444422 2233344556788888877554332 233433    8999999888


Q ss_pred             EEEe-cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe--ecCCCcEEEEEccC
Q 022870          164 MAVA-GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSILVWDIRN  240 (291)
Q Consensus       164 ~~~~-g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~--g~~dg~i~vwd~~~  240 (291)
                      ++++ |+.|+.|++||+++++.+..+..             ...+.++. |+|+   +. ++++  |+.||.|++||+++
T Consensus       275 l~~~~gs~d~~i~i~d~~~~~~~~~~~~-------------~~~v~~~~-~s~~---~~-~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          275 LATGGGTMDKQIHFWNAATGARVNTVDA-------------GSQVTSLI-WSPH---SK-EIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             EEEECCTTTCEEEEEETTTCCEEEEEEC-------------SSCEEEEE-ECSS---SS-EEEEEECTTTCEEEEEEEET
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEEEeC-------------CCcEEEEE-ECCC---CC-eEEEEeecCCCcEEEEecCC
Confidence            8754 34799999999999998888862             23577787 9998   44 6777  66899999999987


Q ss_pred             CCCce--eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          241 PGIPL--TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       241 ~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                       +...  ..+.+|...|.+++|+|++.+|++++.||.|++|++.+++.+..
T Consensus       337 -~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          337 -SGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             -TEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred             -ccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence             4443  34678999999999999999999999999999999999887654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.1e-34  Score=231.76  Aligned_cols=267  Identities=16%  Similarity=0.186  Sum_probs=189.3

Q ss_pred             CceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEe-------------eecCCcceEEEEEeecC
Q 022870            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSW-------------VHSAAHGIVSVATGPSI   74 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~   74 (291)
                      +....+.+|.++|++++|+| ++++|++|+.||.|++||+.+++....+.             .|.  .+|.+++|+|. 
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~-  110 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR--YSVETVQWYPH-  110 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS--SCEEEEEECTT-
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC--CcEEEEEEccC-
Confidence            56778899999999999999 99999999999999999998876544332             355  45999999993 


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCc--cceeccCCCCceeeecccCccccccCCCCC
Q 022870           75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP--YANAKQANEPKDCYEREVGETVDTDSLCDS  152 (291)
Q Consensus        75 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (291)
                      ++.+|++++.||.|++||+++++...  .... ........+.+....  ........+...+|++....... .+..|.
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~~  186 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQTAD--VFNF-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH-ILQGHR  186 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTEEEE--EEEC-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE-EECCCC
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCccce--eccC-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee-eecCCC
Confidence            34689999999999999999876533  1221 122223333332211  23344556677888887665433 344454


Q ss_pred             C----cccCCCCCcEEEEecCCcCeEEEEeCCCcc-eeeEeccccc---CCCCCCCCCcceeeeeEEEecCCCCCCceEE
Q 022870          153 K----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSC---GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (291)
Q Consensus       153 ~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l  224 (291)
                      .    ++|+|+++++++ +|+.||.|++||++++. +...+.....   .............+.++. |+|+   ++ +|
T Consensus       187 ~~v~~~~~~~~~~~ll~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~---~~-~l  260 (408)
T 4a11_B          187 QEILAVSWSPRYDYILA-TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC-FTSD---GL-HL  260 (408)
T ss_dssp             SCEEEEEECSSCTTEEE-EEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE-ECTT---SS-EE
T ss_pred             CcEEEEEECCCCCcEEE-EEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE-EcCC---CC-EE
Confidence            4    899999987666 56679999999998876 3333321000   000001122355678887 9998   44 89


Q ss_pred             EeecCCCcEEEEEccCCC----------------------------------------------CceeeccccccceeEE
Q 022870          225 LAGYEDGSILVWDIRNPG----------------------------------------------IPLTAMKVHLEPVLCL  258 (291)
Q Consensus       225 ~~g~~dg~i~vwd~~~~~----------------------------------------------~~~~~~~~h~~~v~~~  258 (291)
                      ++++.||.|++||+++..                                              +++..+.+|...|+++
T Consensus       261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~  340 (408)
T 4a11_B          261 LTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCC  340 (408)
T ss_dssp             EEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEE
Confidence            999999999999987622                                              3345567899999999


Q ss_pred             EeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          259 SIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      +|+|++++|++++.||.|++||+++++.+.
T Consensus       341 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~  370 (408)
T 4a11_B          341 VFQSNFQELYSGSRDCNILAWVPSLYEPVP  370 (408)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred             EEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence            999999999999999999999999987654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.5e-34  Score=249.29  Aligned_cols=219  Identities=15%  Similarity=0.218  Sum_probs=174.3

Q ss_pred             ceEEecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCC-----CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           10 PVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      ....+++|++.|++++|+|+ +.+|+||+.|++|++||+.+     +.....+.+|...  |.+++|+|  ++++|++|+
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~--v~~v~~s~--~g~~l~sgs  449 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHF--VEDVVLSS--DGQFALSGS  449 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSC--EEEEEECT--TSSEEEEEE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCc--EEEEEECC--CCCEEEEEe
Confidence            34578999999999999985 47999999999999999875     3456678888855  99999999  999999999


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                      .||+|++||+.+++...  .+..+......                                        ++|+|++..+
T Consensus       450 ~Dg~v~vwd~~~~~~~~--~~~~h~~~v~~----------------------------------------~~~s~~~~~l  487 (694)
T 3dm0_A          450 WDGELRLWDLAAGVSTR--RFVGHTKDVLS----------------------------------------VAFSLDNRQI  487 (694)
T ss_dssp             TTSEEEEEETTTTEEEE--EEECCSSCEEE----------------------------------------EEECTTSSCE
T ss_pred             CCCcEEEEECCCCccee--EEeCCCCCEEE----------------------------------------EEEeCCCCEE
Confidence            99999999998775422  11111111111                                        5699999776


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      +  +|+.|+.|++||+..........         ....+...+.++. |+|++. .. .|++|+.|+.|++||+++ .+
T Consensus       488 ~--s~s~D~~i~iwd~~~~~~~~~~~---------~~~~h~~~v~~~~-~~~~~~-~~-~l~s~s~d~~v~vwd~~~-~~  552 (694)
T 3dm0_A          488 V--SASRDRTIKLWNTLGECKYTISE---------GGEGHRDWVSCVR-FSPNTL-QP-TIVSASWDKTVKVWNLSN-CK  552 (694)
T ss_dssp             E--EEETTSCEEEECTTSCEEEEECS---------STTSCSSCEEEEE-ECSCSS-SC-EEEEEETTSCEEEEETTT-CC
T ss_pred             E--EEeCCCEEEEEECCCCcceeecc---------CCCCCCCcEEEEE-EeCCCC-cc-eEEEEeCCCeEEEEECCC-Cc
Confidence            5  67779999999987553332222         1112345677887 999842 22 799999999999999998 88


Q ss_pred             ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      ....+.+|.+.|++++|+|++++|++|+.||.|++||+++++.+..
T Consensus       553 ~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~  598 (694)
T 3dm0_A          553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS  598 (694)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC
T ss_pred             EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            8899999999999999999999999999999999999999987754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3e-34  Score=253.06  Aligned_cols=259  Identities=15%  Similarity=0.189  Sum_probs=206.8

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +..+.+.+|.+.|++++|+|++.+|++|+.||.|++||+.+++.+..+..|...  |.+++|+|  ++++|++++.||.|
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~--v~~~~~s~--~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP--VRAGKFIA--RKNWIIVGSDDFRI   79 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEEEG--GGTEEEEEETTSEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCc--EEEEEEeC--CCCEEEEEeCCCeE
Confidence            457889999999999999999999999999999999999999999999988855  99999999  99999999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (291)
                      ++||+.+++...  .+..+........+++.... .......+...+|++.........+.+|..    ++|+|++...+
T Consensus        80 ~vw~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  156 (814)
T 3mkq_A           80 RVFNYNTGEKVV--DFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (814)
T ss_dssp             EEEETTTCCEEE--EEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             EEEECCCCcEEE--EEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence            999999886543  22333344445555544332 233445567788888776555555556655    89999433444


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                      + +++.||.|++||+++++....+..        +   ....+..+. |+|.. ++. +|++|+.||.|++||+++ +++
T Consensus       157 ~-~~~~dg~v~vwd~~~~~~~~~~~~--------~---~~~~v~~~~-~~~~~-~~~-~l~~~~~dg~i~~~d~~~-~~~  220 (814)
T 3mkq_A          157 A-SGCLDRTVKVWSLGQSTPNFTLTT--------G---QERGVNYVD-YYPLP-DKP-YMITASDDLTIKIWDYQT-KSC  220 (814)
T ss_dssp             E-EEETTSEEEEEETTCSSCSEEEEC--------C---CTTCCCEEE-ECCST-TCC-EEEEECTTSEEEEEETTT-TEE
T ss_pred             E-EEeCCCeEEEEECCCCcceeEEec--------C---CCCCEEEEE-EEECC-CCC-EEEEEeCCCEEEEEECCC-CcE
Confidence            4 566799999999998887777762        2   123455665 99832 144 899999999999999998 888


Q ss_pred             eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +..+.+|...|.+++|+|++.+|++++.||.|++||+.+++.+..+
T Consensus       221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  266 (814)
T 3mkq_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (814)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            9999999999999999999999999999999999999998876653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9e-34  Score=245.82  Aligned_cols=248  Identities=19%  Similarity=0.262  Sum_probs=186.8

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .....+.+|...|++++|+|++++|++|+.||+|+|||+.+++....+.+|...  |.+++|+|  ++++|++++.|++|
T Consensus       421 ~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~--v~~~~~s~--~~~~l~s~s~D~~i  496 (694)
T 3dm0_A          421 VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD--VLSVAFSL--DNRQIVSASRDRTI  496 (694)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEECT--TSSCEEEEETTSCE
T ss_pred             cccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC--EEEEEEeC--CCCEEEEEeCCCEE
Confidence            345788999999999999999999999999999999999999999999999855  99999999  99999999999999


Q ss_pred             EEEECCCCCCCC-CCccccccceEEEEEeecccC-ccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCc
Q 022870           89 KCWDIENGGLSS-NPSLTIKTNSYHFCKLSLVKE-PYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (291)
Q Consensus        89 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  162 (291)
                      ++||........ ......+........+++... .........+...+|++...... ..+.+|..    ++|+|++..
T Consensus       497 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~-~~~~~h~~~v~~v~~spdg~~  575 (694)
T 3dm0_A          497 KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR-STLAGHTGYVSTVAVSPDGSL  575 (694)
T ss_dssp             EEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSE
T ss_pred             EEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE-EEEcCCCCCEEEEEEeCCCCE
Confidence            999986542211 000011223344444544432 23344555677888888765543 34556665    899999975


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                      ++  +|+.|+.|++||+++++.+..+.        .     ...+.+++ |+|+   +. +++++ .++.|++||+++ +
T Consensus       576 l~--sg~~Dg~i~iwd~~~~~~~~~~~--------~-----~~~v~~~~-~sp~---~~-~l~~~-~~~~i~iwd~~~-~  633 (694)
T 3dm0_A          576 CA--SGGKDGVVLLWDLAEGKKLYSLE--------A-----NSVIHALC-FSPN---RY-WLCAA-TEHGIKIWDLES-K  633 (694)
T ss_dssp             EE--EEETTSBCEEEETTTTEEEECCB--------C-----SSCEEEEE-ECSS---SS-EEEEE-ETTEEEEEETTT-T
T ss_pred             EE--EEeCCCeEEEEECCCCceEEEec--------C-----CCcEEEEE-EcCC---Cc-EEEEE-cCCCEEEEECCC-C
Confidence            54  67779999999999998877665        2     23567776 9998   43 55555 466799999998 6


Q ss_pred             Cceeeccccc-------------------cceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          243 IPLTAMKVHL-------------------EPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       243 ~~~~~~~~h~-------------------~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      ..+..+..+.                   ..+++++|+|++++|++|+.||.|++|++..
T Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          634 SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence            6665554321                   2378999999999999999999999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-34  Score=236.18  Aligned_cols=258  Identities=14%  Similarity=0.176  Sum_probs=185.8

Q ss_pred             CCCceEEe-cCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCC---Ce---EEEEEeeecCCcceEEEEEeecCCCCe
Q 022870            7 PPDPVAVL-RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ---HR---TVSSSWVHSAAHGIVSVATGPSIGLNK   78 (291)
Q Consensus         7 ~~~~~~~l-~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~---~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~   78 (291)
                      .++++.++ ++|.+.|++++|+| ++.+|++|+.||+|++||+.+   +.   ....+ .|.  .+|.+++|+|  ++++
T Consensus        51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~--~~v~~~~~~~--~~~~  125 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCS--STVTQITMIP--NFDA  125 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECS--SCEEEEEECT--TSSE
T ss_pred             cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCC--CCEEEEEEeC--CCCE
Confidence            44678888 89999999999999 999999999999999999876   33   23333 366  4599999999  9999


Q ss_pred             EEEEeCCCeEEEEECC---CCCCCCCCccccccceEEEEEeec--------------cc-CccceeccCCCCceeeeccc
Q 022870           79 VISQGRDGTVKCWDIE---NGGLSSNPSLTIKTNSYHFCKLSL--------------VK-EPYANAKQANEPKDCYEREV  140 (291)
Q Consensus        79 l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~  140 (291)
                      |++++.||+|++||++   .++...    ...........+..              .. ..........+...+|+++.
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  201 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVK----FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT  201 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEE----EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred             EEEEeCCCEEEEEEeccccCCceee----ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            9999999999999995   333211    11111111111111              01 11233344456677888877


Q ss_pred             CccccccCCC-CCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecC
Q 022870          141 GETVDTDSLC-DSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (291)
Q Consensus       141 ~~~~~~~~~~-~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  215 (291)
                      .......... |..    ++|+|++..++  +|+.||.|++||+++++++..+..       .|    ...+.++. |+|
T Consensus       202 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~-------~~----~~~v~~~~-~~~  267 (437)
T 3gre_A          202 LERLQIIENSPRHGAVSSICIDEECCVLI--LGTTRGIIDIWDIRFNVLIRSWSF-------GD----HAPITHVE-VCQ  267 (437)
T ss_dssp             CCEEEEEECCGGGCCEEEEEECTTSCEEE--EEETTSCEEEEETTTTEEEEEEBC-------TT----CEEEEEEE-ECT
T ss_pred             CeeeEEEccCCCCCceEEEEECCCCCEEE--EEcCCCeEEEEEcCCccEEEEEec-------CC----CCceEEEE-ecc
Confidence            6544332221 333    89999987555  677799999999999998888752       22    34677775 665


Q ss_pred             CCC-CCceEEEeecCCCcEEEEEccCCCCceeeccc--------------------------cccceeEEEeecCCCeeE
Q 022870          216 SKS-QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV--------------------------HLEPVLCLSIDESCNGGI  268 (291)
Q Consensus       216 ~~~-~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--------------------------h~~~v~~~~~~~~~~~l~  268 (291)
                      .-. ++. +|++|+.||.|++||+++ ++.+..+.+                          |...|++++|+ ++++|+
T Consensus       268 ~~s~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~  344 (437)
T 3gre_A          268 FYGKNSV-IVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL  344 (437)
T ss_dssp             TTCTTEE-EEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred             ccCCCcc-EEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence            421 244 899999999999999997 665554443                          56678899999 778999


Q ss_pred             EecCCCeEEEEEcCCCceeeee
Q 022870          269 SGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       269 s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +|+.||.|++||+++++.++.+
T Consensus       345 s~~~d~~i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          345 TDEATSSIVMFSLNELSSSKAV  366 (437)
T ss_dssp             EEGGGTEEEEEETTCGGGCEEE
T ss_pred             ecCCCCeEEEEECCCcccceEE
Confidence            9999999999999998877654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-33  Score=234.35  Aligned_cols=252  Identities=17%  Similarity=0.240  Sum_probs=195.0

Q ss_pred             CCCCceEEecCCccce-eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            6 PPPDPVAVLRGHRASV-TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         6 ~~~~~~~~l~~h~~~v-~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      .......++.+|...| .++.+  ++.+|++|+.||+|++||+.+++.+..+.+|...  |.+++|+|  ++ +|++|+.
T Consensus       109 ~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~--V~~l~~~~--~~-~l~s~s~  181 (464)
T 3v7d_B          109 KFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG--VWALKYAH--GG-ILVSGST  181 (464)
T ss_dssp             TCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECS--TT-EEEEEET
T ss_pred             CcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcC--EEEEEEcC--CC-EEEEEeC
Confidence            3335577899999885 66666  5679999999999999999999999999999855  99999999  75 9999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccC-ccceeccCCCCceeeecccCccc-------------------
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-PYANAKQANEPKDCYEREVGETV-------------------  144 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------------  144 (291)
                      ||+|++||+++++...  .+..+........+..... .........+...+|++......                   
T Consensus       182 dg~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (464)
T 3v7d_B          182 DRTVRVWDIKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN  259 (464)
T ss_dssp             TSCEEEEETTTTEEEE--EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred             CCCEEEEECCCCcEEE--EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence            9999999999886543  2222333444444443222 23344455667777877655432                   


Q ss_pred             ---cccCCCCCC--cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCC
Q 022870          145 ---DTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (291)
Q Consensus       145 ---~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  219 (291)
                         .....+|..  .++++++..++  +|+.|+.|++||+++++++..+.        +|    ...+.++. |+|+   
T Consensus       260 ~~~~~~~~~~~~~v~~~~~~~~~l~--~~~~d~~i~vwd~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---  321 (464)
T 3v7d_B          260 PYFVGVLRGHMASVRTVSGHGNIVV--SGSYDNTLIVWDVAQMKCLYILS--------GH----TDRIYSTI-YDHE---  321 (464)
T ss_dssp             TTEEEEECCCSSCEEEEEEETTEEE--EEETTSCEEEEETTTTEEEEEEC--------CC----SSCEEEEE-EETT---
T ss_pred             eEEEEEccCccceEEEEcCCCCEEE--EEeCCCeEEEEECCCCcEEEEec--------CC----CCCEEEEE-EcCC---
Confidence               223344544  56677776554  56679999999999999988887        56    34577776 9998   


Q ss_pred             CceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      +. ++++|+.||.|++||+++ ++++..+.+|...|.+++|++  .+|++++.||.|++||+++++...
T Consensus       322 ~~-~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          322 RK-RCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             TT-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CC-EEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcEEEEEEcC--CEEEEEeCCCcEEEEECCCCceee
Confidence            44 899999999999999998 889999999999999999985  599999999999999999876554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.3e-34  Score=232.33  Aligned_cols=202  Identities=10%  Similarity=0.016  Sum_probs=152.7

Q ss_pred             CccceeEEEEcCCCCEEE--EecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870           17 HRASVTDVCFHQTKPILF--AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~--s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~   94 (291)
                      +...+.+++|+|||++++  +++.|++|+|||+++++++..+. |..  .|.+++|+|  +|.+|++++.+ .+.+|+..
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~--~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~  205 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRG--EVKDLHFST--DGKVVAYITGS-SLEVISTV  205 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSS--CCCEEEECT--TSSEEEEECSS-CEEEEETT
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCC--ceEEEEEcc--CCceEEeccce-eEEEEEec
Confidence            455688999999999876  45579999999999999998886 554  499999999  99999999865 56677766


Q ss_pred             CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC--
Q 022870           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--  172 (291)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--  172 (291)
                      +++....  .....+......                                      ++|+|++..++++  +.|+  
T Consensus       206 ~~~~~~~--~~~~~~~~~v~~--------------------------------------v~fspdg~~l~~~--s~d~~~  243 (365)
T 4h5i_A          206 TGSCIAR--KTDFDKNWSLSK--------------------------------------INFIADDTVLIAA--SLKKGK  243 (365)
T ss_dssp             TCCEEEE--ECCCCTTEEEEE--------------------------------------EEEEETTEEEEEE--EESSSC
T ss_pred             cCcceee--eecCCCCCCEEE--------------------------------------EEEcCCCCEEEEE--ecCCcc
Confidence            6543211  111111111100                                      5689998766643  3344  


Q ss_pred             --eEEEEeCCCccee----eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          173 --EVEIWDLNTAERC----TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       173 --~i~~wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                        .+++||+......    ..+.        +|    ...+.+++ |+|+   |+ +|++|+.|+.|+|||+++ ++++.
T Consensus       244 ~~~i~~~~~~~~~~~~~~~~~~~--------~~----~~~V~~~~-~Spd---g~-~lasgs~D~~V~iwd~~~-~~~~~  305 (365)
T 4h5i_A          244 GIVLTKISIKSGNTSVLRSKQVT--------NR----FKGITSMD-VDMK---GE-LAVLASNDNSIALVKLKD-LSMSK  305 (365)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEE--------SS----CSCEEEEE-ECTT---SC-EEEEEETTSCEEEEETTT-TEEEE
T ss_pred             eeEEeecccccceecceeeeeec--------CC----CCCeEeEE-ECCC---CC-ceEEEcCCCEEEEEECCC-CcEEE
Confidence              6888998776532    2233        34    34577887 9998   55 999999999999999998 78887


Q ss_pred             e-ccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          247 A-MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       247 ~-~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      . +.+|...|++++|+|++++|||||.|++|+||++...
T Consensus       306 ~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          306 IFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            6 5799999999999999999999999999999999654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-33  Score=220.49  Aligned_cols=251  Identities=14%  Similarity=0.220  Sum_probs=188.5

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      +.++..++.+|.+.|++++| +++.+|++|+.||.|++||+.+++....+..|...  |.+++|+|  ++.+|++++.||
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~~~~~dg   81 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGF--LNSVCYDS--EKELLLFGGKDT   81 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSC--EEEEEEET--TTTEEEEEETTS
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCcc--EEEEEECC--CCCEEEEecCCC
Confidence            33678899999999999999 99999999999999999999999999888888755  99999999  999999999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCC-CCC
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA-EGP  161 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~  161 (291)
                      .|++|++....... +...+..+......+.+. ..........+...+|+   .......+..|..    +++.| ++.
T Consensus        82 ~i~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~  156 (313)
T 3odt_A           82 MINGVPLFATSGED-PLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSEN  156 (313)
T ss_dssp             CEEEEETTCCTTSC-C-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTT
T ss_pred             eEEEEEeeecCCCC-cccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCC
Confidence            99999998654221 122222222222222222 22233344445566666   2222233334444    67777 555


Q ss_pred             cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                       .++ +++.|+.|++||.  .+....+..       .|    ...+.++. |+|+   +  .+++++.||.|++||+++ 
T Consensus       157 -~l~-~~~~d~~i~i~d~--~~~~~~~~~-------~~----~~~i~~~~-~~~~---~--~~~~~~~dg~i~i~d~~~-  214 (313)
T 3odt_A          157 -KFL-TASADKTIKLWQN--DKVIKTFSG-------IH----NDVVRHLA-VVDD---G--HFISCSNDGLIKLVDMHT-  214 (313)
T ss_dssp             -EEE-EEETTSCEEEEET--TEEEEEECS-------SC----SSCEEEEE-EEET---T--EEEEEETTSEEEEEETTT-
T ss_pred             -EEE-EEECCCCEEEEec--CceEEEEec-------cC----cccEEEEE-EcCC---C--eEEEccCCCeEEEEECCc-
Confidence             444 5666999999993  445555552       13    44677776 9987   4  489999999999999998 


Q ss_pred             CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ++++..+.+|...|++++|+|++ .|++++.||.|++||+++++.+..+
T Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~  262 (313)
T 3odt_A          215 GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI  262 (313)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred             hhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE
Confidence            88999999999999999999999 5899999999999999999877654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.2e-34  Score=233.79  Aligned_cols=260  Identities=13%  Similarity=0.124  Sum_probs=192.0

Q ss_pred             CceEEecCCccceeEEEEcCC----C---CEEEEecCCCeEEEEeCCCCeE-----EEEEeeecC---CcceEEEEEe--
Q 022870            9 DPVAVLRGHRASVTDVCFHQT----K---PILFAGTTGGELRIWDTVQHRT-----VSSSWVHSA---AHGIVSVATG--   71 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~----~---~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~---~~~v~~~~~~--   71 (291)
                      +++..+.+|..+|++++|+|+    +   .+|++++.||.|++||+.+++.     ...+..|..   ..+|.+++|+  
T Consensus        53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  132 (397)
T 1sq9_A           53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS  132 (397)
T ss_dssp             GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred             CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence            468889999999999999999    9   9999999999999999988876     778887731   1449999999  


Q ss_pred             --ecCCCCe-EEEEeCCCeEEEEECCC------CCCCC-CCcccc---------ccceEEEEEeecccCccceeccCCCC
Q 022870           72 --PSIGLNK-VISQGRDGTVKCWDIEN------GGLSS-NPSLTI---------KTNSYHFCKLSLVKEPYANAKQANEP  132 (291)
Q Consensus        72 --~~~~~~~-l~s~~~dg~i~iwd~~~------~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (291)
                        |  ++.+ |++++.||.|++||+++      .+... .+...+         +........+.+..  ........+.
T Consensus       133 ~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~  208 (397)
T 1sq9_A          133 NDR--LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGT  208 (397)
T ss_dssp             C------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSE
T ss_pred             cCC--CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCc
Confidence              8  8899 99999999999999988      44322 110011         12223333444433  3334445566


Q ss_pred             ceeeecccCccccccCCC---C---CC----cccCCCCCcEEEEecCCc---CeEEEEeCCCcceeeEecccccCC----
Q 022870          133 KDCYEREVGETVDTDSLC---D---SK----DDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERCTRLHQNSCGG----  195 (291)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~---~---~~----~~~~~~~~~~~~~~g~~d---~~i~~wd~~~~~~~~~~~~~~~~~----  195 (291)
                      ..+|++........ +..   |   ..    ++|+|++..++  +++.|   +.|++||+++++.+..+.......    
T Consensus       209 i~i~d~~~~~~~~~-~~~~~~h~~~~~~i~~i~~~~~~~~l~--~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~  285 (397)
T 1sq9_A          209 VQISELSTLRPLYN-FESQHSMINNSNSIRSVKFSPQGSLLA--IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL  285 (397)
T ss_dssp             EEEEETTTTEEEEE-EECCC---CCCCCEEEEEECSSTTEEE--EEEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred             EEEEECCCCceeEE-EeccccccccCCccceEEECCCCCEEE--EEecCCCCceEEEEECCCCcccceeccCcccccccc
Confidence            77888876554332 223   4   33    89999987555  56668   999999999999888887200000    


Q ss_pred             -CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc------cc---------------cc
Q 022870          196 -SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK------VH---------------LE  253 (291)
Q Consensus       196 -~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~------~h---------------~~  253 (291)
                       ...|    ...+.++. |+|+   ++ +|++++.||.|++||+++ ++++..+.      +|               ..
T Consensus       286 ~~~~~----~~~v~~~~-~~~~---~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  355 (397)
T 1sq9_A          286 GEFAH----SSWVMSLS-FNDS---GE-TLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  355 (397)
T ss_dssp             CCBSB----SSCEEEEE-ECSS---SS-EEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             ccccc----CCcEEEEE-ECCC---CC-EEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhhhhccccccccccCC
Confidence             0003    44677887 9998   44 899999999999999998 88888888      78               99


Q ss_pred             ceeEEEeecCC----------CeeEEecCCCeEEEEEcCCCc
Q 022870          254 PVLCLSIDESC----------NGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       254 ~v~~~~~~~~~----------~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      .|++++|+|++          ++|++++.||.|++|++++++
T Consensus       356 ~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          356 GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            99999999998          799999999999999998874

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.4e-33  Score=239.88  Aligned_cols=240  Identities=18%  Similarity=0.294  Sum_probs=186.2

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .+.+..+.+|...|++++|+|++++|++|+.||.|++||. +++.+..+..|...  |.+++|+|  ++++|++++.|+.
T Consensus       334 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~--v~~~~~s~--dg~~l~~~~~d~~  408 (577)
T 2ymu_A          334 GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS--VRGVAFSP--DGQTIASASDDKT  408 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSC--EEEEEECT--TSSCEEEEETTSE
T ss_pred             CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCC--eEEEEECC--CCCEEEEEeCCCE
Confidence            3556788899999999999999999999999999999995 57888888888855  99999999  9999999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcE
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (291)
                      |++||... +...  .+..+........+++..... ..........+|+....  ....+.+|..    ++|+|+++.+
T Consensus       409 v~~~~~~~-~~~~--~~~~~~~~v~~~~~s~d~~~l-~~~~~d~~v~~w~~~~~--~~~~~~~~~~~v~~~~~spd~~~l  482 (577)
T 2ymu_A          409 VKLWNRNG-QLLQ--TLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQTI  482 (577)
T ss_dssp             EEEECTTC-CEEE--EEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTSC--EEEEEECCSSCEEEEEECTTSCEE
T ss_pred             EEEEeCCC-CEEE--EecCCCCCeEEEEECCCCCEE-EEEcCCCEEEEEECCCC--EEEEEcCCCCCEEEEEEcCCCCEE
Confidence            99999643 3221  122233344444444433222 22233445566665332  2233445554    8999999755


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      +  +++.|+.|++||. +++++..+.        +|.    ..+.+++ |+|+   |+ +|++++.||.|++||..  ++
T Consensus       483 a--s~~~d~~i~iw~~-~~~~~~~~~--------~h~----~~v~~l~-~s~d---g~-~l~s~~~dg~v~lwd~~--~~  540 (577)
T 2ymu_A          483 A--SASDDKTVKLWNR-NGQLLQTLT--------GHS----SSVRGVA-FSPD---GQ-TIASASDDKTVKLWNRN--GQ  540 (577)
T ss_dssp             E--EEETTSEEEEEET-TSCEEEEEE--------CCS----SCEEEEE-ECTT---SS-CEEEEETTSEEEEECTT--SC
T ss_pred             E--EEeCCCEEEEEcC-CCCEEEEEe--------CCC----CCEEEEE-EcCC---CC-EEEEEECcCEEEEEeCC--CC
Confidence            4  5667999999995 577888887        664    4577787 9998   44 89999999999999964  78


Q ss_pred             ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      ++..+.+|.+.|++++|+|++++|+|++.|++|++||
T Consensus       541 ~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          541 LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            8999999999999999999999999999999999997

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1e-33  Score=227.87  Aligned_cols=244  Identities=12%  Similarity=0.100  Sum_probs=188.7

Q ss_pred             ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      +..|.++|++++|+|++++|++|+.|+.|++||+.+++  .+..+..|...  |.+++|+|  ++++|++++.||.|++|
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ--VTGVDWAP--DSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC--EEEEEEET--TTTEEEEEETTSCEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCc--ccEEEEeC--CCCEEEEEcCCCeEEEE
Confidence            45699999999999999999999999999999999887  88888888855  99999999  99999999999999999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc---ccccCCCCCC----cccCCCCCcEE
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET---VDTDSLCDSK----DDVPAEGPKYM  164 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~  164 (291)
                      |+++++.........+........+.+... ........+...+|++.....   .......|..    ++|+|++..++
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  158 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  158 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence            998775322111112233344444444322 223334456677787776552   2223344444    89999987554


Q ss_pred             EEecCCcCeEEEEeCC------------------CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe
Q 022870          165 AVAGEQLSEVEIWDLN------------------TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (291)
                        +|+.|+.|++||++                  .++.+..+.        +|    ...+.++. |+|+   +. +|++
T Consensus       159 --~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~l~~  219 (372)
T 1k8k_C          159 --AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--------SS----CGWVHGVC-FSAN---GS-RVAW  219 (372)
T ss_dssp             --EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--------CC----SSCEEEEE-ECSS---SS-EEEE
T ss_pred             --EEcCCCCEEEEEcccccccccccccccccccchhhheEecC--------CC----CCeEEEEE-ECCC---CC-EEEE
Confidence              56679999999964                  456666665        44    44677787 9998   44 8999


Q ss_pred             ecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       227 g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      ++.||.|++||+++ ++++..+..|...|.+++|+|++.+|+++ .|+.|++|++++
T Consensus       220 ~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          220 VSHDSTVCLADADK-KMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EETTTEEEEEEGGG-TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EeCCCEEEEEECCC-CceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            99999999999998 88999999999999999999999988887 899999999988

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-35  Score=242.92  Aligned_cols=255  Identities=9%  Similarity=0.038  Sum_probs=182.3

Q ss_pred             CCceEEecCCccceeEEEEcCCC---------CEEEE-------------------ecCCCeEEEEeCCCCeEE----EE
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTK---------PILFA-------------------GTTGGELRIWDTVQHRTV----SS   55 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~---------~~l~s-------------------~~~dg~v~iwd~~~~~~~----~~   55 (291)
                      .+...++. +.+.|.+|+|+|++         ++||+                   ++.|++|+|||+.++++.    ..
T Consensus       124 ~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~  202 (524)
T 2j04_B          124 KRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT  202 (524)
T ss_dssp             CSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEE
T ss_pred             CcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEE
Confidence            34445555 67899999999976         56665                   557899999998776542    33


Q ss_pred             EeeecCCcceEEEEEeec----CCCCeEEEEeCCCeEEEEECCCCCCC-------CCCcccc--ccceEEEEEeecccCc
Q 022870           56 SWVHSAAHGIVSVATGPS----IGLNKVISQGRDGTVKCWDIENGGLS-------SNPSLTI--KTNSYHFCKLSLVKEP  122 (291)
Q Consensus        56 ~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~  122 (291)
                      +..|..  .|.+++|+|.    .++.+|++++.||+|++||+.++...       ..+...+  +........+..  ..
T Consensus       203 l~~~~~--~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~~  278 (524)
T 2j04_B          203 IVHSFG--EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--PT  278 (524)
T ss_dssp             EEECCC--SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--SS
T ss_pred             EEecCC--cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--CC
Confidence            555554  4999999992    12579999999999999999876432       1122222  233444444443  22


Q ss_pred             cceeccCCCCceeeecccCccccccCCCCCC----c--ccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCC
Q 022870          123 YANAKQANEPKDCYEREVGETVDTDSLCDSK----D--DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS  196 (291)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~  196 (291)
                      ........+...+|++.........+.+|..    +  +|+|++..+++ +|+.|++|+|||+++++++..+.       
T Consensus       279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la-S~S~D~tvklWD~~~~~~~~~~~-------  350 (524)
T 2j04_B          279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS-TVAVDGYFYIFNPKDIATTKTTV-------  350 (524)
T ss_dssp             EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE-EEETTSEEEEECGGGHHHHCEEE-------
T ss_pred             eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE-EeccCCeEEEEECCCCCcccccc-------
Confidence            3444556677888998866544444566766    5  56777745555 66779999999999988777665       


Q ss_pred             CCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeE
Q 022870          197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKI  276 (291)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i  276 (291)
                       +|...  ..+.+++ |+|+   ++ .+++++.|+.|++||+++ +.++..+.+|.+.|++++|+|++++|++|+.||+|
T Consensus       351 -~~~~~--~~v~~v~-fsp~---~~-~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv  421 (524)
T 2j04_B          351 -SRFRG--SNLVPVV-YCPQ---IY-SYIYSDGASSLRAVPSRA-AFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSL  421 (524)
T ss_dssp             -EECSC--CSCCCEE-EETT---TT-EEEEECSSSEEEEEETTC-TTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred             -ccccc--CcccceE-eCCC---cC-eEEEeCCCCcEEEEECcc-cccceeeecCCCceEEEEeCCCCCeEEEEECCCEE
Confidence             34221  2356676 9998   44 799999999999999998 77778889999999999999999999999999999


Q ss_pred             EEEEcCCC
Q 022870          277 VLYNLDHS  284 (291)
Q Consensus       277 ~vw~~~~~  284 (291)
                      ++||+..+
T Consensus       422 ~lwd~~~~  429 (524)
T 2j04_B          422 IITNAARR  429 (524)
T ss_dssp             ECCBSCSS
T ss_pred             EEEechHh
Confidence            99998654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=236.98  Aligned_cols=251  Identities=16%  Similarity=0.150  Sum_probs=191.4

Q ss_pred             CceEEecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCCCe------EEEE---EeeecCCcceEEEEEeecCC-CC
Q 022870            9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR------TVSS---SWVHSAAHGIVSVATGPSIG-LN   77 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~------~~~~---~~~~~~~~~v~~~~~~~~~~-~~   77 (291)
                      +++..+.+|...|++++|+|+ +.+|++++.||.|++||+.+++      ....   +..|.  .+|.+++|+|  + +.
T Consensus       104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~  179 (416)
T 2pm9_A          104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV--DEVISLAWNQ--SLAH  179 (416)
T ss_dssp             CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS--CCCCEEEECS--SCTT
T ss_pred             cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC--CCeeEEEeCC--CCCc
Confidence            578889999999999999998 8999999999999999998876      3322   24565  4599999999  7 68


Q ss_pred             eEEEEeCCCeEEEEECCCCCCCCCCccccc------cceEEEEEeecccCccceeccCCC---CceeeecccCccccccC
Q 022870           78 KVISQGRDGTVKCWDIENGGLSSNPSLTIK------TNSYHFCKLSLVKEPYANAKQANE---PKDCYEREVGETVDTDS  148 (291)
Q Consensus        78 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  148 (291)
                      +|++++.||.|++||+++++...  .+...      ........+.+............+   ...+|+++........+
T Consensus       180 ~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~  257 (416)
T 2pm9_A          180 VFASAGSSNFASIWDLKAKKEVI--HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL  257 (416)
T ss_dssp             EEEEESSSSCEEEEETTTTEEEE--EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC
T ss_pred             EEEEEcCCCCEEEEECCCCCcce--EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe
Confidence            99999999999999999876533  22222      334444555554433344444444   78889988765555555


Q ss_pred             C-CCCC----cccCC-CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCce
Q 022870          149 L-CDSK----DDVPA-EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (291)
Q Consensus       149 ~-~~~~----~~~~~-~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~  222 (291)
                      . +|..    ++|+| ++.. ++ +++.|+.|++||+++++.+..+.        +|.    ..+.++. |+|+++  . 
T Consensus       258 ~~~~~~~v~~~~~s~~~~~~-l~-s~~~dg~v~~wd~~~~~~~~~~~--------~~~----~~v~~~~-~s~~~~--~-  319 (416)
T 2pm9_A          258 NQGHQKGILSLDWCHQDEHL-LL-SSGRDNTVLLWNPESAEQLSQFP--------ARG----NWCFKTK-FAPEAP--D-  319 (416)
T ss_dssp             CSCCSSCEEEEEECSSCSSC-EE-EEESSSEEEEECSSSCCEEEEEE--------CSS----SCCCCEE-ECTTCT--T-
T ss_pred             ecCccCceeEEEeCCCCCCe-EE-EEeCCCCEEEeeCCCCccceeec--------CCC----CceEEEE-ECCCCC--C-
Confidence            5 6655    89999 6654 44 56669999999999999998887        563    3566776 999831  3 


Q ss_pred             EEEeecCCCcEEEEEccCCCCceeec-----------------------------------cccccceeEEEeecCCCee
Q 022870          223 NVLAGYEDGSILVWDIRNPGIPLTAM-----------------------------------KVHLEPVLCLSIDESCNGG  267 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~-----------------------------------~~h~~~v~~~~~~~~~~~l  267 (291)
                      +|++++.||.|++||+.+ .......                                   ..|..++.+++|+|+|++|
T Consensus       320 ~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  398 (416)
T 2pm9_A          320 LFACASFDNKIEVQTLQN-LTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLV  398 (416)
T ss_dssp             EEEECCSSSEEEEEESCC-CCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEE
T ss_pred             EEEEEecCCcEEEEEccC-CCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEE
Confidence            899999999999999987 3322221                                   1167788899999999999


Q ss_pred             EEecCCCeEEEEEcCCC
Q 022870          268 ISGGADQKIVLYNLDHS  284 (291)
Q Consensus       268 ~s~s~dg~i~vw~~~~~  284 (291)
                      ++++.||.|+||++.+.
T Consensus       399 a~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          399 QITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CBCTTSSCBCCBCCCCC
T ss_pred             EEeCCCCeEEEEEeccC
Confidence            99999999999999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.8e-33  Score=219.62  Aligned_cols=247  Identities=17%  Similarity=0.193  Sum_probs=186.1

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe---EEEEEe--eecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSW--VHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      ...+|.+.|++++|+|++++|++++ ||.|++||+.+++   ....+.  .|.  .+|.+++|+|  ++++|++++.||.
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~  120 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD--NYIRSCKLLP--DGCTLIVGGEAST  120 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT--SBEEEEEECT--TSSEEEEEESSSE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCC--CcEEEEEEcC--CCCEEEEEcCCCc
Confidence            3347999999999999999999999 9999999998764   333344  444  5599999999  9999999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcE
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (291)
                      |++||+++++.........+........+.+... ........+...+|++....... .+..|..    ++|+|++..+
T Consensus       121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l  198 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISNDGTKL  198 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEE
T ss_pred             EEEEECCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceee-eeecccCceEEEEECCCCCEE
Confidence            9999999875321111222223333444443222 22333445667788887665433 3344444    8999998765


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      +  +++.|+.|++||+++++.+..+..             ...+.++. |+|+   ++ +|++++.||.|++||+++ .+
T Consensus       199 ~--~~~~dg~i~~~d~~~~~~~~~~~~-------------~~~v~~~~-~s~~---~~-~l~~~~~~~~i~~~~~~~-~~  257 (337)
T 1gxr_A          199 W--TGGLDNTVRSWDLREGRQLQQHDF-------------TSQIFSLG-YCPT---GE-WLAVGMESSNVEVLHVNK-PD  257 (337)
T ss_dssp             E--EEETTSEEEEEETTTTEEEEEEEC-------------SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTS-SC
T ss_pred             E--EEecCCcEEEEECCCCceEeeecC-------------CCceEEEE-ECCC---CC-EEEEEcCCCcEEEEECCC-CC
Confidence            5  566799999999999988777652             33567776 9998   44 899999999999999997 44


Q ss_pred             ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                       ...+..|...|.+++|+|++++|++++.||.|++||+++++.+.
T Consensus       258 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          258 -KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             -EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             -eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence             45678899999999999999999999999999999999987764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.3e-33  Score=229.65  Aligned_cols=260  Identities=12%  Similarity=0.120  Sum_probs=180.2

Q ss_pred             ceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ....+.+|.+.|++|+|+| ++.+|++|+.||+|++||++++........+.....+.+++|+|  ++.+|++|+.||.|
T Consensus       156 ~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~g~~dg~i  233 (435)
T 4e54_B          156 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA--SSRMVVTGDNVGNV  233 (435)
T ss_dssp             EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET--TTTEEEEECSSSBE
T ss_pred             eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC--CCCEEEEEeCCCcE
Confidence            3456779999999999998 78899999999999999998765544444444434588999999  99999999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccc--cCCCCCC----cccCCCCCc
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT--DSLCDSK----DDVPAEGPK  162 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~  162 (291)
                      ++||++.... .  .+..+........+.+............+.+.+|+++.......  ...+|..    ++|+|++..
T Consensus       234 ~~wd~~~~~~-~--~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~  310 (435)
T 4e54_B          234 ILLNMDGKEL-W--NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR  310 (435)
T ss_dssp             EEEESSSCBC-C--CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE
T ss_pred             eeeccCccee-E--EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe
Confidence            9999976432 2  22334445555555554444444455667788888876654332  2344554    899999976


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcc--eeeeeEEEecCCCC--------CCceEEEeecCCCc
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR--GMCMAVQAYLPSKS--------QGFVNVLAGYEDGS  232 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~--------~g~~~l~~g~~dg~  232 (291)
                      ++  +|+.|+.|++||+++++....+.        .|.....  ....... |+|.+.        ++...++++..++.
T Consensus       311 l~--s~~~D~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~  379 (435)
T 4e54_B          311 LL--TTDQKSEIRVYSASQWDCPLGLI--------PHPHRHFQHLTPIKAA-WHPRYNLIVVGRYPDPNFKSCTPYELRT  379 (435)
T ss_dssp             EE--EEESSSCEEEEESSSSSSEEEEC--------CCCCCCCSSSCCCBCE-ECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred             eE--EEcCCCEEEEEECCCCccceEEe--------cccccccccceeEEEE-EcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence            55  66779999999999998877765        3322111  1122222 555421        01112233335578


Q ss_pred             EEEEEccCCCCceeec-cccccceeEE-EeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          233 ILVWDIRNPGIPLTAM-KVHLEPVLCL-SIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       233 i~vwd~~~~~~~~~~~-~~h~~~v~~~-~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      |++||..+ ++.+..+ .+|...|.++ +|+|+|.+|++|+ |+.|+||++++++..
T Consensus       380 i~iwd~~~-g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          380 IDVFDGNS-GKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             EEEECSSS-CCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             EEEEECCC-CcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            99999998 7777665 4788889887 6999999999886 889999999998753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.9e-33  Score=227.35  Aligned_cols=253  Identities=12%  Similarity=0.114  Sum_probs=185.7

Q ss_pred             CCceEEecCCccceeEEEEcCCC-CEEEEecCCCeEEEEeCCCCeEEEEEee--ecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWV--HSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      .+....+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+..  |.  ..|.+++|+|. ++++|++++.
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~--~~v~~~~~~~~-~~~~l~s~~~  139 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPG--DAITGMKFNQF-NTNQLFVSSI  139 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTT--CBEEEEEEETT-EEEEEEEEET
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcC--CceeEEEeCCC-CCCEEEEEeC
Confidence            45678899999999999999998 8999999999999999998887777764  55  55999999993 2479999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccc--cceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCC
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  158 (291)
                      |+.|++||+++.....  .....  ........+++... ........+...+|++...  ....+..|..    ++|+|
T Consensus       140 d~~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~--~~~~~~~h~~~v~~~~~~~  214 (383)
T 3ei3_B          140 RGATTLRDFSGSVIQV--FAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDGH--EIFKEKLHKAKVTHAEFNP  214 (383)
T ss_dssp             TTEEEEEETTSCEEEE--EECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTSC--EEEEEECSSSCEEEEEECS
T ss_pred             CCEEEEEECCCCceEE--EeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCCC--EEEEeccCCCcEEEEEECC
Confidence            9999999998643211  11111  12244444444332 2233344566777777422  2333445544    89999


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCC----cceeeEecccccCCCCCCCCCcceeeeeEEEecC-CCCCCceEEEeecCCCcE
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNT----AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~l~~g~~dg~i  233 (291)
                      +++.+++ +|+.|+.|++||+++    +..+..+.         |    ...+.++. |+| +   +. +|++++.|+.|
T Consensus       215 ~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~---------~----~~~v~~~~-~s~~~---~~-~l~~~~~d~~i  275 (383)
T 3ei3_B          215 RCDWLMA-TSSVDATVKLWDLRNIKDKNSYIAEMP---------H----EKPVNAAY-FNPTD---ST-KLLTTDQRNEI  275 (383)
T ss_dssp             SCTTEEE-EEETTSEEEEEEGGGCCSTTCEEEEEE---------C----SSCEEEEE-ECTTT---SC-EEEEEESSSEE
T ss_pred             CCCCEEE-EEeCCCEEEEEeCCCCCcccceEEEec---------C----CCceEEEE-EcCCC---CC-EEEEEcCCCcE
Confidence            9986666 566799999999998    44555443         2    45678887 999 7   44 89999999999


Q ss_pred             EEEEccCCCCceeeccccc-----------------cceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          234 LVWDIRNPGIPLTAMKVHL-----------------EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~-----------------~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ++||+++ .+....+.+|.                 ..+..++|+|++++  +++.||.|++||+++++.++.+
T Consensus       276 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l  346 (383)
T 3ei3_B          276 RVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL  346 (383)
T ss_dssp             EEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred             EEEECCC-CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence            9999998 66666665543                 33445777777776  8889999999999999887764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=223.17  Aligned_cols=261  Identities=11%  Similarity=0.084  Sum_probs=183.5

Q ss_pred             CCCCCCCCCceEEecCCccceeEEEEcCCCCEE-EEecC---CCeEEEEeCCCCeEEEEEe-eecCCcceEEEEEeecCC
Q 022870            1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPIL-FAGTT---GGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIG   75 (291)
Q Consensus         1 m~~~~~~~~~~~~l~~h~~~v~~l~~~~~~~~l-~s~~~---dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~   75 (291)
                      |.....|......+++|...|++++|+|++..+ ++|+.   ||.|++||+.+++...... .|.  .+|.+++|+|  +
T Consensus         1 m~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~--~~v~~~~~~~--~   76 (357)
T 3i2n_A            1 MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA--KPIKCGTFGA--T   76 (357)
T ss_dssp             ----CCCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES--SCEEEEECTT--C
T ss_pred             CCccChhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeeccc--CcEEEEEEcC--C
Confidence            333344444456678899999999999988654 56665   9999999999887655433 565  4599999999  7


Q ss_pred             ---CCeEEEEeCCCeEEEEECCCCC-CCCCCccccccceEEEEEeec--ccCc---cceeccCCCCceeeecccCccccc
Q 022870           76 ---LNKVISQGRDGTVKCWDIENGG-LSSNPSLTIKTNSYHFCKLSL--VKEP---YANAKQANEPKDCYEREVGETVDT  146 (291)
Q Consensus        76 ---~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  146 (291)
                         +.+|++++.||.|++||+.+++ ...  .+..+........+..  ...+   ........+...+|++........
T Consensus        77 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~  154 (357)
T 3i2n_A           77 SLQQRYLATGDFGGNLHIWNLEAPEMPVY--SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA  154 (357)
T ss_dssp             CTTTCCEEEEETTSCEEEECTTSCSSCSE--EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred             CCCCceEEEecCCCeEEEEeCCCCCccEE--EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence               6999999999999999999876 322  2222333333333221  1122   233344556778888877653333


Q ss_pred             cCCCCC---C-----cc----cCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEec
Q 022870          147 DSLCDS---K-----DD----VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL  214 (291)
Q Consensus       147 ~~~~~~---~-----~~----~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (291)
                      .+..+.   .     ++    |+|++..++  +++.|+.|++||+++++......         |    ...+.++. |+
T Consensus       155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~---------~----~~~v~~~~-~~  218 (357)
T 3i2n_A          155 NMEPVQGENKRDCWTVAFGNAYNQEERVVC--AGYDNGDIKLFDLRNMALRWETN---------I----KNGVCSLE-FD  218 (357)
T ss_dssp             EECCCTTSCCCCEEEEEEECCCC-CCCEEE--EEETTSEEEEEETTTTEEEEEEE---------C----SSCEEEEE-ES
T ss_pred             eccccCCCCCCceEEEEEEeccCCCCCEEE--EEccCCeEEEEECccCceeeecC---------C----CCceEEEE-cC
Confidence            332221   1     33    788887555  56678999999999988755443         3    34577787 99


Q ss_pred             CCCCCCceEEEeecCCCcEEEEEccCCCCceeecc-----ccccceeEEEeecCCC-eeEEecCCCeEEEEEcCCCc
Q 022870          215 PSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       215 p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~~  285 (291)
                      |...++. +|++|+.||.|++||+++ +++...+.     +|...|++++|+|++. +|++++.||.|++||++.+.
T Consensus       219 ~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          219 RKDISMN-KLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             CSSSSCC-EEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             CCCCCCC-EEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            9321144 899999999999999987 66555554     8999999999999998 89999999999999998653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=230.99  Aligned_cols=249  Identities=14%  Similarity=0.176  Sum_probs=191.1

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC----CeEEEEEeeecCCcceEEEEEeecCC-CCeEEEEeCCCeEEE
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIG-LNKVISQGRDGTVKC   90 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~i   90 (291)
                      .|...|++++|+|++.+|++|+.||.|++||+.+    .+.+..+..|...  |.+++|+|  + +++|++++.||.|++
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~~l~s~~~dg~v~i  140 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSS--VKTVKFNA--KQDNVLASGGNNGEIFI  140 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSC--CCEEEECS--SSTTBEEEECSSSCEEB
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccc--eEEEEEcC--CCCCEEEEEcCCCeEEE
Confidence            4889999999999999999999999999999987    4577888888855  99999999  7 789999999999999


Q ss_pred             EECCCCC------CCCCC-ccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCC-----CCC----c
Q 022870           91 WDIENGG------LSSNP-SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-----DSK----D  154 (291)
Q Consensus        91 wd~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~  154 (291)
                      ||+++.+      ..... ....+........+.+............+...+|++............     |..    +
T Consensus       141 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  220 (416)
T 2pm9_A          141 WDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV  220 (416)
T ss_dssp             CBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEE
T ss_pred             EECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEE
Confidence            9999876      21110 011222333344444433333444456677888888776544332221     122    8


Q ss_pred             ccCCCCCcEEEEecCCcC---eEEEEeCCCc-ceeeEecccccCCCCCCCCCcceeeeeEEEecC-CCCCCceEEEeecC
Q 022870          155 DVPAEGPKYMAVAGEQLS---EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGFVNVLAGYE  229 (291)
Q Consensus       155 ~~~~~~~~~~~~~g~~d~---~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~l~~g~~  229 (291)
                      +|+|++..+++ +++.|+   .|++||++++ ++...+..       +|    ...+.++. |+| +   +. +|++++.
T Consensus       221 ~~~~~~~~~l~-~~~~d~~~~~i~~~d~~~~~~~~~~~~~-------~~----~~~v~~~~-~s~~~---~~-~l~s~~~  283 (416)
T 2pm9_A          221 EWHPKNSTRVA-TATGSDNDPSILIWDLRNANTPLQTLNQ-------GH----QKGILSLD-WCHQD---EH-LLLSSGR  283 (416)
T ss_dssp             EECSSCTTEEE-EEECCSSSCCCCEEETTSTTSCSBCCCS-------CC----SSCEEEEE-ECSSC---SS-CEEEEES
T ss_pred             EECCCCCCEEE-EEECCCCCceEEEEeCCCCCCCcEEeec-------Cc----cCceeEEE-eCCCC---CC-eEEEEeC
Confidence            99999877766 455577   9999999986 34444331       23    45678887 999 5   44 8999999


Q ss_pred             CCcEEEEEccCCCCceeeccccccceeEEEeecCC-CeeEEecCCCeEEEEEcCCCce
Q 022870          230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      ||.|++||+++ ++++..+.+|...|++++|+|++ .+|++++.||.|++|++++.+.
T Consensus       284 dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          284 DNTVLLWNPES-AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             SSEEEEECSSS-CCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             CCCEEEeeCCC-CccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            99999999998 88999999999999999999998 8999999999999999988764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.7e-33  Score=227.65  Aligned_cols=235  Identities=17%  Similarity=0.268  Sum_probs=177.0

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      ..++...+.+|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+..|...  |.+++|+|  ++++|++++.||
T Consensus       128 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~s~~~d~  203 (420)
T 3vl1_A          128 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT--VTDIAIID--RGRNVLSASLDG  203 (420)
T ss_dssp             SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC--EEEEEEET--TTTEEEEEETTS
T ss_pred             CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc--EEEEEEcC--CCCEEEEEcCCC
Confidence            34566777899999999999999999999999999999999999999999888855  99999999  999999999999


Q ss_pred             eEEEEECCCCCCCCCCcccc---ccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           87 TVKCWDIENGGLSSNPSLTI---KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                      .|++||+++++...  .+..   .........+.......                   ........-..++|+|++..+
T Consensus       204 ~v~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~l  262 (420)
T 3vl1_A          204 TIRLWECGTGTTIH--TFNRKENPHDGVNSIALFVGTDRQ-------------------LHEISTSKKNNLEFGTYGKYV  262 (420)
T ss_dssp             CEEEEETTTTEEEE--EECBTTBTTCCEEEEEEEECCCSS-------------------CGGGCCCCCCTTCSSCTTEEE
T ss_pred             cEEEeECCCCceeE--EeecCCCCCCCccEEEEecCCcce-------------------eeecccCcccceEEcCCCCEE
Confidence            99999999876433  1111   11112222111111000                   000000011118899999765


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      +  +|+.||.|++||+++++.+..+..       .|    ...+.++. |+|++   ..+|++|+.||.|++||+++...
T Consensus       263 ~--~~~~dg~i~i~d~~~~~~~~~~~~-------~~----~~~v~~~~-~~~~~---~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          263 I--AGHVSGVITVHNVFSKEQTIQLPS-------KF----TCSCNSLT-VDGNN---ANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             E--EEETTSCEEEEETTTCCEEEEECC-------TT----SSCEEEEE-ECSSC---TTEEEEEETTSEEEEEETTCTTS
T ss_pred             E--EEcCCCeEEEEECCCCceeEEccc-------cc----CCCceeEE-EeCCC---CCEEEEEeCCCeEEEEEcCCCcC
Confidence            4  566799999999999988877763       33    45677887 99983   33899999999999999998556


Q ss_pred             ceeeccc-cccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          244 PLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       244 ~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      ++..+.+ |...|.++.+ +++.+|++++.||.|++|++...
T Consensus       326 ~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          326 PVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             CSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred             chhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence            6788877 5667887755 46789999999999999998873

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.8e-32  Score=227.13  Aligned_cols=254  Identities=15%  Similarity=0.197  Sum_probs=193.1

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      ..+++..+.+|.+.|++++|+|++ +|++|+.||+|++||+++++++..+..|...  |.+++|++..++.++++++.||
T Consensus       151 ~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~l~s~s~d~  227 (464)
T 3v7d_B          151 NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNST--VRCLDIVEYKNIKYIVTGSRDN  227 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEEESSSCEEEEEEETTS
T ss_pred             CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCc--cEEEEEecCCCCCEEEEEcCCC
Confidence            346788899999999999999988 9999999999999999999999999988855  9999999643778999999999


Q ss_pred             eEEEEECCCCCCCCCC-------------------ccccccceEEEEEeecccCccceeccCCCCceeeecccCcccccc
Q 022870           87 TVKCWDIENGGLSSNP-------------------SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD  147 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (291)
                      +|++||+++.......                   ......+......+... ..........+...+|++....... .
T Consensus       228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~-~  305 (464)
T 3v7d_B          228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLY-I  305 (464)
T ss_dssp             CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEE-E
T ss_pred             cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEE-E
Confidence            9999999877543210                   00111111111111111 1123334445677888887655433 3


Q ss_pred             CCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceE
Q 022870          148 SLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (291)
Q Consensus       148 ~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  223 (291)
                      +.+|..    ++|+|+++.++  +|+.||.|++||+++++++..+.        +|.    ..+.++. |++.      +
T Consensus       306 ~~~~~~~v~~~~~~~~~~~l~--sg~~dg~i~vwd~~~~~~~~~~~--------~h~----~~v~~~~-~~~~------~  364 (464)
T 3v7d_B          306 LSGHTDRIYSTIYDHERKRCI--SASMDTTIRIWDLENGELMYTLQ--------GHT----ALVGLLR-LSDK------F  364 (464)
T ss_dssp             ECCCSSCEEEEEEETTTTEEE--EEETTSCEEEEETTTTEEEEEEC--------CCS----SCEEEEE-ECSS------E
T ss_pred             ecCCCCCEEEEEEcCCCCEEE--EEeCCCcEEEEECCCCcEEEEEe--------CCC----CcEEEEE-EcCC------E
Confidence            345544    89999987655  67779999999999999999887        663    4566776 8754      8


Q ss_pred             EEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       224 l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      |++|+.||.|++||+++ ....... .|...+..++|++++.+|++++ ||.|++||++++++++.
T Consensus       365 l~s~s~dg~v~vwd~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          365 LVSAAADGSIRGWDAND-YSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             EEEEETTSEEEEEETTT-CCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             EEEEeCCCcEEEEECCC-Cceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence            99999999999999998 5544444 3567788899999999999998 99999999999998875

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=233.24  Aligned_cols=253  Identities=14%  Similarity=0.164  Sum_probs=182.6

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-----------EEEEEeeecCC----------cceEEEEEeecCC
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----------TVSSSWVHSAA----------HGIVSVATGPSIG   75 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~----------~~v~~~~~~~~~~   75 (291)
                      |.+.|++++|+|+|.+||+|+.||.|+|||+.+++           ....+.+|...          .+|.+++|+|  +
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~--~  104 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP--Q  104 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC--C
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC--C
Confidence            67899999999999999999999999999998776           57778888621          3499999999  7


Q ss_pred             C--CeEEEEeCCCeEEEEECCCCCCCC----------------------CC---------------c-cccccceEEEEE
Q 022870           76 L--NKVISQGRDGTVKCWDIENGGLSS----------------------NP---------------S-LTIKTNSYHFCK  115 (291)
Q Consensus        76 ~--~~l~s~~~dg~i~iwd~~~~~~~~----------------------~~---------------~-~~~~~~~~~~~~  115 (291)
                      +  .+|++++.|++|++||+.+.....                      .+               . ...+........
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            6  789999999999999987633210                      00               0 011222223333


Q ss_pred             eecccCccceeccCCCCceeeecccCccccc-------cCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcce
Q 022870          116 LSLVKEPYANAKQANEPKDCYEREVGETVDT-------DSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER  184 (291)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~  184 (291)
                      +++.......  ...+...+|++........       .+.+|..    ++|+|++..+++ +|+.||.|++||+++++.
T Consensus       185 ~~~~~~~l~s--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          185 INSDYETYLS--ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV-YSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             ECTTSSEEEE--ECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE-EEETTSCEEEEETTTCSS
T ss_pred             EcCCCCEEEE--eCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE-EEeCCCeEEEEECcCCcc
Confidence            3333222222  2466677888874332211       2445555    899999855555 566799999999999886


Q ss_pred             ----eeEecccccCCCCCCCCC--------cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc
Q 022870          185 ----CTRLHQNSCGGSPNFSSK--------GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL  252 (291)
Q Consensus       185 ----~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~  252 (291)
                          ...+.        +|...        ....+.++. |+|+   |+ +|++++. +.|++||+++.++++..+.+|.
T Consensus       262 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~-~s~~---g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~  327 (447)
T 3dw8_B          262 CDRHSKLFE--------EPEDPSNRSFFSEIISSISDVK-FSHS---GR-YMMTRDY-LSVKVWDLNMENRPVETYQVHE  327 (447)
T ss_dssp             SCTTCEEEC--------CC-----CCHHHHHTTCEEEEE-ECTT---SS-EEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred             ccceeeEec--------cCCCccccccccccCceEEEEE-ECCC---CC-EEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence                56666        34221        012678887 9998   54 8999988 9999999987578888888886


Q ss_pred             cc---------------eeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          253 EP---------------VLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       253 ~~---------------v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      ..               +..++|+|++.+|++|+.||.|++||+++++.+.
T Consensus       328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence            42               2349999999999999999999999999988753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.1e-32  Score=219.43  Aligned_cols=249  Identities=13%  Similarity=0.083  Sum_probs=187.2

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe---EEEEEeeecCCcceEEEEEeecCCCC-eEEEEeCCC
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDG   86 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg   86 (291)
                      +....+|.+.|++++|+|++.+|++++.||.|++||+.+++   ....+..|..  +|.+++|+|  ++. +|++++.||
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~~l~~~~~dg   79 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLCCNFID--NTDLQIYVGTVQG   79 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS--CEEEEEEEE--SSSEEEEEEETTS
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCC--ceEEEEECC--CCCcEEEEEcCCC
Confidence            34456899999999999999999999999999999998776   3444556764  499999999  889 999999999


Q ss_pred             eEEEEEC-CCCCCCCCCcccc--ccceEEEEEeecccCccceeccCCCCceeeeccc---------CccccccCCCCCC-
Q 022870           87 TVKCWDI-ENGGLSSNPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV---------GETVDTDSLCDSK-  153 (291)
Q Consensus        87 ~i~iwd~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-  153 (291)
                      .|++||+ .+++..   .+..  +........+..  ..........+...+|++..         ..... .+. +.. 
T Consensus        80 ~i~~wd~~~~~~~~---~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~-~~~~  152 (342)
T 1yfq_A           80 EILKVDLIGSPSFQ---ALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-NTK-VKNK  152 (342)
T ss_dssp             CEEEECSSSSSSEE---ECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS-SSS-SCCC
T ss_pred             eEEEEEeccCCceE---eccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeee-EEe-eCCc
Confidence            9999999 776531   2222  334444555554  33344445556677787765         33222 222 333 


Q ss_pred             ---cccCCCCCcEEEEecCCcCeEEEEeCCC-cceee-EecccccCCCCCCCCCcceeeeeEEEecC-CCCCCceEEEee
Q 022870          154 ---DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGFVNVLAG  227 (291)
Q Consensus       154 ---~~~~~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~l~~g  227 (291)
                         ++|+|++  + + +++.|+.|++||+++ +.... ....       .|    ...+.++. |+| +   +. ++++|
T Consensus       153 v~~~~~~~~~--l-~-~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~----~~~i~~i~-~~~~~---~~-~l~~~  212 (342)
T 1yfq_A          153 IFTMDTNSSR--L-I-VGMNNSQVQWFRLPLCEDDNGTIEES-------GL----KYQIRDVA-LLPKE---QE-GYACS  212 (342)
T ss_dssp             EEEEEECSSE--E-E-EEESTTEEEEEESSCCTTCCCEEEEC-------SC----SSCEEEEE-ECSGG---GC-EEEEE
T ss_pred             eEEEEecCCc--E-E-EEeCCCeEEEEECCccccccceeeec-------CC----CCceeEEE-ECCCC---CC-EEEEE
Confidence               8888876  3 3 556689999999998 55322 2221       22    34567776 999 7   44 89999


Q ss_pred             cCCCcEEEEEccCC-----CCceeecccccc---------ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          228 YEDGSILVWDIRNP-----GIPLTAMKVHLE---------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       228 ~~dg~i~vwd~~~~-----~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +.||.|++||++..     .+....+..|..         .|++++|+|++++|++++.||.|++||+++++.+..+
T Consensus       213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  289 (342)
T 1yfq_A          213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh
Confidence            99999999999884     277788888865         9999999999999999999999999999999887654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-33  Score=228.28  Aligned_cols=238  Identities=14%  Similarity=0.212  Sum_probs=185.6

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      |.+.|++++|+|++.+|++|+.||.|++|| .+++.+..+..|...  |.+++|+|  ++++|++++.||.|++||+.++
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~  181 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAP--IVSVKWNK--DGTHIISMDVENVTILWNVISG  181 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSC--EEEEEECT--TSSEEEEEETTCCEEEEETTTT
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCcc--EEEEEECC--CCCEEEEEecCCeEEEEECCCC
Confidence            788999999999999999999999999999 678888888888855  99999999  9999999999999999999887


Q ss_pred             CCCCCCccccccceEE---------------EEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccC
Q 022870           97 GLSSNPSLTIKTNSYH---------------FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (291)
                      +...    .+......               ...+..............+...+|++....... .+..|..    ++|+
T Consensus       182 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~-~~~~~~~~i~~~~~~  256 (425)
T 1r5m_A          182 TVMQ----HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG-KLIGHHGPISVLEFN  256 (425)
T ss_dssp             EEEE----EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSE-EECCCSSCEEEEEEE
T ss_pred             cEEE----EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceee-eeccCCCceEEEEEC
Confidence            6433    11111111               111111111223333444566677776654332 2334444    8999


Q ss_pred             CCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (291)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (291)
                      |+++.++  +++.|+.|++||+++++.+..+.        +|    ...+.++. |+|+   +  ++++++.||.|++||
T Consensus       257 ~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~--~l~~~~~d~~i~i~d  316 (425)
T 1r5m_A          257 DTNKLLL--SASDDGTLRIWHGGNGNSQNCFY--------GH----SQSIVSAS-WVGD---D--KVISCSMDGSVRLWS  316 (425)
T ss_dssp             TTTTEEE--EEETTSCEEEECSSSBSCSEEEC--------CC----SSCEEEEE-EETT---T--EEEEEETTSEEEEEE
T ss_pred             CCCCEEE--EEcCCCEEEEEECCCCccceEec--------CC----CccEEEEE-ECCC---C--EEEEEeCCCcEEEEE
Confidence            9997554  56679999999999998888886        45    34567776 9997   4  799999999999999


Q ss_pred             ccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      +++ ++.+..+..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus       317 ~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          317 LKQ-NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             TTT-TEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             CCC-CcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            998 88889999999999999999999999999999999999998877

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.6e-33  Score=229.06  Aligned_cols=253  Identities=15%  Similarity=0.169  Sum_probs=193.8

Q ss_pred             EEecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCC----------CeEEEEEeeecCCcceEEEEEeecCCCC-eE
Q 022870           12 AVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ----------HRTVSSSWVHSAAHGIVSVATGPSIGLN-KV   79 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l   79 (291)
                      ....+|.+.|++++|+|+ +.+|++++.||.|++||+.+          .+.+..+..|...  |.+++|+|  ++. +|
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~--~~~~~l  197 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE--GYGLSWNP--NLNGYL  197 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSC--CCCEEECT--TSTTEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCC--eEEEEeCC--CCCCeE
Confidence            455679999999999997 77999999999999999976          5677788888855  99999999  777 99


Q ss_pred             EEEeCCCeEEEEECCCCCCCCC-----CccccccceEEEEEeecccCccceeccCCCCceeeecccCc--cccccCCCCC
Q 022870           80 ISQGRDGTVKCWDIENGGLSSN-----PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCDS  152 (291)
Q Consensus        80 ~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  152 (291)
                      ++|+.||.|++||+........     ..+..+........+.+............+.+.+|+++...  .....+..|.
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence            9999999999999987432110     01122333444555554334444455566778888887663  2233333554


Q ss_pred             C----cccCCCCCcEEEEecCCcCeEEEEeCCC-cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee
Q 022870          153 K----DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (291)
Q Consensus       153 ~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g  227 (291)
                      .    ++|+|+++++++ +|+.||.|++||+++ .+++..+.        +|    ...+.++. |+|++   ..+|+++
T Consensus       278 ~~v~~i~~~p~~~~~l~-tg~~dg~v~vwd~~~~~~~~~~~~--------~h----~~~v~~i~-~sp~~---~~~l~s~  340 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILA-TGSADKTVALWDLRNLKLKLHSFE--------SH----KDEIFQVQ-WSPHN---ETILASS  340 (430)
T ss_dssp             SCEEEEEECSSCTTEEE-EEETTSEEEEEETTCTTSCSEEEE--------CC----SSCEEEEE-ECSSC---TTEEEEE
T ss_pred             CCeEEEEeCCCCCCEEE-EEeCCCeEEEEeCCCCCCCeEEee--------cC----CCCEEEEE-ECCCC---CCEEEEE
Confidence            4    899999988776 566799999999998 45667776        55    44677887 99983   3379999


Q ss_pred             cCCCcEEEEEccCCC-------------CceeeccccccceeEEEeecCCC-eeEEecCCCeEEEEEcCCCc
Q 022870          228 YEDGSILVWDIRNPG-------------IPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       228 ~~dg~i~vwd~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~~  285 (291)
                      +.||.|++||++..+             +.+..+.+|...|++++|+|++. +|++++.||.|++|++....
T Consensus       341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence            999999999998622             55677788999999999999999 89999999999999997543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-34  Score=248.12  Aligned_cols=256  Identities=16%  Similarity=0.162  Sum_probs=186.0

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCC--CCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +.++.+|.++|++++|+|++++|++|+.||.|++||+.  +++.+..+..|...  |.+++|+|..++++|++|+.||.|
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~--V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP--VWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSC--EEEEEECCTTSCSEEEEEETTSCE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCc--eEEEEecCCCCCCEEEEEeCCCeE
Confidence            45789999999999999999999999999999999987  45677788888755  999999982228999999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeeccc-CccceeccCCCCceeeecccCcc-ccccCCCCCC----cccCCC---
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGET-VDTDSLCDSK----DDVPAE---  159 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~---  159 (291)
                      ++||+.+++.........+........+++.. ..........+...+|++..... ......+|..    ++|+|.   
T Consensus        80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~  159 (753)
T 3jro_A           80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (753)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred             EEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence            99999987521111222333445555555442 22344445566778888876632 2223344544    889984   


Q ss_pred             ----------CCcEEEEecCCcCeEEEEeCCCcc----eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEE
Q 022870          160 ----------GPKYMAVAGEQLSEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (291)
Q Consensus       160 ----------~~~~~~~~g~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (291)
                                +..++  +|+.||.|++||++++.    ....+.        +|    ...+.++. |+|++..+. +|+
T Consensus       160 ~~~~~~~~~d~~~l~--sgs~dg~I~iwd~~~~~~~~~~~~~~~--------~h----~~~V~~l~-~sp~~~~~~-~l~  223 (753)
T 3jro_A          160 EDGEHNGTKESRKFV--TGGADNLVKIWKYNSDAQTYVLESTLE--------GH----SDWVRDVA-WSPTVLLRS-YLA  223 (753)
T ss_dssp             -------CGGGCCEE--EEETTSCEEEEEEETTTTEEEEEEEEC--------CC----SSCEEEEE-ECCCCSSSE-EEE
T ss_pred             cccccccCCCCCEEE--EEECCCeEEEEeccCCcccceeeeeec--------CC----CCcEEEEE-eccCCCCCC-EEE
Confidence                      55444  56679999999998874    334444        45    44678887 999831133 999


Q ss_pred             eecCCCcEEEEEccCCCC----ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          226 AGYEDGSILVWDIRNPGI----PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       226 ~g~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      +|+.||.|++||+++...    .......|...|++++|+|++.+|++++.||.|++|+++.+
T Consensus       224 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             EEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             EEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            999999999999987321    34445568899999999999999999999999999999854

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.1e-34  Score=230.22  Aligned_cols=247  Identities=13%  Similarity=0.098  Sum_probs=172.9

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC--eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      .++.|.++|++++|+|++++|++|+.|+.|++||+.++  +.+..+..|...  |.+++|+|  ++++|++++.|++|++
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~--v~~~~~s~--~~~~l~s~s~d~~v~v   81 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKI--VTCVDWAP--KSNRIVTCSQDRNAYV   81 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSC--EEEEEECT--TTCCEEEEETTSSEEE
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCce--EEEEEEeC--CCCEEEEEeCCCeEEE
Confidence            34557789999999999999999999999999999988  677788888855  99999999  9999999999999999


Q ss_pred             EECCCCC-CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc--ccccCCC-CCC----cccCCCCCc
Q 022870           91 WDIENGG-LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--VDTDSLC-DSK----DDVPAEGPK  162 (291)
Q Consensus        91 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~----~~~~~~~~~  162 (291)
                      ||+.+++ .........+........+++... ........+...+|+++....  ....+.. |..    ++|+|++..
T Consensus        82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  160 (377)
T 3dwl_C           82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL  160 (377)
T ss_dssp             C------CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred             EEcCCCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence            9999876 211111122333444444444322 223334456677788776653  2333344 555    899999875


Q ss_pred             EEEEecCCcCeEEEEeCCCccee--------------eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERC--------------TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (291)
                      ++  +++.|+.|++||++..+..              .....       ..  .....+.++. |+|+   ++ +|++|+
T Consensus       161 l~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~v~~~~-~sp~---~~-~l~~~~  224 (377)
T 3dwl_C          161 LA--AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA-------EY--PSGGWVHAVG-FSPS---GN-ALAYAG  224 (377)
T ss_dssp             EE--EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE-------CC--CCSSSEEEEE-ECTT---SS-CEEEEE
T ss_pred             EE--EEeCCCEEEEEEEEecccCCCccccccccccchhhhhh-------cc--cCCceEEEEE-ECCC---CC-EEEEEe
Confidence            54  5667999999999643211              11110       00  2345678887 9998   44 899999


Q ss_pred             CCCcEEEEEccCCCCc----eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          229 EDGSILVWDIRNPGIP----LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       229 ~dg~i~vwd~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      .||.|++||+++ ++.    +..+.+|...|.+++|+|++++|++++.|+.+ +|+..
T Consensus       225 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          225 HDSSVTIAYPSA-PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             TTTEEC-CEECS-TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCCcEEEEECCC-CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            999999999998 655    78899999999999999999999999877666 66665

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.8e-32  Score=230.38  Aligned_cols=249  Identities=18%  Similarity=0.275  Sum_probs=188.2

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      ..+.+..+.+|...|++++|+|++.+|++++.|++|++||.. ++.+..+..|...  |.+++|+|  ++.+|++++.||
T Consensus       292 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~--v~~~~~s~--~g~~l~~~~~dg  366 (577)
T 2ymu_A          292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSS--VWGVAFSP--DGQTIASASDDK  366 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSC--EEEEEECT--TSSEEEEEETTS
T ss_pred             CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCC--EEEEEECC--CCCEEEEEeCCC
Confidence            346678899999999999999999999999999999999976 4556677778754  99999999  999999999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCc
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK  162 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  162 (291)
                      .|++||... +...  .+..+........+++...... .........+|+...  .....+.+|..    ++|+|++..
T Consensus       367 ~v~~~~~~~-~~~~--~~~~~~~~v~~~~~s~dg~~l~-~~~~d~~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~  440 (577)
T 2ymu_A          367 TVKLWNRNG-QLLQ--TLTGHSSSVRGVAFSPDGQTIA-SASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQT  440 (577)
T ss_dssp             EEEEEETTC-CEEE--EEECCSSCEEEEEECTTSSCEE-EEETTSEEEEECTTC--CEEEEEECCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCCC-CEEE--EecCCCCCeEEEEECCCCCEEE-EEeCCCEEEEEeCCC--CEEEEecCCCCCeEEEEECCCCCE
Confidence            999999643 3221  1222333444444444332222 222334455666432  22233445555    899999976


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                      ++  +++.|+.|++||.. ++.+..+.        +|.    ..+.+++ |+|+   ++ +|++++.|+.|++||..  +
T Consensus       441 l~--~~~~d~~v~~w~~~-~~~~~~~~--------~~~----~~v~~~~-~spd---~~-~las~~~d~~i~iw~~~--~  498 (577)
T 2ymu_A          441 IA--SASDDKTVKLWNRN-GQLLQTLT--------GHS----SSVRGVA-FSPD---GQ-TIASASDDKTVKLWNRN--G  498 (577)
T ss_dssp             EE--EEETTSEEEEEETT-SCEEEEEE--------CCS----SCEEEEE-ECTT---SC-EEEEEETTSEEEEEETT--S
T ss_pred             EE--EEcCCCEEEEEECC-CCEEEEEc--------CCC----CCEEEEE-EcCC---CC-EEEEEeCCCEEEEEcCC--C
Confidence            54  56679999999974 56667776        563    4567776 9998   44 99999999999999964  7


Q ss_pred             CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      +++..+.+|...|++++|+|++++|++++.||.|++||.. ++++++
T Consensus       499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~  544 (577)
T 2ymu_A          499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT  544 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEE
T ss_pred             CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CCEEEE
Confidence            8899999999999999999999999999999999999964 555544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.3e-32  Score=223.94  Aligned_cols=213  Identities=17%  Similarity=0.287  Sum_probs=169.0

Q ss_pred             CceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeeecCCcceEEEEEeecCCC-CeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGL-NKV   79 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l   79 (291)
                      +.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++       +.+..+..|...  |.+++|+|  ++ ++|
T Consensus        72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~p--~~~~~l  147 (402)
T 2aq5_A           72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR--VGIVAWHP--TAQNVL  147 (402)
T ss_dssp             TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSC--EEEEEECS--SBTTEE
T ss_pred             CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCe--EEEEEECc--CCCCEE
Confidence            34567889999999999999 9999999999999999999887       567788888855  99999999  87 699


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCcccc--ccceE-EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCccc
Q 022870           80 ISQGRDGTVKCWDIENGGLSSNPSLTI--KTNSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV  156 (291)
Q Consensus        80 ~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (291)
                      ++++.||.|++||+++++...    .+  ..+.. ..+                                       ++|
T Consensus       148 ~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~v~~---------------------------------------~~~  184 (402)
T 2aq5_A          148 LSAGCDNVILVWDVGTGAAVL----TLGPDVHPDTIYS---------------------------------------VDW  184 (402)
T ss_dssp             EEEETTSCEEEEETTTTEEEE----EECTTTCCSCEEE---------------------------------------EEE
T ss_pred             EEEcCCCEEEEEECCCCCccE----EEecCCCCCceEE---------------------------------------EEE
Confidence            999999999999999875422    22  11110 001                                       669


Q ss_pred             CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee---cCCCcE
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSI  233 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i  233 (291)
                      +|++..++  +++.|+.|++||+++++.+..+..       +|..   ..+..+. |+|+   ++ +|++|   +.|+.|
T Consensus       185 ~~~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~---~~~~~~~-~~~~---~~-~l~~g~~~~~d~~i  247 (402)
T 2aq5_A          185 SRDGALIC--TSCRDKRVRVIEPRKGTVVAEKDR-------PHEG---TRPVHAV-FVSE---GK-ILTTGFSRMSERQV  247 (402)
T ss_dssp             CTTSSCEE--EEETTSEEEEEETTTTEEEEEEEC-------SSCS---SSCCEEE-ECST---TE-EEEEEECTTCCEEE
T ss_pred             CCCCCEEE--EEecCCcEEEEeCCCCceeeeecc-------CCCC---CcceEEE-EcCC---Cc-EEEEeccCCCCceE
Confidence            99987665  566799999999999998888732       4532   2355565 9997   54 88888   799999


Q ss_pred             EEEEccCCCCceeecc-ccccceeEEEeecCCCeeE-EecCCCeEEEEEcCCCc
Q 022870          234 LVWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHST  285 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~-s~s~dg~i~vw~~~~~~  285 (291)
                      ++||+++...++.... .|...+.+++|+|++.+|+ +|+.||.|++||+++++
T Consensus       248 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          248 ALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             EEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            9999998444444443 5678899999999999986 56679999999999887

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.3e-33  Score=222.94  Aligned_cols=251  Identities=17%  Similarity=0.196  Sum_probs=181.6

Q ss_pred             CCccceeEEEEcCC---CCEEEEecCCCeEEEEeCCCCe-EEEEEeeecCCcceEEEEE------eecCCCCeEEEEeCC
Q 022870           16 GHRASVTDVCFHQT---KPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVAT------GPSIGLNKVISQGRD   85 (291)
Q Consensus        16 ~h~~~v~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~------~~~~~~~~l~s~~~d   85 (291)
                      +|..+|++++|+|+   +.+|++|+.||.|++||+.+++ .+..+..|...  |.++.|      +|  ++++|++++.|
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~s~--~~~~l~~~~~d  138 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEI--INAIDGIGGLGIGE--GAPEIVTGSRD  138 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSC--EEEEEEESGGGCC---CCCEEEEEETT
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccc--eEEEeeccccccCC--CccEEEEEeCC
Confidence            79999999999998   6999999999999999999887 88888888855  999965      56  88999999999


Q ss_pred             CeEEEEECCCCCCCCCCcccccc----ceEEEEEeecccCcc---ceeccCCCCceeeecccCccccccCCCCCC----c
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKT----NSYHFCKLSLVKEPY---ANAKQANEPKDCYEREVGETVDTDSLCDSK----D  154 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  154 (291)
                      |.|++||+++++.... .+....    .......+.+...+.   .......+...+|+++.......  ..+..    +
T Consensus       139 ~~i~vwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~~~  215 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVA-NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVCSL  215 (357)
T ss_dssp             SCEEEECTTSCSSCSE-EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEE
T ss_pred             CeEEEEeCCCCCCcce-eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceEEE
Confidence            9999999998762211 111111    133333333222222   22333446677788877664322  22222    8


Q ss_pred             ccCC---CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC
Q 022870          155 DVPA---EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (291)
Q Consensus       155 ~~~~---~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (291)
                      +|+|   ++..++  +++.||.|++||+++++....+....   ..+|    ...+.++. |+|+   ++.+|++|+.||
T Consensus       216 ~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~----~~~v~~~~-~~~~---~~~~l~~~~~dg  282 (357)
T 3i2n_A          216 EFDRKDISMNKLV--ATSLEGKFHVFDMRTQHPTKGFASVS---EKAH----KSTVWQVR-HLPQ---NRELFLTAGGAG  282 (357)
T ss_dssp             EESCSSSSCCEEE--EEESTTEEEEEEEEEEETTTEEEEEE---EECC----SSCEEEEE-EETT---EEEEEEEEETTS
T ss_pred             EcCCCCCCCCEEE--EECCCCeEEEEeCcCCCcccceeeec---cCCC----cCCEEEEE-ECCC---CCcEEEEEeCCC
Confidence            9999   776554  45669999999999876654443100   0023    45677887 9997   444799999999


Q ss_pred             cEEEEEccCCC------------------CceeeccccccceeEEEeecCCCeeE-EecCCCeEEEEEcCCCce
Q 022870          232 SILVWDIRNPG------------------IPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       232 ~i~vwd~~~~~------------------~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~vw~~~~~~~  286 (291)
                      .|++||+++..                  +++..+.+|...|++++|+|++++|+ +++.||.|++||+.+..+
T Consensus       283 ~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          283 GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            99999998632                  24667888999999999999999998 899999999999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.6e-31  Score=212.06  Aligned_cols=237  Identities=16%  Similarity=0.228  Sum_probs=180.1

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~   93 (291)
                      +|...|++++|+|++++|++++.||.|++||+.+++  ....+..|..  .|.+++|+|  ++++|++++.||.|++||+
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~i~~~~~~~--~~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP--ACYALAISP--DSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS--CEEEEEECT--TSSEEEEEETTSCEEEEET
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC--ceEEEEECC--CCCEEEEEeCCCcEEEEeC
Confidence            799999999999999999999999999999999877  5556666664  499999999  9999999999999999999


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEEEecCCc
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d  171 (291)
                      ++++...  .+..+........+.+... ........+...+|++...............  ++|+|+++.++  +++.|
T Consensus       171 ~~~~~~~--~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~~~~~  245 (337)
T 1gxr_A          171 HNQTLVR--QFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA--VGMES  245 (337)
T ss_dssp             TTTEEEE--EECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEE--EEETT
T ss_pred             CCCceee--eeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEE--EEcCC
Confidence            9876433  2222333444444444332 2223334566777887766544332211111  89999997655  45568


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (291)
                      +.|++||+++++.. .+.        .|    ...+.++. |+|+   ++ +|++++.||.|++||+++ ++.+.. ..|
T Consensus       246 ~~i~~~~~~~~~~~-~~~--------~~----~~~v~~~~-~~~~---~~-~l~~~~~dg~i~~~~~~~-~~~~~~-~~~  305 (337)
T 1gxr_A          246 SNVEVLHVNKPDKY-QLH--------LH----ESCVLSLK-FAYC---GK-WFVSTGKDNLLNAWRTPY-GASIFQ-SKE  305 (337)
T ss_dssp             SCEEEEETTSSCEE-EEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSEEEEEETTT-CCEEEE-EEC
T ss_pred             CcEEEEECCCCCeE-EEc--------CC----ccceeEEE-ECCC---CC-EEEEecCCCcEEEEECCC-CeEEEE-ecC
Confidence            99999999988654 333        34    44677787 9998   44 899999999999999998 666543 457


Q ss_pred             ccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          252 LEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      ...|.+++|+|++++|++++.||.|++|++
T Consensus       306 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          306 SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            899999999999999999999999999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.2e-32  Score=220.21  Aligned_cols=242  Identities=12%  Similarity=0.086  Sum_probs=167.9

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeE-EEEeCCCe
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGT   87 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~   87 (291)
                      +++..+.+|.+.|++++|+|+|++|++|+.|+ +++||+++++.......+    .+..+++.+  +++.+ ++++.|++
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~d~~   82 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLH--RTNYVAFVTGVKEV   82 (355)
T ss_dssp             ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECT--TSSEEEEECSSTTE
T ss_pred             CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcC--CCCEEEEEECCccE
Confidence            45667789999999999999999999998775 789999877666543322    277788888  66666 57888899


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccC-ccccccCCCCCC-cccCCCCCcEEE
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG-ETVDTDSLCDSK-DDVPAEGPKYMA  165 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~  165 (291)
                      |++||..+++...  .+... .......    ..+............+|++... +.... +..... .++++  ..+++
T Consensus        83 v~iWd~~~~~~~~--~~~~~-~~v~~v~----~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~~~~~s~--~~la~  152 (355)
T 3vu4_A           83 VHIWDDVKKQDVS--RIKVD-APVKDLF----LSREFIVVSYGDVISVFKFGNPWKRITD-DIRFGGVCEFSN--GLLVY  152 (355)
T ss_dssp             EEEEETTTTEEEE--EEECS-SCEEEEE----ECSSEEEEEETTEEEEEESSTTCCBSSC-CEEEEEEEEEET--TEEEE
T ss_pred             EEEEECCCCcEEE--EEECC-CceEEEE----EcCCEEEEEEcCEEEEEECCCCceeeEE-eccCCceEEEEc--cEEEE
Confidence            9999999886543  11211 1222222    2223333334556777777665 32221 111111 56666  33433


Q ss_pred             EecCCcCeEEEEeCCCcce----------------eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC
Q 022870          166 VAGEQLSEVEIWDLNTAER----------------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (291)
                      ++|+.||.|++||+++++.                +..+.        +|    ...+.+++ |+|+   |+ +|++|+.
T Consensus       153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~--------~h----~~~v~~~~-~s~~---g~-~l~s~s~  215 (355)
T 3vu4_A          153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK--------AH----TNPIKMVR-LNRK---SD-MVATCSQ  215 (355)
T ss_dssp             EESSCTTCEEEEECCC------------------CCEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEET
T ss_pred             eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE--------cc----CCceEEEE-ECCC---CC-EEEEEeC
Confidence            3388899999999998651                44555        56    45678887 9998   44 9999999


Q ss_pred             CCc-EEEEEccCCCCceeecc-c-cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          230 DGS-ILVWDIRNPGIPLTAMK-V-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       230 dg~-i~vwd~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      ||. |++||+++ ++++..+. + |...|++++|+|++++|++++.|+.|++||++.+.
T Consensus       216 d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          216 DGTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             TCSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             CCCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            998 99999998 88888888 5 99999999999999999999999999999998653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.4e-32  Score=216.14  Aligned_cols=264  Identities=14%  Similarity=0.166  Sum_probs=185.6

Q ss_pred             CCCCceEEecCCccceeEEEEcCC---CCEEEEecCCCeEEEEeCCC-CeEE-EEEeeecCCcceEEEEEeecCCCCeEE
Q 022870            6 PPPDPVAVLRGHRASVTDVCFHQT---KPILFAGTTGGELRIWDTVQ-HRTV-SSSWVHSAAHGIVSVATGPSIGLNKVI   80 (291)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~l~~~~~---~~~l~s~~~dg~v~iwd~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (291)
                      .|.+.+..+.+|.+.|++++|+|+   |.+|++|+.||.|++||+.+ +..+ ..+..|...  |.+++|+|  ++++|+
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~  102 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGP--VLDVCWSD--DGSKVF  102 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSC--EEEEEECT--TSSEEE
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCC--EEEEEECc--CCCEEE
Confidence            456788899999999999999998   69999999999999999987 5444 677788755  99999999  999999


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCc-cceeccCCCCceeeecccCccccccCCCCCC-cccCC
Q 022870           81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPA  158 (291)
Q Consensus        81 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  158 (291)
                      +++.||.|++||+++++...   ...+........+...... ........+...+|++......... ..+.. .++.+
T Consensus       103 s~~~dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~  178 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQ---IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL-QLPERCYCADV  178 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEE---EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE-ECSSCEEEEEE
T ss_pred             EEcCCCcEEEEEcCCCCcee---eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE-ecCCCceEEEe
Confidence            99999999999999876432   1222333344433212222 2333344566777887765533322 22223 34444


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (291)
                      ....+++  +..++.+++||++..........        ........+.++. +.+..  ....+++|+.||.|++||+
T Consensus       179 ~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~dg~i~i~~~  245 (368)
T 3mmy_A          179 IYPMAVV--ATAERGLIVYQLENQPSEFRRIE--------SPLKHQHRCVAIF-KDKQN--KPTGFALGSIEGRVAIHYI  245 (368)
T ss_dssp             ETTEEEE--EEGGGCEEEEECSSSCEEEEECC--------CSCSSCEEEEEEE-ECTTS--CEEEEEEEETTSEEEEEES
T ss_pred             cCCeeEE--EeCCCcEEEEEeccccchhhhcc--------ccccCCCceEEEc-ccCCC--CCCeEEEecCCCcEEEEec
Confidence            4444443  34478999999987655443331        1111233344333 33321  1115999999999999999


Q ss_pred             cCCC--Cceeecccccc------------ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          239 RNPG--IPLTAMKVHLE------------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       239 ~~~~--~~~~~~~~h~~------------~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +...  ..+..+.+|..            .|++++|+|++++|++++.||.|++||+++++.+..+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence            8722  45667777776            7999999999999999999999999999999887654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.4e-32  Score=219.86  Aligned_cols=252  Identities=12%  Similarity=0.037  Sum_probs=184.7

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEE--eeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      ++..+.+|...|++++|+|++++|++++.||.|++||+++++....+  ..|.  ..|.+++|+|  ++++|++++.|+.
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~  119 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN--RAARCVRWAP--NEKKFAVGSGSRV  119 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS--SCEEEEEECT--TSSEEEEEETTSS
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC--CceeEEEECC--CCCEEEEEeCCCE
Confidence            67889999999999999999999999999999999999888765554  3455  5599999999  9999999999999


Q ss_pred             EEEEECCCCCCCC--CCccccccceEEEEEeecccCccceeccCCCCceeeeccc-----------------CccccccC
Q 022870           88 VKCWDIENGGLSS--NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-----------------GETVDTDS  148 (291)
Q Consensus        88 i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~  148 (291)
                      |++||++......  ......+........+.+... ........+...+|++..                 .......+
T Consensus       120 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
T 1k8k_C          120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES  198 (372)
T ss_dssp             EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred             EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence            9999998765211  001111223344444444322 222334456677787531                 12223334


Q ss_pred             CCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEE
Q 022870          149 LCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (291)
Q Consensus       149 ~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l  224 (291)
                      ..|..    ++|+|++..++  +++.|+.|++||+++++.+..+.        .|    ...+.++. |+|+   ++ ++
T Consensus       199 ~~~~~~v~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~l  259 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANGSRVA--WVSHDSTVCLADADKKMAVATLA--------SE----TLPLLAVT-FITE---SS-LV  259 (372)
T ss_dssp             CCCSSCEEEEEECSSSSEEE--EEETTTEEEEEEGGGTTEEEEEE--------CS----SCCEEEEE-EEET---TE-EE
T ss_pred             CCCCCeEEEEEECCCCCEEE--EEeCCCEEEEEECCCCceeEEEc--------cC----CCCeEEEE-EecC---CC-EE
Confidence            45544    89999997555  56679999999999999988887        55    33567776 9997   44 67


Q ss_pred             EeecCCCcEEEEEccC--CC-------------------------------Cce------eec-cccccceeEEEee-cC
Q 022870          225 LAGYEDGSILVWDIRN--PG-------------------------------IPL------TAM-KVHLEPVLCLSID-ES  263 (291)
Q Consensus       225 ~~g~~dg~i~vwd~~~--~~-------------------------------~~~------~~~-~~h~~~v~~~~~~-~~  263 (291)
                      ++| .|+.|++||+++  +.                               ...      ..+ .+|...|++++|. ++
T Consensus       260 ~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  338 (372)
T 1k8k_C          260 AAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGG  338 (372)
T ss_dssp             EEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEEST
T ss_pred             EEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCC
Confidence            777 899999999986  10                               000      233 4899999999975 66


Q ss_pred             C---CeeEEecCCCeEEEEEcCCCce
Q 022870          264 C---NGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       264 ~---~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      +   .+|++|+.||.|++|++++++.
T Consensus       339 g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          339 KAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             TTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             CcceeeEEEecCCCceEEEEecChhH
Confidence            6   8999999999999999987543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6e-33  Score=222.73  Aligned_cols=257  Identities=11%  Similarity=0.107  Sum_probs=187.4

Q ss_pred             EecCCccceeEEEEcCC----CCEEEEecCCCeEEEEeCCCCeEEEEEeeec---CCcceEEEEEeecCC----CCeEEE
Q 022870           13 VLRGHRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHS---AAHGIVSVATGPSIG----LNKVIS   81 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~----~~~l~s   81 (291)
                      ...+|.++|++++|+|+    ...+++++.++.|++||+.+++.+..+..+.   +...|.+++|+|  +    +.+|++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~   90 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY--DSNTSHPLLAV   90 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE--CTTTCCEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc--CCCCCCCEEEE
Confidence            44589999999999984    4466667777799999999888777776554   225599999999  6    568999


Q ss_pred             EeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcccccc--CCCCCC----cc
Q 022870           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD--SLCDSK----DD  155 (291)
Q Consensus        82 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~  155 (291)
                      |+.||.|++||+.+++...  .+..+........+.+............+...+|++.........  +..|..    ++
T Consensus        91 ~~~dg~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  168 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIK--HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD  168 (366)
T ss_dssp             EETTCEEEEECTTTCCEEE--EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred             ecCCCEEEEEEchhceEee--eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence            9999999999999876543  223334445555555422333444555677888998876644432  244544    89


Q ss_pred             cCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccc--------------------cCCCCCCCCCcceeeeeEEEecC
Q 022870          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS--------------------CGGSPNFSSKGRGMCMAVQAYLP  215 (291)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~p  215 (291)
                      |+|++..++  +++.|+.|++||+++++....+....                    .....+|    ...+.++. |++
T Consensus       169 ~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~-~~~  241 (366)
T 3k26_A          169 YDLLGEKIM--SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH----RNYVDCVR-WLG  241 (366)
T ss_dssp             ECTTSSEEE--EEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC----SSCCCEEE-EET
T ss_pred             ECCCCCEEE--EecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC----cceEEEEE-EcC
Confidence            999987655  56669999999999876554332100                    0000013    44566776 873


Q ss_pred             CCCCCceEEEeecCCCcEEEEEccCCCC-------------ceeeccccccceeEEEeecC--CCeeEEecCCCeEEEEE
Q 022870          216 SKSQGFVNVLAGYEDGSILVWDIRNPGI-------------PLTAMKVHLEPVLCLSIDES--CNGGISGGADQKIVLYN  280 (291)
Q Consensus       216 ~~~~g~~~l~~g~~dg~i~vwd~~~~~~-------------~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~i~vw~  280 (291)
                      +      +|++++.||.|++||+++...             .+..+..|...|++++|+|+  +++|++++.||.|++||
T Consensus       242 ~------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd  315 (366)
T 3k26_A          242 D------LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD  315 (366)
T ss_dssp             T------EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred             C------EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence            3      899999999999999987322             26677889999999999999  99999999999999999


Q ss_pred             cCCCce
Q 022870          281 LDHSTV  286 (291)
Q Consensus       281 ~~~~~~  286 (291)
                      +++++.
T Consensus       316 ~~~~~~  321 (366)
T 3k26_A          316 LEVEDP  321 (366)
T ss_dssp             CCSSSG
T ss_pred             CCCCCC
Confidence            998764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.1e-32  Score=219.56  Aligned_cols=241  Identities=14%  Similarity=0.157  Sum_probs=176.3

Q ss_pred             CccceeEEEEcCC----CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        17 h~~~v~~l~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      |...|++++|+|+    +.+|++|+.||.|++||+.+++.+..+..|...  |.+++|+|. ++.+|++++.||.|++||
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~--i~~~~~~~~-~~~~l~s~~~dg~i~iwd  144 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA--INELKFHPR-DPNLLLSVSKDHALRLWN  144 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC--EEEEEECSS-CTTEEEEEETTSCEEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc--EEEEEECCC-CCCEEEEEeCCCeEEEEE
Confidence            6678999999998    679999999999999999999999999888855  999999984 458999999999999999


Q ss_pred             CCCCCCCCCCcc---ccccceEEEEEeecccCccceeccCCCCceeeecccCccccc-----------------------
Q 022870           93 IENGGLSSNPSL---TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-----------------------  146 (291)
Q Consensus        93 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  146 (291)
                      +++++...  .+   ..+........+.+... ........+...+|++........                       
T Consensus       145 ~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (366)
T 3k26_A          145 IQTDTLVA--IFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF  221 (366)
T ss_dssp             TTTTEEEE--EECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred             eecCeEEE--EecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence            99876533  11   12333444444444332 223334456778888775543211                       


Q ss_pred             ----cCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcce--------------eeEecccccCCCCCCCCCcc
Q 022870          147 ----DSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--------------CTRLHQNSCGGSPNFSSKGR  204 (291)
Q Consensus       147 ----~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~  204 (291)
                          ....|..    ++|+  ++ +++ +++.|+.|++||+++.+.              +..+.        +|.    
T Consensus       222 ~~~~~~~~~~~~v~~~~~~--~~-~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----  285 (366)
T 3k26_A          222 PDFSTRDIHRNYVDCVRWL--GD-LIL-SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD--------YSQ----  285 (366)
T ss_dssp             CSEEECSSCSSCCCEEEEE--TT-EEE-EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE--------CSS----
T ss_pred             CccccccCCcceEEEEEEc--CC-EEE-EEecCCEEEEEeCCCccccccccccCCcchheecccc--------ccC----
Confidence                1111333    6666  44 444 566799999999987754              34444        443    


Q ss_pred             eeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce----eecccc--ccceeEEEeecCCCeeEEecCCCeEEE
Q 022870          205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL----TAMKVH--LEPVLCLSIDESCNGGISGGADQKIVL  278 (291)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~----~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~v  278 (291)
                      ..+.++. |+|+. +++ +|++|+.||.|++||+++ +++.    ..+.+|  ...|++++|+|++++|++++.||.|++
T Consensus       286 ~~v~~~~-~s~~~-~~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  361 (366)
T 3k26_A          286 CDIWYMR-FSMDF-WQK-MLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR  361 (366)
T ss_dssp             CCSSCCC-CEECT-TSS-EEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CcEEEEE-EcCCC-CCc-EEEEEecCCcEEEEECCC-CCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence            3455565 88872 133 999999999999999997 5543    367777  789999999999999999999999999


Q ss_pred             EEcCC
Q 022870          279 YNLDH  283 (291)
Q Consensus       279 w~~~~  283 (291)
                      ||+.+
T Consensus       362 wd~~~  366 (366)
T 3k26_A          362 WDRLR  366 (366)
T ss_dssp             EEC--
T ss_pred             EEecC
Confidence            99864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.4e-32  Score=218.85  Aligned_cols=256  Identities=9%  Similarity=0.049  Sum_probs=179.2

Q ss_pred             CceEEe--cCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeec-CCcceEEEEEeecCCCCeEEEEeC
Q 022870            9 DPVAVL--RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         9 ~~~~~l--~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      +....+  .+|...|++++|+| ++.+|++++.|+.|++||+.+ +.+..+..+. ....|.+++|+|  ++.+|++++.
T Consensus       107 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~  183 (383)
T 3ei3_B          107 NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV--SRQMLATGDS  183 (383)
T ss_dssp             TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET--TTTEEEEEET
T ss_pred             ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC--CCCEEEEECC
Confidence            334444  47999999999999 788999999999999999985 5555554443 224599999999  9999999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc---ccccCCCCCC----cccC
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET---VDTDSLCDSK----DDVP  157 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~  157 (291)
                      |+.|++||++. +...  .+..+........+.+............+...+|++.....   ....+ +|..    ++|+
T Consensus       184 d~~i~i~d~~~-~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s  259 (383)
T 3ei3_B          184 TGRLLLLGLDG-HEIF--KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN  259 (383)
T ss_dssp             TSEEEEEETTS-CEEE--EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred             CCCEEEEECCC-CEEE--EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence            99999999953 2221  22223344455555554433444455566788888876321   11112 3444    8999


Q ss_pred             C-CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCc------ceeeeeEEEecCCCCCCceEEEeecCC
Q 022870          158 A-EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG------RGMCMAVQAYLPSKSQGFVNVLAGYED  230 (291)
Q Consensus       158 ~-~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (291)
                      | ++..++  +++.|+.|++||+++++....+...... ...|....      .+....+. |+|+   ++ +  +|+.|
T Consensus       260 ~~~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~-~s~d---g~-~--s~s~d  329 (383)
T 3ei3_B          260 PTDSTKLL--TTDQRNEIRVYSSYDWSKPDQIIIHPHR-QFQHLTPIKATWHPMYDLIVAG-RYPD---DQ-L--LLNDK  329 (383)
T ss_dssp             TTTSCEEE--EEESSSEEEEEETTBTTSCSEEEECCBC-CCTTSCCCCCEECSSSSEEEEE-CBCC---TT-T--CTTCC
T ss_pred             CCCCCEEE--EEcCCCcEEEEECCCCcccccccccccc-ccccccceEEeccCCCCceEEE-ecCC---cc-c--ccCCC
Confidence            9 886554  5666999999999998877666521000 00111111      12233344 6766   43 3  88899


Q ss_pred             CcEEEEEccCCCCceeeccc--cccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          231 GSILVWDIRNPGIPLTAMKV--HLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      |.|++||+++ ++++..+.+  |...+..++|+|++++|++++ ||.|++||+++
T Consensus       330 ~~i~iwd~~~-~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          330 RTIDIYDANS-GGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CCEEEEETTT-CCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CeEEEEecCC-CceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            9999999998 888888887  457788889999999999997 99999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.8e-32  Score=219.22  Aligned_cols=251  Identities=14%  Similarity=0.120  Sum_probs=187.5

Q ss_pred             CCCceEEec--CCccceeE--EEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEee-ecCCcceEEEEEeecCCCCeEEE
Q 022870            7 PPDPVAVLR--GHRASVTD--VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVIS   81 (291)
Q Consensus         7 ~~~~~~~l~--~h~~~v~~--l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s   81 (291)
                      |..+...+.  +|...+.+  ++|++  ..+++++.||.|++||+.+++....+.. |.  ..|.+++|+|  ++.+|++
T Consensus        78 ~~~p~~~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~--~~v~~v~~s~--~~~~l~~  151 (401)
T 4aez_A           78 NTTPERVLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDES--TYVASVKWSH--DGSFLSV  151 (401)
T ss_dssp             CCSCSEEEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTT--CCEEEEEECT--TSSEEEE
T ss_pred             CCCcceeeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCC--CCEEEEEECC--CCCEEEE
Confidence            434444444  77766544  55554  5688889999999999999998887766 44  5599999999  9999999


Q ss_pred             EeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccC
Q 022870           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (291)
Q Consensus        82 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (291)
                      |+.||.|++||+.+++...  .+..+........+  . ..........+...+|+++........+.+|..    ++|+
T Consensus       152 ~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  226 (401)
T 4aez_A          152 GLGNGLVDIYDVESQTKLR--TMAGHQARVGCLSW--N-RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR  226 (401)
T ss_dssp             EETTSCEEEEETTTCCEEE--EECCCSSCEEEEEE--E-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             ECCCCeEEEEECcCCeEEE--EecCCCCceEEEEE--C-CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence            9999999999999876543  22222333333333  2 223344455667788888765555555566655    8999


Q ss_pred             CCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec--CCCcEEE
Q 022870          158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILV  235 (291)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~--~dg~i~v  235 (291)
                      |++..++  +|+.|+.|++||+++++....+.        .|    ...+.++. |+|++   ..++++|+  .|+.|++
T Consensus       227 ~~~~~l~--s~~~d~~v~iwd~~~~~~~~~~~--------~~----~~~v~~~~-~~p~~---~~ll~~~~gs~d~~i~i  288 (401)
T 4aez_A          227 SDGLQLA--SGGNDNVVQIWDARSSIPKFTKT--------NH----NAAVKAVA-WCPWQ---SNLLATGGGTMDKQIHF  288 (401)
T ss_dssp             TTSSEEE--EEETTSCEEEEETTCSSEEEEEC--------CC----SSCCCEEE-ECTTS---TTEEEEECCTTTCEEEE
T ss_pred             CCCCEEE--EEeCCCeEEEccCCCCCccEEec--------CC----cceEEEEE-ECCCC---CCEEEEecCCCCCEEEE
Confidence            9887554  56679999999999998888887        45    34566776 99973   22777765  8999999


Q ss_pred             EEccCCCCceeeccccccceeEEEeecCCCeeEE--ecCCCeEEEEEcCCCceee
Q 022870          236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS--GGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       236 wd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--~s~dg~i~vw~~~~~~~~~  288 (291)
                      ||+++ ++++..+. |...|.+++|+|++++|++  |+.||.|++||+++++...
T Consensus       289 ~d~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~  341 (401)
T 4aez_A          289 WNAAT-GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK  341 (401)
T ss_dssp             EETTT-CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE
T ss_pred             EECCC-CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee
Confidence            99998 78887776 5678999999999999998  5589999999999876554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.7e-32  Score=246.78  Aligned_cols=259  Identities=12%  Similarity=0.197  Sum_probs=200.3

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      ....+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...  |.+++|+|  ++++|++++.||+|+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~--v~~~~~s~--~~~~l~s~~~d~~v~  682 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDE--VLCCAFSS--DDSYIATCSADKKVK  682 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECT--TSSEEEEEETTSEEE
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCC--EEEEEEec--CCCEEEEEeCCCeEE
Confidence            45578899999999999999999999999999999999999999999988855  99999999  999999999999999


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccCcc-ceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (291)
                      +||+.+++...  .+..+........+.+..... .......+...+|++....... .+.+|..    ++|+|+++.++
T Consensus       683 vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~sp~~~~l~  759 (1249)
T 3sfz_A          683 IWDSATGKLVH--TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN-TMFGHTNSVNHCRFSPDDELLA  759 (1249)
T ss_dssp             EEETTTCCEEE--EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE-EECCCSSCEEEEEECSSTTEEE
T ss_pred             EEECCCCceEE--EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh-eecCCCCCEEEEEEecCCCEEE
Confidence            99999886544  233344445555555433322 3344455678888887766443 3445555    89999997555


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCC--------------CCC-----------------------------CC
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS--------------PNF-----------------------------SS  201 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~--------------~~~-----------------------------~~  201 (291)
                        +++.||.|++||+++++....+........              ...                             ..
T Consensus       760 --s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~  837 (1249)
T 3sfz_A          760 --SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT  837 (1249)
T ss_dssp             --EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             --EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence              566799999999998876655432110000              000                             00


Q ss_pred             CcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      .....+.++. |+|+   +. ++++++.||.|++||+.+ +..+..+.+|...|++++|+|++.+|++++.||.|++|++
T Consensus       838 ~~~~~v~~~~-~sp~---~~-~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          838 GHHSTIQYCD-FSPY---DH-LAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             SSSSCCCEEE-ECSS---TT-EEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred             CCCCceEEEE-EcCC---CC-EEEEEeCCCeEEEEEcCC-CceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            1233456666 9987   44 899999999999999998 8889999999999999999999999999999999999997


Q ss_pred             CC
Q 022870          282 DH  283 (291)
Q Consensus       282 ~~  283 (291)
                      .+
T Consensus       912 ~~  913 (1249)
T 3sfz_A          912 KK  913 (1249)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=219.58  Aligned_cols=249  Identities=12%  Similarity=0.101  Sum_probs=193.6

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcc-------------eEEEEEeec
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG-------------IVSVATGPS   73 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~   73 (291)
                      ..+.+..+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+..+.....             +.++.|+| 
T Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  216 (425)
T 1r5m_A          138 TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-  216 (425)
T ss_dssp             TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-
T ss_pred             CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-
Confidence            3467788999999999999999999999999999999999999999888876652111             88999999 


Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC
Q 022870           74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK  153 (291)
Q Consensus        74 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (291)
                       + ..+++++.||.|++||+++++...  .+..+........+.+... ........+...+|++........ +..|..
T Consensus       217 -~-~~~~~~~~~g~i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~  290 (425)
T 1r5m_A          217 -D-DKFVIPGPKGAIFVYQITEKTPTG--KLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNSQNC-FYGHSQ  290 (425)
T ss_dssp             -T-TEEEEECGGGCEEEEETTCSSCSE--EECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSBSCSEE-ECCCSS
T ss_pred             -C-CEEEEEcCCCeEEEEEcCCCceee--eeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCccceE-ecCCCc
Confidence             6 679999999999999999876543  2223334444455554432 233344456677888776554333 233443


Q ss_pred             ----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC
Q 022870          154 ----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (291)
Q Consensus       154 ----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (291)
                          ++|+|++  .++ +++.|+.|++||+++++.+..+.        .|    ...+.++. |+|+   ++ +|++++.
T Consensus       291 ~i~~~~~~~~~--~l~-~~~~d~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~s~~---~~-~l~~~~~  350 (425)
T 1r5m_A          291 SIVSASWVGDD--KVI-SCSMDGSVRLWSLKQNTLLALSI--------VD----GVPIFAGR-ISQD---GQ-KYAVAFM  350 (425)
T ss_dssp             CEEEEEEETTT--EEE-EEETTSEEEEEETTTTEEEEEEE--------CT----TCCEEEEE-ECTT---SS-EEEEEET
T ss_pred             cEEEEEECCCC--EEE-EEeCCCcEEEEECCCCcEeEecc--------cC----CccEEEEE-EcCC---CC-EEEEEEC
Confidence                8999998  344 56669999999999999888887        44    34567776 9998   44 8999999


Q ss_pred             CCcEEEEEccCCCC--------------------ceeecccccc--ceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          230 DGSILVWDIRNPGI--------------------PLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       230 dg~i~vwd~~~~~~--------------------~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      ||.|++||+++ ..                    ++..+.+|..  .|++++|+|++++|++++.||.|++|+++.
T Consensus       351 dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          351 DGQVNVYDLKK-LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             TSCEEEEECHH-HHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred             CCeEEEEECCC-CccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence            99999999987 55                    7888999976  999999999999999999999999999863

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.1e-32  Score=222.82  Aligned_cols=214  Identities=14%  Similarity=0.180  Sum_probs=164.2

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      .+..| ..+....|++++++|++|+.||.|++||+.+++....+..|...  |.+++|+|  ++++|++++.|+.|++||
T Consensus        93 ~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~s~s~d~~i~iwd  167 (420)
T 3vl1_A           93 MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSE--ITKLKFFP--SGEALISSSQDMQLKIWS  167 (420)
T ss_dssp             TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSC--EEEEEECT--TSSEEEEEETTSEEEEEE
T ss_pred             EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCc--cEEEEECC--CCCEEEEEeCCCeEEEEe
Confidence            34445 44555678999999999999999999999999988887888855  99999999  999999999999999999


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (291)
                      +++++...  .+..+......                                        ++|+|++..++  +++.|+
T Consensus       168 ~~~~~~~~--~~~~h~~~v~~----------------------------------------~~~~~~~~~l~--s~~~d~  203 (420)
T 3vl1_A          168 VKDGSNPR--TLIGHRATVTD----------------------------------------IAIIDRGRNVL--SASLDG  203 (420)
T ss_dssp             TTTCCCCE--EEECCSSCEEE----------------------------------------EEEETTTTEEE--EEETTS
T ss_pred             CCCCcCce--EEcCCCCcEEE----------------------------------------EEEcCCCCEEE--EEcCCC
Confidence            99876533  11111111111                                        56889987655  666799


Q ss_pred             eEEEEeCCCcceeeEecccccCCCCCCCCCc-----------------ceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKG-----------------RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (291)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (291)
                      .|++||+++++.+..+....     .+....                 ...+.++. |+|+   ++ +|++|+.||.|++
T Consensus       204 ~v~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~---~~-~l~~~~~dg~i~i  273 (420)
T 3vl1_A          204 TIRLWECGTGTTIHTFNRKE-----NPHDGVNSIALFVGTDRQLHEISTSKKNNLE-FGTY---GK-YVIAGHVSGVITV  273 (420)
T ss_dssp             CEEEEETTTTEEEEEECBTT-----BTTCCEEEEEEEECCCSSCGGGCCCCCCTTC-SSCT---TE-EEEEEETTSCEEE
T ss_pred             cEEEeECCCCceeEEeecCC-----CCCCCccEEEEecCCcceeeecccCcccceE-EcCC---CC-EEEEEcCCCeEEE
Confidence            99999999999888886311     111110                 12233344 6776   55 8999999999999


Q ss_pred             EEccCCCCceeec-cccccceeEEEeecCCC-eeEEecCCCeEEEEEcCCCce
Q 022870          236 WDIRNPGIPLTAM-KVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       236 wd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      ||+++ ++.+..+ ..|...|++++|+|++. +|++|+.||.|++||+++++.
T Consensus       274 ~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          274 HNVFS-KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             EETTT-CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             EECCC-CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence            99998 5555444 56889999999999999 999999999999999998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-31  Score=210.18  Aligned_cols=245  Identities=16%  Similarity=0.233  Sum_probs=185.8

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC---eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      .+....+..|...|.+++|+|++.+|++|+.||.|++|++...   +.+..+..|...  |.++.|.+    +++++++.
T Consensus        49 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~----~~l~~~~~  122 (313)
T 3odt_A           49 QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN--VCSLSFQD----GVVISGSW  122 (313)
T ss_dssp             SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC--EEEEEEET----TEEEEEET
T ss_pred             CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC--EEEEEecC----CEEEEEeC
Confidence            3456778889999999999999999999999999999998754   556777778755  99999944    79999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCC-CCC----cccCCC
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-DSK----DDVPAE  159 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~  159 (291)
                      ||.|++||  ..+...  ....+........+..............+...+|+...   ....+.. +..    ++|+|+
T Consensus       123 d~~i~~~d--~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~~~~  195 (313)
T 3odt_A          123 DKTAKVWK--EGSLVY--NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK---VIKTFSGIHNDVVRHLAVVDD  195 (313)
T ss_dssp             TSEEEEEE--TTEEEE--EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE---EEEEECSSCSSCEEEEEEEET
T ss_pred             CCCEEEEc--CCcEEE--ecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc---eEEEEeccCcccEEEEEEcCC
Confidence            99999999  222211  22233334444444442333344445556667776322   2222222 333    889999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      +. ++  +++.|+.|++||+++++.+..+.        +|    ...+.++. |+|+   +  .|++++.||.|++||++
T Consensus       196 ~~-~~--~~~~dg~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~--~l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          196 GH-FI--SCSNDGLIKLVDMHTGDVLRTYE--------GH----ESFVYCIK-LLPN---G--DIVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             TE-EE--EEETTSEEEEEETTTCCEEEEEE--------CC----SSCEEEEE-ECTT---S--CEEEEETTSEEEEECTT
T ss_pred             Ce-EE--EccCCCeEEEEECCchhhhhhhh--------cC----CceEEEEE-EecC---C--CEEEEecCCEEEEEECC
Confidence            86 33  56679999999999999998887        55    34677787 9998   4  48899999999999999


Q ss_pred             CCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      + ++++..+..|...|.+++|+|+++ +++++.||.|++||+++++...
T Consensus       255 ~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          255 N-GSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             T-CCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             C-CceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence            8 889999999999999999999998 6678999999999999887654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.3e-32  Score=210.85  Aligned_cols=208  Identities=9%  Similarity=0.120  Sum_probs=143.7

Q ss_pred             ccceeEEEEcCC----CCEEEEec--------------------CCCeEEEEeC-CCCeEEEEEeeecCCcceEEEEEee
Q 022870           18 RASVTDVCFHQT----KPILFAGT--------------------TGGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGP   72 (291)
Q Consensus        18 ~~~v~~l~~~~~----~~~l~s~~--------------------~dg~v~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~   72 (291)
                      ...|++++|+|+    ++++++++                    .|+.|++|++ .+++.+..+..|...  +..++|+|
T Consensus       111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~--v~~l~fs~  188 (356)
T 2w18_A          111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE--ETILTFAE  188 (356)
T ss_dssp             EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS--SCEEEEEE
T ss_pred             ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc--eeeEEeec
Confidence            346777788888    77777655                    3889999998 458888888888866  77777777


Q ss_pred             -cCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEE-EEeecccCccceeccCCCCceeeecccCccccccCCC
Q 022870           73 -SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF-CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC  150 (291)
Q Consensus        73 -~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (291)
                       ..++.+|++++.|++|+|||++++++..    ++..+.... ....                                 
T Consensus       189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~----tL~g~~~~v~~v~~---------------------------------  231 (356)
T 2w18_A          189 VQGMQEALLGTTIMNNIVIWNLKTGQLLK----KMHIDDSYQASVCH---------------------------------  231 (356)
T ss_dssp             EETSTTEEEEEETTSEEEEEETTTCCEEE----EEECCC---CCCEE---------------------------------
T ss_pred             cCCCCceEEEecCCCcEEEEECCCCcEEE----EEcCCCcceeeeEE---------------------------------
Confidence             2356899999999999999999987644    332211100 0000                                 


Q ss_pred             CCCcccCCCCCcEE----------EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCC
Q 022870          151 DSKDDVPAEGPKYM----------AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (291)
Q Consensus       151 ~~~~~~~~~~~~~~----------~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  220 (291)
                         ++|+|+|..++          +++|+.|++|++||..+++.+..+....   +.+|...    ..+.. ++     +
T Consensus       232 ---vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~---p~Gh~~~----~lsg~-~s-----g  295 (356)
T 2w18_A          232 ---KAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL---PPGQAGR----FLEGD-VK-----D  295 (356)
T ss_dssp             ---EEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC---CTTCCCC----EEEEE-EE-----T
T ss_pred             ---EEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec---cCCCcce----eEccc-cC-----C
Confidence               34666665442          2478899999999999998876553100   0144332    22332 33     3


Q ss_pred             ceEEEeecCCCcEEEEEccCCCCceeecccccccee-EEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL-CLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      . ++++|+.|++|+|||+++ ++++.++.+|...+. .++|+|+|++|++|+.|++|+|||+.
T Consensus       296 ~-~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          296 H-CAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             T-EEEEEETTSCEEEEETTT-CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             C-EEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            3 899999999999999999 899999999988665 58999999999999999999999963

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-32  Score=226.49  Aligned_cols=250  Identities=12%  Similarity=0.041  Sum_probs=176.6

Q ss_pred             EEecCCccceeEEEEcCC------CCEEEEecCCCeEEEEeCCCCeE-----------EEEEeeecCCcceEEEEEeecC
Q 022870           12 AVLRGHRASVTDVCFHQT------KPILFAGTTGGELRIWDTVQHRT-----------VSSSWVHSAAHGIVSVATGPSI   74 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~------~~~l~s~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~   74 (291)
                      .++.+|.+.|++++|+|+      +.+||+|+.||+|++||+.+++.           ...+.+|..  +|++++|++  
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~--~v~sv~~s~--  276 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS--LITTFDFLS--  276 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT--CEEEEEESS--
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC--CEEEEEecC--
Confidence            456778899999999996      57999999999999999976532           235667774  499999998  


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccC--ccceeccCCCCceeeecccCcccccc---CC
Q 022870           75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--PYANAKQANEPKDCYEREVGETVDTD---SL  149 (291)
Q Consensus        75 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  149 (291)
                      + ..|++|+.||+|++||++++.... ..+..+........+.....  .........+...+|+++........   ..
T Consensus       277 ~-~~lasgs~DgtV~lWD~~~~~~~~-~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~  354 (524)
T 2j04_B          277 P-TTVVCGFKNGFVAEFDLTDPEVPS-FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR  354 (524)
T ss_dssp             S-SEEEEEETTSEEEEEETTBCSSCS-EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred             C-CeEEEEeCCCEEEEEECCCCCCce-EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence            6 589999999999999999764321 01233333333331122222  23344556677888988765533211   11


Q ss_pred             C-C-CCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee
Q 022870          150 C-D-SKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (291)
Q Consensus       150 ~-~-~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g  227 (291)
                      . . ..++|+|++..++  +++.|++|++||++++.++..+.        +|    ...+.+++ |+|+   |+ +|++|
T Consensus       355 ~~~v~~v~fsp~~~~l~--s~~~d~tv~lwd~~~~~~~~~l~--------gH----~~~V~sva-~Sp~---g~-~l~Sg  415 (524)
T 2j04_B          355 GSNLVPVVYCPQIYSYI--YSDGASSLRAVPSRAAFAVHPLV--------SR----ETTITAIG-VSRL---HP-MVLAG  415 (524)
T ss_dssp             CCSCCCEEEETTTTEEE--EECSSSEEEEEETTCTTCCEEEE--------EC----SSCEEEEE-CCSS---CC-BCEEE
T ss_pred             cCcccceEeCCCcCeEE--EeCCCCcEEEEECcccccceeee--------cC----CCceEEEE-eCCC---CC-eEEEE
Confidence            1 1 1289999987644  56668999999999998888777        56    44678887 9998   44 89999


Q ss_pred             cCCCcEEEEEccCC-------------------------------------------CCceeeccccccceeEEEeecCC
Q 022870          228 YEDGSILVWDIRNP-------------------------------------------GIPLTAMKVHLEPVLCLSIDESC  264 (291)
Q Consensus       228 ~~dg~i~vwd~~~~-------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~  264 (291)
                      +.||.|++||+...                                           +..+..+.+|...|++++|+|++
T Consensus       416 s~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~  495 (524)
T 2j04_B          416 SADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS  495 (524)
T ss_dssp             ETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCST
T ss_pred             ECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCC
Confidence            99999999985310                                           01123355688899999999996


Q ss_pred             C---eeEEecCCCeEEEEEcCCCce
Q 022870          265 N---GGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       265 ~---~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      .   .+|+|+.||.|+||+++....
T Consensus       496 ~~~~~lAsg~~~g~vrlw~l~~~~~  520 (524)
T 2j04_B          496 AGGKCYAFSNSAGLLTLEYLSLEHH  520 (524)
T ss_dssp             TTTTEEEEECTTSEEEEEECSCC--
T ss_pred             CccHHHHhhccCceEEEEEcccccc
Confidence            4   899999999999999986543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-30  Score=215.09  Aligned_cols=246  Identities=18%  Similarity=0.349  Sum_probs=189.0

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      ..+++.++.+|.+.|++++|+  +.++++|+.||+|++||+.+++.+..+..|...  |.++.|++    +.+++|+.||
T Consensus       148 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~----~~l~s~s~dg  219 (445)
T 2ovr_B          148 TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTST--VRCMHLHE----KRVVSGSRDA  219 (445)
T ss_dssp             TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEET----TEEEEEETTS
T ss_pred             CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCc--EEEEEecC----CEEEEEeCCC
Confidence            456788999999999999997  569999999999999999999999999988855  99999976    7899999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEE
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYM  164 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  164 (291)
                      +|++||+++++...  .+..+........  .. ..........+...+|++....... .+.+|..  .++..++..++
T Consensus       220 ~i~~wd~~~~~~~~--~~~~~~~~v~~~~--~~-~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~l~  293 (445)
T 2ovr_B          220 TLRVWDIETGQCLH--VLMGHVAAVRCVQ--YD-GRRVVSGAYDFMVKVWDPETETCLH-TLQGHTNRVYSLQFDGIHVV  293 (445)
T ss_dssp             EEEEEESSSCCEEE--EEECCSSCEEEEE--EC-SSCEEEEETTSCEEEEEGGGTEEEE-EECCCSSCEEEEEECSSEEE
T ss_pred             EEEEEECCCCcEEE--EEcCCcccEEEEE--EC-CCEEEEEcCCCEEEEEECCCCcEeE-EecCCCCceEEEEECCCEEE
Confidence            99999999876533  2222223333332  22 2233444556677888877665433 3345544  33333665544


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                        +|+.|+.|++||+++++.+..+.        +|..    .+.++. +.+.      ++++|+.||.|++||+++ +++
T Consensus       294 --~~~~d~~i~i~d~~~~~~~~~~~--------~~~~----~v~~~~-~~~~------~l~~~~~dg~i~vwd~~~-~~~  351 (445)
T 2ovr_B          294 --SGSLDTSIRVWDVETGNCIHTLT--------GHQS----LTSGME-LKDN------ILVSGNADSTVKIWDIKT-GQC  351 (445)
T ss_dssp             --EEETTSCEEEEETTTCCEEEEEC--------CCCS----CEEEEE-EETT------EEEEEETTSCEEEEETTT-CCE
T ss_pred             --EEeCCCeEEEEECCCCCEEEEEc--------CCcc----cEEEEE-EeCC------EEEEEeCCCeEEEEECCC-CcE
Confidence              56679999999999999988887        5533    445554 5533      899999999999999998 888


Q ss_pred             eeeccc---cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          245 LTAMKV---HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       245 ~~~~~~---h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +..+.+   |...|++++|++  .+|++|+.||.|++||+++++.+..+
T Consensus       352 ~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          352 LQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             EEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEccCCCCCCCEEEEEECC--CEEEEEeCCCeEEEEECCCCceeeee
Confidence            888876   888999999975  59999999999999999999887664

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.3e-31  Score=227.64  Aligned_cols=254  Identities=12%  Similarity=0.072  Sum_probs=190.4

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC----eEEEEEeeecCCcc-eEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHG-IVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      .|.+.|++++|+|++++|++++ ++.|++||+.++    +....+..|.  .. |.+++|+|..++++|++++.||.|++
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~--~~~v~~~~~sp~~~~~~l~s~~~dg~v~v   92 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVKFSPIKGSQYLCSGDESGKVIV   92 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCC--CceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence            5899999999999999999998 789999999988    8888888886  77 99999998445689999999999999


Q ss_pred             EECCCC------CCCCCCccccccceEEEEEeecccCccceeccCCC-CceeeecccCccccccCCCCCC----cccCCC
Q 022870           91 WDIENG------GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE-PKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (291)
Q Consensus        91 wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  159 (291)
                      ||+.++      .......+..+........+++............. ...++..+. ......+.+|..    ++|+|+
T Consensus        93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-~~~~~~~~~~~~~v~~~~~~~~  171 (615)
T 1pgu_A           93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQS  171 (615)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSS
T ss_pred             EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-CCcceeeecCCccEEEEEECCC
Confidence            999754      11110011222334444444444332222222111 123333332 223344556655    899999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC-CCCCceEEEeecCCCcEEEEEc
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS-KSQGFVNVLAGYEDGSILVWDI  238 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~l~~g~~dg~i~vwd~  238 (291)
                      ++.+++ +++.|+.|++||+++++.+..+.        +|.. ....+.++. |+|+ +.    +|++++.||.|++||+
T Consensus       172 ~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~--------~~~~-~~~~v~~~~-~~~~~~~----~l~~~~~dg~i~vwd~  236 (615)
T 1pgu_A          172 RPMRSM-TVGDDGSVVFYQGPPFKFSASDR--------THHK-QGSFVRDVE-FSPDSGE----FVITVGSDRKISCFDG  236 (615)
T ss_dssp             SSCEEE-EEETTTEEEEEETTTBEEEEEEC--------SSSC-TTCCEEEEE-ECSTTCC----EEEEEETTCCEEEEET
T ss_pred             CCcEEE-EEeCCCcEEEEeCCCcceeeeec--------ccCC-CCceEEEEE-ECCCCCC----EEEEEeCCCeEEEEEC
Confidence            986666 56679999999999999988887        5533 111577787 9997 43    8999999999999999


Q ss_pred             cCCCCceeec-c---ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          239 RNPGIPLTAM-K---VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       239 ~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ++ ++.+..+ .   .|...|.+++|+ ++.+|++++.||.|++||+++++.+..+
T Consensus       237 ~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~  290 (615)
T 1pgu_A          237 KS-GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKW  290 (615)
T ss_dssp             TT-CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CC-CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            98 8888888 6   899999999999 9999999999999999999998877653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-32  Score=238.62  Aligned_cols=214  Identities=14%  Similarity=0.094  Sum_probs=164.8

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      ...+|.+.|++++|+|++.+||+|+.||+|+|||..+.+....+. |.  .+|.+++|+|  + .+|++++.|++|++||
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~--~~V~~l~fsp--g-~~L~S~s~D~~v~lWd   85 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DR--SAIKEMRFVK--G-IYLVVINAKDTVYVLS   85 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SC--CCEEEEEEET--T-TEEEEEETTCEEEEEE
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CC--CCEEEEEEcC--C-CEEEEEECcCeEEEEE
Confidence            345899999999999999999999999999999998877665543 44  5599999999  4 6999999999999999


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (291)
                      +++++...    .+.......+                                       ++|+|++..++  +|+.||
T Consensus        86 ~~~~~~~~----~~~~~~~V~~---------------------------------------v~~sp~g~~l~--sgs~dg  120 (902)
T 2oaj_A           86 LYSQKVLT----TVFVPGKITS---------------------------------------IDTDASLDWML--IGLQNG  120 (902)
T ss_dssp             TTTCSEEE----EEECSSCEEE---------------------------------------EECCTTCSEEE--EEETTS
T ss_pred             CCCCcEEE----EEcCCCCEEE---------------------------------------EEECCCCCEEE--EEcCCC
Confidence            99875432    1111110111                                       66999997665  677799


Q ss_pred             eEEEEeCCCcceeeEeccccc----CCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          173 EVEIWDLNTAERCTRLHQNSC----GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      .|++||+++++.. .+.....    ....+|    .+.+.+++ |+|++  +. .+++|+.||.| +||+++ ++++..+
T Consensus       121 ~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h----~~~V~sl~-~sp~~--~~-~l~~g~~dg~v-lWd~~~-~~~~~~~  189 (902)
T 2oaj_A          121 SMIVYDIDRDQLS-SFKLDNLQKSSFFPAAR----LSPIVSIQ-WNPRD--IG-TVLISYEYVTL-TYSLVE-NEIKQSF  189 (902)
T ss_dssp             CEEEEETTTTEEE-EEEECCHHHHHTCSSSC----CCCCCEEE-EETTE--EE-EEEEECSSCEE-EEETTT-TEEEEEE
T ss_pred             cEEEEECCCCccc-cceeccccccccccccC----CCCeEEEE-EccCC--CC-EEEEEeCCCcE-EEECCC-CceEEEE
Confidence            9999999988753 1110000    011144    44677887 99962  22 89999999999 999998 7777777


Q ss_pred             ccc------------------ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          249 KVH------------------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       249 ~~h------------------~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      ..|                  ...|++++|+|++.+|++++.||.|++||+++++.+.
T Consensus       190 ~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          190 IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             ecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            655                  5789999999999999999999999999999988764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.9e-32  Score=222.05  Aligned_cols=232  Identities=15%  Similarity=0.090  Sum_probs=150.6

Q ss_pred             eEEecCCccceeEEEEcC--------CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCC-CeEEE
Q 022870           11 VAVLRGHRASVTDVCFHQ--------TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVIS   81 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~--------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s   81 (291)
                      +..+.||.+.|++++|+|        ++++||+|+.|++|+|||+.++.++..+..|...  |.+++|+|  ++ .+|++
T Consensus       129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~--v~~v~~~p--~~~~~l~~  204 (393)
T 4gq1_A          129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP--GISVQFRP--SNPNQLIV  204 (393)
T ss_dssp             ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC--EEEEEEET--TEEEEEEE
T ss_pred             ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC--cEEEEECC--CCCceEEe
Confidence            456789999999999997        7889999999999999999988888888888754  99999999  65 47999


Q ss_pred             EeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccC
Q 022870           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (291)
Q Consensus        82 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (291)
                      ++.||+|++||+++++.............  ...+.....+..                   ......+|..    +.|+
T Consensus       205 ~~~d~~v~~wd~~t~~~~~~~~~~~~~~~--~~~~s~~~~~~~-------------------~~~~~~~~~~~v~~v~~~  263 (393)
T 4gq1_A          205 GERNGNIRIFDWTLNLSAEENSQTELVKN--PWLLTLNTLPLV-------------------NTCHSSGIASSLANVRWI  263 (393)
T ss_dssp             EETTSEEEEEETTCCC----------CSC--CCSEEEESGGGC-------------------------CCSSSCSEEEEE
T ss_pred             cCCCCEEEEEECCCCcccccccccCCccc--ceEEecccccce-------------------eeeecccccccceeeeee
Confidence            99999999999998765331111000000  000000000000                   0001112222    4554


Q ss_pred             -CCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCc--------------ceeeeeEEEecCCCCCCce
Q 022870          158 -AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG--------------RGMCMAVQAYLPSKSQGFV  222 (291)
Q Consensus       158 -~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~p~~~~g~~  222 (291)
                       |++..++  +++.|+.+++||+..++....+.        .|....              ........ |.|..  +..
T Consensus       264 ~~dg~~l~--s~s~d~~i~vwd~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~  330 (393)
T 4gq1_A          264 GSDGSGIL--AMCKSGAWLRWNLFANNDYNEIS--------DSTMKLGPKNLLPNVQGISLFPSLLGAC-PHPRY--MDY  330 (393)
T ss_dssp             TTTTCEEE--EECTTSEEEEEEC---------------------------CCSCSEEEECSSCCSSCCE-ECSSC--TTE
T ss_pred             cCCCCEEE--EEeCCCCEEEEECccCCCCceEe--------eecCccccEEEccccccccccCcceeEE-EccCC--CCE
Confidence             7776655  67789999999998877655544        111110              01112222 55542  333


Q ss_pred             EEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      ++++|+.||.|++||+.+ +++...+..|..+|.+++|+|+|++||+++.|| +.+|.+.
T Consensus       331 ~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          331 FATAHSQHGLIQLINTYE-KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEEEETTTTEEEEEETTC-TTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EEEEECCCCEEEEEECCC-CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            788999999999999998 777888888999999999999999999998776 6666553

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.6e-31  Score=219.70  Aligned_cols=245  Identities=15%  Similarity=0.298  Sum_probs=179.5

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      ..++...+.+|.+.|++++|  ++.+|++|+.||+|++||+.+++.+..+..|...  |.+++|++    +.+++|+.||
T Consensus       162 ~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~l~~~~----~~l~s~s~dg  233 (435)
T 1p22_A          162 TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA--VLHLRFNN----GMMVTCSKDR  233 (435)
T ss_dssp             SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC--EEEEECCT----TEEEEEETTS
T ss_pred             CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCc--EEEEEEcC----CEEEEeeCCC
Confidence            34678889999999999999  7789999999999999999999999999988855  99999976    6999999999


Q ss_pred             eEEEEECCCCCCCCC-CccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcE
Q 022870           87 TVKCWDIENGGLSSN-PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKY  163 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  163 (291)
                      .|++||++++..... .....+.......  .+. ..........+...+|++........ +.+|..  .++..++.. 
T Consensus       234 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~--~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-  308 (435)
T 1p22_A          234 SIAVWDMASPTDITLRRVLVGHRAAVNVV--DFD-DKYIVSASGDRTIKVWNTSTCEFVRT-LNGHKRGIACLQYRDRL-  308 (435)
T ss_dssp             CEEEEECSSSSCCEEEEEECCCSSCEEEE--EEE-TTEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEEETTE-
T ss_pred             cEEEEeCCCCCCceeeeEecCCCCcEEEE--EeC-CCEEEEEeCCCeEEEEECCcCcEEEE-EcCCCCcEEEEEeCCCE-
Confidence            999999988754310 0111222222222  221 22233444556677888876654333 334444  333334543 


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      ++ +|+.||.|++||+++++++..+.        +|.    ..+.++. |.+     . +|++|+.||.|++||+++ +.
T Consensus       309 l~-~g~~dg~i~iwd~~~~~~~~~~~--------~h~----~~v~~~~-~~~-----~-~l~sg~~dg~i~vwd~~~-~~  367 (435)
T 1p22_A          309 VV-SGSSDNTIRLWDIECGACLRVLE--------GHE----ELVRCIR-FDN-----K-RIVSGAYDGKIKVWDLVA-AL  367 (435)
T ss_dssp             EE-EEETTSCEEEEETTTCCEEEEEC--------CCS----SCEEEEE-CCS-----S-EEEEEETTSCEEEEEHHH-HT
T ss_pred             EE-EEeCCCeEEEEECCCCCEEEEEe--------CCc----CcEEEEE-ecC-----C-EEEEEeCCCcEEEEECCC-CC
Confidence            44 56679999999999999998887        663    3566676 743     3 899999999999999976 33


Q ss_pred             ---------ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          244 ---------PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       244 ---------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                               ++..+.+|.+.|++++|  ++.+|++++.||.|++||+.+....
T Consensus       368 ~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          368 DPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             STTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred             CccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence                     67888999999999999  5568999999999999999876544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.2e-31  Score=215.14  Aligned_cols=245  Identities=14%  Similarity=0.161  Sum_probs=176.8

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEE--eecCCCCeEEEEeCCCeEE
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT--GPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~s~~~dg~i~   89 (291)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+. +..|..  +|.+++|  +|  ++.+|++++.||.|+
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~--~v~~~~~~~~~--~~~~l~~~~~dg~i~  154 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDA--PVKTIHWIKAP--NYSCVMTGSWDKTLK  154 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSS--CEEEEEEEECS--SCEEEEEEETTSEEE
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccC--ceEEEEEEeCC--CCCEEEEccCCCcEE
Confidence            7888999999999999999999999999999999999988776 455764  4999999  66  888999999999999


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCC---CCC--cccCCCCCc--
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC---DSK--DDVPAEGPK--  162 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~--  162 (291)
                      +||+++++...    .+....... ..... .+............+|++............   +..  +++.++...  
T Consensus       155 vwd~~~~~~~~----~~~~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (368)
T 3mmy_A          155 FWDTRSSNPMM----VLQLPERCY-CADVI-YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKP  228 (368)
T ss_dssp             EECSSCSSCSE----EEECSSCEE-EEEEE-TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred             EEECCCCcEEE----EEecCCCce-EEEec-CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCC
Confidence            99999886543    222221111 11111 122333444556667777655432222221   111  334333322  


Q ss_pred             EEEEecCCcCeEEEEeCCCc---ceeeEecccccCCCCCCCCC--------cceeeeeEEEecCCCCCCceEEEeecCCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSK--------GRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (291)
                      ..+++++.|+.|++||++..   +....+.        +|...        ....+.++. |+|+   ++ +|++|+.||
T Consensus       229 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~-~sp~---~~-~l~s~~~dg  295 (368)
T 3mmy_A          229 TGFALGSIEGRVAIHYINPPNPAKDNFTFK--------CHRSNGTNTSAPQDIYAVNGIA-FHPV---HG-TLATVGSDG  295 (368)
T ss_dssp             EEEEEEETTSEEEEEESSCSCHHHHSEEEE--------CSEEC----CCCEEECCEEEEE-ECTT---TC-CEEEEETTS
T ss_pred             CeEEEecCCCcEEEEecCCCCccccceeee--------eeecccccccccccccceEEEE-EecC---CC-EEEEEccCC
Confidence            11236777999999999987   4455555        34221        111578887 9998   44 899999999


Q ss_pred             cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      .|++||+++ ++++..+.+|...|++++|+|++.+|++++.|+..+.|++
T Consensus       296 ~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          296 RFSFWDKDA-RTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             CEEEEETTT-TEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             eEEEEECCC-CcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence            999999998 8899999999999999999999999999999876555554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.5e-31  Score=215.64  Aligned_cols=238  Identities=17%  Similarity=0.285  Sum_probs=182.6

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      +....+|...|++++|  ++.+|++|+.||.|++||+.+++....+.+|...  |.+++|.    +++|++|+.||+|++
T Consensus       126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~~----~~~l~sg~~dg~i~v  197 (435)
T 1p22_A          126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS--VLCLQYD----ERVIITGSSDSTVRV  197 (435)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC--EEEEECC----SSEEEEEETTSCEEE
T ss_pred             EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCc--EEEEEEC----CCEEEEEcCCCeEEE
Confidence            3444567888999988  7889999999999999999999999999999855  9999983    489999999999999


Q ss_pred             EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcccc--ccCCCCCC--cccCCCCCcEEEE
Q 022870           91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD--TDSLCDSK--DDVPAEGPKYMAV  166 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~  166 (291)
                      ||+++++...  .+..+........  ... .........+...+|++.......  ..+.+|..  .++..++..++  
T Consensus       198 wd~~~~~~~~--~~~~h~~~v~~l~--~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~--  270 (435)
T 1p22_A          198 WDVNTGEMLN--TLIHHCEAVLHLR--FNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV--  270 (435)
T ss_dssp             EESSSCCEEE--EECCCCSCEEEEE--CCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE--
T ss_pred             EECCCCcEEE--EEcCCCCcEEEEE--EcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE--
Confidence            9999886543  2222222333322  222 233444556778888887665432  44556655  33333665444  


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +|+.||.|++||+++++.+..+.        +|..    .+.++. |++.      ++++|+.||.|++||+++ ++++.
T Consensus       271 s~~~dg~i~vwd~~~~~~~~~~~--------~~~~----~v~~~~-~~~~------~l~~g~~dg~i~iwd~~~-~~~~~  330 (435)
T 1p22_A          271 SASGDRTIKVWNTSTCEFVRTLN--------GHKR----GIACLQ-YRDR------LVVSGSSDNTIRLWDIEC-GACLR  330 (435)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEE--------CCSS----CEEEEE-EETT------EEEEEETTSCEEEEETTT-CCEEE
T ss_pred             EEeCCCeEEEEECCcCcEEEEEc--------CCCC----cEEEEE-eCCC------EEEEEeCCCeEEEEECCC-CCEEE
Confidence            56679999999999999998887        5643    456665 7533      899999999999999998 88999


Q ss_pred             eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      .+.+|...|.+++|  ++.+|++|+.||.|++||+++++
T Consensus       331 ~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          331 VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence            99999999999999  56699999999999999997655

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.6e-30  Score=211.46  Aligned_cols=256  Identities=17%  Similarity=0.205  Sum_probs=184.6

Q ss_pred             CCCCceEEecCCc----cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEE
Q 022870            6 PPPDPVAVLRGHR----ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS   81 (291)
Q Consensus         6 ~~~~~~~~l~~h~----~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s   81 (291)
                      .|..|.+.|.+..    --++.|+|++++ +||+|. |++|+|||..++++...+..+.+...|++++|+|  +|++|++
T Consensus        89 i~~~p~~~l~ap~~~~d~y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp--dg~~las  164 (420)
T 4gga_A           89 IPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAV  164 (420)
T ss_dssp             CCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEE
T ss_pred             cCCCCceEEECCCCcccccceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC--CCCEEEE
Confidence            3445566666432    236779999864 777765 8999999999999988887665546699999999  9999999


Q ss_pred             EeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccC
Q 022870           82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP  157 (291)
Q Consensus        82 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  157 (291)
                      |+.||+|++||+++++...    ....+......+.... ..............++..........+.+|..    +.++
T Consensus       165 gs~Dg~v~iWd~~~~~~~~----~~~~h~~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~  239 (420)
T 4gga_A          165 GTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA  239 (420)
T ss_dssp             EETTSCEEEEETTTTEEEE----EECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             EECCCeEEEEEcCCCcEEE----EEeCCCCceEEEeeCC-CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence            9999999999999886543    3333322222233222 12233334455566666665555555666665    8899


Q ss_pred             CCCCcEEEEecCCcCeEEEEeCCCccee----eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe--ecCCC
Q 022870          158 AEGPKYMAVAGEQLSEVEIWDLNTAERC----TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDG  231 (291)
Q Consensus       158 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~--g~~dg  231 (291)
                      |++..++  +++.|+.+++||..+++..    ....        .|    ...+.++. |+|.+.  . ++++  |+.|+
T Consensus       240 ~~g~~l~--s~~~D~~v~i~~~~~~~~~~~~~~~~~--------~~----~~~V~~~~-~~p~~~--~-~la~~~gs~D~  301 (420)
T 4gga_A          240 PDGRHLA--SGGNDNLVNVWPSAPGEGGWVPLQTFT--------QH----QGAVKAVA-WCPWQS--N-VLATGGGTSDR  301 (420)
T ss_dssp             TTSSEEE--EEETTSCEEEEESSCCSSCSCCSEEEC--------CC----SSCEEEEE-ECTTCT--T-EEEEEECTTTC
T ss_pred             CCCCeee--eeeccccceEEeeccccccceeeeeec--------cc----CCceeeee-eCCCcc--c-EEEEEeecCCC
Confidence            9997655  5667999999999877532    2222        33    45677776 999843  2 5544  56899


Q ss_pred             cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec--CCCeEEEEEcCCCceeeee
Q 022870          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~dg~i~vw~~~~~~~~~~~  290 (291)
                      .|++||+++ ++++..+..| ..+.++.|++++..+++++  .|+.|+|||+.+++.+.++
T Consensus       302 ~I~iwd~~t-~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l  360 (420)
T 4gga_A          302 HIRIWNVCS-GACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL  360 (420)
T ss_dssp             EEEEEETTT-TEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred             EEEEEeCCc-cccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE
Confidence            999999998 7887777754 5789999999999887754  7999999999999988764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.5e-31  Score=211.88  Aligned_cols=231  Identities=12%  Similarity=0.163  Sum_probs=171.9

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecc
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV  119 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (291)
                      ..+..|+..+..+..++.+|...  |++++|+|  ++++|++|+.||+|++||+.+++...  .+..+......+.+++.
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~--V~~~~~sp--~~~~l~s~s~D~~v~iWd~~~~~~~~--~~~~h~~~v~~~~~s~~  119 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGK--VYSLDWTP--EKNWIVSASQDGRLIVWNALTSQKTH--AIKLHCPWVMECAFAPN  119 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSC--EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEE--EEECCCTTCCCCEECTT
T ss_pred             ccccccccceeEEeecccccccE--EEEEEEcC--CCCEEEEEeCCCeEEEEECCCCccce--EEecCCCCEEEEEECCC
Confidence            44567888888899999999865  99999999  99999999999999999998876433  22223333333334433


Q ss_pred             cCccceeccCCCCceeeecccCc------cccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEec
Q 022870          120 KEPYANAKQANEPKDCYEREVGE------TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH  189 (291)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~  189 (291)
                      ... ...........+|++....      .....+.+|..    +.|.|++...++ +|+.|+.|++||+++++.+..+.
T Consensus       120 g~~-las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~-s~s~D~~i~~wd~~~~~~~~~~~  197 (380)
T 3iz6_a          120 GQS-VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI-TGSGDQTCVLWDVTTGQRISIFG  197 (380)
T ss_dssp             SSE-EEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEE-EECTTSCEEEECTTTCCEEEEEC
T ss_pred             CCE-EEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEE-EECCCCcEEEEEcCCCcEEEEee
Confidence            222 2233344566677765322      23334566665    788998766555 67779999999999999887774


Q ss_pred             ccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEE
Q 022870          190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS  269 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  269 (291)
                      .       .....+...+.++. |+|..  +. +|++|+.||.|++||++....++..+.+|.+.|++++|+|++.+|++
T Consensus       198 ~-------~~~~~h~~~v~~~~-~~~~~--~~-~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s  266 (380)
T 3iz6_a          198 S-------EFPSGHTADVLSLS-INSLN--AN-MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT  266 (380)
T ss_dssp             C-------CSSSSCCSCEEEEE-ECSSS--CC-EEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred             c-------ccCCCCccCeEEEE-eecCC--CC-EEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE
Confidence            2       11112345677776 87742  33 89999999999999998657888999999999999999999999999


Q ss_pred             ecCCCeEEEEEcCCCceeee
Q 022870          270 GGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       270 ~s~dg~i~vw~~~~~~~~~~  289 (291)
                      |+.||+|++||+++++.++.
T Consensus       267 ~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          267 GSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             ECSSSCEEEEETTTTEEEEE
T ss_pred             EcCCCeEEEEECCCCcEEEE
Confidence            99999999999999887654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-31  Score=216.71  Aligned_cols=247  Identities=14%  Similarity=0.049  Sum_probs=166.1

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe---EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      +++.++.+|...|++++|+|++++|++|+.|++|++||+.+++   ....+..|...  |.+++|+|  ++++|++++.|
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~~~~~d  121 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRA--ATFVRWSP--NEDKFAVGSGA  121 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSC--EEEEECCT--TSSCCEEEESS
T ss_pred             EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCc--eEEEEECC--CCCEEEEEecC
Confidence            4567888999999999999999999999999999999998876   56666777744  99999999  99999999999


Q ss_pred             CeEEEEECCCCCCCCC-Ccccc-ccceEEEEEeecccCccceeccCCCCceeeecccC-----------------ccccc
Q 022870           86 GTVKCWDIENGGLSSN-PSLTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVG-----------------ETVDT  146 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~  146 (291)
                      +.|++||+++++.... ..+.. +........+++... ........+...+|++...                 .....
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (377)
T 3dwl_C          122 RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA  200 (377)
T ss_dssp             SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE
T ss_pred             CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh
Confidence            9999999998753110 01122 333444444544332 2233344566777887421                 11222


Q ss_pred             cCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcce----eeEecccccCCCCCCCCCcceeeeeEEEecCCCC
Q 022870          147 DSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (291)
Q Consensus       147 ~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  218 (291)
                      .+ .|..    ++|+|+++.++  +++.|+.|++||+++++.    +..+.        +|    ...+.++. |+|+  
T Consensus       201 ~~-~~~~~v~~~~~sp~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~----~~~v~~~~-~s~~--  262 (377)
T 3dwl_C          201 EY-PSGGWVHAVGFSPSGNALA--YAGHDSSVTIAYPSAPEQPPRALITVK--------LS----QLPLRSLL-WANE--  262 (377)
T ss_dssp             CC-CCSSSEEEEEECTTSSCEE--EEETTTEEC-CEECSTTSCEEECCCEE--------CS----SSCEEEEE-EEET--
T ss_pred             cc-cCCceEEEEEECCCCCEEE--EEeCCCcEEEEECCCCCCcceeeEeec--------CC----CCceEEEE-EcCC--
Confidence            23 5554    89999998655  566799999999999887    55555        45    34577787 9998  


Q ss_pred             CCceEEEeecCCCcEEEEEccCCC-Cce----------------------------------e----------------e
Q 022870          219 QGFVNVLAGYEDGSILVWDIRNPG-IPL----------------------------------T----------------A  247 (291)
Q Consensus       219 ~g~~~l~~g~~dg~i~vwd~~~~~-~~~----------------------------------~----------------~  247 (291)
                       ++ +|++|+.++.+ +|+....+ +..                                  .                .
T Consensus       263 -~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  339 (377)
T 3dwl_C          263 -SA-IVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSL  339 (377)
T ss_dssp             -TE-EEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCC
T ss_pred             -CC-EEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence             54 88888766665 66654212 000                                  0                0


Q ss_pred             ccccccceeEEEeecC-CC---eeEEecCCCeEEEEEc
Q 022870          248 MKVHLEPVLCLSIDES-CN---GGISGGADQKIVLYNL  281 (291)
Q Consensus       248 ~~~h~~~v~~~~~~~~-~~---~l~s~s~dg~i~vw~~  281 (291)
                      ...|...|+++++.+. +.   .|+|+|.||.|++||+
T Consensus       340 ~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          340 PTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             CccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            1139999999997543 33   5999999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.7e-30  Score=227.87  Aligned_cols=254  Identities=17%  Similarity=0.209  Sum_probs=196.6

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      .++.+.++.+|.++|++++|+|++++|++|+.||.|++||+.+++.+..+..|...  |.+++|+|  ++.+|++++.||
T Consensus        44 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~--v~~~~~s~--~~~~l~~~~~dg  119 (814)
T 3mkq_A           44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY--IRSIAVHP--TKPYVLSGSDDL  119 (814)
T ss_dssp             TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECS--SSSEEEEEETTS
T ss_pred             CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC--EEEEEEeC--CCCEEEEEcCCC
Confidence            34677889999999999999999999999999999999999999999999888855  99999999  999999999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCC--CC
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA--EG  160 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~  160 (291)
                      .|++||++++.... .....+........+++............+...+|++............+..    ++|+|  ++
T Consensus       120 ~i~vw~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  198 (814)
T 3mkq_A          120 TVKLWNWENNWALE-QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK  198 (814)
T ss_dssp             EEEEEEGGGTSEEE-EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC
T ss_pred             EEEEEECCCCceEE-EEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC
Confidence            99999998763211 1222233444445554422223334445566778887665544333333312    88888  77


Q ss_pred             CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      ..++  +|+.||.|++||+++++.+..+.        +|    ...+.++. |+|++   . +|++|+.||.|++||+.+
T Consensus       199 ~~l~--~~~~dg~i~~~d~~~~~~~~~~~--------~~----~~~v~~~~-~~~~~---~-~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          199 PYMI--TASDDLTIKIWDYQTKSCVATLE--------GH----MSNVSFAV-FHPTL---P-IIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             CEEE--EECTTSEEEEEETTTTEEEEEEE--------CC----SSCEEEEE-ECSSS---S-EEEEEETTSCEEEEETTT
T ss_pred             CEEE--EEeCCCEEEEEECCCCcEEEEEc--------CC----CCCEEEEE-EcCCC---C-EEEEEeCCCeEEEEECCC
Confidence            6544  56779999999999999888887        55    34567776 99984   4 899999999999999998


Q ss_pred             CCCceeeccccccceeEEEeecCCCee-EEecCCCeEEEEEcCCCc
Q 022870          241 PGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHST  285 (291)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~vw~~~~~~  285 (291)
                       ++.+..+..|...+.+++|+|++..+ ++++.|+.+.+|++....
T Consensus       260 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          260 -YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             -CSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred             -CcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence             88999999999999999999998742 445557779999987643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.2e-30  Score=213.04  Aligned_cols=257  Identities=9%  Similarity=0.008  Sum_probs=177.3

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCC---CCeEEEEEeee--------c--CCcceEEEEEeecCCCC
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV---QHRTVSSSWVH--------S--AAHGIVSVATGPSIGLN   77 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~---~~~~~~~~~~~--------~--~~~~v~~~~~~~~~~~~   77 (291)
                      ...+ +|.++|++++|+|++.+|++|+.||+|++||++   +++....+..+        .  ....+.++.+....++.
T Consensus       105 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (437)
T 3gre_A          105 SLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS  183 (437)
T ss_dssp             SEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred             eeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence            3444 499999999999999999999999999999984   55554444332        1  22446677643222788


Q ss_pred             eEEEEeCCCeEEEEECCCCCCCCCCcccc--ccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--
Q 022870           78 KVISQGRDGTVKCWDIENGGLSSNPSLTI--KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--  153 (291)
Q Consensus        78 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  153 (291)
                      +|++++.||.|++||+++++...  .+..  +........+++.. .........+...+|+++...........|..  
T Consensus       184 ~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  260 (437)
T 3gre_A          184 LLVALTNLSRVIIFDIRTLERLQ--IIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPI  260 (437)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEE--EEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEE
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeE--EEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCce
Confidence            99999999999999999876543  2222  23444444444442 22334445567888998876655443323333  


Q ss_pred             --c----ccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCC------CC--------CCCCcceeeeeEEEe
Q 022870          154 --D----DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS------PN--------FSSKGRGMCMAVQAY  213 (291)
Q Consensus       154 --~----~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~------~~--------~~~~~~~~~~~~~~~  213 (291)
                        +    +|+|++..+ + +|+.|+.|++||+++++++..+........      .+        ........+.++. |
T Consensus       261 ~~~~~~~~~s~~~~~l-~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~-~  337 (437)
T 3gre_A          261 THVEVCQFYGKNSVIV-V-GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS-V  337 (437)
T ss_dssp             EEEEECTTTCTTEEEE-E-EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE-E
T ss_pred             EEEEeccccCCCccEE-E-EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE-E
Confidence              5    555666433 3 677899999999999998887762110000      00        0001344566776 8


Q ss_pred             cCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc-------------------------------------ccccee
Q 022870          214 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-------------------------------------HLEPVL  256 (291)
Q Consensus       214 ~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------------------------------------h~~~v~  256 (291)
                      + +   ++ +|++|+.||.|++||+++ ++....+.+                                     |...|+
T Consensus       338 ~-~---~~-~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~  411 (437)
T 3gre_A          338 S-N---DK-ILLTDEATSSIVMFSLNE-LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIIN  411 (437)
T ss_dssp             E-T---TE-EEEEEGGGTEEEEEETTC-GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEE
T ss_pred             C-C---ce-EEEecCCCCeEEEEECCC-cccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccccccee
Confidence            7 3   33 899999999999999998 666665554                                     889999


Q ss_pred             EEEeecC--CCeeEEecCCCeEEEEE
Q 022870          257 CLSIDES--CNGGISGGADQKIVLYN  280 (291)
Q Consensus       257 ~~~~~~~--~~~l~s~s~dg~i~vw~  280 (291)
                      +++|.++  +.+|++|+.||.|+||+
T Consensus       412 ~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          412 SISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             eEeeeccCCceEEEEEcCCceEEEeC
Confidence            9999877  88999999999999995

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.98  E-value=5.7e-30  Score=211.05  Aligned_cols=244  Identities=21%  Similarity=0.342  Sum_probs=185.6

Q ss_pred             CceEEecCCccce-eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            9 DPVAVLRGHRASV-TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         9 ~~~~~l~~h~~~v-~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      +....+.+|.+.| .++.  +++++|++|+.||+|++||+.+++.+..+.+|...  |.+++|++    +++++|+.||+
T Consensus       109 ~~~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~----~~l~s~~~dg~  180 (445)
T 2ovr_B          109 KSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG--VWSSQMRD----NIIISGSTDRT  180 (445)
T ss_dssp             CCCEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSC--EEEEEEET----TEEEEEETTSC
T ss_pred             ceeEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCC--EEEEEecC----CEEEEEeCCCe
Confidence            4567899999875 5544  46889999999999999999999999999999855  99999986    79999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEE
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA  165 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  165 (291)
                      |++||+.+++...  .+..+........+  . ..........+...+|++....... .+.+|..  .++..++..++ 
T Consensus       181 i~vwd~~~~~~~~--~~~~h~~~v~~~~~--~-~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~~~~~l~-  253 (445)
T 2ovr_B          181 LKVWNAETGECIH--TLYGHTSTVRCMHL--H-EKRVVSGSRDATLRVWDIETGQCLH-VLMGHVAAVRCVQYDGRRVV-  253 (445)
T ss_dssp             EEEEETTTTEEEE--EECCCSSCEEEEEE--E-TTEEEEEETTSEEEEEESSSCCEEE-EEECCSSCEEEEEECSSCEE-
T ss_pred             EEEEECCcCcEEE--EECCCCCcEEEEEe--c-CCEEEEEeCCCEEEEEECCCCcEEE-EEcCCcccEEEEEECCCEEE-
Confidence            9999999876533  22222233333322  2 2223344455677788887665433 2334444  23333665544 


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                       +|+.||.|++||+++++.+..+.        +|.    ..+.++. |.     +. ++++|+.||.|++||+++ ++++
T Consensus       254 -~~~~dg~i~iwd~~~~~~~~~~~--------~~~----~~v~~~~-~~-----~~-~l~~~~~d~~i~i~d~~~-~~~~  312 (445)
T 2ovr_B          254 -SGAYDFMVKVWDPETETCLHTLQ--------GHT----NRVYSLQ-FD-----GI-HVVSGSLDTSIRVWDVET-GNCI  312 (445)
T ss_dssp             -EEETTSCEEEEEGGGTEEEEEEC--------CCS----SCEEEEE-EC-----SS-EEEEEETTSCEEEEETTT-CCEE
T ss_pred             -EEcCCCEEEEEECCCCcEeEEec--------CCC----CceEEEE-EC-----CC-EEEEEeCCCeEEEEECCC-CCEE
Confidence             56679999999999999988887        553    3566676 73     33 899999999999999998 8899


Q ss_pred             eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ..+.+|...+.++.++++  +|++|+.||.|++||+++++.+..+
T Consensus       313 ~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~  355 (445)
T 2ovr_B          313 HTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTL  355 (445)
T ss_dssp             EEECCCCSCEEEEEEETT--EEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEcCCcccEEEEEEeCC--EEEEEeCCCeEEEEECCCCcEEEEE
Confidence            999999999999988654  9999999999999999998877654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.98  E-value=7.1e-30  Score=234.49  Aligned_cols=257  Identities=16%  Similarity=0.221  Sum_probs=183.6

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      ..+.+.++.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...  |.+++|+|..++.++++|+.|+
T Consensus       646 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~sg~~d~  723 (1249)
T 3sfz_A          646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ--VNCCHFTNKSNHLLLATGSNDF  723 (1249)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECSSSSCCEEEEEETTS
T ss_pred             CCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc--EEEEEEecCCCceEEEEEeCCC
Confidence            34678899999999999999999999999999999999999999999999998855  9999999943445889999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc-----------------------
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET-----------------------  143 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  143 (291)
                      .|++||+++++...  .+..+........+++.... .......+...+|++.....                       
T Consensus       724 ~v~vwd~~~~~~~~--~~~~h~~~v~~~~~sp~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (1249)
T 3sfz_A          724 FLKLWDLNQKECRN--TMFGHTNSVNHCRFSPDDEL-LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI  800 (1249)
T ss_dssp             CEEEEETTSSSEEE--EECCCSSCEEEEEECSSTTE-EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred             eEEEEECCCcchhh--eecCCCCCEEEEEEecCCCE-EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence            99999999886543  22223334444444443221 22222334455555443321                       


Q ss_pred             -------------------------------ccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEe
Q 022870          144 -------------------------------VDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (291)
Q Consensus       144 -------------------------------~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~  188 (291)
                                                     ......+|..    ++|+|++..++  +++.|+.|++||+.+++.+..+
T Consensus       801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~--~~~~dg~v~vwd~~~~~~~~~~  878 (1249)
T 3sfz_A          801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV--IALSQYCVELWNIDSRLKVADC  878 (1249)
T ss_dssp             BCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEE--EECSSSCEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEE--EEeCCCeEEEEEcCCCceeeec
Confidence                                           1111113333    77888886544  5666899999999998887777


Q ss_pred             cccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE-------------------------------
Q 022870          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD-------------------------------  237 (291)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd-------------------------------  237 (291)
                      .        +|.    ..+.++. |+|+   |. +|++++.||.|++||                               
T Consensus       879 ~--------~h~----~~v~~v~-~spd---g~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  941 (1249)
T 3sfz_A          879 R--------GHL----SWVHGVM-FSPD---GS-SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD  941 (1249)
T ss_dssp             C--------CCS----SCEEEEE-ECTT---SS-EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEE
T ss_pred             C--------CCc----cceEEEE-ECCC---CC-EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEec
Confidence            6        553    2344454 6655   22 455555555555555                               


Q ss_pred             ------------------------------------------------ccCCCCceeeccccccceeEEEeecCCCeeEE
Q 022870          238 ------------------------------------------------IRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS  269 (291)
Q Consensus       238 ------------------------------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  269 (291)
                                                                      +.+ ++....+.+|...|++++|+|++++|++
T Consensus       942 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1020 (1249)
T 3sfz_A          942 NIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHIQFTADGKTLIS 1020 (1249)
T ss_dssp             SSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECCCCSSCCCCEEECSSSSCEEE
T ss_pred             CCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-CceeeecccCCCceEEEEECCCCCEEEE
Confidence                                                            444 4556667789999999999999999999


Q ss_pred             ecCCCeEEEEEcCCCceee
Q 022870          270 GGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       270 ~s~dg~i~vw~~~~~~~~~  288 (291)
                      ++.||.|++||+.+++...
T Consensus      1021 ~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A         1021 SSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp             ECSSSBEEEEETTTTEEEC
T ss_pred             EcCCCEEEEEECCCCceEE
Confidence            9999999999999887653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.2e-30  Score=231.06  Aligned_cols=261  Identities=11%  Similarity=0.085  Sum_probs=174.6

Q ss_pred             EecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCCCeEEEEEeeec----------------CCcceEEEEEeecCC
Q 022870           13 VLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHS----------------AAHGIVSVATGPSIG   75 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~   75 (291)
                      .+++|.++|++++|+|+ +..|++|+.||.| +||+++++++..+..|.                +...|.+++|+|  +
T Consensus       146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--d  222 (902)
T 2oaj_A          146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--N  222 (902)
T ss_dssp             CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--T
T ss_pred             ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--C
Confidence            45789999999999995 5789999999999 99999999988887651                114599999999  9


Q ss_pred             CCeEEEEeCCCeEEEEECCCCCCCCC-Ccc--ccc-------------cceEEEEEeecccCcc----------------
Q 022870           76 LNKVISQGRDGTVKCWDIENGGLSSN-PSL--TIK-------------TNSYHFCKLSLVKEPY----------------  123 (291)
Q Consensus        76 ~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~--~~~-------------~~~~~~~~~~~~~~~~----------------  123 (291)
                      |.+|++|+.||+|++||+++++.... ...  ..+             ........+.....+.                
T Consensus       223 g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~  302 (902)
T 2oaj_A          223 SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDN  302 (902)
T ss_dssp             SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSC
T ss_pred             CCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCC
Confidence            99999999999999999987654210 000  000             0011111111100000                


Q ss_pred             ----------------------------------------------------------------ceeccCCCCceeeecc
Q 022870          124 ----------------------------------------------------------------ANAKQANEPKDCYERE  139 (291)
Q Consensus       124 ----------------------------------------------------------------~~~~~~~~~~~~~~~~  139 (291)
                                                                                      .......+....|++.
T Consensus       303 ~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~  382 (902)
T 2oaj_A          303 QSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP  382 (902)
T ss_dssp             CCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETT
T ss_pred             ceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECC
Confidence                                                                            0000011223444442


Q ss_pred             cCcccc----------------------------------------ccCCCCCC----cccCCCCCcEEEEecCCcCeEE
Q 022870          140 VGETVD----------------------------------------TDSLCDSK----DDVPAEGPKYMAVAGEQLSEVE  175 (291)
Q Consensus       140 ~~~~~~----------------------------------------~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~  175 (291)
                      ......                                        ..+.+|..    ++|+|+++.++  +|+.|++|+
T Consensus       383 ~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la--Sgs~DgtVr  460 (902)
T 2oaj_A          383 SGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI--TGHSNGSVR  460 (902)
T ss_dssp             TCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE--EEETTSEEE
T ss_pred             CCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEE--EecCCCcEE
Confidence            221100                                        01233332    67889886443  777899999


Q ss_pred             EEeCCCcceee--Eeccc-ccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC----------
Q 022870          176 IWDLNTAERCT--RLHQN-SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG----------  242 (291)
Q Consensus       176 ~wd~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~----------  242 (291)
                      +||+.++....  .+... ......+|    ...+.+++ |+|+   |+ +||+|+.||+|+|||+.+..          
T Consensus       461 lWd~~~g~~~~~~~~~~~l~~~~~~~h----~~~V~sva-fspd---g~-~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~  531 (902)
T 2oaj_A          461 IYDASHGDIQDNASFEVNLSRTLNKAK----ELAVDKIS-FAAE---TL-ELAVSIETGDVVLFKYEVNQFYSVENRPES  531 (902)
T ss_dssp             EEESSCCTTTTTBCEEEEHHHHTTCSS----SCCEEEEE-EETT---TT-EEEEEETTSCEEEEEEEECCC---------
T ss_pred             EEECCCccccCCceEEeechhhcCCCC----CCceeEEE-ecCC---CC-eEEEEecCcEEEEEEecCccccCccccCCC
Confidence            99998874210  11100 00000022    45688887 9998   55 99999999999999998621          


Q ss_pred             ----------------------------------CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          243 ----------------------------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       243 ----------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                                                        +++..+.+|.+.|++++|+|+| +||+|+.|++|++||++++.+++
T Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~  610 (902)
T 2oaj_A          532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIY  610 (902)
T ss_dssp             ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred             cccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEE
Confidence                                              2366788899999999999999 99999999999999999887654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=6.1e-30  Score=211.13  Aligned_cols=210  Identities=10%  Similarity=0.041  Sum_probs=163.4

Q ss_pred             EecCCccceeEEEEcCCCCEE-EEecCCCeEEEEeCC--CCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           13 VLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      ...+|.+.|++++|+|++++| ++|+.||.|++||+.  +++.+..+..+.....|.+++|+|  ++.+|++++.||.|+
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~~g~v~  174 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--DDTTVIIADKFGDVY  174 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--TSSEEEEEETTSEEE
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--CCCEEEEEeCCCcEE
Confidence            345788899999999999996 899999999999998  888888887554445699999999  999999999999999


Q ss_pred             EEECCCCCCCCCCcccccc--ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCC---CCcEE
Q 022870           90 CWDIENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE---GPKYM  164 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  164 (291)
                      +|++.+.+....+...+..  .....                                        ++|+|+   +..+ 
T Consensus       175 ~~~~~~~~~~~~~~~~~~~h~~~v~~----------------------------------------~~~sp~~~~~~~l-  213 (450)
T 2vdu_B          175 SIDINSIPEEKFTQEPILGHVSMLTD----------------------------------------VHLIKDSDGHQFI-  213 (450)
T ss_dssp             EEETTSCCCSSCCCCCSEECSSCEEE----------------------------------------EEEEECTTSCEEE-
T ss_pred             EEecCCcccccccceeeecccCceEE----------------------------------------EEEcCCCCCCcEE-
Confidence            9999877643211111111  11111                                        558888   6444 


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                      + +|+.|+.|++||+++++.+..+..       +|    ...+.++. |+ +   +. +|++|+.|+.|++||+++ +++
T Consensus       214 ~-s~~~d~~i~vwd~~~~~~~~~~~~-------~h----~~~v~~~~-~s-d---~~-~l~s~~~d~~v~vwd~~~-~~~  274 (450)
T 2vdu_B          214 I-TSDRDEHIKISHYPQCFIVDKWLF-------GH----KHFVSSIC-CG-K---DY-LLLSAGGDDKIFAWDWKT-GKN  274 (450)
T ss_dssp             E-EEETTSCEEEEEESCTTCEEEECC-------CC----SSCEEEEE-EC-S---TT-EEEEEESSSEEEEEETTT-CCE
T ss_pred             E-EEcCCCcEEEEECCCCceeeeeec-------CC----CCceEEEE-EC-C---CC-EEEEEeCCCeEEEEECCC-CcE
Confidence            4 566799999999999988777442       55    45677776 98 6   44 999999999999999998 777


Q ss_pred             eeecccc-------------------------ccceeEEEeecCCCeeEEec-CCCeEEEEEc--CCC
Q 022870          245 LTAMKVH-------------------------LEPVLCLSIDESCNGGISGG-ADQKIVLYNL--DHS  284 (291)
Q Consensus       245 ~~~~~~h-------------------------~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~--~~~  284 (291)
                      +..+..+                         ...|.+++|+|++++|++++ .|+.|++|++  .++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK  342 (450)
T ss_dssp             EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST
T ss_pred             eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC
Confidence            7766532                         35689999999999999998 8999999999  555

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=2.7e-29  Score=214.87  Aligned_cols=256  Identities=17%  Similarity=0.219  Sum_probs=193.5

Q ss_pred             CceEEecCCccc-eeEEEEcC--CCCEEEEecCCCeEEEEeCCCC--------eEEEEEeeecCCcceEEEEEeecCCCC
Q 022870            9 DPVAVLRGHRAS-VTDVCFHQ--TKPILFAGTTGGELRIWDTVQH--------RTVSSSWVHSAAHGIVSVATGPSIGLN   77 (291)
Q Consensus         9 ~~~~~l~~h~~~-v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~   77 (291)
                      ++...+.+|.+. |++++|+|  ++++|++|+.||.|++||+.++        +....+..|..  +|.+++|+|  +++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~--~~~  129 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG--PISDISWDF--EGR  129 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS--CEEEEEECT--TSS
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc--cEEEEEEeC--CCC
Confidence            678999999999 99999999  9999999999999999999744        66677777774  499999999  999


Q ss_pred             eEEEEeCC----CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC-
Q 022870           78 KVISQGRD----GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS-  152 (291)
Q Consensus        78 ~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (291)
                      +|++++.+    +.|++||.  ++...  .+..+........+.+............+...+|+....+.......... 
T Consensus       130 ~l~~~~~~~~~~~~v~~~d~--~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  205 (615)
T 1pgu_A          130 RLCVVGEGRDNFGVFISWDS--GNSLG--EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ  205 (615)
T ss_dssp             EEEEEECCSSCSEEEEETTT--CCEEE--ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT
T ss_pred             EEEEeccCCCCccEEEEEEC--CCcce--eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC
Confidence            99999988    78999983  32221  22233344455555554433444555567778888776654433222222 


Q ss_pred             --C---cccCCC-CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe
Q 022870          153 --K---DDVPAE-GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (291)
Q Consensus       153 --~---~~~~~~-~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (291)
                        .   ++|+|+ ++.++  +++.|+.|++||+++++.+..+..       . .......+.++. |+ +   +. +|++
T Consensus       206 ~~~v~~~~~~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~-------~-~~~~~~~v~~~~-~~-~---~~-~l~~  269 (615)
T 1pgu_A          206 GSFVRDVEFSPDSGEFVI--TVGSDRKISCFDGKSGEFLKYIED-------D-QEPVQGGIFALS-WL-D---SQ-KFAT  269 (615)
T ss_dssp             TCCEEEEEECSTTCCEEE--EEETTCCEEEEETTTCCEEEECCB-------T-TBCCCSCEEEEE-ES-S---SS-EEEE
T ss_pred             CceEEEEEECCCCCCEEE--EEeCCCeEEEEECCCCCEeEEecc-------c-ccccCCceEEEE-Ec-C---CC-EEEE
Confidence              2   899999 76554  566699999999999998887731       0 001355677887 98 6   44 8999


Q ss_pred             ecCCCcEEEEEccCCCCceeecccc----ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          227 GYEDGSILVWDIRNPGIPLTAMKVH----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       227 g~~dg~i~vwd~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ++.||.|++||+++ ++.+..+..+    ...+.++.|. ++.++++++.||.|++||+++++.+..+
T Consensus       270 ~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~  335 (615)
T 1pgu_A          270 VGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTI  335 (615)
T ss_dssp             EETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred             EcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEE
Confidence            99999999999998 7888888766    4678888886 7889999999999999999987776543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=4.5e-30  Score=208.93  Aligned_cols=213  Identities=19%  Similarity=0.252  Sum_probs=161.8

Q ss_pred             CceEEecCCccceeEEEEcCCC-CEEEEecCCCeEEEEeCCCCeEEEEE--eeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870            9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      +++..+.+|...|++++|+|++ .+|++|+.||.|++||+.+++.+..+  ..|...  |.+++|+|  ++++|++++.|
T Consensus       122 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~~~~~d  197 (402)
T 2aq5_A          122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT--IYSVDWSR--DGALICTSCRD  197 (402)
T ss_dssp             SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSC--EEEEEECT--TSSCEEEEETT
T ss_pred             CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCc--eEEEEECC--CCCEEEEEecC
Confidence            5688899999999999999998 69999999999999999999999988  667744  99999999  99999999999


Q ss_pred             CeEEEEECCCCCCCCCCcccc-ccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           86 GTVKCWDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      |.|++||+++++...    .+ ..+... .                                    -..++|+|++.. +
T Consensus       198 ~~i~iwd~~~~~~~~----~~~~~~~~~-~------------------------------------~~~~~~~~~~~~-l  235 (402)
T 2aq5_A          198 KRVRVIEPRKGTVVA----EKDRPHEGT-R------------------------------------PVHAVFVSEGKI-L  235 (402)
T ss_dssp             SEEEEEETTTTEEEE----EEECSSCSS-S------------------------------------CCEEEECSTTEE-E
T ss_pred             CcEEEEeCCCCceee----eeccCCCCC-c------------------------------------ceEEEEcCCCcE-E
Confidence            999999998865322    11 000000 0                                    000558898754 3


Q ss_pred             EEec---CCcCeEEEEeCCCcce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          165 AVAG---EQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       165 ~~~g---~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      + +|   +.|+.|++||+++++. ......       .+    ...+.++. |+|+   ++.++++|+.||.|++||+.+
T Consensus       236 ~-~g~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~----~~~v~~~~-~s~~---~~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          236 T-TGFSRMSERQVALWDTKHLEEPLSLQEL-------DT----SSGVLLPF-FDPD---TNIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             E-EEECTTCCEEEEEEETTBCSSCSEEEEC-------CC----CSSCEEEE-EETT---TTEEEEEETTCSCEEEEEECS
T ss_pred             E-EeccCCCCceEEEEcCccccCCceEEec-------cC----CCceeEEE-EcCC---CCEEEEEEcCCCeEEEEEecC
Confidence            3 55   6799999999998764 222221       12    23466676 9998   442345777899999999998


Q ss_pred             CCCc-eeecccc--ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          241 PGIP-LTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       241 ~~~~-~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                       +++ +..+..|  ...|.+++|+|++.++++  .++.+++|++.++++
T Consensus       300 -~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          300 -EAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             -STTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             -CCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence             553 5555544  589999999999997765  467999999998765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=2.6e-29  Score=199.86  Aligned_cols=240  Identities=12%  Similarity=0.056  Sum_probs=179.8

Q ss_pred             eEEecCCccceeEEEEcCCCC-EEEEecCCCeEEEEeC-CCCeEEEEEee--ecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870           11 VAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDT-VQHRTVSSSWV--HSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~-~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      ...+.+|...|++++|+|++. +|++|+.||.|++||+ .+++. ..+..  |..  +|.+++|+|   +++|++++.|+
T Consensus        49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~--~v~~l~~~~---~~~l~s~~~d~  122 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANL--GICRICKYG---DDKLIAASWDG  122 (342)
T ss_dssp             EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCS--CEEEEEEET---TTEEEEEETTS
T ss_pred             ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCC--ceEEEEeCC---CCEEEEEcCCC
Confidence            556668999999999999999 9999999999999999 77755 56667  774  499999998   48999999999


Q ss_pred             eEEEEECCC---------CCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeeccc-Cccc-cccCCCCCC--
Q 022870           87 TVKCWDIEN---------GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETV-DTDSLCDSK--  153 (291)
Q Consensus        87 ~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~--  153 (291)
                      .|++||+++         .+...  .+. .........+...  . .......+...+|++.. .... ......+..  
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~~~--~~~-~~~~v~~~~~~~~--~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i  196 (342)
T 1yfq_A          123 LIEVIDPRNYGDGVIAVKNLNSN--NTK-VKNKIFTMDTNSS--R-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI  196 (342)
T ss_dssp             EEEEECHHHHTTBCEEEEESCSS--SSS-SCCCEEEEEECSS--E-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCE
T ss_pred             eEEEEcccccccccccccCCeee--EEe-eCCceEEEEecCC--c-EEEEeCCCeEEEEECCccccccceeeecCCCCce
Confidence            999999987         55433  112 2223333333322  2 33344556677788776 3321 122223332  


Q ss_pred             --cccCC-CCCcEEEEecCCcCeEEEEeCCCc------ceeeEecccccCCCCCCCC-----CcceeeeeEEEecCCCCC
Q 022870          154 --DDVPA-EGPKYMAVAGEQLSEVEIWDLNTA------ERCTRLHQNSCGGSPNFSS-----KGRGMCMAVQAYLPSKSQ  219 (291)
Q Consensus       154 --~~~~~-~~~~~~~~~g~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~  219 (291)
                        ++|+| ++..++  +++.||.|++||++..      +....+.        .|..     .....+.++. |+|+   
T Consensus       197 ~~i~~~~~~~~~l~--~~~~dg~i~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~-~s~~---  262 (342)
T 1yfq_A          197 RDVALLPKEQEGYA--CSSIDGRVAVEFFDDQGDDYNSSKRFAFR--------CHRLNLKDTNLAYPVNSIE-FSPR---  262 (342)
T ss_dssp             EEEEECSGGGCEEE--EEETTSEEEEEECCTTCCSTTCTTCEEEE--------CCCCCTTCCSSCCCEEEEE-ECTT---
T ss_pred             eEEEECCCCCCEEE--EEecCCcEEEEEEcCCCcccccccceeee--------cccccccccccceeEEEEE-EcCC---
Confidence              89999 886554  5666999999999887      6667776        4433     1234678887 9998   


Q ss_pred             CceEEEeecCCCcEEEEEccCCCCceeecccc-ccceeEEEeecCCCeeEEecCCCe-EEEEE
Q 022870          220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-LEPVLCLSIDESCNGGISGGADQK-IVLYN  280 (291)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~-i~vw~  280 (291)
                      ++ +|++|+.||.|++||+++ ++++..+.+| ...|++++  |++.+|++++.||. .+.|.
T Consensus       263 ~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          263 HK-FLYTAGSDGIISCWNLQT-RKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             TC-CEEEEETTSCEEEEETTT-TEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             CC-EEEEecCCceEEEEcCcc-HhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence            44 899999999999999998 8889999998 99999999  99999999999998 44444

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=3.3e-28  Score=197.12  Aligned_cols=252  Identities=11%  Similarity=0.068  Sum_probs=186.2

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCC
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD   85 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d   85 (291)
                      .+.+..+.+|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+.   .+.+++|+|  ++++|+ +++.+
T Consensus        22 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~v~~~~~sp--dg~~l~~~~~~~   95 (391)
T 1l0q_A           22 NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS---SPQGVAVSP--DGKQVYVTNMAS   95 (391)
T ss_dssp             TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SEEEEEECT--TSSEEEEEETTT
T ss_pred             CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC---CccceEECC--CCCEEEEEECCC
Confidence            45667777775 48999999999876 677899999999999999988887654   499999999  888775 55567


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC---cccCCCCCc
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPK  162 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  162 (291)
                      +.|++||+.+++...  ..... .......+++.................|++...+..... ..+..   ++|+|+++.
T Consensus        96 ~~v~v~d~~~~~~~~--~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~dg~~  171 (391)
T 1l0q_A           96 STLSVIDTTSNTVAG--TVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV-SVGRSPKGIAVTPDGTK  171 (391)
T ss_dssp             TEEEEEETTTTEEEE--EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-ECCSSEEEEEECTTSSE
T ss_pred             CEEEEEECCCCeEEE--EEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE-ecCCCcceEEECCCCCE
Confidence            999999999876533  11211 223333444443333233444566777777665543322 22222   899999987


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec---CCCcEEEEEcc
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDIR  239 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---~dg~i~vwd~~  239 (291)
                      +++ +++.++.|++||+++++....+..             ...+.++. |+|+   |+ +|++++   .++.|++||++
T Consensus       172 l~~-~~~~~~~v~~~d~~~~~~~~~~~~-------------~~~~~~~~-~~~~---g~-~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          172 VYV-ANFDSMSISVIDTVTNSVIDTVKV-------------EAAPSGIA-VNPE---GT-KAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             EEE-EETTTTEEEEEETTTTEEEEEEEC-------------SSEEEEEE-ECTT---SS-EEEEEEECSSCCEEEEEETT
T ss_pred             EEE-EeCCCCEEEEEECCCCeEEEEEec-------------CCCccceE-ECCC---CC-EEEEEecCcCCCcEEEEECC
Confidence            755 566689999999999988777751             23456676 9998   44 666666   78999999999


Q ss_pred             CCCCceeeccccccceeEEEeecCCCee-EEecCCCeEEEEEcCCCceeeee
Q 022870          240 NPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      + ++++..+..|. .+.+++|+|++++| ++++.|+.|++||+++++++..+
T Consensus       233 ~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          233 T-NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             T-TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             C-CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence            8 77788887765 47899999999877 67789999999999999887654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-30  Score=206.18  Aligned_cols=199  Identities=11%  Similarity=0.037  Sum_probs=149.2

Q ss_pred             EEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcc
Q 022870           25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSL  104 (291)
Q Consensus        25 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  104 (291)
                      .+.+++.+|++|+.||+|++||+.+++.+..+.  .  ..|.++.|+|  +   +++++.|++|++|+......    ..
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~--~~v~~~~~~~--~---~~s~s~D~~i~~w~~~~~~~----~~  109 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--T--PNPRTGGEHP--A---IISRGPCNRLLLLYPGNQIT----IL  109 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--E--ECCCTTCCCC--S---EEEECSTTEEEEEETTTEEE----EE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--c--CCceeeeeCC--c---eEEecCCCeEEEEEccCceE----Ee
Confidence            344578899999999999999999999888876  2  3488999999  5   99999999999999874211    00


Q ss_pred             ccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCC--CCCcEEEEecCCcCeEEEEe
Q 022870          105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA--EGPKYMAVAGEQLSEVEIWD  178 (291)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~g~~d~~i~~wd  178 (291)
                      .......                                .......|..    ++|+|  ++..++  +++.||.|++||
T Consensus       110 ~~~~~~~--------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~s~dg~i~~wd  155 (343)
T 3lrv_A          110 DSKTNKV--------------------------------LREIEVDSANEIIYMYGHNEVNTEYFI--WADNRGTIGFQS  155 (343)
T ss_dssp             ETTTCCE--------------------------------EEEEECCCSSCEEEEECCC---CCEEE--EEETTCCEEEEE
T ss_pred             ecCCcce--------------------------------eEEeecCCCCCEEEEEcCCCCCCCEEE--EEeCCCcEEEEE
Confidence            1111100                                0000001111    66899  876544  667799999999


Q ss_pred             CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce-eeccc-ccccee
Q 022870          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TAMKV-HLEPVL  256 (291)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~-h~~~v~  256 (291)
                      +++++.......       .+    ...+.++. |+|+   |. +|++|+.||.|++||+++ ++.+ ..+.. |.++|+
T Consensus       156 ~~~~~~~~~~~~-------~~----~~~i~~~~-~~pd---g~-~lasg~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~  218 (343)
T 3lrv_A          156 YEDDSQYIVHSA-------KS----DVEYSSGV-LHKD---SL-LLALYSPDGILDVYNLSS-PDQASSRFPVDEEAKIK  218 (343)
T ss_dssp             SSSSCEEEEECC-------CS----SCCCCEEE-ECTT---SC-EEEEECTTSCEEEEESSC-TTSCCEECCCCTTSCEE
T ss_pred             CCCCcEEEEEec-------CC----CCceEEEE-ECCC---CC-EEEEEcCCCEEEEEECCC-CCCCccEEeccCCCCEE
Confidence            999988666542       22    23467776 9998   44 999999999999999998 5655 77887 999999


Q ss_pred             EEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          257 CLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       257 ~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      +++|+|++.+|++++ |+.|++||+++++.++
T Consensus       219 ~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~  249 (343)
T 3lrv_A          219 EVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL  249 (343)
T ss_dssp             EEEECTTSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred             EEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce
Confidence            999999999999999 5599999999987654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=4.9e-29  Score=199.31  Aligned_cols=213  Identities=16%  Similarity=0.256  Sum_probs=158.7

Q ss_pred             eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCC
Q 022870           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN  130 (291)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (291)
                      +....+.+|...  |.+++|+|  ++.+|++|+.||+|++||..+.+...  ....+......+.+++...... .....
T Consensus        55 ~~~~~l~gH~~~--V~~~~~s~--d~~~l~s~s~Dg~v~vWd~~~~~~~~--~~~~~~~~v~~~~~sp~g~~la-sg~~d  127 (354)
T 2pbi_B           55 KTRRTLKGHGNK--VLCMDWCK--DKRRIVSSSQDGKVIVWDSFTTNKEH--AVTMPCTWVMACAYAPSGCAIA-CGGLD  127 (354)
T ss_dssp             CEEEEEECCSSC--EEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEE--EEECSSSCCCEEEECTTSSEEE-EESTT
T ss_pred             EEEEEecCCCCe--EEEEEECC--CCCEEEEEeCCCeEEEEECCCCCcce--EEecCCCCEEEEEECCCCCEEE-EeeCC
Confidence            566788899855  99999999  99999999999999999998775433  2233333334444444432222 22223


Q ss_pred             CCceeeecccCc-----cccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCC
Q 022870          131 EPKDCYEREVGE-----TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS  201 (291)
Q Consensus       131 ~~~~~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  201 (291)
                      ....+|++....     .....+..|..    ++|+|++..++  +++.|++|++||+++++.+..+.        +|..
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~--t~s~D~~v~lwd~~~~~~~~~~~--------~h~~  197 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQIL--TASGDGTCALWDVESGQLLQSFH--------GHGA  197 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEE--EEETTSEEEEEETTTCCEEEEEE--------CCSS
T ss_pred             CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEE--EEeCCCcEEEEeCCCCeEEEEEc--------CCCC
Confidence            344555543221     12223334554    88999987665  56679999999999999998888        6643


Q ss_pred             CcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                          .+.++. |+|+.. |. +|++|+.||.|++||+++ ++++..+.+|...|++++|+|++.+|++++.|++|++||+
T Consensus       198 ----~v~~~~-~~~~~~-g~-~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~  269 (354)
T 2pbi_B          198 ----DVLCLD-LAPSET-GN-TFVSGGCDKKAMVWDMRS-GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL  269 (354)
T ss_dssp             ----CEEEEE-ECCCSS-CC-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ----CeEEEE-EEeCCC-CC-EEEEEeCCCeEEEEECCC-CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence                456665 877532 44 899999999999999998 8889999999999999999999999999999999999999


Q ss_pred             CCCceee
Q 022870          282 DHSTVSH  288 (291)
Q Consensus       282 ~~~~~~~  288 (291)
                      +.++.+.
T Consensus       270 ~~~~~~~  276 (354)
T 2pbi_B          270 RADREVA  276 (354)
T ss_dssp             TTTEEEE
T ss_pred             CCCcEEE
Confidence            9876553

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-29  Score=208.12  Aligned_cols=209  Identities=10%  Similarity=0.065  Sum_probs=159.5

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe---EEEEEeeecC---------------------------------
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSA---------------------------------   61 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~---------------------------------   61 (291)
                      ..++.+++|+++|++|+++ .++.|++||+.+++   .+..+..+..                                 
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4578999999999966665 57899999999988   6655543221                                 


Q ss_pred             -------------------CcceEEEEEeecCCCCeE-EEEeCCCeEEEEECC--CCCCCCCCcccccc--ce-EEEEEe
Q 022870           62 -------------------AHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIE--NGGLSSNPSLTIKT--NS-YHFCKL  116 (291)
Q Consensus        62 -------------------~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~--~~-~~~~~~  116 (291)
                                         ...|.+++|+|  ++.+| ++++.||.|++||+.  +++...    .+..  .. ...+  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~~~v~~--  154 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTSKNVLK----LRKRFCFSKRPNA--  154 (450)
T ss_dssp             -----------------CCCCCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSSSSCEE----EEEEEECSSCEEE--
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCCCceee----eeecccCCCCceE--
Confidence                               01499999999  98986 899999999999998  554322    1110  00 0000  


Q ss_pred             ecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceee----Eecccc
Q 022870          117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT----RLHQNS  192 (291)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~----~~~~~~  192 (291)
                                                           ++|+|++..++  +|+.||.+++||+.+++...    .+.   
T Consensus       155 -------------------------------------~~~sp~~~~l~--~~~~~g~v~~~~~~~~~~~~~~~~~~~---  192 (450)
T 2vdu_B          155 -------------------------------------ISIAEDDTTVI--IADKFGDVYSIDINSIPEEKFTQEPIL---  192 (450)
T ss_dssp             -------------------------------------EEECTTSSEEE--EEETTSEEEEEETTSCCCSSCCCCCSE---
T ss_pred             -------------------------------------EEEcCCCCEEE--EEeCCCcEEEEecCCcccccccceeee---
Confidence                                                 66999997665  55668999999998876543    333   


Q ss_pred             cCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee-ccccccceeEEEeecCCCeeEEec
Q 022870          193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MKVHLEPVLCLSIDESCNGGISGG  271 (291)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s  271 (291)
                           +|    ...+.++. |+|+...++ +|++|+.|+.|++||+++ ++.+.. +.+|...|++++|+ ++.+|++++
T Consensus       193 -----~h----~~~v~~~~-~sp~~~~~~-~l~s~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~  259 (450)
T 2vdu_B          193 -----GH----VSMLTDVH-LIKDSDGHQ-FIITSDRDEHIKISHYPQ-CFIVDKWLFGHKHFVSSICCG-KDYLLLSAG  259 (450)
T ss_dssp             -----EC----SSCEEEEE-EEECTTSCE-EEEEEETTSCEEEEEESC-TTCEEEECCCCSSCEEEEEEC-STTEEEEEE
T ss_pred             -----cc----cCceEEEE-EcCCCCCCc-EEEEEcCCCcEEEEECCC-CceeeeeecCCCCceEEEEEC-CCCEEEEEe
Confidence                 44    34677787 999711133 899999999999999998 666666 66899999999999 999999999


Q ss_pred             CCCeEEEEEcCCCceeeee
Q 022870          272 ADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       272 ~dg~i~vw~~~~~~~~~~~  290 (291)
                      .|+.|++||++++++++.+
T Consensus       260 ~d~~v~vwd~~~~~~~~~~  278 (450)
T 2vdu_B          260 GDDKIFAWDWKTGKNLSTF  278 (450)
T ss_dssp             SSSEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEECCCCcEeeee
Confidence            9999999999999887654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=7.8e-29  Score=204.22  Aligned_cols=249  Identities=10%  Similarity=0.106  Sum_probs=175.9

Q ss_pred             ceEEecCCc------------cceeEEEEcCCC--CEEEEecCCCeEEEEeCCCCeEE----------------------
Q 022870           10 PVAVLRGHR------------ASVTDVCFHQTK--PILFAGTTGGELRIWDTVQHRTV----------------------   53 (291)
Q Consensus        10 ~~~~l~~h~------------~~v~~l~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~----------------------   53 (291)
                      +...+.+|.            +.|++++|+|++  .+|++++.|++|++||+.+++..                      
T Consensus        73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  152 (447)
T 3dw8_B           73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL  152 (447)
T ss_dssp             EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred             EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence            577899998            889999999988  79999999999999998764432                      


Q ss_pred             -----------------EE-EeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC-CCC-----CCccccccc
Q 022870           54 -----------------SS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG-LSS-----NPSLTIKTN  109 (291)
Q Consensus        54 -----------------~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~-----~~~~~~~~~  109 (291)
                                       .. ...|.  .+|.+++|+|  ++++|++| .|+.|++||+++.. ...     ...+..+..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  227 (447)
T 3dw8_B          153 RVPVFRPMDLMVEASPRRIFANAHT--YHINSISINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTE  227 (447)
T ss_dssp             CCCEEEEEEEEEEEEEEEEECSCCS--SCCCEEEECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC
T ss_pred             EeccccchheeeeccceEEeccCCC--cceEEEEEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCc
Confidence                             12 24566  4599999999  99999998 79999999998432 111     001223333


Q ss_pred             eEEEEEeecccCccceeccCCCCceeeecccCccc---cccCCCCC-------------C---cccCCCCCcEEEEecCC
Q 022870          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV---DTDSLCDS-------------K---DDVPAEGPKYMAVAGEQ  170 (291)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------------~---~~~~~~~~~~~~~~g~~  170 (291)
                      ......+.+............+...+|+++.....   ...+..|.             .   ++|+|++..++  +++.
T Consensus       228 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~--~~~~  305 (447)
T 3dw8_B          228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM--TRDY  305 (447)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEE--EEES
T ss_pred             ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEE--EeeC
Confidence            45555555544334445556677888988776541   22333332             3   89999997655  5555


Q ss_pred             cCeEEEEeCCC-cceeeEecccccCCCCCCCCCcce-----------eeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870          171 LSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRG-----------MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI  238 (291)
Q Consensus       171 d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~  238 (291)
                       +.|++||+++ ++++..+.        +|......           .+..+. |+|+   ++ +|++|+.||.|++||+
T Consensus       306 -~~v~iwd~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~i~~~~~~~-~s~~---~~-~l~s~s~dg~v~iwd~  371 (447)
T 3dw8_B          306 -LSVKVWDLNMENRPVETYQ--------VHEYLRSKLCSLYENDCIFDKFECC-WNGS---DS-VVMTGSYNNFFRMFDR  371 (447)
T ss_dssp             -SEEEEEETTCCSSCSCCEE--------SCGGGTTTHHHHHHTSGGGCCCCEE-ECTT---SS-EEEEECSTTEEEEEET
T ss_pred             -CeEEEEeCCCCccccceee--------ccccccccccccccccccccceEEE-ECCC---CC-EEEEeccCCEEEEEEc
Confidence             9999999997 77777777        45321110           123365 9998   44 8999999999999999


Q ss_pred             cCCCCceeecc---------------------------------ccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          239 RNPGIPLTAMK---------------------------------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       239 ~~~~~~~~~~~---------------------------------~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      ++ ++.+ .+.                                 .+...|..++|+|++++||+++.++ +++|.-+
T Consensus       372 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          372 NT-KRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             TT-CCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             CC-Ccce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence            87 5443 221                                 2345789999999999999998776 7777643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.3e-29  Score=197.28  Aligned_cols=209  Identities=11%  Similarity=0.143  Sum_probs=148.8

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCC---------CCeEEEEEe-eecCCcceEEEEEeecCCCCe
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV---------QHRTVSSSW-VHSAAHGIVSVATGPSIGLNK   78 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~---------~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~   78 (291)
                      +.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +++.+..+. .|.  .+|.+++|+|..++++
T Consensus        69 ~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~  141 (343)
T 3lrv_A           69 KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA--NEIIYMYGHNEVNTEY  141 (343)
T ss_dssp             SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS--SCEEEEECCC---CCE
T ss_pred             cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC--CCEEEEEcCCCCCCCE
Confidence            3344444  467888899988   9999999999999765         444444444 343  4599999999545689


Q ss_pred             EEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCC
Q 022870           79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA  158 (291)
Q Consensus        79 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (291)
                      +++++.||+|++||+++++...  ...........+                                       ++|+|
T Consensus       142 l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~~i~~---------------------------------------~~~~p  180 (343)
T 3lrv_A          142 FIWADNRGTIGFQSYEDDSQYI--VHSAKSDVEYSS---------------------------------------GVLHK  180 (343)
T ss_dssp             EEEEETTCCEEEEESSSSCEEE--EECCCSSCCCCE---------------------------------------EEECT
T ss_pred             EEEEeCCCcEEEEECCCCcEEE--EEecCCCCceEE---------------------------------------EEECC
Confidence            9999999999999999875421  000000000000                                       66999


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCCccee-eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNTAERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (291)
                      ++..++  +|+.||.|++||+++++.+ ..+..       +|    ...+.++. |+|+   |. +|++++ |+.|++||
T Consensus       181 dg~~la--sg~~dg~i~iwd~~~~~~~~~~~~~-------~h----~~~v~~l~-fs~~---g~-~l~s~~-~~~v~iwd  241 (343)
T 3lrv_A          181 DSLLLA--LYSPDGILDVYNLSSPDQASSRFPV-------DE----EAKIKEVK-FADN---GY-WMVVEC-DQTVVCFD  241 (343)
T ss_dssp             TSCEEE--EECTTSCEEEEESSCTTSCCEECCC-------CT----TSCEEEEE-ECTT---SS-EEEEEE-SSBEEEEE
T ss_pred             CCCEEE--EEcCCCEEEEEECCCCCCCccEEec-------cC----CCCEEEEE-EeCC---CC-EEEEEe-CCeEEEEE
Confidence            986444  6778999999999999877 66661       25    45678887 9998   44 899998 55999999


Q ss_pred             ccCCCCceeeccc---ccccee--EEEeecCCCeeEEecC-CCeEEEEEcCCCc
Q 022870          238 IRNPGIPLTAMKV---HLEPVL--CLSIDESCNGGISGGA-DQKIVLYNLDHST  285 (291)
Q Consensus       238 ~~~~~~~~~~~~~---h~~~v~--~~~~~~~~~~l~s~s~-dg~i~vw~~~~~~  285 (291)
                      +++ .+.+..+..   |...+.  +++|+|++++|++++. |+.|++|++++..
T Consensus       242 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          242 LRK-DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             TTS-STTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             cCC-CCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence            998 666555443   444554  5999999999999988 9999999996653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-28  Score=201.82  Aligned_cols=199  Identities=8%  Similarity=0.036  Sum_probs=149.6

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC---CcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA---AHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      +|...|.+++|+|+|.+||+++.||+|++||.+.  ++..+. |..   ...|.+++|+|  +|++|++|+.||+|++||
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP--DG~~LAsgs~DGtVkIWd  157 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP--IESSIVVGNEDGELQFFS  157 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS--SSSCEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC--CCCEEEEEcCCCEEEEEE
Confidence            5688999999999999999999999999999543  666666 542   12499999999  999999999999999999


Q ss_pred             CCCCCCCCC---CccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEE
Q 022870           93 IENGGLSSN---PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (291)
Q Consensus        93 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  165 (291)
                      +.++.....   .+.+++..                                      ..+|..    ++|+|+|  ++ 
T Consensus       158 ~~~~~l~~~~~i~l~ti~~~--------------------------------------~~gh~~~V~sVawSPdg--La-  196 (588)
T 2j04_A          158 IRKNSENTPEFYFESSIRLS--------------------------------------DAGSKDWVTHIVWYEDV--LV-  196 (588)
T ss_dssp             CCCCTTTCCCCEEEEEEECS--------------------------------------CTTCCCCEEEEEEETTE--EE-
T ss_pred             CCCCccccccceeeeeeecc--------------------------------------cccccccEEEEEEcCCc--EE-
Confidence            998643110   01111100                                      001111    6799998  44 


Q ss_pred             EecCCcCeEEEEeCCCccee---eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870          166 VAGEQLSEVEIWDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG  242 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~  242 (291)
                       +++.|+.|++||+..++..   .++..       +|    +..+.+++ |+ +    + .|++++ ++.|++||+.+ +
T Consensus       197 -ass~D~tVrlWd~~~~~~~~~~~tL~~-------~h----~~~V~sva-Fs-g----~-~LASa~-~~tIkLWd~~~-~  255 (588)
T 2j04_A          197 -AALSNNSVFSMTVSASSHQPVSRMIQN-------AS----RRKITDLK-IV-D----Y-KVVLTC-PGYVHKIDLKN-Y  255 (588)
T ss_dssp             -EEETTCCEEEECCCSSSSCCCEEEEEC-------CC----SSCCCCEE-EE-T----T-EEEEEC-SSEEEEEETTT-T
T ss_pred             -EEeCCCeEEEEECCCCccccceeeecc-------cc----cCcEEEEE-EE-C----C-EEEEEe-CCeEEEEECCC-C
Confidence             3445999999999887742   34531       33    34677776 98 2    2 788887 69999999996 5


Q ss_pred             CceeeccccccceeEEEe--ecCCCeeEEecCCCeEEEEEcC
Q 022870          243 IPLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      +......+|.+.|.+++|  +|++..|++++.||+ ++|..+
T Consensus       256 ~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          256 SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            553333389999999999  999999999999999 999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=1e-27  Score=187.20  Aligned_cols=214  Identities=18%  Similarity=0.205  Sum_probs=152.3

Q ss_pred             CceEEecCCccceeEEEEcC--CCCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            9 DPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      +++.++.+|.++|++++|++  ++++|++|+.|++|++||+++++  .+..+..|...  |.+++|+|..++.+|++++.
T Consensus        44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~--v~~v~~~p~~~g~~l~s~s~  121 (297)
T 2pm7_B           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS--VNSVQWAPHEYGPMLLVASS  121 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC--EEEEEECCGGGCSEEEEEET
T ss_pred             EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc--eeEEEeCcCCCCcEEEEEEC
Confidence            56789999999999999986  48899999999999999998764  55667777754  99999999212789999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeeccc------------CccceeccCCCCceeeecccCcc---ccccCC
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK------------EPYANAKQANEPKDCYEREVGET---VDTDSL  149 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  149 (291)
                      |++|++||+++........+..+........+++..            ..........+...+|+++....   ....+.
T Consensus       122 d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~  201 (297)
T 2pm7_B          122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE  201 (297)
T ss_dssp             TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred             CCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec
Confidence            999999999876432111222233344444444432            11233344556778888765441   334567


Q ss_pred             CCCC----cccCCCC--CcEEEEecCCcCeEEEEeCCCcce--e-eEecccccCCCCCCCCCcceeeeeEEEecCCCCCC
Q 022870          150 CDSK----DDVPAEG--PKYMAVAGEQLSEVEIWDLNTAER--C-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (291)
Q Consensus       150 ~~~~----~~~~~~~--~~~~~~~g~~d~~i~~wd~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  220 (291)
                      +|..    ++|+|++  ..+++ +++.|++|++||++....  . ..+...      .|    ...+.++. |+|+   |
T Consensus       202 ~H~~~V~~v~~sp~~~~~~~la-s~s~D~~v~iWd~~~~~~~~~~~~~~~~------~~----~~~v~~~~-~s~~---g  266 (297)
T 2pm7_B          202 GHSDWVRDVAWSPTVLLRSYMA-SVSQDRTCIIWTQDNEQGPWKKTLLKEE------KF----PDVLWRAS-WSLS---G  266 (297)
T ss_dssp             CCSSCEEEEEECCCCSSSEEEE-EEETTSCEEEEEESSTTSCCEEEESSSS------CC----SSCEEEEE-ECSS---S
T ss_pred             CCCCceEEEEECCCCCCceEEE-EEECCCcEEEEEeCCCCCccceeeeecc------cC----CCcEEEEE-ECCC---C
Confidence            7776    8999996  34555 677799999999987532  1 122100      23    45677887 9998   4


Q ss_pred             ceEEEeecCCCcEEEEEccC
Q 022870          221 FVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~  240 (291)
                      + +|++++.||.|++|+...
T Consensus       267 ~-~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          267 N-VLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             C-CEEEEETTSCEEEEEECT
T ss_pred             C-EEEEEcCCCcEEEEEECC
Confidence            4 899999999999999874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-28  Score=201.34  Aligned_cols=199  Identities=7%  Similarity=0.092  Sum_probs=148.1

Q ss_pred             cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE-----------------------------EEEe-eecCCcc
Q 022870           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----------------------------SSSW-VHSAAHG   64 (291)
Q Consensus        15 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-----------------------------~~~~-~~~~~~~   64 (291)
                      +.-...|.+++|+|||+++||++.|++|+  |...++.+                             ..+. .|.  ..
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~--~~   87 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPV--CY   87 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCS--CC
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCC--Cc
Confidence            44568899999999999999999999996  43332211                             1111 232  56


Q ss_pred             eEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccc-cc-----eEEEEEeecccCccceeccCCCCceeeec
Q 022870           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIK-TN-----SYHFCKLSLVKEPYANAKQANEPKDCYER  138 (291)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
                      |.+++|+|  +|.+|++++.||.|++||.+.  +..    .+. ..     ... +                        
T Consensus        88 V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~----~l~~~~~~~~~sv~-s------------------------  134 (588)
T 2j04_A           88 PRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLT----NLDSKGNLSSRTYH-C------------------------  134 (588)
T ss_dssp             EEEEEECS--SSSCEEEEETTSCEEEEETTE--EEE----ECCCSSCSTTTCEE-E------------------------
T ss_pred             EEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eee----eccCCCccccccEE-E------------------------
Confidence            99999999  999999999999999999543  111    111 00     011 1                        


Q ss_pred             ccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcce-------eeEecccccCCCCCCCCCcceeeeeEE
Q 022870          139 EVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-------CTRLHQNSCGGSPNFSSKGRGMCMAVQ  211 (291)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (291)
                                     ++|+|+|+.++  +|+.||+|++||+.++..       +.++.        .|...+...+.+++
T Consensus       135 ---------------vafSPDG~~LA--sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~--------~~~~gh~~~V~sVa  189 (588)
T 2j04_A          135 ---------------FEWNPIESSIV--VGNEDGELQFFSIRKNSENTPEFYFESSIR--------LSDAGSKDWVTHIV  189 (588)
T ss_dssp             ---------------EEECSSSSCEE--EEETTSEEEEEECCCCTTTCCCCEEEEEEE--------CSCTTCCCCEEEEE
T ss_pred             ---------------EEEcCCCCEEE--EEcCCCEEEEEECCCCccccccceeeeeee--------cccccccccEEEEE
Confidence                           67999998765  567799999999998753       45554        23333356788997


Q ss_pred             EecCCCCCCceEEEeecCCCcEEEEEccCCCCc---eeec-cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP---LTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       212 ~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~---~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                       |+|+   |   +++++.|+.|++||+.. +..   ...+ .+|...|.+++|+  +..||+++ ++.|++||+.+++.
T Consensus       190 -wSPd---g---Laass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~  257 (588)
T 2j04_A          190 -WYED---V---LVAALSNNSVFSMTVSA-SSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI  257 (588)
T ss_dssp             -EETT---E---EEEEETTCCEEEECCCS-SSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred             -EcCC---c---EEEEeCCCeEEEEECCC-CccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE
Confidence             9998   4   78888999999999987 442   3456 4788999999999  57889887 69999999998887

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=3.1e-27  Score=185.96  Aligned_cols=214  Identities=15%  Similarity=0.239  Sum_probs=152.7

Q ss_pred             CCceEEe--cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC------------------------
Q 022870            8 PDPVAVL--RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA------------------------   61 (291)
Q Consensus         8 ~~~~~~l--~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------------------------   61 (291)
                      +++++.+  .+|...|++++|+|++++|++|+.||+|++||+++++++..+.+|..                        
T Consensus        55 g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~  134 (318)
T 4ggc_A           55 GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHH  134 (318)
T ss_dssp             CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEee
Confidence            4555555  47888999999999999999999999999999999887665543221                        


Q ss_pred             ---------------CcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccccc--ceEEEEEeecccCccc
Q 022870           62 ---------------AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYA  124 (291)
Q Consensus        62 ---------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  124 (291)
                                     ...+..+.+.+  ++.+|++++.||+|++||+++++...........  .......+........
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  212 (318)
T 4ggc_A          135 DVRVAEHHVATLSGHSQEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL  212 (318)
T ss_dssp             ETTSSSCEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEE
T ss_pred             ecCCCceeEEEEcCccCceEEEEEcC--CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEE
Confidence                           13477778888  8899999999999999999987654322222222  2223333333222222


Q ss_pred             ee--ccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCC
Q 022870          125 NA--KQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS  200 (291)
Q Consensus       125 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  200 (291)
                      ..  ........+|+................  +.|+|++..+++++|+.|+.|++||+++++++..+.        +|.
T Consensus       213 ~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--------gH~  284 (318)
T 4ggc_A          213 ATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--------GHT  284 (318)
T ss_dssp             EEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--------CCS
T ss_pred             EEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--------CCC
Confidence            11  122234555666555443332222222  889999999888788889999999999999999998        774


Q ss_pred             CCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                          ..+.+++ |+|+   |+ +|++|+.||.|+|||+.+
T Consensus       285 ----~~V~~l~-~spd---g~-~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          285 ----SRVLSLT-MSPD---GA-TVASAAADETLRLWRCFE  315 (318)
T ss_dssp             ----SCEEEEE-ECTT---SS-CEEEEETTTEEEEECCSC
T ss_pred             ----CCEEEEE-EcCC---CC-EEEEEecCCeEEEEECCC
Confidence                4678887 9998   44 899999999999999976

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=5.3e-27  Score=192.59  Aligned_cols=242  Identities=11%  Similarity=0.025  Sum_probs=176.2

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEE
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCW   91 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw   91 (291)
                      .+.+|.+.|.+++|++++.++++++.|+.|++||+++++.+..+..|...  +.+++|+|  +++.++ +++.|+.|++|
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~l~~~~~~~~~i~~~  239 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW--SKILLYDP--IRDLVYCSNWISEDISVI  239 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS--EEEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC--eeEEEEcC--CCCEEEEEecCCCcEEEE
Confidence            45689999999999999999999999999999999999999888877744  99999999  888775 55589999999


Q ss_pred             ECCCCCCCCCCcccccc-ceEEEEEeecccCccceecc-------CCCCceeeecccCccccccC-CCCCC-cccCCCCC
Q 022870           92 DIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQ-------ANEPKDCYEREVGETVDTDS-LCDSK-DDVPAEGP  161 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~  161 (291)
                      |+++++...    .+.. .......+++..........       ..+....|++.......... ..... ++|+|+++
T Consensus       240 d~~~~~~~~----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~  315 (433)
T 3bws_A          240 DRKTKLEIR----KTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTEN  315 (433)
T ss_dssp             ETTTTEEEE----ECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTT
T ss_pred             ECCCCcEEE----EecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCC
Confidence            998876432    2222 12233333333322222222       12344567766554332211 11111 88999998


Q ss_pred             cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC------------
Q 022870          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE------------  229 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~------------  229 (291)
                      .+++ +++.|+.|++||+++++....+..             ...+.++. |+|+   |+ ++++++.            
T Consensus       316 ~l~~-~~~~~~~v~v~d~~~~~~~~~~~~-------------~~~~~~~~-~s~d---g~-~l~~~~~~~~~~~~~~~~~  376 (433)
T 3bws_A          316 KIYV-SDMCCSKIEVYDLKEKKVQKSIPV-------------FDKPNTIA-LSPD---GK-YLYVSCRGPNHPTEGYLKK  376 (433)
T ss_dssp             EEEE-EETTTTEEEEEETTTTEEEEEEEC-------------SSSEEEEE-ECTT---SS-EEEEEECCCCCTTTCTTSC
T ss_pred             EEEE-EecCCCEEEEEECCCCcEEEEecC-------------CCCCCeEE-EcCC---CC-EEEEEecCCCccccccccc
Confidence            7766 556689999999999888777752             23356676 9998   44 6666655            


Q ss_pred             ---CCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecC-CCeEEEEEcCC
Q 022870          230 ---DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDH  283 (291)
Q Consensus       230 ---dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~i~vw~~~~  283 (291)
                         ||.|++||+.+ ++.+..+.. ...+.+++|+|++++|++++. |+.|++|+++.
T Consensus       377 g~~dg~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          377 GLVLGKVYVIDTTT-DTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CSSCCEEEEEETTT-TEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             cccceEEEEEECCC-CcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence               57999999998 777777776 457899999999999987764 99999999874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=1e-27  Score=191.04  Aligned_cols=208  Identities=12%  Similarity=0.102  Sum_probs=154.0

Q ss_pred             eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCc-cccccceEEEEEeecccCccceeccC
Q 022870           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS-LTIKTNSYHFCKLSLVKEPYANAKQA  129 (291)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (291)
                      +++..+.+|.. ..|.+++|+|  ++.+|++|+.|++|++||+.++....... ...+........+++.... ......
T Consensus         6 ~~~~~~~~h~~-~~v~~l~~sp--~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~s~   81 (345)
T 3fm0_A            6 VLLGRVPAHPD-SRCWFLAWNP--AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY-LASASF   81 (345)
T ss_dssp             EEEEEECCSTT-SCEEEEEECT--TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSE-EEEEET
T ss_pred             EEeeeecCCCC-CcEEEEEECC--CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCE-EEEEEC
Confidence            56677888875 2599999999  99999999999999999998764321101 1223344555555554322 233344


Q ss_pred             CCCceeeecccCc-cccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcce---eeEecccccCCCCCCCC
Q 022870          130 NEPKDCYEREVGE-TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFSS  201 (291)
Q Consensus       130 ~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~  201 (291)
                      .+...+|++.... .....+.+|..    ++|+|+++.++  +|+.|+.|++||++++..   +..+.        +|  
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~--s~s~D~~v~iwd~~~~~~~~~~~~~~--------~h--  149 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLA--TCSRDKSVWVWEVDEEDEYECVSVLN--------SH--  149 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEEECTTSCEEEEEEEC--------CC--
T ss_pred             CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEE--EEECCCeEEEEECCCCCCeEEEEEec--------Cc--
Confidence            5567778776554 23445667766    89999997554  677799999999987643   34444        55  


Q ss_pred             CcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC--ceeeccccccceeEEEeecCCCeeEEecCCCeEEEE
Q 022870          202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY  279 (291)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  279 (291)
                        ...+.++. |+|+   ++ +|++|+.|+.|++||.++ +.  +...+.+|...|++++|+|++++|++++.|++|++|
T Consensus       150 --~~~v~~~~-~~p~---~~-~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW  221 (345)
T 3fm0_A          150 --TQDVKHVV-WHPS---QE-LLASASYDDTVKLYREEE-DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW  221 (345)
T ss_dssp             --CSCEEEEE-ECSS---SS-CEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             --CCCeEEEE-ECCC---CC-EEEEEeCCCcEEEEEecC-CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence              34567776 9998   44 899999999999999987 43  457889999999999999999999999999999999


Q ss_pred             EcC
Q 022870          280 NLD  282 (291)
Q Consensus       280 ~~~  282 (291)
                      +..
T Consensus       222 ~~~  224 (345)
T 3fm0_A          222 RQY  224 (345)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            963

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.4e-28  Score=199.34  Aligned_cols=223  Identities=13%  Similarity=0.077  Sum_probs=129.6

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEE-----EEeeecCCcceEEEEEeec------CCCCeEEEEeC
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS-----SSWVHSAAHGIVSVATGPS------IGLNKVISQGR   84 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~~~~------~~~~~l~s~~~   84 (291)
                      .|...+....+.+++.+|++|+.|++|+|||..+++...     .+.+|...  |.+++|+|.      .++++|++|+.
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~--v~~v~~~p~~~~~~~~d~~~las~s~  164 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNF--VNDIDIADVYSADNRLAEQVIASVGD  164 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSC--EEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCc--eEEEEEccccccccCCCCCEEEEEEC
Confidence            344444445555677789999999999999998876543     24567755  999999872      15689999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      |++|+|||++++....  ......... ..                                       ++|+|++..++
T Consensus       165 D~tv~~Wd~~~~~~~~--~~~~~~~~v-~~---------------------------------------v~~~p~~~~~l  202 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPIL--AGYPLSSPG-IS---------------------------------------VQFRPSNPNQL  202 (393)
T ss_dssp             TSEEEEEEEETTEEEE--EEEECSSCE-EE---------------------------------------EEEETTEEEEE
T ss_pred             CCeEEEEECCCCceee--eecCCCCCc-EE---------------------------------------EEECCCCCceE
Confidence            9999999998764321  000011111 11                                       56999987666


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccC-------------CCCCCCCCcceeeeeEEEec-CCCCCCceEEEeecCC
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCG-------------GSPNFSSKGRGMCMAVQAYL-PSKSQGFVNVLAGYED  230 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~l~~g~~d  230 (291)
                      + +|+.|+.|++||+++++...........             ............+.++. |. |+   |+ .|++++.|
T Consensus       203 ~-~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~-~~~~d---g~-~l~s~s~d  276 (393)
T 4gq1_A          203 I-VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR-WIGSD---GS-GILAMCKS  276 (393)
T ss_dssp             E-EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE-EETTT---TC-EEEEECTT
T ss_pred             E-ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee-eecCC---CC-EEEEEeCC
Confidence            6 5777999999999987655433210000             00000011223455565 65 55   55 89999999


Q ss_pred             CcEEEEEccCCCCceeeccccccceeEEEee--------------------cCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSID--------------------ESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~--------------------~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      +.+++||+.. ++....+..|...+..+.+.                    .++.++++|+.||.|++||+++++....
T Consensus       277 ~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~  354 (393)
T 4gq1_A          277 GAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI  354 (393)
T ss_dssp             SEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE
T ss_pred             CCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence            9999999987 66555555555444443332                    2455678899999999999999877654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=6.3e-27  Score=192.11  Aligned_cols=254  Identities=8%  Similarity=0.015  Sum_probs=183.6

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEE-----eeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS-----WVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      .+..+..+ ..+.+++|+|++.++++++.|+.|++||+.+++....+     ..|.  ..|.+++|+|  ++.++++++.
T Consensus       115 ~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~~s~~~  189 (433)
T 3bws_A          115 FISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL--GFVETISIPE--HNELWVSQMQ  189 (433)
T ss_dssp             EEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC--CEEEEEEEGG--GTEEEEEEGG
T ss_pred             EEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC--CceeEEEEcC--CCEEEEEECC
Confidence            34445544 44669999998888889999999999999999887643     2444  4599999999  8899999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC---cccCCCCC
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGP  161 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  161 (291)
                      |+.|++||+++++...  .+..+........+++............+....|++........ +..+..   ++|+|+++
T Consensus       190 d~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~g~  266 (433)
T 3bws_A          190 ANAVHVFDLKTLAYKA--TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK-TDKIGLPRGLLLSKDGK  266 (433)
T ss_dssp             GTEEEEEETTTCCEEE--EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-CCCCSEEEEEEECTTSS
T ss_pred             CCEEEEEECCCceEEE--EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE-ecCCCCceEEEEcCCCC
Confidence            9999999998876533  22222334444455544433333333456677778766554332 222222   89999998


Q ss_pred             cEEEEecC------CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870          162 KYMAVAGE------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (291)
Q Consensus       162 ~~~~~~g~------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (291)
                      .+++++..      .|+.|++||+++++....+.             ....+..+. |+|+   ++.++++++.|+.|++
T Consensus       267 ~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-------------~~~~~~~~~-~~~~---g~~l~~~~~~~~~v~v  329 (433)
T 3bws_A          267 ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-------------PPGNKRHIV-SGNT---ENKIYVSDMCCSKIEV  329 (433)
T ss_dssp             EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-------------EEECEEEEE-ECSS---TTEEEEEETTTTEEEE
T ss_pred             EEEEEECCCCccccCCCeEEEEECCCCcEEeecc-------------CCCCcceEE-ECCC---CCEEEEEecCCCEEEE
Confidence            77653321      47899999999988776664             133456676 9998   4436778899999999


Q ss_pred             EEccCCCCceeeccccccceeEEEeecCCCeeEEecC---------------CCeEEEEEcCCCceeeee
Q 022870          236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---------------DQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       236 wd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---------------dg~i~vw~~~~~~~~~~~  290 (291)
                      ||+++ ++.+..+. +...+.+++|+|++++|++++.               ||.|++||+.+++.+..+
T Consensus       330 ~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          330 YDLKE-KKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             EETTT-TEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             EECCC-CcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence            99997 77776665 6778999999999998887776               579999999998877653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=4.8e-26  Score=182.04  Aligned_cols=232  Identities=9%  Similarity=0.036  Sum_probs=166.1

Q ss_pred             ceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC-C
Q 022870           20 SVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG-G   97 (291)
Q Consensus        20 ~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~   97 (291)
                      .+..+++.++++.+ ++|+.|++|++||..+++++..+. +.  .+|.+++|++  +  .++++ .|+.|++||+.+. +
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~--~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~  131 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VD--APVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWK  131 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CS--SCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCC
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CC--CceEEEEEcC--C--EEEEE-EcCEEEEEECCCCce
Confidence            57888999887777 578888999999999999998887 44  4599999998  4  44444 4789999999987 5


Q ss_pred             CCCCCccccccceEEEEEeecccCcccee-ccCCCCceeeecccCcc--------------c-cccCCCCCC----cccC
Q 022870           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGET--------------V-DTDSLCDSK----DDVP  157 (291)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~----~~~~  157 (291)
                      ...    .+.. ....+.+++  ...... ....+...+|++.....              . ...+.+|..    ++|+
T Consensus       132 ~~~----~~~~-~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s  204 (355)
T 3vu4_A          132 RIT----DDIR-FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN  204 (355)
T ss_dssp             BSS----CCEE-EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC
T ss_pred             eeE----Eecc-CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC
Confidence            433    2222 333333433  112222 34556777888876431              1 345667766    8999


Q ss_pred             CCCCcEEEEecCCcCe-EEEEeCCCcceeeEecccccCCCCC-CCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870          158 AEGPKYMAVAGEQLSE-VEIWDLNTAERCTRLHQNSCGGSPN-FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (291)
Q Consensus       158 ~~~~~~~~~~g~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (291)
                      |++..++  +|+.|++ |++||+++++++..+..       + |    ...+.+++ |+|+   |+ +|++|+.|+.|++
T Consensus       205 ~~g~~l~--s~s~d~~~v~iwd~~~~~~~~~~~~-------g~h----~~~v~~~~-~s~~---~~-~l~s~s~d~~v~i  266 (355)
T 3vu4_A          205 RKSDMVA--TCSQDGTIIRVFKTEDGVLVREFRR-------GLD----RADVVDMK-WSTD---GS-KLAVVSDKWTLHV  266 (355)
T ss_dssp             TTSSEEE--EEETTCSEEEEEETTTCCEEEEEEC-------TTC----CSCEEEEE-ECTT---SC-EEEEEETTCEEEE
T ss_pred             CCCCEEE--EEeCCCCEEEEEECCCCcEEEEEEc-------CCC----CCcEEEEE-ECCC---CC-EEEEEECCCEEEE
Confidence            9997554  6777998 99999999999988873       2 4    45678887 9998   44 9999999999999


Q ss_pred             EEccCCCC-ceeecc---------------------ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          236 WDIRNPGI-PLTAMK---------------------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       236 wd~~~~~~-~~~~~~---------------------~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      ||++.... ....+.                     .+......++|++++++|++++.||.+++|++..+
T Consensus       267 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          267 FEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             EESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             EEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence            99976321 111111                     11223477999999999999999999999998654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=2.3e-26  Score=184.55  Aligned_cols=249  Identities=9%  Similarity=0.034  Sum_probs=166.3

Q ss_pred             ccceeEEEEcCCCCEEEEecCC-------CeEEEEeCCCCe--------EEEE--EeeecCCcceEEEEEeecCCCCeEE
Q 022870           18 RASVTDVCFHQTKPILFAGTTG-------GELRIWDTVQHR--------TVSS--SWVHSAAHGIVSVATGPSIGLNKVI   80 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~d-------g~v~iwd~~~~~--------~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~   80 (291)
                      .-||++++|+|++++|++|+.|       +.|++|++..+.        ....  +..|.  ..|.++++.+    +.++
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~--~~v~s~~~~~----~~~~   87 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDND--DSPTAIDASK----GIIL   87 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTS--CCCCEEEEET----TEEE
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCC--CceEEEEeCC----CEEE
Confidence            4589999999999999998754       369999987542        1222  33344  4488887755    5555


Q ss_pred             EE-----------eCCCeEEEEECCCCCCCCCCcccc-------ccceEEEEEeecccCccceecc-CCCCceeeecccC
Q 022870           81 SQ-----------GRDGTVKCWDIENGGLSSNPSLTI-------KTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVG  141 (291)
Q Consensus        81 s~-----------~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  141 (291)
                      +|           +.|+.+++|++.............       .........+++.......+.. ......+|++...
T Consensus        88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~  167 (365)
T 4h5i_A           88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL  167 (365)
T ss_dssp             EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred             EEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence            54           457889999987653211100000       1112334455555444333222 3456778888776


Q ss_pred             ccccccCCCCCC--cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCC
Q 022870          142 ETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (291)
Q Consensus       142 ~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  219 (291)
                      .........+.-  ++|+|+|..++  +++ ++.+++|+..+++.+......      +|    ...+.++. |+|+   
T Consensus       168 ~~~~~~~~~~~V~~v~fspdg~~l~--s~s-~~~~~~~~~~~~~~~~~~~~~------~~----~~~v~~v~-fspd---  230 (365)
T 4h5i_A          168 TEKFEIETRGEVKDLHFSTDGKVVA--YIT-GSSLEVISTVTGSCIARKTDF------DK----NWSLSKIN-FIAD---  230 (365)
T ss_dssp             EEEEEEECSSCCCEEEECTTSSEEE--EEC-SSCEEEEETTTCCEEEEECCC------CT----TEEEEEEE-EEET---
T ss_pred             cEEEEeCCCCceEEEEEccCCceEE--ecc-ceeEEEEEeccCcceeeeecC------CC----CCCEEEEE-EcCC---
Confidence            654432211111  99999997554  455 466788888877765544321      23    45677887 9998   


Q ss_pred             CceEEEeecCCC----cEEEEEccCCCC---ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          220 GFVNVLAGYEDG----SILVWDIRNPGI---PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       220 g~~~l~~g~~dg----~i~vwd~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +. ++++++.|+    .+++||+.....   ....+.+|...|++++|+|+|++||+|+.|+.|+|||++++++++++
T Consensus       231 g~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~  307 (365)
T 4h5i_A          231 DT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF  307 (365)
T ss_dssp             TE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CC-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence            44 888888776    688999876222   23457789999999999999999999999999999999999988764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=1.5e-26  Score=183.75  Aligned_cols=221  Identities=14%  Similarity=0.171  Sum_probs=155.7

Q ss_pred             CCCeEEEEEeeecCCcceEEEEEeecCC-CCeEEEEeCCCeEEEEECCCCCCCCC-Ccccc--ccceEEEEEeecccCcc
Q 022870           48 VQHRTVSSSWVHSAAHGIVSVATGPSIG-LNKVISQGRDGTVKCWDIENGGLSSN-PSLTI--KTNSYHFCKLSLVKEPY  123 (291)
Q Consensus        48 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~  123 (291)
                      ++.++..++++|.+.  |++|+|+|  + +++|+||+.|++|++||+.+.+.... +...+  +........+++.....
T Consensus        26 ~~~~l~~tL~GH~~~--V~~v~~sp--~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l  101 (340)
T 4aow_A           26 EQMTLRGTLKGHNGW--VTQIATTP--QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA  101 (340)
T ss_dssp             CEEEEEEEECCCSSC--EEEEEECT--TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CceEEEEEECCccCC--EEEEEEeC--CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEE
Confidence            334566779999865  99999999  6 57999999999999999987654221 11122  23344444444433222


Q ss_pred             ceeccCCCCceeeecccCccccccCCCCCC---cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCC
Q 022870          124 ANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS  200 (291)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  200 (291)
                       ......+....++................   ..+++++..++  +|+.|+.+++||+...........       +| 
T Consensus       102 -~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--s~s~d~~~~~~d~~~~~~~~~~~~-------~~-  170 (340)
T 4aow_A          102 -LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV--SGSRDKTIKLWNTLGVCKYTVQDE-------SH-  170 (340)
T ss_dssp             -EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEE--EEETTSCEEEECTTSCEEEEECSS-------SC-
T ss_pred             -EEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccce--eecCCCeEEEEEeCCCceEEEEec-------cc-
Confidence             22223344455555554433333222222   67788887655  677799999999987654433321       44 


Q ss_pred             CCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                         ...+..+. |+++.. .. ++++++.|+.|++||+++ .+.+..+.+|.+.|++++|+|++++|++|+.||.|++||
T Consensus       171 ---~~~v~~~~-~~~~~~-~~-~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd  243 (340)
T 4aow_A          171 ---SEWVSCVR-FSPNSS-NP-IIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD  243 (340)
T ss_dssp             ---SSCEEEEE-ECSCSS-SC-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             ---cCcccceE-EccCCC-Cc-EEEEEcCCCEEEEEECCC-CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence               33455665 888743 33 789999999999999998 888899999999999999999999999999999999999


Q ss_pred             cCCCceeeee
Q 022870          281 LDHSTVSHCV  290 (291)
Q Consensus       281 ~~~~~~~~~~  290 (291)
                      +++.+.++.+
T Consensus       244 ~~~~~~~~~~  253 (340)
T 4aow_A          244 LNEGKHLYTL  253 (340)
T ss_dssp             TTTTEEEEEE
T ss_pred             eccCceeeee
Confidence            9998877653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.95  E-value=9.6e-27  Score=183.22  Aligned_cols=211  Identities=16%  Similarity=0.135  Sum_probs=145.1

Q ss_pred             ceEEecCCccceeEEEEcC--CCCEEEEecCCCeEEEEeCCCC--eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870           10 PVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      ++.++++|.++|++++|++  ++++|++|+.|++|++||++++  +....+..|...  |.+++|+|..++.+|++|+.|
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~--V~~v~~~p~~~g~~lasgs~D  126 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS--VNSVCWAPHDYGLILACGSSD  126 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC--CCEEEECCTTTCSCEEEECSS
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc--eEEEEECCCCCCcEEEEEcCC
Confidence            4678999999999999986  4889999999999999999876  456667778754  999999992227899999999


Q ss_pred             CeEEEEECCCCCCCC-CCccccccceEEEEEeecccC----------------ccceeccCCCCceeeecccCc--cccc
Q 022870           86 GTVKCWDIENGGLSS-NPSLTIKTNSYHFCKLSLVKE----------------PYANAKQANEPKDCYEREVGE--TVDT  146 (291)
Q Consensus        86 g~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~--~~~~  146 (291)
                      ++|++||++...... ......+........+.+...                .............+|++....  ....
T Consensus       127 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  206 (316)
T 3bg1_A          127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQ  206 (316)
T ss_dssp             SCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEE
T ss_pred             CCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceee
Confidence            999999998653110 001111222222222222210                112223344567778875432  2344


Q ss_pred             cCCCCCC----cccCCCC---CcEEEEecCCcCeEEEEeCCCcc----eeeEecccccCCCCCCCCCcceeeeeEEEecC
Q 022870          147 DSLCDSK----DDVPAEG---PKYMAVAGEQLSEVEIWDLNTAE----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (291)
Q Consensus       147 ~~~~~~~----~~~~~~~---~~~~~~~g~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  215 (291)
                      .+.+|..    ++|+|++   ..+++ +++.|++|++||+++..    ....+.        .|    ...+.+++ |+|
T Consensus       207 ~l~~h~~~V~~v~~sp~~~~~~~~la-s~s~D~~v~iw~~~~~~~~~~~~~~~~--------~~----~~~v~~v~-~sp  272 (316)
T 3bg1_A          207 KLEAHSDWVRDVAWAPSIGLPTSTIA-SCSQDGRVFIWTCDDASSNTWSPKLLH--------KF----NDVVWHVS-WSI  272 (316)
T ss_dssp             CCBCCSSCEEEEECCCCSSCSCCEEE-EEETTCEEEEEECSSTTCCCCBCCEEE--------EC----SSCEEEEE-ECT
T ss_pred             ecccCCCceEEEEecCCCCCCCceEE-EEcCCCeEEEEEccCccccchhhhhhh--------cC----CCcEEEEE-EcC
Confidence            5667766    8999986   23454 67779999999998631    112222        33    34678887 999


Q ss_pred             CCCCCceEEEeecCCCcEEEEEccC
Q 022870          216 SKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       216 ~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      +   ++ +|++|+.||.|++|+...
T Consensus       273 ~---g~-~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          273 T---AN-ILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             T---TC-CEEEEESSSCEEEEEECT
T ss_pred             C---CC-EEEEEcCCCeEEEEEECC
Confidence            8   44 899999999999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.1e-25  Score=182.35  Aligned_cols=231  Identities=11%  Similarity=0.089  Sum_probs=171.0

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeE-EEEeCCCeEEEEECCCCCCCCCCccccccc
Q 022870           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (291)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  109 (291)
                      .++++++.|+.|++||+.+++.+..+..|.   .+.+++|+|  +++++ ++++.|+.|++||+.+++...  .+.... 
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~--~~~~~~-   74 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIA--TVPAGS-   74 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEE--EEECSS-
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC---CcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEE--EEECCC-
Confidence            467899999999999999999998887663   389999999  88876 677799999999998876543  222222 


Q ss_pred             eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC---cccCCCCCcEEEEecCCcCeEEEEeCCCcceee
Q 022870          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT  186 (291)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~  186 (291)
                      ......+++................+|++.......... .+..   ++|+|+++.+++ +++.|+.|++||+++++.+.
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~-~~~~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYV-TNNGDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEE-EETTTTEEEEEETTTTEEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEE-EeCCCCEEEEEECCCCcEEE
Confidence            334444444443333333344667778877665433322 2223   899999987655 56678999999999998888


Q ss_pred             EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCe
Q 022870          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG  266 (291)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  266 (291)
                      .+.        .+     ..+..+. |+|+   ++.++++++.++.|++||+++ ++.+..+. +...+.+++|+|++++
T Consensus       153 ~~~--------~~-----~~~~~~~-~~~d---g~~l~~~~~~~~~v~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~g~~  213 (391)
T 1l0q_A          153 TVS--------VG-----RSPKGIA-VTPD---GTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEGTK  213 (391)
T ss_dssp             EEE--------CC-----SSEEEEE-ECTT---SSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTSSE
T ss_pred             EEe--------cC-----CCcceEE-ECCC---CCEEEEEeCCCCEEEEEECCC-CeEEEEEe-cCCCccceEECCCCCE
Confidence            776        32     1235665 9998   442457888999999999998 66666665 4668899999999999


Q ss_pred             eEEec---CCCeEEEEEcCCCceeeee
Q 022870          267 GISGG---ADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       267 l~s~s---~dg~i~vw~~~~~~~~~~~  290 (291)
                      |++++   .++.|++||+++++.+..+
T Consensus       214 l~~~~~~~~~~~v~~~d~~~~~~~~~~  240 (391)
T 1l0q_A          214 AYVTNVDKYFNTVSMIDTGTNKITARI  240 (391)
T ss_dssp             EEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             EEEEecCcCCCcEEEEECCCCeEEEEE
Confidence            98887   6899999999998876543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=2.5e-26  Score=182.76  Aligned_cols=216  Identities=13%  Similarity=0.176  Sum_probs=148.0

Q ss_pred             CceEEecCCccceeEEEEcC--CCCEEEEecCCCeEEEEeCCCC---------eEEEEEeeecCCcceEEEEEeecCC--
Q 022870            9 DPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQH---------RTVSSSWVHSAAHGIVSVATGPSIG--   75 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~--   75 (291)
                      ++...+.+|...|++++|+|  ++.+|++|+.||.|++||+.++         +.+..+..|...  |.+++|+|  +  
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~  123 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGS--LYSVKFAP--AHL  123 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSC--EEEEEECC--GGG
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCc--eeEEEEcC--CCC
Confidence            45778889999999999999  6999999999999999999876         567778778755  99999999  7  


Q ss_pred             CCeEEEEeCCCeEEEEECCCCCCCCCCccc-----------cccceEEEEEeeccc-Ccc-ceeccCCCCceeeecccCc
Q 022870           76 LNKVISQGRDGTVKCWDIENGGLSSNPSLT-----------IKTNSYHFCKLSLVK-EPY-ANAKQANEPKDCYEREVGE  142 (291)
Q Consensus        76 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~  142 (291)
                      +.+|++++.||.|++||+++.+........           ..........+.+.. ... ............+......
T Consensus       124 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~  203 (351)
T 3f3f_A          124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK  203 (351)
T ss_dssp             CSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC
T ss_pred             CcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc
Confidence            899999999999999999988754421100           011112222222220 011 1111222222222222222


Q ss_pred             -cccccCCCCCC----cccCCCCC---cEEEEecCCcCeEEEEeCCCc--------------------------------
Q 022870          143 -TVDTDSLCDSK----DDVPAEGP---KYMAVAGEQLSEVEIWDLNTA--------------------------------  182 (291)
Q Consensus       143 -~~~~~~~~~~~----~~~~~~~~---~~~~~~g~~d~~i~~wd~~~~--------------------------------  182 (291)
                       .....+.+|..    ++|+|++.   .+++ +|+.||.|++||++.+                                
T Consensus       204 ~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (351)
T 3f3f_A          204 LHVAAKLPGHKSLIRSISWAPSIGRWYQLIA-TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS  282 (351)
T ss_dssp             EEEEEECCCCCSCEEEEEECCCSSCSSEEEE-EEETTSCEEEEEEEECC-------------------------------
T ss_pred             eeeeeecCCCCcceeEEEECCCCCCcceEEE-EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccc
Confidence             22445556655    89999984   3444 6677999999999875                                


Q ss_pred             --------------ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870          183 --------------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (291)
Q Consensus       183 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (291)
                                    +.+..+.        +|    ...+.++. |+|+   ++ +|++|+.||.|++||+.+ ++.+..
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~--------~h----~~~v~~~~-~s~~---~~-~l~s~~~dg~v~iw~~~~-~~~~~~  343 (351)
T 3f3f_A          283 NTEEKAELQSNLQVELLSEHD--------DH----NGEVWSVS-WNLT---GT-ILSSAGDDGKVRLWKATY-SNEFKC  343 (351)
T ss_dssp             --------CCSEEEEEEEEEC--------TT----SSCEEEEE-ECSS---SC-CEEEEETTSCEEEEEECT-TSCEEE
T ss_pred             ccceeeeecccccccEEEEEe--------cc----cccEEEEE-EcCC---CC-EEEEecCCCcEEEEecCc-Ccchhh
Confidence                          2333333        44    44678887 9998   44 899999999999999997 544433

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=1.6e-25  Score=183.59  Aligned_cols=244  Identities=11%  Similarity=0.130  Sum_probs=170.1

Q ss_pred             cceeEEEEcCCC----------CEEEEecC----CCeEEEEeCC--------------------------CCeE-EEEEe
Q 022870           19 ASVTDVCFHQTK----------PILFAGTT----GGELRIWDTV--------------------------QHRT-VSSSW   57 (291)
Q Consensus        19 ~~v~~l~~~~~~----------~~l~s~~~----dg~v~iwd~~--------------------------~~~~-~~~~~   57 (291)
                      -+..++.|.|+.          .+++.|+.    ...|.+.++.                          +++. .....
T Consensus        46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  125 (430)
T 2xyi_A           46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI  125 (430)
T ss_dssp             SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred             CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence            356788888854          35777654    3456666532                          1111 23344


Q ss_pred             eecCCcceEEEEEeecCC-CCeEEEEeCCCeEEEEECCCCCCC------CCCccccc--cceEEEEEeecccCccceecc
Q 022870           58 VHSAAHGIVSVATGPSIG-LNKVISQGRDGTVKCWDIENGGLS------SNPSLTIK--TNSYHFCKLSLVKEPYANAKQ  128 (291)
Q Consensus        58 ~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  128 (291)
                      .|..  +|.+++|+|  + +.+|++++.||.|++||+.+....      ..+...+.  ........+.+..........
T Consensus       126 ~h~~--~v~~l~~~p--~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          126 NHEG--EVNRARYMP--QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EESS--CCSEEEEET--TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             cCCC--cEEEEEECC--CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            5664  499999999  6 578999999999999999862110      11122222  222333334433332344455


Q ss_pred             CCCCceeeecccCccc------cccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCc---ceeeEecccccCC
Q 022870          129 ANEPKDCYEREVGETV------DTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGG  195 (291)
Q Consensus       129 ~~~~~~~~~~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~---~~~~~~~~~~~~~  195 (291)
                      ..+...+|++......      ...+.+|..    ++|+|++..+++ +++.|+.|++||++++   +.+..+.      
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~-s~~~dg~i~i~d~~~~~~~~~~~~~~------  274 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG-SVADDQKLMIWDTRNNNTSKPSHTVD------  274 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEE-EEETTSEEEEEETTCSCSSSCSEEEE------
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEE-EEeCCCeEEEEECCCCCCCcceeEee------
Confidence            5677888888763221      233445655    899997777776 4556999999999987   4555555      


Q ss_pred             CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCC-eeEEecCCC
Q 022870          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQ  274 (291)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg  274 (291)
                        .|    ...+.++. |+|+   +..++++|+.||.|++||+++...++..+..|...|++++|+|++. +|++++.||
T Consensus       275 --~~----~~~v~~i~-~~p~---~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~  344 (430)
T 2xyi_A          275 --AH----TAEVNCLS-FNPY---SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR  344 (430)
T ss_dssp             --CC----SSCEEEEE-ECSS---CTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             --cC----CCCeEEEE-eCCC---CCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence              44    34577787 9998   3337999999999999999986778899999999999999999985 689999999


Q ss_pred             eEEEEEcCC
Q 022870          275 KIVLYNLDH  283 (291)
Q Consensus       275 ~i~vw~~~~  283 (291)
                      .|++||++.
T Consensus       345 ~i~iwd~~~  353 (430)
T 2xyi_A          345 RLHVWDLSK  353 (430)
T ss_dssp             CCEEEEGGG
T ss_pred             cEEEEeCCC
Confidence            999999987

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=2.4e-25  Score=181.02  Aligned_cols=249  Identities=13%  Similarity=0.094  Sum_probs=149.4

Q ss_pred             cCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC-CCCeEEEEeCCCeEEEEE
Q 022870           15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        15 ~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd   92 (291)
                      .+|...|++++|+| ++.+|++++.||.|++||+.+++....+. +.  ..+.++.++|.. ++.++++++.||.|++||
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FE--ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CS--SCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CC--CceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            36999999999999 78899999999999999999999888776 44  449999999831 234899999999999999


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccC---------------CCCCC----
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS---------------LCDSK----  153 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~----  153 (291)
                      +++++...  .+..+........+.+............+...+|+++........+               ..|..    
T Consensus       173 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  250 (408)
T 4a11_B          173 LKSGSCSH--ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG  250 (408)
T ss_dssp             SSSSCCCE--EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred             CCCcceee--eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence            99876543  2333344455555555444334455566778888886554222211               33444    


Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEeccccc---------------------------------------C
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC---------------------------------------G  194 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~---------------------------------------~  194 (291)
                      ++|+|++..++  +++.|+.|++||+++++....+.....                                       .
T Consensus       251 ~~~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~  328 (408)
T 4a11_B          251 LCFTSDGLHLL--TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT  328 (408)
T ss_dssp             EEECTTSSEEE--EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred             EEEcCCCCEEE--EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence            89999987655  566689999999987654332211000                                       0


Q ss_pred             CCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeec-CCCeeEEecCC
Q 022870          195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGAD  273 (291)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d  273 (291)
                      ...+|    ...+.++. |+|+   ++ +|++|+.||.|++||+++ .+++.....+...   ..+++ ....+.+.+.|
T Consensus       329 ~~~~~----~~~v~~~~-~s~~---~~-~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  395 (408)
T 4a11_B          329 MLKGH----YKTVDCCV-FQSN---FQ-ELYSGSRDCNILAWVPSL-YEPVPDDDETTTK---SQLNPAFEDAWSSSDEE  395 (408)
T ss_dssp             EECCC----SSCEEEEE-EETT---TT-EEEEEETTSCEEEEEECC----------------------------------
T ss_pred             eeccC----CCeEEEEE-EcCC---CC-EEEEECCCCeEEEEeCCC-CCccCCCCceEec---cccccccceeecccCcc
Confidence            00023    45677787 9998   44 899999999999999998 6666554433222   22322 33345677789


Q ss_pred             CeEEEEEcCC
Q 022870          274 QKIVLYNLDH  283 (291)
Q Consensus       274 g~i~vw~~~~  283 (291)
                      +.+++|+...
T Consensus       396 ~~~~~W~~~~  405 (408)
T 4a11_B          396 GGTSAWSHPQ  405 (408)
T ss_dssp             ----------
T ss_pred             CceeecCCcc
Confidence            9999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1e-25  Score=181.43  Aligned_cols=215  Identities=16%  Similarity=0.169  Sum_probs=154.5

Q ss_pred             CceEEecCCccceeEEEEcCC--CCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCC--CCeEEEE
Q 022870            9 DPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIG--LNKVISQ   82 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~   82 (291)
                      +++..+.+|..+|++++|+++  +.+|++|+.||.|++||+.+++  .+..+..|..  +|.+++|+|  +  +.+|+++
T Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~~~l~~~  121 (379)
T 3jrp_A           46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA--SVNSVQWAP--HEYGPLLLVA  121 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECC--GGGCSEEEEE
T ss_pred             eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc--ceEEEEeCC--CCCCCEEEEe
Confidence            456788999999999999976  8999999999999999999887  6666777774  499999999  7  8999999


Q ss_pred             eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecc------------cCccceeccCCCCceeeecccCcc---cccc
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV------------KEPYANAKQANEPKDCYEREVGET---VDTD  147 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  147 (291)
                      +.|+.|++||++............+........+.+.            ...........+...+|++.....   ....
T Consensus       122 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  201 (379)
T 3jrp_A          122 SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  201 (379)
T ss_dssp             ETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             cCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE
Confidence            9999999999998754332122233334444444442            123334445566788888765542   3344


Q ss_pred             CCCCCC----cccCCCC--CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCc
Q 022870          148 SLCDSK----DDVPAEG--PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (291)
Q Consensus       148 ~~~~~~----~~~~~~~--~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~  221 (291)
                      +.+|..    ++|+|++  ..+++ +++.||.|++||+++++.......       .........+.++. |+|+   |+
T Consensus       202 ~~~h~~~v~~~~~sp~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~~~-~s~~---g~  269 (379)
T 3jrp_A          202 LEGHSDWVRDVAWSPTVLLRSYLA-SVSQDRTCIIWTQDNEQGPWKKTL-------LKEEKFPDVLWRAS-WSLS---GN  269 (379)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEE-EEETTSCEEEEEESSTTSCCEEEE-------SSSSCCSSCEEEEE-ECSS---SC
T ss_pred             EecccCcEeEEEECCCCCCCCeEE-EEeCCCEEEEEeCCCCCccceeee-------eccccCCCcEEEEE-EcCC---CC
Confidence            556655    8999994  34454 566799999999998752211111       11111345678887 9998   44


Q ss_pred             eEEEeecCCCcEEEEEccC
Q 022870          222 VNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       222 ~~l~~g~~dg~i~vwd~~~  240 (291)
                       +|++++.||.|++||++.
T Consensus       270 -~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          270 -VLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             -CEEEEESSSSEEEEEEEE
T ss_pred             -EEEEecCCCcEEEEeCCC
Confidence             899999999999999984

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1.3e-26  Score=178.93  Aligned_cols=171  Identities=14%  Similarity=0.095  Sum_probs=120.9

Q ss_pred             CCceEEecCCccceeEEEEcC---CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC-CcceEEEEEeecCCCCeE----
Q 022870            8 PDPVAVLRGHRASVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKV----   79 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l----   79 (291)
                      ++.+..+.+|...++.++|++   ++.+|++|+.|++|+|||++++++++++..|.. ...+.+++|+|  +|.++    
T Consensus       168 G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp--dG~~lvs~s  245 (356)
T 2w18_A          168 GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE--MGLLFIVLS  245 (356)
T ss_dssp             SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE--TTEEEEEEC
T ss_pred             CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC--CCCEEEEec
Confidence            456777788888888888888   678999999999999999999999999986542 23588889999  88776    


Q ss_pred             --------EEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCC
Q 022870           80 --------ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD  151 (291)
Q Consensus        80 --------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (291)
                              ++|+.|++|++||..+++...  .+.          +..   +                          .+|
T Consensus       246 ~~~~~w~laSGs~D~tIklWd~~tgk~l~--v~~----------~~~---p--------------------------~Gh  284 (356)
T 2w18_A          246 HPCAKESESLRSPVFQLIVINPKTTLSVG--VML----------YCL---P--------------------------PGQ  284 (356)
T ss_dssp             ------------CCEEEEEEETTTTEEEE--EEE----------ECC---C--------------------------TTC
T ss_pred             cCCCcceeeccCCCcEEEEEECCCCEEEE--EEE----------eec---c--------------------------CCC
Confidence                    568889999999998876432  000          000   0                          000


Q ss_pred             CC--cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC
Q 022870          152 SK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (291)
Q Consensus       152 ~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (291)
                      ..  +..+.++. ++ ++|+.|++|+|||+++++++.+++        +|...   .+..++ |+|+   |+ +|++|+.
T Consensus       285 ~~~~lsg~~sg~-~l-ASgS~DgTIkIWDl~tGk~l~tL~--------gH~~~---vvs~va-fSPD---G~-~LaSGS~  346 (356)
T 2w18_A          285 AGRFLEGDVKDH-CA-AAILTSGTIAIWDLLLGQCTALLP--------PVSDQ---HWSFVK-WSGT---DS-HLLAGQK  346 (356)
T ss_dssp             CCCEEEEEEETT-EE-EEEETTSCEEEEETTTCSEEEEEC--------CC--C---CCCEEE-ECSS---SS-EEEEECT
T ss_pred             cceeEccccCCC-EE-EEEcCCCcEEEEECCCCcEEEEec--------CCCCC---eEEEEE-ECCC---CC-EEEEEEC
Confidence            00  00111222 33 378889999999999999999998        66432   223355 9998   44 9999999


Q ss_pred             CCcEEEEEcc
Q 022870          230 DGSILVWDIR  239 (291)
Q Consensus       230 dg~i~vwd~~  239 (291)
                      |++|+|||+.
T Consensus       347 D~TIklWd~~  356 (356)
T 2w18_A          347 DGNIFVYHYS  356 (356)
T ss_dssp             TSCEEEEEEC
T ss_pred             CCcEEEecCC
Confidence            9999999963

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.7e-24  Score=173.65  Aligned_cols=223  Identities=14%  Similarity=0.142  Sum_probs=157.8

Q ss_pred             EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCC
Q 022870           52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE  131 (291)
Q Consensus        52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (291)
                      ....+.+|...  |++++|+|  ++++|++++.||.|++||+.+++...  .+..+........+.+... ........+
T Consensus        24 ~~~~l~~h~~~--v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~-~l~s~~~dg   96 (369)
T 3zwl_B           24 KAIKLTGHERP--LTQVKYNK--EGDLLFSCSKDSSASVWYSLNGERLG--TLDGHTGTIWSIDVDCFTK-YCVTGSADY   96 (369)
T ss_dssp             EEEEEECCSSC--EEEEEECT--TSCEEEEEESSSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSS-EEEEEETTT
T ss_pred             ccEEEEEeece--EEEEEEcC--CCCEEEEEeCCCEEEEEeCCCchhhh--hhhhcCCcEEEEEEcCCCC-EEEEEeCCC
Confidence            44556777754  99999999  99999999999999999999876543  2233344444444544322 223334456


Q ss_pred             CceeeecccCccccccCCCCCC--cccCCCCCcEEEEecCCc-----CeEEEEeCCCcceeeEeccccc---CCCCCCCC
Q 022870          132 PKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQL-----SEVEIWDLNTAERCTRLHQNSC---GGSPNFSS  201 (291)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d-----~~i~~wd~~~~~~~~~~~~~~~---~~~~~~~~  201 (291)
                      ...+|++..............-  ++|+|++..++  +++.+     +.|++||++.......+.....   .....|..
T Consensus        97 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (369)
T 3zwl_B           97 SIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFL--AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG  174 (369)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEE--EEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred             eEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEE--EecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence            6788888776644433311111  89999998666  34446     9999999987653322221000   00002211


Q ss_pred             CcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                        ...+.++. |+|+   ++ +|++++.||.|++||+++....+..+..|...|.+++|+|++.+|++++.||.|++||+
T Consensus       175 --~~~~~~~~-~~~~---~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          175 --LDAATVAG-WSTK---GK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             --CCCEEEEE-ECGG---GC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             --ccceeEEE-EcCC---CC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence              12567776 9998   44 89999999999999999756788889999999999999999999999999999999999


Q ss_pred             CCCceeeee
Q 022870          282 DHSTVSHCV  290 (291)
Q Consensus       282 ~~~~~~~~~  290 (291)
                      ++++.+..+
T Consensus       248 ~~~~~~~~~  256 (369)
T 3zwl_B          248 STLQVLKKY  256 (369)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCceeeee
Confidence            998877653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=8e-25  Score=191.13  Aligned_cols=215  Identities=16%  Similarity=0.170  Sum_probs=155.6

Q ss_pred             CceEEecCCccceeEEEEcCC--CCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCC--CCeEEEE
Q 022870            9 DPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIG--LNKVISQ   82 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~   82 (291)
                      +++.++.+|.++|++++|+|+  +++|++|+.||.|++||+.+++  .+..+..|...  |.+++|+|  +  ++++++|
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~--V~~v~~sp--~~~~~~l~sg  119 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS--VNSVQWAP--HEYGPLLLVA  119 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC--EEEEEECC--GGGCSEEEEE
T ss_pred             ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC--eEEEEECC--CCCCCEEEEE
Confidence            457788999999999999987  9999999999999999999887  66667777744  99999999  7  8999999


Q ss_pred             eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecc------------cCccceeccCCCCceeeecccCc---ccccc
Q 022870           83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV------------KEPYANAKQANEPKDCYEREVGE---TVDTD  147 (291)
Q Consensus        83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  147 (291)
                      +.||.|++||+++...........+........+.+.            ...........+...+|+++...   .....
T Consensus       120 s~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~  199 (753)
T 3jro_A          120 SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  199 (753)
T ss_dssp             ETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             eCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence            9999999999998754332222233334444444442            12334444556677888887653   33344


Q ss_pred             CCCCCC----cccCCCC--CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCc
Q 022870          148 SLCDSK----DDVPAEG--PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (291)
Q Consensus       148 ~~~~~~----~~~~~~~--~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~  221 (291)
                      +.+|..    ++|+|++  ..+++ +|+.||.|++||+++++.......       .........+.++. |+|+   |+
T Consensus       200 ~~~h~~~V~~l~~sp~~~~~~~l~-s~s~Dg~I~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~l~-~spd---g~  267 (753)
T 3jro_A          200 LEGHSDWVRDVAWSPTVLLRSYLA-SVSQDRTCIIWTQDNEQGPWKKTL-------LKEEKFPDVLWRAS-WSLS---GN  267 (753)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEE-EEESSSCEEEEEESSSSSCCBCCB-------SSSSCCSSCCCCEE-ECTT---TC
T ss_pred             ecCCCCcEEEEEeccCCCCCCEEE-EEecCCEEEEecCCCCCCcceeEE-------eccCCCCCceEEEE-EcCC---CC
Confidence            556665    8999993  34444 566799999999998753211111       11112345677787 9998   44


Q ss_pred             eEEEeecCCCcEEEEEccC
Q 022870          222 VNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       222 ~~l~~g~~dg~i~vwd~~~  240 (291)
                       +|++|+.||.|++||++.
T Consensus       268 -~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          268 -VLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             -CEEEECSSSCEECCBCCS
T ss_pred             -EEEEEcCCCEEEEEecCC
Confidence             899999999999999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=2.7e-23  Score=169.39  Aligned_cols=207  Identities=11%  Similarity=0.012  Sum_probs=151.5

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCC---eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeC
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGG---ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR   84 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~   84 (291)
                      .....+.+|...|.+++|+|+|++|++++.|+   .|++||+.+++.. .+..+..  .+.+++|+|  +|++|+ +++.
T Consensus       169 ~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~--~~~~~~~sp--dg~~la~~~~~  243 (415)
T 2hqs_A          169 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPR--HNGAPAFSP--DGSKLAFALSK  243 (415)
T ss_dssp             CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSS--CEEEEEECT--TSSEEEEEECT
T ss_pred             CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCC--cccCEEEcC--CCCEEEEEEec
Confidence            45677888999999999999999999998875   9999999988775 4555654  499999999  999887 6666


Q ss_pred             CCe--EEEEECCCCCCCCCCccccccce-EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870           85 DGT--VKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (291)
Q Consensus        85 dg~--i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (291)
                      |+.  |++||+.+++..     .+.... ....                                       ++|+|+|+
T Consensus       244 ~g~~~i~~~d~~~~~~~-----~l~~~~~~~~~---------------------------------------~~~spdg~  279 (415)
T 2hqs_A          244 TGSLNLYVMDLASGQIR-----QVTDGRSNNTE---------------------------------------PTWFPDSQ  279 (415)
T ss_dssp             TSSCEEEEEETTTCCEE-----ECCCCSSCEEE---------------------------------------EEECTTSS
T ss_pred             CCCceEEEEECCCCCEE-----eCcCCCCcccc---------------------------------------eEECCCCC
Confidence            654  999999876531     111111 0001                                       55999998


Q ss_pred             cEEEEecCCcC--eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC---CcEEEE
Q 022870          162 KYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---GSILVW  236 (291)
Q Consensus       162 ~~~~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d---g~i~vw  236 (291)
                      .++++ +..++  .|++||+.+++.. .+.        .+    ...+..+. |+|+   |+ +|++++.+   +.|++|
T Consensus       280 ~l~~~-s~~~g~~~i~~~d~~~~~~~-~l~--------~~----~~~~~~~~-~spd---G~-~l~~~~~~~g~~~i~~~  340 (415)
T 2hqs_A          280 NLAFT-SDQAGRPQVYKVNINGGAPQ-RIT--------WE----GSQNQDAD-VSSD---GK-FMVMVSSNGGQQHIAKQ  340 (415)
T ss_dssp             EEEEE-ECTTSSCEEEEEETTSSCCE-ECC--------CS----SSEEEEEE-ECTT---SS-EEEEEEECSSCEEEEEE
T ss_pred             EEEEE-ECCCCCcEEEEEECCCCCEE-EEe--------cC----CCcccCeE-ECCC---CC-EEEEEECcCCceEEEEE
Confidence            77654 33344  6888899887643 333        22    23456676 9998   55 67666653   589999


Q ss_pred             EccCCCCceeeccccccceeEEEeecCCCeeEEecCCC---eEEEEEcCCCce
Q 022870          237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLDHSTV  286 (291)
Q Consensus       237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~vw~~~~~~~  286 (291)
                      |+.+ ++. ..+..|. .+.+++|+|+|++|++++.|+   .|++||++.+..
T Consensus       341 d~~~-~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~  390 (415)
T 2hqs_A          341 DLAT-GGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  390 (415)
T ss_dssp             ETTT-CCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             ECCC-CCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE
Confidence            9997 554 4565554 899999999999999888877   899999986543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=2.6e-23  Score=174.57  Aligned_cols=261  Identities=11%  Similarity=0.013  Sum_probs=177.3

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeC--CCCeEEEEEeeecCCcceEEEEEeecC--CCCeEEEE
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPSI--GLNKVISQ   82 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~   82 (291)
                      ..+++.++..+.. +.+++|+|+|++|++++.|++|++||+  .+++++.++..+   ..+..++|+|..  +|++++++
T Consensus       168 t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g---~~p~~va~sp~~~~dg~~l~v~  243 (543)
T 1nir_A          168 SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG---IEARSVESSKFKGYEDRYTIAG  243 (543)
T ss_dssp             TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC---SEEEEEEECCSTTCTTTEEEEE
T ss_pred             CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC---CCcceEEeCCCcCCCCCEEEEE
Confidence            3466777873333 899999999999999999999999999  888888888743   347999999711  46788887


Q ss_pred             e-CCCeEEEEECCCCCCCCCCcccccc----------c-eEEEEEeecccCccceeccCCCCceeeecccCcccc-ccCC
Q 022870           83 G-RDGTVKCWDIENGGLSSNPSLTIKT----------N-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD-TDSL  149 (291)
Q Consensus        83 ~-~dg~i~iwd~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  149 (291)
                      + .+++|.+||..+.+...  .+....          . ......++.............+.+..++........ ....
T Consensus       244 ~~~~~~v~v~D~~t~~~~~--~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~  321 (543)
T 1nir_A          244 AYWPPQFAIMDGETLEPKQ--IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG  321 (543)
T ss_dssp             EEESSEEEEEETTTCCEEE--EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred             EccCCeEEEEeccccccce--eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence            7 48999999998876543  111110          0 112222222222222223334455556655433221 1111


Q ss_pred             -C-CCC-cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe
Q 022870          150 -C-DSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (291)
Q Consensus       150 -~-~~~-~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (291)
                       + ... ++|+|+|+++++ ++..+++|.+||+.+++++..+....    ..|..  .+.  .+  ++|++  |+ ++++
T Consensus       322 ~~~~~~~~~~spdg~~l~v-a~~~~~~v~v~D~~tg~l~~~i~~g~----~ph~g--~g~--~~--~~p~~--g~-~~~s  387 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMT-AANNSNKVAVIDSKDRRLSALVDVGK----TPHPG--RGA--NF--VHPKY--GP-VWST  387 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEE-EEGGGTEEEEEETTTTEEEEEEECSS----SBCCT--TCE--EE--EETTT--EE-EEEE
T ss_pred             cCcCccCceECCCCCEEEE-EecCCCeEEEEECCCCeEEEeeccCC----CCCCC--CCc--cc--CCCCC--cc-EEEe
Confidence             1 111 899999987765 45557899999999999888776210    01211  111  11  45652  33 6777


Q ss_pred             ec-CCCcEEEEEccCC------CCceeeccccccceeEEEeecCCCeeEEec-------CCCeEEEEEcCCCcee
Q 022870          227 GY-EDGSILVWDIRNP------GIPLTAMKVHLEPVLCLSIDESCNGGISGG-------ADQKIVLYNLDHSTVS  287 (291)
Q Consensus       227 g~-~dg~i~vwd~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-------~dg~i~vw~~~~~~~~  287 (291)
                      +. .|++|.+||+.+.      .+.++.+.+|...+..++++|++++|++++       .+++|.|||+++++..
T Consensus       388 ~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          388 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             ccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            75 6899999999862      567888999988899999999999999987       2779999999998876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=3.1e-22  Score=158.43  Aligned_cols=253  Identities=7%  Similarity=0.027  Sum_probs=166.2

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecC-CCeEEEEeCCCCeE-EEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      ..+.+..+..+...+ +++|+|+|+++++++. ++.|.+||+.+++. ...+..+..+  ..+++|+|  ++++++++..
T Consensus        29 ~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~s~--dg~~l~~~~~  103 (331)
T 3u4y_A           29 TLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS--MADVDITP--DDQFAVTVTG  103 (331)
T ss_dssp             TCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC--CCCEEECT--TSSEEEECCC
T ss_pred             ccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC--ccceEECC--CCCEEEEecC
Confidence            345566666666677 9999999986665554 89999999998887 6666666533  55599999  9999986555


Q ss_pred             CC---eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCC-ceeeecccCccc----cccCCCCCC---
Q 022870           85 DG---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP-KDCYEREVGETV----DTDSLCDSK---  153 (291)
Q Consensus        85 dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~---  153 (291)
                      ++   .|.+||+.+++...  ..... .......+++.............. ...|++......    .........   
T Consensus       104 ~~~~~~i~v~d~~~~~~~~--~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~  180 (331)
T 3u4y_A          104 LNHPFNMQSYSFLKNKFIS--TIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFN  180 (331)
T ss_dssp             SSSSCEEEEEETTTTEEEE--EEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEE
T ss_pred             CCCcccEEEEECCCCCeEE--EEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccc
Confidence            53   89999998876533  12221 223444555554433333334345 666776543221    111111112   


Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcce---eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED  230 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d  230 (291)
                      ++|+|+|+.+++ ++..++.|++||+.+++.   +..+..        .     ..+..+. |+|+   |+.++++...+
T Consensus       181 ~~~spdg~~l~v-~~~~~~~v~v~d~~~~~~~~~~~~~~~--------~-----~~~~~~~-~spd---g~~l~v~~~~~  242 (331)
T 3u4y_A          181 ITFTPDGNFAFV-ANLIGNSIGILETQNPENITLLNAVGT--------N-----NLPGTIV-VSRD---GSTVYVLTEST  242 (331)
T ss_dssp             EEECTTSSEEEE-EETTTTEEEEEECSSTTSCEEEEEEEC--------S-----SCCCCEE-ECTT---SSEEEEECSSE
T ss_pred             eEECCCCCEEEE-EeCCCCeEEEEECCCCcccceeeeccC--------C-----CCCceEE-ECCC---CCEEEEEEcCC
Confidence            899999987665 455689999999999887   666652        1     2345565 9998   55244455568


Q ss_pred             CcEEEEEccCCCCc--eeecccc----ccc---eeEEEeecCCCeeEE-ecCCCeEEEEEcCCCce
Q 022870          231 GSILVWDIRNPGIP--LTAMKVH----LEP---VLCLSIDESCNGGIS-GGADQKIVLYNLDHSTV  286 (291)
Q Consensus       231 g~i~vwd~~~~~~~--~~~~~~h----~~~---v~~~~~~~~~~~l~s-~s~dg~i~vw~~~~~~~  286 (291)
                      +.|.+||+.+ ++.  +..+..+    ..+   ...++|+|++++|+. +..++.|.+||+.....
T Consensus       243 ~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          243 VDVFNFNQLS-GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             EEEEEEETTT-TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             CEEEEEECCC-CceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            8999999987 554  2222211    222   356899999998754 45567999999987664

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=3.6e-22  Score=155.12  Aligned_cols=209  Identities=13%  Similarity=0.120  Sum_probs=148.8

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC-CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe--CCCe
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG--RDGT   87 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~   87 (291)
                      ...+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+.. ..+.+++|+|  ++++|++++  .++.
T Consensus        34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~sp--dg~~l~~~~~~~~~~  109 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT-ICNNDHGISP--DGALYAISDKVEFGK  109 (297)
T ss_dssp             EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC-CBCSCCEECT--TSSEEEEEECTTTSS
T ss_pred             eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc-ccccceEECC--CCCEEEEEEeCCCCc
Confidence            445667899999999999999999986 78999999998 777665544421 4589999999  999999988  3345


Q ss_pred             EEEEEC--CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870           88 VKCWDI--ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (291)
Q Consensus        88 i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                      ..+|.+  .+++..     .+........                                       ++|+|+++.+++
T Consensus       110 ~~l~~~~~~~~~~~-----~~~~~~~~~~---------------------------------------~~~spdg~~l~~  145 (297)
T 2ojh_A          110 SAIYLLPSTGGTPR-----LMTKNLPSYW---------------------------------------HGWSPDGKSFTY  145 (297)
T ss_dssp             CEEEEEETTCCCCE-----ECCSSSSEEE---------------------------------------EEECTTSSEEEE
T ss_pred             ceEEEEECCCCceE-----EeecCCCccc---------------------------------------eEECCCCCEEEE
Confidence            555555  433211     1111111111                                       459999987765


Q ss_pred             EecCCcCeEEEEeCC--CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe-ecCCCcEEEEEccCCC
Q 022870          166 VAGEQLSEVEIWDLN--TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYEDGSILVWDIRNPG  242 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~~dg~i~vwd~~~~~  242 (291)
                       ++..++.+++|+++  +++ ...+.        .+    ...+..+. |+|+   |+ +|+. +..++.+++|++...+
T Consensus       146 -~~~~~~~~~l~~~~~~~~~-~~~~~--------~~----~~~~~~~~-~s~d---g~-~l~~~~~~~~~~~i~~~~~~~  206 (297)
T 2ojh_A          146 -CGIRDQVFDIYSMDIDSGV-ETRLT--------HG----EGRNDGPD-YSPD---GR-WIYFNSSRTGQMQIWRVRVDG  206 (297)
T ss_dssp             -EEEETTEEEEEEEETTTCC-EEECC--------CS----SSCEEEEE-ECTT---SS-EEEEEECTTSSCEEEEEETTS
T ss_pred             -EECCCCceEEEEEECCCCc-ceEcc--------cC----CCccccce-ECCC---CC-EEEEEecCCCCccEEEECCCC
Confidence             44457889999864  333 33333        22    23456676 9998   54 5554 4568999999987436


Q ss_pred             CceeeccccccceeEEEeecCCCeeEEecCC-----------CeEEEEEcCCCce
Q 022870          243 IPLTAMKVHLEPVLCLSIDESCNGGISGGAD-----------QKIVLYNLDHSTV  286 (291)
Q Consensus       243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----------g~i~vw~~~~~~~  286 (291)
                      ..+..+..|...+..++|+|++++|++++.+           +.|++||+++++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          207 SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            6777888888899999999999999888766           5799999998765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=5.7e-22  Score=166.46  Aligned_cols=209  Identities=12%  Similarity=0.013  Sum_probs=153.9

Q ss_pred             EEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC--CCCCCCCCC
Q 022870           25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI--ENGGLSSNP  102 (291)
Q Consensus        25 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~  102 (291)
                      +|+|++.++++++.|++|.+||..+++++.++..+.   .+..++|+|  ++++|++++.|++|.+||+  .+++...  
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~---~~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~--  216 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY---AVHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVA--  216 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST---TEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEE--
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc---ccceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEE--
Confidence            488999899999999999999999999999887543   289999999  9999999999999999999  5554322  


Q ss_pred             ccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCC----CCCcEEEEecCCcCeEEEEe
Q 022870          103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA----EGPKYMAVAGEQLSEVEIWD  178 (291)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~d~~i~~wd  178 (291)
                        ++........                                       ++|+|    +|+.+++ ++..++.|.+||
T Consensus       217 --~i~~g~~p~~---------------------------------------va~sp~~~~dg~~l~v-~~~~~~~v~v~D  254 (543)
T 1nir_A          217 --EIKIGIEARS---------------------------------------VESSKFKGYEDRYTIA-GAYWPPQFAIMD  254 (543)
T ss_dssp             --EEECCSEEEE---------------------------------------EEECCSTTCTTTEEEE-EEEESSEEEEEE
T ss_pred             --EEecCCCcce---------------------------------------EEeCCCcCCCCCEEEE-EEccCCeEEEEe
Confidence              2221111111                                       66999    9987664 454589999999


Q ss_pred             CCCcceeeEecccccCCC--CCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee-eccccccce
Q 022870          179 LNTAERCTRLHQNSCGGS--PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-AMKVHLEPV  255 (291)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~h~~~v  255 (291)
                      ..+++++..+........  .-|   ....+.++. ++|+   +..++++...++.|.+||+.+ .+.+. ....+...+
T Consensus       255 ~~t~~~~~~i~~~g~~~~~~~~~---~~~~v~~i~-~s~~---~~~~~vs~~~~g~i~vvd~~~-~~~l~~~~i~~~~~~  326 (543)
T 1nir_A          255 GETLEPKQIVSTRGMTVDTQTYH---PEPRVAAII-ASHE---HPEFIVNVKETGKVLLVNYKD-IDNLTVTSIGAAPFL  326 (543)
T ss_dssp             TTTCCEEEEEECCEECSSSCCEE---SCCCEEEEE-ECSS---SSEEEEEETTTTEEEEEECTT-SSSCEEEEEECCSSC
T ss_pred             ccccccceeecccCcccCccccc---cCCceEEEE-ECCC---CCEEEEEECCCCeEEEEEecC-CCcceeEEeccCcCc
Confidence            999998888762100000  001   112456676 9987   333888899999999999987 44333 122356778


Q ss_pred             eEEEeecCCCeeE-EecCCCeEEEEEcCCCceeeee
Q 022870          256 LCLSIDESCNGGI-SGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       256 ~~~~~~~~~~~l~-s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      .+++|+|++++|+ ++..+++|.+||+.+++++.++
T Consensus       327 ~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i  362 (543)
T 1nir_A          327 HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV  362 (543)
T ss_dssp             CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEee
Confidence            8999999999765 4556899999999999987654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=1.1e-20  Score=150.75  Aligned_cols=250  Identities=11%  Similarity=0.075  Sum_probs=169.5

Q ss_pred             CccceeEEEEcCCCCEEEEecC-------CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeE
Q 022870           17 HRASVTDVCFHQTKPILFAGTT-------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTV   88 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i   88 (291)
                      ....+..++|+|+++++++++.       ++.|.+||..+++.+..+....   .+..++|+|  ++++++ +...++.|
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~--dg~~l~v~~~~~~~v  113 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL---KPFGATINN--TTQTLWFGNTVNSAV  113 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS---CCCSEEEET--TTTEEEEEETTTTEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC---CcceEEECC--CCCEEEEEecCCCEE
Confidence            4567889999999998887764       5689999999999888887542   378899999  888555 55668999


Q ss_pred             EEEECCCCCCCCCCccccccc---------eEEEEEeecccCccceec-cCCCCceeeecccCccccccC-CCCCC--cc
Q 022870           89 KCWDIENGGLSSNPSLTIKTN---------SYHFCKLSLVKEPYANAK-QANEPKDCYEREVGETVDTDS-LCDSK--DD  155 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~  155 (291)
                      .+||..+++...  .......         ......+++......... ........++........... .+...  ++
T Consensus       114 ~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  191 (353)
T 3vgz_A          114 TAIDAKTGEVKG--RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA  191 (353)
T ss_dssp             EEEETTTCCEEE--EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred             EEEeCCCCeeEE--EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence            999999886533  1122111         123344444433222222 123445666666555433322 22212  89


Q ss_pred             cCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (291)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (291)
                      |+|+++.+++  ++.++.|.+||+.+++....+..        ...........+. |+|+   |+.++++...++.|.+
T Consensus       192 ~s~dg~~l~~--~~~~~~i~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~-~s~d---g~~l~~~~~~~~~v~~  257 (353)
T 3vgz_A          192 LDSEGKRLYT--TNADGELITIDTADNKILSRKKL--------LDDGKEHFFINIS-LDTA---RQRAFITDSKAAEVLV  257 (353)
T ss_dssp             EETTTTEEEE--ECTTSEEEEEETTTTEEEEEEEC--------CCSSSCCCEEEEE-EETT---TTEEEEEESSSSEEEE
T ss_pred             ECCCCCEEEE--EcCCCeEEEEECCCCeEEEEEEc--------CCCCCCcccceEE-ECCC---CCEEEEEeCCCCEEEE
Confidence            9999987765  33479999999999988877762        1111233456676 9998   4424455556699999


Q ss_pred             EEccCCCCceeeccccccceeEEEeecCCCee-EEecCCCeEEEEEcCCCceeeee
Q 022870          236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       236 wd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ||..+ ++.+..+....  ...++|+|+++++ ++...++.|.+||+++++.+..+
T Consensus       258 ~d~~~-~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~  310 (353)
T 3vgz_A          258 VDTRN-GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF  310 (353)
T ss_dssp             EETTT-CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCC-CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            99988 77777766533  3679999999965 45557999999999999887653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=8.2e-22  Score=160.66  Aligned_cols=210  Identities=11%  Similarity=0.066  Sum_probs=150.2

Q ss_pred             Cce--EEecCCccceeEEEEcC--------------CCCEEEEecCC------CeEEEEeCCCCeEEEEEeeecCCcceE
Q 022870            9 DPV--AVLRGHRASVTDVCFHQ--------------TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIV   66 (291)
Q Consensus         9 ~~~--~~l~~h~~~v~~l~~~~--------------~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~v~   66 (291)
                      +.+  ..+.+|...+..+++++              .+..++.++.+      ++|++||+. +.....+..|...  +.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~--v~  182 (415)
T 2hqs_A          106 TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQP--LM  182 (415)
T ss_dssp             CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSC--EE
T ss_pred             CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCc--ce
Confidence            444  45888998888888875              15566665554      799999987 4456677778754  99


Q ss_pred             EEEEeecCCCCeEEEEeCCC---eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc
Q 022870           67 SVATGPSIGLNKVISQGRDG---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET  143 (291)
Q Consensus        67 ~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (291)
                      +++|+|  +|++|++++.++   .|++||+++++...  +.... .. ...                             
T Consensus       183 ~~~~Sp--dg~~la~~s~~~~~~~i~~~d~~tg~~~~--l~~~~-~~-~~~-----------------------------  227 (415)
T 2hqs_A          183 SPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFP-RH-NGA-----------------------------  227 (415)
T ss_dssp             EEEECT--TSSEEEEEECTTSSCEEEEEETTTCCEEE--EECCS-SC-EEE-----------------------------
T ss_pred             eeEEcC--CCCEEEEEEecCCCcEEEEEECCCCcEEE--eecCC-Cc-ccC-----------------------------
Confidence            999999  999999999875   99999999875421  11111 00 001                             


Q ss_pred             ccccCCCCCCcccCCCCCcEEEEecCCc--CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCc
Q 022870          144 VDTDSLCDSKDDVPAEGPKYMAVAGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (291)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~  221 (291)
                                ++|+|+|+.++++ ++.+  ..|++||+++++. ..+.        .|    ...+.++. |+|+   |+
T Consensus       228 ----------~~~spdg~~la~~-~~~~g~~~i~~~d~~~~~~-~~l~--------~~----~~~~~~~~-~spd---g~  279 (415)
T 2hqs_A          228 ----------PAFSPDGSKLAFA-LSKTGSLNLYVMDLASGQI-RQVT--------DG----RSNNTEPT-WFPD---SQ  279 (415)
T ss_dssp             ----------EEECTTSSEEEEE-ECTTSSCEEEEEETTTCCE-EECC--------CC----SSCEEEEE-ECTT---SS
T ss_pred             ----------EEEcCCCCEEEEE-EecCCCceEEEEECCCCCE-EeCc--------CC----CCcccceE-ECCC---CC
Confidence                      5699999877653 4334  4599999998765 4444        33    23466676 9998   55


Q ss_pred             eEEEeecC-CC--cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC---CeEEEEEcCCCcee
Q 022870          222 VNVLAGYE-DG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTVS  287 (291)
Q Consensus       222 ~~l~~g~~-dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vw~~~~~~~~  287 (291)
                       +|++++. ++  .|++||+.+ ++ ...+..|...+.+++|+|+|++|++++.+   ..|++||+++++..
T Consensus       280 -~l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~  348 (415)
T 2hqs_A          280 -NLAFTSDQAGRPQVYKVNING-GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  348 (415)
T ss_dssp             -EEEEEECTTSSCEEEEEETTS-SC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred             -EEEEEECCCCCcEEEEEECCC-CC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence             6766665 45  677888886 44 44556677889999999999999888764   58999999988763

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=3.9e-21  Score=152.62  Aligned_cols=253  Identities=13%  Similarity=0.120  Sum_probs=153.8

Q ss_pred             CCccceeEEEEcCCCCEEEEecCC-CeEEEEeCC--CCeE--EEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CCeEE
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTG-GELRIWDTV--QHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVK   89 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~d-g~v~iwd~~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~   89 (291)
                      .|...+.+++|+|++++|++++.+ +.|++|++.  +++.  +..+..+   ..+..++|+|  ++++|++++. ++.|.
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~--dg~~l~~~~~~~~~i~  109 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP---GSLTHISTDH--QGQFVFVGSYNAGNVS  109 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS---SCCSEEEECT--TSSEEEEEETTTTEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC---CCCcEEEEcC--CCCEEEEEecCCCeEE
Confidence            477789999999999988888776 999999987  5543  3344433   2488999999  9887876654 88999


Q ss_pred             EEECCCCCCCCCCccccccc-eEEEEEeecccCccceeccCCCCceeeeccc-Cccc-----cccCCCCCC---cccCCC
Q 022870           90 CWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETV-----DTDSLCDSK---DDVPAE  159 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~---~~~~~~  159 (291)
                      +||+..+... ......... ......+++.................|++.. ....     .........   ++|+|+
T Consensus       110 ~~d~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd  188 (343)
T 1ri6_A          110 VTRLEDGLPV-GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  188 (343)
T ss_dssp             EEEEETTEEE-EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             EEECCCCccc-cccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC
Confidence            9999522110 001111111 1112223333222222222345566677765 3221     111111112   889999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCC--cce--eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNT--AER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (291)
                      ++.+++ ++..++.|.+||+..  ++.  ...+...    ..++.  ....+..+. |+|+   |+.+++++..++.|++
T Consensus       189 g~~l~~-~~~~~~~i~~~~~~~~~g~~~~~~~~~~~----~~~~~--~~~~~~~i~-~s~d---g~~l~v~~~~~~~i~v  257 (343)
T 1ri6_A          189 EQYAYC-VNELNSSVDVWELKDPHGNIECVQTLDMM----PENFS--DTRWAADIH-ITPD---GRHLYACDRTASLITV  257 (343)
T ss_dssp             SSEEEE-EETTTTEEEEEESSCTTSCCEEEEEEECS----CTTCC--SCCCEEEEE-ECTT---SSEEEEEETTTTEEEE
T ss_pred             CCEEEE-EeCCCCEEEEEEecCCCCcEEEEeecccc----Ccccc--ccCCccceE-ECCC---CCEEEEEecCCCEEEE
Confidence            987765 455689999999954  332  2222200    00111  122445666 9998   5434456678999999


Q ss_pred             EEccCC---CCceeeccccccceeEEEeecCCCeeEEec-CCCeEEEEEcC--CCce
Q 022870          236 WDIRNP---GIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLD--HSTV  286 (291)
Q Consensus       236 wd~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~~--~~~~  286 (291)
                      ||+...   .+.+..+..+.. +.+++|+|++++|++++ .++.|.+|+++  ++++
T Consensus       258 ~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          258 FSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             EEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence            999831   233444544444 89999999999887777 68999999554  5543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=3.6e-22  Score=163.36  Aligned_cols=203  Identities=14%  Similarity=0.094  Sum_probs=139.7

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCC-----------CeEE-----EEEeeecCCcceEEEEEeecCCCCeEE
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-----------HRTV-----SSSWVHSAAHGIVSVATGPSIGLNKVI   80 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-----------~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~   80 (291)
                      +...++.+++++++.++++++.|+ +++|+...           ....     ..+ .+.  .+|.+++|+|  ++++|+
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~v~~l~~sp--dg~~la  108 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMK--FPIHHLALSC--DNLTLS  108 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCS--SCEEEEEECT--TSCEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCC--CcccEEEEcC--CCCEEE
Confidence            345689999999999999999888 88987431           0111     111 122  4599999999  999999


Q ss_pred             ----EEeCCCeEEEEECCCCCC----CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC
Q 022870           81 ----SQGRDGTVKCWDIENGGL----SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS  152 (291)
Q Consensus        81 ----s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (291)
                          +++.|+.|++||+++...    ..++......                                       +.+|.
T Consensus       109 v~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~h~  149 (434)
T 2oit_A          109 ACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL---------------------------------------LKDAG  149 (434)
T ss_dssp             EEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC---------------------------------------CCSGG
T ss_pred             EEEeccCCCceEEEEEccccccCCcCCcceeeeeec---------------------------------------cCCCC
Confidence                788999999999876410    0000000000                                       00111


Q ss_pred             C----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec
Q 022870          153 K----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (291)
Q Consensus       153 ~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (291)
                      .    ++|+|++..+++ +++.||.|++||++++.......        +|    ...+.+++ |+|+   |+ +|++|+
T Consensus       150 ~~V~~v~~~p~~~~~la-s~s~Dg~v~iwD~~~~~~~~~~~--------~~----~~~v~~v~-wspd---g~-~lasgs  211 (434)
T 2oit_A          150 GMVIDMKWNPTVPSMVA-VCLADGSIAVLQVTETVKVCATL--------PS----TVAVTSVC-WSPK---GK-QLAVGK  211 (434)
T ss_dssp             GSEEEEEECSSCTTEEE-EEETTSCEEEEEESSSEEEEEEE--------CG----GGCEEEEE-ECTT---SS-CEEEEE
T ss_pred             CceEEEEECCCCCCEEE-EEECCCeEEEEEcCCCcceeecc--------CC----CCceeEEE-EcCC---CC-EEEEEc
Confidence            1    679998656666 56669999999999886655444        33    44677887 9998   44 899999


Q ss_pred             CCCcEEEEEccCCCCceeeccc-------cccceeEEEeecCCCeeEEe-cCCC------eEEEEEcCCC
Q 022870          229 EDGSILVWDIRNPGIPLTAMKV-------HLEPVLCLSIDESCNGGISG-GADQ------KIVLYNLDHS  284 (291)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~s~-s~dg------~i~vw~~~~~  284 (291)
                      .||.|++||++  ++....+..       |...|.+++|++++.++++. +.||      .+++|++++.
T Consensus       212 ~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          212 QNGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTSCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCCcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            99999999998  344444433       33489999999998877543 3343      3999999865

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=1.1e-20  Score=149.68  Aligned_cols=253  Identities=10%  Similarity=0.060  Sum_probs=168.6

Q ss_pred             CceEEecC-Ccc-ceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecC---CcceEEEEEeecCCCCeEEEE
Q 022870            9 DPVAVLRG-HRA-SVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSA---AHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus         9 ~~~~~l~~-h~~-~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      +.+..+.. +.. .+..++|+|+++++ +++..++.|.+||+.+++.+..+.....   ...+.+++|+|  ++++++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~   99 (337)
T 1pby_B           22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAIY   99 (337)
T ss_dssp             EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEEE
T ss_pred             cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC--CCCEEEEE
Confidence            44555552 222 58899999999765 5667789999999999988877664320   01367899999  98888888


Q ss_pred             e------------CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCC
Q 022870           83 G------------RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC  150 (291)
Q Consensus        83 ~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (291)
                      +            .++.|.+||+.+++...  ..... .......+++........   ......+++............
T Consensus       100 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~-~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~  173 (337)
T 1pby_B          100 ESPVRLELTHFEVQPTRVALYDAETLSRRK--AFEAP-RQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQ  173 (337)
T ss_dssp             EEEEEECSSCEEECCCEEEEEETTTTEEEE--EEECC-SSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEECST
T ss_pred             ecccccccccccccCceEEEEECCCCcEEE--EEeCC-CCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeeeecc
Confidence            6            57999999998765432  11111 111122233332222111   455666777665543322222


Q ss_pred             C--CCcccCCCCCcEEEEecCCcC-----------------------eEEEEeCCCcceeeEecccccCCCCCCCCCcce
Q 022870          151 D--SKDDVPAEGPKYMAVAGEQLS-----------------------EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRG  205 (291)
Q Consensus       151 ~--~~~~~~~~~~~~~~~~g~~d~-----------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (291)
                      .  ....|+|++..+++ ++..++                       .|.+||+.+++.. .+...      .+    ..
T Consensus       174 ~~~~~~~~s~dg~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~------~~----~~  241 (337)
T 1pby_B          174 SWEAETYAQPDVLAVWN-QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR------IM----DV  241 (337)
T ss_dssp             TTTTTTBCCCBCCCCCC-CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE------EC----SS
T ss_pred             ccCCCceeCCCccEEee-eccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC------CC----CC
Confidence            2  22789999987654 333333                       4689999988765 33210      11    22


Q ss_pred             eeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      ....+. |+|+   |+ +++++  ++.|++||+.+ ++.+..+.. ...+.+++|+|++++|++++.++.|++||+++++
T Consensus       242 ~~~~~~-~s~d---g~-~l~~~--~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          242 FYFSTA-VNPA---KT-RAFGA--YNVLESFDLEK-NASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             CEEEEE-ECTT---SS-EEEEE--ESEEEEEETTT-TEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             ceeeEE-ECCC---CC-EEEEe--CCeEEEEECCC-CcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence            345666 9998   44 67766  79999999988 777666654 3567899999999999988999999999999998


Q ss_pred             eeeee
Q 022870          286 VSHCV  290 (291)
Q Consensus       286 ~~~~~  290 (291)
                      .+..+
T Consensus       313 ~~~~~  317 (337)
T 1pby_B          313 KKGQV  317 (337)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=9.4e-21  Score=150.95  Aligned_cols=225  Identities=11%  Similarity=0.110  Sum_probs=143.9

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEec-CCCeEEEEeCCC-Ce--EEEEEeeecC-------CcceEEEEEeecCCCCeE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGT-TGGELRIWDTVQ-HR--TVSSSWVHSA-------AHGIVSVATGPSIGLNKV   79 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~-~~--~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l   79 (291)
                      +..+..|...+..++|+|+|++|++++ .++.|.+|++.. +.  .+..+.....       ...+.+++|+|  +++++
T Consensus        78 ~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~  155 (347)
T 3hfq_A           78 LNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLA  155 (347)
T ss_dssp             EEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEE
T ss_pred             eeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEE
Confidence            344455777889999999999888877 789999999863 32  2333322110       12388999999  98866


Q ss_pred             EEEeCCCeEEEEECCC-CCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCC
Q 022870           80 ISQGRDGTVKCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA  158 (291)
Q Consensus        80 ~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (291)
                      ++...++.|.+|++.. ++................                                       .++|+|
T Consensus       156 v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~---------------------------------------~~~~sp  196 (347)
T 3hfq_A          156 VIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR---------------------------------------HLVFSP  196 (347)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE---------------------------------------EEEECT
T ss_pred             EEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc---------------------------------------eEEECC
Confidence            6667789999999983 321100000000000000                                       056999


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCC--cce--eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNT--AER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL  234 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~  234 (291)
                      +|+.+++ ++..++.+.+|++..  ++.  +..+...  .   .. ......+..+. |+|+   |+.++++...++.|.
T Consensus       197 dg~~l~v-~~~~~~~v~v~~~~~~~g~~~~~~~~~~~--~---~~-~~~~~~~~~i~-~spd---G~~l~v~~~~~~~v~  265 (347)
T 3hfq_A          197 DGQYAFL-AGELSSQIASLKYDTQTGAFTQLGIVKTI--P---AD-YTAHNGAAAIR-LSHD---GHFLYVSNRGYNTLA  265 (347)
T ss_dssp             TSSEEEE-EETTTTEEEEEEEETTTTEEEEEEEEESS--C---TT-CCSCCEEEEEE-ECTT---SCEEEEEEETTTEEE
T ss_pred             CCCEEEE-EeCCCCEEEEEEecCCCCceEEeeeeeec--C---CC-CCCCCcceeEE-ECCC---CCEEEEEeCCCCEEE
Confidence            9986665 556689999999874  432  2222210  0   00 00113466776 9998   552346667789999


Q ss_pred             EEEccCCC--CceeeccccccceeEEEeecCCCeeEEecC-CCeEEEE--EcCCCcee
Q 022870          235 VWDIRNPG--IPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLY--NLDHSTVS  287 (291)
Q Consensus       235 vwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~i~vw--~~~~~~~~  287 (291)
                      +||+...+  +.+..+..+...+..++|+|++++|++++. ++.|.+|  |.+++++.
T Consensus       266 v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          266 VFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            99997322  344555566667899999999998877765 4899999  55566655

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=1.5e-20  Score=164.40  Aligned_cols=238  Identities=9%  Similarity=-0.056  Sum_probs=164.2

Q ss_pred             ccceeEEEEcCCCCEEEEecC-CC-----eEEEEeCCCCeEEEEEeeecCC----------------------cceEEEE
Q 022870           18 RASVTDVCFHQTKPILFAGTT-GG-----ELRIWDTVQHRTVSSSWVHSAA----------------------HGIVSVA   69 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~-dg-----~v~iwd~~~~~~~~~~~~~~~~----------------------~~v~~~~   69 (291)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+..+...                      ..|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456999999999999999988 88     9999999999887766654322                      2378999


Q ss_pred             EeecCCCCeEEEEeCCCeEEEEECCCC---CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccc
Q 022870           70 TGPSIGLNKVISQGRDGTVKCWDIENG---GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT  146 (291)
Q Consensus        70 ~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (291)
                      |+|  ||++|++++. +.|++||+.++   +...   +...........+++.........  ...+.++++........
T Consensus       116 ~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~---l~~~~~~~~~~~~SPDG~~la~~~--~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          116 WSP--DAQRLLFPLG-GELYLYDLKQEGKAAVRQ---LTHGEGFATDAKLSPKGGFVSFIR--GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ECT--TSSEEEEEET-TEEEEEESSSCSTTSCCB---CCCSSSCEEEEEECTTSSEEEEEE--TTEEEEEETTTTEEEEC
T ss_pred             ECC--CCCEEEEEeC-CcEEEEECCCCCcceEEE---cccCCcccccccCCCCCCEEEEEe--CCcEEEEecCCCCEEEe
Confidence            999  9999998886 89999999987   4321   122223444555665554433322  23455566655443222


Q ss_pred             cCCCC-------------------CCcccCCCCCcEEEEecCCcC---------------------------------eE
Q 022870          147 DSLCD-------------------SKDDVPAEGPKYMAVAGEQLS---------------------------------EV  174 (291)
Q Consensus       147 ~~~~~-------------------~~~~~~~~~~~~~~~~g~~d~---------------------------------~i  174 (291)
                      .....                   ..++|+|||+.+++++.  |+                                 .|
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~--d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI--DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE--ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE--cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            22111                   22899999988775432  32                                 78


Q ss_pred             EEEeCCC-cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-----CCCcEEEEEccCCCCceeec
Q 022870          175 EIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-----EDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       175 ~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-----~dg~i~vwd~~~~~~~~~~~  248 (291)
                      ++||+.+ ++......        .  ......+..+. | |+   |+ .|++++     .+..|++||+.+ ++....+
T Consensus       266 ~~~d~~~~~~~~~~~~--------~--~~~~~~~~~~~-~-pD---g~-~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~  328 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDL--------G--KEQDIYLARVN-W-RD---PQ-HLSFQRQSRDQKKLDLVEVTLAS-NQQRVLA  328 (741)
T ss_dssp             EEECSSTTCCCEEECC--------C--SCSSEEEEEEE-E-EE---TT-EEEEEEEETTSSEEEEEEEETTT-CCEEEEE
T ss_pred             EEEECCCCCceEEecC--------C--CCcceEEEEEE-e-CC---CC-EEEEEEecccCCeEEEEEEECCC-CceEEEE
Confidence            8999988 76543332        1  11245677787 9 98   55 666543     367899999998 6666666


Q ss_pred             ccccc----ceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          249 KVHLE----PVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       249 ~~h~~----~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      ..+..    .+..++|+|+|+++++++.||.++||.++
T Consensus       329 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          329 HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence            65543    45689999999999999999988888776

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=5.5e-20  Score=145.45  Aligned_cols=239  Identities=10%  Similarity=0.036  Sum_probs=153.5

Q ss_pred             EEcCCCC-EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CCeEEEEECCCCCC-CCC
Q 022870           25 CFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVKCWDIENGGL-SSN  101 (291)
Q Consensus        25 ~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~  101 (291)
                      .|.+++. .+++++.++.|.+||..+++....+..+.  .++ .++|+|  +++++++++. ++.|.+||+.+++. .. 
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~-   77 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGY--DFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKVV-   77 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCC--CEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEEE-
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccC--Ccc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeEE-
Confidence            4555444 47788899999999999999888877654  336 999999  9887766655 89999999998764 22 


Q ss_pred             CccccccceEEEEEeecccCccceeccCC-C--CceeeecccCccccccCCCCCC--cccCCCCCcEEEEecCCcCe-EE
Q 022870          102 PSLTIKTNSYHFCKLSLVKEPYANAKQAN-E--PKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSE-VE  175 (291)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~-i~  175 (291)
                       .............+++...... ..... .  ....|++...........+...  ++|+|+|+.++++ +..++. +.
T Consensus        78 -~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~-~~~~~~~i~  154 (331)
T 3u4y_A           78 -AIQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILI-DRSSANTVR  154 (331)
T ss_dssp             -EEEECSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEE-EETTTTEEE
T ss_pred             -ecccCCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEE-ecCCCceEE
Confidence             1111111211133333333333 22222 2  5667777665543332222222  9999999887764 444567 99


Q ss_pred             EEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc---eeeccccc
Q 022870          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP---LTAMKVHL  252 (291)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~h~  252 (291)
                      +|++.....+........    .    .......+. |+|+   |+.+++++..++.|++||+.+ ++.   +..+.. .
T Consensus       155 ~~~~~~~g~~~~~~~~~~----~----~~~~~~~~~-~spd---g~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~~-~  220 (331)
T 3u4y_A          155 RFKIDADGVLFDTGQEFI----S----GGTRPFNIT-FTPD---GNFAFVANLIGNSIGILETQN-PENITLLNAVGT-N  220 (331)
T ss_dssp             EEEECTTCCEEEEEEEEE----C----SSSSEEEEE-ECTT---SSEEEEEETTTTEEEEEECSS-TTSCEEEEEEEC-S
T ss_pred             EEEECCCCcEeecCCccc----c----CCCCccceE-ECCC---CCEEEEEeCCCCeEEEEECCC-CcccceeeeccC-C
Confidence            999886443321110000    0    112245665 9998   553556666789999999987 666   666664 4


Q ss_pred             cceeEEEeecCCCeeEEe-cCCCeEEEEEcCCCce
Q 022870          253 EPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTV  286 (291)
Q Consensus       253 ~~v~~~~~~~~~~~l~s~-s~dg~i~vw~~~~~~~  286 (291)
                      ..+..++|+|+|++|+.+ ..++.|.+||++++++
T Consensus       221 ~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          221 NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            667899999999976544 4578999999999887

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=2.2e-21  Score=165.01  Aligned_cols=241  Identities=8%  Similarity=-0.040  Sum_probs=161.3

Q ss_pred             CccceeEEEEcCCCCEEEEecC-CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC---CCeEEEEE
Q 022870           17 HRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWD   92 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd   92 (291)
                      +..+|++++|+|||+.||+++. ||+++||++..++... +..+.. ..+.+++|+|  | +.+++++.   +...++|.
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~-~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPI-NSVLDPHYGV--G-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCC-SEECEECTTC--S-EEEEEEECSTTSCCEEEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccc-cccccccCCC--C-eEEEEeccCCCCcceEEEE
Confidence            3668999999999999999887 9999999987666544 443431 3489999999  8 77777765   45566665


Q ss_pred             CCC--CCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC-
Q 022870           93 IEN--GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-  169 (291)
Q Consensus        93 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-  169 (291)
                      +..  ..... .+.....  .....+++................+|++...............++|+|||+.++.++.. 
T Consensus        95 ~~~~~~g~~~-~l~~~~~--~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~  171 (582)
T 3o4h_A           95 VNTSRPGEEQ-RLEAVKP--MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFG  171 (582)
T ss_dssp             EETTSTTCCE-ECTTSCS--BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEE
T ss_pred             EeccCCCccc-cccCCCC--ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcC
Confidence            543  21111 1111111  22335555554444444444444467766554222111111228899999876643221 


Q ss_pred             -CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC--cEEEEEccCCCCcee
Q 022870          170 -QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLT  246 (291)
Q Consensus       170 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~  246 (291)
                       ..+.|++||+.+++.. .+.        .|    .+.+..+. |+|+   |+ .|+++..++  .|++||+.+ ++.. 
T Consensus       172 ~~~~~i~~~d~~~g~~~-~l~--------~~----~~~~~~~~-~SpD---G~-~l~~~~~~~~~~i~~~d~~~-~~~~-  231 (582)
T 3o4h_A          172 GGRVSLFTSNLSSGGLR-VFD--------SG----EGSFSSAS-ISPG---MK-VTAGLETAREARLVTVDPRD-GSVE-  231 (582)
T ss_dssp             TTEEEEEEEETTTCCCE-EEC--------CS----SCEEEEEE-ECTT---SC-EEEEEECSSCEEEEEECTTT-CCEE-
T ss_pred             CCCeEEEEEcCCCCCce-Eee--------cC----CCccccce-ECCC---CC-EEEEccCCCeeEEEEEcCCC-CcEE-
Confidence             1167999999988754 444        33    33456676 9998   55 788888888  899999997 6666 


Q ss_pred             eccccccceeEEE--------eecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          247 AMKVHLEPVLCLS--------IDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       247 ~~~~h~~~v~~~~--------~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      .+.+|...+..++        |+|+|.++++++.|+.+++|++  ++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          232 DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred             EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence            7778887787778        9999988899999999999999  5544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=7.2e-20  Score=145.68  Aligned_cols=249  Identities=10%  Similarity=0.097  Sum_probs=158.4

Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCCCCCC
Q 022870           23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSN  101 (291)
Q Consensus        23 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~  101 (291)
                      .+++++++.++++++.+++|++||+.+++.+..+..+.. ..+..++|+|  ++++++ +...++.|.+||+.+++... 
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~-   79 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTF-   79 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEE-
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-CCCceeEECC--CCCEEEEEeCCCCcEEEEeCCCCcEEE-
Confidence            467888888999999999999999999998888775531 1378999999  887655 55678999999998876432 


Q ss_pred             Cccccccc------eEEEEEeecccCccceeccC-----------CCCceeeecccCccccc--cCCCCCC---cccCCC
Q 022870          102 PSLTIKTN------SYHFCKLSLVKEPYANAKQA-----------NEPKDCYEREVGETVDT--DSLCDSK---DDVPAE  159 (291)
Q Consensus       102 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~  159 (291)
                       .......      ......+++...........           ......+++........  .......   ++|+|+
T Consensus        80 -~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d  158 (349)
T 1jmx_B           80 -HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  158 (349)
T ss_dssp             -EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             -EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC
Confidence             1111110      01122233332222222211           24556666655322111  1111111   679999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCC------------CCCCCc------------------------
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP------------NFSSKG------------------------  203 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~------------~~~~~~------------------------  203 (291)
                      |+ +++ + +  +.|.+||+.+++....+.........            ......                        
T Consensus       159 g~-l~~-~-~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  233 (349)
T 1jmx_B          159 GS-LYV-A-G--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  233 (349)
T ss_dssp             SC-EEE-E-S--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             Cc-EEE-c-c--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence            98 654 3 2  34999999998877766531100000            000000                        


Q ss_pred             --------------------ceeeeeEEEecC-CCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeec
Q 022870          204 --------------------RGMCMAVQAYLP-SKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE  262 (291)
Q Consensus       204 --------------------~~~~~~~~~~~p-~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~  262 (291)
                                          ......+. |+| +   |+ +++++  ++.|++||+.+ ++.+..+.. ...+.+++|+|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sp~d---g~-~l~~~--~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~  304 (349)
T 1jmx_B          234 GYLSVDLKTGKTHTQEFADLTELYFTGL-RSPKD---PN-QIYGV--LNRLAKYDLKQ-RKLIKAANL-DHTYYCVAFDK  304 (349)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEE-ECSSC---TT-EEEEE--ESEEEEEETTT-TEEEEEEEC-SSCCCEEEECS
T ss_pred             eEEEEeccCCcEEecccccCCCcceeeE-ecCCC---CC-EEEEE--cCeEEEEECcc-CeEEEEEcC-CCCccceEECC
Confidence                                00123444 667 6   54 66666  88999999998 776666653 34578999999


Q ss_pred             CCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          263 SCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       263 ~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ++++|++++.++.|++||+++++.+..+
T Consensus       305 dg~~l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          305 KGDKLYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEecCCCeEEEEeccccceeeee
Confidence            9998988888999999999999887654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=3.3e-20  Score=151.76  Aligned_cols=161  Identities=9%  Similarity=0.032  Sum_probs=113.9

Q ss_pred             CccceeEEEEcCCCCEEE----EecCCCeEEEEeCCCC--------eE---EEEEeeecCCcceEEEEEeecCC-CCeEE
Q 022870           17 HRASVTDVCFHQTKPILF----AGTTGGELRIWDTVQH--------RT---VSSSWVHSAAHGIVSVATGPSIG-LNKVI   80 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~----s~~~dg~v~iwd~~~~--------~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~l~   80 (291)
                      |...|++++|+|++++|+    +|+.|+.|+|||+.++        +.   ...+.+|.  .+|.+++|+|  + +++|+
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~~p--~~~~~la  166 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG--GMVIDMKWNP--TVPSMVA  166 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG--GSEEEEEECS--SCTTEEE
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCC--CceEEEEECC--CCCCEEE
Confidence            667899999999999999    8999999999998654        22   34445576  4499999999  6 68999


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCC
Q 022870           81 SQGRDGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE  159 (291)
Q Consensus        81 s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (291)
                      +++.||+|++||++++....    .... .....+                                       ++|+|+
T Consensus       167 s~s~Dg~v~iwD~~~~~~~~----~~~~~~~~v~~---------------------------------------v~wspd  203 (434)
T 2oit_A          167 VCLADGSIAVLQVTETVKVC----ATLPSTVAVTS---------------------------------------VCWSPK  203 (434)
T ss_dssp             EEETTSCEEEEEESSSEEEE----EEECGGGCEEE---------------------------------------EEECTT
T ss_pred             EEECCCeEEEEEcCCCccee----eccCCCCceeE---------------------------------------EEEcCC
Confidence            99999999999998763211    1100 000111                                       669999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCC---CcceeeeeEEEecCCCCCCceEE-EeecCCC----
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS---KGRGMCMAVQAYLPSKSQGFVNV-LAGYEDG----  231 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~g~~~l-~~g~~dg----  231 (291)
                      |..++  +|+.||.|++||++ ++....+.        .|..   .....+.++. |+++   +. ++ +.+..+|    
T Consensus       204 g~~la--sgs~dg~v~iwd~~-~~~~~~~~--------~~~~~~~~~~~~v~~v~-w~~~---~~-~l~~~~~~dg~~~~  267 (434)
T 2oit_A          204 GKQLA--VGKQNGTVVQYLPT-LQEKKVIP--------CPPFYESDHPVRVLDVL-WIGT---YV-FAIVYAAADGTLET  267 (434)
T ss_dssp             SSCEE--EEETTSCEEEECTT-CCEEEEEC--------CCTTCCTTSCEEEEEEE-EEET---TE-EEEEEEETTCCSSS
T ss_pred             CCEEE--EEcCCCcEEEEccC-Cccccccc--------CCcccCCCCceeEEEEE-EecC---ce-EEEEEccCCCccCC
Confidence            87766  56679999999998 55555554        2221   1234778887 9886   43 44 3344443    


Q ss_pred             --cEEEEEccC
Q 022870          232 --SILVWDIRN  240 (291)
Q Consensus       232 --~i~vwd~~~  240 (291)
                        .+++|+++.
T Consensus       268 ~~~v~i~~l~~  278 (434)
T 2oit_A          268 SPDVVMALLPK  278 (434)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCceEEEEecc
Confidence              389999986

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=2.4e-20  Score=162.64  Aligned_cols=210  Identities=9%  Similarity=0.020  Sum_probs=146.4

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCC-cceEEEEEeecCCCCeEEEEeCC---------CeE
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQGRD---------GTV   88 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~d---------g~i   88 (291)
                      ..+.+++|+|||+++++ +.||+|++||+.+++....+..|... ..|.+++|+|  ||++|++++.+         +.|
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECC--CCCEEEEEecCccceeecceeeE
Confidence            34788999999997776 78999999999999887777655420 1389999999  99999998764         788


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      .+||+.+++...  +.........     .                                 ..++|+|+|+.++.++ 
T Consensus        94 ~~~d~~~~~~~~--l~~~~~~~~~-----~---------------------------------~~~~~SPdG~~la~~~-  132 (723)
T 1xfd_A           94 VLSKIPHGDPQS--LDPPEVSNAK-----L---------------------------------QYAGWGPKGQQLIFIF-  132 (723)
T ss_dssp             EEEESSSCCCEE--CCCTTCCSCC-----C---------------------------------SBCCBCSSTTCEEEEE-
T ss_pred             EEEECCCCceEe--ccCCcccccc-----c---------------------------------cccEECCCCCEEEEEE-
Confidence            899999875411  1000000000     0                                 0066999998776532 


Q ss_pred             CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCc--------------ceeeeeEEEecCCCCCCceEEEeecCCC---
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG--------------RGMCMAVQAYLPSKSQGFVNVLAGYEDG---  231 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~p~~~~g~~~l~~g~~dg---  231 (291)
                        ++.|++||+.+++......        .+....              .....++. |+|+   |+ .|++++.|+   
T Consensus       133 --~~~i~~~~~~~g~~~~~~~--------~~~~~~~~~g~~~~v~~ee~~~~~~~~~-~SpD---g~-~la~~~~~~~~~  197 (723)
T 1xfd_A          133 --ENNIYYCAHVGKQAIRVVS--------TGKEGVIYNGLSDWLYEEEILKTHIAHW-WSPD---GT-RLAYAAINDSRV  197 (723)
T ss_dssp             --TTEEEEESSSSSCCEEEEC--------CCBTTTEEEEECCHHHHHTTSSSSEEEE-ECTT---SS-EEEEEEEECTTS
T ss_pred             --CCeEEEEECCCCceEEEec--------CCCCCceECcccceeEEEEeccCcceEE-ECCC---CC-EEEEEEECCCcc
Confidence              3789999999887665544        221111              01124565 9998   55 777766442   


Q ss_pred             -------------------------------cEEEEEccCCCCceeecccc------ccceeEEEeecCCCeeEEecC--
Q 022870          232 -------------------------------SILVWDIRNPGIPLTAMKVH------LEPVLCLSIDESCNGGISGGA--  272 (291)
Q Consensus       232 -------------------------------~i~vwd~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~s~--  272 (291)
                                                     .|++||+.+ ++....+..+      ...+.+++|+|||++|++.+.  
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~  276 (723)
T 1xfd_A          198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA  276 (723)
T ss_dssp             CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred             ceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC
Confidence                                           799999987 5544555543      678999999999998876643  


Q ss_pred             --CCeEEEEEcCCCceee
Q 022870          273 --DQKIVLYNLDHSTVSH  288 (291)
Q Consensus       273 --dg~i~vw~~~~~~~~~  288 (291)
                        +..|++||+.++++..
T Consensus       277 ~~~~~i~~~d~~~g~~~~  294 (723)
T 1xfd_A          277 QNVSILTLCDATTGVCTK  294 (723)
T ss_dssp             SCEEEEEEEETTTCCEEE
T ss_pred             CCeEEEEEEeCCCCcceE
Confidence              3689999999987654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=7.5e-18  Score=134.91  Aligned_cols=250  Identities=7%  Similarity=0.007  Sum_probs=151.4

Q ss_pred             CccceeEEEEcCCCCEEEEecCC----CeEEEEeCCC--CeEEE--EEeeecCCcceEEEEEeecCCCCeEEEEe-CCCe
Q 022870           17 HRASVTDVCFHQTKPILFAGTTG----GELRIWDTVQ--HRTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGT   87 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~d----g~v~iwd~~~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~   87 (291)
                      |...+..++|+|+|++|++++.+    +.|.+|++..  ++...  ....+.  .....+++    ++++|++++ .++.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~--~~p~~~~~----dg~~l~~~~~~~~~  121 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG--ADPCYLTT----NGKNIVTANYSGGS  121 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS--SCEEEEEE----CSSEEEEEETTTTE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC--CCcEEEEE----CCCEEEEEECCCCE
Confidence            66778889999999999988876    7999998765  44332  222222  23666666    346666555 6889


Q ss_pred             EEEEECCCCCCCCCCccccc------------cceEEEEEeecccCccceeccCCCCceeeecccCcc------c-----
Q 022870           88 VKCWDIENGGLSSNPSLTIK------------TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET------V-----  144 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-----  144 (291)
                      |.+|++..............            ....+...+++................+|++.....      .     
T Consensus       122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence            99999976543321111000            011233445544433333333344556666654331      1     


Q ss_pred             --cccCCCCCC---cccCCCCCcEEEEecCCcCeEEEEeCCCcce--eeEecccccCCCCCCCCCcceeeeeEEEecCCC
Q 022870          145 --DTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK  217 (291)
Q Consensus       145 --~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  217 (291)
                        .........   ++|+|+|+.+++ ++..++.|.+||+.+++.  +..+.        .... .......+. |+|+ 
T Consensus       202 ~~~~~~~~~~~~~~~~~spdg~~l~v-~~~~~~~v~v~~~~~g~~~~~~~~~--------~~~~-~~~~~~~i~-~spd-  269 (361)
T 3scy_A          202 PEAFKVAPGSGPRHLIFNSDGKFAYL-INEIGGTVIAFRYADGMLDEIQTVA--------ADTV-NAQGSGDIH-LSPD-  269 (361)
T ss_dssp             EEEEECCTTCCEEEEEECTTSSEEEE-EETTTCEEEEEEEETTEEEEEEEEE--------SCSS-CCCCEEEEE-ECTT-
T ss_pred             ccceecCCCCCCeEEEEcCCCCEEEE-EcCCCCeEEEEEecCCceEEeEEEe--------cCCC-CCCCcccEE-ECCC-
Confidence              111222222   899999987665 455589999999987654  22222        1111 112235666 9998 


Q ss_pred             CCCceEEEeec-C-CCcEEEEEccC-CCC--ceeeccccccceeEEEeecCCCeeEEec-CCCeEEEEEc--CCCceee
Q 022870          218 SQGFVNVLAGY-E-DGSILVWDIRN-PGI--PLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNL--DHSTVSH  288 (291)
Q Consensus       218 ~~g~~~l~~g~-~-dg~i~vwd~~~-~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~--~~~~~~~  288 (291)
                        |+ +|+++. . ++.|.+|++.. .++  .+..+.. ...+..++|+|+|++|++++ .++.|.+|++  +++++..
T Consensus       270 --g~-~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          270 --GK-YLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             --SS-EEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             --CC-EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence              55 665554 4 58999999962 133  3334443 45788999999999887776 6789999655  4666543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=1e-19  Score=159.01  Aligned_cols=241  Identities=13%  Similarity=0.040  Sum_probs=156.1

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      .|.+++|+|||++|++++. +.|++||+.++.  ....+..+..  .+.+++|+|  ||++|+.++. +.|++||+.+++
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~--~~~~~~~SP--DG~~la~~~~-~~i~~~d~~~g~  183 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEG--FATDAKLSP--KGGFVSFIRG-RNLWVIDLASGR  183 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSS--CEEEEEECT--TSSEEEEEET-TEEEEEETTTTE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCc--ccccccCCC--CCCEEEEEeC-CcEEEEecCCCC
Confidence            4899999999999998886 899999998872  3344555553  499999999  9999998874 699999998765


Q ss_pred             CCCCCccccccce----------------EEEEEeecccCccceeccCCC------------------------------
Q 022870           98 LSSNPSLTIKTNS----------------YHFCKLSLVKEPYANAKQANE------------------------------  131 (291)
Q Consensus        98 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~------------------------------  131 (291)
                      ...  +.......                .....+++.............                              
T Consensus       184 ~~~--~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          184 QMQ--LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             EEE--CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             EEE--eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            422  11111100                112334444333332222111                              


Q ss_pred             --Cceeeeccc-CccccccCC-CCCC----cccCCCCCcEEEEec---CCcCeEEEEeCCCcceeeEecccccCCCCCCC
Q 022870          132 --PKDCYEREV-GETVDTDSL-CDSK----DDVPAEGPKYMAVAG---EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS  200 (291)
Q Consensus       132 --~~~~~~~~~-~~~~~~~~~-~~~~----~~~~~~~~~~~~~~g---~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  200 (291)
                        .+..+++.. ......... .+..    ++| |+|+.+++.+.   ..+..|++||+.+++....+..        +.
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------~~  332 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE--------TS  332 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE--------EC
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc--------CC
Confidence              223344444 332221111 2222    889 99988776433   2467899999999887666652        21


Q ss_pred             CCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEE-EeecCCCeeE-EecCCC--eE
Q 022870          201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL-SIDESCNGGI-SGGADQ--KI  276 (291)
Q Consensus       201 ~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~l~-s~s~dg--~i  276 (291)
                      ......+..+. |+|+   |+ ++++++.||.++||.+...+. ...+..|...|..+ .|+|+++.|+ +++.++  .+
T Consensus       333 ~~~~~~~~~~~-~spd---g~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~  406 (741)
T 2ecf_A          333 PTWVPLHNSLR-FLDD---GS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARES  406 (741)
T ss_dssp             SSCCCCCSCCE-ECTT---SC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCB
T ss_pred             CCcCCcCCceE-ECCC---Ce-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceE
Confidence            10000223454 9998   55 888999999888887763245 77888888888887 5999998775 555555  89


Q ss_pred             EEEEcCC
Q 022870          277 VLYNLDH  283 (291)
Q Consensus       277 ~vw~~~~  283 (291)
                      ++|+++.
T Consensus       407 ~l~~~~~  413 (741)
T 2ecf_A          407 QIYAVPL  413 (741)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEc
Confidence            9999864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=1.6e-18  Score=138.22  Aligned_cols=238  Identities=10%  Similarity=0.062  Sum_probs=156.9

Q ss_pred             CceEEecCCccceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCCc-------ceEEEEEeecCCCCeEE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAH-------GIVSVATGPSIGLNKVI   80 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~l~   80 (291)
                      +.+..+.. ...+..++|+|+|+++ ++...++.|.+||..+++.+..+..+....       .+.+++|+|  ++++++
T Consensus        80 ~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~  156 (353)
T 3vgz_A           80 EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVY  156 (353)
T ss_dssp             CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEE
T ss_pred             eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEE
Confidence            44555543 3457889999999855 555668999999999999888877654211       268899999  988877


Q ss_pred             EEe--CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCC---CCCC--
Q 022870           81 SQG--RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL---CDSK--  153 (291)
Q Consensus        81 s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--  153 (291)
                      +++  .++.|.+||..+++...  .............+++...... ..........++............   ++..  
T Consensus       157 ~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  233 (353)
T 3vgz_A          157 ISGIGKESVIWVVDGGNIKLKT--AIQNTGKMSTGLALDSEGKRLY-TTNADGELITIDTADNKILSRKKLLDDGKEHFF  233 (353)
T ss_dssp             EEEESSSCEEEEEETTTTEEEE--EECCCCTTCCCCEEETTTTEEE-EECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred             EEecCCCceEEEEcCCCCceEE--EecCCCCccceEEECCCCCEEE-EEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence            665  47899999998876533  1111111112222333322221 222234455566665544332221   1111  


Q ss_pred             --cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC
Q 022870          154 --DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (291)
Q Consensus       154 --~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (291)
                        ++|+|+++.+++ +...++.|.+||+.+++.+..+..       +.       ...+. |+|+   |+.++++...++
T Consensus       234 ~~~~~s~dg~~l~~-~~~~~~~v~~~d~~~~~~~~~~~~-------~~-------~~~~~-~s~d---g~~l~v~~~~~~  294 (353)
T 3vgz_A          234 INISLDTARQRAFI-TDSKAAEVLVVDTRNGNILAKVAA-------PE-------SLAVL-FNPA---RNEAYVTHRQAG  294 (353)
T ss_dssp             EEEEEETTTTEEEE-EESSSSEEEEEETTTCCEEEEEEC-------SS-------CCCEE-EETT---TTEEEEEETTTT
T ss_pred             ceEEECCCCCEEEE-EeCCCCEEEEEECCCCcEEEEEEc-------CC-------CceEE-ECCC---CCEEEEEECCCC
Confidence              789999987765 455579999999999988877763       11       13454 9998   443555666799


Q ss_pred             cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC
Q 022870          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD  273 (291)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  273 (291)
                      .|.+||..+ ++.+..+.. ...+.+++|+|++++|+.+..+
T Consensus       295 ~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          295 KVSVIDAKS-YKVVKTFDT-PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEEEEETTT-TEEEEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred             eEEEEECCC-CeEEEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence            999999998 777777765 3467999999999977665554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=7.9e-19  Score=152.67  Aligned_cols=251  Identities=10%  Similarity=-0.001  Sum_probs=158.3

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC-----CeEEEEEeeecCC------------cceEEEEEeec
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAA------------HGIVSVATGPS   73 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~------------~~v~~~~~~~~   73 (291)
                      ...+..|...+.+++|+|||++|+++ .|+.|++||+.+     ++.......+...            ..+.++.|+| 
T Consensus       113 ~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-  190 (706)
T 2z3z_A          113 VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-  190 (706)
T ss_dssp             EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-
T ss_pred             eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-
Confidence            34455677889999999999999985 679999999988     7765544333221            0147999999 


Q ss_pred             CCCCeEEEEe---------------------------------CCCeEEEEECCCCCCCCCCccccccceEEEEEeeccc
Q 022870           74 IGLNKVISQG---------------------------------RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK  120 (291)
Q Consensus        74 ~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (291)
                       ||++|++++                                 .+..|.+||+.+++..................+++..
T Consensus       191 -Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg  269 (706)
T 2z3z_A          191 -KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE  269 (706)
T ss_dssp             -TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS
T ss_pred             -CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC
Confidence             999999887                                 4468999999887642210001112233444555554


Q ss_pred             CccceeccCC----CCceeeecccC-ccccc---cCCCC----CCcccCC--CCCcEEEEecCCcCeEEEEeCC-Cccee
Q 022870          121 EPYANAKQAN----EPKDCYEREVG-ETVDT---DSLCD----SKDDVPA--EGPKYMAVAGEQLSEVEIWDLN-TAERC  185 (291)
Q Consensus       121 ~~~~~~~~~~----~~~~~~~~~~~-~~~~~---~~~~~----~~~~~~~--~~~~~~~~~g~~d~~i~~wd~~-~~~~~  185 (291)
                      ..........    .....++.... .....   .....    ..++|+|  +|+ +++ +++.|+.++||++. ++..+
T Consensus       270 ~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~-~~~~~g~~~l~~~~~~~~~~  347 (706)
T 2z3z_A          270 NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIW-QSRRDGWNHLYLYDTTGRLI  347 (706)
T ss_dssp             SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEE-EECTTSSCEEEEEETTSCEE
T ss_pred             CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEE-EEccCCccEEEEEECCCCEE
Confidence            4333322222    23444555544 21111   11111    1278999  886 444 56668889999876 55566


Q ss_pred             eEecccccCCCCCCCCCcceeeee-EEEecCCCCCCceEEEeecCCC----cEEEEEccCCCCceeeccccccceeEEEe
Q 022870          186 TRLHQNSCGGSPNFSSKGRGMCMA-VQAYLPSKSQGFVNVLAGYEDG----SILVWDIRNPGIPLTAMKVHLEPVLCLSI  260 (291)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~g~~~l~~g~~dg----~i~vwd~~~~~~~~~~~~~h~~~v~~~~~  260 (291)
                      ..+.        .+.    ..+.. +. |+|+   |+.+++++..++    .|+.||+.+ +. ...+. |...+.+++|
T Consensus       348 ~~l~--------~~~----~~v~~~~~-~spd---g~~l~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~-~~~~~~~~~~  408 (706)
T 2z3z_A          348 RQVT--------KGE----WEVTNFAG-FDPK---GTRLYFESTEASPLERHFYCIDIKG-GK-TKDLT-PESGMHRTQL  408 (706)
T ss_dssp             EECC--------CSS----SCEEEEEE-ECTT---SSEEEEEESSSCTTCBEEEEEETTC-CC-CEESC-CSSSEEEEEE
T ss_pred             EecC--------CCC----eEEEeeeE-EcCC---CCEEEEEecCCCCceEEEEEEEcCC-CC-ceecc-CCCceEEEEE
Confidence            6665        332    22333 44 9998   443555666655    677777775 43 34444 5677999999


Q ss_pred             ecCCCeeEEecCC----CeEEEEEcCCCc
Q 022870          261 DESCNGGISGGAD----QKIVLYNLDHST  285 (291)
Q Consensus       261 ~~~~~~l~s~s~d----g~i~vw~~~~~~  285 (291)
                      +|++++|+....+    +.|++||+++++
T Consensus       409 spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          409 SPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            9999988766443    569999998876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=2.4e-18  Score=137.02  Aligned_cols=217  Identities=11%  Similarity=0.100  Sum_probs=134.4

Q ss_pred             CCccceeEEEEcCCCCEEEEecC---CCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCCeEE
Q 022870           16 GHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVK   89 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~   89 (291)
                      .+...+..++|+|+|+ |++++.   ++.|.+||+.+++  .+..+..+.  ..+..++|+|  ++++|++++ .++.|.
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~--~~p~~~a~sp--dg~~l~~~~~~~~~v~  111 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG--TPPAYVAVDE--ARQLVYSANYHKGTAE  111 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES--CCCSEEEEET--TTTEEEEEETTTTEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC--CCCEEEEECC--CCCEEEEEeCCCCEEE
Confidence            4556788899999998 555543   6899999997765  334444455  3488999999  999888877 789999


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-cccCCCCCcEEEEec
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAG  168 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g  168 (291)
                      +|++.......    .+.       .+......                    ........+.. ++|+|+|+ +++ ++
T Consensus       112 v~~~~~~g~~~----~~~-------~~~~~~~~--------------------p~~~~~~~~~~~~~~spdg~-l~v-~~  158 (347)
T 3hfq_A          112 VMKIAADGALT----LTD-------TVQHSGHG--------------------PRPEQDGSHIHYTDLTPDNR-LAV-ID  158 (347)
T ss_dssp             EEEECTTSCEE----EEE-------EEECCCCC--------------------SSTTCSSCCEEEEEECTTSC-EEE-EE
T ss_pred             EEEeCCCCCee----ecc-------eeecCCCC--------------------CCccccCCCceEEEECCCCc-EEE-Ee
Confidence            99996432110    000       00000000                    00000000000 67999998 554 56


Q ss_pred             CCcCeEEEEeCC-CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC-CCc--
Q 022870          169 EQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIP--  244 (291)
Q Consensus       169 ~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~~~--  244 (291)
                      ..++.|++||+. +++........      ..   .......+. |+|+   |+.+++++..++.|++|++... ++.  
T Consensus       159 ~~~~~v~~~~~~~~g~~~~~~~~~------~~---~g~~p~~~~-~spd---g~~l~v~~~~~~~v~v~~~~~~~g~~~~  225 (347)
T 3hfq_A          159 LGSDKVYVYNVSDAGQLSEQSVLT------ME---AGFGPRHLV-FSPD---GQYAFLAGELSSQIASLKYDTQTGAFTQ  225 (347)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEE------CC---TTCCEEEEE-ECTT---SSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEEECCCCcEEEeeeEE------cC---CCCCCceEE-ECCC---CCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence            668899999998 44432211100      11   111234565 9998   5534555678899999998741 221  


Q ss_pred             eeeccccc------cceeEEEeecCCCee-EEecCCCeEEEEEcCC
Q 022870          245 LTAMKVHL------EPVLCLSIDESCNGG-ISGGADQKIVLYNLDH  283 (291)
Q Consensus       245 ~~~~~~h~------~~v~~~~~~~~~~~l-~s~s~dg~i~vw~~~~  283 (291)
                      +..+....      ..+..++|+|+|++| ++...++.|.+|+++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            22222221      358899999999977 5666789999999973

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.82  E-value=3.1e-18  Score=135.87  Aligned_cols=228  Identities=9%  Similarity=0.087  Sum_probs=137.1

Q ss_pred             EEEEecCCCeEEEEeCC-CC--eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC-CeEEEEECC--CCCCCCCCccc
Q 022870           32 ILFAGTTGGELRIWDTV-QH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-GTVKCWDIE--NGGLSSNPSLT  105 (291)
Q Consensus        32 ~l~s~~~dg~v~iwd~~-~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~--~~~~~~~~~~~  105 (291)
                      ++++++.|+.|++||+. ++  +.+..+ .+.  ..+.+++|+|  ++++|++++.+ +.|.+|++.  +++...  +..
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~~--~~~   79 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVP--GQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTF--AAE   79 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECS--SCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEE--EEE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecC--CCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCceee--ccc
Confidence            44555889999999985 33  233333 233  4489999999  99988888876 999999997  443211  111


Q ss_pred             ccc-ceEEEEEeecccCccceeccCCCCceeeecccCc--cccccCCCCCC---cccCCCCCcEEEEecCCcCeEEEEeC
Q 022870          106 IKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE--TVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDL  179 (291)
Q Consensus       106 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~  179 (291)
                      +.. .......+++................+|++....  ........+..   ++|+|+++.+++ ++..++.|++||+
T Consensus        80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-~~~~~~~v~~~d~  158 (343)
T 1ri6_A           80 SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWV-PALKQDRICLFTV  158 (343)
T ss_dssp             EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEE-EEGGGTEEEEEEE
T ss_pred             cccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEE-ecCCCCEEEEEEe
Confidence            111 1222233333333222233334556677773111  11112222222   899999987765 4435799999999


Q ss_pred             CC-cceee----EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC-CCc--eeecc--
Q 022870          180 NT-AERCT----RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIP--LTAMK--  249 (291)
Q Consensus       180 ~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~~~--~~~~~--  249 (291)
                      .+ ++...    .+.        .+   ....+..+. |+|+   |+.+++++..++.|++||+... +..  ...+.  
T Consensus       159 ~~~~~~~~~~~~~~~--------~~---~~~~~~~~~-~~pd---g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~  223 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVT--------TV---EGAGPRHMV-FHPN---EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM  223 (343)
T ss_dssp             CTTSCEEEEEEEEEE--------CS---TTCCEEEEE-ECTT---SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             cCCCceeeecccccc--------cC---CCCCcceEE-ECCC---CCEEEEEeCCCCEEEEEEecCCCCcEEEEeecccc
Confidence            87 54432    222        11   122345566 9998   5424456668999999999631 222  12221  


Q ss_pred             --cc--ccceeEEEeecCCCeeE-EecCCCeEEEEEcC
Q 022870          250 --VH--LEPVLCLSIDESCNGGI-SGGADQKIVLYNLD  282 (291)
Q Consensus       250 --~h--~~~v~~~~~~~~~~~l~-s~s~dg~i~vw~~~  282 (291)
                        ++  ...+..++|+|++++|+ ++..++.|++|+++
T Consensus       224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          224 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence              11  23567899999998776 55679999999998

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.82  E-value=5e-18  Score=131.66  Aligned_cols=183  Identities=8%  Similarity=0.038  Sum_probs=125.0

Q ss_pred             EecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC-CCCCCCCccccccceEEE
Q 022870           35 AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-GGLSSNPSLTIKTNSYHF  113 (291)
Q Consensus        35 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~  113 (291)
                      .++.|++|++||+.+++... +..|..  .|.+++|+|  ++++|++++ ++.|++||+.+ ++...  .......... 
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~--~v~~~~~sp--dg~~l~~~~-~~~i~~~d~~~~~~~~~--~~~~~~~~~~-   87 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-VWQTPE--LFEAPNWSP--DGKYLLLNS-EGLLYRLSLAGDPSPEK--VDTGFATICN-   87 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-EEEESS--CCEEEEECT--TSSEEEEEE-TTEEEEEESSSCCSCEE--CCCTTCCCBC-
T ss_pred             CCCcceeEEEEeCCCCceee-eccCCc--ceEeeEECC--CCCEEEEEc-CCeEEEEeCCCCCCceE--eccccccccc-
Confidence            45789999999999887664 445664  499999999  999999877 78999999988 64321  1000000000 


Q ss_pred             EEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc--CeEEEEeCCCcceeeEeccc
Q 022870          114 CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL--SEVEIWDLNTAERCTRLHQN  191 (291)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d--~~i~~wd~~~~~~~~~~~~~  191 (291)
                                                            ..++|+|+++.++++....+  ..|..||..+++ ...+.  
T Consensus        88 --------------------------------------~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--  126 (297)
T 2ojh_A           88 --------------------------------------NDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--  126 (297)
T ss_dssp             --------------------------------------SCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--
T ss_pred             --------------------------------------cceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--
Confidence                                                  00669999987765442233  445555555544 33333  


Q ss_pred             ccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec
Q 022870          192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG  271 (291)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  271 (291)
                            .+     ..+..+. |+|+   ++.+++++..++.+++|+++........+..|...+.+++|+|++++|+.++
T Consensus       127 ------~~-----~~~~~~~-~spd---g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          127 ------KN-----LPSYWHG-WSPD---GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             ------SS-----SSEEEEE-ECTT---SSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred             ------cC-----CCccceE-ECCC---CCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEe
Confidence                  11     1255565 9998   5534448888999999997543455667777888999999999999887665


Q ss_pred             -CCCeEEEEEcC
Q 022870          272 -ADQKIVLYNLD  282 (291)
Q Consensus       272 -~dg~i~vw~~~  282 (291)
                       .|+.+++|+++
T Consensus       192 ~~~~~~~i~~~~  203 (297)
T 2ojh_A          192 SRTGQMQIWRVR  203 (297)
T ss_dssp             CTTSSCEEEEEE
T ss_pred             cCCCCccEEEEC
Confidence             58999999986

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=2e-18  Score=150.13  Aligned_cols=245  Identities=11%  Similarity=-0.014  Sum_probs=153.8

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC---
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN---   95 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---   95 (291)
                      ..|.+++|+|+ ..++.+ .|+.|++||+.+++.... ..+.  ..+.+++|+|  +|++|+++ .|+.|++||+.+   
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l-~~~~--~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYL-FDTN--EETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGE  153 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEE-ECCT--TCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTS
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEc-cCCc--ccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccc
Confidence            56999999999 555554 359999999988876543 3344  3488999999  99999885 679999999987   


Q ss_pred             --CCCCCCCccccccce--------------EEEEEeecccCccceecc-------------------------------
Q 022870           96 --GGLSSNPSLTIKTNS--------------YHFCKLSLVKEPYANAKQ-------------------------------  128 (291)
Q Consensus        96 --~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-------------------------------  128 (291)
                        ++...  +.......              .....+++..........                               
T Consensus       154 ~~g~~~~--~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~  231 (706)
T 2z3z_A          154 GMSRAIA--VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP  231 (706)
T ss_dssp             CCCCCEE--SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred             cCCCcEE--eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence              65322  11111110              122334443333322221                               


Q ss_pred             -CCCCceeeecccCccccccCC-CCCC----cccCCCCCcEEEEecCC---cCeEEEEeCCCcceeeEecccccCCCCCC
Q 022870          129 -ANEPKDCYEREVGETVDTDSL-CDSK----DDVPAEGPKYMAVAGEQ---LSEVEIWDLNTAERCTRLHQNSCGGSPNF  199 (291)
Q Consensus       129 -~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~g~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  199 (291)
                       ......++++........... .+..    ++|+|+|+.+++++...   +..|++||+.+++....+...      .+
T Consensus       232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~------~~  305 (706)
T 2z3z_A          232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE------TD  305 (706)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE------EC
T ss_pred             CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc------cC
Confidence             112344455554443222211 2322    89999998776533221   138999999998443333210      11


Q ss_pred             CCCcceeeeeEEEecC--CCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeE-EEeecCCCeeEEec-CCC-
Q 022870          200 SSKGRGMCMAVQAYLP--SKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC-LSIDESCNGGISGG-ADQ-  274 (291)
Q Consensus       200 ~~~~~~~~~~~~~~~p--~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~s-~dg-  274 (291)
                      .. ....+..+. |+|  +   |+ +++++..||.+++|++...+..+..+..|...+.+ ++|+|+++.|+.++ .++ 
T Consensus       306 ~~-~~~~~~~~~-~sp~~d---g~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~  379 (706)
T 2z3z_A          306 KH-YVEPLHPLT-FLPGSN---NQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP  379 (706)
T ss_dssp             SS-CCCCCSCCE-ECTTCS---SE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT
T ss_pred             CC-eECccCCce-eecCCC---CE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC
Confidence            00 011223455 999  7   55 88999999999999887336777888888888877 79999998776544 444 


Q ss_pred             ---eEEEEEcCCCc
Q 022870          275 ---KIVLYNLDHST  285 (291)
Q Consensus       275 ---~i~vw~~~~~~  285 (291)
                         .|..||+++++
T Consensus       380 ~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          380 LERHFYCIDIKGGK  393 (706)
T ss_dssp             TCBEEEEEETTCCC
T ss_pred             ceEEEEEEEcCCCC
Confidence               67777877765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=2e-18  Score=150.50  Aligned_cols=258  Identities=9%  Similarity=-0.042  Sum_probs=153.8

Q ss_pred             CCceEEecCCcc---ceeEEEEcCCCCEEEEecCC---------CeEEEEeCCCCeEEEEEeeec-CCcceEEEEEeecC
Q 022870            8 PDPVAVLRGHRA---SVTDVCFHQTKPILFAGTTG---------GELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSI   74 (291)
Q Consensus         8 ~~~~~~l~~h~~---~v~~l~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~   74 (291)
                      ++....+.+|..   .|.+++|||||++|++++.+         +.+.+||+.+++. ..+.... ....+..++|+|  
T Consensus        47 g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP--  123 (723)
T 1xfd_A           47 NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP--  123 (723)
T ss_dssp             CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS--
T ss_pred             CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC--
Confidence            345566666665   49999999999999998764         7889999998876 3333221 112388999999  


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCCCCCCCccccccce------------------EEEEEeecccCccceeccCC------
Q 022870           75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS------------------YHFCKLSLVKEPYANAKQAN------  130 (291)
Q Consensus        75 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~------  130 (291)
                      ||+.|+.++. +.|++||+.+++...  +.......                  .....+++............      
T Consensus       124 dG~~la~~~~-~~i~~~~~~~g~~~~--~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~  200 (723)
T 1xfd_A          124 KGQQLIFIFE-NNIYYCAHVGKQAIR--VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM  200 (723)
T ss_dssp             STTCEEEEET-TEEEEESSSSSCCEE--EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred             CCCEEEEEEC-CeEEEEECCCCceEE--EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceE
Confidence            9999999886 799999998875432  11111110                  12344444443333222111      


Q ss_pred             ---------------------------CCceeeecccCccccccCCCC------CC----cccCCCCCcEEEEec--CCc
Q 022870          131 ---------------------------EPKDCYEREVGETVDTDSLCD------SK----DDVPAEGPKYMAVAG--EQL  171 (291)
Q Consensus       131 ---------------------------~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~g--~~d  171 (291)
                                                 ....++++...... ..+..+      ..    ++|+|||+.++..+.  ..+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  279 (723)
T 1xfd_A          201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD-LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV  279 (723)
T ss_dssp             EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC-EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred             EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee-EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence                                       12334454443321 112221      12    899999975543322  235


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe-ecCCC------cEEEEEccCCCC-
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYEDG------SILVWDIRNPGI-  243 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~~dg------~i~vwd~~~~~~-  243 (291)
                      ..|++||+.+++....+..       .+..........+. |+|+   |+.+++. +..++      .|++||..+.+. 
T Consensus       280 ~~i~~~d~~~g~~~~~~~~-------~~~~~~~~~~~~~~-~spd---g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  348 (723)
T 1xfd_A          280 SILTLCDATTGVCTKKHED-------ESEAWLHRQNEEPV-FSKD---GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN  348 (723)
T ss_dssp             EEEEEEETTTCCEEEEEEE-------ECSSCCCCCCCCCE-ECTT---SCSEEEEEEECCSSSSCEEEEEEECSSCCSSS
T ss_pred             EEEEEEeCCCCcceEEEEe-------ccCCEEeccCCCce-EcCC---CCeEEEEEecccCCCcceeEEEEEeccCCCCc
Confidence            6899999999887665542       11111110012444 9998   4423333 55677      577777323133 


Q ss_pred             -ceeeccccccceeE-EEeecCCCeeEEecCC---CeEEEEEcCC
Q 022870          244 -PLTAMKVHLEPVLC-LSIDESCNGGISGGAD---QKIVLYNLDH  283 (291)
Q Consensus       244 -~~~~~~~h~~~v~~-~~~~~~~~~l~s~s~d---g~i~vw~~~~  283 (291)
                       ....+..+...+.. ++|+|+++.|+..+.+   +.+++|+++.
T Consensus       349 ~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          349 DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence             14555544444554 6999999998765554   7899999864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=7.3e-18  Score=134.77  Aligned_cols=262  Identities=9%  Similarity=-0.013  Sum_probs=158.8

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEec----------CCCeEEEEeCCCCeEEEEEeeecC----CcceEEEEEeec
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPS   73 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~   73 (291)
                      .+.+.++..+..+  .++|+|+|++++++.          .++.|.+||..+.+.+..+.....    ......++++| 
T Consensus        41 ~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-  117 (361)
T 2oiz_A           41 GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-  117 (361)
T ss_dssp             CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-
T ss_pred             CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-
Confidence            3556677766666  899999999998875          367899999999998888775421    02256899999 


Q ss_pred             CCCCeEEEEeC--CCeEEEEECCCCCCCCCCccc-cccceEEEEEeecccCccceeccCCCCceeeeccc-Cccc-c---
Q 022870           74 IGLNKVISQGR--DGTVKCWDIENGGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETV-D---  145 (291)
Q Consensus        74 ~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~---  145 (291)
                       +|++|+++..  +++|.+||+.+++...    . +.........+.+............+....+.... .+.. .   
T Consensus       118 -dg~~l~v~n~~~~~~v~v~d~~~~~~~~----~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~  192 (361)
T 2oiz_A          118 -DGKFIVLQNASPATSIGIVDVAKGDYVE----DVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS  192 (361)
T ss_dssp             -TSSEEEEEEESSSEEEEEEETTTTEEEE----EEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC
T ss_pred             -CCCEEEEECCCCCCeEEEEECCCCcEEE----EEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc
Confidence             9999998864  5899999999886533    2 22211111111222111112222223333333322 1111 0   


Q ss_pred             -ccCCCCCC---cccCCCCCcEEEEecCCcCeEEEEeCCCccee--eEecccccCCCCCCCCCcceeeeeEEEecCCCCC
Q 022870          146 -TDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (291)
Q Consensus       146 -~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  219 (291)
                       ..+.....   +.+++++..+++.+  .++.+.++|+......  ..+......  .............+. |+|++  
T Consensus       193 ~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~p~g~~~~a-~~~dg--  265 (361)
T 2oiz_A          193 KQMFSVKDDPIFIAPALDKDKAHFVS--YYGNVYSADFSGDEVKVDGPWSLLNDE--DKAKNWVPGGYNLVG-LHRAS--  265 (361)
T ss_dssp             CCCSCTTTSCBCSCCEECSSEEEEEB--TTSEEEEEECSSSSCEEEEEEESCCHH--HHHTTCEECCSSCEE-EETTT--
T ss_pred             cceEcCCCCceEEEecccCCEEEEEe--CCCeEEEEEecCCCceecccccccCcc--ccccccccCCeeEEE-EecCC--
Confidence             11111111   45667776666533  4689999999765422  222100000  000000000011133 88873  


Q ss_pred             CceEEEeecC-----------CCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC--ce
Q 022870          220 GFVNVLAGYE-----------DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS--TV  286 (291)
Q Consensus       220 g~~~l~~g~~-----------dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~--~~  286 (291)
                       . .++++..           .+.|.+||+.+ .+.+..+..+.  +.+++|+|+|++|++++. +.|.+||.+++  ++
T Consensus       266 -~-~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~  339 (361)
T 2oiz_A          266 -G-RMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKL  339 (361)
T ss_dssp             -T-EEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEE
T ss_pred             -C-eEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCccee
Confidence             3 3443321           35899999998 88888888776  999999999999998886 99999999999  88


Q ss_pred             eeee
Q 022870          287 SHCV  290 (291)
Q Consensus       287 ~~~~  290 (291)
                      +.++
T Consensus       340 ~~~i  343 (361)
T 2oiz_A          340 LRTI  343 (361)
T ss_dssp             EEEE
T ss_pred             eEEe
Confidence            8764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.81  E-value=1.4e-18  Score=157.03  Aligned_cols=242  Identities=9%  Similarity=-0.004  Sum_probs=159.9

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeec---------CCcceEEEEEe-ecCCCCeE
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS---------AAHGIVSVATG-PSIGLNKV   79 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~~-~~~~~~~l   79 (291)
                      ....+..|. .+...+|+|+|+.|+.+ .++.|.+||+.... +..+..+.         ....+.+++|+ |  +|.+|
T Consensus       237 ~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p--dG~~l  311 (1045)
T 1k32_A          237 DLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPL--DGDLI  311 (1045)
T ss_dssp             SCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEEC--GGGCE
T ss_pred             cceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCC--CCCEE
Confidence            445566555 46788999999999887 58999999985443 33444321         01248999999 9  99999


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCccccccc-eEEEEEeecccCccceeccCCCCce-eeecccCccccccCCCCCC----
Q 022870           80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKD-CYEREVGETVDTDSLCDSK----  153 (291)
Q Consensus        80 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----  153 (291)
                      ++++ ++.|.+|++.+++...   ...... ......++ ......... ...... .++.......  .+..+..    
T Consensus       312 a~~~-~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~s-dg~~l~~~s-~~~~l~~~~d~~~~~~~--~l~~~~~~~~~  383 (1045)
T 1k32_A          312 AFVS-RGQAFIQDVSGTYVLK---VPEPLRIRYVRRGGD-TKVAFIHGT-REGDFLGIYDYRTGKAE--KFEENLGNVFA  383 (1045)
T ss_dssp             EEEE-TTEEEEECTTSSBEEE---CSCCSCEEEEEECSS-SEEEEEEEE-TTEEEEEEEETTTCCEE--ECCCCCCSEEE
T ss_pred             EEEE-cCEEEEEcCCCCceEE---ccCCCcceEEeeeEc-CCCeEEEEE-CCCceEEEEECCCCCce--EecCCccceee
Confidence            9887 7899999998765321   111111 22222222 111111111 111222 3344333222  2223433    


Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC---
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---  230 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d---  230 (291)
                      ++|+|+|+.++  .++.++.|++||+.+++....+.        +|.    ..+..+. |+|+   |+ +|++++.+   
T Consensus       384 ~~~SpDG~~la--~~~~~~~v~~~d~~tg~~~~~~~--------~~~----~~v~~~~-~SpD---G~-~la~~~~~~~~  444 (1045)
T 1k32_A          384 MGVDRNGKFAV--VANDRFEIMTVDLETGKPTVIER--------SRE----AMITDFT-ISDN---SR-FIAYGFPLKHG  444 (1045)
T ss_dssp             EEECTTSSEEE--EEETTSEEEEEETTTCCEEEEEE--------CSS----SCCCCEE-ECTT---SC-EEEEEEEECSS
T ss_pred             eEECCCCCEEE--EECCCCeEEEEECCCCceEEecc--------CCC----CCccceE-ECCC---CC-eEEEEecCccc
Confidence            89999998766  34457899999999988776665        342    3345565 9998   55 77776654   


Q ss_pred             -------CcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          231 -------GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       231 -------g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                             +.|++||+.+ ++ ...+..|...+..++|+|+|++|+.++.++..++|+.....
T Consensus       445 ~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~  504 (1045)
T 1k32_A          445 ETDGYVMQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN  504 (1045)
T ss_dssp             TTCSCCEEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             cccCCCCCeEEEEECCC-Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccc
Confidence                   4899999987 55 67788888889999999999999999998888888865443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=3.3e-19  Score=155.37  Aligned_cols=204  Identities=8%  Similarity=-0.026  Sum_probs=138.9

Q ss_pred             eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC-CcceEEEEEeecCCCCeEEEEeC---------CCeEEEE
Q 022870           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGR---------DGTVKCW   91 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~iw   91 (291)
                      .+++|+|+|++++++ .|++|++||+.+++....+..+.. ...+.+++|+|  ||++|++++.         ++.|++|
T Consensus        19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEEE
Confidence            378999999655554 699999999999988776665532 01388999999  9999998876         7899999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (291)
                      |+.+++....  ..+....        .                                 .++|+|||+.++.+  . +
T Consensus        96 d~~~g~~~~~--~~l~~~~--------~---------------------------------~~~~SPDG~~la~~--~-~  129 (719)
T 1z68_A           96 DLSNGEFVRG--NELPRPI--------Q---------------------------------YLCWSPVGSKLAYV--Y-Q  129 (719)
T ss_dssp             ETTTTEECCS--SCCCSSB--------C---------------------------------CEEECSSTTCEEEE--E-T
T ss_pred             ECCCCccccc--eecCccc--------c---------------------------------cceECCCCCEEEEE--E-C
Confidence            9998764210  0111000        0                                 05699999887643  2 6


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcc-------------eeeeeEEEecCCCCCCceEEEeecCCC-------
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR-------------GMCMAVQAYLPSKSQGFVNVLAGYEDG-------  231 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~p~~~~g~~~l~~g~~dg-------  231 (291)
                      +.|++||+.+++.......       ++.....             ....++. |+|+   |+ .|+.++.|.       
T Consensus       130 ~~i~~~~~~~g~~~~l~~~-------~~~~~v~~g~~~~v~~ee~~~~~~~~~-wSPD---G~-~la~~~~d~~~~~~~~  197 (719)
T 1z68_A          130 NNIYLKQRPGDPPFQITFN-------GRENKIFNGIPDWVYEEEMLATKYALW-WSPN---GK-FLAYAEFNDTDIPVIA  197 (719)
T ss_dssp             TEEEEESSTTSCCEECCCC-------CBTTTEEESSCCHHHHHHTTCSSCCEE-ECTT---SS-EEEEEEEECTTSCEEE
T ss_pred             CeEEEEeCCCCCcEEEecC-------CCcCCeEcccccceeeeecccCcccEE-ECCC---CC-EEEEEEECCCCCceEE
Confidence            8999999998876543221       2211000             1113565 9998   55 787776542       


Q ss_pred             ---------------------------cEEEEEccCCCCce--------eeccccccceeEEEeecCCCeeEEecCC---
Q 022870          232 ---------------------------SILVWDIRNPGIPL--------TAMKVHLEPVLCLSIDESCNGGISGGAD---  273 (291)
Q Consensus       232 ---------------------------~i~vwd~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~l~s~s~d---  273 (291)
                                                 .|++||+.+ ++..        ..+.+|...+.+++|+||++++++....   
T Consensus       198 ~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~  276 (719)
T 1z68_A          198 YSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQN  276 (719)
T ss_dssp             EEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTT
T ss_pred             eeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccC
Confidence                                       788999987 4432        2345688899999999998877774322   


Q ss_pred             -CeEEEEE----cCCCcee
Q 022870          274 -QKIVLYN----LDHSTVS  287 (291)
Q Consensus       274 -g~i~vw~----~~~~~~~  287 (291)
                       ..|.+||    +++++..
T Consensus       277 ~~~l~~~d~~~~~~~g~~~  295 (719)
T 1z68_A          277 VSVLSICDFREDWQTWDCP  295 (719)
T ss_dssp             EEEEEEEEECSSSSSEECC
T ss_pred             eEEEEEEcccCCCCCCceE
Confidence             3588899    7776543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=2.4e-17  Score=133.14  Aligned_cols=219  Identities=11%  Similarity=0.029  Sum_probs=145.4

Q ss_pred             CCCCCCceEEecCCccceeE-----EEEcCCCCEEEEecC-CC--eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCC
Q 022870            4 RPPPPDPVAVLRGHRASVTD-----VCFHQTKPILFAGTT-GG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG   75 (291)
Q Consensus         4 ~~~~~~~~~~l~~h~~~v~~-----l~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   75 (291)
                      .|..+..+..+..|......     .+|+|||++|+.++. +|  .|.+||+.+++.......+..  .+..+.|+|  +
T Consensus        16 ~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~--~~~~~~~sp--d   91 (388)
T 3pe7_A           16 DASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD--NTFGGFLSP--D   91 (388)
T ss_dssp             CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB--CSSSCEECT--T
T ss_pred             cCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC--CccceEEcC--C
Confidence            44556778888888877766     899999999988877 67  488899998887765555543  255778999  9


Q ss_pred             CCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcc
Q 022870           76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDD  155 (291)
Q Consensus        76 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (291)
                      ++.|+.++.++.|++||+.+++...  +............                                      ..
T Consensus        92 g~~l~~~~~~~~l~~~d~~~g~~~~--~~~~~~~~~~~~~--------------------------------------~~  131 (388)
T 3pe7_A           92 DDALFYVKDGRNLMRVDLATLEENV--VYQVPAEWVGYGT--------------------------------------WV  131 (388)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEE--EEECCTTEEEEEE--------------------------------------EE
T ss_pred             CCEEEEEeCCCeEEEEECCCCccee--eeechhhcccccc--------------------------------------ee
Confidence            9999999999999999999876422  2222221111110                                      11


Q ss_pred             cCCCCCcEEEE--------------------ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecC
Q 022870          156 VPAEGPKYMAV--------------------AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (291)
Q Consensus       156 ~~~~~~~~~~~--------------------~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  215 (291)
                      ++|++..++..                    ....+..|.+||+.+++......         +    ...+..+. |+|
T Consensus       132 ~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---------~----~~~~~~~~-~sp  197 (388)
T 3pe7_A          132 ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ---------E----NQWLGHPI-YRP  197 (388)
T ss_dssp             ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE---------E----SSCEEEEE-EET
T ss_pred             ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec---------C----CccccccE-ECC
Confidence            34555443321                    12345789999999887544433         1    22345565 999


Q ss_pred             -CCCCCceEEEeecC------CCcEEEEEccCCCCceeeccccc--cceeEEEeecCCCeeEEecCC-----CeEEEEEc
Q 022870          216 -SKSQGFVNVLAGYE------DGSILVWDIRNPGIPLTAMKVHL--EPVLCLSIDESCNGGISGGAD-----QKIVLYNL  281 (291)
Q Consensus       216 -~~~~g~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~d-----g~i~vw~~  281 (291)
                       +   |+ .|+....      ...|.++|... + ....+..+.  ..+...+|+|+|+.|+..+.+     ..|++||+
T Consensus       198 ~d---g~-~l~~~~~~~~~~~~~~l~~~d~~~-~-~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (388)
T 3pe7_A          198 YD---DS-TVAFCHEGPHDLVDARMWLINEDG-T-NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP  271 (388)
T ss_dssp             TE---EE-EEEEEECSCTTTSSCSEEEEETTS-C-CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred             CC---CC-EEEEEEecCCCCCcceEEEEeCCC-C-ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence             7   54 5655444      33788888764 3 334444444  367889999999988654432     24999999


Q ss_pred             CCCce
Q 022870          282 DHSTV  286 (291)
Q Consensus       282 ~~~~~  286 (291)
                      .+++.
T Consensus       272 ~~g~~  276 (388)
T 3pe7_A          272 ETLEN  276 (388)
T ss_dssp             TTCCE
T ss_pred             CCCce
Confidence            98874

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.79  E-value=1.1e-17  Score=151.35  Aligned_cols=238  Identities=11%  Similarity=0.084  Sum_probs=161.6

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC-CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      ...+.+|...+.++.|+++ .++++++.|+.+.||.+.. +.....+..+.   .+...+|+|  +|+.|+.+. ++.|.
T Consensus       196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~Sp--DG~~la~~~-~~~i~  268 (1045)
T 1k32_A          196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNT--DGRRILFSK-GGSIY  268 (1045)
T ss_dssp             EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEE--SSSCEEEEE-TTEEE
T ss_pred             eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcC--CCCEEEEEe-CCEEE
Confidence            4556889999999999998 6778888899999997653 33444555443   266779999  999888874 89999


Q ss_pred             EEECCCCCCCCCCccccccc-------------eEEEEEee-cccCccceeccCCCCceeeecccCccccccCCCCCC--
Q 022870           90 CWDIENGGLSSNPSLTIKTN-------------SYHFCKLS-LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--  153 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~-------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  153 (291)
                      +||+......     .+...             ......++ +.........  ......++........  +..+..  
T Consensus       269 ~~d~~~~~l~-----~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~--~~~~~~~~  339 (1045)
T 1k32_A          269 IFNPDTEKIE-----KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLK--VPEPLRIR  339 (1045)
T ss_dssp             EECTTTCCEE-----ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEE--CSCCSCEE
T ss_pred             EecCCceEee-----eeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEE--ccCCCcce
Confidence            9998443221     11110             12233344 3333222222  2333444444333221  222222  


Q ss_pred             ---cccCCCCCcEEEEecCCcCeEE-EEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC
Q 022870          154 ---DDVPAEGPKYMAVAGEQLSEVE-IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (291)
Q Consensus       154 ---~~~~~~~~~~~~~~g~~d~~i~-~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (291)
                         ++|+ +|+.++. ++. ++.+. +||+..++.. .+.        +|    ...+..+. |+|+   |+ +|++++.
T Consensus       340 ~~~~~~s-dg~~l~~-~s~-~~~l~~~~d~~~~~~~-~l~--------~~----~~~~~~~~-~SpD---G~-~la~~~~  398 (1045)
T 1k32_A          340 YVRRGGD-TKVAFIH-GTR-EGDFLGIYDYRTGKAE-KFE--------EN----LGNVFAMG-VDRN---GK-FAVVAND  398 (1045)
T ss_dssp             EEEECSS-SEEEEEE-EET-TEEEEEEEETTTCCEE-ECC--------CC----CCSEEEEE-ECTT---SS-EEEEEET
T ss_pred             EEeeeEc-CCCeEEE-EEC-CCceEEEEECCCCCce-Eec--------CC----ccceeeeE-ECCC---CC-EEEEECC
Confidence               7899 8876664 333 67888 9999876543 232        22    23456676 9998   55 8999999


Q ss_pred             CCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC----------eEEEEEcCCCce
Q 022870          230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ----------KIVLYNLDHSTV  286 (291)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg----------~i~vw~~~~~~~  286 (291)
                      ++.|++||+.+ ++....+.+|...+.+++|+|+|++|++++.++          .|++||+.+++.
T Consensus       399 ~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~  464 (1045)
T 1k32_A          399 RFEIMTVDLET-GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  464 (1045)
T ss_dssp             TSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             CCeEEEEECCC-CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence            99999999998 777777778999999999999999998887654          899999998873

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=1.5e-17  Score=133.35  Aligned_cols=256  Identities=9%  Similarity=0.008  Sum_probs=150.6

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCC-CCeEEEEEeeecCCcceEEEEEeecCCCCe--EEEEe-----------
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNK--VISQG-----------   83 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~s~~-----------   83 (291)
                      ...+..++|+|+|++|++++.+ .|.+|++. +++.......... ....+++|+|  +|++  ++++.           
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADT--NTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTS--CCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECC--CCCEEEEEEecCCcceecccee
Confidence            3468899999999999988887 99999987 7776544332111 1145689999  9884  45553           


Q ss_pred             --CCCeEEEEECCC-CCCCCCCcccc---ccceEEEEEeecccCccceeccCCCCceeeecc-cCcccc-ccC--CC-CC
Q 022870           84 --RDGTVKCWDIEN-GGLSSNPSLTI---KTNSYHFCKLSLVKEPYANAKQANEPKDCYERE-VGETVD-TDS--LC-DS  152 (291)
Q Consensus        84 --~dg~i~iwd~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~--~~-~~  152 (291)
                        .+|++.+|++.. ++... .....   .........+++.................|++. ..+... ...  .. ..
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEK-NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEE-EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             ecCCceEEEEccCCCCcCcc-eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence              689999999974 43221 01110   122344445555543332222233456667776 333211 111  11 11


Q ss_pred             C---cccCCCCCcEEEEecCCcCeEEEEeCC--Ccceee---EecccccCCCCCCCCC--cceeeeeEEE-ecCCCCCCc
Q 022870          153 K---DDVPAEGPKYMAVAGEQLSEVEIWDLN--TAERCT---RLHQNSCGGSPNFSSK--GRGMCMAVQA-YLPSKSQGF  221 (291)
Q Consensus       153 ~---~~~~~~~~~~~~~~g~~d~~i~~wd~~--~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~p~~~~g~  221 (291)
                      .   ++|+|+|+.+++ ++..++.|.+|++.  +++...   .+.... ....++...  ....+..+ + |+|+   |+
T Consensus       194 ~p~~~~~spdg~~l~v-~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~i-~~~spd---G~  267 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYA-LMEAGNRICEYVIDPATHMPVYTHHSFPLIP-PGIPDRDPETGKGLYRADV-CALTFS---GK  267 (365)
T ss_dssp             CEEEEEECTTSSEEEE-EETTTTEEEEEEECTTTCCEEEEEEEEESSC-TTCCCBCTTTSSBSEEEEE-EEECTT---SS
T ss_pred             CCCEeEECCCCCEEEE-EECCCCeEEEEEEeCCCCcEEEccceEEcCC-CCcCCcccccccccccccE-EEECCC---CC
Confidence            2   899999987665 45557899999765  454321   222100 000011000  00023444 6 8998   55


Q ss_pred             eEEEeecCC-C-----cEEEEEccCCCCcee---eccccccceeEEEeec---CCCeeEEecCC-CeEEEEEcCCCc
Q 022870          222 VNVLAGYED-G-----SILVWDIRNPGIPLT---AMKVHLEPVLCLSIDE---SCNGGISGGAD-QKIVLYNLDHST  285 (291)
Q Consensus       222 ~~l~~g~~d-g-----~i~vwd~~~~~~~~~---~~~~h~~~v~~~~~~~---~~~~l~s~s~d-g~i~vw~~~~~~  285 (291)
                       +|++++.+ .     .|.+|++...++...   ....+...+..++|+|   +|++|++++.+ +.|++|+++...
T Consensus       268 -~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          268 -YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             -EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             -EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence             66655432 2     899999963255433   1333455678899999   89999888764 899999998763

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.79  E-value=3.1e-17  Score=129.75  Aligned_cols=232  Identities=12%  Similarity=0.064  Sum_probs=147.1

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeE-EEEeCCCeEEEEECCCCCCCCCCcccccc-
Q 022870           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKT-  108 (291)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-  108 (291)
                      .++++++.++.|.+||+.+++.+..+........+..++|+|  +++++ ++++.++.|.+||+.+++...  .+.... 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~--~~~~~~~   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLG--RIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEE--EEECCBT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC--CCCEEEEEeCCCCeEEEEECCCCCeEe--eEEcCCc
Confidence            478999999999999999999888776443100378999999  88765 456668899999998876533  111111 


Q ss_pred             c----eEEEEEeecccCccceecc-----------CCCCceeeecccCccccccCCCCCC--cccCCCCCcEEEEecCCc
Q 022870          109 N----SYHFCKLSLVKEPYANAKQ-----------ANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus       109 ~----~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d  171 (291)
                      .    ......+++..........           .......++............+...  ++|+|+++.++++    +
T Consensus        78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~----~  153 (337)
T 1pby_B           78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL----G  153 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE----S
T ss_pred             ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe----C
Confidence            0    1111222222221111110           2345566666554433222122212  8899999877753    4


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC--------------------
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--------------------  231 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--------------------  231 (291)
                      +.|++||+.+++....+..        +... ..    +. |+|+   |..+++++..++                    
T Consensus       154 ~~i~~~d~~~~~~~~~~~~--------~~~~-~~----~~-~s~d---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (337)
T 1pby_B          154 RDLHVMDPEAGTLVEDKPI--------QSWE-AE----TY-AQPD---VLAVWNQHESSGVMATPFYTARKDIDPADPTA  216 (337)
T ss_dssp             SSEEEEETTTTEEEEEECS--------TTTT-TT----TB-CCCB---CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred             CeEEEEECCCCcEeeeeec--------cccC-CC----ce-eCCC---ccEEeeeccCCCceeeeeeccccccccccccc
Confidence            7899999999988777662        1110 11    12 7887   331333333333                    


Q ss_pred             ---cEEEEEccCCCCce-eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          232 ---SILVWDIRNPGIPL-TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       232 ---~i~vwd~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                         .|.+||+.+ ++.. ..+..+...+.+++|+|++++|+++  ++.|++||+++++.+..+
T Consensus       217 ~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~  276 (337)
T 1pby_B          217 YRTGLLTMDLET-GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             EEEEEEEEETTT-CCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             cccceEEEeCCC-CCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee
Confidence               468999998 5443 3345566778899999999998888  799999999998876543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=2e-16  Score=125.01  Aligned_cols=248  Identities=10%  Similarity=0.035  Sum_probs=157.5

Q ss_pred             ccceeEEEEcCCCCEEEEecCC------------------------CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeec
Q 022870           18 RASVTDVCFHQTKPILFAGTTG------------------------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS   73 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~   73 (291)
                      -+.+.+++++|+|+++++...+                        ++|.+||..+++.+..+... .......++++| 
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~p~gia~d~-  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN-LFYLPHGLSIDT-  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT-TCSSEEEEEECT-
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC-ccCCceEEEECC-
Confidence            4679999999999999888777                        47999999888887655421 113488999999 


Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCCCCCCCccccc-----------cceEEEEEeecccCccceecc-CCCCceeeecccC
Q 022870           74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIK-----------TNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVG  141 (291)
Q Consensus        74 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  141 (291)
                       +|+++++...++.|++||.......   +..+.           ........+.+.......+.. ....+..++....
T Consensus       101 -~g~l~v~d~~~~~v~~~~~~g~~~~---~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~  176 (329)
T 3fvz_A          101 -DGNYWVTDVALHQVFKLDPHSKEGP---LLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK  176 (329)
T ss_dssp             -TSCEEEEETTTTEEEEECTTCSSCC---SEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC
T ss_pred             -CCCEEEEECCCCEEEEEeCCCCeEE---EEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC
Confidence             9898888888999999998654211   11111           111222222221111111111 2233334442211


Q ss_pred             ccccccCCC--------C---C-CcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeee
Q 022870          142 ETVDTDSLC--------D---S-KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA  209 (291)
Q Consensus       142 ~~~~~~~~~--------~---~-~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (291)
                      ........+        +   . .++++|++..+++ +...++.|++||..+++.+..+...      .+    ...+..
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v-~d~~~~~I~~~~~~~G~~~~~~~~~------~~----~~~~~~  245 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV-ADRENGRIQCFKTDTKEFVREIKHA------SF----GRNVFA  245 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE-EETTTTEEEEEETTTCCEEEEECCT------TT----TTCEEE
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE-EECCCCEEEEEECCCCcEEEEEecc------cc----CCCcce
Confidence            111111001        1   1 1899999556665 4556899999999988888877521      12    223455


Q ss_pred             EEEecCCC---CCCceEEEeecCCCcEEEEEccCCCCceeec---cccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          210 VQAYLPSK---SQGFVNVLAGYEDGSILVWDIRNPGIPLTAM---KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       210 ~~~~~p~~---~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      +. |+|..   .+|. ..++...+..|++||..+ ++.+..+   .++...+.+|+++++|.++++...++.|++|+++.
T Consensus       246 ~~-~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          246 IS-YIPGFLFAVNGK-PYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EE-EETTEEEEEECC-CCTTCSCCCCEEEEETTT-CCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             ee-ecCCEEEEeCCC-EEeccCCCcEEEEEEcCC-CeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            65 88710   0022 233344566999999988 7777776   35667899999999998889999999999999876


Q ss_pred             Cc
Q 022870          284 ST  285 (291)
Q Consensus       284 ~~  285 (291)
                      ..
T Consensus       323 ~~  324 (329)
T 3fvz_A          323 KM  324 (329)
T ss_dssp             CS
T ss_pred             cc
Confidence            44

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.75  E-value=1e-17  Score=146.01  Aligned_cols=234  Identities=7%  Similarity=-0.038  Sum_probs=141.2

Q ss_pred             CceEEecCCcc---ceeEEEEcCCCCEEEEecC---------CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCC
Q 022870            9 DPVAVLRGHRA---SVTDVCFHQTKPILFAGTT---------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL   76 (291)
Q Consensus         9 ~~~~~l~~h~~---~v~~l~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   76 (291)
                      ++...+.+|..   .|.+++|||||++|++++.         |+.|++||+.+++.+..... .  ..+..++|+|  ||
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~--~~~~~~~~SP--DG  121 (719)
T 1z68_A           47 QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-P--RPIQYLCWSP--VG  121 (719)
T ss_dssp             CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-C--SSBCCEEECS--ST
T ss_pred             cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-C--cccccceECC--CC
Confidence            44444554544   3999999999999998876         78999999998876211111 1  3388999999  99


Q ss_pred             CeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCC-CCCcc
Q 022870           77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-DSKDD  155 (291)
Q Consensus        77 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  155 (291)
                      +.|+.+. ++.|++||+.+++...  + +......                      .++.-...........+ ...++
T Consensus       122 ~~la~~~-~~~i~~~~~~~g~~~~--l-~~~~~~~----------------------~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A          122 SKLAYVY-QNNIYLKQRPGDPPFQ--I-TFNGREN----------------------KIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             TCEEEEE-TTEEEEESSTTSCCEE--C-CCCCBTT----------------------TEEESSCCHHHHHHTTCSSCCEE
T ss_pred             CEEEEEE-CCeEEEEeCCCCCcEE--E-ecCCCcC----------------------CeEcccccceeeeecccCcccEE
Confidence            9999886 7899999998775421  0 0000000                      00000000000000000 01177


Q ss_pred             cCCCCCcEEEEecCC--------------------------------cCeEEEEeCCCccee--eEecccccCCCCCCCC
Q 022870          156 VPAEGPKYMAVAGEQ--------------------------------LSEVEIWDLNTAERC--TRLHQNSCGGSPNFSS  201 (291)
Q Consensus       156 ~~~~~~~~~~~~g~~--------------------------------d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~  201 (291)
                      |+|||+.++..+...                                +..|++||+.+++..  ..+...      ....
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~------~~~~  249 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP------AMIA  249 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC------HHHH
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC------ccCC
Confidence            999998776533211                                127899999987753  122100      0000


Q ss_pred             CcceeeeeEEEecCCCCCCceEEEeecCC----CcEEEEE----ccCCCCceeec----ccccccee-----EEEeecCC
Q 022870          202 KGRGMCMAVQAYLPSKSQGFVNVLAGYED----GSILVWD----IRNPGIPLTAM----KVHLEPVL-----CLSIDESC  264 (291)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~g~~~l~~g~~d----g~i~vwd----~~~~~~~~~~~----~~h~~~v~-----~~~~~~~~  264 (291)
                      .....+..+. |+|+   ++ ++++....    ..|++||    ..+ ++....+    .+|...+.     .+.|+|+|
T Consensus       250 ~~~~~~~~~~-~SpD---~~-~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          250 SSDYYFSWLT-WVTD---ER-VCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             TSCEEEEEEE-ESSS---SE-EEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CCcceEEEeE-EeCC---Ce-EEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccCCceEccccCCccEECCCC
Confidence            1245677787 9998   44 56653322    3588999    766 5555555    46777777     88999999


Q ss_pred             CeeEE--ecCCC--eEEEEEcCCCc
Q 022870          265 NGGIS--GGADQ--KIVLYNLDHST  285 (291)
Q Consensus       265 ~~l~s--~s~dg--~i~vw~~~~~~  285 (291)
                      +.|+.  ...+|  .|.+|++.+++
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             CeEEEEEEccCCceEEEEEECCCCc
Confidence            96544  44555  57777877665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.74  E-value=2.5e-16  Score=137.56  Aligned_cols=249  Identities=8%  Similarity=-0.028  Sum_probs=154.1

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCC-c--ceEEEEEeecCCCCeEEEEeCC---------
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-H--GIVSVATGPSIGLNKVISQGRD---------   85 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~--~v~~~~~~~~~~~~~l~s~~~d---------   85 (291)
                      .....+++|+|+|.+++++  |++|++||+.++++...+..|... .  ....++|+|  ||++|+.++.+         
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC--CCCEEEEEECCeeeEEEccc
Confidence            3446789999999988886  899999999999988777766531 1  124488999  99999988876         


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCC--------------
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD--------------  151 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  151 (291)
                      +.+.+||+.+++...  + ...........+++.+......  ....+.+++............++              
T Consensus        92 ~~~~~~d~~~~~~~~--l-~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~  166 (740)
T 4a5s_A           92 ASYDIYDLNKRQLIT--E-ERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (740)
T ss_dssp             EEEEEEETTTTEECC--S-SCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             eEEEEEECCCCcEEE--c-ccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence            566799999887533  2 2222334555666666554433  22333344443333222111111              


Q ss_pred             -------CCcccCCCCCcEEEEecC----------------------------------CcCeEEEEeCCC---cc--ee
Q 022870          152 -------SKDDVPAEGPKYMAVAGE----------------------------------QLSEVEIWDLNT---AE--RC  185 (291)
Q Consensus       152 -------~~~~~~~~~~~~~~~~g~----------------------------------~d~~i~~wd~~~---~~--~~  185 (291)
                             ..+.|||||+.++..+..                                  ....|++||+.+   ++  ..
T Consensus       167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~  246 (740)
T 4a5s_A          167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS  246 (740)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred             chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence                   116799999877654211                                  012578888887   63  22


Q ss_pred             eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee----cCCCcEEEEEccCCCC----c--eeec--ccccc
Q 022870          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG----YEDGSILVWDIRNPGI----P--LTAM--KVHLE  253 (291)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g----~~dg~i~vwd~~~~~~----~--~~~~--~~h~~  253 (291)
                      ..+...      .........+..+. |+|+   |+ .++..    ..+..|++||+.+ ++    +  +..+  ..|..
T Consensus       247 ~~l~~~------~~~~~~~~~~~~~~-wspd---g~-~~~~~~~r~~~~~~i~~~d~~t-g~~~~~~~~~~~l~~~~~~~  314 (740)
T 4a5s_A          247 IQITAP------ASMLIGDHYLCDVT-WATQ---ER-ISLQWLRRIQNYSVMDICDYDE-SSGRWNCLVARQHIEMSTTG  314 (740)
T ss_dssp             EEECCC------HHHHTSCEEEEEEE-EEET---TE-EEEEEEESSTTEEEEEEEEEET-TTTEEEECGGGCEEEECSSS
T ss_pred             EEecCC------ccCCCCCeEEEEEE-EeCC---Ce-EEEEEeCCCCCEEEEEEEECCC-CccccceeEEEEeeeccCCc
Confidence            233210      00001245677787 9998   55 44433    2344799999998 55    2  2222  45666


Q ss_pred             cee-----EEEeecCCCeeE-EecC-C--CeEEEEEcCCCcee
Q 022870          254 PVL-----CLSIDESCNGGI-SGGA-D--QKIVLYNLDHSTVS  287 (291)
Q Consensus       254 ~v~-----~~~~~~~~~~l~-s~s~-d--g~i~vw~~~~~~~~  287 (291)
                      .|.     ...|+|||+.|+ ..+. +  ..|++||+++++..
T Consensus       315 ~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          315 WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT  357 (740)
T ss_dssp             CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred             eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence            655     789999999877 5553 3  46888998876644

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.73  E-value=1e-15  Score=122.42  Aligned_cols=231  Identities=9%  Similarity=0.073  Sum_probs=135.1

Q ss_pred             CCCCEEEEec----CCCeEEEEeC--CCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC----CeEEEEECCCC-
Q 022870           28 QTKPILFAGT----TGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD----GTVKCWDIENG-   96 (291)
Q Consensus        28 ~~~~~l~s~~----~dg~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~-   96 (291)
                      +...+++.|+    .++.|.+|++  .+++.......+.  .....++|+|  ++++|++++.+    +.|.+|++... 
T Consensus        11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~--~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~   86 (361)
T 3scy_A           11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV--ANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEK   86 (361)
T ss_dssp             GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC--SCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred             CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC--CCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence            3344556663    4678999866  4555433322244  3478899999  99999998886    79999998763 


Q ss_pred             -CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcccccc-----CC-----------CCCC-cccCC
Q 022870           97 -GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-----SL-----------CDSK-DDVPA  158 (291)
Q Consensus        97 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----------~~~~-~~~~~  158 (291)
                       +...  +..........+.+.+.................|++.........     ..           .|.. ++|+|
T Consensus        87 g~~~~--~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp  164 (361)
T 3scy_A           87 GTLHL--LNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP  164 (361)
T ss_dssp             TEEEE--EEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred             CcEEE--eeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence             2211  112211111112222222222223334455666766543221110     01           1111 89999


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCCcce------e------eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNTAER------C------TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (291)
                      +|+.+++ ++..++.|.+|++.....      +      .....       .    .......+. |+|+   |+ ++++
T Consensus       165 dg~~l~~-~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-------~----~~~~~~~~~-~spd---g~-~l~v  227 (361)
T 3scy_A          165 DGKYLLA-DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-------A----PGSGPRHLI-FNSD---GK-FAYL  227 (361)
T ss_dssp             TSSEEEE-EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-------C----TTCCEEEEE-ECTT---SS-EEEE
T ss_pred             CCCEEEE-EeCCCCEEEEEEEcCCCCcccccceeecccccceec-------C----CCCCCeEEE-EcCC---CC-EEEE
Confidence            9987765 455578999998875432      1      11111       1    112244565 9998   55 5555


Q ss_pred             ec-CCCcEEEEEccCCCCc--eeec---cccccceeEEEeecCCCeeEEecC--CCeEEEEEcC
Q 022870          227 GY-EDGSILVWDIRNPGIP--LTAM---KVHLEPVLCLSIDESCNGGISGGA--DQKIVLYNLD  282 (291)
Q Consensus       227 g~-~dg~i~vwd~~~~~~~--~~~~---~~h~~~v~~~~~~~~~~~l~s~s~--dg~i~vw~~~  282 (291)
                      ++ .++.|.+||+.+ +..  +..+   ..+...+..++|+|+|++|+++..  ++.|.+|+++
T Consensus       228 ~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          228 INEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             EcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            54 789999999986 433  2222   233345689999999998866554  5899999996

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=1.1e-14  Score=112.73  Aligned_cols=241  Identities=8%  Similarity=0.070  Sum_probs=146.1

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeec----CCcceEEEEEe-ecCCCCeEEEEeC-CCeEE
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS----AAHGIVSVATG-PSIGLNKVISQGR-DGTVK   89 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~-~~~~~~~l~s~~~-dg~i~   89 (291)
                      +|-..+.++++++++.++++...++.|.+||.. ++.+..+....    ....+..+++. +  ++.++++... ++.|.
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~--~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN--SGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT--TTEEEEEECGGGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC--CCeEEEEcCCCCCEEE
Confidence            455678999999999988888889999999976 66666654311    11247899995 5  6555555533 78999


Q ss_pred             EEECCCCCCCCCCcccc-ccceEEEEEeecccCccceec-cCCCCceeeecccCccccccCCCCCC----cccCCCCCcE
Q 022870           90 CWDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAK-QANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (291)
                      +||. +++...  .+.. .........+....  ..... ........++.............+..    ++++++|. +
T Consensus       104 ~~d~-~g~~~~--~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-l  177 (286)
T 1q7f_A          104 IYNQ-YGQFVR--KFGATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-I  177 (286)
T ss_dssp             EECT-TSCEEE--EECTTTCSCEEEEEECTTS--CEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-E
T ss_pred             EECC-CCcEEE--EecCccCCCceEEEEeCCC--CEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-E
Confidence            9994 343221  1111 11122222222221  11111 12233344443222111111111111    89999986 4


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC-cEEEEEccCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRNPG  242 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg-~i~vwd~~~~~  242 (291)
                      ++ +...++.|++||.. ++.+..+...      ++    ...+..++ +.|+   |+ ++++...++ .|.+||..  +
T Consensus       178 ~v-~~~~~~~i~~~~~~-g~~~~~~~~~------g~----~~~p~~i~-~d~~---G~-l~v~~~~~~~~i~~~~~~--g  238 (286)
T 1q7f_A          178 FI-SDNRAHCVKVFNYE-GQYLRQIGGE------GI----TNYPIGVG-INSN---GE-ILIADNHNNFNLTIFTQD--G  238 (286)
T ss_dssp             EE-EEGGGTEEEEEETT-CCEEEEESCT------TT----SCSEEEEE-ECTT---CC-EEEEECSSSCEEEEECTT--S
T ss_pred             EE-EECCCCEEEEEcCC-CCEEEEEccC------Cc----cCCCcEEE-ECCC---CC-EEEEeCCCCEEEEEECCC--C
Confidence            44 44457899999985 4555555410      11    13456676 9887   54 677776675 99999964  6


Q ss_pred             Cceeecccccc--ceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          243 IPLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       243 ~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      +.+..+..+..  .+.+++++|+|+++++ +.|+.|++|++....
T Consensus       239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            66666665433  4789999999987777 569999999987643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.72  E-value=2e-16  Score=134.65  Aligned_cols=195  Identities=10%  Similarity=-0.022  Sum_probs=127.1

Q ss_pred             cceEEEEEeecCCCCeEEEEeC-CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccC---CCCceeeec
Q 022870           63 HGIVSVATGPSIGLNKVISQGR-DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA---NEPKDCYER  138 (291)
Q Consensus        63 ~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  138 (291)
                      .+|.+++|+|  ||++|++++. ||+++||++.+++...  +............+++.  ........   .....+|.+
T Consensus        22 ~~~~~~~~~~--DG~~la~~s~~~g~~~lw~~~~g~~~~--lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           22 VEKYSLQGVV--DGDKLLVVGFSEGSVNAYLYDGGETVK--LNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             SCEEEEEEEE--TTTEEEEEEEETTEEEEEEEETTEEEE--CCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred             cchheeecCC--CCCeEEEEEccCCceeEEEEcCCCcEe--eecccccccccccCCCC--eEEEEeccCCCCcceEEEEE
Confidence            4599999999  9999998877 9999999986654321  11111112222222222  11111111   112234333


Q ss_pred             cc--CccccccCCCCCC---cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEe
Q 022870          139 EV--GETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY  213 (291)
Q Consensus       139 ~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (291)
                      +.  ..... .+.....   .+|+|+++.+++++++.++ +.+||+.+++......        .+     .  .++. |
T Consensus        96 ~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~--------~~-----~--~~~~-~  157 (582)
T 3o4h_A           96 NTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELAR--------LP-----G--FGFV-S  157 (582)
T ss_dssp             ETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEE--------ES-----S--CEEE-E
T ss_pred             eccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeec--------CC-----C--ceEE-E
Confidence            32  21111 1111112   7899999887776776554 5599999887654443        11     1  4555 9


Q ss_pred             cCCCCCCceEEEeecCC----CcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC--eEEEEEcCCCcee
Q 022870          214 LPSKSQGFVNVLAGYED----GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ--KIVLYNLDHSTVS  287 (291)
Q Consensus       214 ~p~~~~g~~~l~~g~~d----g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~i~vw~~~~~~~~  287 (291)
                      +|+   |+ +|++++.+    +.|++||+.+ ++. ..+..|...+.+++|+|||+.|++++.++  .|++||+++++..
T Consensus       158 spD---G~-~la~~~~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          158 DIR---GD-LIAGLGFFGGGRVSLFTSNLSS-GGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             EEE---TT-EEEEEEEEETTEEEEEEEETTT-CCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             CCC---CC-EEEEEEEcCCCCeEEEEEcCCC-CCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            998   55 78877766    7899999986 443 46778888999999999999999888888  8999999988765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.71  E-value=2.2e-16  Score=127.79  Aligned_cols=256  Identities=9%  Similarity=-0.022  Sum_probs=145.9

Q ss_pred             CCCCCCceEEecCCccc-----eeEEEEcCCCCEEEEecC---CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCC
Q 022870            4 RPPPPDPVAVLRGHRAS-----VTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG   75 (291)
Q Consensus         4 ~~~~~~~~~~l~~h~~~-----v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   75 (291)
                      .+..++.+..+..+...     +..++|+|+|++|+....   +..|.+||+.+++.......+.  .....+.|+|  +
T Consensus        16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~sp--d   91 (396)
T 3c5m_A           16 DSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG--DNTFGGFIST--D   91 (396)
T ss_dssp             CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC--BCTTTCEECT--T
T ss_pred             cCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC--CccccceECC--C
Confidence            44555667777766544     788999999999876643   3478899998887654332222  1133478999  9


Q ss_pred             CCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEE-EEee--------------cccCcccee----c----cCCCC
Q 022870           76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF-CKLS--------------LVKEPYANA----K----QANEP  132 (291)
Q Consensus        76 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~----~----~~~~~  132 (291)
                      |++|+.++.++.|++||+.+++...  +.......... ..+.              ....+....    .    .....
T Consensus        92 g~~l~~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~  169 (396)
T 3c5m_A           92 ERAFFYVKNELNLMKVDLETLEEQV--IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR  169 (396)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEE--EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred             CCEEEEEEcCCcEEEEECCCCCcEE--EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence            9999999999999999998875422  22212111000 0000              111111110    0    11122


Q ss_pred             ceeeecccCccccccCCCCCC---cccCC-CCCcEEEEecCCc----CeEEEEeCCCcceeeEecccccCCCCCCCCCcc
Q 022870          133 KDCYEREVGETVDTDSLCDSK---DDVPA-EGPKYMAVAGEQL----SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR  204 (291)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~g~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (291)
                      +..+++......... .....   +.|+| ++..+++++....    ..|.+||+..++. ..+.        .+.  ..
T Consensus       170 l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~--------~~~--~~  237 (396)
T 3c5m_A          170 LIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIK--------EHA--EG  237 (396)
T ss_dssp             EEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESS--------CCC--TT
T ss_pred             EEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEee--------ccC--CC
Confidence            333444443321111 11111   78999 7766665443222    4689999876543 2232        110  12


Q ss_pred             eeeeeEEEecCCCCCCceEEEeecCC-----CcEEEEEccCCCCceeeccccccceeEEEeec-CCCeeEEec-------
Q 022870          205 GMCMAVQAYLPSKSQGFVNVLAGYED-----GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGG-------  271 (291)
Q Consensus       205 ~~~~~~~~~~p~~~~g~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s-------  271 (291)
                      ..+..+. |+|+   |+ .|+.++.+     +.|++||+.+ ++.... ..... .. +.|+| +++++++++       
T Consensus       238 ~~~~~~~-~spd---g~-~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l-~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~  308 (396)
T 3c5m_A          238 ESCTHEF-WIPD---GS-AMAYVSYFKGQTDRVIYKANPET-LENEEV-MVMPP-CS-HLMSNFDGSLMVGDGCDAPVDV  308 (396)
T ss_dssp             EEEEEEE-ECTT---SS-CEEEEEEETTTCCEEEEEECTTT-CCEEEE-EECCS-EE-EEEECSSSSEEEEEECCC----
T ss_pred             ccccceE-ECCC---CC-EEEEEecCCCCccceEEEEECCC-CCeEEe-eeCCC-CC-CCccCCCCceEEEecCCcceee
Confidence            2455566 9998   44 55544332     4499999987 543322 21112 23 88999 999888754       


Q ss_pred             ---------CCCeEEEEEcCCCce
Q 022870          272 ---------ADQKIVLYNLDHSTV  286 (291)
Q Consensus       272 ---------~dg~i~vw~~~~~~~  286 (291)
                               .++.|++||+.+++.
T Consensus       309 ~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          309 ADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             ------CCCCCCEEEEEETTTTBC
T ss_pred             ccccccccCCCCcEEEEecccCce
Confidence                     347899999988764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=1.8e-15  Score=122.10  Aligned_cols=252  Identities=12%  Similarity=-0.022  Sum_probs=145.7

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEE--eecCCCCeEEEE-----
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT--GPSIGLNKVISQ-----   82 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~s~-----   82 (291)
                      ......+|...+..++|+|||+.|+.++.++.|++||+.+++.......+...  +....|  +|  ++.+++..     
T Consensus        72 ~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~--~~~~~~~~~~--dg~~l~~~~~~~~  147 (388)
T 3pe7_A           72 ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEW--VGYGTWVANS--DCTKLVGIEIRRE  147 (388)
T ss_dssp             EEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE--EEEEEEEECT--TSSEEEEEEEEGG
T ss_pred             eEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhc--ccccceeECC--CCCeeccccccCc
Confidence            33444556666667899999999999999999999999998877766655432  444444  67  87877642     


Q ss_pred             -----------------eCCCeEEEEECCCCCCCCCCccccccceEEEEEeec-ccCccceeccCC---CCceeeecccC
Q 022870           83 -----------------GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL-VKEPYANAKQAN---EPKDCYEREVG  141 (291)
Q Consensus        83 -----------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~  141 (291)
                                       ..+..|.+||+.+++...  +. ..........+++ ............   ....++.++..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~--l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (388)
T 3pe7_A          148 DWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV--IL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED  224 (388)
T ss_dssp             GCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE--EE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred             ccccccccchhhhhhccCCcceEEEEECCCCceEE--ee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence                             244789999999875421  11 1122233334444 333222222211   12233333222


Q ss_pred             ccccccCCCCC---C---cccCCCCCcEEEEecCCc---CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEE
Q 022870          142 ETVDTDSLCDS---K---DDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA  212 (291)
Q Consensus       142 ~~~~~~~~~~~---~---~~~~~~~~~~~~~~g~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (291)
                      ......+..+.   .   .+|+|+|+.++.++...+   ..|++||+.+++........      ++.. ......... 
T Consensus       225 ~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~------~~~~-~~~~~~~~~-  296 (388)
T 3pe7_A          225 GTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP------ACSH-LMSNYDGSL-  296 (388)
T ss_dssp             SCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC------CEEE-EEECTTSSE-
T ss_pred             CCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC------Ccee-eeecCCCCe-
Confidence            11112222222   1   689999998765443222   24999999988743322210      1000 000011123 


Q ss_pred             ecCCCCCCceEEEee---------cCCCcEEEEEccCCCCceeecccccc-----------ceeEEEeecCCCeeEEec-
Q 022870          213 YLPSKSQGFVNVLAG---------YEDGSILVWDIRNPGIPLTAMKVHLE-----------PVLCLSIDESCNGGISGG-  271 (291)
Q Consensus       213 ~~p~~~~g~~~l~~g---------~~dg~i~vwd~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~l~s~s-  271 (291)
                      |+|+   |+ .|+..         ..+..|++||+.+ ++ +..+..|..           .+..++|+|+|+.|+..+ 
T Consensus       297 ~spd---g~-~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          297 MVGD---GS-DAPVDVQDDSGYKIENDPFLYVFNMKN-GT-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             EEEE---EC-CC------------CCCCEEEEEETTT-TE-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             EccC---CC-cceeEeeeccccccCCCCEEEEEeccC-Cc-eEEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence            8888   44 44432         5567999999986 43 455655555           578899999999887655 


Q ss_pred             CCCeEEEEEcC
Q 022870          272 ADQKIVLYNLD  282 (291)
Q Consensus       272 ~dg~i~vw~~~  282 (291)
                      .+|...+|.++
T Consensus       371 ~~g~~~l~~~~  381 (388)
T 3pe7_A          371 VHGKPALYLAT  381 (388)
T ss_dssp             TTSSCEEEEEE
T ss_pred             CCCceeEEEEE
Confidence            46777777554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=5.6e-14  Score=111.07  Aligned_cols=214  Identities=9%  Similarity=0.026  Sum_probs=138.7

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC----
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD----   85 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----   85 (291)
                      ....+.++...+.+++|+++|++++++..++.|.+||.++++.......+.  ..+.+++++|  +++++++...+    
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~i~~~~--dg~l~v~~~~~~~~~  111 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHK--DGRLFVCYLGDFKST  111 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS--SSEEEEEECT--TSCEEEEECTTSSSC
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC--CCcceEEECC--CCcEEEEeCCCCCCC
Confidence            345566677778999999999988888899999999998877655443333  4499999999  88877777666    


Q ss_pred             CeEEEEECCCCCCCCCCccc-cccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           86 GTVKCWDIENGGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      +.|.+||.+++....  ... .........                                       ++++|+|.. +
T Consensus       112 ~~i~~~d~~~~~~~~--~~~~~~~~~~~~~---------------------------------------i~~d~~g~l-~  149 (333)
T 2dg1_A          112 GGIFAATENGDNLQD--IIEDLSTAYCIDD---------------------------------------MVFDSKGGF-Y  149 (333)
T ss_dssp             CEEEEECTTSCSCEE--EECSSSSCCCEEE---------------------------------------EEECTTSCE-E
T ss_pred             ceEEEEeCCCCEEEE--EEccCccCCcccc---------------------------------------eEECCCCCE-E
Confidence            689999988765321  000 000000000                                       558888854 4


Q ss_pred             EEecC-----CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          165 AVAGE-----QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       165 ~~~g~-----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      +++..     ..+.|..+|..+++......        .     ......+. |+|+   |+.++++...++.|++||+.
T Consensus       150 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~-----~~~~~~i~-~~~d---g~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          150 FTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--------N-----ISVANGIA-LSTD---EKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             EEECCCBTTBCCEEEEEECTTSCCEEEEEE--------E-----ESSEEEEE-ECTT---SSEEEEEEGGGTEEEEEEEC
T ss_pred             EEeccccccCCCceEEEEeCCCCEEEEeec--------C-----CCcccceE-ECCC---CCEEEEEeCCCCeEEEEEec
Confidence            33321     13567777776554332222        0     11245565 9998   44244555668899999996


Q ss_pred             CCCCceee--------ccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          240 NPGIPLTA--------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       240 ~~~~~~~~--------~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      +.+..+..        +.++ ..+..++++++|+++++...++.|.+||.+ ++.+.
T Consensus       213 ~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~  267 (333)
T 2dg1_A          213 DDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIG  267 (333)
T ss_dssp             TTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEE
T ss_pred             CCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEE
Confidence            42333321        1222 467889999999988888778999999985 44443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.70  E-value=7.6e-15  Score=127.70  Aligned_cols=213  Identities=8%  Similarity=0.014  Sum_probs=137.0

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCC-----eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe---
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGG-----ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT---   87 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~---   87 (291)
                      +|...+..++|||||++||.+..++     +|++||+.+++.+.....+   ..+..++|+|  ||+.|+.++.++.   
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~---~~~~~~~wsp--Dg~~l~~~~~~~~~~~  196 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTH--DGKGMFYNAYPQQDGK  196 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECT--TSSEEEEEECCCCSSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC---cccceEEEEe--CCCEEEEEEECCcccc
Confidence            3555788999999999998765433     8999999999877643322   1267899999  9999998887766   


Q ss_pred             -------------EEEEECCCCCCCCCCccccccceE-EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC
Q 022870           88 -------------VKCWDIENGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK  153 (291)
Q Consensus        88 -------------i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (291)
                                   |++|++.+++.....+........ ...                                       
T Consensus       197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~---------------------------------------  237 (710)
T 2xdw_A          197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG---------------------------------------  237 (710)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE---------------------------------------
T ss_pred             ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE---------------------------------------
Confidence                         999998776421101111110000 000                                       


Q ss_pred             cccCCCCCcEEEEecCC---cCeEEEEeCCC------cc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceE
Q 022870          154 DDVPAEGPKYMAVAGEQ---LSEVEIWDLNT------AE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~---d~~i~~wd~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  223 (291)
                      ++|+|+|+.+++.+...   +..|++||+.+      +. ....+.        .+....    ..  .|+|+   |..+
T Consensus       238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~--------~~~~~~----~~--~~s~d---g~~l  300 (710)
T 2xdw_A          238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI--------DNFEGE----YD--YVTNE---GTVF  300 (710)
T ss_dssp             EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE--------CSSSSC----EE--EEEEE---TTEE
T ss_pred             EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee--------CCCCcE----EE--EEecc---CCEE
Confidence            45999999887655322   56899999986      43 344454        232211    11  27776   4424


Q ss_pred             EEeecC---CCcEEEEEccCCCC-ceeecccccc--ceeEEEeecCCCeeEEecCCCe--EEEEEcCCCceeee
Q 022870          224 VLAGYE---DGSILVWDIRNPGI-PLTAMKVHLE--PVLCLSIDESCNGGISGGADQK--IVLYNLDHSTVSHC  289 (291)
Q Consensus       224 l~~g~~---dg~i~vwd~~~~~~-~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~--i~vw~~~~~~~~~~  289 (291)
                      ++.+..   ++.|.+||+.++.. ....+..|..  .+.+++|++++.++++...|+.  |.+|++.+++.++.
T Consensus       301 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~  374 (710)
T 2xdw_A          301 TFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKI  374 (710)
T ss_dssp             EEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred             EEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEe
Confidence            444433   34799999987321 2345555544  6888999988888888888885  56677766765544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=3.5e-14  Score=110.36  Aligned_cols=243  Identities=8%  Similarity=-0.048  Sum_probs=152.2

Q ss_pred             CceEEecCCccceeEEEEcCCCC-EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      ..+..+..+.....+++|+|+++ +++++..++.|..||..++  ...+..+..  .+.++++++  +|+++++...++.
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~--~~~~l~~~~--dg~l~v~~~~~~~   91 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSH--HQNGHCLNK--QGHLIACSHGLRR   91 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCS--SEEEEEECT--TCCEEEEETTTTE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCC--CcceeeECC--CCcEEEEecCCCe
Confidence            44566666777789999999998 7888889999999998876  555555553  489999999  8888777777789


Q ss_pred             EEEEECCCCCCCCCCccccccce----EEEEEeecccCccceecc----------------CCCCceeeecccCcccccc
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNS----YHFCKLSLVKEPYANAKQ----------------ANEPKDCYEREVGETVDTD  147 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~  147 (291)
                      |.+||..+++...  ........    .....+...  .......                ......++.+.........
T Consensus        92 i~~~d~~~g~~~~--~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  167 (296)
T 3e5z_A           92 LERQREPGGEWES--IADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAP  167 (296)
T ss_dssp             EEEECSTTCCEEE--EECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEE
T ss_pred             EEEEcCCCCcEEE--EeeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEe
Confidence            9999997765321  11100000    001111111  1111110                0012244444432211111


Q ss_pred             CCCCCC---cccCCCCCcEEEEecCCcCeEEEEeCC-Ccce---eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCC
Q 022870          148 SLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLN-TAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (291)
Q Consensus       148 ~~~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  220 (291)
                      ......   ++|+|+++.+ + +.+.++.|.+||+. +++.   ...+.        .+    ...+..+. +.++   |
T Consensus       168 ~~~~~~~~gi~~s~dg~~l-v-~~~~~~~i~~~~~~~~g~~~~~~~~~~--------~~----~~~p~~i~-~d~~---G  229 (296)
T 3e5z_A          168 IRDRVKPNGLAFLPSGNLL-V-SDTGDNATHRYCLNARGETEYQGVHFT--------VE----PGKTDGLR-VDAG---G  229 (296)
T ss_dssp             ECCCSSEEEEEECTTSCEE-E-EETTTTEEEEEEECSSSCEEEEEEEEC--------CS----SSCCCSEE-EBTT---S
T ss_pred             ecCCCCCccEEECCCCCEE-E-EeCCCCeEEEEEECCCCcCcCCCeEee--------CC----CCCCCeEE-ECCC---C
Confidence            111111   8999999876 4 56667899999987 4443   22221        11    22334455 8887   5


Q ss_pred             ceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEe-ecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       221 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      + ++++.  ++.|.+||..  ++.+..+..+.. +++++| +++++.|+.++.++ +.-++.++.++
T Consensus       230 ~-l~v~~--~~~v~~~~~~--g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~  289 (296)
T 3e5z_A          230 L-IWASA--GDGVHVLTPD--GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL  289 (296)
T ss_dssp             C-EEEEE--TTEEEEECTT--SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred             C-EEEEc--CCeEEEECCC--CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence            4 44444  7899999986  677777877777 999999 58888888887664 55666666654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.69  E-value=1.7e-15  Score=120.41  Aligned_cols=212  Identities=9%  Similarity=0.017  Sum_probs=130.6

Q ss_pred             CceEEecCCc-cceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecC----CcceEEEEEeecCCCCeEEEE
Q 022870            9 DPVAVLRGHR-ASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus         9 ~~~~~l~~h~-~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      +.+.++..+. ..+..++|+|+++++ +++..++.|.+||+.+++.+..+.....    ...+..++|+|  +|++|+++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~  109 (349)
T 1jmx_B           32 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYAT  109 (349)
T ss_dssp             EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEE
T ss_pred             cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC--CCCEEEEE
Confidence            4455555433 257899999999865 5666789999999999988877764321    12378899999  99999988


Q ss_pred             eCC------------CeEEEEECCCCCCCCCCccccccc-eEEEEEeecccCccceeccCCCCceeeecccCccccccCC
Q 022870           83 GRD------------GTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL  149 (291)
Q Consensus        83 ~~d------------g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (291)
                      +.+            +.|.+||+.+++.... ....... ......+++...    ....+.....++............
T Consensus       110 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~----l~~~~~~i~~~d~~~~~~~~~~~~  184 (349)
T 1jmx_B          110 VNPTQRLNDHYVVKPPRLEVFSTADGLEAKP-VRTFPMPRQVYLMRAADDGS----LYVAGPDIYKMDVKTGKYTVALPL  184 (349)
T ss_dssp             EEEEEECSSCEEECCCEEEEEEGGGGGGBCC-SEEEECCSSCCCEEECTTSC----EEEESSSEEEECTTTCCEEEEECS
T ss_pred             cccccccccccccCCCeEEEEECCCccccce-eeeccCCCcccceeECCCCc----EEEccCcEEEEeCCCCceeccccc
Confidence            865            8999999987543221 1111110 111111222221    111122233444333221111000


Q ss_pred             C---------------------------------------------------------------------CCC--cccCC
Q 022870          150 C---------------------------------------------------------------------DSK--DDVPA  158 (291)
Q Consensus       150 ~---------------------------------------------------------------------~~~--~~~~~  158 (291)
                      .                                                                     ...  ++|+|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  264 (349)
T 1jmx_B          185 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP  264 (349)
T ss_dssp             TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECS
T ss_pred             cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecC
Confidence            0                                                                     000  46678


Q ss_pred             -CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870          159 -EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (291)
Q Consensus       159 -~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (291)
                       +++.+++ +   ++.|.+||+.+++.+..+..       ++      .+..+. |+|+   |+ +|++++.++.|++||
T Consensus       265 ~dg~~l~~-~---~~~v~~~d~~~~~~~~~~~~-------~~------~~~~~~-~s~d---g~-~l~~~~~~~~v~v~d  322 (349)
T 1jmx_B          265 KDPNQIYG-V---LNRLAKYDLKQRKLIKAANL-------DH------TYYCVA-FDKK---GD-KLYLGGTFNDLAVFN  322 (349)
T ss_dssp             SCTTEEEE-E---ESEEEEEETTTTEEEEEEEC-------SS------CCCEEE-ECSS---SS-CEEEESBSSEEEEEE
T ss_pred             CCCCEEEE-E---cCeEEEEECccCeEEEEEcC-------CC------CccceE-ECCC---CC-EEEEecCCCeEEEEe
Confidence             8876654 3   68999999999988777762       11      234565 9998   44 666778889999999


Q ss_pred             ccCCCCceeeccc
Q 022870          238 IRNPGIPLTAMKV  250 (291)
Q Consensus       238 ~~~~~~~~~~~~~  250 (291)
                      +++ ++.+..+..
T Consensus       323 ~~~-~~~~~~~~~  334 (349)
T 1jmx_B          323 PDT-LEKVKNIKL  334 (349)
T ss_dssp             TTT-TEEEEEEEC
T ss_pred             ccc-cceeeeeec
Confidence            988 676666654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=1.8e-13  Score=108.00  Aligned_cols=238  Identities=6%  Similarity=-0.105  Sum_probs=147.6

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCCeEEEEECCCCCC
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIENGGL   98 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~   98 (291)
                      ....+.+.. +.+.++...++.|.+||..+++.+.++...   .....+++++  ++ .++.+. .++.|.+||..+++.
T Consensus        45 ~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~~---~~p~~i~~~~--~g-~lyv~~~~~~~v~~iD~~t~~~  117 (328)
T 3dsm_A           45 VAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITGF---TSPRYIHFLS--DE-KAYVTQIWDYRIFIINPKTYEI  117 (328)
T ss_dssp             CEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEECC---SSEEEEEEEE--TT-EEEEEEBSCSEEEEEETTTTEE
T ss_pred             cceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCCC---CCCcEEEEeC--CC-eEEEEECCCCeEEEEECCCCeE
Confidence            356677743 445566666899999999999998888543   3378999999  86 455444 889999999998765


Q ss_pred             CCCCcccccc------ceEEEEEeecccCccceecc-CCCCceeeecccCccccccCCCCC--CcccCCCCCcEEEEecC
Q 022870           99 SSNPSLTIKT------NSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDS--KDDVPAEGPKYMAVAGE  169 (291)
Q Consensus        99 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~  169 (291)
                      ..  ......      .+.. ..+  .......... ....+..++............+..  .++++|+|+ +++++..
T Consensus       118 ~~--~i~~g~~~~~~~~p~~-i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~  191 (328)
T 3dsm_A          118 TG--YIECPDMDMESGSTEQ-MVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-MWTITDG  191 (328)
T ss_dssp             EE--EEECTTCCTTTCBCCC-EEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-EEEEBCC
T ss_pred             EE--EEEcCCccccCCCcce-EEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-EEEEECC
Confidence            32  111111      1111 111  1111111111 134455566655543332222222  288999986 4443322


Q ss_pred             C---------cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          170 Q---------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       170 ~---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      .         .+.|.++|..+++....+...           .......++ |+|+   ++ .|+++..  .|.+||..+
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-----------~g~~p~~la-~~~d---~~-~lyv~~~--~v~~~d~~t  253 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-----------LGDWPSEVQ-LNGT---RD-TLYWINN--DIWRMPVEA  253 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTTEEEEEEECC-----------TTCCCEEEE-ECTT---SC-EEEEESS--SEEEEETTC
T ss_pred             CccCCccccCCceEEEEECCCCeEEEEEecC-----------CCCCceeEE-EecC---CC-EEEEEcc--EEEEEECCC
Confidence            1         278999999998877666521           012345665 9997   33 5655544  899999987


Q ss_pred             CCCcee-e-ccccccceeEEEeec-CCCeeEEe----cCCCeEEEEEcCCCceeeee
Q 022870          241 PGIPLT-A-MKVHLEPVLCLSIDE-SCNGGISG----GADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       241 ~~~~~~-~-~~~h~~~v~~~~~~~-~~~~l~s~----s~dg~i~vw~~~~~~~~~~~  290 (291)
                       ++... . +..+.....+++++| ++.++++.    ..++.|.+||.+ ++++.++
T Consensus       254 -~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          254 -DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             -SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             -CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence             54432 1 222246789999998 66666666    678999999998 8877664

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.66  E-value=1.9e-14  Score=124.26  Aligned_cols=251  Identities=9%  Similarity=-0.000  Sum_probs=151.6

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEe--cCCCeEEEEeCCCCeEEEEEeeecCCcceE---------EEEEe--ecCCCC
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAG--TTGGELRIWDTVQHRTVSSSWVHSAAHGIV---------SVATG--PSIGLN   77 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~~   77 (291)
                      ...+.+|...+..++|++++.++++.  +.++...||....+.....+..+...  +.         ...|+  |  ||+
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~SP--Dg~   91 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWN--VRNRVFEYSGFPWAGVPRP--AGG   91 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCC--BCCCGGGTCCCCEEEECCS--SSS
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCcc--ccccccccCCccceeeeec--CCC
Confidence            34577899999999999987777777  66889999996544445556555432  55         56666  8  888


Q ss_pred             e-EEEEeC-CCeEEEEECC--C-CCCCCCCcccc----ccceEEEEEeecccCccceeccC-------C--CCceeeecc
Q 022870           78 K-VISQGR-DGTVKCWDIE--N-GGLSSNPSLTI----KTNSYHFCKLSLVKEPYANAKQA-------N--EPKDCYERE  139 (291)
Q Consensus        78 ~-l~s~~~-dg~i~iwd~~--~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~  139 (291)
                      . |+.++. +..|.+|++.  + ++...  +...    .........+++...........       .  ..+..+++.
T Consensus        92 ~~la~~~~~~~~l~~~~~~~~g~~~~~~--l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~  169 (662)
T 3azo_A           92 PLLVFTHFGDQRLYAFEPDAPGGAVPRP--LTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD  169 (662)
T ss_dssp             CEEEEEBTTTCCEEEECTTSTTCCCCEE--CSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred             eEEEEEECCCCeEEEEcCCCCCCCCCEe--ccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence            8 665543 5667777765  2 33211  1111    12233445555555444333322       1  233344554


Q ss_pred             cCc----cccccCC-CCCC----cccCCCCCcEEEEecCC------cCeEEEEeCC-Ccc--eeeEecccccCCCCCCCC
Q 022870          140 VGE----TVDTDSL-CDSK----DDVPAEGPKYMAVAGEQ------LSEVEIWDLN-TAE--RCTRLHQNSCGGSPNFSS  201 (291)
Q Consensus       140 ~~~----~~~~~~~-~~~~----~~~~~~~~~~~~~~g~~------d~~i~~wd~~-~~~--~~~~~~~~~~~~~~~~~~  201 (291)
                      ...    .....+. .+..    ++|+|||+.++.++...      ...|++||+. +++  ....+..       ++  
T Consensus       170 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~-------~~--  240 (662)
T 3azo_A          170 GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG-------GP--  240 (662)
T ss_dssp             STTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE-------ET--
T ss_pred             CCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC-------CC--
Confidence            410    1112222 2222    88999998876544332      1479999998 561  2333331       22  


Q ss_pred             CcceeeeeEEEecCCCCCCceEEEeecCCC--cEEEEEccCCCCceeeccccccc--------eeEEEeecCCCeeEEec
Q 022870          202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEP--------VLCLSIDESCNGGISGG  271 (291)
Q Consensus       202 ~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~--------v~~~~~~~~~~~l~s~s  271 (291)
                        ...+..+. |+|+   |+ +++++..++  .|++||+.+ ++.......+...        +..++|++++.++++++
T Consensus       241 --~~~~~~~~-~spd---g~-l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~  312 (662)
T 3azo_A          241 --EEAIAQAE-WAPD---GS-LIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG  312 (662)
T ss_dssp             --TBCEEEEE-ECTT---SC-EEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred             --CceEcceE-ECCC---Ce-EEEEECCCCCeEEEEEECCC-CceeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence              23456666 9998   55 788888888  666677655 5444333333222        56788899999999999


Q ss_pred             CCCeEEEE--EcCCCc
Q 022870          272 ADQKIVLY--NLDHST  285 (291)
Q Consensus       272 ~dg~i~vw--~~~~~~  285 (291)
                      . +.+++|  |+++++
T Consensus       313 ~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          313 K-GAAVLGILDPESGE  327 (662)
T ss_dssp             S-SSCEEEEEETTTTE
T ss_pred             c-CccEEEEEECCCCc
Confidence            8 999999  555554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=7.2e-14  Score=117.38  Aligned_cols=207  Identities=14%  Similarity=-0.002  Sum_probs=142.6

Q ss_pred             CCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC--CCCCCCCCccc
Q 022870           28 QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE--NGGLSSNPSLT  105 (291)
Q Consensus        28 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~  105 (291)
                      +.+.++++...+++|.++|..+++.+..+....   .+..+.|+|  ||+++++++.|+.|.+||+.  +.+..    .+
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v----~~  235 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTV----AE  235 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEE----EE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEe----EE
Confidence            445577788889999999999999998887543   378999999  99999999999999999996  44332    12


Q ss_pred             cccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccC----CCCCcEEEEecCCcCeEEEEeCCC
Q 022870          106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP----AEGPKYMAVAGEQLSEVEIWDLNT  181 (291)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~d~~i~~wd~~~  181 (291)
                      +........                                       ++|+    |+|+++++ +...++.+.++|..+
T Consensus       236 i~~G~~P~~---------------------------------------ia~s~~~~pDGk~l~v-~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          236 IKIGSEARS---------------------------------------IETSKMEGWEDKYAIA-GAYWPPQYVIMDGET  275 (567)
T ss_dssp             EECCSEEEE---------------------------------------EEECCSTTCTTTEEEE-EEEETTEEEEEETTT
T ss_pred             EecCCCCce---------------------------------------eEEccccCCCCCEEEE-EEccCCeEEEEECCC
Confidence            222111111                                       5688    69987766 566689999999999


Q ss_pred             cceeeEecccccCC--CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEE
Q 022870          182 AERCTRLHQNSCGG--SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS  259 (291)
Q Consensus       182 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~  259 (291)
                      .+.+..+.......  ...|.   ...+..+. +++++   ..+++....+|.|.++|..+.......-.........+.
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p---~~rva~i~-~s~~~---~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~  348 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHP---EPRVAAIL-ASHYR---PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG  348 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEES---CCCEEEEE-ECSSS---SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred             CcEEEEEeccccccccccccC---CCceEEEE-EcCCC---CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCce
Confidence            99888776310000  00011   11344454 67763   337777788899999999863222111112344577889


Q ss_pred             eecCCCeeEEec-CCCeEEEEEcCCCceeeee
Q 022870          260 IDESCNGGISGG-ADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       260 ~~~~~~~l~s~s-~dg~i~vw~~~~~~~~~~~  290 (291)
                      |+|++++++++. .++.|.++|+.+++++..+
T Consensus       349 ~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i  380 (567)
T 1qks_A          349 LDGSHRYFITAANARNKLVVIDTKEGKLVAIE  380 (567)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence            999999876554 6789999999999887553

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.65  E-value=5.9e-14  Score=107.74  Aligned_cols=196  Identities=12%  Similarity=0.095  Sum_probs=138.7

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccccc
Q 022870           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (291)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  108 (291)
                      .+++|++++.|+.|.+||.++++.+..+..+.. ..+.++.+.|  +|++++  +.++.|..||. +++.+.    ....
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~p--dG~ilv--s~~~~V~~~d~-~G~~~W----~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATK--AGEILF--SYSKGAKMITR-DGRELW----NIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECT--TSCEEE--ECBSEEEEECT-TSCEEE----EEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECC--CCCEEE--eCCCCEEEECC-CCCEEE----EEcC
Confidence            456899999999999999989999999887642 2388999999  988888  44678999998 666543    2221


Q ss_pred             c--eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceee
Q 022870          109 N--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT  186 (291)
Q Consensus       109 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~  186 (291)
                      .  .....                                       ..+.++|..+++.++ .++.+..+|. +++.+.
T Consensus        74 ~~~~~~~~---------------------------------------~~~~~dG~~lv~~~~-~~~~v~~vd~-~Gk~l~  112 (276)
T 3no2_A           74 PAGCEMQT---------------------------------------ARILPDGNALVAWCG-HPSTILEVNM-KGEVLS  112 (276)
T ss_dssp             CTTCEEEE---------------------------------------EEECTTSCEEEEEES-TTEEEEEECT-TSCEEE
T ss_pred             CCCccccc---------------------------------------cEECCCCCEEEEecC-CCCEEEEEeC-CCCEEE
Confidence            1  00000                                       337788876664333 2577888886 677776


Q ss_pred             EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCe
Q 022870          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG  266 (291)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  266 (291)
                      ++....     .. .........+. +.++   |. ++++...++.|..||..  ++.+.++..+ ..+.++...+++++
T Consensus       113 ~~~~~~-----~~-~~~~~~~~~v~-~~~~---G~-~lv~~~~~~~v~~~d~~--G~~~w~~~~~-~~~~~~~~~~~g~~  178 (276)
T 3no2_A          113 KTEFET-----GI-ERPHAQFRQIN-KNKK---GN-YLVPLFATSEVREIAPN--GQLLNSVKLS-GTPFSSAFLDNGDC  178 (276)
T ss_dssp             EEEECC-----SC-SSGGGSCSCCE-ECTT---SC-EEEEETTTTEEEEECTT--SCEEEEEECS-SCCCEEEECTTSCE
T ss_pred             EEeccC-----CC-CcccccccCce-ECCC---CC-EEEEecCCCEEEEECCC--CCEEEEEECC-CCccceeEcCCCCE
Confidence            665310     00 00011122233 6666   55 89999999999999986  7888888764 45677888999999


Q ss_pred             eEEecCCCeEEEEEcCCCceeee
Q 022870          267 GISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       267 l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      +++++.++.|..+|.++++++-+
T Consensus       179 ~v~~~~~~~v~~~d~~tG~~~w~  201 (276)
T 3no2_A          179 LVACGDAHCFVQLNLESNRIVRR  201 (276)
T ss_dssp             EEECBTTSEEEEECTTTCCEEEE
T ss_pred             EEEeCCCCeEEEEeCcCCcEEEE
Confidence            99999889999999998888654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.64  E-value=2.2e-13  Score=104.34  Aligned_cols=239  Identities=8%  Similarity=-0.033  Sum_probs=141.0

Q ss_pred             ceeEEEEcCCCCEEE-EecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870           20 SVTDVCFHQTKPILF-AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~   98 (291)
                      ...+++++++|++++ +...++.|.+||..+.........+.  ..+.++++.+  +++++++.. ++.|.+||......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~p~~i~~~~--~g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL--YQPQGLAVDG--AGTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC--CSCCCEEECT--TCCEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc--CCcceeEECC--CCCEEEEcC-CCEEEEEeCCCceE
Confidence            678999999998777 55778999999976544322111121  3478999999  877655555 88999999876543


Q ss_pred             CCCCcccccc-ceEEEEEeecccCccceec-cCCCCceeeecccCccccccCCC--C-CCcccCCCCCcEEEEecCCcCe
Q 022870           99 SSNPSLTIKT-NSYHFCKLSLVKEPYANAK-QANEPKDCYEREVGETVDTDSLC--D-SKDDVPAEGPKYMAVAGEQLSE  173 (291)
Q Consensus        99 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g~~d~~  173 (291)
                      ..   ..... .......+....  ..... ........++.............  . ..++++++|. +++ +...++.
T Consensus       100 ~~---~~~~~~~~p~~i~~~~~g--~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v-~~~~~~~  172 (270)
T 1rwi_B          100 TV---LPFDGLNYPEGLAVDTQG--AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYV-TDTDNNR  172 (270)
T ss_dssp             EE---CCCCSCSSEEEEEECTTC--CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEE-EEGGGTE
T ss_pred             ee---eecCCcCCCcceEECCCC--CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEE-EECCCCE
Confidence            21   11111 112222222211  11111 11122223322221111111111  1 1288999886 554 3334689


Q ss_pred             EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc
Q 022870          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE  253 (291)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~  253 (291)
                      |.+||...........        ..    ...+..+. +.++   |. ++++...++.|.+||... .........+..
T Consensus       173 i~~~~~~~~~~~~~~~--------~~----~~~p~~i~-~d~~---g~-l~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~  234 (270)
T 1rwi_B          173 VVKLEAESNNQVVLPF--------TD----ITAPWGIA-VDEA---GT-VYVTEHNTNQVVKLLAGS-TTSTVLPFTGLN  234 (270)
T ss_dssp             EEEECTTTCCEEECCC--------SS----CCSEEEEE-ECTT---CC-EEEEETTTSCEEEECTTC-SCCEECCCCSCS
T ss_pred             EEEEecCCCceEeecc--------cC----CCCceEEE-ECCC---CC-EEEEECCCCcEEEEcCCC-CcceeeccCCCC
Confidence            9999988765433221        11    13455665 8887   54 677777788999999875 333322223345


Q ss_pred             ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      .+.+++++++|+++++...++.|+++++...+..+
T Consensus       235 ~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~~  269 (270)
T 1rwi_B          235 TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHHH  269 (270)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSCC
T ss_pred             CceeEEECCCCCEEEEECCCCEEEEEcCCCccccC
Confidence            78999999999988999999999999998877654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.63  E-value=1.6e-14  Score=124.70  Aligned_cols=216  Identities=9%  Similarity=0.003  Sum_probs=136.9

Q ss_pred             ceEEecC-----CccceeEEEEcCCCCEEEEecCC----------CeEEEEeCCC------CeEEEEEe-eecCCcceEE
Q 022870           10 PVAVLRG-----HRASVTDVCFHQTKPILFAGTTG----------GELRIWDTVQ------HRTVSSSW-VHSAAHGIVS   67 (291)
Q Consensus        10 ~~~~l~~-----h~~~v~~l~~~~~~~~l~s~~~d----------g~v~iwd~~~------~~~~~~~~-~~~~~~~v~~   67 (291)
                      ....+..     |...+..++|+|||+.|++++.|          ..|++||+.+      ++. ..+. .+.  ..+..
T Consensus       116 ~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~--~~~~~  192 (662)
T 3azo_A          116 VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAH--RFVTG  192 (662)
T ss_dssp             CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCS--SEECC
T ss_pred             CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCC--CcccC
Confidence            3445555     67889999999999999988877          5899999987      544 3343 333  44888


Q ss_pred             EEEeecCCCCeEEEEeCC--------CeEEEEECC-CCCCCC-CCccccccceEEEEEeecccCccceeccCCCCceeee
Q 022870           68 VATGPSIGLNKVISQGRD--------GTVKCWDIE-NGGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYE  137 (291)
Q Consensus        68 ~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (291)
                      ++|+|  ||++|+.++.+        ..|.+||+. +++... ..+......... .                       
T Consensus       193 ~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~-~-----------------------  246 (662)
T 3azo_A          193 PRLSP--DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA-Q-----------------------  246 (662)
T ss_dssp             CEECT--TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE-E-----------------------
T ss_pred             ceECC--CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc-c-----------------------
Confidence            99999  99999987755        379999998 442100 000000000000 0                       


Q ss_pred             cccCccccccCCCCCCcccCCCCCcEEEEecCCcC--eEEEEeCCCcceeeEecccccCCCCCCCCCccee-----eeeE
Q 022870          138 REVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM-----CMAV  210 (291)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  210 (291)
                                      ++|+|+|+ +++ +++.++  .|.+||+.+++......        .+.. ....     +..+
T Consensus       247 ----------------~~~spdg~-l~~-~~~~~~~~~l~~~~~~~~~~~~l~~--------~~~~-~~~p~w~~~~~~~  299 (662)
T 3azo_A          247 ----------------AEWAPDGS-LIV-ATDRTGWWNLHRVDPATGAATQLCR--------REEE-FAGPLWTPGMRWF  299 (662)
T ss_dssp             ----------------EEECTTSC-EEE-EECTTSSCEEEEECTTTCCEEESSC--------CSSB-SSCCCCSTTCCSE
T ss_pred             ----------------eEECCCCe-EEE-EECCCCCeEEEEEECCCCceeeccc--------cccc-ccCccccccCceE
Confidence                            55999998 555 455567  67777776665433222        1111 1000     2334


Q ss_pred             EEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEE-EeecCCCeeEEecCCC--eEEEEEcCCCcee
Q 022870          211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL-SIDESCNGGISGGADQ--KIVLYNLDHSTVS  287 (291)
Q Consensus       211 ~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~l~s~s~dg--~i~vw~~~~~~~~  287 (291)
                      . |+|+   ++ +++++.. +.+++|.+...+..+..+..|...+..+ +++++..++++++.+.  .|.+||+.+++..
T Consensus       300 ~-~~~~---~~-~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~  373 (662)
T 3azo_A          300 A-PLAN---GL-IAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR  373 (662)
T ss_dssp             E-ECTT---SC-EEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             e-EeCC---CE-EEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence            4 7776   44 8888888 9999995443234467788888888887 6776655566666665  4555566676643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.63  E-value=1.4e-14  Score=125.62  Aligned_cols=249  Identities=10%  Similarity=-0.018  Sum_probs=150.9

Q ss_pred             CCccceeEEEEcCCCCEEE-----EecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe---
Q 022870           16 GHRASVTDVCFHQTKPILF-----AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT---   87 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~-----s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~---   87 (291)
                      +|...+..++|||||++||     .|+.+.+|++||+.+++.+.  ..+........++|+|  ||+.|+.++.|..   
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wsp--Dg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTP--DSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECT--TSSEEEEEECCCCTTS
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEec--CCCEEEEEEecCCCCC
Confidence            4666799999999999998     55566899999999887641  1121111126899999  9999999888776   


Q ss_pred             ----------EEEEECCCCCCCCCCcccccc--ceEEEEEeecccCccceeccCC-CCceeeecccCccccccCCCCCC-
Q 022870           88 ----------VKCWDIENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSK-  153 (291)
Q Consensus        88 ----------i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-  153 (291)
                                |++|++.++......+.....  .......+++............ ....++.++........+..+.. 
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  273 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGA  273 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSC
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCc
Confidence                      999999887532211222221  1233444555554443333332 22233333221111111111111 


Q ss_pred             ---cccCCCCCcEEEEecC--CcCeEEEEeCCCcce--eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe
Q 022870          154 ---DDVPAEGPKYMAVAGE--QLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (291)
Q Consensus       154 ---~~~~~~~~~~~~~~g~--~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (291)
                         ..+ ++|. +++.+..  .++.|.+||+.+++.  ...+.        .+.  ....+..+. |+ +   +. ++++
T Consensus       274 ~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~--~~~~l~~~~-~~-~---~~-lv~~  335 (695)
T 2bkl_A          274 KYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIV--------PED--SSASLLSVS-IV-G---GH-LSLE  335 (695)
T ss_dssp             CEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEE--------CCC--SSCEEEEEE-EE-T---TE-EEEE
T ss_pred             eEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEe--------cCC--CCCeEEEEE-EE-C---CE-EEEE
Confidence               333 6776 6654431  358899999987653  23333        111  122344454 65 2   43 7888


Q ss_pred             ecCCCcEEEEEccCCCCceeecccc-ccceeEEEeecCCCeeE----EecCCCeEEEEEcCCCce
Q 022870          227 GYEDGSILVWDIRNPGIPLTAMKVH-LEPVLCLSIDESCNGGI----SGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       227 g~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~----s~s~dg~i~vw~~~~~~~  286 (291)
                      ...|+..++|.+...+.....+..+ .+.+..+++++++..++    +....++|++||+.+++.
T Consensus       336 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            8999988888766325556666655 66788889999987776    334458899999988764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.62  E-value=3e-12  Score=102.44  Aligned_cols=259  Identities=8%  Similarity=0.012  Sum_probs=151.2

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEec----------CCCeEEEEeCCCCeEEEEEeee-cC----CcceEEEEEeec
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVH-SA----AHGIVSVATGPS   73 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~-~~----~~~v~~~~~~~~   73 (291)
                      +.+.++..-..+  .++++|||++++.+.          .++.|.+||..+.+.+..+... ..    ...-..++|+| 
T Consensus        58 ~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-  134 (373)
T 2mad_H           58 SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-  134 (373)
T ss_pred             eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-
Confidence            344455433333  899999999998875          3678999999988888776543 00    01145899999 


Q ss_pred             CCCCeEEEEeC--CCeEEEEECCCCCCCCCCccc-cccceEEEEEeecccCccceeccCCCCceeeecccCcccccc---
Q 022870           74 IGLNKVISQGR--DGTVKCWDIENGGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD---  147 (291)
Q Consensus        74 ~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  147 (291)
                       ||++|+++..  ++.|.++| .+++...    . +.....  ..+.+............+....++. ..+.....   
T Consensus       135 -DG~~l~v~n~~~~~~v~viD-~t~~~~~----~~i~~~~~--~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~  205 (373)
T 2mad_H          135 -NNADLLFFQFAAGPAVGLVV-QGGSSDD----QLLSSPTC--YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG  205 (373)
T ss_pred             -CCCEEEEEecCCCCeEEEEE-CCCCEEe----EEcCCCce--EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc
Confidence             9999998874  57899999 8886543    2 221111  1111111111112222333333444 22222100   


Q ss_pred             --CCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcce--eeEecccccCCCCCCCCCcceeeeeEEEecCCCCC
Q 022870          148 --SLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (291)
Q Consensus       148 --~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  219 (291)
                        ......    ..+.+++..+++++  .++.+.+.|+.....  +..+....  ...............+. ++|++  
T Consensus       206 ~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~v~vid~~~~~~~v~~~~~~~~--~~~~~~~~~p~g~~~~~-~s~d~--  278 (373)
T 2mad_H          206 AMLTAAQNLLTQPAQANKSGRIVWPV--YSGKILQADISAAGATNKAPIDALS--GGRKADTWRPGGWQQVA-YLKSS--  278 (373)
T ss_pred             ccccCCcceeecceeEecCCEEEEEc--CCceEEEEeccCCcceEeeeeeecC--CcccccceecCceEeEE-ECCCC--
Confidence              011111    34566666665544  357899999976532  22221100  00000000011122244 88873  


Q ss_pred             CceEEEeecC----------CCcEEEEEccCCCCceeeccccccceeEEEeecCCC-eeEEec-CCCeEEEEEcCCCcee
Q 022870          220 GFVNVLAGYE----------DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGG-ADQKIVLYNLDHSTVS  287 (291)
Q Consensus       220 g~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s-~dg~i~vw~~~~~~~~  287 (291)
                       . .++++..          ++.|.++|..+ .+.+..+.. .....+++|+|+|+ +++++. .++.|.++|+.+++.+
T Consensus       279 -~-~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          279 -D-GIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             -C-EEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence             3 4444322          46899999998 788788764 34689999999999 777777 5899999999999988


Q ss_pred             eee
Q 022870          288 HCV  290 (291)
Q Consensus       288 ~~~  290 (291)
                      .++
T Consensus       355 ~~i  357 (373)
T 2mad_H          355 QST  357 (373)
T ss_pred             eee
Confidence            763

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.60  E-value=1.6e-13  Score=109.96  Aligned_cols=197  Identities=8%  Similarity=0.043  Sum_probs=120.1

Q ss_pred             EEEEecCC--CeEEEEeC--CCCeEEEEEeee-cCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC-CCCCCCCCccc
Q 022870           32 ILFAGTTG--GELRIWDT--VQHRTVSSSWVH-SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE-NGGLSSNPSLT  105 (291)
Q Consensus        32 ~l~s~~~d--g~v~iwd~--~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~  105 (291)
                      +++.|+..  +.|.+|++  .+++....-... .....+..++|+|  ++++|++++.+ .|.+|++. +++...  ...
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~sp--dg~~l~~~~~~-~v~~~~~~~~g~~~~--~~~   78 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH--ERKNIYGAAMK-KWSSFAVKSPTEIVH--EAS   78 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT--TSSEEEEEEBT-EEEEEEEEETTEEEE--EEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECC--CCCEEEEEccc-eEEEEEECCCCCEEE--eeE
Confidence            35555542  56777664  456543221111 1112478999999  99999999888 99999987 543211  000


Q ss_pred             cccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC-------------CcC
Q 022870          106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-------------QLS  172 (291)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~d~  172 (291)
                              .  .....+..                             ++|+|+|+.+++.+++             .++
T Consensus        79 --------~--~~~g~~~~-----------------------------~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g  119 (365)
T 1jof_A           79 --------H--PIGGHPRA-----------------------------NDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             --------E--ECCSSGGG-----------------------------GCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             --------e--ecCCCCcc-----------------------------EEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence                    0  00000000                             6699999864332332             588


Q ss_pred             eEEEEeCC-CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCCcEEEEEcc-CCCCce--ee
Q 022870          173 EVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIR-NPGIPL--TA  247 (291)
Q Consensus       173 ~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg~i~vwd~~-~~~~~~--~~  247 (291)
                      .+.+|++. .++....+...      .+  .....+..+. |+|+   |+ +|+++. .++.|++||+. + ++..  ..
T Consensus       120 ~v~v~~~~~~g~~~~~~~~~------~~--~~~~~~~~~~-~spd---G~-~l~~~~~~~~~v~~~~~~~~-g~~~~~~~  185 (365)
T 1jof_A          120 YGNVFSVSETGKLEKNVQNY------EY--QENTGIHGMV-FDPT---ET-YLYSADLTANKLWTHRKLAS-GEVELVGS  185 (365)
T ss_dssp             EEEEEEECTTCCEEEEEEEE------EC--CTTCCEEEEE-ECTT---SS-EEEEEETTTTEEEEEEECTT-SCEEEEEE
T ss_pred             eEEEEccCCCCcCcceEeeE------Ee--CCCCcceEEE-ECCC---CC-EEEEEcCCCCEEEEEEECCC-CCEEEeee
Confidence            99999997 45544333210      00  0123456676 9998   55 565544 57899999998 5 4432  23


Q ss_pred             cc--ccccceeEEEeecCCCeeEEecC-CCeEEEEEcC--CCce
Q 022870          248 MK--VHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLD--HSTV  286 (291)
Q Consensus       248 ~~--~h~~~v~~~~~~~~~~~l~s~s~-dg~i~vw~~~--~~~~  286 (291)
                      +.  .|...+..++|+|+|++|++++. ++.|.+|+++  ++++
T Consensus       186 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~  229 (365)
T 1jof_A          186 VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence            33  23567899999999998877664 7899999876  4554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.59  E-value=1.1e-12  Score=100.61  Aligned_cols=199  Identities=12%  Similarity=0.024  Sum_probs=138.0

Q ss_pred             CCCceEEecCCc-cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-
Q 022870            7 PPDPVAVLRGHR-ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-   84 (291)
Q Consensus         7 ~~~~~~~l~~h~-~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-   84 (291)
                      .++.+.++..+. ..+.+++++|+|+++++  .++.|..||. +++.+..+..+.. ..+.++.+.+  +|+.+++.+. 
T Consensus        24 tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~-~~~~~~~~~~--dG~~lv~~~~~   97 (276)
T 3no2_A           24 TKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAG-CEMQTARILP--DGNALVAWCGH   97 (276)
T ss_dssp             TTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTT-CEEEEEEECT--TSCEEEEEEST
T ss_pred             CCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCC-ccccccEECC--CCCEEEEecCC
Confidence            456677777765 57899999999998883  4778999998 8999998886532 3488999999  9999998887 


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      ++.|..+|. +++.+.    ......      ... .                         .......+++.++|..++
T Consensus        98 ~~~v~~vd~-~Gk~l~----~~~~~~------~~~-~-------------------------~~~~~~~v~~~~~G~~lv  140 (276)
T 3no2_A           98 PSTILEVNM-KGEVLS----KTEFET------GIE-R-------------------------PHAQFRQINKNKKGNYLV  140 (276)
T ss_dssp             TEEEEEECT-TSCEEE----EEEECC------SCS-S-------------------------GGGSCSCCEECTTSCEEE
T ss_pred             CCEEEEEeC-CCCEEE----EEeccC------CCC-c-------------------------ccccccCceECCCCCEEE
Confidence            777877775 343322    110000      000 0                         000000145778887554


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                        +...++.|..||.. ++.+.++..        .     ....++. +.++   |. +++++..++.|..+|..+ ++.
T Consensus       141 --~~~~~~~v~~~d~~-G~~~w~~~~--------~-----~~~~~~~-~~~~---g~-~~v~~~~~~~v~~~d~~t-G~~  198 (276)
T 3no2_A          141 --PLFATSEVREIAPN-GQLLNSVKL--------S-----GTPFSSA-FLDN---GD-CLVACGDAHCFVQLNLES-NRI  198 (276)
T ss_dssp             --EETTTTEEEEECTT-SCEEEEEEC--------S-----SCCCEEE-ECTT---SC-EEEECBTTSEEEEECTTT-CCE
T ss_pred             --EecCCCEEEEECCC-CCEEEEEEC--------C-----CCcccee-EcCC---CC-EEEEeCCCCeEEEEeCcC-CcE
Confidence              45568999999998 998888873        1     1223343 6666   44 788888888999999998 888


Q ss_pred             eeeccccc------cceeEEEeecCCCeeEEe
Q 022870          245 LTAMKVHL------EPVLCLSIDESCNGGISG  270 (291)
Q Consensus       245 ~~~~~~h~------~~v~~~~~~~~~~~l~s~  270 (291)
                      +.++..+.      ..+.+++..++|+++++.
T Consensus       199 ~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          199 VRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             EEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            88876432      237888888999988776

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.58  E-value=4.9e-12  Score=106.32  Aligned_cols=257  Identities=13%  Similarity=0.054  Sum_probs=158.9

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCC--CCeEEEEEeeecCCcceEEEEEe----ecCCCCeEEEE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATG----PSIGLNKVISQ   82 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~s~   82 (291)
                      +.+.++... ..+..+.|+|||+++++++.|+.|.+||+.  +++.+..+....   ....++|+    |  +|++++++
T Consensus       188 ~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s~~~~p--DGk~l~v~  261 (567)
T 1qks_A          188 EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETSKMEGW--EDKYAIAG  261 (567)
T ss_dssp             CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEECCSTTC--TTTEEEEE
T ss_pred             eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEccccCC--CCCEEEEE
Confidence            445555532 346789999999999999999999999995  788888777643   25799999    7  88888866


Q ss_pred             eC-CCeEEEEECCCCCCCCCCcccccc----------c-eEE--------------------------------------
Q 022870           83 GR-DGTVKCWDIENGGLSSNPSLTIKT----------N-SYH--------------------------------------  112 (291)
Q Consensus        83 ~~-dg~i~iwd~~~~~~~~~~~~~~~~----------~-~~~--------------------------------------  112 (291)
                      .. +++|.++|..+.+.+..  .....          . ...                                      
T Consensus       262 n~~~~~v~ViD~~t~~~~~~--i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~  339 (567)
T 1qks_A          262 AYWPPQYVIMDGETLEPKKI--QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS  339 (567)
T ss_dssp             EEETTEEEEEETTTCCEEEE--EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE
T ss_pred             EccCCeEEEEECCCCcEEEE--EeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee
Confidence            55 58999999887665331  11000          0 000                                      


Q ss_pred             ------EEEeecccCccceeccCCCCceeeecccCccccccCC----CCCC--cc-cCCCCCcEEEEecCCcCeEEEEeC
Q 022870          113 ------FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL----CDSK--DD-VPAEGPKYMAVAGEQLSEVEIWDL  179 (291)
Q Consensus       113 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~-~~~~~~~~~~~~g~~d~~i~~wd~  179 (291)
                            ...+++.......+......+..++....+.......    .|..  .. ++|++..+++++.-.++.|.++|.
T Consensus       340 ~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~  419 (567)
T 1qks_A          340 AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT  419 (567)
T ss_dssp             CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecC
Confidence                  0011111111111222233445556665543322211    2322  33 478766666644334689999999


Q ss_pred             CC-------cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC-------CCcEEEEEccCC----
Q 022870          180 NT-------AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-------DGSILVWDIRNP----  241 (291)
Q Consensus       180 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-------dg~i~vwd~~~~----  241 (291)
                      .+       .+.++++..        ..    .....+. ++|+   ++ ++.+...       ...|.++|+.+.    
T Consensus       420 ~~~~~~~~~~kvv~~i~~--------~g----~g~~~i~-~~p~---~~-~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g  482 (567)
T 1qks_A          420 DPEGHPDNAWKILDSFPA--------LG----GGSLFIK-THPN---SQ-YLYVDATLNPEAEISGSVAVFDIKAMTGDG  482 (567)
T ss_dssp             CTTTCTTTBTSEEEEEEC--------SC----SCCCCEE-CCTT---CS-EEEEECTTCSSHHHHTCEEEEEGGGCCCSS
T ss_pred             CCCCCccccCEEEEEEec--------CC----CCCEEEE-eCCC---CC-eEEEecCCCCCcccCceEEEEECCcccccc
Confidence            87       556666652        10    1123344 7888   44 5666542       459999999874    


Q ss_pred             -CCceeecc--------ccccceeEEEeecCCCeeEEec-----CCCeEEEEEcCCCceeeee
Q 022870          242 -GIPLTAMK--------VHLEPVLCLSIDESCNGGISGG-----ADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       242 -~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~s-----~dg~i~vw~~~~~~~~~~~  290 (291)
                       ......+.        .-...+..+.|+++|..+..+.     .++.|.|+|..+.++...+
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i  545 (567)
T 1qks_A          483 SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI  545 (567)
T ss_dssp             SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred             cCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence             22222221        1235788999999999886552     3799999999999987764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.57  E-value=2.4e-13  Score=109.89  Aligned_cols=233  Identities=9%  Similarity=-0.111  Sum_probs=133.4

Q ss_pred             eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEE-------------------EEEeecCCCCeEEEE
Q 022870           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS-------------------VATGPSIGLNKVISQ   82 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~l~s~   82 (291)
                      ..+.|+|+|++|+.++.++.|++||+.+++.......+...  ...                   +.|+|  +++.++.+
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~--~~~g~~l~~~~~~~~~~~~~~~~~~sp--dg~~~~~~  159 (396)
T 3c5m_A           84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW--KGYGTWVANSDCTKLVGIEILKRDWQP--LTSWEKFA  159 (396)
T ss_dssp             TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE--EEEEEEEECTTSSEEEEEEEEGGGCCC--CCSHHHHH
T ss_pred             ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc--CCCCCEEEeccCCccccccccccccCC--CCcceeee
Confidence            34889999999999999999999999888766555433321  222                   34567  66666544


Q ss_pred             -----eCCCeEEEEECCCCCCCCCCccccccceEEEEEeec-ccCccceeccCC-----CCceeeecccCccccccCCCC
Q 022870           83 -----GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL-VKEPYANAKQAN-----EPKDCYEREVGETVDTDSLCD  151 (291)
Q Consensus        83 -----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  151 (291)
                           ..+..|.+||+.+++...  +. ..........+++ ............     ..+..++.......  .+..+
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~~~~--~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~  234 (396)
T 3c5m_A          160 EFYHTNPTCRLIKVDIETGELEV--IH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR--KIKEH  234 (396)
T ss_dssp             HHHHTCCCEEEEEEETTTCCEEE--EE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE--ESSCC
T ss_pred             eeccCCCcceEEEEECCCCcEEe--ec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee--Eeecc
Confidence                 456789999998875422  11 1111222233333 222121211111     12333444332211  11112


Q ss_pred             C-C-----cccCCCCCcEEEEecC---CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecC-CCCCCc
Q 022870          152 S-K-----DDVPAEGPKYMAVAGE---QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGF  221 (291)
Q Consensus       152 ~-~-----~~~~~~~~~~~~~~g~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~  221 (291)
                      . .     ++|+|+|+.+++++..   .++.|++||+.+++.......        .     .. . .. |+| +   |+
T Consensus       235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--------~-----~~-~-~~-~s~~d---g~  295 (396)
T 3c5m_A          235 AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM--------P-----PC-S-HL-MSNFD---GS  295 (396)
T ss_dssp             CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--------C-----SE-E-EE-EECSS---SS
T ss_pred             CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC--------C-----CC-C-CC-ccCCC---Cc
Confidence            1 1     6899999887654321   114599999988765433221        0     11 1 44 998 7   55


Q ss_pred             eEEEeec----------------CCCcEEEEEccCCCCceeecccccc-----------ceeEEEeecCCCeeEEecC-C
Q 022870          222 VNVLAGY----------------EDGSILVWDIRNPGIPLTAMKVHLE-----------PVLCLSIDESCNGGISGGA-D  273 (291)
Q Consensus       222 ~~l~~g~----------------~dg~i~vwd~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~l~s~s~-d  273 (291)
                       +++.++                .++.|++||+.+ ++. ..+..+..           .+..++|+|+|+.|+.++. +
T Consensus       296 -~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~  372 (396)
T 3c5m_A          296 -LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE  372 (396)
T ss_dssp             -EEEEEECCC----------CCCCCCEEEEEETTT-TBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred             -eEEEecCCcceeeccccccccCCCCcEEEEeccc-Cce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC
Confidence             565543                347899999986 443 44555544           2567899999998876664 4


Q ss_pred             CeEEE--EEcCCCc
Q 022870          274 QKIVL--YNLDHST  285 (291)
Q Consensus       274 g~i~v--w~~~~~~  285 (291)
                      +...+  .++.+++
T Consensus       373 ~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          373 GVPAIYIADVPESY  386 (396)
T ss_dssp             SSCEEEEEECCTTC
T ss_pred             CCceEEEEEEcccc
Confidence            55444  4555554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.55  E-value=7.6e-13  Score=105.11  Aligned_cols=189  Identities=11%  Similarity=-0.013  Sum_probs=116.9

Q ss_pred             cceeEEEEcCCCCEEEEecCC---C--eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC--------
Q 022870           19 ASVTDVCFHQTKPILFAGTTG---G--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--------   85 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~d---g--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------   85 (291)
                      ..+..++|+|||++|+..+.+   +  .|.+||+.+++.......+   . +..++|+|  +|+.|+.++.+        
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---~-~~~~~wsp--dg~~l~~~~~~~~~~~~~~  132 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK---N-IRSLEWNE--DSRKLLIVGFKRREDEDFI  132 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES---E-EEEEEECT--TSSEEEEEEECCCC-----
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC---C-ccceeECC--CCCEEEEEEccCCCcCCcE
Confidence            457889999999999877653   2  4888898887766544332   3 89999999  99988877643        


Q ss_pred             -------------------CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccc
Q 022870           86 -------------------GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT  146 (291)
Q Consensus        86 -------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (291)
                                         ..|.+||+.+++...    .+.. .      ..                            
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~----~l~~-~------~~----------------------------  173 (347)
T 2gop_A          133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE----EFEK-P------RF----------------------------  173 (347)
T ss_dssp             ----CCCC---------CEEEEEEEETTTTEEEE----EEEE-E------TT----------------------------
T ss_pred             EEcccceeecCcccccCccceEEEEECCCCeEEe----eecC-C------Cc----------------------------
Confidence                               457777776553200    0000 0      00                            


Q ss_pred             cCCCCCCcccCCCCCcEEEEecCCc-----C-eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCC
Q 022870          147 DSLCDSKDDVPAEGPKYMAVAGEQL-----S-EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG  220 (291)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~g~~d-----~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  220 (291)
                           ..++|+|+|  +++++...+     . ...||.+.+++ ...+..        +     ...  . .++|+   |
T Consensus       174 -----~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~--------~-----~~~--~-~~spd---g  226 (347)
T 2gop_A          174 -----SSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFE--------K-----VSF--Y-AVDSD---G  226 (347)
T ss_dssp             -----CEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEE--------E-----ESE--E-EEEEC---S
T ss_pred             -----ccccCCCCe--EEEEEecccccccccccccEEEeCCCc-eEEecc--------C-----cce--e-eECCC---C
Confidence                 005689998  444332211     1 33444333443 333331        1     111  1 24666   5


Q ss_pred             ceEEEeecCC--------CcEEEEEccCCCCceeeccccccceeE-EEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          221 FVNVLAGYED--------GSILVWDIRNPGIPLTAMKVHLEPVLC-LSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       221 ~~~l~~g~~d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      + .|+.++.+        ..|++||  + ++.......|...+.. +.|+ ++ ++++++.++.+++| +++++.
T Consensus       227 ~-~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~  294 (347)
T 2gop_A          227 E-RILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI  294 (347)
T ss_dssp             S-CEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE
T ss_pred             C-EEEEEEccccCCccccceEEEEC--C-CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce
Confidence            5 55554432        4788888  4 5555555666778886 8999 88 88999999999999 875554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.55  E-value=6.4e-12  Score=98.29  Aligned_cols=246  Identities=9%  Similarity=0.036  Sum_probs=142.7

Q ss_pred             ecCCccceeEEEEcCCCCEEEE-------ecCCCeEEEEeCCCCeEEEEEe----eecCCcceEEEEEeecCC-CCeEEE
Q 022870           14 LRGHRASVTDVCFHQTKPILFA-------GTTGGELRIWDTVQHRTVSSSW----VHSAAHGIVSVATGPSIG-LNKVIS   81 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~s-------~~~dg~v~iwd~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~-~~~l~s   81 (291)
                      +...-....+++|++++.++++       +..++.|.+||..+++......    .+.  ..+.++++++  + ++++++
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~--~~~~~i~~~~--~~g~l~v~   88 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG--GIPAGCQCDR--DANQLFVA   88 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEE--CCEEEEEECS--SSSEEEEE
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCC--CCCceEEEec--CCCcEEEE
Confidence            3444456789999999988877       6778999999988777543221    133  3389999999  7 555554


Q ss_pred             EeCCCeEEEEECCCCCCCCCCc-cccc----cceEEEEEeecccCccceeccCCC--------------CceeeecccCc
Q 022870           82 QGRDGTVKCWDIENGGLSSNPS-LTIK----TNSYHFCKLSLVKEPYANAKQANE--------------PKDCYEREVGE  142 (291)
Q Consensus        82 ~~~dg~i~iwd~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~  142 (291)
                      .. .+.|.+||.. ++...  . ....    ........+...  ..........              ...++.++...
T Consensus        89 ~~-~~~l~~~d~~-g~~~~--~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  162 (314)
T 1pjx_A           89 DM-RLGLLVVQTD-GTFEE--IAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG  162 (314)
T ss_dssp             ET-TTEEEEEETT-SCEEE--CCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS
T ss_pred             EC-CCCEEEEeCC-CCEEE--EEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECCCC
Confidence            44 4479999987 54321  1 1100    011111112111  1111111111              12333333221


Q ss_pred             cccccCC---CCCCcccC----CCCCcEEEEecCCcCeEEEEeCC-Cccee--eEecccccCCCCCCCCCcceeeeeEEE
Q 022870          143 TVDTDSL---CDSKDDVP----AEGPKYMAVAGEQLSEVEIWDLN-TAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQA  212 (291)
Q Consensus       143 ~~~~~~~---~~~~~~~~----~~~~~~~~~~g~~d~~i~~wd~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (291)
                      .......   ....++++    |+++.+++ +...++.|.+||.. +++..  ..+..     ..++.   ......+. 
T Consensus       163 ~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v-~~~~~~~i~~~~~~~~g~~~~~~~~~~-----~~~~~---~~~p~~i~-  232 (314)
T 1pjx_A          163 QMIQVDTAFQFPNGIAVRHMNDGRPYQLIV-AETPTKKLWSYDIKGPAKIENKKVWGH-----IPGTH---EGGADGMD-  232 (314)
T ss_dssp             CEEEEEEEESSEEEEEEEECTTSCEEEEEE-EETTTTEEEEEEEEETTEEEEEEEEEE-----CCCCS---SCEEEEEE-
T ss_pred             CEEEeccCCCCcceEEEecccCCCCCEEEE-EECCCCeEEEEECCCCCccccceEEEE-----CCCCC---CCCCCceE-
Confidence            1111110   11117888    98876655 44457899999986 34321  11110     00110   03455665 


Q ss_pred             ecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCC-eeEEecCCCeEEEEEcCCC
Q 022870          213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       213 ~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~  284 (291)
                      +.++   |. ++++...++.|.+||.++ ++.+..+..+...+.+++|+++++ ++++...++.|..|++...
T Consensus       233 ~d~~---G~-l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          233 FDED---NN-LLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EBTT---CC-EEEEEETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             ECCC---CC-EEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            8887   54 666666788999999886 566666666667899999999998 4456666789999998754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.54  E-value=1.6e-12  Score=103.91  Aligned_cols=119  Identities=11%  Similarity=0.144  Sum_probs=79.1

Q ss_pred             CCCEEEEe------cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe----------CCCeEEEEE
Q 022870           29 TKPILFAG------TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWD   92 (291)
Q Consensus        29 ~~~~l~s~------~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd   92 (291)
                      ++.+++..      ..|+.|.+||..+++.+..+..+.  .+  .++|+|  ++++++++.          .+++|.+||
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~--~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d   87 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAF--NG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWD   87 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCE--EE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCC--CC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEE
Confidence            45555543      247899999999999888877653  33  899999  999999876          367899999


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (291)
                      ..+.+...    .+......   ......+                             ..++++|+|++++++....++
T Consensus        88 ~~t~~~~~----~i~~~~~~---~~~g~~p-----------------------------~~i~~spdg~~l~v~n~~~~~  131 (361)
T 2oiz_A           88 ADKLTFEK----EISLPPKR---VQGLNYD-----------------------------GLFRQTTDGKFIVLQNASPAT  131 (361)
T ss_dssp             TTTCCEEE----EEEECTTB---CCBCCCG-----------------------------GGEEECTTSSEEEEEEESSSE
T ss_pred             CcCCcEEE----EEEcCccc---cccCCCc-----------------------------ceEEECCCCCEEEEECCCCCC
Confidence            98765432    11100000   0000000                             007799999988765433368


Q ss_pred             eEEEEeCCCcceeeE-ec
Q 022870          173 EVEIWDLNTAERCTR-LH  189 (291)
Q Consensus       173 ~i~~wd~~~~~~~~~-~~  189 (291)
                      .|.+||+.+++.+.. +.
T Consensus       132 ~v~v~d~~~~~~~~~~i~  149 (361)
T 2oiz_A          132 SIGIVDVAKGDYVEDVTA  149 (361)
T ss_dssp             EEEEEETTTTEEEEEEGG
T ss_pred             eEEEEECCCCcEEEEEec
Confidence            999999999988777 54

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.53  E-value=2.6e-12  Score=103.60  Aligned_cols=257  Identities=8%  Similarity=0.023  Sum_probs=153.9

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEec----------CCCeEEEEeCCCCeEEEEEeee-cC----CcceEEEEEeecC
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVH-SA----AHGIVSVATGPSI   74 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~-~~----~~~v~~~~~~~~~   74 (291)
                      .+.++..-..+  .++++|||++++.+.          .++.|.++|..+.+.+..+... ..    ......++++|  
T Consensus       111 vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp--  186 (426)
T 3c75_H          111 ILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP--  186 (426)
T ss_dssp             EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT--
T ss_pred             EEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC--
Confidence            34444433344  799999999888775          3678999999999998887653 00    01246789999  


Q ss_pred             CCCeEEEEeC--CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcccc---ccCC
Q 022870           75 GLNKVISQGR--DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD---TDSL  149 (291)
Q Consensus        75 ~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  149 (291)
                      ||++++.+..  ++.|.+.|+.+.+...    ++.....  ....+............+....++....+...   ..+.
T Consensus       187 DGk~lyV~n~~~~~~VsVID~~t~kvv~----~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~  260 (426)
T 3c75_H          187 DNKNLLFYQFSPAPAVGVVDLEGKTFDR----MLDVPDC--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH  260 (426)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEE----EEECCSE--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS
T ss_pred             CCCEEEEEecCCCCeEEEEECCCCeEEE----EEEcCCc--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec
Confidence            9999998764  5799999999987644    2222111  01111111111112222222333332221110   0010


Q ss_pred             CC-C----CcccCCCCCcEEEEecCCcCeEEEEeCCCccee--eEecccccCCCCCCCCCc---ceeeeeEEEecCCCCC
Q 022870          150 CD-S----KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKG---RGMCMAVQAYLPSKSQ  219 (291)
Q Consensus       150 ~~-~----~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~  219 (291)
                      .. .    ...+.+++..+++++.  .+.+.+.|+......  ..+...   .  ......   ......+. ++|++  
T Consensus       261 v~~~p~~~~~~~~~dg~~~~~~s~--~g~V~ViD~~~~~~~v~~~~~~~---~--~~~i~~g~~p~g~~~va-~s~dg--  330 (426)
T 3c75_H          261 TEDELLINHPAFSLRSGRLVWPTY--TGKIFQADLTAEGATFRAPIEAL---T--EAERADDWRPGGWQQTA-YHRQS--  330 (426)
T ss_dssp             CTTSCBCSCCEECTTTCEEEEEBT--TSEEEEEEECSSCEEECCCEESS---C--TTTGGGTEEECSSSCEE-EEGGG--
T ss_pred             cCCCceeeEeeecCCCCEEEEEeC--CCcEEEEeccCCceEEeeeeeec---c--ccccccccccCCceeeE-EcCCC--
Confidence            00 0    1567889888776543  589999999765422  111100   0  000000   00011244 88873  


Q ss_pred             CceEEEeec----------CCCcEEEEEccCCCCceeeccccccceeEEEeecCCC-eeEEec-CCCeEEEEEcCCCcee
Q 022870          220 GFVNVLAGY----------EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGG-ADQKIVLYNLDHSTVS  287 (291)
Q Consensus       220 g~~~l~~g~----------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s-~dg~i~vw~~~~~~~~  287 (291)
                       . .+++..          .++.|.++|..+ .+.+..+.. .....+++|+|+++ ++++.. .++.|.++|+.+++.+
T Consensus       331 -~-rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          331 -D-RIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             -T-EEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             -C-EEEEEecccccccccCCCCEEEEEECCC-CeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence             3 333332          135799999999 888888864 33589999999999 777777 5899999999999998


Q ss_pred             eee
Q 022870          288 HCV  290 (291)
Q Consensus       288 ~~~  290 (291)
                      .++
T Consensus       407 ~tI  409 (426)
T 3c75_H          407 RSV  409 (426)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=5.2e-12  Score=100.17  Aligned_cols=262  Identities=8%  Similarity=0.039  Sum_probs=149.1

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEec----------CCCeEEEEeCCCCeEEEEEeeecCC-----cceEEEEEeec
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPS   73 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~   73 (291)
                      +.+.++..-..+ . ++++|||++++.+.          .++.|.+||..+.+.+..+....+.     ..-..++++| 
T Consensus        70 ~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-  146 (386)
T 3sjl_D           70 RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-  146 (386)
T ss_dssp             EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-
T ss_pred             eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-
Confidence            334445433344 4 99999999887765          3678999999999998888653200     1246799999 


Q ss_pred             CCCCeEEEEeC--CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeeccc-Ccccc---cc
Q 022870           74 IGLNKVISQGR--DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETVD---TD  147 (291)
Q Consensus        74 ~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~  147 (291)
                       ||++++++..  ++.|.++|+.+.+...    ++.....  ....+............+....++... .+...   ..
T Consensus       147 -DGk~lyVan~~~~~~VsVID~~t~~vv~----tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~  219 (386)
T 3sjl_D          147 -DGKTLLFYQFSPAPAVGVVDLEGKAFKR----MLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  219 (386)
T ss_dssp             -TSSEEEEEECSSSCEEEEEETTTTEEEE----EEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             -CCCEEEEEEcCCCCeEEEEECCCCcEEE----EEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence             9999888764  6899999999987654    2221111  001111111111222223333333332 11111   01


Q ss_pred             CCCCCC-----cccC-CCCCcEEEEecCCcCeEEEEeCCCcce--eeEecccccCCCCCCCCCcceeeeeEEEecCCCCC
Q 022870          148 SLCDSK-----DDVP-AEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (291)
Q Consensus       148 ~~~~~~-----~~~~-~~~~~~~~~~g~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  219 (291)
                      +.....     .+|. ++|+.++ ++.  +|.|.+.|+.+...  ...+....  ..........+....+. ++|++  
T Consensus       220 ~~~~~~~~~~~~~~~~~dG~~~~-vs~--~g~V~v~d~~~~~~~v~~~~~~~~--~~~~~~g~~p~g~q~~a-~~~~~--  291 (386)
T 3sjl_D          220 FHPEDEFLINHPAYSQKAGRLVW-PTY--TGKIHQIDLSSGDAKFLPAVEALT--EAERADGWRPGGWQQVA-YHRAL--  291 (386)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEE-EBT--TSEEEEEECTTSSCEECCCEESSC--HHHHHTTEEECSSSCEE-EETTT--
T ss_pred             eccccccccccceeEcCCCcEEE-EeC--CCEEEEEECCCCcceeecceeccc--cccccccccCCCcceee-ECCCC--
Confidence            111111     3443 5664444 333  58999999976642  22221000  00000000001111233 77763  


Q ss_pred             CceEEEeec--------CCCcEEEEEccCCCCceeeccccccceeEEEeecCCC-eeEE-ecCCCeEEEEEcCCCceeee
Q 022870          220 GFVNVLAGY--------EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGIS-GGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       220 g~~~l~~g~--------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s-~s~dg~i~vw~~~~~~~~~~  289 (291)
                      ++.|++...        ..+.|.++|+.+ .+.+..+.. ...+++|+++++++ +|++ ...++.|.++|..+++.+.+
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~  369 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  369 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            332222221        125799999999 888888764 34789999999986 5555 45689999999999999887


Q ss_pred             e
Q 022870          290 V  290 (291)
Q Consensus       290 ~  290 (291)
                      +
T Consensus       370 i  370 (386)
T 3sjl_D          370 V  370 (386)
T ss_dssp             E
T ss_pred             e
Confidence            5

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.52  E-value=1.3e-11  Score=97.36  Aligned_cols=200  Identities=13%  Similarity=0.022  Sum_probs=121.7

Q ss_pred             CCccceeEEEEcCCCCEEEEecCC----CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC------C
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTG----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR------D   85 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------d   85 (291)
                      .+...+.+++++++|+++++...+    +.|.+||.+++.....+........+.+++++|  +++++++...      .
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~  161 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS--KGGFYFTDFRGYSTNPL  161 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT--TSCEEEEECCCBTTBCC
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC--CCCEEEEeccccccCCC
Confidence            566789999999999888877666    689999988776543333211224589999999  8877776553      2


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                      +.|..+|..+++..     .+..   ..  ..+..                                 ++|+|+++.+++
T Consensus       162 ~~l~~~~~~~~~~~-----~~~~---~~--~~~~~---------------------------------i~~~~dg~~l~v  198 (333)
T 2dg1_A          162 GGVYYVSPDFRTVT-----PIIQ---NI--SVANG---------------------------------IALSTDEKVLWV  198 (333)
T ss_dssp             EEEEEECTTSCCEE-----EEEE---EE--SSEEE---------------------------------EEECTTSSEEEE
T ss_pred             ceEEEEeCCCCEEE-----Eeec---CC--Ccccc---------------------------------eEECCCCCEEEE
Confidence            45655665443221     0000   00  00000                                 558999876665


Q ss_pred             EecCCcCeEEEEeCCC-cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          166 VAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                       +.+.++.|.+||+++ +.....+......   ...  ....+..+. +.++   |. ++++...++.|.+||..  ++.
T Consensus       199 -~~~~~~~i~~~d~~~~g~~~~~~~~~~~~---~~~--~~~~~~~i~-~d~~---G~-l~v~~~~~~~v~~~d~~--g~~  265 (333)
T 2dg1_A          199 -TETTANRLHRIALEDDGVTIQPFGATIPY---YFT--GHEGPDSCC-IDSD---DN-LYVAMYGQGRVLVFNKR--GYP  265 (333)
T ss_dssp             -EEGGGTEEEEEEECTTSSSEEEEEEEEEE---ECC--SSSEEEEEE-EBTT---CC-EEEEEETTTEEEEECTT--SCE
T ss_pred             -EeCCCCeEEEEEecCCCcCcccccceEEE---ecC--CCCCCCceE-ECCC---CC-EEEEEcCCCEEEEECCC--CCE
Confidence             344468999999964 3332221100000   000  012445565 8887   54 66666678899999984  566


Q ss_pred             eeecccccc------ceeEEEeecCCCeeEEecCC
Q 022870          245 LTAMKVHLE------PVLCLSIDESCNGGISGGAD  273 (291)
Q Consensus       245 ~~~~~~h~~------~v~~~~~~~~~~~l~s~s~d  273 (291)
                      +..+..+..      .+.+++|++++..|+.++.+
T Consensus       266 ~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          266 IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            666554432      68999999998666655544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.52  E-value=2e-12  Score=113.07  Aligned_cols=207  Identities=9%  Similarity=-0.020  Sum_probs=125.5

Q ss_pred             CccceeEEEEcCCCCEEEEecCC-----CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe----
Q 022870           17 HRASVTDVCFHQTKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT----   87 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~----   87 (291)
                      |...+..++|||||++||.++.+     .+|++||+.+++.+.. ..+.  ..+..++|+|  | +.|+.++.++.    
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~--~~~~~~~wsp--D-~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKW--VKFSGLAWLG--N-DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEE--EESCCCEEST--T-SEEEEEECCCC----
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCC--ceeccEEEEC--C-CEEEEEEecCccccc
Confidence            44578899999999999876543     4699999999887653 2222  1146889999  9 88887776654    


Q ss_pred             ----------EEEEECCCCCCCCCCccccccce-EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCccc
Q 022870           88 ----------VKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV  156 (291)
Q Consensus        88 ----------i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (291)
                                |++|++.++......+....... ....                                       +.|
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~---------------------------------------~~~  275 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG---------------------------------------ASV  275 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE---------------------------------------EEE
T ss_pred             ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE---------------------------------------EEE
Confidence                      78888876542111111111000 0000                                       559


Q ss_pred             CCCCCcEEEEecCC---cCeEEEEeCCCc--ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC--
Q 022870          157 PAEGPKYMAVAGEQ---LSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE--  229 (291)
Q Consensus       157 ~~~~~~~~~~~g~~---d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~--  229 (291)
                      +|+|+.+++.+...   ...|++||+.++  ++...+.        .+....    ...  +.|+   |. .|+..+.  
T Consensus       276 SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~~~~----~~~--~~~d---g~-~l~~~s~~~  337 (741)
T 1yr2_A          276 SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI--------PDLKAQ----WDF--VDGV---GD-QLWFVSGDG  337 (741)
T ss_dssp             CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE--------CSSSSC----EEE--EEEE---TT-EEEEEECTT
T ss_pred             CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec--------CCCCce----EEE--Eecc---CC-EEEEEECCC
Confidence            99998877655432   358999999876  3134444        222211    111  3355   44 4544443  


Q ss_pred             --CCcEEEEEccCCC-CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC-CCcee
Q 022870          230 --DGSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD-HSTVS  287 (291)
Q Consensus       230 --dg~i~vwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~-~~~~~  287 (291)
                        ++.|.+||+.++. .....+..+...+.+++|+ ++.++++...|+..++|.++ +++..
T Consensus       338 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~  398 (741)
T 1yr2_A          338 APLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA  398 (741)
T ss_dssp             CTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred             CCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence              4569999988631 2233334445567778888 55678888889988877654 34433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.51  E-value=6.1e-12  Score=109.48  Aligned_cols=205  Identities=14%  Similarity=0.048  Sum_probs=133.6

Q ss_pred             eeEEEEcCCCCEEEEecCCCe----------------EEEEeCCCCeE--EEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870           21 VTDVCFHQTKPILFAGTTGGE----------------LRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQ   82 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg~----------------v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~   82 (291)
                      +..++|+|||+.|+.++.++.                |++|++.+++.  ...+........+..+.|+|  ||++|+.+
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~  250 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLS  250 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEE
Confidence            678999999999998887765                99999988752  22233322223478999999  99988876


Q ss_pred             eC-----CCeEEEEECCC------CCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCC
Q 022870           83 GR-----DGTVKCWDIEN------GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD  151 (291)
Q Consensus        83 ~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (291)
                      +.     +..|.+||+.+      +..... .+........                                       
T Consensus       251 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~l~~~~~~~~---------------------------------------  290 (710)
T 2xdw_A          251 IREGCDPVNRLWYCDLQQESNGITGILKWV-KLIDNFEGEY---------------------------------------  290 (710)
T ss_dssp             EECSSSSCCEEEEEEGGGSSSSSCSSCCCE-EEECSSSSCE---------------------------------------
T ss_pred             EEccCCCccEEEEEECcccccccCCccceE-EeeCCCCcEE---------------------------------------
Confidence            64     56899999976      321100 0000000000                                       


Q ss_pred             CCcccCCCCCcEEEEecC--CcCeEEEEeCCCcce--eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee
Q 022870          152 SKDDVPAEGPKYMAVAGE--QLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG  227 (291)
Q Consensus       152 ~~~~~~~~~~~~~~~~g~--~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g  227 (291)
                        ..|+|+|..+++.+..  .++.|.+||+.++..  ...+.        .+..  ...+..+. |.++   +. ++++.
T Consensus       291 --~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~~--~~~~~~~~-~~~~---~~-lv~~~  353 (710)
T 2xdw_A          291 --DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--------PEHE--KDVLEWVA-CVRS---NF-LVLCY  353 (710)
T ss_dssp             --EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--------CCCS--SCEEEEEE-EETT---TE-EEEEE
T ss_pred             --EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--------CCCC--CCeEEEEE-EEcC---CE-EEEEE
Confidence              1267788877765432  134799999987642  23343        2211  12445565 7754   43 77888


Q ss_pred             cCCCc--EEEEEccCCCCceeeccccccceeEEEeecCCCeeE-Ee---cCCCeEEEEEcCCCc
Q 022870          228 YEDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SG---GADQKIVLYNLDHST  285 (291)
Q Consensus       228 ~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~---s~dg~i~vw~~~~~~  285 (291)
                      ..++.  |++||+.+ ++.+..+..+.+.+..+.+++++..++ +.   ...+.|++||+.+++
T Consensus       354 ~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          354 LHDVKNTLQLHDLAT-GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EETTEEEEEEEETTT-CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EECCEEEEEEEECCC-CCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            88874  56677756 666777777788899999999887665 22   235789999998876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.47  E-value=6.4e-10  Score=86.10  Aligned_cols=238  Identities=4%  Similarity=-0.078  Sum_probs=141.8

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      .+..+...+.+++++++|.+.++...++.|.+||.. ++.. .+........+.++++.+  ++.++++...++.|..||
T Consensus         9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~   84 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRIT   84 (299)
T ss_dssp             ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEEC
T ss_pred             cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEEC
Confidence            344566789999999999887777778999999987 5543 332221124589999999  888777777788999999


Q ss_pred             CCCCCCCCCCccccc--cceEEEEEeecccCccceecc-CCCCceeeecccCccccccCCCC-CC---cccCCCCCcEEE
Q 022870           93 IENGGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCD-SK---DDVPAEGPKYMA  165 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~  165 (291)
                      .. ++..   .+...  ........+.  ......... .......++. ............ ..   +++++++. +++
T Consensus        85 ~~-g~~~---~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v  156 (299)
T 2z2n_A           85 KK-GIIK---EYTLPNPDSAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWF  156 (299)
T ss_dssp             TT-SCEE---EEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEE
T ss_pred             CC-CcEE---EEeCCCcCCCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEE
Confidence            76 2211   11111  1112222222  111122211 1222333333 222111111111 11   78889885 444


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                       +...++.|..||. +++... +...      ..    ...+..+. +.++   |. +.++...++.|.+||. + ++..
T Consensus       157 -~~~~~~~i~~~~~-~g~~~~-~~~~------~~----~~~~~~i~-~~~~---g~-l~v~~~~~~~i~~~~~-~-g~~~  216 (299)
T 2z2n_A          157 -TENQNNAIGRITE-SGDITE-FKIP------TP----ASGPVGIT-KGND---DA-LWFVEIIGNKIGRITT-S-GEIT  216 (299)
T ss_dssp             -EETTTTEEEEECT-TCCEEE-EECS------ST----TCCEEEEE-ECTT---SS-EEEEETTTTEEEEECT-T-CCEE
T ss_pred             -EeCCCCEEEEEcC-CCcEEE-eeCC------CC----CCcceeEE-ECCC---CC-EEEEccCCceEEEECC-C-CcEE
Confidence             3444688999999 555433 2110      11    22345665 8876   54 5666666889999998 5 4432


Q ss_pred             e-eccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          246 T-AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       246 ~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      . .+..+...+.+++++++|+++++...++.|..||.+
T Consensus       217 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          217 EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            2 233345678999999999977777678899999984

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.46  E-value=1.6e-11  Score=97.41  Aligned_cols=185  Identities=12%  Similarity=0.089  Sum_probs=118.0

Q ss_pred             eeEEEEcCCCCEEEEecC---------------------------CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeec
Q 022870           21 VTDVCFHQTKPILFAGTT---------------------------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS   73 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~---------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~   73 (291)
                      +..++|+|+|+.|+.++.                           ...|.+||+.+++.+..+.. . .  +..+.|+| 
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~--~~~~~~sp-  180 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-R--FSSGIWHR-  180 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-T--TCEEEEET-
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-C--cccccCCC-
Confidence            899999999998887763                           25799999998877455554 2 3  88999999 


Q ss_pred             CCCCeEEEEeCCC-------eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccc
Q 022870           74 IGLNKVISQGRDG-------TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT  146 (291)
Q Consensus        74 ~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (291)
                       +| +++++..++       ...+|.+.+++..     .+... .  ..                               
T Consensus       181 -dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-----~l~~~-~--~~-------------------------------  219 (347)
T 2gop_A          181 -DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-----KMFEK-V--SF-------------------------------  219 (347)
T ss_dssp             -TE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-----EEEEE-E--SE-------------------------------
T ss_pred             -Ce-EEEEEecccccccccccccEEEeCCCceE-----EeccC-c--ce-------------------------------
Confidence             98 777776542       3445544432210     11100 0  00                               


Q ss_pred             cCCCCCCcccCCCCCcEEEEecCC------cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeee-EEEecCCCCC
Q 022870          147 DSLCDSKDDVPAEGPKYMAVAGEQ------LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA-VQAYLPSKSQ  219 (291)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~g~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~  219 (291)
                             ..++|+|+.+++.+...      ...|.+||  +++.. .+..       .+    ...+.. +. |+ +   
T Consensus       220 -------~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~-------~~----~~~~~~~~~-~s-d---  273 (347)
T 2gop_A          220 -------YAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILD-------EV----DRGVGQAKI-KD-G---  273 (347)
T ss_dssp             -------EEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESST-------TC----CSEEEEEEE-ET-T---
T ss_pred             -------eeECCCCCEEEEEEccccCCccccceEEEEC--CCceE-eccc-------cC----CcccCCccE-Ec-C---
Confidence                   11468888776544221      25788888  44433 3321       22    223443 54 87 5   


Q ss_pred             CceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeE-EEEEcCCCc
Q 022870          220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKI-VLYNLDHST  285 (291)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i-~vw~~~~~~  285 (291)
                      +  ++++++.++.+++| +.+ ++. ..+..+...|.+++|++  .++++++.++.. .+|.++ ++
T Consensus       274 g--~~~~~~~~~~~~l~-~~~-g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          274 K--VYFTLFEEGSVNLY-IWD-GEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             E--EEEEEEETTEEEEE-EES-SSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred             c--EEEEEecCCcEEEE-EcC-Cce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence            4  78888899999999 884 555 34444578899999999  567777766654 777776 54

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=1.6e-10  Score=93.69  Aligned_cols=209  Identities=12%  Similarity=-0.013  Sum_probs=134.0

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC--eEEEEECCCC
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENG   96 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~   96 (291)
                      .....|+|+++++++++...++.|++||..++..........   ... ++|++  +++.|+++..++  .|.+|+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~---~~~-ia~~~--~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK---GGK-PAVTK--DKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC---BCB-CEECT--TSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC---CCc-eeEec--CCCcEEEEecCCCceEEEEEcCCC
Confidence            357899999999888888888999999998777665544322   234 99999  888888888766  7888887654


Q ss_pred             CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  176 (291)
                      ....    .+       ......                           ....-..++++|++..+++ + ..++.|+.
T Consensus       205 ~~~~----~~-------g~~~~~---------------------------~~~~p~~iav~p~~g~lyv-~-d~~~~I~~  244 (409)
T 3hrp_A          205 WAPT----RI-------GQLGST---------------------------FSGKIGAVALDETEEWLYF-V-DSNKNFGR  244 (409)
T ss_dssp             TCEE----EE-------EECCTT---------------------------SCSCCCBCEECTTSSEEEE-E-CTTCEEEE
T ss_pred             ceeE----Ee-------eeccch---------------------------hcCCcEEEEEeCCCCeEEE-E-ECCCcEEE
Confidence            3211    00       000000                           0000001778996556665 3 34789999


Q ss_pred             EeCCCcceeeEecccccCCCCCCCCCcceeee-eEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc---
Q 022870          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM-AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL---  252 (291)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~---  252 (291)
                      ||..++... .+...   ...+...   .... .++ |+|++  +. ++++-..++.|+.|+...  . +..+.++.   
T Consensus       245 ~d~~~~~~~-~~~~~---~~~g~~~---~~P~~~ia-~~p~~--g~-lyv~d~~~~~I~~~~~~g--~-~~~~~g~~~~~  310 (409)
T 3hrp_A          245 FNVKTQEVT-LIKQL---ELSGSLG---TNPGPYLI-YYFVD--SN-FYMSDQNLSSVYKITPDG--E-CEWFCGSATQK  310 (409)
T ss_dssp             EETTTCCEE-EEEEC---CCCSCCC---CSSCCEEE-EETTT--TE-EEEEETTTTEEEEECTTC--C-EEEEEECTTCC
T ss_pred             EECCCCCEE-EEecc---cccCCCC---CCccccEE-EeCCC--CE-EEEEeCCCCEEEEEecCC--C-EEEEEeCCCCC
Confidence            999877532 22100   0001111   0112 565 99952  43 667777889999999763  2 33333322   


Q ss_pred             ------------cceeEEEeecCCCeeEEec-CCCeEEEEEcCCCcee
Q 022870          253 ------------EPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTVS  287 (291)
Q Consensus       253 ------------~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~~~~~~~  287 (291)
                                  .....++++++|+++++-+ .++.|+.|++.++++.
T Consensus       311 g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          311 TVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS  358 (409)
T ss_dssp             SCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred             CcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence                        3478999999999888888 8999999998777643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.44  E-value=3.7e-10  Score=87.71  Aligned_cols=209  Identities=9%  Similarity=0.036  Sum_probs=129.6

Q ss_pred             ecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           14 LRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      +..+..---+..|+++ +.++++...++.|..||..+++. ..+.. .  ..+.++++++  +++++++ . ++.|.+||
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~-~--~~~~~i~~~~--dG~l~v~-~-~~~l~~~d   79 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTM-D--APVSSVALRQ--SGGYVAT-I-GTKFCALN   79 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEEC-S--SCEEEEEEBT--TSSEEEE-E-TTEEEEEE
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeC-C--CceEEEEECC--CCCEEEE-E-CCeEEEEE
Confidence            3334445567899994 55677778889999999987765 33332 2  4489999999  8885444 4 56899999


Q ss_pred             CCCCCCCCCCccccccc---eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC
Q 022870           93 IENGGLSSNPSLTIKTN---SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (291)
                      .++++...  +......   .....                                       ++++|+|+.++...+.
T Consensus        80 ~~~g~~~~--~~~~~~~~~~~~~~d---------------------------------------i~~d~dG~l~~~~~~~  118 (297)
T 3g4e_A           80 WKEQSAVV--LATVDNDKKNNRFND---------------------------------------GKVDPAGRYFAGTMAE  118 (297)
T ss_dssp             TTTTEEEE--EEECCTTCSSEEEEE---------------------------------------EEECTTSCEEEEEEEC
T ss_pred             CCCCcEEE--EEecCCCCCCCCCCC---------------------------------------EEECCCCCEEEecCCc
Confidence            88764311  1110000   00000                                       5588888744322221


Q ss_pred             ---------CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc-
Q 022870          170 ---------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR-  239 (291)
Q Consensus       170 ---------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~-  239 (291)
                               ..+.|..+|.. ++......             .......++ |+|+   ++.++++.+.++.|.+||+. 
T Consensus       119 ~~~~~~~~~~~~~l~~~d~~-g~~~~~~~-------------~~~~pngi~-~spd---g~~lyv~~~~~~~i~~~~~d~  180 (297)
T 3g4e_A          119 ETAPAVLERHQGALYSLFPD-HHVKKYFD-------------QVDISNGLD-WSLD---HKIFYYIDSLSYSVDAFDYDL  180 (297)
T ss_dssp             CSBTTBCCTTCEEEEEECTT-SCEEEEEE-------------EESBEEEEE-ECTT---SCEEEEEEGGGTEEEEEEECT
T ss_pred             ccccccccCCCcEEEEEECC-CCEEEEee-------------ccccccceE-EcCC---CCEEEEecCCCCcEEEEeccC
Confidence                     12345555543 33222222             112345565 9998   54355667778999999984 


Q ss_pred             -CCCCc-----eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          240 -NPGIP-----LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       240 -~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                       + +..     ...+..+...+.+++++++|++.++...++.|.+||.++++++..+
T Consensus       181 ~~-G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i  236 (297)
T 3g4e_A          181 QT-GQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV  236 (297)
T ss_dssp             TT-CCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred             CC-CcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence             3 332     2233334467889999999998888777889999999988877654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.44  E-value=7.9e-14  Score=111.65  Aligned_cols=187  Identities=14%  Similarity=0.077  Sum_probs=105.3

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccccc
Q 022870           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (291)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  108 (291)
                      ++..+++++.||.|+.||..+|+.+..++.  ..  +.+..+..  ++..+++++.||.|+.||.++++....  .....
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~--~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~~w~--~~~~~   79 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DP--VLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEGLTK--LPFTI   79 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CC--SCCCC-------CCEEECTTTCCEEEC-----CCSEE--CSCCH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CC--ceecceEc--CCCEEEEeCCCCEEEEEECCCCceeee--eeccC
Confidence            566899999999999999999999988776  22  55555556  667888889999999999988865431  11110


Q ss_pred             ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEe
Q 022870          109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (291)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~  188 (291)
                      ...      ....                                ..+. .+..++  +|+.|+.++.||.++++.+..+
T Consensus        80 ~~~------~~~s--------------------------------p~~~-~~~~v~--~g~~dg~v~a~D~~tG~~~w~~  118 (369)
T 2hz6_A           80 PEL------VQAS--------------------------------PCRS-SDGILY--MGKKQDIWYVIDLLTGEKQQTL  118 (369)
T ss_dssp             HHH------HTTC--------------------------------SCC------CC--CCEEEEEEEEECCC--------
T ss_pred             ccc------cccC--------------------------------ceEe-cCCEEE--EEeCCCEEEEEECCCCcEEEEe
Confidence            000      0000                                0111 223333  4666899999999999988776


Q ss_pred             cccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCC---C
Q 022870          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC---N  265 (291)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~---~  265 (291)
                      ..        +.        ... ++|+   +. .+++++.|+.|+.||.++ ++.+..+..+.  ....+++++.   .
T Consensus       119 ~~--------~~--------~~~-~~p~---~~-~v~~~~~dg~v~a~d~~t-G~~~W~~~~~~--~~~~~~~~~~~~~~  174 (369)
T 2hz6_A          119 SS--------AF--------ADS-LSPS---TS-LLYLGRTEYTITMYDTKT-RELRWNATYFD--YAASLPEDDVDYKM  174 (369)
T ss_dssp             -----------------------------------EEEEEEEEEEECCCSSS-SSCCCEEEEEE--ECCBCCCCCTTCCC
T ss_pred             cC--------CC--------ccc-cccc---CC-EEEEEecCCEEEEEECCC-CCEEEeEeccc--ccCccccCCccccc
Confidence            62        21        112 5664   33 788889999999999998 77766655322  2333444432   3


Q ss_pred             eeEEecCCCeEEEEEcCCCceee
Q 022870          266 GGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       266 ~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      .++.++.||.|+.||.++++.+-
T Consensus       175 ~v~~~~~dg~v~a~d~~tG~~~W  197 (369)
T 2hz6_A          175 SHFVSNGDGLVVTVDSESGDVLW  197 (369)
T ss_dssp             CEEEEETSCEEEEECTTTCCEEE
T ss_pred             eEEEECCCCEEEEEECCCCcEEE
Confidence            57778889999999999988763

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.42  E-value=1.8e-11  Score=106.96  Aligned_cols=85  Identities=9%  Similarity=0.004  Sum_probs=64.9

Q ss_pred             CCceEEecCCccc-----eeEEEEcCCCCEEEEecCC---------CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeec
Q 022870            8 PDPVAVLRGHRAS-----VTDVCFHQTKPILFAGTTG---------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS   73 (291)
Q Consensus         8 ~~~~~~l~~h~~~-----v~~l~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~   73 (291)
                      +++...+.+|...     ...++|||||++|+.++.+         +.+.+||+.+++... +..+.  ..+...+|+| 
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~--~~~~~~~~SP-  121 (740)
T 4a5s_A           46 GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIP--NNTQWVTWSP-  121 (740)
T ss_dssp             CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCC--TTEEEEEECS-
T ss_pred             CceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCC--CcceeeEECC-
Confidence            3455566777543     2347889999999998876         566799999987653 44454  4499999999 


Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCCC
Q 022870           74 IGLNKVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        74 ~~~~~l~s~~~dg~i~iwd~~~~~~   98 (291)
                       ||+.|+.+. |+.|++||+.+++.
T Consensus       122 -dG~~la~~~-~~~i~~~~~~~~~~  144 (740)
T 4a5s_A          122 -VGHKLAYVW-NNDIYVKIEPNLPS  144 (740)
T ss_dssp             -STTCEEEEE-TTEEEEESSTTSCC
T ss_pred             -CCCEEEEEE-CCeEEEEECCCCce
Confidence             999998885 68999999987653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.39  E-value=9.4e-11  Score=93.03  Aligned_cols=256  Identities=6%  Similarity=-0.062  Sum_probs=145.0

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEec----------CCCeEEEEeCCCCeEEEEEeeecCC-----cceEEEEEeec
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPS   73 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~   73 (291)
                      +.+.++..-..+  .+.++||+++++.+.          .++.|.+||+.+++.+.++......     .....++++| 
T Consensus        57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp-  133 (368)
T 1mda_H           57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-  133 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-
T ss_pred             eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC-
Confidence            445555544445  799999999998875          3789999999999999998764100     1246899999 


Q ss_pred             CCCCeEEEEeC--CCeEEE--EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeeccc-----Cccc
Q 022870           74 IGLNKVISQGR--DGTVKC--WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-----GETV  144 (291)
Q Consensus        74 ~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  144 (291)
                       ||++++++..  +..|.+  +|..+   ..  .......    ..+.+............+....++...     .+..
T Consensus       134 -DGk~lyVan~~~~~~v~V~~iD~~t---v~--~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~  203 (368)
T 1mda_H          134 -SSACLLFFLFGSSAAAGLSVPGASD---DQ--LTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             -TSSCEEEEECSSSCEEEEEETTTEE---EE--EEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             -CCCEEEEEccCCCCeEEEEEEchhh---ce--EEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence             9999998864  467888  99876   11  1111100    000111111111112222233334433     1111


Q ss_pred             cc---cCC-CCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcc--eeeEecccccCCCCCCCCCcceeeeeEEEecCCCC
Q 022870          145 DT---DSL-CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (291)
Q Consensus       145 ~~---~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  218 (291)
                      ..   ... +....+ .+++..++.++ .  +.+.+.|.....  .+..+....  ...............+. |+|+  
T Consensus       204 ~~~t~~i~vg~~P~~-~~~~~~~~~vs-~--~~V~viD~~~~~~~v~~~~~~~~--~~~~~~~~~p~g~~~v~-~s~d--  274 (368)
T 1mda_H          204 AQCTGAQNCSSQAAQ-ANYPGMLVWAV-A--SSILQGDIPAAGATMKAAIDGNE--SGRKADNFRSAGFQMVA-KLKN--  274 (368)
T ss_dssp             CCSCTTSCBCSCCEE-ETTTTEEEECB-S--SCCEEEECCSSCCEEECCCCSSC--THHHHTTEEECSSSCEE-EETT--
T ss_pred             EEeeeeeeCCCCccc-cccCCEEEEEc-C--CEEEEEECCCCcceEEEEEEecc--ccccccccccCcceeeE-EcCC--
Confidence            00   000 111122 55565555433 3  789999987543  222221100  00000000000001133 8888  


Q ss_pred             CCceEEEee-c---C-----CCcEEEEEccCCCCceeeccccccceeEEEeecCCC-eeEEec-CCCeEEEEEcCCCcee
Q 022870          219 QGFVNVLAG-Y---E-----DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGG-ADQKIVLYNLDHSTVS  287 (291)
Q Consensus       219 ~g~~~l~~g-~---~-----dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s-~dg~i~vw~~~~~~~~  287 (291)
                       ++ .++++ .   .     ++.+.++|+.+ .+.+..+.... ...+|+|+++++ ++++.. .++.|.++|+.+.+.+
T Consensus       275 -g~-~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          275 -TD-GIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             -TT-EEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             -CC-EEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence             33 34433 2   2     23566999998 78888887543 689999999998 456666 5999999999999998


Q ss_pred             eee
Q 022870          288 HCV  290 (291)
Q Consensus       288 ~~~  290 (291)
                      .++
T Consensus       351 ~~I  353 (368)
T 1mda_H          351 SSV  353 (368)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            775

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.39  E-value=9e-11  Score=92.53  Aligned_cols=126  Identities=14%  Similarity=0.116  Sum_probs=84.9

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCC
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG  231 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg  231 (291)
                      ++++|+|. +++ +...++.|++||..... .+..+....   ..+...........++ ++|+  +|. ++++.+ .++
T Consensus        96 ia~d~~g~-l~v-~d~~~~~v~~~~~~g~~~~~~~~~~~~---~~g~~~~~~~~P~~ia-~~~~--~g~-lyv~d~~~~~  166 (329)
T 3fvz_A           96 LSIDTDGN-YWV-TDVALHQVFKLDPHSKEGPLLILGRSM---QPGSDQNHFCQPTDVA-VEPS--TGA-VFVSDGYCNS  166 (329)
T ss_dssp             EEECTTSC-EEE-EETTTTEEEEECTTCSSCCSEEESBTT---BCCCSTTCCSSEEEEE-ECTT--TCC-EEEEECSSCC
T ss_pred             EEECCCCC-EEE-EECCCCEEEEEeCCCCeEEEEEecccC---CCCCCccccCCCcEEE-EeCC--CCe-EEEEeCCCCC
Confidence            77899987 444 56667999999986543 444443100   0011111223456776 9983  144 666665 689


Q ss_pred             cEEEEEccCCCCceeeccc----------cccceeEEEeecC-CCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          232 SILVWDIRNPGIPLTAMKV----------HLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~----------h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      .|++||..  +..+..+..          +-..+.+|+++|+ +.++++...++.|++|+.++++++..+
T Consensus       167 ~I~~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~  234 (329)
T 3fvz_A          167 RIVQFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI  234 (329)
T ss_dssp             EEEEECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             eEEEEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence            99999943  666666642          2234899999998 888888889999999999988877654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.38  E-value=1.8e-11  Score=97.42  Aligned_cols=170  Identities=13%  Similarity=0.050  Sum_probs=114.1

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-----------EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +++.+++++...++++|+.++ +++|++++.+           ...... +.  . |+.++| .   ++.|+++ .++.|
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp--~-V~~l~f-d---~~~L~v~-~~~~l  108 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IP--D-VIFVCF-H---GDQVLVS-TRNAL  108 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CT--T-EEEEEE-E---TTEEEEE-ESSEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CC--C-eeEEEE-C---CCEEEEE-cCCcE
Confidence            689999999998999999985 6669865322           112222 22  4 999999 4   4888888 88999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      ++||+.+.....  ..........  .                                      +.+.+  +.+++  +
T Consensus       109 ~v~dv~sl~~~~--~~~~~~~~v~--~--------------------------------------i~~~~--p~~av--~  142 (388)
T 1xip_A          109 YSLDLEELSEFR--TVTSFEKPVF--Q--------------------------------------LKNVN--NTLVI--L  142 (388)
T ss_dssp             EEEESSSTTCEE--EEEECSSCEE--E--------------------------------------EEECS--SEEEE--E
T ss_pred             EEEEchhhhccC--ccceeeccee--e--------------------------------------EEecC--CCEEE--E
Confidence            999998764211  0000000100  0                                      11222  23433  3


Q ss_pred             CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc--ee
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP--LT  246 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~--~~  246 (291)
                      ..||.|.+||+.+++... +               ...+.+++ |+|.   |   ++.|..||.+++|+... ...  ..
T Consensus       143 ~~dG~L~v~dl~~~~~~~-~---------------~~~Vs~v~-WSpk---G---~~vg~~dg~i~~~~~~~-~~~~~k~  198 (388)
T 1xip_A          143 NSVNDLSALDLRTKSTKQ-L---------------AQNVTSFD-VTNS---Q---LAVLLKDRSFQSFAWRN-GEMEKQF  198 (388)
T ss_dssp             ETTSEEEEEETTTCCEEE-E---------------EESEEEEE-ECSS---E---EEEEETTSCEEEEEEET-TEEEEEE
T ss_pred             ECCCCEEEEEccCCcccc-c---------------cCCceEEE-EcCC---c---eEEEEcCCcEEEEcCCC-ccccccc
Confidence            458999999999877543 2               22467776 9998   3   67788999999998886 442  33


Q ss_pred             ec------c---ccccceeEEEeecCCCeeEE
Q 022870          247 AM------K---VHLEPVLCLSIDESCNGGIS  269 (291)
Q Consensus       247 ~~------~---~h~~~v~~~~~~~~~~~l~s  269 (291)
                      .+      .   +|...|.+|.|.+++.++++
T Consensus       199 ~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          199 EFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             eecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            44      2   47789999999999998876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.38  E-value=1.1e-10  Score=91.99  Aligned_cols=219  Identities=10%  Similarity=-0.100  Sum_probs=134.7

Q ss_pred             cCCCeEEEEeCCCCeEEEEEee----ecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccc-cceE
Q 022870           37 TTGGELRIWDTVQHRTVSSSWV----HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIK-TNSY  111 (291)
Q Consensus        37 ~~dg~v~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~  111 (291)
                      +.++.|.++|.++++....+..    ..-......+.+..   +..+++...++.|.+||..+++...    ++. ....
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~---~~lyv~~~~~~~v~viD~~t~~~~~----~i~~~~~p   86 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD---GIGWIVVNNSHVIFAIDINTFKEVG----RITGFTSP   86 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET---TEEEEEEGGGTEEEEEETTTCCEEE----EEECCSSE
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC---CEEEEEEcCCCEEEEEECcccEEEE----EcCCCCCC
Confidence            3489999999999887654311    01002257777754   3566667778999999999887643    221 1122


Q ss_pred             EEEEeecccCccceecc-CCCCceeeecccCccccccCCCC------CC--cccCCCCCcEEEEecCCcCeEEEEeCCCc
Q 022870          112 HFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCD------SK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTA  182 (291)
Q Consensus       112 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~  182 (291)
                      ....++...  ...... ....+..++............+.      ..  +++  ++..++++....++.|.++|+.++
T Consensus        87 ~~i~~~~~g--~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A           87 RYIHFLSDE--KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             EEEEEEETT--EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT
T ss_pred             cEEEEeCCC--eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC
Confidence            222232222  222222 34555666666554332211111      11  666  455666543224789999999999


Q ss_pred             ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC----------CcEEEEEccCCCCceeecccc-
Q 022870          183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----------GSILVWDIRNPGIPLTAMKVH-  251 (291)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d----------g~i~vwd~~~~~~~~~~~~~h-  251 (291)
                      +....+..       +      .....+. +.|+   |+ +++++..+          +.|.++|..+ ++....+... 
T Consensus       163 ~~~~~i~~-------g------~~p~~i~-~~~d---G~-l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~~  223 (328)
T 3dsm_A          163 KVVDELTI-------G------IQPTSLV-MDKY---NK-MWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFKL  223 (328)
T ss_dssp             EEEEEEEC-------S------SCBCCCE-ECTT---SE-EEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEECCT
T ss_pred             eEEEEEEc-------C------CCccceE-EcCC---CC-EEEEECCCccCCccccCCceEEEEECCC-CeEEEEEecCC
Confidence            88877762       1      1123444 8887   55 55555444          7899999987 6666555432 


Q ss_pred             ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      ...+..++++|+++.|..+..  .|.+||..++++.
T Consensus       224 g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~  257 (328)
T 3dsm_A          224 GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP  257 (328)
T ss_dssp             TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred             CCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence            236899999999888877654  8999999988764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.37  E-value=8.8e-11  Score=101.86  Aligned_cols=205  Identities=10%  Similarity=0.069  Sum_probs=124.8

Q ss_pred             CCccceeEEEEcCCCCEEEE-----ecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC----
Q 022870           16 GHRASVTDVCFHQTKPILFA-----GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG----   86 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----   86 (291)
                      +|...+..++|||||++||-     |+.+.+|++||+.+++.+.. ....  .....++|+   |++.|+.++.+.    
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~--~k~~~~~Ws---Dg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD--VKFSGISWL---GNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE--EESCCCEEE---TTTEEEEEESSCCC--
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC--ceeccEEEe---CCCEEEEEEecCcccc
Confidence            45667889999999998883     44446899999999986543 1111  012466787   346777666663    


Q ss_pred             ---------eEEEEECCCCCCCCCCcccccc-ceE-EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcc
Q 022870           87 ---------TVKCWDIENGGLSSNPSLTIKT-NSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDD  155 (291)
Q Consensus        87 ---------~i~iwd~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (291)
                               .|++|++.+.......++.... ... ...                                       +.
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~---------------------------------------~~  240 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVG---------------------------------------AT  240 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEE---------------------------------------EE
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEE---------------------------------------EE
Confidence                     3888998776432211222211 110 000                                       44


Q ss_pred             cCCCCCcEEEEecC--CcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC---
Q 022870          156 VPAEGPKYMAVAGE--QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---  229 (291)
Q Consensus       156 ~~~~~~~~~~~~g~--~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---  229 (291)
                      ++|+|+.+++....  .+..|+++|+.++. ....+.        .+.......      ++++   |..+++....   
T Consensus       241 ~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~--------~~~~~~~~~------~~~~---g~~l~~~t~~~~~  303 (693)
T 3iuj_A          241 VTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ--------GDLDADVSL------VDNK---GSTLYLLTNRDAP  303 (693)
T ss_dssp             ECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE--------CSSSSCEEE------EEEE---TTEEEEEECTTCT
T ss_pred             EcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe--------CCCCceEEE------Eecc---CCEEEEEECCCCC
Confidence            89999988765442  23589999998764 344444        222211111      4444   3325555544   


Q ss_pred             CCcEEEEEccCCCCc--eeeccccccceeEEEeecCCCeeEEecCC-C--eEEEEEcCCCc
Q 022870          230 DGSILVWDIRNPGIP--LTAMKVHLEPVLCLSIDESCNGGISGGAD-Q--KIVLYNLDHST  285 (291)
Q Consensus       230 dg~i~vwd~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-g--~i~vw~~~~~~  285 (291)
                      .+.|..+|+.+ +..  ...+..|...+.  .|+++++.|+....+ +  .|++|+++.+.
T Consensus       304 ~~~l~~~d~~~-~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~  361 (693)
T 3iuj_A          304 NRRLVTVDAAN-PGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR  361 (693)
T ss_dssp             TCEEEEEETTS-CCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred             CCEEEEEeCCC-CCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe
Confidence            36899999987 433  345666666665  788888887766554 3  68999988654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.37  E-value=4.6e-09  Score=81.22  Aligned_cols=236  Identities=7%  Similarity=-0.030  Sum_probs=135.6

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      +...+.+++++++|.+.++...++.|..||.. ++. ..+........+.++++.+  ++.++++...++.|..||. ++
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g  129 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP--NGDIWFTEMNGNRIGRITD-DG  129 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT-TC
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC--CCCEEEEecCCceEEEECC-CC
Confidence            45678999999999888887778899999976 433 2333221123489999999  8877777777889999998 44


Q ss_pred             CCCCCCccccc--cceEEEEEeecccCccceecc-CCCCceeeecccCccccccCCCCC-C---cccCCCCCcEEEEecC
Q 022870           97 GLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDS-K---DDVPAEGPKYMAVAGE  169 (291)
Q Consensus        97 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~g~  169 (291)
                      +...   ....  ........+..  ........ .......++. ............. .   +++++++. +++ +..
T Consensus       130 ~~~~---~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v-~~~  201 (299)
T 2z2n_A          130 KIRE---YELPNKGSYPSFITLGS--DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWF-VEI  201 (299)
T ss_dssp             CEEE---EECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEE-EET
T ss_pred             CEEE---ecCCCCCCCCceEEEcC--CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEE-Ecc
Confidence            3211   1111  11112222221  11112111 1223333333 2222111111111 1   88889886 444 343


Q ss_pred             CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce-eec
Q 022870          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TAM  248 (291)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~-~~~  248 (291)
                      .++.|.+||. +++.. .+...      .    ....+.++. +.++   |+ ++++...++.|..||..  +... ..+
T Consensus       202 ~~~~i~~~~~-~g~~~-~~~~~------~----~~~~~~~i~-~~~~---g~-l~v~~~~~~~i~~~d~~--g~~~~~~~  262 (299)
T 2z2n_A          202 IGNKIGRITT-SGEIT-EFKIP------T----PNARPHAIT-AGAG---ID-LWFTEWGANKIGRLTSN--NIIEEYPI  262 (299)
T ss_dssp             TTTEEEEECT-TCCEE-EEECS------S----TTCCEEEEE-ECST---TC-EEEEETTTTEEEEEETT--TEEEEEEC
T ss_pred             CCceEEEECC-CCcEE-EEECC------C----CCCCceeEE-ECCC---CC-EEEeccCCceEEEECCC--CceEEEeC
Confidence            4688999999 66533 23210      1    123456666 8877   54 55665578899999983  4322 123


Q ss_pred             cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      ..+...+.++++ +++.+.++.+ .+.+..++.+++++
T Consensus       263 ~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~~  298 (299)
T 2z2n_A          263 QIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDNM  298 (299)
T ss_dssp             SSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC----
T ss_pred             CCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcccC
Confidence            344567899999 8888777665 56788888877643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.36  E-value=3.8e-09  Score=83.08  Aligned_cols=198  Identities=9%  Similarity=0.001  Sum_probs=120.9

Q ss_pred             ceeEEEEcCC-CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870           20 SVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        20 ~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~   98 (291)
                      -..+.+|+|+ +.++++...++.|..||..+++.. .+.. .  ..+.++++.+  +++++++. .+ .|.+||..+++.
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~--~~v~~i~~~~--dg~l~v~~-~~-gl~~~d~~~g~~  121 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-P--FMGSALAKIS--DSKQLIAS-DD-GLFLRDTATGVL  121 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-S--SCEEEEEEEE--TTEEEEEE-TT-EEEEEETTTCCE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-C--CcceEEEEeC--CCeEEEEE-CC-CEEEEECCCCcE
Confidence            3467899996 556677778899999998877643 3332 2  3499999999  87766654 44 499999877653


Q ss_pred             CCCCcccccc---ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC-----C
Q 022870           99 SSNPSLTIKT---NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-----Q  170 (291)
Q Consensus        99 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~  170 (291)
                      ..  ......   ......                                       ++++|+|.. ++++..     .
T Consensus       122 ~~--~~~~~~~~~~~~~~~---------------------------------------i~~d~~G~l-~v~~~~~~~~~~  159 (326)
T 2ghs_A          122 TL--HAELESDLPGNRSND---------------------------------------GRMHPSGAL-WIGTMGRKAETG  159 (326)
T ss_dssp             EE--EECSSTTCTTEEEEE---------------------------------------EEECTTSCE-EEEEEETTCCTT
T ss_pred             EE--EeeCCCCCCCCCCCC---------------------------------------EEECCCCCE-EEEeCCCcCCCC
Confidence            11  100000   000000                                       558888864 433321     1


Q ss_pred             cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc--CCC-Cc---
Q 022870          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR--NPG-IP---  244 (291)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~--~~~-~~---  244 (291)
                      .+.|..+|  +++.. .+..       .     ......+. |+|+   |+.++++.+.++.|.+||+.  + + ..   
T Consensus       160 ~~~l~~~~--~g~~~-~~~~-------~-----~~~~~~i~-~s~d---g~~lyv~~~~~~~I~~~d~~~~~-Gl~~~~~  219 (326)
T 2ghs_A          160 AGSIYHVA--KGKVT-KLFA-------D-----ISIPNSIC-FSPD---GTTGYFVDTKVNRLMRVPLDART-GLPTGKA  219 (326)
T ss_dssp             CEEEEEEE--TTEEE-EEEE-------E-----ESSEEEEE-ECTT---SCEEEEEETTTCEEEEEEBCTTT-CCBSSCC
T ss_pred             ceEEEEEe--CCcEE-EeeC-------C-----CcccCCeE-EcCC---CCEEEEEECCCCEEEEEEccccc-CCcccCc
Confidence            24566666  44432 2221       0     11234565 9998   44244555678899999986  4 3 21   


Q ss_pred             --eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          245 --LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       245 --~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                        ...+......+.+++++++|++.++...++.|.+|+. +++.+.
T Consensus       220 ~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~  264 (326)
T 2ghs_A          220 EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIA  264 (326)
T ss_dssp             EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEE
T ss_pred             eEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEE
Confidence              2223333456788999999987777766789999998 455544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.33  E-value=1.4e-08  Score=78.52  Aligned_cols=235  Identities=7%  Similarity=-0.046  Sum_probs=140.2

Q ss_pred             CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870           16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~   95 (291)
                      .....+.++++.++|.+.++...++.|.+||.. ++... +........+.++++.+  ++.++++...++.|..||.. 
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-
Confidence            345678999999999888887778999999987 55443 32222224489999998  87777777668899999987 


Q ss_pred             CCCCCCCccccc--cceEEEEEeecccCccceeccC-CCCceeeecccCccccccCCCC-CC---cccCCCCCcEEEEec
Q 022870           96 GGLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQA-NEPKDCYEREVGETVDTDSLCD-SK---DDVPAEGPKYMAVAG  168 (291)
Q Consensus        96 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~g  168 (291)
                      ++..   .+...  ........+.  .......... ......++.. ........... ..   +++++++. +++ +.
T Consensus        92 g~~~---~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v-~~  163 (300)
T 2qc5_A           92 GGFT---EYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWF-TE  163 (300)
T ss_dssp             SCEE---EEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEE-EE
T ss_pred             CCeE---EecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEE-Ee
Confidence            4331   11111  1112222222  1111222111 2223333333 22221112211 11   78889887 444 34


Q ss_pred             CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee-e
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-A  247 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~-~  247 (291)
                      ..++.|..||. +++... +...      ..    ...+..+. +.++   |. +.++....+.|.+||. + +.... .
T Consensus       164 ~~~~~i~~~~~-~g~~~~-~~~~------~~----~~~~~~i~-~d~~---g~-l~v~~~~~~~i~~~~~-~-g~~~~~~  224 (300)
T 2qc5_A          164 NQNNSIGRITN-TGKLEE-YPLP------TN----AAAPVGIT-SGND---GA-LWFVEIMGNKIGRITT-T-GEISEYD  224 (300)
T ss_dssp             TTTTEEEEECT-TCCEEE-EECS------ST----TCCEEEEE-ECTT---SS-EEEEETTTTEEEEECT-T-CCEEEEE
T ss_pred             cCCCeEEEECC-CCcEEE-eeCC------CC----CCCcceEE-ECCC---CC-EEEEccCCCEEEEEcC-C-CcEEEEE
Confidence            44678999998 554432 3210      11    22355665 8876   54 5666666778999998 3 44332 2


Q ss_pred             ccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      +..+...+.++++++++++.++...++.|..|+.+
T Consensus       225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             CCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            33345678999999999977777677899999984

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.33  E-value=3.2e-10  Score=88.38  Aligned_cols=236  Identities=8%  Similarity=-0.012  Sum_probs=131.9

Q ss_pred             ceEEecCCccceeEEEEcCCCC-EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           10 PVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .+..+..+........|+|+++ +++++..++.|..|+. +++ ...+..+.  ..+..+++.+  +|+++++...++.|
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~--~~~~gl~~d~--dG~l~v~~~~~~~v  109 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDAT--AFTNGNAVDA--QQRLVHCEHGRRAI  109 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESC--SCEEEEEECT--TSCEEEEETTTTEE
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCC--CccceeeECC--CCCEEEEECCCCEE
Confidence            3445555556678899999988 6778888999999997 454 33444444  3389999999  88866665566889


Q ss_pred             EEEECCCCCCCCCCccccccce----EEEEEeecccCccceec-----cC-----------CCCceeeeccc--Cccccc
Q 022870           89 KCWDIENGGLSSNPSLTIKTNS----YHFCKLSLVKEPYANAK-----QA-----------NEPKDCYEREV--GETVDT  146 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~-----------~~~~~~~~~~~--~~~~~~  146 (291)
                      .+|+.. ++...  ........    .....+...  ......     ..           .....++.++.  ......
T Consensus       110 ~~~~~~-g~~~~--~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~  184 (305)
T 3dr2_A          110 TRSDAD-GQAHL--LVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM  184 (305)
T ss_dssp             EEECTT-SCEEE--EECEETTEECSCCCCEEECTT--SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred             EEECCC-CCEEE--EEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence            999976 33211  10000000    001111111  111110     00           01123444433  221111


Q ss_pred             c-CCCCCCcccCCCCCcEEEEecCC----cCeEEEEeCCCccee--eEecccccCCCCCCCCCcceeeeeEEEecCCCCC
Q 022870          147 D-SLCDSKDDVPAEGPKYMAVAGEQ----LSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (291)
Q Consensus       147 ~-~~~~~~~~~~~~~~~~~~~~g~~----d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  219 (291)
                      . +.....++|+|+++.++++....    ++.|.+||+......  ..+..       .    ..+....+. +.++   
T Consensus       185 ~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-------~----~~~~pdgi~-~d~~---  249 (305)
T 3dr2_A          185 ADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-------V----PDGLPDGFC-VDRG---  249 (305)
T ss_dssp             EEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-------C----SSSCCCSEE-ECTT---
T ss_pred             ecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-------C----CCCCCCeEE-ECCC---
Confidence            1 11111189999998776543221    268999998765411  11110       0    011223444 7776   


Q ss_pred             CceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEE
Q 022870          220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIV  277 (291)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~  277 (291)
                      |.  |.+++.+ .|.+||..  ++.+..+..+. .+.+++|+++++.|..++.++..+
T Consensus       250 G~--lwv~~~~-gv~~~~~~--g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          250 GW--LWSSSGT-GVCVFDSD--GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             SC--EEECCSS-EEEEECTT--SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CC--EEEecCC-cEEEECCC--CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            54  4444444 49999985  67777776554 589999999988887777665433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.33  E-value=1e-09  Score=82.58  Aligned_cols=210  Identities=8%  Similarity=-0.015  Sum_probs=136.5

Q ss_pred             ceEEecCCccc--eeEEEEcCCCCEEEEecC--CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870           10 PVAVLRGHRAS--VTDVCFHQTKPILFAGTT--GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus        10 ~~~~l~~h~~~--v~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      .+.++. |...  ...++|++++.+.++.+.  ++.|.+.|+.+++.+..+...... ....+++..  + ...++.-.+
T Consensus        11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-fgeGi~~~g--~-~lyv~t~~~   85 (266)
T 2iwa_A           11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-FGEGLTLLN--E-KLYQVVWLK   85 (266)
T ss_dssp             EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-CEEEEEEET--T-EEEEEETTC
T ss_pred             EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-ceEEEEEeC--C-EEEEEEecC
Confidence            345553 5533  579999998755555443  689999999999999887654321 234555543  2 444455568


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                      +.+.++|..+.+...    ++...       ....                                 ..++++|..+++
T Consensus        86 ~~v~viD~~t~~v~~----~i~~g-------~~~g---------------------------------~glt~Dg~~l~v  121 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIK----NFTHQ-------MKDG---------------------------------WGLATDGKILYG  121 (266)
T ss_dssp             SEEEEEETTTTEEEE----EEECC-------SSSC---------------------------------CEEEECSSSEEE
T ss_pred             CEEEEEECCCCcEEE----EEECC-------CCCe---------------------------------EEEEECCCEEEE
Confidence            899999999876533    11111       0000                                 336678888886


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                      +.+  ++.|.++|..+.+.+..+..       +.....-.....+. |. +   |+ ..+....++.|.+.|..+ ++.+
T Consensus       122 s~g--s~~l~viD~~t~~v~~~I~V-------g~~~~p~~~~nele-~~-d---g~-lyvn~~~~~~V~vID~~t-g~V~  185 (266)
T 2iwa_A          122 SDG--TSILYEIDPHTFKLIKKHNV-------KYNGHRVIRLNELE-YI-N---GE-VWANIWQTDCIARISAKD-GTLL  185 (266)
T ss_dssp             ECS--SSEEEEECTTTCCEEEEEEC-------EETTEECCCEEEEE-EE-T---TE-EEEEETTSSEEEEEETTT-CCEE
T ss_pred             ECC--CCeEEEEECCCCcEEEEEEE-------CCCCcccccceeEE-EE-C---CE-EEEecCCCCeEEEEECCC-CcEE
Confidence            543  68999999999988887763       11000111234454 65 3   54 455555688999999998 8877


Q ss_pred             eecccc-------------ccceeEEEeecCCC-eeEEecCCCeEEEEEcCCC
Q 022870          246 TAMKVH-------------LEPVLCLSIDESCN-GGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       246 ~~~~~h-------------~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~  284 (291)
                      ..+...             ....++|+|+|+++ +++++...+.+.+-++...
T Consensus       186 ~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          186 GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            776531             13568999999876 5567777889988887653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.32  E-value=5.6e-10  Score=86.05  Aligned_cols=196  Identities=10%  Similarity=0.055  Sum_probs=113.5

Q ss_pred             CccceeEEEE-cCCCCEEEEecC-CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870           17 HRASVTDVCF-HQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        17 h~~~v~~l~~-~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~   94 (291)
                      |...+.++++ .+++.++++... ++.|.+|| .+++.+..+..... ..+.++++.|  +++++++...++.|.+||..
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~-~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~  150 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATIL-QHPRGVTVDN--KGRIIVVECKVMRVIIFDQN  150 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTC-SCEEEEEECT--TSCEEEEETTTTEEEEECTT
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccC-CCceEEEEeC--CCCEEEEECCCCEEEEEcCC
Confidence            4567899999 577766666643 88999999 56777766643221 3489999999  88877787788999999965


Q ss_pred             CCCCCCCCccc--cccceEEEEEeecccCccceec-cCCCCceeeecccCccccccCCCC-CC---cccCCCCCcEEEEe
Q 022870           95 NGGLSSNPSLT--IKTNSYHFCKLSLVKEPYANAK-QANEPKDCYEREVGETVDTDSLCD-SK---DDVPAEGPKYMAVA  167 (291)
Q Consensus        95 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~  167 (291)
                      .. ...  .+.  ..........+...  ...... .....+..++............++ ..   ++++++|. +++ +
T Consensus       151 g~-~~~--~~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v-~  223 (286)
T 1q7f_A          151 GN-VLH--KFGCSKHLEFPNGVVVNDK--QEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGE-ILI-A  223 (286)
T ss_dssp             SC-EEE--EEECTTTCSSEEEEEECSS--SEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCC-EEE-E
T ss_pred             CC-EEE--EeCCCCccCCcEEEEECCC--CCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCC-EEE-E
Confidence            32 211  111  01111222222221  111111 122334444443221111111221 11   89999985 444 3


Q ss_pred             cCCcC-eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          168 GEQLS-EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       168 g~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      ...++ .|.+||.. ++.+..+..        +..  ...+.+++ +.|+   |+ ++++ +.++.|++|++..
T Consensus       224 ~~~~~~~i~~~~~~-g~~~~~~~~--------~~~--~~~~~~i~-~~~~---g~-l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          224 DNHNNFNLTIFTQD-GQLISALES--------KVK--HAQCFDVA-LMDD---GS-VVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             ECSSSCEEEEECTT-SCEEEEEEE--------SSC--CSCEEEEE-EETT---TE-EEEE-ETTTEEEEEECSC
T ss_pred             eCCCCEEEEEECCC-CCEEEEEcc--------cCC--CCcceeEE-ECCC---Cc-EEEE-CCCCeEEEEEccc
Confidence            44454 99999964 566666652        211  12355676 9987   54 5555 5689999999875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.31  E-value=6.1e-11  Score=94.39  Aligned_cols=149  Identities=7%  Similarity=0.013  Sum_probs=100.7

Q ss_pred             ceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC-----C--CCCccccccceEEEEEeecccCccceeccCCCCceee
Q 022870           64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL-----S--SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY  136 (291)
Q Consensus        64 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (291)
                      ++..+++++  ...++++|+.++ +.+|++.....     .  .++..........                        
T Consensus        39 ~~nlLais~--~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~------------------------   91 (388)
T 1xip_A           39 SLQNLDISN--SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVI------------------------   91 (388)
T ss_dssp             CCBCEEEET--TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEE------------------------
T ss_pred             cccEEEEcC--CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCCee------------------------
Confidence            489999999  888999999885 66699764320     0  0000000000000                        


Q ss_pred             ecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC
Q 022870          137 EREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS  216 (291)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  216 (291)
                                      .++|  ++..+++ +  .++.|++||+++........        .|..    .+.++. +.+.
T Consensus        92 ----------------~l~f--d~~~L~v-~--~~~~l~v~dv~sl~~~~~~~--------~~~~----~v~~i~-~~~p  137 (388)
T 1xip_A           92 ----------------FVCF--HGDQVLV-S--TRNALYSLDLEELSEFRTVT--------SFEK----PVFQLK-NVNN  137 (388)
T ss_dssp             ----------------EEEE--ETTEEEE-E--ESSEEEEEESSSTTCEEEEE--------ECSS----CEEEEE-ECSS
T ss_pred             ----------------EEEE--CCCEEEE-E--cCCcEEEEEchhhhccCccc--------eeec----ceeeEE-ecCC
Confidence                            0567  6655543 3  57999999998876555444        3322    234554 5443


Q ss_pred             CCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          217 KSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       217 ~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                            .+++++.||.|.+||+.+ +....    +...|++++|+|+|  ++.|..||.+++|+.+.+.+
T Consensus       138 ------~~av~~~dG~L~v~dl~~-~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~  194 (388)
T 1xip_A          138 ------TLVILNSVNDLSALDLRT-KSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM  194 (388)
T ss_dssp             ------EEEEEETTSEEEEEETTT-CCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred             ------CEEEEECCCCEEEEEccC-Ccccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence                  488889999999999997 54432    45689999999999  57788999999999888775

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.30  E-value=3.4e-09  Score=82.22  Aligned_cols=191  Identities=11%  Similarity=0.035  Sum_probs=117.7

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeec--CCcceEEEEEeecCCCCeEEEEeCC---------
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS--AAHGIVSVATGPSIGLNKVISQGRD---------   85 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~d---------   85 (291)
                      +...+.+++++++|+++++.  ++.|.+||.++++.........  ....+..+++.|  +|+++++...+         
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~--dG~l~~~~~~~~~~~~~~~~  127 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP--AGRYFAGTMAEETAPAVLER  127 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT--TSCEEEEEEECCSBTTBCCT
T ss_pred             CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC--CCCEEEecCCcccccccccC
Confidence            35678999999999855543  5679999998876543332211  113478999999  88866654322         


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                      ..-.+|.+.......    ...     .....+..                                 ++|+|+++.+++
T Consensus       128 ~~~~l~~~d~~g~~~----~~~-----~~~~~png---------------------------------i~~spdg~~lyv  165 (297)
T 3g4e_A          128 HQGALYSLFPDHHVK----KYF-----DQVDISNG---------------------------------LDWSLDHKIFYY  165 (297)
T ss_dssp             TCEEEEEECTTSCEE----EEE-----EEESBEEE---------------------------------EEECTTSCEEEE
T ss_pred             CCcEEEEEECCCCEE----EEe-----eccccccc---------------------------------eEEcCCCCEEEE
Confidence            233455544321100    000     00000000                                 669999987765


Q ss_pred             EecCCcCeEEEEeC--CCccee--eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          166 VAGEQLSEVEIWDL--NTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       166 ~~g~~d~~i~~wd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                       +.+.++.|.+||+  .++...  ..+..        . ....+....+. +.++   |. +.++...++.|..||..+ 
T Consensus       166 -~~~~~~~i~~~~~d~~~G~~~~~~~~~~--------~-~~~~~~p~g~~-~d~~---G~-lwva~~~~~~v~~~d~~t-  229 (297)
T 3g4e_A          166 -IDSLSYSVDAFDYDLQTGQISNRRSVYK--------L-EKEEQIPDGMC-IDAE---GK-LWVACYNGGRVIRLDPVT-  229 (297)
T ss_dssp             -EEGGGTEEEEEEECTTTCCEEEEEEEEE--------C-CGGGCEEEEEE-EBTT---SC-EEEEEETTTEEEEECTTT-
T ss_pred             -ecCCCCcEEEEeccCCCCcccCcEEEEE--------C-CCCCCCCCeeE-ECCC---CC-EEEEEcCCCEEEEEcCCC-
Confidence             4555789999987  455431  11210        0 00123455665 8877   54 666666778899999987 


Q ss_pred             CCceeeccccccceeEEEee-cCCCeeEE
Q 022870          242 GIPLTAMKVHLEPVLCLSID-ESCNGGIS  269 (291)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~-~~~~~l~s  269 (291)
                      ++.+..+..+...+++++|. |+++.|..
T Consensus       230 G~~~~~i~~p~~~~t~~~f~g~d~~~L~v  258 (297)
T 3g4e_A          230 GKRLQTVKLPVDKTTSCCFGGKNYSEMYV  258 (297)
T ss_dssp             CCEEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred             ceEEEEEECCCCCceEEEEeCCCCCEEEE
Confidence            78888888777789999997 77766543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.28  E-value=2.3e-10  Score=99.37  Aligned_cols=194  Identities=8%  Similarity=-0.020  Sum_probs=115.0

Q ss_pred             cCCCCEEEEecCCC-----eEEEEeCCCCeEEEEEeeec----CCcceEEEEEeecCCCCeEE-----EEeCCCeEEEEE
Q 022870           27 HQTKPILFAGTTGG-----ELRIWDTVQHRTVSSSWVHS----AAHGIVSVATGPSIGLNKVI-----SQGRDGTVKCWD   92 (291)
Q Consensus        27 ~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~-----s~~~dg~i~iwd   92 (291)
                      +|+|.+++....++     .+.+.+...++....+....    +...+.+++|+|  ||++|+     .|+.+..|++||
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SP--DG~~la~~~~~~G~~~~~i~v~d  153 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSW--DGKKVAFAQKPNAADEAVLHVID  153 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECT--TSSEEEEEEEETTCSCCEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECC--CCCEEEEEECCCCCceEEEEEEE
Confidence            37888877655433     34444544444333332111    112489999999  999988     444557899999


Q ss_pred             CCCCCCC-CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870           93 IENGGLS-SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        93 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (291)
                      +.+++.. ..   .+....                                        ...++|+|||+.++.++  .|
T Consensus       154 l~tg~~~~~~---~~~~~~----------------------------------------~~~~~wspDg~~l~~~~--~d  188 (695)
T 2bkl_A          154 VDSGEWSKVD---VIEGGK----------------------------------------YATPKWTPDSKGFYYEW--LP  188 (695)
T ss_dssp             TTTCCBCSSC---CBSCCT----------------------------------------TCCCEECTTSSEEEEEE--CC
T ss_pred             CCCCCCcCCc---ccCccc----------------------------------------ccceEEecCCCEEEEEE--ec
Confidence            9988653 10   000000                                        00166999998777543  23


Q ss_pred             Ce-------------EEEEeCCCcce--eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC----c
Q 022870          172 SE-------------VEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG----S  232 (291)
Q Consensus       172 ~~-------------i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg----~  232 (291)
                      ..             |++|++.+++.  ...+...      .+    ......+. |+|+   |+ +|+.++.++    .
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~------~~----~~~~~~~~-~SpD---G~-~l~~~~~~~~~~~~  253 (695)
T 2bkl_A          189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT------GD----PTTFLQSD-LSRD---GK-YLFVYILRGWSEND  253 (695)
T ss_dssp             CCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC------CC----TTCEEEEE-ECTT---SC-CEEEEEEETTTEEE
T ss_pred             CCCCCccccCCCCCEEEEEECCCCchhceEEEecC------CC----CEEEEEEE-ECCC---CC-EEEEEEeCCCCceE
Confidence            33             99999988763  2222210      11    23455666 9998   55 566555444    6


Q ss_pred             EEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec---CCCeEEEEEcCCCc
Q 022870          233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG---ADQKIVLYNLDHST  285 (291)
Q Consensus       233 i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s---~dg~i~vw~~~~~~  285 (291)
                      |++||..+ + ....+..+...+....| +++.+++...   .++.|.+||+++++
T Consensus       254 l~~~~~~~-~-~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          254 VYWKRPGE-K-DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             EEEECTTC-S-SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             EEEEcCCC-C-ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            77776543 3 45556666666666666 4555445444   25899999998764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.27  E-value=1.3e-09  Score=95.35  Aligned_cols=204  Identities=12%  Similarity=0.064  Sum_probs=126.4

Q ss_pred             eeEEEEcCCCCEEEEecCCCe--------------EEEEeCCCCeE--EEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870           21 VTDVCFHQTKPILFAGTTGGE--------------LRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg~--------------v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      +..++|+|| +.|+.++.|+.              |++|++.++..  ...+........+.++.|+|  ||++|+..+.
T Consensus       211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~  287 (741)
T 1yr2_A          211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSS  287 (741)
T ss_dssp             SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEE
T ss_pred             eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEE
Confidence            367899999 88888776554              89999977652  22333322212488999999  9998887765


Q ss_pred             CC-----eEEEEECCCCCCC-CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCC
Q 022870           85 DG-----TVKCWDIENGGLS-SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA  158 (291)
Q Consensus        85 dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (291)
                      ++     .|.+||+.++... ...+ ........                                         ..++|
T Consensus       288 ~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~-----------------------------------------~~~~~  325 (741)
T 1yr2_A          288 EGTDPVNTVHVARVTNGKIGPVTAL-IPDLKAQW-----------------------------------------DFVDG  325 (741)
T ss_dssp             CTTCSCCEEEEEEEETTEECCCEEE-ECSSSSCE-----------------------------------------EEEEE
T ss_pred             ccCCCcceEEEEECCCCCCcccEEe-cCCCCceE-----------------------------------------EEEec
Confidence            44     8999998765211 1001 00100000                                         01336


Q ss_pred             CCCcEEEEecC--CcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870          159 EGPKYMAVAGE--QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (291)
Q Consensus       159 ~~~~~~~~~g~--~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (291)
                      +|+.+++.+..  .++.|.+||+.++. ....+..       .+    ...+..+. +. .   +. ++++...|+..+|
T Consensus       326 dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-------~~----~~~l~~~~-~~-~---~~-lv~~~~~dg~~~l  388 (741)
T 1yr2_A          326 VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-------ES----KDNLESVG-IA-G---NR-LFASYIHDAKSQV  388 (741)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-------CC----SSEEEEEE-EE-B---TE-EEEEEEETTEEEE
T ss_pred             cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-------CC----CCeEEEEE-EE-C---CE-EEEEEEECCEEEE
Confidence            77777665432  24679999998752 3333331       22    12233444 54 1   33 7888888998777


Q ss_pred             EEccCCCCceeeccc-cccceeEEEeecCCCeeE----EecCCCeEEEEEcCCCce
Q 022870          236 WDIRNPGIPLTAMKV-HLEPVLCLSIDESCNGGI----SGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       236 wd~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~----s~s~dg~i~vw~~~~~~~  286 (291)
                      |.+...+.....+.. +.+.+..+.+++++..|+    +....++|++||+.+++.
T Consensus       389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            766522555566654 367788999999988665    334458999999988763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.23  E-value=9.6e-10  Score=87.17  Aligned_cols=222  Identities=9%  Similarity=-0.067  Sum_probs=126.1

Q ss_pred             cceeEEEEcCCCCEEEEec--CCCeEEEEeCCCCeEEEEEee-----ecCCcceEEEEEeecCCCCeEEEEeC-----CC
Q 022870           19 ASVTDVCFHQTKPILFAGT--TGGELRIWDTVQHRTVSSSWV-----HSAAHGIVSVATGPSIGLNKVISQGR-----DG   86 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg   86 (291)
                      .....++++++|+++++..  .++.++||.+.+++.. .+..     ......+..+++.+  +++++++-..     ++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~--~g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDG--NGIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECS--SSEEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcC--CCcEEEEcCCCCcCCCC
Confidence            6789999999999888853  2343556655455432 2211     01113489999999  8665554433     57


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCC-CCcccCCCCCcEEE
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD-SKDDVPAEGPKYMA  165 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  165 (291)
                      .|.+||+.+++...  .+.+.....                                   ....+ ..+++++++..+++
T Consensus        94 ~i~~~d~~tg~~~~--~~~~~~~~~-----------------------------------~~~~~~~~v~vd~~~g~~yv  136 (343)
T 2qe8_A           94 KLVAWDTLNNQLSR--VIYLPPPIT-----------------------------------LSNSFVNDLAVDLIHNFVYI  136 (343)
T ss_dssp             EEEEEETTTTEEEE--EEECCTTTS-----------------------------------CTTCCCCEEEEETTTTEEEE
T ss_pred             eEEEEECCCCeEEE--EEECChhhc-----------------------------------ccccccceEEEecCCCEEEE
Confidence            89999998775322  111100000                                   00000 01667776555555


Q ss_pred             EecC---CcCeEEEEeCCCcceeeEeccc-ccCC-CC-----CCCC----C------cceeeeeEEEecCCCCCCceEEE
Q 022870          166 VAGE---QLSEVEIWDLNTAERCTRLHQN-SCGG-SP-----NFSS----K------GRGMCMAVQAYLPSKSQGFVNVL  225 (291)
Q Consensus       166 ~~g~---~d~~i~~wd~~~~~~~~~~~~~-~~~~-~~-----~~~~----~------~~~~~~~~~~~~p~~~~g~~~l~  225 (291)
                       +..   .++.|.+||+.+++....+... ...+ ..     +..-    .      .......++ |+|+   |+ .|+
T Consensus       137 -td~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia-~s~d---g~-~ly  210 (343)
T 2qe8_A          137 -SDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV-LDAE---NE-WLY  210 (343)
T ss_dssp             -EECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE-ECTT---SC-EEE
T ss_pred             -EcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE-eccC---CC-EEE
Confidence             433   5789999999988766555310 0000 00     0000    0      001245676 9997   54 566


Q ss_pred             eecCCC-cEEEEEccC--CCC-----cee--eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          226 AGYEDG-SILVWDIRN--PGI-----PLT--AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       226 ~g~~dg-~i~vwd~~~--~~~-----~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      .+..++ .|+.++...  .+.     ...  ...++.....+++++++|+++++...++.|.+||.+++++
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~  281 (343)
T 2qe8_A          211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY  281 (343)
T ss_dssp             EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence            665544 666665421  011     011  1123445677899999999999999999999999955553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.23  E-value=4.1e-09  Score=83.68  Aligned_cols=198  Identities=11%  Similarity=-0.005  Sum_probs=128.6

Q ss_pred             EEEcCCCCEEEEecC-----CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe----------CCCeE
Q 022870           24 VCFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTV   88 (291)
Q Consensus        24 l~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i   88 (291)
                      ....|++..++....     ++.|.+.|..+++.+..+....  .+ . ++++|  ||++++++.          .++.|
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~--~P-~-va~sp--DG~~lyVan~~~~r~~~G~~~~~V  111 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LP-N-PVVAD--DGSFIAHASTVFSRIARGERTDYV  111 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS--SC-E-EEECT--TSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC--CC-c-EEECC--CCCEEEEEcccccccccCCCCCEE
Confidence            455688888877755     6899999999999999987655  33 4 99999  999888765          36789


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCC-CCC-cccCCCCCcEEEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-DSK-DDVPAEGPKYMAV  166 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~  166 (291)
                      .+||..+.+...    ++.......                                 ...+ +.. ++|+|||++++++
T Consensus       112 sviD~~t~~v~~----~I~v~~g~r---------------------------------~~~g~~P~~~a~spDGk~lyVa  154 (386)
T 3sjl_D          112 EVFDPVTLLPTA----DIELPDAPR---------------------------------FLVGTYPWMTSLTPDGKTLLFY  154 (386)
T ss_dssp             EEECTTTCCEEE----EEEETTCCC---------------------------------CCBSCCGGGEEECTTSSEEEEE
T ss_pred             EEEECCCCeEEE----EEECCCccc---------------------------------cccCCCCceEEEcCCCCEEEEE
Confidence            999999876533    111000000                                 0000 000 6799999988765


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      ....++.|.++|+.+++.+.++..             .+ +.  . ..|.+  .+ .+++.+.||.+.+.++.+.++...
T Consensus       155 n~~~~~~VsVID~~t~~vv~tI~v-------------~g-~~--~-~~P~g--~~-~~~~~~~DG~~~~v~~~~~g~v~~  214 (386)
T 3sjl_D          155 QFSPAPAVGVVDLEGKAFKRMLDV-------------PD-CY--H-IFPTA--PD-TFFMHCRDGSLAKVAFGTEGTPEI  214 (386)
T ss_dssp             ECSSSCEEEEEETTTTEEEEEEEC-------------CS-EE--E-EEEEE--TT-EEEEEETTSCEEEEECCSSSCCEE
T ss_pred             EcCCCCeEEEEECCCCcEEEEEEC-------------CC-cc--e-eecCC--Cc-eeEEECCCCCEEEEECCCCCeEEE
Confidence            333368999999999999888862             11 11  1 23432  22 667888899999999875344322


Q ss_pred             ecccc----cccee-EEEee-cCCCeeEEecCCCeEEEEEcCCCc
Q 022870          247 AMKVH----LEPVL-CLSID-ESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       247 ~~~~h----~~~v~-~~~~~-~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      ....+    ..++. ...|. ++|++++ .+.+|.|.+.|+.++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~  258 (386)
T 3sjl_D          215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD  258 (386)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred             eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc
Confidence            11111    12222 24664 6776555 4558999999997654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.23  E-value=1.2e-08  Score=81.62  Aligned_cols=121  Identities=7%  Similarity=-0.100  Sum_probs=79.7

Q ss_pred             EEcCCCCEEEEecC--CC---eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe----------CCCeEE
Q 022870           25 CFHQTKPILFAGTT--GG---ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVK   89 (291)
Q Consensus        25 ~~~~~~~~l~s~~~--dg---~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~   89 (291)
                      ...|++.+++....  ..   +|.++|..+++.+..+....  .+  .++++|  |+++++.+.          .++.|.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~--~p--~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~  100 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF--LP--NPVAAH--SGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC--CC--CeEECC--CCCEEEEEeccccccccCCCCCeEE
Confidence            34467877777653  22   88999999999888776543  33  999999  999998875          367899


Q ss_pred             EEECCCCCCCCCCccccccc-eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC-CcccCCCCCcEEEEe
Q 022870           90 CWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS-KDDVPAEGPKYMAVA  167 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  167 (291)
                      +||..+.+...    .+... .....                                 ..... .++++|+|++++++.
T Consensus       101 viD~~t~~~~~----~i~~~~~~~~~---------------------------------~g~~p~~~~~spDG~~l~v~n  143 (373)
T 2mad_H          101 VFDPVTFLPIA----DIELPDAPRFD---------------------------------VGPYSWMNANTPNNADLLFFQ  143 (373)
T ss_pred             EEECCCCcEEE----EEECCCccccc---------------------------------cCCCccceEECCCCCEEEEEe
Confidence            99998765432    11110 00000                                 00000 066999998887643


Q ss_pred             cCCcCeEEEEeCCCcceeeE-ec
Q 022870          168 GEQLSEVEIWDLNTAERCTR-LH  189 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~-~~  189 (291)
                      ...++.|.++| .+++.+.. +.
T Consensus       144 ~~~~~~v~viD-~t~~~~~~~i~  165 (373)
T 2mad_H          144 FAAGPAVGLVV-QGGSSDDQLLS  165 (373)
T ss_pred             cCCCCeEEEEE-CCCCEEeEEcC
Confidence            22257899999 98887776 54

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.22  E-value=1.3e-09  Score=84.46  Aligned_cols=169  Identities=16%  Similarity=0.057  Sum_probs=106.1

Q ss_pred             EEEEEeeecCCcceEEEEEeecCCCC-eEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCC
Q 022870           52 TVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN  130 (291)
Q Consensus        52 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (291)
                      .+..+..+.  ....+++|+|  +++ +++++..++.|..||..++ . .  .+........ .                
T Consensus        19 ~~~~l~~~~--~~~eg~~~d~--~g~~l~~~~~~~~~i~~~~~~~~-~-~--~~~~~~~~~~-~----------------   73 (296)
T 3e5z_A           19 EARRLADGF--TWTEGPVYVP--ARSAVIFSDVRQNRTWAWSDDGQ-L-S--PEMHPSHHQN-G----------------   73 (296)
T ss_dssp             CCEEEECCC--SSEEEEEEEG--GGTEEEEEEGGGTEEEEEETTSC-E-E--EEESSCSSEE-E----------------
T ss_pred             cEEEEecCC--ccccCCeEeC--CCCEEEEEeCCCCEEEEEECCCC-e-E--EEECCCCCcc-e----------------
Confidence            334444444  3378999999  887 7778888999999998875 2 1  1111111000 0                


Q ss_pred             CCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeE
Q 022870          131 EPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV  210 (291)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (291)
                                             ++++++|. +++ +...++.|.+||..+++.......        ........+..+
T Consensus        74 -----------------------l~~~~dg~-l~v-~~~~~~~i~~~d~~~g~~~~~~~~--------~~~~~~~~~~~i  120 (296)
T 3e5z_A           74 -----------------------HCLNKQGH-LIA-CSHGLRRLERQREPGGEWESIADS--------FEGKKLNSPNDV  120 (296)
T ss_dssp             -----------------------EEECTTCC-EEE-EETTTTEEEEECSTTCCEEEEECE--------ETTEECCCCCCE
T ss_pred             -----------------------eeECCCCc-EEE-EecCCCeEEEEcCCCCcEEEEeec--------cCCCCCCCCCCE
Confidence                                   56889886 444 444468899999988775433321        111111234456


Q ss_pred             EEecCCCCCCceEEEe----ec-------------CCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC
Q 022870          211 QAYLPSKSQGFVNVLA----GY-------------EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD  273 (291)
Q Consensus       211 ~~~~p~~~~g~~~l~~----g~-------------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  273 (291)
                      . +.|+   |+ ++++    |+             ..+.|..++..  ++ +..+..+...+.+++|+|+++.|++.+.+
T Consensus       121 ~-~d~~---G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~  192 (296)
T 3e5z_A          121 C-LAPD---GS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGD  192 (296)
T ss_dssp             E-ECTT---SC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC-EEEEECCCSSEEEEEECTTSCEEEEETTT
T ss_pred             E-ECCC---CC-EEEECCccccccccccccccccCCCcEEEEECCC--CC-EEEeecCCCCCccEEECCCCCEEEEeCCC
Confidence            5 8887   55 6665    33             13455555543  33 34445556778999999999988888888


Q ss_pred             CeEEEEEcC-CCce
Q 022870          274 QKIVLYNLD-HSTV  286 (291)
Q Consensus       274 g~i~vw~~~-~~~~  286 (291)
                      +.|.+|+++ ++++
T Consensus       193 ~~i~~~~~~~~g~~  206 (296)
T 3e5z_A          193 NATHRYCLNARGET  206 (296)
T ss_dssp             TEEEEEEECSSSCE
T ss_pred             CeEEEEEECCCCcC
Confidence            999999997 4544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.22  E-value=5.7e-09  Score=84.61  Aligned_cols=207  Identities=10%  Similarity=0.026  Sum_probs=128.9

Q ss_pred             EEEcCCCCEEEEecCCC--eEEEEeCCCCeEEEEE---ee-ecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           24 VCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSS---WV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        24 l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      ++|++++..|+.+..++  .|.+|+...+.....+   .. ..  ..+.+++++|  ++..|+.+..++.|+.||..+..
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~--~~p~~iav~p--~~g~lyv~d~~~~I~~~d~~~~~  251 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS--GKIGAVALDE--TEEWLYFVDSNKNFGRFNVKTQE  251 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC--SCCCBCEECT--TSSEEEEECTTCEEEEEETTTCC
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc--CCcEEEEEeC--CCCeEEEEECCCcEEEEECCCCC
Confidence            89999999888887766  7999997765543333   11 22  3478899999  66777777788999999988654


Q ss_pred             CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEE
Q 022870           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW  177 (291)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~w  177 (291)
                      ...     +...       .... ..      +.       .         + ...++|+|++..+++ +...++.|+.|
T Consensus       252 ~~~-----~~~~-------~~~g-~~------~~-------~---------P-~~~ia~~p~~g~lyv-~d~~~~~I~~~  294 (409)
T 3hrp_A          252 VTL-----IKQL-------ELSG-SL------GT-------N---------P-GPYLIYYFVDSNFYM-SDQNLSSVYKI  294 (409)
T ss_dssp             EEE-----EEEC-------CCCS-CC------CC-------S---------S-CCEEEEETTTTEEEE-EETTTTEEEEE
T ss_pred             EEE-----Eecc-------cccC-CC------CC-------C---------c-cccEEEeCCCCEEEE-EeCCCCEEEEE
Confidence            210     0000       0000 00      00       0         0 001678997666665 45557899999


Q ss_pred             eCCCcceeeEecccccCCCCCCCC-----CcceeeeeEEEecCCCCCCceEEEeec-CCCcEEEEEccCCCCceeecccc
Q 022870          178 DLNTAERCTRLHQNSCGGSPNFSS-----KGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIPLTAMKVH  251 (291)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~h  251 (291)
                      |....  ...+....  ...+...     ..-.....++ +.|+   |+ ++++-. .++.|+.||+.+ +. +..+.++
T Consensus       295 ~~~g~--~~~~~g~~--~~~g~~dg~~~~~~~~~P~gia-~d~d---G~-lyvad~~~~~~I~~~~~~~-G~-v~~~~g~  363 (409)
T 3hrp_A          295 TPDGE--CEWFCGSA--TQKTVQDGLREEALFAQPNGMT-VDED---GN-FYIVDGFKGYCLRKLDILD-GY-VSTVAGQ  363 (409)
T ss_dssp             CTTCC--EEEEEECT--TCCSCBCEEGGGCBCSSEEEEE-ECTT---CC-EEEEETTTTCEEEEEETTT-TE-EEEEEEC
T ss_pred             ecCCC--EEEEEeCC--CCCCcCCCcccccEeCCCeEEE-EeCC---CC-EEEEeCCCCCEEEEEECCC-CE-EEEEeCC
Confidence            98654  22222100  0001100     0012356676 9987   55 677777 889999999765 43 3444443


Q ss_pred             ---------------ccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          252 ---------------LEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       252 ---------------~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                                     -....+|++++++.++++-..++.|+.++++
T Consensus       364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence                           2458899999999888888889999988764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.21  E-value=8.5e-09  Score=76.77  Aligned_cols=194  Identities=10%  Similarity=0.100  Sum_probs=123.6

Q ss_pred             eEEecCCccce--eEEEEcCCCCEEEEecCCC--eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCC
Q 022870           11 VAVLRGHRASV--TDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD   85 (291)
Q Consensus        11 ~~~l~~h~~~v--~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d   85 (291)
                      +.++ .|...-  ..|.|+ ++.++.+.+.+|  .|+++|+++++.+..+.....   .......+  +++.|+ ..-.+
T Consensus        34 v~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~---~FgeGit~--~g~~ly~ltw~~  106 (262)
T 3nol_A           34 VHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR---YFGEGISD--WKDKIVGLTWKN  106 (262)
T ss_dssp             EEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT---CCEEEEEE--ETTEEEEEESSS
T ss_pred             EEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc---cceeEEEE--eCCEEEEEEeeC
Confidence            4455 355443  779998 676667777665  899999999999988876432   33333333  334555 44468


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                      +.+.+||..+.+...    ++....        .                                 +..+++++..+++
T Consensus       107 ~~v~v~D~~t~~~~~----ti~~~~--------e---------------------------------G~glt~dg~~L~~  141 (262)
T 3nol_A          107 GLGFVWNIRNLRQVR----SFNYDG--------E---------------------------------GWGLTHNDQYLIM  141 (262)
T ss_dssp             SEEEEEETTTCCEEE----EEECSS--------C---------------------------------CCCEEECSSCEEE
T ss_pred             CEEEEEECccCcEEE----EEECCC--------C---------------------------------ceEEecCCCEEEE
Confidence            899999999887543    221110        0                                 0335567777776


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                      +.|  ++.|.++|..+.+.+..+...       .....-.....+. |. +   |+ ..+..-.+..|.+.|.++ ++.+
T Consensus       142 SdG--s~~i~~iDp~T~~v~~~I~V~-------~~g~~~~~lNELe-~~-~---G~-lyan~w~~~~I~vIDp~t-G~V~  205 (262)
T 3nol_A          142 SDG--TPVLRFLDPESLTPVRTITVT-------AHGEELPELNELE-WV-D---GE-IFANVWQTNKIVRIDPET-GKVT  205 (262)
T ss_dssp             CCS--SSEEEEECTTTCSEEEEEECE-------ETTEECCCEEEEE-EE-T---TE-EEEEETTSSEEEEECTTT-CBEE
T ss_pred             ECC--CCeEEEEcCCCCeEEEEEEec-------cCCccccccceeE-EE-C---CE-EEEEEccCCeEEEEECCC-CcEE
Confidence            544  578999999999988887631       0000011122343 54 2   54 555556788999999998 7776


Q ss_pred             eecccc------------ccceeEEEeecCCCeeEEecC
Q 022870          246 TAMKVH------------LEPVLCLSIDESCNGGISGGA  272 (291)
Q Consensus       246 ~~~~~h------------~~~v~~~~~~~~~~~l~s~s~  272 (291)
                      ..+...            ....++|+|+|+++.|...+.
T Consensus       206 ~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          206 GIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            655421            235689999998777765554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.20  E-value=7.3e-08  Score=74.47  Aligned_cols=232  Identities=9%  Similarity=-0.048  Sum_probs=133.2

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      +...+.++++.+++.+.++...++.|..+|.. ++.. .+........+.++++.+  ++.++++...++.|..||.. +
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g  134 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-G  134 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECC--CCCEEEEccCCCeEEEECCC-C
Confidence            34678999999999888877778899999987 5543 333221114489999998  88877777768899999987 4


Q ss_pred             CCCCCCccccc--cceEEEEEeecccCccceecc-CCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecC
Q 022870           97 GLSSNPSLTIK--TNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE  169 (291)
Q Consensus        97 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~  169 (291)
                      +...   ....  ........+...  ....... .......++. ..............    +++++++. +++ +..
T Consensus       135 ~~~~---~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v-~~~  206 (300)
T 2qc5_A          135 TIYE---YDLPNKGSYPAFITLGSD--NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWF-VEI  206 (300)
T ss_dssp             CEEE---EECSSTTCCEEEEEECTT--SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEE-EET
T ss_pred             CEEE---ccCCCCCCCceeEEECCC--CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEE-Ecc
Confidence            3221   1111  111122222211  1112111 1222333333 22211111111111    78888885 444 333


Q ss_pred             CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce-eec
Q 022870          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TAM  248 (291)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~-~~~  248 (291)
                      ..+.|.+||. +++.......       ..    ...+.++. +.++   |+ +.++...++.|..||..  ++.. ..+
T Consensus       207 ~~~~i~~~~~-~g~~~~~~~~-------~~----~~~~~~i~-~d~~---g~-l~v~~~~~~~i~~~~~~--g~~~~~~~  267 (300)
T 2qc5_A          207 MGNKIGRITT-TGEISEYDIP-------TP----NARPHAIT-AGKN---SE-IWFTEWGANQIGRITND--NTIQEYQL  267 (300)
T ss_dssp             TTTEEEEECT-TCCEEEEECS-------ST----TCCEEEEE-ECST---TC-EEEEETTTTEEEEECTT--SCEEEEEC
T ss_pred             CCCEEEEEcC-CCcEEEEECC-------CC----CCCceEEE-ECCC---CC-EEEeccCCCeEEEECCC--CcEEEEEC
Confidence            4578999998 4443322110       11    23355665 8877   54 55666667899999984  4332 223


Q ss_pred             cccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      ......+.+++++++|++.++.. . .|..++.+
T Consensus       268 ~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          268 QTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             CSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             CccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            33346689999999998666665 4 67777654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.17  E-value=3.1e-08  Score=77.87  Aligned_cols=187  Identities=12%  Similarity=0.067  Sum_probs=112.2

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeec--CCcceEEEEEeecCCCCeEEEEeC------CCeEE
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS--AAHGIVSVATGPSIGLNKVISQGR------DGTVK   89 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~------dg~i~   89 (291)
                      ...+.+++|+++|+++++. .+ .|.+||..+++.........  ....+..++++|  +|+++++...      .+.|.
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEE
Confidence            4578999999999877654 44 49999988877543322111  113488999999  8886665432      23454


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (291)
                      .++  +++..     .+..   .   ...   +.                             .++|+|+++.+++ +.+
T Consensus       165 ~~~--~g~~~-----~~~~---~---~~~---~~-----------------------------~i~~s~dg~~lyv-~~~  198 (326)
T 2ghs_A          165 HVA--KGKVT-----KLFA---D---ISI---PN-----------------------------SICFSPDGTTGYF-VDT  198 (326)
T ss_dssp             EEE--TTEEE-----EEEE---E---ESS---EE-----------------------------EEEECTTSCEEEE-EET
T ss_pred             EEe--CCcEE-----EeeC---C---Ccc---cC-----------------------------CeEEcCCCCEEEE-EEC
Confidence            455  33210     0000   0   000   00                             0568999987665 444


Q ss_pred             CcCeEEEEeCC--Cc-cee--eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          170 QLSEVEIWDLN--TA-ERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       170 ~d~~i~~wd~~--~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                      .++.|.+||+.  ++ +..  ..+..        . .........+. +.++   |. +.++...++.|.+||. + ++.
T Consensus       199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~--------~-~~~~~~p~gi~-~d~~---G~-lwva~~~~~~v~~~d~-~-g~~  262 (326)
T 2ghs_A          199 KVNRLMRVPLDARTGLPTGKAEVFID--------S-TGIKGGMDGSV-CDAE---GH-IWNARWGEGAVDRYDT-D-GNH  262 (326)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEE--------C-TTSSSEEEEEE-ECTT---SC-EEEEEETTTEEEEECT-T-CCE
T ss_pred             CCCEEEEEEcccccCCcccCceEEEE--------C-CCCCCCCCeeE-ECCC---CC-EEEEEeCCCEEEEECC-C-CCE
Confidence            56899999986  55 321  11210        0 00122344565 7776   54 5555556788999998 4 677


Q ss_pred             eeeccccccceeEEEee-cCCCeeEEe
Q 022870          245 LTAMKVHLEPVLCLSID-ESCNGGISG  270 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~-~~~~~l~s~  270 (291)
                      +..+..+...+++++|+ +++..|+.+
T Consensus       263 ~~~i~~~~~~~~~~af~g~d~~~L~vt  289 (326)
T 2ghs_A          263 IARYEVPGKQTTCPAFIGPDASRLLVT  289 (326)
T ss_dssp             EEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             EEEEECCCCCcEEEEEecCCCCEEEEE
Confidence            77777767789999998 887666433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.16  E-value=1.3e-08  Score=81.62  Aligned_cols=219  Identities=10%  Similarity=0.027  Sum_probs=129.2

Q ss_pred             CCCCCCceEEecC-------CccceeEEEEcCCCCEEEEecCC------CeEEEEeCCCCeEEEEEeeecCC-cceEEEE
Q 022870            4 RPPPPDPVAVLRG-------HRASVTDVCFHQTKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAA-HGIVSVA   69 (291)
Q Consensus         4 ~~~~~~~~~~l~~-------h~~~v~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~   69 (291)
                      .|..++..++++.       -...-..+..+|+| +++++..+      |.|.+.|.++.+.+..+.....+ .--..+.
T Consensus       116 ~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~  194 (462)
T 2ece_A          116 NPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFW  194 (462)
T ss_dssp             CTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEE
T ss_pred             CCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEE
Confidence            3444566666630       11234567888999 66666555      78999999999999988744322 1134688


Q ss_pred             EeecCCCCeEEEEe-------------------CCCeEEEEECCCCCCCCCCccccccc--eEEEEEeecccCccceecc
Q 022870           70 TGPSIGLNKVISQG-------------------RDGTVKCWDIENGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQ  128 (291)
Q Consensus        70 ~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  128 (291)
                      |+|  +++.+++..                   .+.+|.+||+.+++...    ++...  ......+.           
T Consensus       195 ~~p--~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~----tI~vg~~g~~P~~i~-----------  257 (462)
T 2ece_A          195 WNL--PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH----SLTLGEENRMALELR-----------  257 (462)
T ss_dssp             EET--TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE----EEESCTTEEEEEEEE-----------
T ss_pred             ECC--CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee----EEecCCCCCccceeE-----------
Confidence            899  888888874                   36899999999765432    22221  00000000           


Q ss_pred             CCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC-----CcCeEEEEeCCCcce--eeEecccccCCCCCCC-
Q 022870          129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-----QLSEVEIWDLNTAER--CTRLHQNSCGGSPNFS-  200 (291)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~-  200 (291)
                                               ++|+|++++.+++ +.     .+++|.+|....++.  .+.+..... ...+.. 
T Consensus       258 -------------------------f~~~Pdg~~aYV~-~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~-~v~~~lp  310 (462)
T 2ece_A          258 -------------------------PLHDPTKLMGFIN-MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAE-PLEGNLP  310 (462)
T ss_dssp             -------------------------ECSSTTCCEEEEE-EEEETTTCCEEEEEEEEETTEEEEEEEEEECCE-ECCSSCC
T ss_pred             -------------------------eeECCCCCEEEEE-EeeeccCCCceEEEEEecCCceeEEEEEeCCCc-ccccccc
Confidence                                     3369999877764 44     567888876654421  111110000 000000 


Q ss_pred             ------CCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC--ceeecccc-----------c---cceeEE
Q 022870          201 ------SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVH-----------L---EPVLCL  258 (291)
Q Consensus       201 ------~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~h-----------~---~~v~~~  258 (291)
                            .........+. ++|+   |+.+.++.-..+.|.+||+.+.++  .+..+.-.           .   +....+
T Consensus       311 ~~~~~f~~~~~~pa~I~-lS~D---GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~  386 (462)
T 2ece_A          311 EILKPFKAVPPLVTDID-ISLD---DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQML  386 (462)
T ss_dssp             GGGGGGTEECCCCCCEE-ECTT---SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCE
T ss_pred             ccccccccCCCceeEEE-ECCC---CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEE
Confidence                  00013456676 9998   663445555678999999964332  33333221           0   135889


Q ss_pred             EeecCCCeeEEec
Q 022870          259 SIDESCNGGISGG  271 (291)
Q Consensus       259 ~~~~~~~~l~s~s  271 (291)
                      +++|+|++|+.+.
T Consensus       387 ~lSpDGk~LyVaN  399 (462)
T 2ece_A          387 EISRDGRRVYVTN  399 (462)
T ss_dssp             EECTTSSEEEEEC
T ss_pred             EEcCCCCEEEEEc
Confidence            9999999998877

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.09  E-value=2.4e-08  Score=74.35  Aligned_cols=194  Identities=10%  Similarity=0.031  Sum_probs=122.3

Q ss_pred             ceEEecCCccc--eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870           10 PVAVLRGHRAS--VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus        10 ~~~~l~~h~~~--v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .+.++. |...  ...|.|+. +.+..+.+.+|.|+++|+++++.+..+ .... ..-..+++..  + ......-.++.
T Consensus        45 Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-~FgeGit~~g--~-~Ly~ltw~~~~  117 (268)
T 3nok_A           45 IIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGN-IFAEGLASDG--E-RLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-CCEEEEEECS--S-CEEEEESSSCE
T ss_pred             EEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-cceeEEEEeC--C-EEEEEEccCCE
Confidence            345553 5443  36788874 567778888899999999999988887 4332 1123355443  2 44445556889


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA  167 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (291)
                      +.+||..+.+.+.    ++....        ..                                 ..+++++..++++.
T Consensus       118 v~V~D~~Tl~~~~----ti~~~~--------eG---------------------------------wGLt~Dg~~L~vSd  152 (268)
T 3nok_A          118 LFTWSGMPPQRER----TTRYSG--------EG---------------------------------WGLCYWNGKLVRSD  152 (268)
T ss_dssp             EEEEETTTTEEEE----EEECSS--------CC---------------------------------CCEEEETTEEEEEC
T ss_pred             EEEEECCcCcEEE----EEeCCC--------ce---------------------------------eEEecCCCEEEEEC
Confidence            9999999886543    221100        00                                 23556777777654


Q ss_pred             cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA  247 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~  247 (291)
                      |  ++.|.++|..+.+.+.+++...      + ...-.....+. |. +   |+ ..+....+..|.+.|.++ ++.+..
T Consensus       153 G--s~~l~~iDp~T~~v~~~I~V~~------~-g~~v~~lNeLe-~~-d---G~-lyanvw~s~~I~vIDp~T-G~V~~~  216 (268)
T 3nok_A          153 G--GTMLTFHEPDGFALVGAVQVKL------R-GQPVELINELE-CA-N---GV-IYANIWHSSDVLEIDPAT-GTVVGV  216 (268)
T ss_dssp             S--SSEEEEECTTTCCEEEEEECEE------T-TEECCCEEEEE-EE-T---TE-EEEEETTCSEEEEECTTT-CBEEEE
T ss_pred             C--CCEEEEEcCCCCeEEEEEEeCC------C-CcccccccccE-Ee-C---CE-EEEEECCCCeEEEEeCCC-CcEEEE
Confidence            3  6899999999999888876310      0 00111223344 54 2   54 555555788999999998 777665


Q ss_pred             cccc-------------ccceeEEEeecCCCeeEEec
Q 022870          248 MKVH-------------LEPVLCLSIDESCNGGISGG  271 (291)
Q Consensus       248 ~~~h-------------~~~v~~~~~~~~~~~l~s~s  271 (291)
                      +...             .+..++|+|+|+++.|...+
T Consensus       217 Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          217 IDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            5421             13678999999766554444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.09  E-value=1.3e-07  Score=69.90  Aligned_cols=197  Identities=9%  Similarity=0.037  Sum_probs=122.3

Q ss_pred             CceEEecCCccc--eeEEEEcCCCCEEEEecCC--CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870            9 DPVAVLRGHRAS--VTDVCFHQTKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus         9 ~~~~~l~~h~~~--v~~l~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      +.+.++ .|...  ...|.|++ +.+..+.+.+  ..|+.+|+++++.+..+...... .-..+++..  + ......-.
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-fgeGi~~~~--~-~ly~ltw~   83 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-FGAGIVAWR--D-RLIQLTWR   83 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-CEEEEEEET--T-EEEEEESS
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-ceeEEEEeC--C-EEEEEEee
Confidence            345555 46544  55899987 5566666665  48999999999999888765431 113344433  2 44445566


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM  164 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      ++.+.+||..+.+...    +++....                                         +..+.+++..++
T Consensus        84 ~~~v~v~D~~tl~~~~----ti~~~~~-----------------------------------------Gwglt~dg~~L~  118 (243)
T 3mbr_X           84 NHEGFVYDLATLTPRA----RFRYPGE-----------------------------------------GWALTSDDSHLY  118 (243)
T ss_dssp             SSEEEEEETTTTEEEE----EEECSSC-----------------------------------------CCEEEECSSCEE
T ss_pred             CCEEEEEECCcCcEEE----EEeCCCC-----------------------------------------ceEEeeCCCEEE
Confidence            8999999999876543    2211100                                         022556777787


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                      ++-|  ++.|.++|..+.+.+.+++...      + ...-.....+. |.    +|+ ..+....+..|.+.|.++ ++.
T Consensus       119 vSdg--s~~l~~iDp~t~~~~~~I~V~~------~-g~~~~~lNeLe-~~----~G~-lyanvw~s~~I~vIDp~t-G~V  182 (243)
T 3mbr_X          119 MSDG--TAVIRKLDPDTLQQVGSIKVTA------G-GRPLDNLNELE-WV----NGE-LLANVWLTSRIARIDPAS-GKV  182 (243)
T ss_dssp             EECS--SSEEEEECTTTCCEEEEEECEE------T-TEECCCEEEEE-EE----TTE-EEEEETTTTEEEEECTTT-CBE
T ss_pred             EECC--CCeEEEEeCCCCeEEEEEEEcc------C-CcccccceeeE-Ee----CCE-EEEEECCCCeEEEEECCC-CCE
Confidence            6554  5889999999998888876310      0 00111223333 43    254 445555678999999998 777


Q ss_pred             eeeccc-------------cccceeEEEeecCCCeeEEecC
Q 022870          245 LTAMKV-------------HLEPVLCLSIDESCNGGISGGA  272 (291)
Q Consensus       245 ~~~~~~-------------h~~~v~~~~~~~~~~~l~s~s~  272 (291)
                      +..+..             -....++|+++|+++.|...+.
T Consensus       183 ~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          183 VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            665441             1235689999997666654443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.08  E-value=2e-08  Score=81.17  Aligned_cols=194  Identities=11%  Similarity=0.003  Sum_probs=125.3

Q ss_pred             CCCCEEEEecC-C----CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe----------CCCeEEEEE
Q 022870           28 QTKPILFAGTT-G----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWD   92 (291)
Q Consensus        28 ~~~~~l~s~~~-d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd   92 (291)
                      +++..++.... +    +.|.+.|..+++.+.++....  .+  .++++|  |+++++++.          .++.|.++|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~--~P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF--LP--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS--SC--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC--CC--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEE
Confidence            36665655443 2    799999999999999988654  44  899999  999888776          467899999


Q ss_pred             CCCCCCCCCCccccccc-eEEE-EEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC
Q 022870           93 IENGGLSSNPSLTIKTN-SYHF-CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ  170 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  170 (291)
                      ..+.+...    ++... .... ....+.                                 .++|+|+|++++++....
T Consensus       156 ~~t~~vv~----~I~v~g~~r~~~g~~P~---------------------------------~~~~spDGk~lyV~n~~~  198 (426)
T 3c75_H          156 PVTFLPIA----DIELPDAPRFLVGTYQW---------------------------------MNALTPDNKNLLFYQFSP  198 (426)
T ss_dssp             TTTCCEEE----EEEETTCCCCCBSCCGG---------------------------------GSEECTTSSEEEEEECSS
T ss_pred             CCCCcEEE----EEECCCccccccCCCcc---------------------------------eEEEcCCCCEEEEEecCC
Confidence            99876533    11100 0000 000000                                 077999999888643333


Q ss_pred             cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee----
Q 022870          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT----  246 (291)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~----  246 (291)
                      ++.|.+.|+.+++.+.++..             .+.   .. ..|++.  + .+++.+.||.+.+.+..+ ++...    
T Consensus       199 ~~~VsVID~~t~kvv~~I~v-------------~g~---~~-~~p~g~--~-~~v~~~~dG~~~~V~~~~-~~v~~~~~~  257 (426)
T 3c75_H          199 APAVGVVDLEGKTFDRMLDV-------------PDC---YH-IFPASP--T-VFYMNCRDGSLARVDFAD-GETKVTNTE  257 (426)
T ss_dssp             SCEEEEEETTTTEEEEEEEC-------------CSE---EE-EEEEET--T-EEEEEETTSSEEEEECCT-TCCEEEECC
T ss_pred             CCeEEEEECCCCeEEEEEEc-------------CCc---ee-eccCCC--c-EEEEEcCCCCEEEEECCC-CcEEEEeee
Confidence            68899999999998888873             111   11 444421  2 566677788888888854 44432    


Q ss_pred             eccccccce-eEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          247 AMKVHLEPV-LCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       247 ~~~~h~~~v-~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      .+.....++ ..+.+++++..++..+..+.+.+.|+.+..
T Consensus       258 ~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~  297 (426)
T 3c75_H          258 VFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG  297 (426)
T ss_dssp             CCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred             eeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence            122112222 235678887777766778899999986543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.08  E-value=8.1e-08  Score=77.03  Aligned_cols=226  Identities=10%  Similarity=0.072  Sum_probs=125.4

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccccc
Q 022870           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT  108 (291)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  108 (291)
                      ++..++.++.++.|..+|.++++.+.........  ......    .+..++.++.++.|..+|.++++...+  .....
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~--~~~p~~----~~~~v~v~~~~g~l~~~d~~tG~~~W~--~~~~~  173 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA--LSRPVV----SDGLVLIHTSNGQLQALNEADGAVKWT--VNLDM  173 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC--CSCCEE----ETTEEEEECTTSEEEEEETTTCCEEEE--EECCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce--EcCCEE----ECCEEEEEcCCCeEEEEECCCCcEEEE--EeCCC
Confidence            3457888888999999999999988776654321  111122    236788888999999999998876441  11110


Q ss_pred             ceEEEE-Eeeccc-CccceeccCCCCceeeecccCccccccCCCCC----------CcccCC--CCCcEEEEecCCcCeE
Q 022870          109 NSYHFC-KLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDS----------KDDVPA--EGPKYMAVAGEQLSEV  174 (291)
Q Consensus       109 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~g~~d~~i  174 (291)
                      ...... ...+.. ..........+....++....+..-.......          .+...|  .+..+++  ++.++.+
T Consensus       174 ~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~--~~~~g~l  251 (376)
T 3q7m_A          174 PSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFA--LAYNGNL  251 (376)
T ss_dssp             -----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEE--ECTTSCE
T ss_pred             CceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEE--EecCcEE
Confidence            000000 000000 01111111122233334333332211110000          000111  2334443  4457899


Q ss_pred             EEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc-ccc
Q 022870          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-HLE  253 (291)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-h~~  253 (291)
                      ..+|.++++.+.....             . ....+. ..     +. .++.++.++.|..+|..+ ++.+..... ...
T Consensus       252 ~~~d~~tG~~~w~~~~-------------~-~~~~~~-~~-----~~-~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~  309 (376)
T 3q7m_A          252 TALDLRSGQIMWKREL-------------G-SVNDFI-VD-----GN-RIYLVDQNDRVMALTIDG-GVTLWTQSDLLHR  309 (376)
T ss_dssp             EEEETTTCCEEEEECC-------------C-CEEEEE-EE-----TT-EEEEEETTCCEEEEETTT-CCEEEEECTTTTS
T ss_pred             EEEECCCCcEEeeccC-------------C-CCCCce-EE-----CC-EEEEEcCCCeEEEEECCC-CcEEEeecccCCC
Confidence            9999999988766552             0 111222 22     22 688888899999999998 776665542 222


Q ss_pred             ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      .+.......  ..|+.++.+|.|.++|.++++++.
T Consensus       310 ~~~~~~~~~--~~l~v~~~~g~l~~~d~~tG~~~~  342 (376)
T 3q7m_A          310 LLTSPVLYN--GNLVVGDSEGYLHWINVEDGRFVA  342 (376)
T ss_dssp             CCCCCEEET--TEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccCCEEEC--CEEEEEeCCCeEEEEECCCCcEEE
Confidence            333334433  368888889999999999998764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.04  E-value=6e-08  Score=75.57  Aligned_cols=199  Identities=11%  Similarity=0.016  Sum_probs=111.4

Q ss_pred             ceEEEEEeecCCCCeEEE-------EeCCCeEEEEECCCCCCCCCCcccc-----ccceEEEEEeecccCccceeccCCC
Q 022870           64 GIVSVATGPSIGLNKVIS-------QGRDGTVKCWDIENGGLSSNPSLTI-----KTNSYHFCKLSLVKEPYANAKQANE  131 (291)
Q Consensus        64 ~v~~~~~~~~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  131 (291)
                      ...+++|.+  ++.++++       ...++.|.+||..+++...   +..     .........+.... ..........
T Consensus        19 ~~~~~~~~~--~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~i~~~~~~-g~l~v~~~~~   92 (314)
T 1pjx_A           19 GAEGPVFDK--NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV---ICKPEVNGYGGIPAGCQCDRDA-NQLFVADMRL   92 (314)
T ss_dssp             TCEEEEECT--TSCEEEEETTCEETTEECCEEEEECTTTCCEEE---EECCEETTEECCEEEEEECSSS-SEEEEEETTT
T ss_pred             CccCceECC--CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE---EEecccCCCCCCCceEEEecCC-CcEEEEECCC
Confidence            368999998  8777777       5778999999987765421   111     01111112121110 1122222222


Q ss_pred             CceeeecccCccccc---cCCCC----CC-cccCCCCCcEEEEecCC--------------cCeEEEEeCCCcceeeEec
Q 022870          132 PKDCYEREVGETVDT---DSLCD----SK-DDVPAEGPKYMAVAGEQ--------------LSEVEIWDLNTAERCTRLH  189 (291)
Q Consensus       132 ~~~~~~~~~~~~~~~---~~~~~----~~-~~~~~~~~~~~~~~g~~--------------d~~i~~wd~~~~~~~~~~~  189 (291)
                      .+..++.. ......   .....    .. ++++++|.. ++++...              .+.|..||.. ++......
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNL-WITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCE-EEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence            34444444 222111   01111    11 888999864 4433321              1568888876 44333222


Q ss_pred             ccccCCCCCCCCCcceeeeeEEEec----CCCCCCceEEEeecCCCcEEEEEccCCCC-----ceeeccccc-cceeEEE
Q 022870          190 QNSCGGSPNFSSKGRGMCMAVQAYL----PSKSQGFVNVLAGYEDGSILVWDIRNPGI-----PLTAMKVHL-EPVLCLS  259 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----~~~~~~~h~-~~v~~~~  259 (291)
                               +    ......+. |+    |+   |+.++++...++.|.+||....+.     ....+..+. ..+..++
T Consensus       170 ---------~----~~~~~~i~-~~~~~d~d---g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~  232 (314)
T 1pjx_A          170 ---------A----FQFPNGIA-VRHMNDGR---PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             ---------E----ESSEEEEE-EEECTTSC---EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             ---------C----CCCcceEE-EecccCCC---CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence                     0    11234454 87    77   442455556789999999862133     223344444 5688999


Q ss_pred             eecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          260 IDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       260 ~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      ++++|+++++...++.|.+||.++++.+.
T Consensus       233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~  261 (314)
T 1pjx_A          233 FDEDNNLLVANWGSSHIEVFGPDGGQPKM  261 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBSCSE
T ss_pred             ECCCCCEEEEEcCCCEEEEEcCCCCcEeE
Confidence            99999988887788999999998666543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.04  E-value=2.3e-08  Score=76.19  Aligned_cols=197  Identities=11%  Similarity=-0.032  Sum_probs=108.7

Q ss_pred             ceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc
Q 022870           64 GIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE  142 (291)
Q Consensus        64 ~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (291)
                      ...++++.+  ++++++ +...++.|.+||..+.......  ...........+..  ...............++.....
T Consensus        25 ~p~~i~~~~--~g~l~v~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~--~g~l~v~~~~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDS--AGNVYVTSEGMYGRVVKLATGSTGTTVLP--FNGLYQPQGLAVDG--AGTVYVTDFNNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECT--TCCEEEEECSSSCEEEEECC-----EECC--CCSCCSCCCEEECT--TCCEEEEETTTEEEEECTTCSC
T ss_pred             CccceEECC--CCCEEEEccCCCCcEEEecCCCcccceEe--eCCcCCcceeEECC--CCCEEEEcCCCEEEEEeCCCce
Confidence            478999999  877666 4467889999997654321100  00001111111111  1111111112233333333322


Q ss_pred             cccccCCCCCC---cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCC
Q 022870          143 TVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ  219 (291)
Q Consensus       143 ~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  219 (291)
                      ...........   ++++++|. +++ +...++.|.+||..+........        ..    ...+..+. +.|+   
T Consensus        99 ~~~~~~~~~~~p~~i~~~~~g~-l~v-~~~~~~~i~~~~~~~~~~~~~~~--------~~----~~~p~~i~-~~~~---  160 (270)
T 1rwi_B           99 QTVLPFDGLNYPEGLAVDTQGA-VYV-ADRGNNRVVKLAAGSKTQTVLPF--------TG----LNDPDGVA-VDNS---  160 (270)
T ss_dssp             CEECCCCSCSSEEEEEECTTCC-EEE-EEGGGTEEEEECTTCCSCEECCC--------CS----CCSCCCEE-ECTT---
T ss_pred             EeeeecCCcCCCcceEECCCCC-EEE-EECCCCEEEEEECCCceeEeecc--------cc----CCCceeEE-EeCC---
Confidence            21111111112   88899886 444 33346889999876544322111        11    11344555 8886   


Q ss_pred             CceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      |+ ++++...++.|.+||... .........+...+.+|+++++|.++++...++.|.+|+.++...
T Consensus       161 g~-l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          161 GN-VYVTDTDNNRVVKLEAES-NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CC-EEEEEGGGTEEEEECTTT-CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             CC-EEEEECCCCEEEEEecCC-CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            54 667777788999999876 443333333336789999999998888887889999999876543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.02  E-value=8.6e-11  Score=94.05  Aligned_cols=187  Identities=13%  Similarity=0.081  Sum_probs=96.6

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC-CCCeEEEEeCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRD   85 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d   85 (291)
                      .++.+.+++.  +++.+..+..++..+++++.||.|+.||.++++.+..+..+.. ..+.   .+|.. ++..+++++.|
T Consensus        28 tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~-~~~~---~sp~~~~~~~v~~g~~d  101 (369)
T 2hz6_A           28 TGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP-ELVQ---ASPCRSSDGILYMGKKQ  101 (369)
T ss_dssp             TCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH-HHHT---TCSCC-----CCCCEEE
T ss_pred             CCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc-cccc---cCceEecCCEEEEEeCC
Confidence            3455666654  4566655666777888889999999999988887766554321 1111   11111 33677888899


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                      +.|+.||.++++...    ......   .                                       ..++|++..++ 
T Consensus       102 g~v~a~D~~tG~~~w----~~~~~~---~---------------------------------------~~~~p~~~~v~-  134 (369)
T 2hz6_A          102 DIWYVIDLLTGEKQQ----TLSSAF---A---------------------------------------DSLSPSTSLLY-  134 (369)
T ss_dssp             EEEEEECCC--------------------------------------------------------------------EE-
T ss_pred             CEEEEEECCCCcEEE----EecCCC---c---------------------------------------ccccccCCEEE-
Confidence            999999999987654    111111   0                                       11445555555 


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                       .++.|+.|+.||.++++.+..+...              ...... +.++...+. .+++++.||.|+.||.++ ++.+
T Consensus       135 -~~~~dg~v~a~d~~tG~~~W~~~~~--------------~~~~~~-~~~~~~~~~-~v~~~~~dg~v~a~d~~t-G~~~  196 (369)
T 2hz6_A          135 -LGRTEYTITMYDTKTRELRWNATYF--------------DYAASL-PEDDVDYKM-SHFVSNGDGLVVTVDSES-GDVL  196 (369)
T ss_dssp             -EEEEEEEEECCCSSSSSCCCEEEEE--------------EECCBC-CCCCTTCCC-CEEEEETSCEEEEECTTT-CCEE
T ss_pred             -EEecCCEEEEEECCCCCEEEeEecc--------------cccCcc-ccCCccccc-eEEEECCCCEEEEEECCC-CcEE
Confidence             3455899999999999877666520              011111 333210012 577788999999999998 7777


Q ss_pred             eeccccccceeE-EEeecCCC
Q 022870          246 TAMKVHLEPVLC-LSIDESCN  265 (291)
Q Consensus       246 ~~~~~h~~~v~~-~~~~~~~~  265 (291)
                      ..... ..++.. ..+++++.
T Consensus       197 W~~~~-~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          197 WIQNY-ASPVVAFYVWQREGL  216 (369)
T ss_dssp             EEEEC-SSCEEEEEECTTSSC
T ss_pred             EEecC-CCceEEEEEecCCce
Confidence            77664 344433 34456654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.99  E-value=2.6e-08  Score=85.96  Aligned_cols=58  Identities=19%  Similarity=0.233  Sum_probs=46.6

Q ss_pred             CcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      |.|..||+.+ ++.+..+.. ..++.+..+...+.+++.++.||.+++||.++++.+..+
T Consensus       457 g~l~A~D~~t-G~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          457 GRLLAWDPVA-QKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             EEEEEEETTT-TEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEeCCC-CcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence            7899999998 887777663 445556666667778888999999999999999998764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.99  E-value=3.8e-08  Score=81.71  Aligned_cols=223  Identities=13%  Similarity=0.058  Sum_probs=125.7

Q ss_pred             CCCEEEEec-CCCeEEEEeCCCCeEEEEEeeecCCcceEEEEE-e-ecCCCCeEEEEe------------------CCCe
Q 022870           29 TKPILFAGT-TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT-G-PSIGLNKVISQG------------------RDGT   87 (291)
Q Consensus        29 ~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~l~s~~------------------~dg~   87 (291)
                      ||++++... .++.|.+.|+.+.++...+..... .....+++ . |  ++.++++++                  .++.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p--~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWP--RSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSS--BCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecC--CCcEEEEecccccccCCCCcccccccccCce
Confidence            788776654 466799999999998886654332 34788888 4 7  889988885                  2457


Q ss_pred             EEEEECCCCCCCCCCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEE
Q 022870           88 VKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYM  164 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  164 (291)
                      +.+.|.++.+...    ++.. ........+...................+...........-....  .++.++|+...
T Consensus       177 vtvID~~t~~v~~----qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          177 FTAVDADKWEVAW----QVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEETTTTEEEE----EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             EEEEECCCCeEEE----EEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            8888888765433    1111 011111122221111111111111100000000000000000000  12345555544


Q ss_pred             EEecCCcCeEEEEeCCC--cce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          165 AVAGEQLSEVEIWDLNT--AER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                      +      +.|.+.|.++  ++. +..++.             .....++. ++||   |++.++++-.+..|.++|+.+ 
T Consensus       253 i------~~V~VID~~~~~~~~~~~~Ipv-------------g~~PhGv~-~sPD---Gk~v~V~~~~s~~VsVid~~~-  308 (595)
T 1fwx_A          253 L------NGVKVVDGRKEASSLFTRYIPI-------------ANNPHGCN-MAPD---KKHLCVAGKLSPTVTVLDVTR-  308 (595)
T ss_dssp             E------TTEEEEECSGGGCCSSEEEEEE-------------ESSCCCEE-ECTT---SSEEEEECTTSSBEEEEEGGG-
T ss_pred             E------CcEEEEeCcccCCceeEEEEec-------------CCCceEEE-EcCC---CCEEEEeCCCCCeEEEEECcc-
Confidence            2      3489999987  444 444542             11234454 9998   665777777899999999986 


Q ss_pred             CC------------ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          242 GI------------PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       242 ~~------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      .+            .+..+.. ......++|+++|...++.-.|++|.+||++.
T Consensus       309 ~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          309 FDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             HHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            31            2333332 24578899999996556777899999999987

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.97  E-value=6.9e-08  Score=77.49  Aligned_cols=198  Identities=15%  Similarity=0.101  Sum_probs=118.3

Q ss_pred             CCCCEE-EEecCCCeEEEEeCCCC----eEEEEEe---ee--cCCcceEEEEEeecCCCCeEEEEeCC------CeEEEE
Q 022870           28 QTKPIL-FAGTTGGELRIWDTVQH----RTVSSSW---VH--SAAHGIVSVATGPSIGLNKVISQGRD------GTVKCW   91 (291)
Q Consensus        28 ~~~~~l-~s~~~dg~v~iwd~~~~----~~~~~~~---~~--~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iw   91 (291)
                      +++++| ++|..+++|.++|+.+.    +..++++   ..  .+...-..+...|  +| .++++..+      |.|.++
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p--dG-i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP--DA-IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS--SC-EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC--Ce-EEEEcCCCcCCCCCCeEEEE
Confidence            777766 56777899999998754    6666663   10  0111246677889  87 77766655      789999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec---
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG---  168 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---  168 (291)
                      |.++.+.+.    ++.....      ...             .-++                +.|+|+++.++ ++.   
T Consensus       170 D~~T~~v~~----~~~~~~~------~~~-------------~~Yd----------------~~~~p~~~~mv-sS~wg~  209 (462)
T 2ece_A          170 DHYSFEPLG----KWEIDRG------DQY-------------LAYD----------------FWWNLPNEVLV-SSEWAV  209 (462)
T ss_dssp             CTTTCCEEE----ECCSBCT------TCC-------------CCCC----------------EEEETTTTEEE-ECBCCC
T ss_pred             ECCCCeEEE----EEccCCC------Ccc-------------ccce----------------EEECCCCCEEE-EccCcC
Confidence            999887543    1111000      000             0000                33688887544 331   


Q ss_pred             ---------------CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEE-EecCCCCCCceEEEeec----
Q 022870          169 ---------------EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ-AYLPSKSQGFVNVLAGY----  228 (291)
Q Consensus       169 ---------------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~g~~~l~~g~----  228 (291)
                                     ..+.+|.+||+.+++.+.++..       +.   .......+. +|+|+   ++ ++++++    
T Consensus       210 p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v-------g~---~g~~P~~i~f~~~Pd---g~-~aYV~~e~~~  275 (462)
T 2ece_A          210 PNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL-------GE---ENRMALELRPLHDPT---KL-MGFINMVVSL  275 (462)
T ss_dssp             HHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES-------CT---TEEEEEEEEECSSTT---CC-EEEEEEEEET
T ss_pred             ccccccccchhhhhhccCCEEEEEECCCCcEeeEEec-------CC---CCCccceeEeeECCC---CC-EEEEEEeeec
Confidence                           2358899999999888877763       11   112333333 15887   54 444444    


Q ss_pred             --CCCcEEEEEccCCCCc--ee-----------ec-------cccccceeEEEeecCCCeeEEec-CCCeEEEEEcCC
Q 022870          229 --EDGSILVWDIRNPGIP--LT-----------AM-------KVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDH  283 (291)
Q Consensus       229 --~dg~i~vwd~~~~~~~--~~-----------~~-------~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~~~  283 (291)
                        .++.|.+|.... +..  .+           .+       .+-...+..|.+++|+++|..+. ..+.|.++|+..
T Consensus       276 ~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          276 KDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             TTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             cCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence              667888766553 211  00           00       00023578899999999886555 468999999863

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.97  E-value=7.7e-08  Score=83.51  Aligned_cols=200  Identities=7%  Similarity=-0.019  Sum_probs=120.1

Q ss_pred             eEEEEcCCCCEEEEecCCC-------------eEEEEeCCCCeE--EEEEeeec-CCcceEEEEEeecCCCCeEEEEe--
Q 022870           22 TDVCFHQTKPILFAGTTGG-------------ELRIWDTVQHRT--VSSSWVHS-AAHGIVSVATGPSIGLNKVISQG--   83 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg-------------~v~iwd~~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~--   83 (291)
                      ..++|+ |++.|+.++.+.             .|++|++.++..  ...+.... ....+.++.|+|  ||++|+...  
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~  254 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAAN  254 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEES
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEcc
Confidence            578999 999888887774             499999987642  22233222 113378899999  998876433  


Q ss_pred             --CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870           84 --RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (291)
Q Consensus        84 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (291)
                        .+..|.++|+.++..... .+........                                         -.++++|.
T Consensus       255 ~~~~~~i~~~d~~~~~~~~~-~l~~~~~~~~-----------------------------------------~~~~~~g~  292 (693)
T 3iuj_A          255 STSGNRLYVKDLSQENAPLL-TVQGDLDADV-----------------------------------------SLVDNKGS  292 (693)
T ss_dssp             SSSCCEEEEEETTSTTCCCE-EEECSSSSCE-----------------------------------------EEEEEETT
T ss_pred             CCCCcEEEEEECCCCCCceE-EEeCCCCceE-----------------------------------------EEEeccCC
Confidence              235899999987632110 0011110000                                         01456667


Q ss_pred             cEEEEecCC--cCeEEEEeCCCcce--eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC--cEEE
Q 022870          162 KYMAVAGEQ--LSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILV  235 (291)
Q Consensus       162 ~~~~~~g~~--d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~v  235 (291)
                      .+++.+...  .+.|..+|+.++..  ...+.        .+...    ..  . |+|+   +..++++...++  .|++
T Consensus       293 ~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~~~----~~--~-~s~~---g~~lv~~~~~~g~~~l~~  354 (693)
T 3iuj_A          293 TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--------PERQQ----VL--T-VHSG---SGYLFAEYMVDATARVEQ  354 (693)
T ss_dssp             EEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--------CCCSS----CE--E-EEEE---TTEEEEEEEETTEEEEEE
T ss_pred             EEEEEECCCCCCCEEEEEeCCCCCccccEEEe--------cCCCC----EE--E-EEEE---CCEEEEEEEECCeeEEEE
Confidence            776655432  36899999987654  23444        23221    12  3 7776   442444445555  6888


Q ss_pred             EEccCCCCceeecc-ccccceeEEEeecCCCeeEEecCC----CeEEEEEcCCCce
Q 022870          236 WDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGISGGAD----QKIVLYNLDHSTV  286 (291)
Q Consensus       236 wd~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d----g~i~vw~~~~~~~  286 (291)
                      ||+..  .....+. ...+.+..+.+++++..|+....+    +.+..||+.+++.
T Consensus       355 ~d~~g--~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          355 FDYEG--KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             ECTTS--CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EECCC--CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            98874  3344443 234567788888888777655444    7899999987753

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.95  E-value=3.5e-06  Score=64.04  Aligned_cols=207  Identities=5%  Similarity=-0.051  Sum_probs=123.2

Q ss_pred             cceeEEEEcCCCC-EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCC
Q 022870           19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENG   96 (291)
Q Consensus        19 ~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~   96 (291)
                      ..+..++|++++. ++++-..++.|..++...+.....+....  .....+++.+  ++..|+ +-...+.|.++++...
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~--~~p~~ia~d~--~~~~lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL--GSPEGIALDH--LGRTIFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC--CCEEEEEEET--TTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC--CCccEEEEEe--cCCeEEEEECCCCEEEEEEcCCC
Confidence            4567899999654 44555667899999987654333232211  2378999998  655555 4455678999998653


Q ss_pred             CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC-cCeEE
Q 022870           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ-LSEVE  175 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d~~i~  175 (291)
                      ....  ........           +.                             .++++|++.+++++.... .+.|.
T Consensus       112 ~~~~--~~~~~~~~-----------P~-----------------------------~i~vd~~~g~lyv~~~~~~~~~I~  149 (267)
T 1npe_A          112 QRRV--LFDTGLVN-----------PR-----------------------------GIVTDPVRGNLYWTDWNRDNPKIE  149 (267)
T ss_dssp             SCEE--EECSSCSS-----------EE-----------------------------EEEEETTTTEEEEEECCSSSCEEE
T ss_pred             CEEE--EEECCCCC-----------cc-----------------------------EEEEeeCCCEEEEEECCCCCcEEE
Confidence            2100  00000000           00                             056888766666543221 46888


Q ss_pred             EEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccce
Q 022870          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV  255 (291)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v  255 (291)
                      .+++.... ...+..       .    .......++ ++|+   +..++++-...+.|.++|... ......+.. ....
T Consensus       150 ~~~~dg~~-~~~~~~-------~----~~~~P~gia-~d~~---~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~-~~~P  211 (267)
T 1npe_A          150 TSHMDGTN-RRILAQ-------D----NLGLPNGLT-FDAF---SSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG-LQYP  211 (267)
T ss_dssp             EEETTSCC-CEEEEC-------T----TCSCEEEEE-EETT---TTEEEEEETTTTEEEEEETTE-EEEEEEEEC-CCSE
T ss_pred             EEecCCCC-cEEEEE-------C----CCCCCcEEE-EcCC---CCEEEEEECCCCEEEEEecCC-CceEEEecC-CCCc
Confidence            88876432 222221       0    112355665 8886   332556666778999999874 332222222 2345


Q ss_pred             eEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          256 LCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      .+++.+ .+.++++....+.|.++|.++++.+..+
T Consensus       212 ~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          212 FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (267)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence            678776 4555566666789999999999887765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.94  E-value=4.2e-07  Score=67.72  Aligned_cols=169  Identities=11%  Similarity=0.012  Sum_probs=112.4

Q ss_pred             eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCC
Q 022870           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN  130 (291)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (291)
                      +.+.++ .|........+.|+.   +.++.+.+.+|.|+.+|+++++...+.   +.......                 
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~---~~Ly~stG~~g~v~~iD~~Tgkv~~~~---l~~~~Fge-----------------   99 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQ---GHFFESTGHQGTLRQLSLESAQPVWME---RLGNIFAE-----------------   99 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET---TEEEEEETTTTEEEECCSSCSSCSEEE---ECTTCCEE-----------------
T ss_pred             EEEEEE-cCCCccccceEEEEC---CEEEEEcCCCCEEEEEECCCCcEEeEE---CCCCccee-----------------
Confidence            344444 344444467888875   367778888999999999999875521   21111000                 


Q ss_pred             CCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeE
Q 022870          131 EPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV  210 (291)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (291)
                                              ...++++.++++ .-.++.+.+||..+.+.+.+++..           ..+  +.+
T Consensus       100 ------------------------Git~~g~~Ly~l-tw~~~~v~V~D~~Tl~~~~ti~~~-----------~eG--wGL  141 (268)
T 3nok_A          100 ------------------------GLASDGERLYQL-TWTEGLLFTWSGMPPQRERTTRYS-----------GEG--WGL  141 (268)
T ss_dssp             ------------------------EEEECSSCEEEE-ESSSCEEEEEETTTTEEEEEEECS-----------SCC--CCE
T ss_pred             ------------------------EEEEeCCEEEEE-EccCCEEEEEECCcCcEEEEEeCC-----------Cce--eEE
Confidence                                    022345566664 445899999999999999998731           122  232


Q ss_pred             EEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc--c---cceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH--L---EPVLCLSIDESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       211 ~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h--~---~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                         .++   ++ .|+.+..++.|.++|..+ .+.+..+...  .   ..++.+.|. +|...+..-.++.|.+-|.++++
T Consensus       142 ---t~D---g~-~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~  212 (268)
T 3nok_A          142 ---CYW---NG-KLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT  212 (268)
T ss_dssp             ---EEE---TT-EEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred             ---ecC---CC-EEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence               333   44 565556689999999998 7777766532  2   245778887 66666666568899999999999


Q ss_pred             eeeee
Q 022870          286 VSHCV  290 (291)
Q Consensus       286 ~~~~~  290 (291)
                      ++..+
T Consensus       213 V~~~I  217 (268)
T 3nok_A          213 VVGVI  217 (268)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.94  E-value=1.5e-07  Score=74.60  Aligned_cols=228  Identities=10%  Similarity=-0.036  Sum_probs=123.0

Q ss_pred             CCccceeEEEEcCCCCEEEEecC-----CCeEEEEeCCCCeEEEEEeeecC----CcceEEEEEeecCCCCeE-EEEe--
Q 022870           16 GHRASVTDVCFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPSIGLNKV-ISQG--   83 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l-~s~~--   83 (291)
                      +|-..+..++++++++++++-..     ++.|.+||+.+++.+..+.....    ...+..+++.+  ++..+ ++-.  
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~--~~g~~yvtd~~~  141 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDL--IHNFVYISDPAP  141 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEET--TTTEEEEEECCS
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEec--CCCEEEEEcCcc
Confidence            46678999999999876665433     57899999999987777754321    12368999997  54454 4544  


Q ss_pred             -CCCeEEEEECCCCCCCCCCccccc-cceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870           84 -RDGTVKCWDIENGGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (291)
Q Consensus        84 -~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (291)
                       .++.|.+||+.+++...  ....+ ........+.+....... ....+....+           ..+-..++|+|+++
T Consensus       142 ~~~~~i~v~d~~~g~~~r--~~~~~~~~~~~~~~~~~~g~~~~~-~~~~g~~~~~-----------~~~~~gia~s~dg~  207 (343)
T 2qe8_A          142 DDKAALIRVDLQTGLAAR--VLQGYPGIAPEDIDLVIDGVPVQI-GQPDGTVIRP-----------HLGVNGIVLDAENE  207 (343)
T ss_dssp             GGGCEEEEEETTTCCEEE--ECTTCTTTSCCSCCCEETTEECBE-ECTTSCEECC-----------CCCEEEEEECTTSC
T ss_pred             CCCCeEEEEECCCCCEEE--EecCCCcccccccceeECCEEEEe-ccCCCceece-----------ecccceeEeccCCC
Confidence             67899999998765322  11000 000000000000000000 0000000000           00011188999998


Q ss_pred             cEEEEecCCcCeEEEEeCCC---cc-----eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870          162 KYMAVAGEQLSEVEIWDLNT---AE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                      .++++. .....+..++...   +.     ....+...      ++    .+....++ +.++   |. ++++...++.|
T Consensus       208 ~ly~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------g~----~g~pdgia-~d~~---G~-l~va~~~~~~V  271 (343)
T 2qe8_A          208 WLYLSP-MHSTSMYRIKSADLSNLQLTDAELGSKIERY------SE----KPICDGIS-IDKD---HN-IYVGDLAHSAI  271 (343)
T ss_dssp             EEEEEE-SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE------EE----CCSCSCEE-ECTT---CC-EEEEEGGGTEE
T ss_pred             EEEEEe-CCCCeEEEEEHHHhcCCCCChhhhhcceEec------cc----CCCCceEE-ECCC---CC-EEEEccCCCeE
Confidence            776543 3234565555321   10     00000000      11    11233454 8887   54 77888889999


Q ss_pred             EEEEccCCCCceeeccc-cccceeEEEeecCCCeeEEecCCCeE
Q 022870          234 LVWDIRNPGIPLTAMKV-HLEPVLCLSIDESCNGGISGGADQKI  276 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i  276 (291)
                      .+||..+ ++....... +...+.+++|++++.++++.+..+.+
T Consensus       272 ~~~d~~~-G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          272 GVITSAD-RAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             EEEETTT-TEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             EEEECCC-CCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence            9999844 443222221 24568999999999888887754443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.92  E-value=1.6e-07  Score=81.24  Aligned_cols=58  Identities=16%  Similarity=0.179  Sum_probs=45.9

Q ss_pred             CCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      +|.|+.||+.+ ++.+.++..+. ++..-.+...+.+++.++.||.|+.||.++++++-.
T Consensus       454 ~g~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~  511 (689)
T 1yiq_A          454 SGKLIAWDPVK-QQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWE  511 (689)
T ss_dssp             EEEEEEEETTT-TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ceeEEEEECCC-CCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence            47899999999 88888776543 334445566677889999999999999999998854

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.89  E-value=6.2e-07  Score=67.53  Aligned_cols=172  Identities=9%  Similarity=-0.024  Sum_probs=109.7

Q ss_pred             eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC--CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceecc
Q 022870           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR--DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ  128 (291)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (291)
                      +.+.++. |........+.|++  ++.++++.+.  ++.|.+.|+.+++...  ...+......                
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~--dg~Lyvstg~~~~s~v~~iD~~tg~v~~--~i~l~~~~fg----------------   68 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAE--NDTLFESTGLYGRSSVRQVALQTGKVEN--IHKMDDSYFG----------------   68 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECS--TTEEEEEECSTTTCEEEEEETTTCCEEE--EEECCTTCCE----------------
T ss_pred             eEEEEEE-CCCCCCcccEEEeC--CCeEEEECCCCCCCEEEEEECCCCCEEE--EEecCCCcce----------------
Confidence            3455553 33222368999999  8544444443  5799999999987644  1111111110                


Q ss_pred             CCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeee
Q 022870          129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM  208 (291)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (291)
                                               ..+.+++..+++ +...++.+.++|..+.+.+.++..       + .  ..+  +
T Consensus        69 -------------------------eGi~~~g~~lyv-~t~~~~~v~viD~~t~~v~~~i~~-------g-~--~~g--~  110 (266)
T 2iwa_A           69 -------------------------EGLTLLNEKLYQ-VVWLKNIGFIYDRRTLSNIKNFTH-------Q-M--KDG--W  110 (266)
T ss_dssp             -------------------------EEEEEETTEEEE-EETTCSEEEEEETTTTEEEEEEEC-------C-S--SSC--C
T ss_pred             -------------------------EEEEEeCCEEEE-EEecCCEEEEEECCCCcEEEEEEC-------C-C--CCe--E
Confidence                                     002233456665 455689999999999999888873       2 0  122  2


Q ss_pred             eEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc-----cceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-----EPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       209 ~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      .   ++++   |+ .++++..++.|.++|..+ .+.+..+.-..     ..++.+.|. ++...+..-.++.|.+-|..+
T Consensus       111 g---lt~D---g~-~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t  181 (266)
T 2iwa_A          111 G---LATD---GK-ILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKD  181 (266)
T ss_dssp             E---EEEC---SS-SEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred             E---EEEC---CC-EEEEECCCCeEEEEECCC-CcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCC
Confidence            2   4445   33 444555688999999998 67666665321     246788888 676666666788999999999


Q ss_pred             Cceeeee
Q 022870          284 STVSHCV  290 (291)
Q Consensus       284 ~~~~~~~  290 (291)
                      ++.+..+
T Consensus       182 g~V~~~I  188 (266)
T 2iwa_A          182 GTLLGWI  188 (266)
T ss_dssp             CCEEEEE
T ss_pred             CcEEEEE
Confidence            9988764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.88  E-value=9.6e-07  Score=65.22  Aligned_cols=170  Identities=16%  Similarity=0.106  Sum_probs=110.3

Q ss_pred             eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC--eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceecc
Q 022870           51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ  128 (291)
Q Consensus        51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (291)
                      +.+.++ .|........+.|++  + .++.+.+.+|  .|+.+|+.+++...  ...+.......               
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~--~-~LyestG~~g~S~v~~vD~~tgkv~~--~~~l~~~~fge---------------   68 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR--G-HLYESTGETGRSSVRKVDLETGRILQ--RAEVPPPYFGA---------------   68 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET--T-EEEEEECCTTSCEEEEEETTTCCEEE--EEECCTTCCEE---------------
T ss_pred             EEEEEc-CCCCccccccEEEEC--C-EEEEECCCCCCceEEEEECCCCCEEE--EEeCCCCccee---------------
Confidence            345555 466556688999986  3 5666666654  89999999997644  11111111100               


Q ss_pred             CCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeee
Q 022870          129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM  208 (291)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (291)
                                                ...+.+..++..+ -.++.+.+||..+.+.+.+++..           ..+  +
T Consensus        69 --------------------------Gi~~~~~~ly~lt-w~~~~v~v~D~~tl~~~~ti~~~-----------~~G--w  108 (243)
T 3mbr_X           69 --------------------------GIVAWRDRLIQLT-WRNHEGFVYDLATLTPRARFRYP-----------GEG--W  108 (243)
T ss_dssp             --------------------------EEEEETTEEEEEE-SSSSEEEEEETTTTEEEEEEECS-----------SCC--C
T ss_pred             --------------------------EEEEeCCEEEEEE-eeCCEEEEEECCcCcEEEEEeCC-----------CCc--e
Confidence                                      0222345666644 45799999999999999998831           122  3


Q ss_pred             eEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc-----cceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-----EPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       209 ~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      .+   .++   +. .|+.+..++.|.++|..+ .+.+..+.-..     ..++.+.|. +|...+..-.+..|.+.|.++
T Consensus       109 gl---t~d---g~-~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t  179 (243)
T 3mbr_X          109 AL---TSD---DS-HLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPAS  179 (243)
T ss_dssp             EE---EEC---SS-CEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT
T ss_pred             EE---eeC---CC-EEEEECCCCeEEEEeCCC-CeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCC
Confidence            33   333   33 455555688999999998 77776665322     345677776 556556665678999999999


Q ss_pred             Cceeeee
Q 022870          284 STVSHCV  290 (291)
Q Consensus       284 ~~~~~~~  290 (291)
                      ++++..+
T Consensus       180 G~V~~~i  186 (243)
T 3mbr_X          180 GKVVAWI  186 (243)
T ss_dssp             CBEEEEE
T ss_pred             CCEEEEE
Confidence            9988654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.87  E-value=1.8e-07  Score=77.77  Aligned_cols=222  Identities=9%  Similarity=0.095  Sum_probs=137.9

Q ss_pred             cceeEEEE-c-CCCCEEEEec------------------CCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCe
Q 022870           19 ASVTDVCF-H-QTKPILFAGT------------------TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK   78 (291)
Q Consensus        19 ~~v~~l~~-~-~~~~~l~s~~------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   78 (291)
                      .....+++ + |++.+++.++                  .++.+.+.|.++.+...++.....   -..++++|  +|++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~sp--dGk~  208 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADY--EGKW  208 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECS--SSSE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECC--CCCE
Confidence            45778887 5 8999998884                  356899999999999888876432   46777999  9999


Q ss_pred             EEEEeCCC---------------eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeeccc--C
Q 022870           79 VISQGRDG---------------TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV--G  141 (291)
Q Consensus        79 l~s~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  141 (291)
                      +++.+.+.               .|.+.|......      ........             ..   +...+++...  .
T Consensus       209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~------~v~~Gk~~-------------~i---~~V~VID~~~~~~  266 (595)
T 1fwx_A          209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK------AIAAGDYQ-------------EL---NGVKVVDGRKEAS  266 (595)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH------HHHHTCSE-------------EE---TTEEEEECSGGGC
T ss_pred             EEEEecCcccCcchhhccccccceEEEeeccceeE------eccCCCee-------------EE---CcEEEEeCcccCC
Confidence            99888663               355555432210      00000000             00   2244455544  2


Q ss_pred             ccccccC-CCCCC--cccCCCCCcEEEEecCCcCeEEEEeCCCcc------------eeeEecccccCCCCCCCCCccee
Q 022870          142 ETVDTDS-LCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE------------RCTRLHQNSCGGSPNFSSKGRGM  206 (291)
Q Consensus       142 ~~~~~~~-~~~~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  206 (291)
                      ....... .+...  +.++|||+++++ ++..+..|.++|+.+.+            .....+             ....
T Consensus       267 ~~~~~~Ipvg~~PhGv~~sPDGk~v~V-~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-------------vG~g  332 (595)
T 1fwx_A          267 SLFTRYIPIANNPHGCNMAPDKKHLCV-AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-------------LGLG  332 (595)
T ss_dssp             CSSEEEEEEESSCCCEEECTTSSEEEE-ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-------------CCSC
T ss_pred             ceeEEEEecCCCceEEEEcCCCCEEEE-eCCCCCeEEEEECcccccccccccCcccceEEEcC-------------CCCC
Confidence            2211111 11111  899999988776 56668999999999653            122222             1223


Q ss_pred             eeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC---------CCceeeccccccce-----eEEEeecCCCeeEEecC
Q 022870          207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---------GIPLTAMKVHLEPV-----LCLSIDESCNGGISGGA  272 (291)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~---------~~~~~~~~~h~~~v-----~~~~~~~~~~~l~s~s~  272 (291)
                      ..-++ |+|+   |. ..++...|+.|.+||+...         .+.+..+..|-.+-     .++..++||++|++...
T Consensus       333 P~h~a-F~~d---G~-aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          333 PLHTA-FDGR---GN-AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEEEE-ECTT---SE-EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             cceEE-ECCC---Ce-EEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            44554 9998   53 7778888999999998751         34555565554432     23355899999988753


Q ss_pred             ---CCe----------EEEEEcCCCce
Q 022870          273 ---DQK----------IVLYNLDHSTV  286 (291)
Q Consensus       273 ---dg~----------i~vw~~~~~~~  286 (291)
                         |..          -.++|+..+++
T Consensus       408 ~skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          408 FSKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             CCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             CCccccccCCCCCCCcceEEEcCCCcE
Confidence               432          18899976653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.86  E-value=4.5e-06  Score=66.83  Aligned_cols=235  Identities=11%  Similarity=0.059  Sum_probs=126.3

Q ss_pred             CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC-------CcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCC
Q 022870           29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-------AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (291)
Q Consensus        29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  101 (291)
                      .+..++.++.++.|..+|.++++.+........       ...+.+.-..   ++..++.++.++.|..+|.++++...+
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~tG~~~W~  128 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSDGTVAWQ  128 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence            455788888899999999999998877665321       1123222222   347888899999999999998876431


Q ss_pred             CccccccceEEEEEeecccCccceeccCCCCceeeecccCcccccc-CCC-------CCCcccCCCCCcEEEEecCCcCe
Q 022870          102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SLC-------DSKDDVPAEGPKYMAVAGEQLSE  173 (291)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~g~~d~~  173 (291)
                        ............  .. ..........+....++....+..-.. ...       .......  +..++  .+..++.
T Consensus       129 --~~~~~~~~~~p~--~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~--~g~~~g~  199 (376)
T 3q7m_A          129 --TKVAGEALSRPV--VS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAV--VGGDNGR  199 (376)
T ss_dssp             --EECSSCCCSCCE--EE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEE--ECCTTTE
T ss_pred             --EeCCCceEcCCE--EE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEE--EEcCCCE
Confidence              111110000000  00 001111111222333333333221111 100       0111122  23444  3556899


Q ss_pred             EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc
Q 022870          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE  253 (291)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~  253 (291)
                      +..+|.++++.+.........   +. .+.. ....+. -.|.-.++  .++.++.++.+..+|.++ ++.+.....  .
T Consensus       200 l~~~d~~tG~~~w~~~~~~~~---~~-~~~~-~~~~~~-~~p~~~~~--~v~~~~~~g~l~~~d~~t-G~~~w~~~~--~  268 (376)
T 3q7m_A          200 VSAVLMEQGQMIWQQRISQAT---GS-TEID-RLSDVD-TTPVVVNG--VVFALAYNGNLTALDLRS-GQIMWKREL--G  268 (376)
T ss_dssp             EEEEETTTCCEEEEEECCC----------------CCC-CCCEEETT--EEEEECTTSCEEEEETTT-CCEEEEECC--C
T ss_pred             EEEEECCCCcEEEEEecccCC---CC-cccc-cccccC-CCcEEECC--EEEEEecCcEEEEEECCC-CcEEeeccC--C
Confidence            999999999887766521000   00 0000 000000 11110112  678888899999999998 776655542  2


Q ss_pred             ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      ....+..+  +..|+.++.++.|..+|.++++.+-
T Consensus       269 ~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w  301 (376)
T 3q7m_A          269 SVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLW  301 (376)
T ss_dssp             CEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEE
T ss_pred             CCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEE
Confidence            34455554  3367777789999999999988753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.85  E-value=8.3e-07  Score=66.14  Aligned_cols=169  Identities=13%  Similarity=0.097  Sum_probs=109.8

Q ss_pred             EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC--eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccC
Q 022870           52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA  129 (291)
Q Consensus        52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (291)
                      .+.++ .|........+.|+.   +.++.+.+.+|  .|+.+|+++++...+  ..+......                 
T Consensus        33 vv~~~-phd~~~ftqGL~~~~---~~LyestG~~g~S~v~~vD~~Tgkv~~~--~~l~~~~Fg-----------------   89 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYRN---GYFYESTGLNGRSSIRKVDIESGKTLQQ--IELGKRYFG-----------------   89 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEET---TEEEEEEEETTEEEEEEECTTTCCEEEE--EECCTTCCE-----------------
T ss_pred             EEEEe-cCCCCcccceEEEEC---CEEEEECCCCCCceEEEEECCCCcEEEE--EecCCccce-----------------
Confidence            44555 355444567888874   36666777766  899999999876441  111111000                 


Q ss_pred             CCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeee
Q 022870          130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA  209 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (291)
                                              ..+.++++.+++++ -.++.+.+||..+.+.+.+++..           ..+  +.
T Consensus        90 ------------------------eGit~~g~~ly~lt-w~~~~v~v~D~~t~~~~~ti~~~-----------~eG--~g  131 (262)
T 3nol_A           90 ------------------------EGISDWKDKIVGLT-WKNGLGFVWNIRNLRQVRSFNYD-----------GEG--WG  131 (262)
T ss_dssp             ------------------------EEEEEETTEEEEEE-SSSSEEEEEETTTCCEEEEEECS-----------SCC--CC
T ss_pred             ------------------------eEEEEeCCEEEEEE-eeCCEEEEEECccCcEEEEEECC-----------CCc--eE
Confidence                                    01223456666644 45799999999999999998731           122  22


Q ss_pred             EEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc--c---cceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          210 VQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH--L---EPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       210 ~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h--~---~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                         +.++   ++ .|+....++.|.++|..+ .+.+..+...  .   ..++.+.|. +|...+..-.++.|.+.|.+++
T Consensus       132 ---lt~d---g~-~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG  202 (262)
T 3nol_A          132 ---LTHN---DQ-YLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETG  202 (262)
T ss_dssp             ---EEEC---SS-CEEECCSSSEEEEECTTT-CSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC
T ss_pred             ---EecC---CC-EEEEECCCCeEEEEcCCC-CeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCC
Confidence               3334   33 455555578999999998 7777665532  2   335567886 6666666667889999999999


Q ss_pred             ceeeee
Q 022870          285 TVSHCV  290 (291)
Q Consensus       285 ~~~~~~  290 (291)
                      +++..+
T Consensus       203 ~V~~~I  208 (262)
T 3nol_A          203 KVTGII  208 (262)
T ss_dssp             BEEEEE
T ss_pred             cEEEEE
Confidence            988764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.81  E-value=8.4e-07  Score=76.64  Aligned_cols=229  Identities=10%  Similarity=0.041  Sum_probs=130.1

Q ss_pred             eEEEEcCCCCEEEEecCCC-------------------eEEEEeCCCCeEEEEEeeecCC-------cceEEEEEeecCC
Q 022870           22 TDVCFHQTKPILFAGTTGG-------------------ELRIWDTVQHRTVSSSWVHSAA-------HGIVSVATGPSIG   75 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg-------------------~v~iwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~   75 (291)
                      ..++++|++.+++.+..++                   .|..+|..+|+.+..++...+.       ....-+....  +
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~--d  323 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI--A  323 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE--T
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc--C
Confidence            4578889888888887764                   5999999999998887653210       1122334444  6


Q ss_pred             C---CeEEEEeCCCeEEEEECCCCCCCCCCccccccceEE-EEEeecccCccceeccCCCCceeeecccCc-cccccCCC
Q 022870           76 L---NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLC  150 (291)
Q Consensus        76 ~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  150 (291)
                      |   ..++.++.+|.|+++|.++++.+.    ..+..... ...+.....+....     .   ....... ...-...+
T Consensus       324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~----~~~~~~~~~~~~~d~~g~~~~~~-----~---~~~~~~~~~~~P~~~G  391 (677)
T 1kb0_A          324 GKPRKVILHAPKNGFFFVLDRTNGKFIS----AKNFVPVNWASGYDKHGKPIGIA-----A---ARDGSKPQDAVPGPYG  391 (677)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEEE----EEESSCCSSEEEECTTSCEEECG-----G---GGCTTSCEECSSCTTC
T ss_pred             CcEeeEEEEECCCCEEEEEECCCCCEec----cccccccCcccccCCCCceeecc-----c---cCcCCCccEECcCccc
Confidence            6   678899999999999999997643    11111000 00000000000000     0   0000000 00000111


Q ss_pred             CC---CcccCCCCCcEEEEecC-----------------------------------------CcCeEEEEeCCCcceee
Q 022870          151 DS---KDDVPAEGPKYMAVAGE-----------------------------------------QLSEVEIWDLNTAERCT  186 (291)
Q Consensus       151 ~~---~~~~~~~~~~~~~~~g~-----------------------------------------~d~~i~~wd~~~~~~~~  186 (291)
                      ..   .++++|++..+++.+..                                         ..+.|..||+.+++.+.
T Consensus       392 ~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W  471 (677)
T 1kb0_A          392 AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW  471 (677)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEe
Confidence            11   16677776655542210                                         13789999999999887


Q ss_pred             EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc-cceeEEEeecCCC
Q 022870          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-EPVLCLSIDESCN  265 (291)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~  265 (291)
                      +++.       +.      ...... +.+.   +. .++.++.||.+++||.++ ++.+..+.... ....-+.|..+|+
T Consensus       472 ~~~~-------~~------~~~~g~-~~~~---g~-~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~~~~~~p~~y~~~G~  532 (677)
T 1kb0_A          472 SVEH-------VS------PWNGGT-LTTA---GN-VVFQGTADGRLVAYHAAT-GEKLWEAPTGTGVVAAPSTYMVDGR  532 (677)
T ss_dssp             EEEE-------SS------SCCCCE-EEET---TT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ecCC-------CC------CCcCcc-eEeC---CC-EEEEECCCCcEEEEECCC-CceeeeeeCCCCcccCCEEEEeCCE
Confidence            7763       11      111111 3333   33 678889999999999999 88888887433 2334456667776


Q ss_pred             eeEEe-cC----------------CCeEEEEEcCC
Q 022870          266 GGISG-GA----------------DQKIVLYNLDH  283 (291)
Q Consensus       266 ~l~s~-s~----------------dg~i~vw~~~~  283 (291)
                      .+++. +.                .+.+.+|.+..
T Consensus       533 ~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          533 QYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             EEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             EEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            54432 22                36777777763

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.81  E-value=2.5e-07  Score=73.43  Aligned_cols=54  Identities=13%  Similarity=-0.103  Sum_probs=45.7

Q ss_pred             eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe----------CCCeEEEEECCCCCCCC
Q 022870           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWDIENGGLSS  100 (291)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~  100 (291)
                      +|.+.|..+++.+.++....  .|  .+.++|  |+++++++.          .++.|.+||..+.+...
T Consensus        47 ~vsvID~~t~~v~~~i~vG~--~P--~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAF--LS--LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT--TC--EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             eEEEEECCCCeEEEEEeCCC--CC--ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            88899999999999988765  45  799999  999998876          47899999999987543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.80  E-value=1.3e-05  Score=60.02  Aligned_cols=222  Identities=9%  Similarity=0.022  Sum_probs=128.6

Q ss_pred             EecCCccceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           13 VLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      .+.+-.+.+..++|+|++..| ++...++.|...|.. ++.+..+..... .....|++.+  ++.++++.-.++.+.++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~--~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIG--DNQFVISDERDYAIYVI   96 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECS--TTEEEEEETTTTEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeC--CCEEEEEECCCCcEEEE
Confidence            455666789999999976555 557778999999987 888887754321 2378888888  76666666667889999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (291)
                      ++.......    ..     ....+.....+                        .-.+-..++++|.+..++++.....
T Consensus        97 ~v~~~~~i~----~~-----~~~~~~~~~~~------------------------~N~g~EGLA~d~~~~~L~va~E~~p  143 (255)
T 3qqz_A           97 SLTPNSEVK----IL-----KKIKIPLQESP------------------------TNCGFEGLAYSRQDHTFWFFKEKNP  143 (255)
T ss_dssp             EECTTCCEE----EE-----EEEECCCSSCC------------------------CSSCCEEEEEETTTTEEEEEEESSS
T ss_pred             EcCCCCeee----ee-----eeecccccccc------------------------ccCCcceEEEeCCCCEEEEEECcCC
Confidence            887643110    00     00000000000                        0000011889999988887554422


Q ss_pred             CeEEEEeC-CCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc
Q 022870          172 SEVEIWDL-NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (291)
Q Consensus       172 ~~i~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (291)
                      ..|..|+- .....+..+........ .+    ..-..++. |.|..  ++ +++....+..|.++|..  ++++..+.-
T Consensus       144 ~~i~~~~g~~~~~~l~i~~~~~~~~~-~~----~~d~S~l~-~dp~t--g~-lliLS~~s~~L~~~d~~--g~~~~~~~L  212 (255)
T 3qqz_A          144 IEVYKVNGLLSSNELHISKDKALQRQ-FT----LDDVSGAE-FNQQK--NT-LLVLSHESRALQEVTLV--GEVIGEMSL  212 (255)
T ss_dssp             EEEEEEESTTCSSCCEEEECHHHHHT-CC----SSCCCEEE-EETTT--TE-EEEEETTTTEEEEECTT--CCEEEEEEC
T ss_pred             ceEEEEcccccCCceeeecchhhccc-cc----cCCceeEE-EcCCC--Ce-EEEEECCCCeEEEEcCC--CCEEEEEEc
Confidence            25556651 01111222210000000 01    11245665 99872  55 77778888999999977  555544332


Q ss_pred             cc---------cceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          251 HL---------EPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       251 h~---------~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      ..         ...-+|+|+++|++.++ ++-+.++++.-..
T Consensus       213 ~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~~  253 (255)
T 3qqz_A          213 TKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQS  253 (255)
T ss_dssp             STTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC--
T ss_pred             CCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEecC
Confidence            21         25689999999985555 6777777775443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.79  E-value=7.3e-06  Score=64.16  Aligned_cols=214  Identities=11%  Similarity=0.028  Sum_probs=119.3

Q ss_pred             ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeec------------------CCcceEEEEEeecCC
Q 022870           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS------------------AAHGIVSVATGPSIG   75 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~   75 (291)
                      +.+.-....++++++++++++++..++.|..||..+++.. .+....                  .......+++.+  +
T Consensus        14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~--~   90 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL--Q   90 (322)
T ss_dssp             EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET--T
T ss_pred             cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC--C
Confidence            4443345677899999987888889999999998765433 222100                  002368899986  4


Q ss_pred             CCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcc
Q 022870           76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDD  155 (291)
Q Consensus        76 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (291)
                      ...|+.+...+.|..+|..++....  ....... ..   +   ..+.                             .++
T Consensus        91 ~g~l~v~d~~~~i~~~d~~~g~~~~--~~~~~~~-~~---~---~~p~-----------------------------~i~  132 (322)
T 2fp8_A           91 NNQLYIVDCYYHLSVVGSEGGHATQ--LATSVDG-VP---F---KWLY-----------------------------AVT  132 (322)
T ss_dssp             TTEEEEEETTTEEEEECTTCEECEE--EESEETT-EE---C---SCEE-----------------------------EEE
T ss_pred             CCcEEEEECCCCEEEEeCCCCEEEE--ecccCCC-Cc---c---cccc-----------------------------eEE
Confidence            4566666555668888876543210  0000000 00   0   0000                             045


Q ss_pred             cCC-CCCcEEEEec----------------CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCC
Q 022870          156 VPA-EGPKYMAVAG----------------EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS  218 (291)
Q Consensus       156 ~~~-~~~~~~~~~g----------------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  218 (291)
                      +.+ +|. ++++..                ..++.|..||..+++......        .     ......++ ++|+  
T Consensus       133 ~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--------~-----~~~p~gia-~~~d--  195 (322)
T 2fp8_A          133 VDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK--------E-----LHVPGGAE-VSAD--  195 (322)
T ss_dssp             ECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE--------E-----ESCCCEEE-ECTT--
T ss_pred             EecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc--------C-----CccCcceE-ECCC--
Confidence            677 664 333221                124778999987665432222        0     11223454 9987  


Q ss_pred             CCceEEEeecCCCcEEEEEccCCC-CceeeccccccceeEEEeecCCCeeEEecC----------CCeEEEEEcCCCcee
Q 022870          219 QGFVNVLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDESCNGGISGGA----------DQKIVLYNLDHSTVS  287 (291)
Q Consensus       219 ~g~~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~----------dg~i~vw~~~~~~~~  287 (291)
                       |+.++++-..++.|++|++.... .....+....+ ...++++++|++.++...          .+.|..+|.+ ++++
T Consensus       196 -g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~  272 (322)
T 2fp8_A          196 -SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNIL  272 (322)
T ss_dssp             -SSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEE
T ss_pred             -CCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEE
Confidence             44234444667899999987411 11111111123 788999999987766544          4667788764 5544


Q ss_pred             e
Q 022870          288 H  288 (291)
Q Consensus       288 ~  288 (291)
                      .
T Consensus       273 ~  273 (322)
T 2fp8_A          273 E  273 (322)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.72  E-value=1.3e-06  Score=68.52  Aligned_cols=218  Identities=10%  Similarity=-0.013  Sum_probs=119.7

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccc
Q 022870           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (291)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  109 (291)
                      +..+..++.++.|..+|.. ++..........  .+.++...+  + ..++.++.++.|..+|.. ++...  .......
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~--~~~~~~~~~--~-g~l~vgt~~~~l~~~d~~-g~~~~--~~~~~~~  177 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA--IYATPIVSE--D-GTIYVGSNDNYLYAINPD-GTEKW--RFKTNDA  177 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSC--CCSCCEECT--T-SCEEEECTTSEEEEECTT-SCEEE--EEECSSC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc--eeeeeEEcC--C-CEEEEEcCCCEEEEECCC-CCEeE--EEecCCC
Confidence            3467778888999999988 777666654432  256666665  5 457778888999999988 54322  1111110


Q ss_pred             eEEEEEeecccCccceeccCCCCceeeecccCccc-cccCCCCCC--cccCCCCCcEEEEecCCcCeEEEEeCCCcceee
Q 022870          110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV-DTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT  186 (291)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~  186 (291)
                      ..  ...............  .....++ ...... .........  +...++|. +++  ++.++.+..+|. +++.+.
T Consensus       178 ~~--~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v--~t~~~gl~~~~~-~g~~~~  248 (330)
T 3hxj_A          178 IT--SAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV--TSLDGHLYAINP-DGTEKW  248 (330)
T ss_dssp             CC--SCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE--EETTTEEEEECT-TSCEEE
T ss_pred             ce--eeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE--EcCCCeEEEECC-CCCEeE
Confidence            00  000011111111111  2233333 222111 111111111  66667764 443  333678888885 455555


Q ss_pred             EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCe
Q 022870          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG  266 (291)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  266 (291)
                      .+..        ..    .....+. +.++   +  .|..++.+|.|..+|. + ++.+..+......+.++..++++. 
T Consensus       249 ~~~~--------~~----~~~~~~~-~~~~---g--~l~v~t~~ggl~~~d~-~-g~~~~~~~~~~~~~~~~~~d~~g~-  307 (330)
T 3hxj_A          249 RFKT--------GK----RIESSPV-IGNT---D--TIYFGSYDGHLYAINP-D-GTEKWNFETGSWIIATPVIDENGT-  307 (330)
T ss_dssp             EEEC--------SS----CCCSCCE-ECTT---S--CEEEECTTCEEEEECT-T-SCEEEEEECSSCCCSCCEECTTCC-
T ss_pred             EeeC--------CC----Cccccce-EcCC---C--eEEEecCCCCEEEECC-C-CcEEEEEEcCCccccceEEcCCCE-
Confidence            5542        11    1111222 4433   3  5888888999999996 4 666666665566778888888887 


Q ss_pred             eEEecCCCeEEEEEcCCCce
Q 022870          267 GISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       267 l~s~s~dg~i~vw~~~~~~~  286 (291)
                      |..++.+|.+++...+..+.
T Consensus       308 l~~gt~~G~~~~~~~~~~~~  327 (330)
T 3hxj_A          308 IYFGTRNGKFYALFNLEHHH  327 (330)
T ss_dssp             EEEECTTSCEEEEEC-----
T ss_pred             EEEEcCCCeEEEEecccccc
Confidence            56678899999988766543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.69  E-value=2.8e-06  Score=73.55  Aligned_cols=208  Identities=14%  Similarity=0.093  Sum_probs=122.1

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCc--------ce-EEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCC
Q 022870           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH--------GI-VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (291)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  100 (291)
                      +..++.++.++.|..+|..+|+.+..+.......        .+ ..+.+    .+..++.++.|+.|..+|.++++...
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W  145 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAW  145 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEee
Confidence            4577888889999999999999998876543210        00 11222    34788889999999999999997644


Q ss_pred             CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCC--CCCcEEEEecC----CcCeE
Q 022870          101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA--EGPKYMAVAGE----QLSEV  174 (291)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~----~d~~i  174 (291)
                      +    ....        ......            +.                +..+|  .+..+++.++.    .++.|
T Consensus       146 ~----~~~~--------~~~~~~------------~~----------------~~~sP~v~~g~v~vg~~~~~~~~~g~v  185 (689)
T 1yiq_A          146 S----VDTR--------ADHKRS------------YT----------------ITGAPRVVNGKVVIGNGGAEFGVRGYV  185 (689)
T ss_dssp             E----EECC--------SCTTSC------------CB----------------CCSCCEEETTEEEECCBCTTTCCBCEE
T ss_pred             e----ecCc--------CCCCCC------------cc----------------ccCCcEEECCEEEEEeCCCccCCCCEE
Confidence            1    1100        000000            00                00111  12234432221    36899


Q ss_pred             EEEeCCCcceeeEecccccCCCCCCCCC------------------cceee-eeEEEecCCCCCCceEEEeecCCC----
Q 022870          175 EIWDLNTAERCTRLHQNSCGGSPNFSSK------------------GRGMC-MAVQAYLPSKSQGFVNVLAGYEDG----  231 (291)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~-~~~~~~~p~~~~g~~~l~~g~~dg----  231 (291)
                      +.||.++++.+..+......+.......                  ..+.. ..+. |.|..   . .++.++.++    
T Consensus       186 ~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~-~d~~~---~-~vy~~~~~g~~w~  260 (689)
T 1yiq_A          186 TAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFA-YDPEL---N-LLYIGVGNGSLWD  260 (689)
T ss_dssp             EEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEE-EETTT---T-EEEEECCCEESSC
T ss_pred             EEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCcccccee-EcCCC---C-EEEEeCCCCCccc
Confidence            9999999998877652100000000000                  00011 1343 77763   2 677777765    


Q ss_pred             ---------------cEEEEEccCCCCceeeccc--cc-------cceeEEEeecCCC---eeEEecCCCeEEEEEcCCC
Q 022870          232 ---------------SILVWDIRNPGIPLTAMKV--HL-------EPVLCLSIDESCN---GGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       232 ---------------~i~vwd~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~---~l~s~s~dg~i~vw~~~~~  284 (291)
                                     .|..+|.++ ++.+..++.  |.       .++.-.....+|+   .|+.++.+|.++++|.+++
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  339 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADT-GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG  339 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cCCCCCCCCCceeeeeEEEEEccC-CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence                           399999999 888776653  22       1111112223454   7889999999999999999


Q ss_pred             cee
Q 022870          285 TVS  287 (291)
Q Consensus       285 ~~~  287 (291)
                      +++
T Consensus       340 ~~l  342 (689)
T 1yiq_A          340 ELL  342 (689)
T ss_dssp             CEE
T ss_pred             CEe
Confidence            987

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.68  E-value=3e-07  Score=72.12  Aligned_cols=232  Identities=9%  Similarity=0.006  Sum_probs=120.4

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +++.++..+.....+.....++ .+..++.++.|..|| .+++.+.......  ..+.++...+  + ..++.++.+  |
T Consensus        10 ~~~W~~~~~~~~~~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~--~-g~l~v~t~~--l   80 (330)
T 3hxj_A           10 KIKWEFLIGNSIDSSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGE--IIECRPSIGK--D-GTIYFGSDK--V   80 (330)
T ss_dssp             --CCTTTSCEEECCCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGG--EEEECCEETT--T-TEECCSSCE--E
T ss_pred             eEEEEEeCCCCcccCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCC--CcccceEEec--C-CcEEEecCc--E
Confidence            4444444444434455565566 577778888999999 8888766554433  2356666665  5 456666655  8


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccc-cCCCCC--CcccCCCCCcEEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLCDS--KDDVPAEGPKYMA  165 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~  165 (291)
                      ..+|. +++...    ............... ...............++.. ...... ......  .+...+++. +++
T Consensus        81 ~~~d~-~g~~~~----~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~v  152 (330)
T 3hxj_A           81 YAINP-DGTEKW----RFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYV  152 (330)
T ss_dssp             EEECC-CGGGGG----GSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEE
T ss_pred             EEECC-CCcEEE----EEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEE
Confidence            88886 443322    111111000000011 1111122222223333333 221111 111111  145555664 443


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                        ++.++.+..||.. ++....+..        .    ...+.++. ..++   |  .+..++  +.|..+| .+ ++..
T Consensus       153 --gt~~~~l~~~d~~-g~~~~~~~~--------~----~~~~~~~~-~d~~---g--~l~v~t--~~l~~~d-~~-g~~~  207 (330)
T 3hxj_A          153 --GSNDNYLYAINPD-GTEKWRFKT--------N----DAITSAAS-IGKD---G--TIYFGS--DKVYAIN-PD-GTEK  207 (330)
T ss_dssp             --ECTTSEEEEECTT-SCEEEEEEC--------S----SCCCSCCE-ECTT---C--CEEEES--SSEEEEC-TT-SCEE
T ss_pred             --EcCCCEEEEECCC-CCEeEEEec--------C----CCceeeeE-EcCC---C--EEEEEe--CEEEEEC-CC-CcEE
Confidence              4456899999998 776665552        1    11222232 4433   4  355555  7889999 55 6666


Q ss_pred             eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      .........+.++..++++. |..++.++.|..++.+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g  244 (330)
T 3hxj_A          208 WNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG  244 (330)
T ss_dssp             EEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred             EEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence            66655556788888888876 44455677777777533

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.63  E-value=4.2e-06  Score=65.01  Aligned_cols=157  Identities=12%  Similarity=0.000  Sum_probs=94.0

Q ss_pred             ceEEEEEeecCCCC-eEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc
Q 022870           64 GIVSVATGPSIGLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE  142 (291)
Q Consensus        64 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (291)
                      ......|+|  +++ ++++...++.|..|+.. ++..   .+.........                             
T Consensus        46 ~~egp~~~~--~g~~l~~~d~~~~~i~~~~~~-g~~~---~~~~~~~~~~g-----------------------------   90 (305)
T 3dr2_A           46 WSEGPAWWE--AQRTLVWSDLVGRRVLGWRED-GTVD---VLLDATAFTNG-----------------------------   90 (305)
T ss_dssp             SEEEEEEEG--GGTEEEEEETTTTEEEEEETT-SCEE---EEEESCSCEEE-----------------------------
T ss_pred             CccCCeEeC--CCCEEEEEECCCCEEEEEeCC-CCEE---EEeCCCCccce-----------------------------
Confidence            378899999  887 56677788999999873 3211   11111100000                             


Q ss_pred             cccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCce
Q 022870          143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (291)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~  222 (291)
                                 ++++++|+ +++ +...++.|.+||.. ++. ..+..       .........+..+. +.|+   |. 
T Consensus        91 -----------l~~d~dG~-l~v-~~~~~~~v~~~~~~-g~~-~~~~~-------~~~~~~~~~~~~i~-~d~d---G~-  143 (305)
T 3dr2_A           91 -----------NAVDAQQR-LVH-CEHGRRAITRSDAD-GQA-HLLVG-------RYAGKRLNSPNDLI-VARD---GA-  143 (305)
T ss_dssp             -----------EEECTTSC-EEE-EETTTTEEEEECTT-SCE-EEEEC-------EETTEECSCCCCEE-ECTT---SC-
T ss_pred             -----------eeECCCCC-EEE-EECCCCEEEEECCC-CCE-EEEEe-------ccCCCccCCCCCEE-ECCC---CC-
Confidence                       55888886 444 34445789999986 543 22221       00010112234565 8887   54 


Q ss_pred             EEEe----ecC-------------CCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC------CeEEEE
Q 022870          223 NVLA----GYE-------------DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD------QKIVLY  279 (291)
Q Consensus       223 ~l~~----g~~-------------dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------g~i~vw  279 (291)
                      ++++    |..             .+.|+.||..+ ++.....  .....+.++|+|+++.|+.+...      +.|.+|
T Consensus       144 l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~  220 (305)
T 3dr2_A          144 IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF  220 (305)
T ss_dssp             EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred             EEEeCcCCCccccccccccccccCCCeEEEEcCCC-CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence            5554    432             35688888765 4433322  34567899999999977666554      789999


Q ss_pred             EcCCCc
Q 022870          280 NLDHST  285 (291)
Q Consensus       280 ~~~~~~  285 (291)
                      ++..+.
T Consensus       221 ~~~~~~  226 (305)
T 3dr2_A          221 AWRDGA  226 (305)
T ss_dssp             EEETTE
T ss_pred             EecCCC
Confidence            987654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.62  E-value=9.7e-05  Score=59.33  Aligned_cols=208  Identities=6%  Similarity=-0.089  Sum_probs=119.9

Q ss_pred             cceeEEEEcCC-CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeE-EEEeCCCeEEEEECCCC
Q 022870           19 ASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENG   96 (291)
Q Consensus        19 ~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~   96 (291)
                      .....++|++. +.++++-...+.|..+++..+.....+....  .....+++.+  .+..| ++-...+.|.+.++...
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~--~~p~glavd~--~~g~lY~~d~~~~~I~~~~~dg~  191 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL--ESPGGLAVDW--VHDKLYWTDSGTSRIEVANLDGA  191 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC--SCCCCEEEET--TTTEEEEEETTTTEEEECBTTSC
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC--CCccEEEEEe--CCCeEEEEcCCCCeEEEEeCCCC
Confidence            34678999974 4455566677899999987655433332222  2256788886  44444 45555678888887643


Q ss_pred             CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  176 (291)
                      ....  +..........                                        ++++|.+..++.+-....+.|..
T Consensus       192 ~~~~--l~~~~l~~P~g----------------------------------------iavdp~~g~ly~td~~~~~~I~r  229 (386)
T 3v65_B          192 HRKV--LLWQSLEKPRA----------------------------------------IALHPMEGTIYWTDWGNTPRIEA  229 (386)
T ss_dssp             SCEE--EECSSCSCEEE----------------------------------------EEEETTTTEEEEEECSSSCEEEE
T ss_pred             ceEE--eecCCCCCCcE----------------------------------------EEEEcCCCeEEEeccCCCCEEEE
Confidence            2110  00000000000                                        55777777666543332278999


Q ss_pred             EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccccee
Q 022870          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (291)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (291)
                      +++...........       +     ......++ ++|++  ++ +.++-...+.|..+|+.. ......+........
T Consensus       230 ~~~dG~~~~~~~~~-------~-----~~~PnGla-vd~~~--~~-lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~  292 (386)
T 3v65_B          230 SSMDGSGRRIIADT-------H-----LFWPNGLT-IDYAG--RR-MYWVDAKHHVIERANLDG-SHRKAVISQGLPHPF  292 (386)
T ss_dssp             EETTSCSCEEEECS-------S-----CSCEEEEE-EEGGG--TE-EEEEETTTTEEEEECTTS-CSCEEEECSSCSSEE
T ss_pred             EeCCCCCcEEEEEC-------C-----CCCeeeEE-EeCCC--CE-EEEEECCCCEEEEEeCCC-CeeEEEEECCCCCce
Confidence            98875433322221       1     12345665 88762  33 555666778999999874 332223333344668


Q ss_pred             EEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          257 CLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       257 ~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +|+++. +.++++-...+.|..++..+++..+.+
T Consensus       293 giav~~-~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          293 AITVFE-DSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             EEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEEEC-CEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            888854 455666667888999986666655443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.61  E-value=9.1e-05  Score=57.44  Aligned_cols=230  Identities=7%  Similarity=-0.025  Sum_probs=119.6

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC-C-eE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-G-TV   88 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g-~i   88 (291)
                      +..+... .....++|+++++++++-..++.|..||... +....+...   .....+++.+  +++++++.... + .|
T Consensus        25 ~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~---~~p~gia~~~--dG~l~vad~~~~~~~v   97 (306)
T 2p4o_A           25 ITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVE---GKVSGLAFTS--NGDLVATGWNADSIPV   97 (306)
T ss_dssp             EEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECS---SEEEEEEECT--TSCEEEEEECTTSCEE
T ss_pred             eEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCC---CCceeEEEcC--CCcEEEEeccCCcceE
Confidence            3444322 4578899999998777777889999999764 443333322   3488999999  87765554332 2 46


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc----cc--cc-----cCCCC-CC-cc
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE----TV--DT-----DSLCD-SK-DD  155 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~-----~~~~~-~~-~~  155 (291)
                      ..+|..+++...  ........... .......... .........++.++...    ..  ..     ..... .. -.
T Consensus        98 ~~~d~~~g~~~~--~~~~~~~~~~~-g~~~~~~~~~-~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png  173 (306)
T 2p4o_A           98 VSLVKSDGTVET--LLTLPDAIFLN-GITPLSDTQY-LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  173 (306)
T ss_dssp             EEEECTTSCEEE--EEECTTCSCEE-EEEESSSSEE-EEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             EEEcCCCCeEEE--EEeCCCccccC-cccccCCCcE-EEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence            667766665321  11111111000 0000011111 11111122333333211    10  00     00011 11 12


Q ss_pred             cCCCCCcEEEEecCCcCeEEEEeCCC-cce--eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870          156 VPAEGPKYMAVAGEQLSEVEIWDLNT-AER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (291)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~~wd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (291)
                      ++|++..+++ +-...+.|..||+.. ++.  ...+..        .     .....++ +.++   |. ++++....+.
T Consensus       174 is~dg~~lyv-~d~~~~~I~~~~~~~~g~~~~~~~~~~--------~-----~~P~gi~-vd~d---G~-l~va~~~~~~  234 (306)
T 2p4o_A          174 LKRFGNFLYV-SNTEKMLLLRIPVDSTDKPGEPEIFVE--------Q-----TNIDDFA-FDVE---GN-LYGATHIYNS  234 (306)
T ss_dssp             EEEETTEEEE-EETTTTEEEEEEBCTTSCBCCCEEEEE--------S-----CCCSSEE-EBTT---CC-EEEECBTTCC
T ss_pred             cCcCCCEEEE-EeCCCCEEEEEEeCCCCCCCccEEEec--------c-----CCCCCeE-ECCC---CC-EEEEeCCCCe
Confidence            3788876665 455578999999874 321  111110        0     1123343 7776   54 6666667789


Q ss_pred             EEEEEccCCCCc--eeeccccccceeEEEee---cCCCeeEEecC
Q 022870          233 ILVWDIRNPGIP--LTAMKVHLEPVLCLSID---ESCNGGISGGA  272 (291)
Q Consensus       233 i~vwd~~~~~~~--~~~~~~h~~~v~~~~~~---~~~~~l~s~s~  272 (291)
                      |.++|..  ++.  +..+......+++++|.   +++..|+..+.
T Consensus       235 V~~~~~~--G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          235 VVRIAPD--RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEEECTT--CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEEECCC--CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            9999975  444  22344334568999998   78766654443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.60  E-value=4.4e-06  Score=73.15  Aligned_cols=198  Identities=11%  Similarity=0.023  Sum_probs=106.6

Q ss_pred             ceeEEEEc-CCCCEEEEecC-----CCeEEEEeCCCC-eEEEE-EeeecCCcceEEEEEeecCCCCeEEEEeCC-----C
Q 022870           20 SVTDVCFH-QTKPILFAGTT-----GGELRIWDTVQH-RTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRD-----G   86 (291)
Q Consensus        20 ~v~~l~~~-~~~~~l~s~~~-----dg~v~iwd~~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g   86 (291)
                      .+...+|| |||++||-+..     ..+|+++|+.++ +.+.. +.     .....++|+|  |++.|+....|     .
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-----~~~~~~~Wsp--Dg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-----GTNGEIVWGP--DHTSLFYVTKDETLREN  247 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-----EECSCCEECS--STTEEEEEEECTTCCEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-----CceeeEEEec--CCCEEEEEEECCCCCCC
Confidence            67889999 99998874422     236999999988 63211 11     1134688999  98887766654     2


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (291)
                      .|.++++.++......++..........                                       +.|+|||+.+++.
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~---------------------------------------~~~SpDg~~l~~~  288 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAF---------------------------------------MYKAADTNTLCIG  288 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEE---------------------------------------EEECTTSSEEEEE
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEE---------------------------------------EEECCCCCEEEEE
Confidence            5777777665321100110000000000                                       4599999988775


Q ss_pred             ecC-CcCeEEEEeCCCcc-ee--eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC----CcEEEEEc
Q 022870          167 AGE-QLSEVEIWDLNTAE-RC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----GSILVWDI  238 (291)
Q Consensus       167 ~g~-~d~~i~~wd~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d----g~i~vwd~  238 (291)
                      +.. ....|.++|+.++. ..  ..+..       ..    ....+++. |+..   +. +++....+    ..|..+|+
T Consensus       289 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~-------~~----~~~~~s~~-~~~g---~~-l~~~t~~~~a~~~~L~~~d~  352 (751)
T 2xe4_A          289 SQSPETAEVHLLDLRKGNAHNTLEIVRP-------RE----KGVRYDVQ-MHGT---SH-LVILTNEGGAVNHKLLIAPR  352 (751)
T ss_dssp             EECSSCEEEEEEESSSCTTCCCEEESSC-------CC----TTCCEEEE-EETT---TE-EEEEECTTTCTTCEEEEEET
T ss_pred             ecCCCCceEEEEECCCCCCCceeEEeec-------CC----CCceEEEe-eeeC---CE-EEEEeCCCCCCCcEEEEEcC
Confidence            533 24568889998752 22  33321       11    12222232 3322   33 44444433    46777777


Q ss_pred             cCCCCceee-cccccc--ceeEEEeecCCCeeEEecCCCeE--EEEEc
Q 022870          239 RNPGIPLTA-MKVHLE--PVLCLSIDESCNGGISGGADQKI--VLYNL  281 (291)
Q Consensus       239 ~~~~~~~~~-~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i--~vw~~  281 (291)
                      .++ ..... +..|..  .+.++.+.. +.++++...++..  .++++
T Consensus       353 ~~~-~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          353 GQP-SDWSHVLVDHSEDVFMESIAVRS-NYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TST-TCCCCEEECCCSSEEEEEEEECS-SEEEEEEEETTEEEEEEEEC
T ss_pred             CCc-ccceeeEECCCCCcEEEEEEEEC-CEEEEEEEeCCEEEEEEEec
Confidence            642 22222 333333  455666653 3455677777764  45554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.50  E-value=0.00016  Score=54.78  Aligned_cols=189  Identities=11%  Similarity=0.035  Sum_probs=107.2

Q ss_pred             CEEEEecCCCeEEEEeCCCCeE-----EEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCCCCCCCcc
Q 022870           31 PILFAGTTGGELRIWDTVQHRT-----VSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSL  104 (291)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~  104 (291)
                      .+|+.+.. +.|+.++++....     ...+....  .....++|++  +++.|+ +-..++.|..++........  ..
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~--~~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~--~~   74 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPA--KVIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTT--II   74 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEE--EEEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEE--EE
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCC--CcEEEEEEec--CCCEEEEEECCCCEEEEEecCCCCcEE--EE
Confidence            34555443 4788888765432     11222222  2378999998  656555 44457899999987653210  00


Q ss_pred             ccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcce
Q 022870          105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER  184 (291)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~  184 (291)
                      .........                                        +++++++..++++ ....+.|.++|+.....
T Consensus        75 ~~~~~~p~~----------------------------------------ia~d~~~~~lyv~-d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           75 RQDLGSPEG----------------------------------------IALDHLGRTIFWT-DSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             CTTCCCEEE----------------------------------------EEEETTTTEEEEE-ETTTTEEEEEETTSCSC
T ss_pred             ECCCCCccE----------------------------------------EEEEecCCeEEEE-ECCCCEEEEEEcCCCCE
Confidence            000000000                                        5678877666654 44468899999875432


Q ss_pred             eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC--CCcEEEEEccCCCCceeecc-ccccceeEEEee
Q 022870          185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE--DGSILVWDIRNPGIPLTAMK-VHLEPVLCLSID  261 (291)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~--dg~i~vwd~~~~~~~~~~~~-~h~~~v~~~~~~  261 (291)
                      ......       +     ......++ +.|++  +. ++++...  .+.|..+++..  .....+. ........++++
T Consensus       114 ~~~~~~-------~-----~~~P~~i~-vd~~~--g~-lyv~~~~~~~~~I~~~~~dg--~~~~~~~~~~~~~P~gia~d  175 (267)
T 1npe_A          114 RVLFDT-------G-----LVNPRGIV-TDPVR--GN-LYWTDWNRDNPKIETSHMDG--TNRRILAQDNLGLPNGLTFD  175 (267)
T ss_dssp             EEEECS-------S-----CSSEEEEE-EETTT--TE-EEEEECCSSSCEEEEEETTS--CCCEEEECTTCSCEEEEEEE
T ss_pred             EEEEEC-------C-----CCCccEEE-EeeCC--CE-EEEEECCCCCcEEEEEecCC--CCcEEEEECCCCCCcEEEEc
Confidence            222221       1     12245565 88862  43 3333333  47899998863  2222221 223467899999


Q ss_pred             cCCCee-EEecCCCeEEEEEcCCCc
Q 022870          262 ESCNGG-ISGGADQKIVLYNLDHST  285 (291)
Q Consensus       262 ~~~~~l-~s~s~dg~i~vw~~~~~~  285 (291)
                      +++..| ++-...+.|.+++++...
T Consensus       176 ~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          176 AFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             CCCCEEEEEECCCCEEEEEecCCCc
Confidence            976544 566667899999997643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.48  E-value=5.4e-05  Score=65.37  Aligned_cols=76  Identities=14%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             eEEEEcCCCCEEEEecCCCe-------------------EEEEeCCCCeEEEEEeeecCC-------cceEEEEEeecCC
Q 022870           22 TDVCFHQTKPILFAGTTGGE-------------------LRIWDTVQHRTVSSSWVHSAA-------HGIVSVATGPSIG   75 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg~-------------------v~iwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~   75 (291)
                      ..+++.|+..+++.++.++.                   |..+|..+|+.+..++...+.       .+.....+..  +
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~--~  310 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI--D  310 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE--T
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc--C
Confidence            35788887778888887764                   999999999998887653211       1233333334  5


Q ss_pred             CC---eEEEEeCCCeEEEEECCCCCCC
Q 022870           76 LN---KVISQGRDGTVKCWDIENGGLS   99 (291)
Q Consensus        76 ~~---~l~s~~~dg~i~iwd~~~~~~~   99 (291)
                      |.   .++.++.+|.+.++|.++++.+
T Consensus       311 G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          311 GKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            44   6889999999999999999764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.47  E-value=2.2e-05  Score=67.79  Aligned_cols=207  Identities=14%  Similarity=0.078  Sum_probs=121.0

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCc--------ce-EEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCC
Q 022870           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH--------GI-VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (291)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  100 (291)
                      +..++.++.++.|..+|..+|+.+..+.......        .+ ..+++    .+..++.++.|+.|..+|.++++...
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIW  141 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEee
Confidence            4477778889999999999999998876432210        00 11222    23678888999999999999997654


Q ss_pred             CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCC--CCCcEEEEecC----CcCeE
Q 022870          101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA--EGPKYMAVAGE----QLSEV  174 (291)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~----~d~~i  174 (291)
                      +  ........   ...                                    +.-+|  .+..+++.++.    .++.|
T Consensus       142 ~--~~~~~~~~---~~~------------------------------------~~~~P~v~~~~v~vg~~~~~~~~~g~v  180 (668)
T 1kv9_A          142 S--QQTTDPAK---PYS------------------------------------ITGAPRVVKGKVIIGNGGAEYGVRGFV  180 (668)
T ss_dssp             E--EECSCTTS---SCB------------------------------------CCSCCEEETTEEEECCBCTTTCCBCEE
T ss_pred             e--eccCCCCC---cce------------------------------------ecCCCEEECCEEEEeCCCCCcCCCCEE
Confidence            1  11100000   000                                    00011  12334432221    25899


Q ss_pred             EEEeCCCcceeeEecccccCCCCCCCCC------------------cceee-eeEEEecCCCCCCceEEEeecCCC----
Q 022870          175 EIWDLNTAERCTRLHQNSCGGSPNFSSK------------------GRGMC-MAVQAYLPSKSQGFVNVLAGYEDG----  231 (291)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~-~~~~~~~p~~~~g~~~l~~g~~dg----  231 (291)
                      ..+|.++++.+..+......+.......                  ..+.+ ..+. +.|..  +  .++.++.++    
T Consensus       181 ~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a-~d~~~--~--~vy~~~~~g~~w~  255 (668)
T 1kv9_A          181 SAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMA-YDPEL--D--LLYVGTGNGSPWN  255 (668)
T ss_dssp             EEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEE-EETTT--T--EEEEECCCEESSC
T ss_pred             EEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceE-EcCCC--C--EEEEeCCCCCccc
Confidence            9999999999887753110000000000                  00111 1233 77652  2  677776665    


Q ss_pred             ---------------cEEEEEccCCCCceeeccc--cc-------cceeEEEeecCCC---eeEEecCCCeEEEEEcCCC
Q 022870          232 ---------------SILVWDIRNPGIPLTAMKV--HL-------EPVLCLSIDESCN---GGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       232 ---------------~i~vwd~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~---~l~s~s~dg~i~vw~~~~~  284 (291)
                                     .|..+|.++ ++.+..++.  |.       .++.-..+..+|+   .|+.++.+|.++++|.+++
T Consensus       256 ~~~~~~~~gd~l~~~~v~AlD~~t-G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  334 (668)
T 1kv9_A          256 REVRSPGGGDNLYLSSILAIRPDT-GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG  334 (668)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cCCCCCCCCCceeeeeEEEEcCCC-CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC
Confidence                           499999998 887776653  22       2222222233554   6889999999999999999


Q ss_pred             cee
Q 022870          285 TVS  287 (291)
Q Consensus       285 ~~~  287 (291)
                      +++
T Consensus       335 ~~l  337 (668)
T 1kv9_A          335 KLI  337 (668)
T ss_dssp             CEE
T ss_pred             CEe
Confidence            987

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.47  E-value=2.5e-05  Score=66.11  Aligned_cols=59  Identities=10%  Similarity=-0.077  Sum_probs=42.3

Q ss_pred             CCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .+|.|..||+.+ ++.+.++... ..+.+......+..++.++.||.|+.||.++++++-.
T Consensus       442 ~~g~l~a~D~~t-G~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~  500 (571)
T 2ad6_A          442 EMGQIRAFDLTT-GKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             CCEEEEEECTTT-CCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCCeEEEEECCC-CCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence            458899999998 7777766532 3333333333344677789999999999999998754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.43  E-value=0.00034  Score=55.32  Aligned_cols=244  Identities=5%  Similarity=-0.119  Sum_probs=126.3

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCC
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGG   97 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~   97 (291)
                      +..+|.+..+++ +|+.+. ...|+..++........+...   .....++|.+  ....|+ +-...+.|..+++....
T Consensus        34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~---~~~~~l~~d~--~~~~ly~~D~~~~~I~r~~~~g~~  106 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNL---ENAIALDFHH--RRELVFWSDVTLDRILRANLNGSN  106 (349)
T ss_dssp             TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSC---SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCC---CceEEEEEec--cccEEEEEeccCCceEEEecCCCC
Confidence            445666666654 444333 345888888765544433322   3378999997  545555 54567889999988654


Q ss_pred             CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCC-CCC--cccCCCCCcEEEEecCCcCeE
Q 022870           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC-DSK--DDVPAEGPKYMAVAGEQLSEV  174 (291)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~g~~d~~i  174 (291)
                      ...  +............+..........-.....+...+.+........... ...  ++++|.+..++.+-....+.|
T Consensus       107 ~~~--~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          107 VEE--VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             CEE--EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             ceE--EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence            211  111111111111222111111111111222233333222111110011 111  888987777666433322789


Q ss_pred             EEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccc
Q 022870          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (291)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~  254 (291)
                      ..+++..... ..+..       .    .......++ ++|++  ++ +.++-...+.|..+|+.. ......+......
T Consensus       185 ~r~~~dG~~~-~~~~~-------~----~~~~PnGla-~d~~~--~~-lY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~  247 (349)
T 3v64_C          185 EASSMDGSGR-RIIAD-------T----HLFWPNGLT-IDYAG--RR-MYWVDAKHHVIERANLDG-SHRKAVISQGLPH  247 (349)
T ss_dssp             EEEETTSCSC-EESCC-------S----SCSCEEEEE-EETTT--TE-EEEEETTTTEEEEEETTS-CSCEEEECSSCSS
T ss_pred             EEEeCCCCCc-EEEEE-------C----CCCCcceEE-EeCCC--CE-EEEEECCCCEEEEEeCCC-CceEEEEeCCCCC
Confidence            8888875432 22211       0    122345665 88862  43 555666678999999874 3222223333456


Q ss_pred             eeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       255 v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      ..+|++.. +.++++-...+.|...+..+++....
T Consensus       248 P~giav~~-~~ly~td~~~~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          248 PFAITVFE-DSLYWTDWHTKSINSANKFTGKNQEI  281 (349)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             ceEEEEEC-CEEEEecCCCCeEEEEEccCCCccEE
Confidence            67888854 45566666778898888666655443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.39  E-value=0.00033  Score=54.61  Aligned_cols=199  Identities=14%  Similarity=0.200  Sum_probs=109.0

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC--CCC---eEEEEeC---CCeEEEEECC--CCCCC
Q 022870           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--GLN---KVISQGR---DGTVKCWDIE--NGGLS   99 (291)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~---~l~s~~~---dg~i~iwd~~--~~~~~   99 (291)
                      ..+++....++-+.+||+ +|+.+..+..  .  .+..+..-|..  .|.   ++++...   +++|.+|++.  +..+ 
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g--~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l-  113 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--G--KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL-  113 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--S--CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE-
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--C--CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce-
Confidence            345665566788999999 7888888753  2  26666665510  112   2333333   5799999774  3221 


Q ss_pred             CCCccccccc--eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCccc--CCCCCcEEEEecCCcCeEE
Q 022870          100 SNPSLTIKTN--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV--PAEGPKYMAVAGEQLSEVE  175 (291)
Q Consensus       100 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~d~~i~  175 (291)
                          ..+...  +....    ...+.                             .+++  +|....+.+.....+|.+.
T Consensus       114 ----~~i~~~~~pv~t~----~~~py-----------------------------Glcly~~~~~g~~yafV~~k~G~~~  156 (355)
T 3amr_A          114 ----QSMTDPDHPIATA----INEVY-----------------------------GFTLYHSQKTGKYYAMVTGKEGEFE  156 (355)
T ss_dssp             ----EECSCTTSCEECC----CSSCC-----------------------------CEEEEECTTTCCEEEEEECSSSEEE
T ss_pred             ----eeccccccCcCCC----CCCee-----------------------------EEEEEecCCCCcEEEEEECCCCeEE
Confidence                111000  00000    00000                             0445  5644433222445579999


Q ss_pred             EEeCC-------CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC----CCc
Q 022870          176 IWDLN-------TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP----GIP  244 (291)
Q Consensus       176 ~wd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~----~~~  244 (291)
                      .|++.       +.+.++++..       +      +.+-.+. ..+..  +  .|+.+-++.-|..+|.+-.    .+.
T Consensus       157 q~~l~~~~~g~~~~~lVR~f~l-------g------sq~Egcv-vDd~~--g--~Lyv~eEd~GIw~~da~p~~~~~~~~  218 (355)
T 3amr_A          157 QYELKADKNGYISGKKVRAFKM-------N------SQTEGMA-ADDEY--G--RLYIAEEDEAIWKFSAEPDGGSNGTV  218 (355)
T ss_dssp             EEEEEECTTSCEEEEEEEEEEC-------S------SCEEEEE-EETTT--T--EEEEEETTTEEEEEECSTTSCSCCEE
T ss_pred             EEEEEeCCCCcccceEEEEecC-------C------CCcceEE-EcCCC--C--eEEEecccceEEEEeCCcCCCCCceE
Confidence            99883       3355666663       1      1222333 66542  3  7999999877777775521    234


Q ss_pred             eeecc-cc-ccceeEEEe--ecCCC-eeEEec-CCCeEEEEEcC-CCceeee
Q 022870          245 LTAMK-VH-LEPVLCLSI--DESCN-GGISGG-ADQKIVLYNLD-HSTVSHC  289 (291)
Q Consensus       245 ~~~~~-~h-~~~v~~~~~--~~~~~-~l~s~s-~dg~i~vw~~~-~~~~~~~  289 (291)
                      +..+. ++ ...+..|++  .++++ +|++++ .++++.+||.+ +.+.+-.
T Consensus       219 v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          219 IDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             EEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             EEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            44432 22 246888888  45544 555544 67899999997 5555543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.29  E-value=0.00017  Score=61.19  Aligned_cols=59  Identities=12%  Similarity=-0.060  Sum_probs=40.8

Q ss_pred             CCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .+|.|..||+.+ ++.+.+... ..++.+-.....+.+++.++.||.++.||.++++++-+
T Consensus       451 ~~G~l~A~D~~t-G~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~  509 (599)
T 1w6s_A          451 GLGQIKAYNAIT-GDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK  509 (599)
T ss_dssp             CCEEEEEECTTT-CCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CcCeEEEEECCC-CCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEE
Confidence            458899999998 777766642 22222211222444677789999999999999998754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.24  E-value=0.0009  Score=52.14  Aligned_cols=207  Identities=7%  Similarity=-0.088  Sum_probs=119.2

Q ss_pred             cceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEE-EEEeeecCCcceEEEEEeecCCCC-eEEEEeCCCeEEEEECCC
Q 022870           19 ASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTV-SSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIEN   95 (291)
Q Consensus        19 ~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~   95 (291)
                      ..+..++|++ ++.++.+-...+.|..+++..+... ..+....  .....+++.+  .+. ++++-...+.|.+++++.
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l--~~p~glavd~--~~g~ly~~d~~~~~I~~~~~dG  110 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL--LSPDGLACDW--LGEKLYWTDSETNRIEVSNLDG  110 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC--SCCCEEEEET--TTTEEEEEETTTTEEEEEETTS
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC--CCccEEEEEc--CCCeEEEEECCCCEEEEEECCC
Confidence            3466889998 4555566677789999998765321 1222221  2256788886  444 445555678899999875


Q ss_pred             CCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEE
Q 022870           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE  175 (291)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  175 (291)
                      .....  +..........                                        ++++|.+..++.+-....+.|.
T Consensus       111 ~~~~~--l~~~~~~~P~g----------------------------------------iavdp~~g~ly~td~~~~~~I~  148 (318)
T 3sov_A          111 SLRKV--LFWQELDQPRA----------------------------------------IALDPSSGFMYWTDWGEVPKIE  148 (318)
T ss_dssp             CSCEE--EECSSCSSEEE----------------------------------------EEEEGGGTEEEEEECSSSCEEE
T ss_pred             CcEEE--EEeCCCCCccE----------------------------------------EEEeCCCCEEEEEecCCCCEEE
Confidence            42110  00000000000                                        5566766666654322357888


Q ss_pred             EEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccce
Q 022870          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV  255 (291)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v  255 (291)
                      ..++...........       +     -.....++ ++|++  ++ +.++=+..+.|..+|+.. ........+.....
T Consensus       149 r~~~dG~~~~~~~~~-------~-----l~~Pngla-vd~~~--~~-lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P  211 (318)
T 3sov_A          149 RAGMDGSSRFIIINS-------E-----IYWPNGLT-LDYEE--QK-LYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHP  211 (318)
T ss_dssp             EEETTSCSCEEEECS-------S-----CSCEEEEE-EETTT--TE-EEEEETTTTEEEEEETTS-CSCEEEECSCCSCE
T ss_pred             EEEcCCCCeEEEEEC-------C-----CCCccEEE-EeccC--CE-EEEEECCCCEEEEEcCCC-CceEEEecCCCCCc
Confidence            888864332222221       1     12345665 88862  33 555666788999999874 22222223234566


Q ss_pred             eEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          256 LCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .+++++.+ .++++-...+.|..++..+++....
T Consensus       212 ~glav~~~-~lywtd~~~~~V~~~~~~~G~~~~~  244 (318)
T 3sov_A          212 FALTLFED-ILYWTDWSTHSILACNKYTGEGLRE  244 (318)
T ss_dssp             EEEEEETT-EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             eEEEEeCC-EEEEEecCCCeEEEEECCCCCceEE
Confidence            78888755 4556666778999999987776544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.21  E-value=0.00016  Score=61.39  Aligned_cols=59  Identities=19%  Similarity=0.154  Sum_probs=41.8

Q ss_pred             CCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .+|.|..||+.+ ++.+.+..... ++.+-.....+.+++.++.||.++.||.++++++-.
T Consensus       464 ~~G~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~  522 (582)
T 1flg_A          464 HVGSLRAMDPVS-GKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             CSEEEEEECTTT-CCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CcceEEEEECCC-CCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence            368899999998 77776665432 222222222345677899999999999999998754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.20  E-value=0.0019  Score=57.05  Aligned_cols=242  Identities=10%  Similarity=0.063  Sum_probs=126.4

Q ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe-eecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC
Q 022870           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS   99 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~   99 (291)
                      |.++...+++.+. .|+.++.|..||..+++...... ...  ..|.++...+  ++. |..|+.++-|..||..+.+..
T Consensus       175 i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~--~~i~~i~~d~--~g~-lwigt~~~Gl~~~~~~~~~~~  248 (795)
T 4a2l_A          175 IASTLYRQGDQIY-IGTSTDGLYTYSITQKTFEKVIPILGT--KQIQAILQQS--PTR-IWVATEGAGLFLINPKTKEIK  248 (795)
T ss_dssp             CEEEEEEETTEEE-EEESSSCEEEEETTTCCEEECC----C--CCEEEEEEEE--TTE-EEEEEBSSCEEEEETTTTEEE
T ss_pred             eEEEEECCCCCEE-EEECCCCEEEEeCCCCeEEEecCCCCC--CeeEEEEEcC--CCC-EEEEECCCCeEEEeCCCCeEE
Confidence            8888888887544 46655458899987765443211 122  4488988887  644 555554444888998765432


Q ss_pred             CCCc-----cccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCC-------CCCC---cccCCCCCcEE
Q 022870          100 SNPS-----LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL-------CDSK---DDVPAEGPKYM  164 (291)
Q Consensus       100 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~  164 (291)
                      .-..     ..+.......  +.............. .+..++............       ....   +...++|. +.
T Consensus       249 ~~~~~~~~~~~l~~~~i~~--i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW  324 (795)
T 4a2l_A          249 NYLHSPSNPKSISSNYIRS--LAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MW  324 (795)
T ss_dssp             EECCCTTCTTSCSCSBEEE--EEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EE
T ss_pred             EeecCCCCccccCCCeEEE--EEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EE
Confidence            1000     0111111111  112222222222222 233344332221111100       0111   55567775 44


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                      +  |+.++-|..|+..+... ..+....     .........+.++. ..++   |  .|..|+.++-|..||..+ +..
T Consensus       325 i--gt~~~Gl~~~~~~~~~~-~~~~~~~-----~~~~l~~~~V~~i~-~d~~---g--~lWiGt~~~Gl~~~~~~~-~~~  389 (795)
T 4a2l_A          325 L--GTYFGGLNYYHPIRNRF-KNIRNIP-----YKNSLSDNVVSCIV-EDKD---K--NLWIGTNDGGLNLYNPIT-QRF  389 (795)
T ss_dssp             E--EESSSCEEEECGGGGSS-EEECCCT-----TSSSCSCSSEEEEE-ECTT---S--CEEEEESSSCEEEECTTT-CCE
T ss_pred             E--EECCCCeEEeCCCcccc-eEEcCCC-----CCCCCCCCeeEEEE-ECCC---C--CEEEEECCCCeEEEcCCC-CcE
Confidence            3  33456789998765542 2222100     00011123456654 5544   4  477788888899999876 332


Q ss_pred             eeecc--------ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          245 LTAMK--------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       245 ~~~~~--------~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      .....        .....|.+++.++++..|..|+.++-|..||.+++++.
T Consensus       390 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~  440 (795)
T 4a2l_A          390 TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE  440 (795)
T ss_dssp             EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE
Confidence            22111        12357899999998874556666667999998877653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.20  E-value=0.00036  Score=59.21  Aligned_cols=78  Identities=13%  Similarity=0.110  Sum_probs=51.5

Q ss_pred             cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc
Q 022870          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (291)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (291)
                      +|.|.-||+.+++.+.+.+.       +. . ..+...  . ..     +. +++.|+.||.++.||.++ ++.+.+++.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~-------~~-~-~~~g~~--~-ta-----gg-lvf~g~~dg~l~A~D~~t-G~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKE-------HL-P-LWAGVL--A-TA-----GN-LVFTGTGDGYFKAFDAKS-GKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEE-------SS-C-CCSCCE--E-ET-----TT-EEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecC-------CC-C-Ccccce--E-eC-----CC-EEEEECCCCcEEEEECCC-CCEEEEecC
Confidence            68899999999998877663       11 1 111111  1 11     22 677799999999999999 888888875


Q ss_pred             cccce-eEEEeecCCCee
Q 022870          251 HLEPV-LCLSIDESCNGG  267 (291)
Q Consensus       251 h~~~v-~~~~~~~~~~~l  267 (291)
                      ..... .-+.|..+|+..
T Consensus       526 ~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          526 GSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SSCCCSCCEEEEETTEEE
T ss_pred             CCCcccCceEEEECCEEE
Confidence            43322 236666777644

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.17  E-value=0.00097  Score=56.65  Aligned_cols=211  Identities=13%  Similarity=0.063  Sum_probs=118.0

Q ss_pred             CCEEEEecC-CCeEEEEeC-CCCeEEEEEeeecCCc--c-------eEEEEEeecCCCCe----EEEEeCCCeEEEEECC
Q 022870           30 KPILFAGTT-GGELRIWDT-VQHRTVSSSWVHSAAH--G-------IVSVATGPSIGLNK----VISQGRDGTVKCWDIE   94 (291)
Q Consensus        30 ~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~~--~-------v~~~~~~~~~~~~~----l~s~~~dg~i~iwd~~   94 (291)
                      +..++.++. ++.|.-+|. .+|+.+.++.......  +       ...+++.|  .+..    ++.++.|+.|.-+|.+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p--~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP--GDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC--CCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe--cCCcceeEEEEEcCCCEEEEEECC
Confidence            446777777 899999999 8999988876543210  0       12345544  3345    8888999999999999


Q ss_pred             CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC----C
Q 022870           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE----Q  170 (291)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~  170 (291)
                      +++...+  ........   .......                                ..+ .+ ..+++.++.    .
T Consensus       140 TG~~~W~--~~~~~~~~---~~~~~ss--------------------------------P~v-~~-g~V~vg~~g~e~g~  180 (599)
T 1w6s_A          140 TGETVWK--VENSDIKV---GSTLTIA--------------------------------PYV-VK-DKVIIGSSGAELGV  180 (599)
T ss_dssp             TCCEEEE--EECCCGGG---TCBCCSC--------------------------------CEE-ET-TEEEECCBCGGGTC
T ss_pred             CCCEEEe--ecCCCCCc---cceeecC--------------------------------CEE-EC-CEEEEEecccccCC
Confidence            9976441  11100000   0000000                                001 12 234432211    3


Q ss_pred             cCeEEEEeCCCcceeeEecccccC------CCCCCCCC-------------------cceeee-eEEEecCCCCCCceEE
Q 022870          171 LSEVEIWDLNTAERCTRLHQNSCG------GSPNFSSK-------------------GRGMCM-AVQAYLPSKSQGFVNV  224 (291)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~------~~~~~~~~-------------------~~~~~~-~~~~~~p~~~~g~~~l  224 (291)
                      ++.|+-+|.++++.+-++......      +......+                   ..+.++ ... +.+..  +  .+
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a-~d~~~--g--~v  255 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYA-YDPGT--N--LI  255 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCE-EETTT--T--EE
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCcccccee-EeCCC--C--EE
Confidence            689999999999988776632100      00000000                   000011 122 44442  3  45


Q ss_pred             EeecCC----------------CcEEEEEccCCCCceeeccccc----------cceeEEEee-cCC---CeeEEecCCC
Q 022870          225 LAGYED----------------GSILVWDIRNPGIPLTAMKVHL----------EPVLCLSID-ESC---NGGISGGADQ  274 (291)
Q Consensus       225 ~~g~~d----------------g~i~vwd~~~~~~~~~~~~~h~----------~~v~~~~~~-~~~---~~l~s~s~dg  274 (291)
                      +.++.+                +.|..+|.++ ++.+..++...          .++. +... .+|   ..++.++.+|
T Consensus       256 y~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~T-G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G  333 (599)
T 1w6s_A          256 YFGTGNPAPWNETMRPGDNKWTMTIFGRDADT-GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNG  333 (599)
T ss_dssp             EEECCCCSCSCGGGSCSCCTTSSEEEEEETTT-CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTS
T ss_pred             EEeCCCCccccCcccCCCccccceEEEEeCCC-CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCc
Confidence            555444                4899999998 78776665321          1121 1221 466   5678899999


Q ss_pred             eEEEEEcCCCceee
Q 022870          275 KIVLYNLDHSTVSH  288 (291)
Q Consensus       275 ~i~vw~~~~~~~~~  288 (291)
                      .+++.|.++++++-
T Consensus       334 ~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          334 IVYTLDRTDGALVS  347 (599)
T ss_dssp             EEEEEETTTCCEEE
T ss_pred             EEEEEECCCCCEee
Confidence            99999999999874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.14  E-value=0.00032  Score=60.50  Aligned_cols=73  Identities=8%  Similarity=0.089  Sum_probs=48.2

Q ss_pred             EEEEcC-CCCEEEEecCCC-----------eEEEEeCCCCeEE--EEEeeecCCcceEEEEEeecCCCCeEEEEeC-CCe
Q 022870           23 DVCFHQ-TKPILFAGTTGG-----------ELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGT   87 (291)
Q Consensus        23 ~l~~~~-~~~~l~s~~~dg-----------~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~   87 (291)
                      .+++.+ ++++++.|+.+.           .+.+||..+++..  ..+..... ....++++..  ++.+++.|+. +..
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~-~~~~~~~~~~--~g~lyv~GG~~~~~  266 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD-MFCPGISMDG--NGQIVVTGGNDAKK  266 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC-CSSCEEEECT--TSCEEEECSSSTTC
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC-CccccccCCC--CCCEEEeCCCCCCc
Confidence            456667 888888887543           6889998876532  22222111 1234567777  8888888884 558


Q ss_pred             EEEEECCCCCC
Q 022870           88 VKCWDIENGGL   98 (291)
Q Consensus        88 i~iwd~~~~~~   98 (291)
                      +.+||..+.+.
T Consensus       267 v~~yd~~t~~W  277 (656)
T 1k3i_A          267 TSLYDSSSDSW  277 (656)
T ss_dssp             EEEEEGGGTEE
T ss_pred             eEEecCcCCce
Confidence            99999987654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.14  E-value=0.00098  Score=51.97  Aligned_cols=109  Identities=12%  Similarity=-0.003  Sum_probs=65.0

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcc--eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC--
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE--  229 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~--  229 (291)
                      ++++|+++.++++ -..++.|..||+....  ....+..            ..+ ...+. +.++   |. +.++...  
T Consensus       190 ia~~~dg~~lyv~-d~~~~~I~~~~~~~~~~~~~~~~~~------------~~g-P~gi~-~d~~---G~-l~va~~~~~  250 (322)
T 2fp8_A          190 AEVSADSSFVLVA-EFLSHQIVKYWLEGPKKGTAEVLVK------------IPN-PGNIK-RNAD---GH-FWVSSSEEL  250 (322)
T ss_dssp             EEECTTSSEEEEE-EGGGTEEEEEESSSTTTTCEEEEEE------------CSS-EEEEE-ECTT---SC-EEEEEEEET
T ss_pred             eEECCCCCEEEEE-eCCCCeEEEEECCCCcCCccceEEe------------CCC-CCCeE-ECCC---CC-EEEEecCcc
Confidence            7799998766654 3346889999987532  1111210            011 34454 7776   55 4443332  


Q ss_pred             --------CCcEEEEEccCCCCceeeccccc----cceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          230 --------DGSILVWDIRNPGIPLTAMKVHL----EPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       230 --------dg~i~vwd~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                              .+.|..+|..  ++.+..+....    ..++++++. ++.++++...++.|.++++...
T Consensus       251 ~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             TSSTTSCEEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC---
T ss_pred             cccccCCCccEEEEECCC--CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEecccc
Confidence                    4678888864  66666655332    356777764 5666677777889999998754

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=0.0015  Score=53.24  Aligned_cols=202  Identities=10%  Similarity=0.022  Sum_probs=109.9

Q ss_pred             ceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC-C----eEEEEEC
Q 022870           20 SVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-G----TVKCWDI   93 (291)
Q Consensus        20 ~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g----~i~iwd~   93 (291)
                      ....|+++| ++..|+.+...+.|+.+|++.+....... ..  .....++|++  ++++|+.+... +    .+...+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~--~~P~~ia~d~--~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GL--SKVRTICWTH--EADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CC--SCEEEEEECT--TSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CC--CCcceEEEeC--CCCEEEEEeCCCCcccceEEEEeC
Confidence            457889997 34456555554889999988766544333 22  3478999999  88866665542 2    2333332


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCe
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  173 (291)
                       .+....  .      . ....                                +..-..++++|++..+++ +-..++.
T Consensus       213 -~g~~~~--~------~-~l~~--------------------------------~~~p~giavdp~~g~lyv-~d~~~~~  249 (430)
T 3tc9_A          213 -ESGFKV--I------T-ELTK--------------------------------GQNCNGAETHPINGELYF-NSWNAGQ  249 (430)
T ss_dssp             -GGTSCS--E------E-EEEE--------------------------------CSSCCCEEECTTTCCEEE-EETTTTE
T ss_pred             -CCceee--e------e-eecc--------------------------------CCCceEEEEeCCCCEEEE-EECCCCE
Confidence             222110  0      0 0000                                000011678895445555 3444689


Q ss_pred             EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc---eeeccc
Q 022870          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP---LTAMKV  250 (291)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~  250 (291)
                      |..+|...+........       +.    ......++ |+|+   |+.++++-..++.|+.++.......   ...+.+
T Consensus       250 V~~~~~~~~~~~~~~~~-------~~----~~~P~gia-~~pd---G~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag  314 (430)
T 3tc9_A          250 VFRYDFTTQETTPLFTI-------QD----SGWEFHIQ-FHPS---GNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCG  314 (430)
T ss_dssp             EEEEETTTTEEEEEEEC-------SS----SSCCEEEE-ECTT---SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEE
T ss_pred             EEEEECCCCcEEEEEEc-------CC----CCcceeEE-EcCC---CCEEEEEECCCCEEEEEeCCcccccccceEEEec
Confidence            99999987654222221       00    12344565 9998   5434555567889999887631111   111111


Q ss_pred             c---------------cccee-EEEee--------cCCCeeEEecCCCeEEEEEcCCCc
Q 022870          251 H---------------LEPVL-CLSID--------ESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       251 h---------------~~~v~-~~~~~--------~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      .               -.... .++.+        +++.+.++-...+.|+.++. +++
T Consensus       315 ~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~  372 (430)
T 3tc9_A          315 QQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGR  372 (430)
T ss_dssp             CTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSE
T ss_pred             cCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCc
Confidence            1               01223 45553        44666666666778888883 343

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.13  E-value=0.0016  Score=50.68  Aligned_cols=207  Identities=10%  Similarity=-0.079  Sum_probs=117.4

Q ss_pred             ccceeEEEEcCCC-CEEEEecCCCeEEEEeCCC---CeEEEE-EeeecCCcceEEEEEeecCCCCeE-EEEeCCCeEEEE
Q 022870           18 RASVTDVCFHQTK-PILFAGTTGGELRIWDTVQ---HRTVSS-SWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCW   91 (291)
Q Consensus        18 ~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~---~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw   91 (291)
                      -.....++|++.+ .++++-..++.|..+++..   +..... +....  .....+++.+  .+..| ++-...+.|.+.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~--~~p~glavd~--~~~~ly~~d~~~~~I~~~  104 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW--IHSNIYWTDSVLGTVSVA  104 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC--CCcCEEEEee--cCCeEEEEECCCCEEEEE
Confidence            3456789999854 4555666678999999875   122222 22111  2257888886  44444 455667889999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (291)
                      ++.......  +......           .+.                             .++++|.+..++.+.....
T Consensus       105 ~~~g~~~~~--~~~~~~~-----------~P~-----------------------------~iavdp~~g~ly~~d~~~~  142 (316)
T 1ijq_A          105 DTKGVKRKT--LFRENGS-----------KPR-----------------------------AIVVDPVHGFMYWTDWGTP  142 (316)
T ss_dssp             ETTSSSEEE--EEECTTC-----------CEE-----------------------------EEEEETTTTEEEEEECSSS
T ss_pred             eCCCCceEE--EEECCCC-----------Ccc-----------------------------eEEeCCCCCEEEEEccCCC
Confidence            987532110  0000000           000                             0567787766665432223


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc--
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--  249 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--  249 (291)
                      +.|..+++.... ...+..       .    .-.....++ +.|++  ++ +.++-...+.|..+|+..  .....+.  
T Consensus       143 ~~I~~~~~dG~~-~~~~~~-------~----~~~~P~gla-~d~~~--~~-lY~~D~~~~~I~~~d~dg--~~~~~~~~~  204 (316)
T 1ijq_A          143 AKIKKGGLNGVD-IYSLVT-------E----NIQWPNGIT-LDLLS--GR-LYWVDSKLHSISSIDVNG--GNRKTILED  204 (316)
T ss_dssp             CEEEEEETTSCC-EEEEEC-------S----SCSCEEEEE-EETTT--TE-EEEEETTTTEEEEEETTS--CSCEEEEEC
T ss_pred             CeEEEEcCCCCC-eEEEEE-------C----CCCCceEEE-EeccC--CE-EEEEECCCCeEEEEecCC--CceEEEeec
Confidence            688888886433 333321       1    112345665 88762  33 556666778999999874  2222221  


Q ss_pred             -ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          250 -VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       250 -~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                       ..-....+|+++. +.++++-...+.|..++..+++.+..
T Consensus       205 ~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~g~~~~~  244 (316)
T 1ijq_A          205 EKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNL  244 (316)
T ss_dssp             TTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             CCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCCCcceEE
Confidence             1224567888875 55666777788999999877765544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.10  E-value=0.0023  Score=51.57  Aligned_cols=209  Identities=11%  Similarity=-0.071  Sum_probs=117.0

Q ss_pred             ccceeEEEEcCC-CCEEEEecCCCeEEEEeCCCC----eEEEEEeeecCCcceEEEEEeecCCCC-eEEEEeCCCeEEEE
Q 022870           18 RASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCW   91 (291)
Q Consensus        18 ~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iw   91 (291)
                      -..+..++|++. +.++.+-...+.|..+++...    .....+....  .....+++.+  .+. ++++-...+.|.+.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~--~~p~glavD~--~~~~lY~~d~~~~~I~~~  186 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW--IHSNIYWTDSVLGTVSVA  186 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC--SCEEEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC--CCcccEEEEe--cCCceEEEECCCCeEEEE
Confidence            456788999984 444455566788988987652    1222222122  3367888886  434 44455567788888


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (291)
                      +++......  +.......           |.                             .++++|.+..++.+-....
T Consensus       187 ~~~g~~~~~--l~~~~~~~-----------P~-----------------------------~iavdp~~g~ly~td~~~~  224 (400)
T 3p5b_L          187 DTKGVKRKT--LFRENGSK-----------PR-----------------------------AIVVDPVHGFMYWTDWGTP  224 (400)
T ss_dssp             CTTTCSEEE--EEECSSCC-----------EE-----------------------------EEEEETTTTEEEEEECSSS
T ss_pred             eCCCCceEE--EEeCCCCC-----------cc-----------------------------eEEEecccCeEEEEeCCCC
Confidence            887543210  00000000           00                             0567777666665433334


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc-
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-  250 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-  250 (291)
                      +.|...++...........            .-.....++ +.|++  ++ +.++-...+.|..+|+.. ......... 
T Consensus       225 ~~I~~~~~dG~~~~~~~~~------------~l~~P~gla-vd~~~--~~-lY~aD~~~~~I~~~d~dG-~~~~~~~~~~  287 (400)
T 3p5b_L          225 AKIKKGGLNGVDIYSLVTE------------NIQWPNGIT-LDLLS--GR-LYWVDSKLHSISSIDVNG-GNRKTILEDE  287 (400)
T ss_dssp             CCEEEEETTSCSCEEEECS------------SCSCEEEEE-EETTT--TE-EEEEETTTTEEEEEETTS-CCCEEEEECS
T ss_pred             CEEEEEeCCCCccEEEEEC------------CCCceEEEE-EEeCC--CE-EEEEECCCCEEEEEeCCC-CccEEEEeCC
Confidence            6788888875443332221            112345565 88762  33 555556678999999874 322222221 


Q ss_pred             -cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          251 -HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       251 -h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                       .-....+|++..+ .++++-...+.|..++..+++.+..+
T Consensus       288 ~~l~~P~gl~v~~~-~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          288 KRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             STTSSEEEEEEETT-EEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             CCCCCCEEEEEeCC-EEEEecCCCCeEEEEEcCCCCceEEE
Confidence             2344567888554 45566667788999997777655443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.06  E-value=0.0002  Score=62.15  Aligned_cols=227  Identities=9%  Similarity=-0.060  Sum_probs=115.8

Q ss_pred             CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEE-eCCCeEEEEECCC----CCCCCCCccccccceEEE
Q 022870           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGTVKCWDIEN----GGLSSNPSLTIKTNSYHF  113 (291)
Q Consensus        39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~  113 (291)
                      .+.|+..++...+....+...   ..+..++|.+  .+..|+.+ ...+.|+.+++.+    .....  +..........
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~---~~p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~g  457 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL---RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDG  457 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC---TTCCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCC
T ss_pred             ccceEEEeCCCCcceeeeccC---cceEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcce
Confidence            357888888766554433332   2367899998  65666655 4567899999875    11111  11100001111


Q ss_pred             EEeecccCccceeccCCCCceeeecccCccccc---cCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecc
Q 022870          114 CKLSLVKEPYANAKQANEPKDCYEREVGETVDT---DSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (291)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~  190 (291)
                      ..+.........+-.....+..+++........   .+..-..++++|.+..++++-....+.|..+++..... ..+..
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~  536 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT  536 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESC
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEe
Confidence            111111111111112223333334333221111   11111228899987776653322236788887764322 22211


Q ss_pred             cccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc--ccccceeEEEeecCCCeeE
Q 022870          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--VHLEPVLCLSIDESCNGGI  268 (291)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~  268 (291)
                             .    .......++ |.|++  ++ ++++-...+.|.++|+.. ......+.  .......+|+++.+ .+++
T Consensus       537 -------~----~l~~PnGla-vd~~~--~~-LY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~-~lyw  599 (699)
T 1n7d_A          537 -------E----NIQWPNGIT-LDLLS--GR-LYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED-KVFW  599 (699)
T ss_dssp             -------S----SCSSCCCEE-ECTTT--CC-EEEEETTTTEEEEECSSS-SCCEEECCCSSSCSSCCCCEEETT-EEEE
T ss_pred             -------C----CCCCccEEE-EeccC--CE-EEEEecCCCeEEEEccCC-CceEEEEecCCcCCCceEeEEECC-EEEE
Confidence                   0    012234454 88873  33 556666778999999874 22222221  12234567778776 4556


Q ss_pred             EecCCCeEEEEEcCCCceeeee
Q 022870          269 SGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       269 s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      +....+.|..++..+++.+..|
T Consensus       600 td~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          600 TDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             ECSTTTCEEEEETTTEEEEECC
T ss_pred             EeCCCCeEEEEEccCCCceEEe
Confidence            6667789999998888776654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.04  E-value=0.00094  Score=56.55  Aligned_cols=209  Identities=12%  Similarity=0.078  Sum_probs=115.1

Q ss_pred             CCEEEEecC-CCeEEEEeC-CCCeEEEEEeeecCCc--------ce-EEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870           30 KPILFAGTT-GGELRIWDT-VQHRTVSSSWVHSAAH--------GI-VSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        30 ~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~   98 (291)
                      +..++.++. ++.|.-+|. .+|+.+..........        .+ ..+++    .+..++.++.|+.|..+|.++++.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~  137 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKI  137 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCE
Confidence            346666777 899999999 8999988775432100        00 11222    346888888999999999999876


Q ss_pred             CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCC--CCCcEEEEecC----CcC
Q 022870           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA--EGPKYMAVAGE----QLS  172 (291)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~----~d~  172 (291)
                      ..+  .........   ..                                    +.-+|  .+..+++.+..    .++
T Consensus       138 ~W~--~~~~~~~~~---~~------------------------------------~~~~P~v~~g~v~vg~~~~~~~~~g  176 (571)
T 2ad6_A          138 NWE--VEVCDPKVG---ST------------------------------------LTQAPFVAKDTVLMGCSGAELGVRG  176 (571)
T ss_dssp             EEE--EECCCGGGT---CB------------------------------------CCSCCEEETTEEEEECBCGGGTCCC
T ss_pred             EEE--ecCCCCCcc---ce------------------------------------eccCCEEECCEEEEEecCCccCCCC
Confidence            441  111000000   00                                    00111  12344432221    168


Q ss_pred             eEEEEeCCCcceeeEecccccC------CCCCCCCC-------------------cceee-eeEEEecCCCCCCceEEEe
Q 022870          173 EVEIWDLNTAERCTRLHQNSCG------GSPNFSSK-------------------GRGMC-MAVQAYLPSKSQGFVNVLA  226 (291)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~------~~~~~~~~-------------------~~~~~-~~~~~~~p~~~~g~~~l~~  226 (291)
                      .|..+|.++++.+.++......      +.......                   ..+.+ ..+. +.+.  .+  .++.
T Consensus       177 ~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a-~d~~--~g--~vy~  251 (571)
T 2ad6_A          177 AVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYA-YDPK--LN--LFYY  251 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCE-EETT--TT--EEEE
T ss_pred             EEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEE-EcCC--CC--eEEE
Confidence            9999999999988776531100      00000000                   00000 1122 5554  23  3444


Q ss_pred             ecCC----------------CcEEEEEccCCCCceeeccc--ccc----ceeEE---EeecCCC---eeEEecCCCeEEE
Q 022870          227 GYED----------------GSILVWDIRNPGIPLTAMKV--HLE----PVLCL---SIDESCN---GGISGGADQKIVL  278 (291)
Q Consensus       227 g~~d----------------g~i~vwd~~~~~~~~~~~~~--h~~----~v~~~---~~~~~~~---~l~s~s~dg~i~v  278 (291)
                      ++.+                +.|..+|.++ ++.+..++.  |..    .+.+.   ....+|+   .++.++.+|.+++
T Consensus       252 ~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t-G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~  330 (571)
T 2ad6_A          252 GSGNPAPWNETMRPGDNKWTMTIWGRDLDT-GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYT  330 (571)
T ss_dssp             ECCCCSCSCGGGSCSCCTTTTEEEEEETTT-CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEE
T ss_pred             ECCCCccccCCccCCCceeEEEEEEEecCC-CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEE
Confidence            4321                3699999998 777766652  211    11121   2224663   6778889999999


Q ss_pred             EEcCCCceeee
Q 022870          279 YNLDHSTVSHC  289 (291)
Q Consensus       279 w~~~~~~~~~~  289 (291)
                      +|.++++++-.
T Consensus       331 lD~~tG~~~w~  341 (571)
T 2ad6_A          331 LNRENGNLIVA  341 (571)
T ss_dssp             EETTTCCEEEE
T ss_pred             EECCCCCEEee
Confidence            99999988643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.99  E-value=0.0039  Score=50.02  Aligned_cols=197  Identities=14%  Similarity=0.008  Sum_probs=111.4

Q ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCCCC
Q 022870           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLS   99 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~   99 (291)
                      -+|.+..+.+ +|+.+. ...|+..++........+...   .....++|.+  .+..|+ +-...+.|..+++......
T Consensus        79 ~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~~---~~~~gl~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~  151 (386)
T 3v65_B           79 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNL---ENAIALDFHH--RRELVFWSDVTLDRILRANLNGSNVE  151 (386)
T ss_dssp             SCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECSC---SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred             CeECCccccc-eeEeec-CccceeeccCCCcEEEEecCC---CccEEEEEec--CCCeEEEEeCCCCcEEEEecCCCCcE
Confidence            3455555544 444433 356888888766544433332   3378999997  545554 5456778988988765311


Q ss_pred             CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeC
Q 022870          100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL  179 (291)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~  179 (291)
                      .  +  +...                                      +..-..+++++.+..++++ -...+.|.+.++
T Consensus       152 ~--~--~~~~--------------------------------------~~~p~glavd~~~g~lY~~-d~~~~~I~~~~~  188 (386)
T 3v65_B          152 E--V--VSTG--------------------------------------LESPGGLAVDWVHDKLYWT-DSGTSRIEVANL  188 (386)
T ss_dssp             E--E--ECSS--------------------------------------CSCCCCEEEETTTTEEEEE-ETTTTEEEECBT
T ss_pred             E--E--EeCC--------------------------------------CCCccEEEEEeCCCeEEEE-cCCCCeEEEEeC
Confidence            0  0  0000                                      0000015677766666653 444678888888


Q ss_pred             CCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC-CcEEEEEccCCCCceeeccccccceeEE
Q 022870          180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIRNPGIPLTAMKVHLEPVLCL  258 (291)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d-g~i~vwd~~~~~~~~~~~~~h~~~v~~~  258 (291)
                      ........+..       +     ......++ +.|.+  |. ++++-..+ +.|+.+++.. ..........-...+.|
T Consensus       189 dg~~~~~l~~~-------~-----l~~P~gia-vdp~~--g~-ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGl  251 (386)
T 3v65_B          189 DGAHRKVLLWQ-------S-----LEKPRAIA-LHPME--GT-IYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGL  251 (386)
T ss_dssp             TSCSCEEEECS-------S-----CSCEEEEE-EETTT--TE-EEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEE
T ss_pred             CCCceEEeecC-------C-----CCCCcEEE-EEcCC--Ce-EEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCeeeE
Confidence            75443332221       1     12345555 88762  43 44554445 7899999874 22222222234467899


Q ss_pred             EeecCCCee-EEecCCCeEEEEEcCCC
Q 022870          259 SIDESCNGG-ISGGADQKIVLYNLDHS  284 (291)
Q Consensus       259 ~~~~~~~~l-~s~s~dg~i~vw~~~~~  284 (291)
                      ++++++..| ++-+..+.|..++++..
T Consensus       252 avd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          252 TIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            999755444 55566788999998754

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.98  E-value=0.0099  Score=54.57  Aligned_cols=76  Identities=11%  Similarity=0.031  Sum_probs=51.8

Q ss_pred             ccceeEEEEcCC------CCEEEEecC-CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           18 RASVTDVCFHQT------KPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        18 ~~~v~~l~~~~~------~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      ...|.|+++.|.      +.+++.|.. |++|+|+++.+-+.+........ ....++.+.......+|..|-.||.+..
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence            457999999863      368999986 99999999987666654433211 2345555543213357888989998876


Q ss_pred             EECC
Q 022870           91 WDIE   94 (291)
Q Consensus        91 wd~~   94 (291)
                      +.+.
T Consensus       632 ~~~d  635 (1158)
T 3ei3_A          632 FGLN  635 (1158)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.96  E-value=0.0011  Score=58.04  Aligned_cols=158  Identities=9%  Similarity=0.035  Sum_probs=89.3

Q ss_pred             ceEEEEEe-ecCCCCeEEEE-eCCC----eEEEEECCCC-CCCCCCccccccceEEEEEeecccCccceeccCCCCceee
Q 022870           64 GIVSVATG-PSIGLNKVISQ-GRDG----TVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY  136 (291)
Q Consensus        64 ~v~~~~~~-~~~~~~~l~s~-~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (291)
                      .+...+|+ |  ||++|+-+ +.+|    +|+++|+.++ +....   .+     ...   ...                
T Consensus       175 ~~~~~~~S~P--DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---~~-----~~~---~~~----------------  225 (751)
T 2xe4_A          175 DVMEVKPAPP--EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---KV-----SGT---NGE----------------  225 (751)
T ss_dssp             EEEEEEECTT--TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---CE-----EEE---CSC----------------
T ss_pred             EEeeeEecCC--CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---cc-----cCc---eee----------------
Confidence            47889999 9  99887743 3333    5999999987 53210   00     000   000                


Q ss_pred             ecccCccccccCCCCCCcccCCCCCcEEEEecCCc---CeEEEEeCCCcce--eeEecccccCCCCCCCCCcceeeeeEE
Q 022870          137 EREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL---SEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQ  211 (291)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (291)
                                       ++|+|||+.++.+.-...   ..|+++++.+++.  ...+..       .    .......+.
T Consensus       226 -----------------~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~-------~----~~~~~~~~~  277 (751)
T 2xe4_A          226 -----------------IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE-------H----NPLFSAFMY  277 (751)
T ss_dssp             -----------------CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC-------C----CTTCEEEEE
T ss_pred             -----------------EEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec-------C----CCceEEEEE
Confidence                             569999988876543211   3688888877642  222321       0    112344565


Q ss_pred             EecCCCCCCceEEEeec---CCCcEEEEEccCCCCce--eec-cccccceeEEEeecCCCeeEEecCC----CeEEEEEc
Q 022870          212 AYLPSKSQGFVNVLAGY---EDGSILVWDIRNPGIPL--TAM-KVHLEPVLCLSIDESCNGGISGGAD----QKIVLYNL  281 (291)
Q Consensus       212 ~~~p~~~~g~~~l~~g~---~dg~i~vwd~~~~~~~~--~~~-~~h~~~v~~~~~~~~~~~l~s~s~d----g~i~vw~~  281 (291)
                       |+|+   |+ +|+...   ....|+++|+.++....  ..+ ........++.|+..+.+++....+    ..|..+++
T Consensus       278 -~SpD---g~-~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~  352 (751)
T 2xe4_A          278 -KAAD---TN-TLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPR  352 (751)
T ss_dssp             -ECTT---SS-EEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEET
T ss_pred             -ECCC---CC-EEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcC
Confidence             9998   55 444333   34578889998632122  333 3334556666665544444554443    36777777


Q ss_pred             CC
Q 022870          282 DH  283 (291)
Q Consensus       282 ~~  283 (291)
                      .+
T Consensus       353 ~~  354 (751)
T 2xe4_A          353 GQ  354 (751)
T ss_dssp             TS
T ss_pred             CC
Confidence            64

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.91  E-value=0.0048  Score=48.71  Aligned_cols=203  Identities=9%  Similarity=-0.030  Sum_probs=103.3

Q ss_pred             ceeEEEEcCC-CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCe-EEEEeCCCeEEEEECCCCC
Q 022870           20 SVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        20 ~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~   97 (291)
                      .+..++|++. +.++++-...+.|..+++..+.....+....  .....+++.+  .+.. +++-...+.|.+.++....
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~--~~p~glavd~--~~g~ly~~d~~~~~I~~~~~dG~~  149 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL--ESPGGLAVDW--VHDKLYWTDSGTSRIEVANLDGAH  149 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC--CCccEEEEec--CCCeEEEEcCCCCeEEEEcCCCCc
Confidence            4678899974 4445565677889999987654333332222  2256888886  4444 4555667899999987543


Q ss_pred             CCCCCccccccceEEEEEeecccCccceeccCC-CCceeeecccCccccccCCC-C--CCcccCCCCCcEEEEecCCcCe
Q 022870           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLC-D--SKDDVPAEGPKYMAVAGEQLSE  173 (291)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~g~~d~~  173 (291)
                      ...  +............+.+........-... ..+..++++........... .  ..++++|++..++.+ -...+.
T Consensus       150 ~~~--l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~a-D~~~~~  226 (349)
T 3v64_C          150 RKV--LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHV  226 (349)
T ss_dssp             CEE--EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEE-ETTTTE
T ss_pred             eEE--EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEE-ECCCCE
Confidence            211  1111111222222332222111111111 22222233222111110011 1  118999888777764 444688


Q ss_pred             EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      |..+|+........+..        .    ......++ +. .   +. ++++-...+.|..+|..+ ++....+
T Consensus       227 I~~~~~dG~~~~~~~~~--------~----~~~P~gia-v~-~---~~-ly~td~~~~~V~~~~~~~-G~~~~~i  282 (349)
T 3v64_C          227 IERANLDGSHRKAVISQ--------G----LPHPFAIT-VF-E---DS-LYWTDWHTKSINSANKFT-GKNQEII  282 (349)
T ss_dssp             EEEEETTSCSCEEEECS--------S----CSSEEEEE-EE-T---TE-EEEEETTTTEEEEEETTT-CCSCEEE
T ss_pred             EEEEeCCCCceEEEEeC--------C----CCCceEEE-EE-C---CE-EEEecCCCCeEEEEEccC-CCccEEe
Confidence            99999875433222221        1    12334454 42 1   33 666667788898888655 4444433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.90  E-value=0.0068  Score=49.94  Aligned_cols=209  Identities=9%  Similarity=-0.009  Sum_probs=114.3

Q ss_pred             ceeEEEEcC-CCCEE-EEecCCCeEEEEeCCCCeEEEEEeeec-CCcceEEEEE-------eecCCCCeEEEEeCCC---
Q 022870           20 SVTDVCFHQ-TKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVAT-------GPSIGLNKVISQGRDG---   86 (291)
Q Consensus        20 ~v~~l~~~~-~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~~~l~s~~~dg---   86 (291)
                      ....|+|+| ++..| ++....+.|++.|++++.......... .......++|       ++  +++.|+.+...+   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~--~G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD--EAEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC--TTCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC--CCCEEEEEeCCCCCc
Confidence            356899998 34444 444445679999988776655443321 1134789999       99  888676665543   


Q ss_pred             ----eEEEEECCC-CCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870           87 ----TVKCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (291)
Q Consensus        87 ----~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (291)
                          .|.+.+... +.....+      .......+.   .+                             ..++++|++.
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~------~~~~v~~~~---~p-----------------------------~giavdp~~g  259 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRS------DIQLIAAYK---QC-----------------------------NGATIHPING  259 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTS------CEEEEEEES---CC-----------------------------CCEEECTTTC
T ss_pred             ccCceEEEEecCCCCceeecc------cceeeccCC---Cc-----------------------------eEEEEcCCCC
Confidence                255555333 1111000      000000000   00                             0166889777


Q ss_pred             cEEEEecCCcCeEEEEeCC-------Ccce-----------eeE-ecccccCCCCCCCCCcceeeeeEEEecCCCCCCce
Q 022870          162 KYMAVAGEQLSEVEIWDLN-------TAER-----------CTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~-------~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~  222 (291)
                      .++++ -..++.|..+|+.       ++..           ... +..       +    .......++ |+|+   |..
T Consensus       260 ~LYvt-d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-------~----~~~~p~~ia-~~p~---G~~  323 (496)
T 3kya_A          260 ELYFN-SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-------A----DPSWEFQIF-IHPT---GKY  323 (496)
T ss_dssp             CEEEE-ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-------S----SSSCCEEEE-ECTT---SSE
T ss_pred             eEEEE-ECCCCEEEEEecccccccccCceeecccccccccccceeEec-------C----CCCCceEEE-EcCC---CCE
Confidence            77764 4457889999997       4443           111 110       0    122345665 9998   442


Q ss_pred             EEEeecCCCcEEEEEccCCCCce---eecccc------c---------ccee-EEEee-------cCCCeeEEecCCCeE
Q 022870          223 NVLAGYEDGSILVWDIRNPGIPL---TAMKVH------L---------EPVL-CLSID-------ESCNGGISGGADQKI  276 (291)
Q Consensus       223 ~l~~g~~dg~i~vwd~~~~~~~~---~~~~~h------~---------~~v~-~~~~~-------~~~~~l~s~s~dg~i  276 (291)
                      ++++-+....|+.++.......+   ..+.+.      .         .... .++.+       .++.++++=...+.|
T Consensus       324 lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rI  403 (496)
T 3kya_A          324 AYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCV  403 (496)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEE
T ss_pred             EEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEE
Confidence            34555677899997765311111   112111      0         1244 45555       567777777778899


Q ss_pred             EEEEcCCCc
Q 022870          277 VLYNLDHST  285 (291)
Q Consensus       277 ~vw~~~~~~  285 (291)
                      +.++. ++.
T Consensus       404 r~i~~-~G~  411 (496)
T 3kya_A          404 RKVTP-EGI  411 (496)
T ss_dssp             EEECT-TCB
T ss_pred             EEEeC-CCC
Confidence            99984 443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.89  E-value=0.011  Score=52.22  Aligned_cols=246  Identities=11%  Similarity=0.046  Sum_probs=126.5

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeee-----cCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH-----SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      ...|.++...+++.+. .|+.++-+.+||..+++........     -....|.++...+  +|. |..|..+ -|.+||
T Consensus       214 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~-lWigt~~-Gl~~~~  288 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS--QNR-LWIGTFN-DLNIYH  288 (795)
T ss_dssp             CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT--TSC-EEEEESS-CEEEEE
T ss_pred             CCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC--CCC-EEEEeCC-hhheEc
Confidence            4568888888877544 4554444889998776554322111     0114599998887  755 4455555 488899


Q ss_pred             CCCCCCCCCC-----ccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccC------CCCCC---cccCC
Q 022870           93 IENGGLSSNP-----SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS------LCDSK---DDVPA  158 (291)
Q Consensus        93 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~  158 (291)
                      ..+.+...-.     ...+.......  +................+..++...........      .....   +...+
T Consensus       289 ~~~~~~~~~~~~~~~~~~l~~~~i~~--i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~  366 (795)
T 4a2l_A          289 EGTDSFASYSSNPVENGSLSQRSVRS--IFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK  366 (795)
T ss_dssp             TTTTEEEEECCCTTSTTSCSSSCEEE--EEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred             CCCCeEEEEecCCCCCCCCCCCcEEE--EEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence            8765432100     00111111111  112222223333333333333332221110000      01111   44556


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCC-CCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS-SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (291)
                      +|. +.+  |..++-|..||..+++.........     ... ......+.++. ..++   |. .|..|+.++-|..||
T Consensus       367 ~g~-lWi--Gt~~~Gl~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~v~~i~-~d~~---g~-~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          367 DKN-LWI--GTNDGGLNLYNPITQRFTSYTLQED-----ESARGIGSNNIKAVY-VDEK---KS-LVYIGTHAGGLSILH  433 (795)
T ss_dssp             TSC-EEE--EESSSCEEEECTTTCCEEEECCC-----------CCSCSCEEEEE-EETT---TT-EEEEEETTTEEEEEE
T ss_pred             CCC-EEE--EECCCCeEEEcCCCCcEEEEecCCC-----CcccCCCCccEEEEE-EcCC---CC-EEEEEeCcCceeEEe
Confidence            664 443  4445679999988765432221000     000 00123456654 5444   43 388888888899999


Q ss_pred             ccCCCCceeecc-----ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          238 IRNPGIPLTAMK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       238 ~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      ..+ ++.. .+.     .....|.++..++++.+.+.. .+| +.+|+.+++++.
T Consensus       434 ~~~-~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~  484 (795)
T 4a2l_A          434 RNS-GQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFT  484 (795)
T ss_dssp             TTT-CCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEE
T ss_pred             CCC-CcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEE
Confidence            886 4332 222     234578999999988855554 344 888998776543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.89  E-value=0.0067  Score=49.45  Aligned_cols=202  Identities=10%  Similarity=0.030  Sum_probs=112.6

Q ss_pred             ceeEEEEcCC--CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC----e-EEEEE
Q 022870           20 SVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG----T-VKCWD   92 (291)
Q Consensus        20 ~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~-i~iwd   92 (291)
                      ....++|+|+  +..|+.+...+.|+.+|..++....... ..  .....+++++  +++ |+.+...+    . +...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~--~~P~giavd~--dG~-lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NI--GQCADVNFTL--NGD-MVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CC--SCEEEEEECT--TCC-EEEEECCSCTTSEEEEEEC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CC--CCccEEEECC--CCC-EEEEcCCCCcccceEEEEE
Confidence            3578999984  3345555444889999987776654433 22  3378999999  888 55444322    1 22222


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (291)
                      .... ...         ......                                +..-..++++|++..+++ +-..++
T Consensus       214 ~~~~-~~~---------~~~~~~--------------------------------~~~P~giavd~~~G~lyv-~d~~~~  250 (433)
T 4hw6_A          214 RASG-FTE---------RLSLCN--------------------------------ARGAKTCAVHPQNGKIYY-TRYHHA  250 (433)
T ss_dssp             GGGT-TCC---------EEEEEE--------------------------------CSSBCCCEECTTTCCEEE-CBTTCS
T ss_pred             CCCC-eec---------cccccc--------------------------------cCCCCEEEEeCCCCeEEE-EECCCC
Confidence            2111 000         000000                                000011778884445554 444578


Q ss_pred             eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC-CCc--eeecc
Q 022870          173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIP--LTAMK  249 (291)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~~~--~~~~~  249 (291)
                      .|+.+|..++.....+...      +.    ......++ |+|+   |..++++-...+.|+.++.... +..  ...+.
T Consensus       251 ~V~~~d~~~g~~~~~~~~~------~~----~~~~~~ia-~dpd---G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~a  316 (433)
T 4hw6_A          251 MISSYDPATGTLTEEEVMM------DT----KGSNFHIV-WHPT---GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVC  316 (433)
T ss_dssp             EEEEECTTTCCEEEEEEEC------SC----CSSCEEEE-ECTT---SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEE
T ss_pred             EEEEEECCCCeEEEEEecc------CC----CCCcccEE-EeCC---CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEE
Confidence            9999999877652332210      11    11122465 9998   4424555566789999887521 211  11111


Q ss_pred             cc---------------ccceeEEEe---------ecCCCeeEEecCCCeEEEEEcCCCc
Q 022870          250 VH---------------LEPVLCLSI---------DESCNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       250 ~h---------------~~~v~~~~~---------~~~~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      +.               -.....+++         ++++.+.++-...+.|+.++. ++.
T Consensus       317 g~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          317 GQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             ECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             ecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence            11               124677999         788888788777889999985 443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.88  E-value=0.011  Score=51.91  Aligned_cols=208  Identities=10%  Similarity=-0.095  Sum_probs=115.5

Q ss_pred             ccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCC----eEEEEEeeecCCcceEEEEEeecCCCC-eEEEEeCCCeEEEE
Q 022870           18 RASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCW   91 (291)
Q Consensus        18 ~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iw   91 (291)
                      ...+..|+|++ ++.++++-...+.|+.+++...    .....+....  .....|++.+  .++ ++++-...+.|.+.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l--~~P~GLAvD~--~~~~LY~tD~~~~~I~v~  498 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDW--IHSNIYWTDSVLGTVSVA  498 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC--CCcceeeeee--cCCcEEEEecCCCeEEEE
Confidence            44567889988 4545556666788988888642    1222222122  2367888887  554 44455667889999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (291)
                      ++.......  +..........                                        ++++|.+.+++.+-....
T Consensus       499 ~ldG~~~~~--l~~~~l~~P~g----------------------------------------IaVDp~~g~LYwtD~g~~  536 (791)
T 3m0c_C          499 DTKGVKRKT--LFRENGSKPRA----------------------------------------IVVDPVHGFMYWTDWGTP  536 (791)
T ss_dssp             ETTSSSEEE--EEECTTCCEEE----------------------------------------EEEETTTTEEEEEECSSS
T ss_pred             eCCCCeEEE--EEeCCCCCcce----------------------------------------EEEecCCCCEEEecCCCC
Confidence            987543210  00000000000                                        567787666665433323


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc-
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-  250 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-  250 (291)
                      +.|...++........+..        .    ......++ +.+..  ++ ++++-...+.|..+++.. ......+.. 
T Consensus       537 ~~I~~~~~dG~~~~~lv~~--------~----l~~P~GLa-vD~~~--~~-LYwaD~~~~~I~~~d~dG-~~~~~v~~~~  599 (791)
T 3m0c_C          537 AKIKKGGLNGVDIYSLVTE--------N----IQWPNGIT-LDLLS--GR-LYWVDSKLHSISSIDVNG-GNRKTILEDE  599 (791)
T ss_dssp             CEEEEEETTSCCEEEEECS--------S----CSCEEEEE-EETTT--TE-EEEEETTTTEEEEEETTS-CSCEEEEECT
T ss_pred             CeEEEEecCCCceEEEEeC--------C----CCCceEEE-EecCC--Ce-EEEEeCCCCcEEEEecCC-CceEEEecCC
Confidence            7899999875444333321        1    12345565 77662  43 445556677899999874 322222222 


Q ss_pred             -cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          251 -HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       251 -h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                       .-....+|++..+ .++++-...+.|...+..+++.+..
T Consensus       600 ~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~  638 (791)
T 3m0c_C          600 KRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNL  638 (791)
T ss_dssp             TTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             CccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEE
Confidence             1234567777654 4455656678888888777655444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.86  E-value=0.0032  Score=51.32  Aligned_cols=216  Identities=10%  Similarity=0.014  Sum_probs=108.3

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecC-CC----eEEEEeCCCCeEE--EEEeeecCCcceEEEEEeecCCCCeEE-EEe
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTT-GG----ELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVI-SQG   83 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~-dg----~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~   83 (291)
                      ..+.........++|+++|++|+.+.. ++    .+.+.+. .+...  ..+...   .....+++.|  +...|+ +-.
T Consensus       172 ~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~---~~p~giavdp--~~g~lyv~d~  245 (430)
T 3tc9_A          172 STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKG---QNCNGAETHP--INGELYFNSW  245 (430)
T ss_dssp             EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEEC---SSCCCEEECT--TTCCEEEEET
T ss_pred             EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccC---CCceEEEEeC--CCCEEEEEEC
Confidence            333334455788999999985655543 22    3433443 23221  223222   2257788888  444444 545


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                      .++.|..++..+.....  .......          ..+.                             .++|+|+++.+
T Consensus       246 ~~~~V~~~~~~~~~~~~--~~~~~~~----------~~P~-----------------------------gia~~pdG~~l  284 (430)
T 3tc9_A          246 NAGQVFRYDFTTQETTP--LFTIQDS----------GWEF-----------------------------HIQFHPSGNYA  284 (430)
T ss_dssp             TTTEEEEEETTTTEEEE--EEECSSS----------SCCE-----------------------------EEEECTTSSEE
T ss_pred             CCCEEEEEECCCCcEEE--EEEcCCC----------Ccce-----------------------------eEEEcCCCCEE
Confidence            67889999987543210  0000000          0000                             06799999866


Q ss_pred             EEEecCCcCeEEEEeCCC--cce--eeEecccccCCCCCCCCC-----cceeee-eEEEecCC-----CCCCceEEEeec
Q 022870          164 MAVAGEQLSEVEIWDLNT--AER--CTRLHQNSCGGSPNFSSK-----GRGMCM-AVQAYLPS-----KSQGFVNVLAGY  228 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~p~-----~~~g~~~l~~g~  228 (291)
                      ++ +-...+.|..++...  ++.  +..+....  ...+....     .-.... .+. ..+.     ..+|. ++++=.
T Consensus       285 yv-~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~--g~~g~~dg~~~~a~~~~P~~gv~-v~~~~y~~~D~~g~-lyvaD~  359 (430)
T 3tc9_A          285 YI-VVVNQHYILRSDYDWKTKRLTTPYIVCGQQ--GAKDWVDGVGKKARMHAPRQGTF-VKNPAYKGSSDEYD-FYFCDR  359 (430)
T ss_dssp             EE-EETTTTEEEEEEEETTTTEECCCEEEEECT--TCBCCBCEEGGGCBBSSEEEEEE-EECGGGTTSSCCEE-EEEEEG
T ss_pred             EE-EECCCCEEEEEeCCcccccccceEEEeccC--CCCCCCCCCCcceEeCCCcceEE-EccccccccCCCCe-EEEEEC
Confidence            65 444578899987653  221  12221100  00011000     000111 221 2211     12243 445555


Q ss_pred             CCCcEEEEEccCCCCceeecccc------------------ccceeEEEeec-CCCeeEEecCCCeEEEEEcC
Q 022870          229 EDGSILVWDIRNPGIPLTAMKVH------------------LEPVLCLSIDE-SCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       229 ~dg~i~vwd~~~~~~~~~~~~~h------------------~~~v~~~~~~~-~~~~l~s~s~dg~i~vw~~~  282 (291)
                      .++.|+.++. + +.. ..+.+.                  -.....|++++ ++.++++-...+.|+.++++
T Consensus       360 ~n~~I~~i~~-~-G~v-~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          360 ENHCIRILTP-Q-GRV-TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             GGTEEEEECT-T-SEE-EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCcEEEEECC-C-CcE-EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            6678888873 2 432 222211                  12578999998 57777777777889988765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.81  E-value=0.013  Score=50.28  Aligned_cols=203  Identities=8%  Similarity=-0.102  Sum_probs=118.6

Q ss_pred             cceeEEEEcCCC-CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCC-eEEEEeCCCeEEEEECCCC
Q 022870           19 ASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        19 ~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~   96 (291)
                      ..+..++|++.+ ..+.+-..++.|..+++........+....  .....+++.+  .+. ++++-...+.|.+.++...
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~--~~P~GlAvD~--~~~~LY~tD~~~~~I~v~~~dG~  112 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL--DYPEGMAVDW--LGKNLYWADTGTNRIEVSKLDGQ  112 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEET--TTTEEEEEETTTTEEEEEETTST
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC--CCcceEEEEe--CCCEEEEEECCCCEEEEEecCCC
Confidence            356789999854 445566678899999987544333333222  2256888876  444 4455556778999988754


Q ss_pred             CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  176 (291)
                      ....  +.. ....          .|.                             .++++|....++.+--...+.|..
T Consensus       113 ~~~~--l~~-~~l~----------~P~-----------------------------~iavdp~~G~lY~tD~g~~~~I~r  150 (628)
T 4a0p_A          113 HRQV--LVW-KDLD----------SPR-----------------------------ALALDPAEGFMYWTEWGGKPKIDR  150 (628)
T ss_dssp             TCEE--EEC-SSCC----------CEE-----------------------------EEEEETTTTEEEEEECSSSCEEEE
T ss_pred             cEEE--EEe-CCCC----------Ccc-----------------------------cEEEccCCCeEEEeCCCCCCEEEE
Confidence            2110  100 0000          000                             056777666666543222567888


Q ss_pred             EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccccee
Q 022870          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (291)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (291)
                      .++..........        .     ......++ +.+++  ++ +.++-...+.|..+|+.. ... ..+...-....
T Consensus       151 ~~~dG~~~~~l~~--------~-----~~~P~Gla-lD~~~--~~-LY~aD~~~~~I~~~d~dG-~~~-~v~~~~l~~P~  211 (628)
T 4a0p_A          151 AAMDGSERTTLVP--------N-----VGRANGLT-IDYAK--RR-LYWTDLDTNLIESSNMLG-LNR-EVIADDLPHPF  211 (628)
T ss_dssp             EETTSCSCEEEEC--------S-----CSSEEEEE-EETTT--TE-EEEEETTTTEEEEEETTS-CSC-EEEEECCSCEE
T ss_pred             EeCCCCceEEEEC--------C-----CCCcceEE-Ecccc--CE-EEEEECCCCEEEEEcCCC-Cce-EEeeccCCCce
Confidence            8886554332222        1     12345565 88762  33 555556778999999975 222 33433344567


Q ss_pred             EEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          257 CLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       257 ~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      +|++.. +.++++-...+.|...|..+++..
T Consensus       212 glav~~-~~ly~tD~~~~~I~~~dk~tg~~~  241 (628)
T 4a0p_A          212 GLTQYQ-DYIYWTDWSRRSIERANKTSGQNR  241 (628)
T ss_dssp             EEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence            888877 455566666789999997766543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.77  E-value=0.018  Score=50.78  Aligned_cols=241  Identities=8%  Similarity=-0.003  Sum_probs=120.1

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe-------e-----ecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-------V-----HSAAHGIVSVATGPSIGLNKVISQGRD   85 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d   85 (291)
                      ...|.++...++|. |..|+..+-|.++|..+++......       .     .-....|.++...+  +| .|..|..+
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g-~lWigt~~  332 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FN-NIWIGTWG  332 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SC-CEEEEEBS
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CC-CEEEEecC
Confidence            35688998888884 5556664568889987665332211       0     00113589998887  64 56667766


Q ss_pred             CeEEEEECCCCCCCCCC-------ccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccC--C-CCCC--
Q 022870           86 GTVKCWDIENGGLSSNP-------SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS--L-CDSK--  153 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~--  153 (291)
                      +-|..|+..+.....-.       ...+......  .+.............+..+..++...........  . ....  
T Consensus       333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~--~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~  410 (781)
T 3v9f_A          333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS--SVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL  410 (781)
T ss_dssp             SCEEEECSSCCSCEEEC----CCCSSCCSSSCEE--EEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred             CeEEEeCCCCCcceeeccCccccccCCCCCcceE--EEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence            77888988765421100       0011111111  1111222222222222233333332221111000  0 0111  


Q ss_pred             -cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870          154 -DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS  232 (291)
Q Consensus       154 -~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~  232 (291)
                       +...+++. +.+  |..++-+..+|.++++.. .+..       .  ......+.++. ..++   |  .|..|+. +-
T Consensus       411 ~i~~d~~g~-lWi--gt~~~Gl~~~~~~~~~~~-~~~~-------~--~~~~~~v~~i~-~d~~---g--~lwigt~-~G  470 (781)
T 3v9f_A          411 CSLKDSEGN-LWF--GTYLGNISYYNTRLKKFQ-IIEL-------E--KNELLDVRVFY-EDKN---K--KIWIGTH-AG  470 (781)
T ss_dssp             EEEECTTSC-EEE--EETTEEEEEECSSSCEEE-ECCS-------T--TTCCCCEEEEE-ECTT---S--EEEEEET-TE
T ss_pred             EEEECCCCC-EEE--EeccCCEEEEcCCCCcEE-Eecc-------C--CCCCCeEEEEE-ECCC---C--CEEEEEC-Cc
Confidence             44455654 443  333467999998776532 2221       0  11123455554 5444   4  4666666 56


Q ss_pred             EEEEEccCCCCceeecccc-----ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          233 ILVWDIRNPGIPLTAMKVH-----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       233 i~vwd~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      |..||..+ ++........     ...|.++..+++|.+.+....+| +..|+.+++++
T Consensus       471 l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~  527 (781)
T 3v9f_A          471 VFVIDLAS-KKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV  527 (781)
T ss_dssp             EEEEESSS-SSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE
T ss_pred             eEEEeCCC-CeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE
Confidence            89999876 4332221111     35789999999988555443345 77788776654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.75  E-value=0.0083  Score=48.90  Aligned_cols=218  Identities=11%  Similarity=0.050  Sum_probs=108.9

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecCC---Ce-EEEEeCCCCeE-EEEEeeecCCcceEEEEEeecCCCCeEE-EEeCC
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTTG---GE-LRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD   85 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~d---g~-v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d   85 (291)
                      .++.+.......++|+++|.++++....   .. +...+...+.. ...+.. .  .....+++.|  +...|+ +-..+
T Consensus       175 ~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~-~--~~P~giavd~--~~G~lyv~d~~~  249 (433)
T 4hw6_A          175 DIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCN-A--RGAKTCAVHP--QNGKIYYTRYHH  249 (433)
T ss_dssp             EEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEE-C--SSBCCCEECT--TTCCEEECBTTC
T ss_pred             EEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccc-c--CCCCEEEEeC--CCCeEEEEECCC
Confidence            3333344557899999999854544321   12 33333222111 111221 1  2246778887  444455 44456


Q ss_pred             CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870           86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA  165 (291)
Q Consensus        86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                      +.|+.+|..++..... +........          +                             ..++|+|+++.+++
T Consensus       250 ~~V~~~d~~~g~~~~~-~~~~~~~~~----------~-----------------------------~~ia~dpdG~~LYv  289 (433)
T 4hw6_A          250 AMISSYDPATGTLTEE-EVMMDTKGS----------N-----------------------------FHIVWHPTGDWAYI  289 (433)
T ss_dssp             SEEEEECTTTCCEEEE-EEECSCCSS----------C-----------------------------EEEEECTTSSEEEE
T ss_pred             CEEEEEECCCCeEEEE-EeccCCCCC----------c-----------------------------ccEEEeCCCCEEEE
Confidence            7898888875542110 000000000          0                             00679999986665


Q ss_pred             EecCCcCeEEEEeCCC--cce--eeEecccccCCCCCCCCC-----cceeeeeEEEecC------CCCCCceEEEeecCC
Q 022870          166 VAGEQLSEVEIWDLNT--AER--CTRLHQNSCGGSPNFSSK-----GRGMCMAVQAYLP------SKSQGFVNVLAGYED  230 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p------~~~~g~~~l~~g~~d  230 (291)
                       +-...+.|+.+|...  +..  ...+....  ...+....     .-.....++ +.+      +..+|. ++++-..+
T Consensus       290 -ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~--g~~g~~dg~~~~a~~~~P~gia-v~~n~~y~~dd~~g~-lyvaD~~n  364 (433)
T 4hw6_A          290 -IYNGKHCIYRVDYNRETGKLAVPYIVCGQH--SSPGWVDGMGTGARLWGPNQGI-FVKNEAYAGEEDEYD-FYFCDRDS  364 (433)
T ss_dssp             -EETTTTEEEEEEBCTTTCCBCCCEEEEECT--TCCCCBCEEGGGSBCSSEEEEE-EEECGGGTTSSCCEE-EEEEETTT
T ss_pred             -EeCCCCEEEEEeCCCCCcccCcEEEEEecC--CCCccCCCcccceEEcCCccEE-EEccccccccCCCCc-EEEEECCC
Confidence             444568899988652  221  11221000  00011100     011234454 611      112254 55666677


Q ss_pred             CcEEEEEccCCCCceeecccc------------------ccceeEEEee-cCCCeeEEecCCCeEEEEEcC
Q 022870          231 GSILVWDIRNPGIPLTAMKVH------------------LEPVLCLSID-ESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h------------------~~~v~~~~~~-~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      +.|+.++..  +. +..+.+.                  -....+|+++ +++.++++=...+.|+..+++
T Consensus       365 ~~I~~~~~~--G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          365 HTVRVLTPE--GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TEEEEECTT--SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CEEEEECCC--CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            889998853  42 2222211                  1246789999 778777777778889988875

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.74  E-value=0.019  Score=50.44  Aligned_cols=201  Identities=12%  Similarity=-0.009  Sum_probs=107.8

Q ss_pred             eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCCCCC
Q 022870           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSS  100 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~  100 (291)
                      +|.+..+.. +|+.+. ...|+..++...+....+.. .  ..+..|+|.+  ....|+ +-...+.|+.+++.......
T Consensus       388 ~C~~~~~~p-~Ll~an-~~~Ir~i~l~~~~~~~l~~~-~--~~~~gl~~d~--~~~~lY~sD~~~~~I~~~~l~g~~~~~  460 (791)
T 3m0c_C          388 ACKAVGSIA-YLFFTN-RHEVRKMTLDRSEYTSLIPN-L--RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVS  460 (791)
T ss_dssp             CCEETTSCC-EEEEEC-BSSEEEECTTSCCCEEEECS-C--SSEEEEEEET--TTTEEEEEETTTTEEEEEEC-------
T ss_pred             eeeeccccc-cccccc-ccceeEeeccCCcceeeecC-C--CceEEEeecc--cCCeeEEeeccceeEEEEeccCCCCCc
Confidence            344443333 344333 35688888876554443333 2  3378999988  445544 55556788888887532100


Q ss_pred             CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCC
Q 022870          101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN  180 (291)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~  180 (291)
                      .....+..         .                             +..-..+++.+.+.++++ +-...+.|.+.++.
T Consensus       461 ~~~~vi~~---------~-----------------------------l~~P~GLAvD~~~~~LY~-tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          461 SYDTVISR---------D-----------------------------IQAPDGLAVDWIHSNIYW-TDSVLGTVSVADTK  501 (791)
T ss_dssp             -CEEEECS---------S-----------------------------CSCCCEEEEETTTTEEEE-EETTTTEEEEEETT
T ss_pred             ceeEEEec---------C-----------------------------CCCcceeeeeecCCcEEE-EecCCCeEEEEeCC
Confidence            00000000         0                             000001667777777766 44457899999998


Q ss_pred             CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee-cCCCcEEEEEccCCCCceeeccccccceeEEE
Q 022870          181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS  259 (291)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~  259 (291)
                      .......+..        .    ......++ +.|..  |. ++++- +..+.|.+.++.. ......+...-...++|+
T Consensus       502 G~~~~~l~~~--------~----l~~P~gIa-VDp~~--g~-LYwtD~g~~~~I~~~~~dG-~~~~~lv~~~l~~P~GLa  564 (791)
T 3m0c_C          502 GVKRKTLFRE--------N----GSKPRAIV-VDPVH--GF-MYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGIT  564 (791)
T ss_dssp             SSSEEEEEEC--------T----TCCEEEEE-EETTT--TE-EEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEE
T ss_pred             CCeEEEEEeC--------C----CCCcceEE-EecCC--CC-EEEecCCCCCeEEEEecCC-CceEEEEeCCCCCceEEE
Confidence            6543333321        1    12245565 87762  43 33443 3337899999874 332222333335789999


Q ss_pred             eecCCCeeE-EecCCCeEEEEEcCCCc
Q 022870          260 IDESCNGGI-SGGADQKIVLYNLDHST  285 (291)
Q Consensus       260 ~~~~~~~l~-s~s~dg~i~vw~~~~~~  285 (291)
                      +++....|+ +=...+.|...+++...
T Consensus       565 vD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          565 LDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            996555554 44556789999886543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.69  E-value=0.01  Score=45.92  Aligned_cols=214  Identities=9%  Similarity=0.103  Sum_probs=112.7

Q ss_pred             EecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEE-Eee----ecCCcceEEEEE---eecCCCCeEEEEe
Q 022870           13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSS-SWV----HSAAHGIVSVAT---GPSIGLNKVISQG   83 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~----~~~~~~v~~~~~---~~~~~~~~l~s~~   83 (291)
                      .+++..----+.+|++ ++.++++.-..++|..||...+..... +..    ......+..|.|   .|  ++.++++..
T Consensus         7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~--~grL~vv~~   84 (334)
T 2p9w_A            7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN--SKRLFAVMK   84 (334)
T ss_dssp             EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS--CCEEEEEEE
T ss_pred             EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC--CCcEEEEEc
Confidence            3444444456789988 454455555899999999875543332 221    111123689999   57  755665433


Q ss_pred             -------------CCCeEEEEECC---CCCCCCCCcccccc-----------ceEEEEEeecccCccceeccCCCCceee
Q 022870           84 -------------RDGTVKCWDIE---NGGLSSNPSLTIKT-----------NSYHFCKLSLVKEPYANAKQANEPKDCY  136 (291)
Q Consensus        84 -------------~dg~i~iwd~~---~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (291)
                                   .+..|..||+.   +++...  ...+..           .......                     
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~--~~dL~~~~~~~~~~~g~~~~~~nD---------------------  141 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVW--SVNFEKVQDEFEKKAGKRPFGVVQ---------------------  141 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSE--EEESHHHHHHHHHHHSSCCEEEEE---------------------
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCEEE--EecCccccccccccccccccCCce---------------------
Confidence                         26789999998   665433  111110           0000000                     


Q ss_pred             ecccCccccccCCCCCCcccCCCCCcEEEEecCCc-CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecC
Q 022870          137 EREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL-SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (291)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  215 (291)
                                       ++..++|+-++  +++.. +.|...+.........+...      . ......-...+. +.|
T Consensus       142 -----------------vavD~~GnaYV--t~s~~~~~I~rV~pdG~~~~~~~~~~------~-~~~~~~G~nGIv-~~p  194 (334)
T 2p9w_A          142 -----------------SAQDRDGNSYV--AFALGMPAIARVSADGKTVSTFAWES------G-NGGQRPGYSGIT-FDP  194 (334)
T ss_dssp             -----------------EEECTTSCEEE--EEEESSCEEEEECTTSCCEEEEEECC------C-CSSSCCSCSEEE-EET
T ss_pred             -----------------eEECCCCCEEE--eCCCCCCeEEEEeCCCCEEeeeeecC------C-CcccccCcceEE-EeC
Confidence                             55778886555  44445 66777776644222111110      0 000111234454 999


Q ss_pred             CCCCCceEEEeecCCCcEEEEEccCCCC-ceeecc--cc---ccceeEE-EeecCCCe-eEEecCCCeEEEEEcCC
Q 022870          216 SKSQGFVNVLAGYEDGSILVWDIRNPGI-PLTAMK--VH---LEPVLCL-SIDESCNG-GISGGADQKIVLYNLDH  283 (291)
Q Consensus       216 ~~~~g~~~l~~g~~dg~i~vwd~~~~~~-~~~~~~--~h---~~~v~~~-~~~~~~~~-l~s~s~dg~i~vw~~~~  283 (291)
                      +   |. .|++....|.|..+|++++.. ++. +.  +.   -.....| ....+|+. |++.+..+.+.+.+-+.
T Consensus       195 d---g~-~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          195 H---SN-KLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             T---TT-EEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             C---CC-EEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            8   55 555554499999999985322 021 11  21   1123343 44456666 55555666666655443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.68  E-value=0.025  Score=49.94  Aligned_cols=243  Identities=10%  Similarity=-0.005  Sum_probs=122.9

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe-------eecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      ...|.++...++|. |-.|+.++-|..++..++.......       ..-....|.++...+  ++ .|..|+.++-|..
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g-~lWigt~~~Gl~~  387 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--QG-KLWIGTDGGGINV  387 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT--TS-CEEEEEBSSCEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC--CC-CEEEEeCCCcEEE
Confidence            45799999998885 6667766778899876554322111       000113488888877  64 5666676666888


Q ss_pred             EECCCCCCCCCC-ccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccC--CCCCC---cccCCCCCcEE
Q 022870           91 WDIENGGLSSNP-SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS--LCDSK---DDVPAEGPKYM  164 (291)
Q Consensus        91 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~  164 (291)
                      ||..+.....-. ...+......  .+...................++...........  .....   +...+++. +.
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~v~--~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lw  464 (781)
T 3v9f_A          388 FENGKRVAIYNKENRELLSNSVL--CSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IW  464 (781)
T ss_dssp             EETTEEEEECC-----CCCSBEE--EEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EE
T ss_pred             EECCCCeEEEccCCCCCCCcceE--EEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EE
Confidence            998765322100 0001111111  1111111122222211222223322222111111  01111   44455554 44


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                      +.+  . +-+..||..+++.......       .........+.++. ..++   |  .|..|+.++-|..||..+ .+ 
T Consensus       465 igt--~-~Gl~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~i~-~d~~---g--~lWigt~~~Gl~~~~~~~-~~-  526 (781)
T 3v9f_A          465 IGT--H-AGVFVIDLASKKVIHHYDT-------SNSQLLENFVRSIA-QDSE---G--RFWIGTFGGGVGIYTPDM-QL-  526 (781)
T ss_dssp             EEE--T-TEEEEEESSSSSCCEEECT-------TTSSCSCSCEEEEE-ECTT---C--CEEEEESSSCEEEECTTC-CE-
T ss_pred             EEE--C-CceEEEeCCCCeEEecccC-------cccccccceeEEEE-EcCC---C--CEEEEEcCCCEEEEeCCC-Ce-
Confidence            322  2 4589999887654332221       00001123455554 5554   4  366666655588888765 32 


Q ss_pred             eeeccc----cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          245 LTAMKV----HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       245 ~~~~~~----h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      ...+..    ....|.++..+++|.+.++.. +|.|..||..++++
T Consensus       527 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          527 VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY  571 (781)
T ss_dssp             EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC
T ss_pred             EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE
Confidence            222221    235789999999988655544 77658888877654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.68  E-value=0.0011  Score=57.47  Aligned_cols=218  Identities=7%  Similarity=-0.078  Sum_probs=103.3

Q ss_pred             cceeEEEEcCCCCEEEEe-cCCCeEEEEeCCC----CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870           19 ASVTDVCFHQTKPILFAG-TTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~   93 (291)
                      ..+..++|++.+..|+.+ ...+.|+.+++..    ......+....  .....|++.+. .++++++-...+.|.++++
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~--~~P~glavD~~-~g~LY~tD~~~~~I~v~d~  482 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--QAPDGLAVDWI-HSNIYWTDSVLGTVSVADT  482 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC----CCCEECCCS-SSBCEECCTTTSCEEEEBS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC--CCcceEEEEee-CCcEEEEeccCCeEEEEec
Confidence            345678998865555544 4567899998764    12111111111  12456787751 3345555556788999998


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCC--CCceeeecccCcc--cc-ccCCCCCCcccCCCCCcEEEEec
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN--EPKDCYEREVGET--VD-TDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      .......  +............+.+...... ....+  ..+..+++.....  +. ..+..-..++++|++..++++- 
T Consensus       483 dg~~~~~--l~~~~~~~P~giavDp~~g~ly-~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD-  558 (699)
T 1n7d_A          483 KGVKRKT--LFREQGSKPRAIVVDPVHGFMY-WTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD-  558 (699)
T ss_dssp             SSCCEEE--ECCCSSCCCCCEECCSSSSCCE-ECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEE-
T ss_pred             CCCceEE--EEeCCCCCcceEEEccCCCcEE-EcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEe-
Confidence            7543211  1111001111111111111111 11111  1222222222111  11 1111122299999887777644 


Q ss_pred             CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      ...+.|..+|+..... ..+..       ...  .......+. +..    +. ++++....+.|..+|..+ ++.+..+
T Consensus       559 ~~~~~I~~~d~dG~~~-~~~~~-------~~~--~~~~P~gla-vd~----~~-lywtd~~~~~V~~~d~~~-G~~~~~i  621 (699)
T 1n7d_A          559 SKLHSISSIDVNGGNR-KTILE-------DEK--RLAHPFSLA-VFE----DK-VFWTDIINEAIFSANRLT-GSDVNLL  621 (699)
T ss_dssp             TTTTEEEEECSSSSCC-EEECC-------CSS--SCSSCCCCE-EET----TE-EEEECSTTTCEEEEETTT-EEEEECC
T ss_pred             cCCCeEEEEccCCCce-EEEEe-------cCC--cCCCceEeE-EEC----CE-EEEEeCCCCeEEEEEccC-CCceEEe
Confidence            4468899999975433 22221       000  011122333 332    22 666777788999999876 5555555


Q ss_pred             cccccceeEEEe
Q 022870          249 KVHLEPVLCLSI  260 (291)
Q Consensus       249 ~~h~~~v~~~~~  260 (291)
                      ......+++|++
T Consensus       622 ~~~~~~P~~i~v  633 (699)
T 1n7d_A          622 AENLLSPEDMVL  633 (699)
T ss_dssp             CTTCSSCCCCCB
T ss_pred             ecCCCCCcEEEE
Confidence            432333444544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.61  E-value=0.026  Score=48.25  Aligned_cols=207  Identities=7%  Similarity=-0.077  Sum_probs=113.6

Q ss_pred             cceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeE-EEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCC
Q 022870           19 ASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIEN   95 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~   95 (291)
                      .....++|++.+..| .+-...+.|..++++.... ...+....  .....+++.+  .++.|+ +-...+.|.+.++..
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~--~~P~GlAvD~--~~~~ly~~d~~~~~I~v~~~dG  115 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL--LSPDGLACDW--LGEKLYWTDSETNRIEVSNLDG  115 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSC--SCEEEEEEET--TTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCC--CCcCeEEEEe--cCCEEEEEeCCCCEEEEEECCC
Confidence            346789999855444 4555678898898865432 22222221  2378999988  555555 555678999999875


Q ss_pred             CCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEE
Q 022870           96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE  175 (291)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~  175 (291)
                      .....  +.. .                                       .+..-..++++|.+..++.+--...+.|.
T Consensus       116 ~~~~~--l~~-~---------------------------------------~l~~P~~Iavdp~~g~ly~tD~g~~~~I~  153 (619)
T 3s94_A          116 SLRKV--LFW-Q---------------------------------------ELDQPRAIALDPSSGFMYWTDWGEVPKIE  153 (619)
T ss_dssp             CSCEE--EEC-S---------------------------------------SCSCCCCEEEETTTTEEEEEECSSSCEEE
T ss_pred             CCEEE--EEe-C---------------------------------------CCCCCceEEEecCCCeEEEeccCCCCEEE
Confidence            43210  000 0                                       00000116788876666654322246777


Q ss_pred             EEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccce
Q 022870          176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV  255 (291)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v  255 (291)
                      ..++...........            .-.....++ +.++.  ++ +.++-...+.|..+|+.. ........+.....
T Consensus       154 r~~~dG~~~~~l~~~------------~~~~P~Gla-ld~~~--~~-LY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P  216 (619)
T 3s94_A          154 RAGMDGSSRFIIINS------------EIYWPNGLT-LDYEE--QK-LYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHP  216 (619)
T ss_dssp             EEETTSCSCEEEECS------------SCSSEEEEE-EETTT--TE-EEEEETTTCCEEEESSSC-CEEC---------C
T ss_pred             EEECCCCceEEEEeC------------CCCCCcEEE-EEccC--CE-EEEEeCCCCeEEEecCCC-CccEEEEeCCCCCc
Confidence            777764333222221            112345565 88762  33 555556678899999874 22222222223344


Q ss_pred             eEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          256 LCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       256 ~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .+|++.++ .+.++-...+.|...|..+++....
T Consensus       217 ~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          217 FALTLFED-ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             CCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             eEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence            67888777 4556666678899999888765443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.59  E-value=0.019  Score=46.24  Aligned_cols=191  Identities=13%  Similarity=0.035  Sum_probs=105.1

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEE-EeCCCeEEEEECCCCCCCCCCccccccce
Q 022870           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (291)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  110 (291)
                      +|+.+. ...|+..++........+.. .  ..+..++|.+  .+..|+. -...+.|+.+++............+... 
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-~--~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~-  157 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPN-L--RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-  157 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECS-C--SCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSS-
T ss_pred             eeEEec-cceeEEEccCCcceeEeccc-c--CcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC-
Confidence            444433 36899999876654444332 2  3488999998  5555554 4456788888886532100000000000 


Q ss_pred             EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecc
Q 022870          111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (291)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~  190 (291)
                              ...+.                             .+++.+.+..++. +-...+.|.+.|+........+..
T Consensus       158 --------~~~p~-----------------------------glavD~~~~~lY~-~d~~~~~I~~~~~~g~~~~~l~~~  199 (400)
T 3p5b_L          158 --------IQAPD-----------------------------GLAVDWIHSNIYW-TDSVLGTVSVADTKGVKRKTLFRE  199 (400)
T ss_dssp             --------CSCEE-----------------------------EEEEETTTTEEEE-EETTTTEEEEECTTTCSEEEEEEC
T ss_pred             --------CCCcc-----------------------------cEEEEecCCceEE-EECCCCeEEEEeCCCCceEEEEeC
Confidence                    00000                             0556665556665 344468899999876544333331


Q ss_pred             cccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee-cCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeE-
Q 022870          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-  268 (291)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-  268 (291)
                             .     ......++ +.|..  |. ++++- +..+.|+..++.. ......+...-...+.|++++++..|. 
T Consensus       200 -------~-----~~~P~~ia-vdp~~--g~-ly~td~~~~~~I~~~~~dG-~~~~~~~~~~l~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          200 -------N-----GSKPRAIV-VDPVH--GF-MYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             -------S-----SCCEEEEE-EETTT--TE-EEEEECSSSCCEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             -------C-----CCCcceEE-Eeccc--Ce-EEEEeCCCCCEEEEEeCCC-CccEEEEECCCCceEEEEEEeCCCEEEE
Confidence                   1     11245565 88762  43 33343 3357899999874 222222233335789999997665554 


Q ss_pred             EecCCCeEEEEEcCCC
Q 022870          269 SGGADQKIVLYNLDHS  284 (291)
Q Consensus       269 s~s~dg~i~vw~~~~~  284 (291)
                      +-+..+.|...|++..
T Consensus       263 aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGG  278 (400)
T ss_dssp             EETTTTEEEEEETTSC
T ss_pred             EECCCCEEEEEeCCCC
Confidence            4455678999998754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.56  E-value=0.017  Score=44.83  Aligned_cols=189  Identities=14%  Similarity=0.077  Sum_probs=104.7

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCCCCCCCccccccce
Q 022870           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTNS  110 (291)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  110 (291)
                      +|+.+.. ..|+..|+...+....+...   .....++|.+  .++.|+ +-..++.|..+++............+..  
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~---~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~--   74 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPNL---RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--   74 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECSC---SSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECS--
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcCC---CceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC--
Confidence            3444333 46899998877655544432   3378999998  555555 5455688999988752100000000000  


Q ss_pred             EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecc
Q 022870          111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ  190 (291)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~  190 (291)
                             ....+                             ..+++++.+..++++ -...+.|.++|+........+..
T Consensus        75 -------~~~~p-----------------------------~glavd~~~~~ly~~-d~~~~~I~~~~~~g~~~~~~~~~  117 (316)
T 1ijq_A           75 -------DIQAP-----------------------------DGLAVDWIHSNIYWT-DSVLGTVSVADTKGVKRKTLFRE  117 (316)
T ss_dssp             -------SCSCC-----------------------------CEEEEETTTTEEEEE-ETTTTEEEEEETTSSSEEEEEEC
T ss_pred             -------CCCCc-----------------------------CEEEEeecCCeEEEE-ECCCCEEEEEeCCCCceEEEEEC
Confidence                   00000                             005677666666653 34468899999875443322221


Q ss_pred             cccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC-CcEEEEEccCCCCceeec-cccccceeEEEeecCCCee-
Q 022870          191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESCNGG-  267 (291)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d-g~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l-  267 (291)
                              .    ......++ +.|.+  |. ++++.... +.|..+++.  +.....+ ...-...+.|++++++..| 
T Consensus       118 --------~----~~~P~~ia-vdp~~--g~-ly~~d~~~~~~I~~~~~d--G~~~~~~~~~~~~~P~gla~d~~~~~lY  179 (316)
T 1ijq_A          118 --------N----GSKPRAIV-VDPVH--GF-MYWTDWGTPAKIKKGGLN--GVDIYSLVTENIQWPNGITLDLLSGRLY  179 (316)
T ss_dssp             --------T----TCCEEEEE-EETTT--TE-EEEEECSSSCEEEEEETT--SCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             --------C----CCCcceEE-eCCCC--CE-EEEEccCCCCeEEEEcCC--CCCeEEEEECCCCCceEEEEeccCCEEE
Confidence                    1    12345565 88752  43 44444333 789999886  3333333 2223567899999865555 


Q ss_pred             EEecCCCeEEEEEcCC
Q 022870          268 ISGGADQKIVLYNLDH  283 (291)
Q Consensus       268 ~s~s~dg~i~vw~~~~  283 (291)
                      ++-+..+.|..+|++.
T Consensus       180 ~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          180 WVDSKLHSISSIDVNG  195 (316)
T ss_dssp             EEETTTTEEEEEETTS
T ss_pred             EEECCCCeEEEEecCC
Confidence            4555667999999875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.52  E-value=0.0077  Score=46.61  Aligned_cols=101  Identities=10%  Similarity=0.053  Sum_probs=63.9

Q ss_pred             cCeEEEEeCC---CcceeeEecccccCCCCCCCCC-------cceeeeeEEEecCCCCCCceEEEeecCC-CcEEEEEcc
Q 022870          171 LSEVEIWDLN---TAERCTRLHQNSCGGSPNFSSK-------GRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIR  239 (291)
Q Consensus       171 d~~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~g~~~l~~g~~d-g~i~vwd~~  239 (291)
                      +..+..||+.   +++.+......      .....       ....+..+. ..++   |. ..++++.. +.|...+..
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~------~~~~~~~~~~g~~~~~~nDva-vD~~---Gn-aYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFE------KVQDEFEKKAGKRPFGVVQSA-QDRD---GN-SYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESH------HHHHHHHHHHSSCCEEEEEEE-ECTT---SC-EEEEEEESSCEEEEECTT
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCc------cccccccccccccccCCceeE-ECCC---CC-EEEeCCCCCCeEEEEeCC
Confidence            5789999999   77766544311      00000       123466676 7777   44 66666666 777777665


Q ss_pred             CCCCceeeccc------cccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          240 NPGIPLTAMKV------HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       240 ~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                        ++.+..+..      .....+.|+++|++..|+.....|.+..+|+++.
T Consensus       168 --G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          168 --GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             --SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             --CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence              333332211      1123679999999988887766999999998743

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.52  E-value=0.0065  Score=52.44  Aligned_cols=74  Identities=12%  Similarity=0.135  Sum_probs=49.3

Q ss_pred             eEEEEcCCCCEEEEecC-CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe-CC-----CeEEEEECC
Q 022870           22 TDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RD-----GTVKCWDIE   94 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d-----g~i~iwd~~   94 (291)
                      .++++..++.+++.|+. +..+.+||..+.+-...-..+.. ..-.+++..+  ++..++.|+ .+     ..+.+||..
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcc-ccccceEEec--CCeEEEEeCcccCCcccccceEeCCC
Confidence            34677789999999984 56899999887654432222211 1123555666  778888888 34     579999998


Q ss_pred             CCCC
Q 022870           95 NGGL   98 (291)
Q Consensus        95 ~~~~   98 (291)
                      +.+.
T Consensus       323 t~~W  326 (656)
T 1k3i_A          323 SKTW  326 (656)
T ss_dssp             TTEE
T ss_pred             CCcc
Confidence            7653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.41  E-value=0.022  Score=44.52  Aligned_cols=110  Identities=11%  Similarity=0.201  Sum_probs=65.7

Q ss_pred             EEEEecCC--cCeEEEEeC--CCcceeeEecccccCCCCCCC-CCcceeeeeEEEe-cCCCCCCceEEEeecCCCcEEEE
Q 022870          163 YMAVAGEQ--LSEVEIWDL--NTAERCTRLHQNSCGGSPNFS-SKGRGMCMAVQAY-LPSKSQGFVNVLAGYEDGSILVW  236 (291)
Q Consensus       163 ~~~~~g~~--d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~p~~~~g~~~l~~g~~dg~i~vw  236 (291)
                      +++++...  +++|.+|++  .++ .+..+...      .+. ......++.++.| +|.  .++.++++...+|.+..|
T Consensus        88 la~as~R~~~~n~l~vf~iDp~~~-~l~~i~~~------~~pv~t~~~~pyGlcly~~~~--~g~~yafV~~k~G~~~q~  158 (355)
T 3amr_A           88 IAAASNRSEGKNTIEIYAIDGKNG-TLQSMTDP------DHPIATAINEVYGFTLYHSQK--TGKYYAMVTGKEGEFEQY  158 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEECTTTC-CEEECSCT------TSCEECCCSSCCCEEEEECTT--TCCEEEEEECSSSEEEEE
T ss_pred             EEEEeCCCCCCCeEEEEEECCCCC-ceeecccc------ccCcCCCCCCeeEEEEEecCC--CCcEEEEEECCCCeEEEE
Confidence            44445554  588999976  333 34444210      000 0000223334313 453  254478888889999999


Q ss_pred             EccCC------CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          237 DIRNP------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       237 d~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      ++...      .+.++++.. .+.+-.+..++....|..+-+|.-|..++.+
T Consensus       159 ~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          159 ELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             EEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             EEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence            98421      245566664 4578899999888889999888666666644

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.40  E-value=0.029  Score=43.63  Aligned_cols=181  Identities=14%  Similarity=0.029  Sum_probs=101.5

Q ss_pred             CCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCCCCCCCccccccceEEEEE
Q 022870           39 GGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK  115 (291)
Q Consensus        39 dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
                      ...|+..++....  ....+...   .....+.|.+  .+..|+ +-...+.|..+++....... .+..        ..
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~---~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~--------~~   77 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGL---EDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQ-NVVV--------SG   77 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEE---EEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCC-EEEE--------EC
T ss_pred             cCeEEEEECCCCceEEEEEecCC---CccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceE-EEEc--------CC
Confidence            4679999987653  22222222   2367999998  445444 55567889999887653211 0000        00


Q ss_pred             eecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCC
Q 022870          116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG  195 (291)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~  195 (291)
                         ...+.                             .+++.+.+..++.+ -...+.|.++++........+..     
T Consensus        78 ---l~~p~-----------------------------glavd~~~g~ly~~-d~~~~~I~~~~~dG~~~~~l~~~-----  119 (318)
T 3sov_A           78 ---LLSPD-----------------------------GLACDWLGEKLYWT-DSETNRIEVSNLDGSLRKVLFWQ-----  119 (318)
T ss_dssp             ---CSCCC-----------------------------EEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECS-----
T ss_pred             ---CCCcc-----------------------------EEEEEcCCCeEEEE-ECCCCEEEEEECCCCcEEEEEeC-----
Confidence               00000                             05566666666653 34467899999875433222221     


Q ss_pred             CCCCCCCcceeeeeEEEecCCCCCCceEEEee-cCCCcEEEEEccCCCCceeec-cccccceeEEEeecCCCee-EEecC
Q 022870          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESCNGG-ISGGA  272 (291)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l-~s~s~  272 (291)
                        .     ......++ +.|.+  |. ++++- +..+.|+..++..  .....+ ...-...+.|++++++..| ++=+.
T Consensus       120 --~-----~~~P~gia-vdp~~--g~-ly~td~~~~~~I~r~~~dG--~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~  186 (318)
T 3sov_A          120 --E-----LDQPRAIA-LDPSS--GF-MYWTDWGEVPKIERAGMDG--SSRFIIINSEIYWPNGLTLDYEEQKLYWADAK  186 (318)
T ss_dssp             --S-----CSSEEEEE-EEGGG--TE-EEEEECSSSCEEEEEETTS--CSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             --C-----CCCccEEE-EeCCC--CE-EEEEecCCCCEEEEEEcCC--CCeEEEEECCCCCccEEEEeccCCEEEEEECC
Confidence              1     12234555 77752  43 33333 2468899998873  333332 2223467899999855544 55556


Q ss_pred             CCeEEEEEcCCC
Q 022870          273 DQKIVLYNLDHS  284 (291)
Q Consensus       273 dg~i~vw~~~~~  284 (291)
                      .+.|..++++..
T Consensus       187 ~~~I~~~d~dG~  198 (318)
T 3sov_A          187 LNFIHKSNLDGT  198 (318)
T ss_dssp             TTEEEEEETTSC
T ss_pred             CCEEEEEcCCCC
Confidence            789999998753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.26  E-value=0.06  Score=44.41  Aligned_cols=224  Identities=10%  Similarity=0.006  Sum_probs=113.5

Q ss_pred             ceeEEEE-------cCCCCEEEEecCCC-------eEEEEeCCC-CeEE-----EEEeeecCCcceEEEEEeecCCCCe-
Q 022870           20 SVTDVCF-------HQTKPILFAGTTGG-------ELRIWDTVQ-HRTV-----SSSWVHSAAHGIVSVATGPSIGLNK-   78 (291)
Q Consensus        20 ~v~~l~~-------~~~~~~l~s~~~dg-------~v~iwd~~~-~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~-   78 (291)
                      ....++|       +++|..|+.+...+       .|.+.+... +...     ..+....+   ...++++|  ++.. 
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~---p~giavdp--~~g~L  261 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ---CNGATIHP--INGEL  261 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC---CCCEEECT--TTCCE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC---ceEEEEcC--CCCeE
Confidence            5788999       99998666655443       266665333 2221     22322222   46778888  5454 


Q ss_pred             EEEEeCCCeEEEEECC-------CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCC
Q 022870           79 VISQGRDGTVKCWDIE-------NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD  151 (291)
Q Consensus        79 l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (291)
                      +++-..++.|..+|+.       ++.. ..+............ +....                             ..
T Consensus       262 Yvtd~~~g~V~r~d~~~~~~~~~tg~~-~tp~~~~~~g~~~~l-~~~~~-----------------------------~~  310 (496)
T 3kya_A          262 YFNSYEKGQVFRLDLVDYFKTIKNGGS-WDPIVKNNPNTFKQL-FTIAD-----------------------------PS  310 (496)
T ss_dssp             EEEETTTTEEEEECHHHHHHHHHTTCC-CCCBGGGCTTTEEEE-EECSS-----------------------------SS
T ss_pred             EEEECCCCEEEEEecccccccccCcee-eccccccccccccee-EecCC-----------------------------CC
Confidence            4456677889999997       4432 111111000000000 00000                             00


Q ss_pred             C--CcccCCCCCcEEEEecCCcCeEEEEeCC--Ccce--eeEecccccCCCCCCCCC-----cceeee-eEEEec-CC--
Q 022870          152 S--KDDVPAEGPKYMAVAGEQLSEVEIWDLN--TAER--CTRLHQNSCGGSPNFSSK-----GRGMCM-AVQAYL-PS--  216 (291)
Q Consensus       152 ~--~~~~~~~~~~~~~~~g~~d~~i~~wd~~--~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~-p~--  216 (291)
                      .  .++|+|+|+.+++ +-.....|+.+|..  .+..  ...+....  ...++...     .-.... .+. .. |+  
T Consensus       311 ~p~~ia~~p~G~~lYv-aD~~~h~I~kid~dg~~~~~~~~~~~aG~~--g~~G~~DG~~~~a~f~~P~~gv~-vd~~~~~  386 (496)
T 3kya_A          311 WEFQIFIHPTGKYAYF-GVINNHYFMRSDYDEIKKEFITPYNFVGGY--KQSGYRDDVGTEARMNNPCQGVF-VKNPDYT  386 (496)
T ss_dssp             CCEEEEECTTSSEEEE-EETTTTEEEEEEEETTTTEECCCEEEEEBT--TBCCCBCCBGGGCBCSSEEEEEE-EECTTCC
T ss_pred             CceEEEEcCCCCEEEE-EeCCCCEEEEEecCCCcceecccEEecCCC--CCCcccCCcccccccCCCeEEEE-Ecccccc
Confidence            0  0779999986555 34446889886653  3321  11221000  00011110     001122 221 32 10  


Q ss_pred             -CCCCceEEEeecCCCcEEEEEccCCCCceeecccc------------------------ccceeEEEeecC-CCeeEEe
Q 022870          217 -KSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH------------------------LEPVLCLSIDES-CNGGISG  270 (291)
Q Consensus       217 -~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h------------------------~~~v~~~~~~~~-~~~l~s~  270 (291)
                       ..+|. ++++=..+..|+.++. + +. +.++.+.                        -....+|+++++ +.++++=
T Consensus       387 ~~~~g~-lyVaD~~N~rIr~i~~-~-G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD  462 (496)
T 3kya_A          387 GEEEYD-FYFVDRLNFCVRKVTP-E-GI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHD  462 (496)
T ss_dssp             SSCCEE-EEEEEGGGTEEEEECT-T-CB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEE
T ss_pred             ccCCCe-EEEEECCCCEEEEEeC-C-CC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEe
Confidence             01244 5566667888999983 3 42 3333221                        124678999996 8877777


Q ss_pred             cCCCeEEEEEcCCCcee
Q 022870          271 GADQKIVLYNLDHSTVS  287 (291)
Q Consensus       271 s~dg~i~vw~~~~~~~~  287 (291)
                      ..+..||.++++.....
T Consensus       463 ~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          463 QVGHTIRTISMEQEENV  479 (496)
T ss_dssp             TTTTEEEEEEECCCC--
T ss_pred             CCCCEEEEEECCCCccc
Confidence            78899999999876654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.06  E-value=0.066  Score=41.22  Aligned_cols=165  Identities=12%  Similarity=-0.004  Sum_probs=88.7

Q ss_pred             CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccC
Q 022870           50 HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA  129 (291)
Q Consensus        50 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (291)
                      .+.+..+...   .....++|.+  +++++++-..++.|..||...... .  ......  ....               
T Consensus        22 ~~~~~~~p~~---~~pegia~~~--~g~lyv~d~~~~~I~~~d~~g~~~-~--~~~~~~--~p~g---------------   76 (306)
T 2p4o_A           22 AKIITSFPVN---TFLENLASAP--DGTIFVTNHEVGEIVSITPDGNQQ-I--HATVEG--KVSG---------------   76 (306)
T ss_dssp             EEEEEEECTT---CCEEEEEECT--TSCEEEEETTTTEEEEECTTCCEE-E--EEECSS--EEEE---------------
T ss_pred             ceEeEeCCCC---CCcceEEECC--CCCEEEEeCCCCeEEEECCCCceE-E--EEeCCC--Ccee---------------
Confidence            3444455432   2368999999  877666666788999998765311 0  001100  0000               


Q ss_pred             CCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc-CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeee
Q 022870          130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL-SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM  208 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (291)
                                              ++++++|+ ++++....+ ..|..+|..+++.......       ..    .....
T Consensus        77 ------------------------ia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~-------~~----~~~~~  120 (306)
T 2p4o_A           77 ------------------------LAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTL-------PD----AIFLN  120 (306)
T ss_dssp             ------------------------EEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEEC-------TT----CSCEE
T ss_pred             ------------------------EEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeC-------CC----ccccC
Confidence                                    56888887 444333222 3577788777765433221       00    11112


Q ss_pred             eEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC-cee---------eccccccceeEEEeecCCCee-EEecCCCeEE
Q 022870          209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-PLT---------AMKVHLEPVLCLSIDESCNGG-ISGGADQKIV  277 (291)
Q Consensus       209 ~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-~~~---------~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~  277 (291)
                      .+. ..+.   +. .+++-..++.|+++|..+ +. .+.         .....-...+.|  ++++..| ++-...+.|.
T Consensus       121 g~~-~~~~---~~-~~v~d~~~g~i~~~d~~~-~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~  192 (306)
T 2p4o_A          121 GIT-PLSD---TQ-YLTADSYRGAIWLIDVVQ-PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLL  192 (306)
T ss_dssp             EEE-ESSS---SE-EEEEETTTTEEEEEETTT-TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEE
T ss_pred             ccc-ccCC---Cc-EEEEECCCCeEEEEeCCC-CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEE
Confidence            222 3332   32 455555688999999764 21 111         001111234566  7777554 5556678999


Q ss_pred             EEEcCC
Q 022870          278 LYNLDH  283 (291)
Q Consensus       278 vw~~~~  283 (291)
                      +++++.
T Consensus       193 ~~~~~~  198 (306)
T 2p4o_A          193 RIPVDS  198 (306)
T ss_dssp             EEEBCT
T ss_pred             EEEeCC
Confidence            999875

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.03  E-value=0.091  Score=42.35  Aligned_cols=248  Identities=11%  Similarity=0.094  Sum_probs=137.0

Q ss_pred             EEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCc
Q 022870           24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS  103 (291)
Q Consensus        24 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  103 (291)
                      .-.+|..+.+|.-. ..++.|+|+++.+.++.....   ++|.-=.|-.  + +.|+-... ..|+-|+++...... .+
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis--~-~~l~lVT~-taVyHWsi~~~s~P~-kv  141 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS--L-NTVALVTD-NAVYHWSMEGESQPV-KM  141 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEE--T-TEEEEECS-SEEEEEESSSSCCCE-EE
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecC--C-CeEEEEcC-CeeEEecccCCCCch-hh
Confidence            34567666666554 578999999999988887765   3477777776  4 66665554 589999997633211 01


Q ss_pred             cc----cccceEEEEEeecccCccceeccC---C-CCceeeecccCccccccCCCCCC--cccCCCC----CcEEEEe--
Q 022870          104 LT----IKTNSYHFCKLSLVKEPYANAKQA---N-EPKDCYEREVGETVDTDSLCDSK--DDVPAEG----PKYMAVA--  167 (291)
Q Consensus       104 ~~----~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~--  167 (291)
                      +.    +.......-..+............   + ..+.+--....+.....+.+|..  ..+-.+|    ..+++.+  
T Consensus       142 FdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r  221 (494)
T 1bpo_A          142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR  221 (494)
T ss_dssp             EECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred             eecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence            11    111222222222222222211111   1 01111122233344445556654  2222222    2333322  


Q ss_pred             cCCcCeEEEEeCCCc-ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          168 GEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       168 g~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      ....+.+++-++... .....+......-+ -..+.......++. .++..  |  .+..-+.-|.|++||+.+ +.++.
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~-fppe~~~DFPvamq-vs~ky--g--viyviTK~G~i~lyDleT-gt~i~  294 (494)
T 1bpo_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVF-FPPEAQNDFPVAMQ-ISEKH--D--VVFLITKYGYIHLYDLET-GTCIY  294 (494)
T ss_dssp             STTCCEEEEEECSCCCTTCCCCCCEEEECC-CCTTSTTCCEEEEE-EETTT--T--EEEEEETTSEEEEEETTT-CCEEE
T ss_pred             cCCCcEEEEEEcCCCccCCCCccceeeeee-CCcccccCceeEEE-ecccC--C--EEEEEecCceEEEEeccc-ceeee
Confidence            112378888888543 00001100000000 11122456677777 77653  3  788888999999999999 88888


Q ss_pred             eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      .-+-..++|..-+-+.+..-++....+|.|.--.++...++
T Consensus       295 ~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          295 MNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             eecccCCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence            77776778877777666556777778888888777776554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.94  E-value=0.074  Score=39.75  Aligned_cols=166  Identities=11%  Similarity=0.083  Sum_probs=87.4

Q ss_pred             ceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCCCCCCCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccC
Q 022870           64 GIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVG  141 (291)
Q Consensus        64 ~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (291)
                      .+..++|+|  +++.|+ +...++.|...|.. ++...  ...+.. .....                            
T Consensus        28 ~lSGla~~~--~~~~L~aV~d~~~~I~~ld~~-g~v~~--~i~l~g~~D~EG----------------------------   74 (255)
T 3qqz_A           28 NISSLTWSA--QSNTLFSTINKPAAIVEMTTN-GDLIR--TIPLDFVKDLET----------------------------   74 (255)
T ss_dssp             CEEEEEEET--TTTEEEEEEETTEEEEEEETT-CCEEE--EEECSSCSSEEE----------------------------
T ss_pred             CcceeEEeC--CCCEEEEEECCCCeEEEEeCC-CCEEE--EEecCCCCChHH----------------------------
Confidence            499999999  666555 56778889888987 54322  111110 00000                            


Q ss_pred             ccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCc
Q 022870          142 ETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (291)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~  221 (291)
                                  +++.+++. +++ +...++.+.++++.....+......... . + ..+.+.-.-.++ |.|.   +.
T Consensus        75 ------------Ia~~~~g~-~~v-s~E~~~~l~~~~v~~~~~i~~~~~~~~~-~-~-~~~~N~g~EGLA-~d~~---~~  133 (255)
T 3qqz_A           75 ------------IEYIGDNQ-FVI-SDERDYAIYVISLTPNSEVKILKKIKIP-L-Q-ESPTNCGFEGLA-YSRQ---DH  133 (255)
T ss_dssp             ------------EEECSTTE-EEE-EETTTTEEEEEEECTTCCEEEEEEEECC-C-S-SCCCSSCCEEEE-EETT---TT
T ss_pred             ------------eEEeCCCE-EEE-EECCCCcEEEEEcCCCCeeeeeeeeccc-c-c-cccccCCcceEE-EeCC---CC
Confidence                        44666664 333 4555788999987655432211111000 0 0 011222345565 9987   32


Q ss_pred             eEEEeecCCCcEEEEEccC--CCCceeecc-------ccccceeEEEeecCC-CeeEEecCCCeEEEEEcCCC
Q 022870          222 VNVLAGYEDGSILVWDIRN--PGIPLTAMK-------VHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       222 ~~l~~g~~dg~i~vwd~~~--~~~~~~~~~-------~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vw~~~~~  284 (291)
                       .|+++.+.....+|.++.  ....+..+.       .+...+.+++++|.. ++++.....+.+.++|.+..
T Consensus       134 -~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~  205 (255)
T 3qqz_A          134 -TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE  205 (255)
T ss_dssp             -EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred             -EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC
Confidence             455555544444554431  011122211       123457899998854 45566666788888887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.0089  Score=46.69  Aligned_cols=66  Identities=15%  Similarity=0.171  Sum_probs=43.4

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEE--eCCCeEEEEECCCCC
Q 022870           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ--GRDGTVKCWDIENGG   97 (291)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~   97 (291)
                      .+++.++.||.|.-.|.++|+.+.+++.... .++....-.....+..++.+  ..||.|..+|..++.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~-~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~   78 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF-QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL   78 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGS-CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCcc-CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc
Confidence            3788899999999999999999998876511 12333221110012234433  589999999987763

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.88  E-value=0.041  Score=44.15  Aligned_cols=113  Identities=12%  Similarity=0.116  Sum_probs=71.9

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcc------------eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCc
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE------------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF  221 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~  221 (291)
                      +..+|+|..+ |..|.  ..|.|-.+..+.            ..+.+...      .........+..+. |+|.+..+.
T Consensus        71 lvlSpsG~lL-Al~g~--~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~------~~~~~~~s~I~qVl-WHPl~~~ds  140 (452)
T 3pbp_A           71 VISSTSGDLL-CLFND--NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID------EEEVGPKSSIKKVL-FHPKSYRDS  140 (452)
T ss_dssp             EEECTTSSEE-EEECS--SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG------GCC--CCCCEEEEE-ECTTBGGGC
T ss_pred             EEECCCCCEE-EEecC--CeEEEEEecCccccCcccccccccceeEEEcC------CcccCCCCceeEEE-eccccCCCC
Confidence            5588999654 44564  689998887321            11222211      00011245677777 999877666


Q ss_pred             eEEEeecCCCcEEEEEccC-CCCceeecc---------ccccceeEEEeecCCCeeEE--ecCCCeEEE
Q 022870          222 VNVLAGYEDGSILVWDIRN-PGIPLTAMK---------VHLEPVLCLSIDESCNGGIS--GGADQKIVL  278 (291)
Q Consensus       222 ~~l~~g~~dg~i~vwd~~~-~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~s--~s~dg~i~v  278 (291)
                       .|++-..|+.|++||+.. ..+|. .+.         .....|.+++|.+++..|..  .+..|.|+-
T Consensus       141 -~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          141 -CIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             -EEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             -eEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence             899999999999999985 12333 222         22357889999888777766  447777754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.80  E-value=0.15  Score=41.14  Aligned_cols=222  Identities=11%  Similarity=0.054  Sum_probs=123.6

Q ss_pred             CCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEee
Q 022870           38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (291)
Q Consensus        38 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (291)
                      .+.+|.|-|+.+++.+..-...     --+.-.+|  ..+.++.-. ..++.++|+++.....  ...+.. ......+ 
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi~-----AdsAIMnP--~~~iiALra-g~~lQiFnle~K~klk--s~~~~e-~VvfWkW-  113 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMK--AHTMTD-DVTFWKW-  113 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEECC-----CSEEEECS--SSSCEEEEE-TTEEEEEETTTTEEEE--EEECSS-CCCEEEE-
T ss_pred             CCCeEEEEECCCCCcceecccc-----cceeeeCC--CCcEEEEec-CCeEEEEchHHhhhhc--ceecCC-CceEEEe-
Confidence            3447888888876554322211     12445678  555665444 6799999999876443  122221 1111111 


Q ss_pred             cccCccceeccCCCCceeeecccCccccccCCCCCC--------cccCCCCCcEEEEec-----CCcCeEEEEeCCCcce
Q 022870          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--------DDVPAEGPKYMAVAG-----EQLSEVEIWDLNTAER  184 (291)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g-----~~d~~i~~wd~~~~~~  184 (291)
                        .++...+......+..|++.....+...+..|..        -..+++.+.++++.-     .-.|.+.+|..+.+ .
T Consensus       114 --is~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~  190 (494)
T 1bpo_A          114 --ISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-V  190 (494)
T ss_dssp             --EETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-C
T ss_pred             --cCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-c
Confidence              1233445566667777777654444333333333        344677766655321     13577899988764 3


Q ss_pred             eeEecccccCCCCCCCCCcceeeeeEEEecCCCCC-CceEEEeecC---CCcEEEEEccCC--CCce------eecc---
Q 022870          185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ-GFVNVLAGYE---DGSILVWDIRNP--GIPL------TAMK---  249 (291)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-g~~~l~~g~~---dg~i~vwd~~~~--~~~~------~~~~---  249 (291)
                      -+.++        ||..    .-.   .+..++.. ....++.+..   .++++|.++...  +.+.      ..+.   
T Consensus       191 sQ~ie--------Ghaa----~F~---~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe  255 (494)
T 1bpo_A          191 SQPIE--------GHAA----SFA---QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE  255 (494)
T ss_dssp             EEEEC--------CSEE----EEE---EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred             cchhe--------eeee----eeE---EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc
Confidence            34454        5522    111   12222111 1113333333   378999998642  1111      1111   


Q ss_pred             ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .-.+-..++..++.-..+.....-|.|+++|++++.+++.
T Consensus       256 ~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          256 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             STTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence            1234567888898888888889999999999999998753

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.78  E-value=0.12  Score=39.61  Aligned_cols=61  Identities=18%  Similarity=0.048  Sum_probs=33.4

Q ss_pred             EEEeecCC-----CcEEEEEccCCCCce--eeccccccceeEEEeecCCCeeEEecCC-----CeEEEEEcCCCce
Q 022870          223 NVLAGYED-----GSILVWDIRNPGIPL--TAMKVHLEPVLCLSIDESCNGGISGGAD-----QKIVLYNLDHSTV  286 (291)
Q Consensus       223 ~l~~g~~d-----g~i~vwd~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----g~i~vw~~~~~~~  286 (291)
                      +++.|+.+     ..+.+||+.+ .+-.  ..+...... .+++.. ++++++.|+.+     ..+.+||+++.+-
T Consensus       209 i~v~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          209 IYVVGGFDGTAHLSSVEAYNIRT-DSWTTVTSMTTPRCY-VGATVL-RGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTT-TEEEEECCCSSCCBS-CEEEEE-TTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             EEEEeCCCCCcccceEEEEeCCC-CcEEECCCCCCcccc-eeEEEE-CCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence            66666653     4689999986 3211  111111111 122222 55677777765     4688899887653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.75  E-value=0.12  Score=39.52  Aligned_cols=65  Identities=15%  Similarity=0.179  Sum_probs=34.7

Q ss_pred             CCCEEEEecCC-----CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC-----eEEEEECCCCC
Q 022870           29 TKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----TVKCWDIENGG   97 (291)
Q Consensus        29 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~   97 (291)
                      ++.+++.|+.+     ..+.+||..+.+-...-....... -.+++..   ++..++.|+.++     .+.+||+.+.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRS-TLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNE  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcccc-ceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence            55567777754     358889987765333211111111 1222222   446667777553     46777877654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.74  E-value=0.13  Score=39.54  Aligned_cols=65  Identities=11%  Similarity=0.163  Sum_probs=36.4

Q ss_pred             CCCEEEEecCC----CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC------CeEEEEECCCCC
Q 022870           29 TKPILFAGTTG----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIENGG   97 (291)
Q Consensus        29 ~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~   97 (291)
                      ++.+++.|+.+    ..+.+||..+.+-...-....... -.+++..   ++..++.|+.+      ..+.+||..+.+
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD-SLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB-SCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc-ceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence            55577777754    678889988775433222111111 1122222   44666777765      457788887664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.52  E-value=0.2  Score=39.01  Aligned_cols=108  Identities=12%  Similarity=0.085  Sum_probs=55.3

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                      +++.+++. +++ .+. +|.+++.+...++.-..+..       .. ......+.++. |.|+   +. +++++ .+|.|
T Consensus       210 ~~~~~~g~-~~~-~~~-~G~~~~s~~D~G~tW~~~~~-------~~-~~~~~~~~~v~-~~~~---~~-~~~~g-~~g~i  272 (327)
T 2xbg_A          210 MGFTPDGR-LWM-IVN-GGKIAFSDPDNSENWGELLS-------PL-RRNSVGFLDLA-YRTP---NE-VWLAG-GAGAL  272 (327)
T ss_dssp             EEECTTSC-EEE-EET-TTEEEEEETTEEEEECCCBC-------TT-SSCCSCEEEEE-ESSS---SC-EEEEE-STTCE
T ss_pred             eEECCCCC-EEE-EeC-CceEEEecCCCCCeeEeccC-------Cc-ccCCcceEEEE-ecCC---CE-EEEEe-CCCeE
Confidence            34667765 443 333 57777764332333222221       00 00112355665 7765   33 44444 46766


Q ss_pred             EEEEccCCCCceeecc---ccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          234 LVWDIRNPGIPLTAMK---VHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                       ++.... ++.-..+.   .....+.++.|.+++. ++.++.+|.|.-++-
T Consensus       273 -~~S~Dg-G~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          273 -LCSQDG-GQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             -EEESST-TSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             -EEeCCC-CcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence             344443 44333333   2245678899976555 566667898776653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.17  E-value=0.35  Score=38.13  Aligned_cols=49  Identities=8%  Similarity=-0.015  Sum_probs=32.0

Q ss_pred             CcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEE-ecCCCeEEEEEcCC
Q 022870          231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS-GGADQKIVLYNLDH  283 (291)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~dg~i~vw~~~~  283 (291)
                      |.|+-+|.   ++ +..+...-...+.++|+|+++.|.. -+..+.|..|+++.
T Consensus       203 g~vyr~d~---~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          203 SFVTYYSP---ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEEEECT---TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cEEEEEEC---Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            45555554   22 2233333456799999999977654 45678999999874

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.10  E-value=0.58  Score=40.12  Aligned_cols=206  Identities=9%  Similarity=-0.042  Sum_probs=112.8

Q ss_pred             cceeEEEEcCCCCE-EEEecCCCeEEEEeCCCCeEEEEEeee----cCCcceEEEEEeecCCCCeE-EEEeCCCeEEEEE
Q 022870           19 ASVTDVCFHQTKPI-LFAGTTGGELRIWDTVQHRTVSSSWVH----SAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWD   92 (291)
Q Consensus        19 ~~v~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd   92 (291)
                      ..+.+++|.+.... +.+=...+.|+.++.........+...    .....+..+++..  .++.| ++-+..+.|.+.+
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~--~~~nLY~td~~~~~I~v~~  417 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDI--YSRYIYWTCEATNVINVTR  417 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEET--TTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeec--cCCeEEEEcCCCCEEEEEE
Confidence            45788999985444 455556788988887643322223220    0112378999987  55544 4666778898888


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS  172 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  172 (291)
                      +..... . .+..........                                        ++++|....++.+-.....
T Consensus       418 ~~G~~~-~-~l~~~~l~~Pr~----------------------------------------iavdp~~g~ly~tD~g~~~  455 (628)
T 4a0p_A          418 LDGRSV-G-VVLKGEQDRPRA----------------------------------------VVVNPEKGYMYFTNLQERS  455 (628)
T ss_dssp             TTSCEE-E-EEEECTTCCEEE----------------------------------------EEEETTTTEEEEEEEETTE
T ss_pred             CCCCeE-E-EEEeCCCCceee----------------------------------------EEEecCCCeEEEeecCCCC
Confidence            864311 0 000000000000                                        5677755555553322222


Q ss_pred             -eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc-c
Q 022870          173 -EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-V  250 (291)
Q Consensus       173 -~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~  250 (291)
                       .|...++...........        .    -.....++ +.+..  ++ +.++-+..+.|...|+..  .....+. .
T Consensus       456 ~~I~r~~~dG~~~~~l~~~--------~----l~~P~gla-~D~~~--~~-LYw~D~~~~~I~~~~~dG--~~r~~~~~~  517 (628)
T 4a0p_A          456 PKIERAALDGTEREVLFFS--------G----LSKPIALA-LDSRL--GK-LFWADSDLRRIESSDLSG--ANRIVLEDS  517 (628)
T ss_dssp             EEEEEEETTSCSCEEEECS--------S----CSCEEEEE-EETTT--TE-EEEEETTTTEEEEEETTS--CSCEEEECS
T ss_pred             CeEEEEeCCCCCcEEEEec--------c----CCCccEEE-EeCCC--CE-EEEEeCCCCEEEEEeCCC--CceEEEEcC
Confidence             677777764333222221        1    12345555 77652  32 444555678999999863  3333333 3


Q ss_pred             cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       251 h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      ......+|+... +.++++=...+.|...|..+++..
T Consensus       518 ~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~  553 (628)
T 4a0p_A          518 NILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGR  553 (628)
T ss_dssp             SCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCC
T ss_pred             CCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCc
Confidence            334567888877 455566666778888888766543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.01  E-value=0.36  Score=38.83  Aligned_cols=76  Identities=14%  Similarity=0.105  Sum_probs=55.7

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe------------EEEEEeeec----CCcceEEEEEeecC-CCCeEEEE
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------------TVSSSWVHS----AAHGIVSVATGPSI-GLNKVISQ   82 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~------------~~~~~~~~~----~~~~v~~~~~~~~~-~~~~l~s~   82 (291)
                      .|..+..+|+|++||..+. .+|.|-.+..+.            ..+.+....    ...+|..+.|+|.. .+..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            6888999999999998865 578888877321            122333221    12569999999932 24689999


Q ss_pred             eCCCeEEEEECCCC
Q 022870           83 GRDGTVKCWDIENG   96 (291)
Q Consensus        83 ~~dg~i~iwd~~~~   96 (291)
                      ..|+.|++||+...
T Consensus       146 tsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          146 KEDDTITMFDILNS  159 (452)
T ss_dssp             ETTSCEEEEETTCT
T ss_pred             ecCCEEEEEEcccC
Confidence            99999999999873

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.98  E-value=0.43  Score=37.60  Aligned_cols=63  Identities=13%  Similarity=0.059  Sum_probs=40.5

Q ss_pred             eeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce--eeccccccceeEEEeec-CCCeeEEecCC
Q 022870          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL--TAMKVHLEPVLCLSIDE-SCNGGISGGAD  273 (291)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~--~~~~~h~~~v~~~~~~~-~~~~l~s~s~d  273 (291)
                      ....++ |+|+   ++.+.++-+..+.|+.|++...+...  ..+ ...+..-.+++++ +|++.+++..+
T Consensus       222 ~pNGia-~spD---g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          222 FANGIN-ISPD---GKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             SEEEEE-ECTT---SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             ccCcce-ECCC---CCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence            345565 9998   54355556678899999997423321  223 2245678899998 59877766533

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.96  E-value=0.67  Score=39.66  Aligned_cols=202  Identities=6%  Similarity=-0.089  Sum_probs=106.3

Q ss_pred             ceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870           20 SVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        20 ~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~   98 (291)
                      .+.+++|.+ ++.++++-...+.|+.++++.......+....  .....+++.+. .++++++-+..+.|.+.++.....
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~--~~p~GlAvD~~-~~~lY~tD~~~~~I~v~~~~G~~~  426 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI--AHPDGIAVDWV-ARNLYWTDTGTDRIEVTRLNGTMR  426 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSC
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCC--CCcCceEEecc-cCcEEEEeCCCCcEEEEeCCCCeE
Confidence            467888988 44445555567889889876543332232221  23678888761 334445555678899888875421


Q ss_pred             CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD  178 (291)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd  178 (291)
                      ..  +..........                                        +++.|....++.+--...+.|...+
T Consensus       427 ~~--l~~~~l~~P~~----------------------------------------iavdp~~G~ly~tD~g~~~~I~r~~  464 (619)
T 3s94_A          427 KI--LISEDLEEPRA----------------------------------------IVLDPMVGYMYWTDWGEIPKIERAA  464 (619)
T ss_dssp             EE--EECTTCCSEEE----------------------------------------EEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EE--EEECCCCCeee----------------------------------------EEEEcCCCcEEEecCCCCCEEEEEc
Confidence            00  10000000000                                        5577765555553322246677777


Q ss_pred             CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEE
Q 022870          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL  258 (291)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~  258 (291)
                      +..... ..+..       ..    -.....++ +.+..  ++ +.++=+..+.|..+++.. ......+...-....+|
T Consensus       465 ~dG~~~-~~l~~-------~~----l~~P~Gla-lD~~~--~~-LY~aD~~~~~I~~~~~dG-~~~~~~~~~~l~~P~gl  527 (619)
T 3s94_A          465 LDGSDR-VVLVN-------TS----LGWPNGLA-LDYDE--GK-IYWGDAKTDKIEVMNTDG-TGRRVLVEDKIPHIFGF  527 (619)
T ss_dssp             TTSCSC-EEEEC-------SS----CSCEEEEE-EETTT--TE-EEEEETTTTEEEEEESSS-CCCEEEEECCCCSSCCE
T ss_pred             cCCCcc-EEEEe-------CC----CCCCeeeE-EcccC--CE-EEEEECCCCEEEEEecCC-CceEEEeccCCCCcEEE
Confidence            754332 22221       11    12344555 77652  33 445555667899999864 22211122222334567


Q ss_pred             EeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          259 SIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       259 ~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      +...+ .+.++-...+.|...+..++
T Consensus       528 av~~~-~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          528 TLLGD-YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             EEETT-EEEEECTTSSCEEEEESSSC
T ss_pred             EEECC-EEEEeecCCCeEEEEEcCCC
Confidence            77655 44455555667777777665

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.95  E-value=1.1  Score=42.17  Aligned_cols=246  Identities=11%  Similarity=0.084  Sum_probs=125.0

Q ss_pred             EcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccc
Q 022870           26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLT  105 (291)
Q Consensus        26 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  105 (291)
                      .+|..+.+|.-. ..++.|+|+++.+.+++....   ++|.-=.|-.  + +.|+-.+. ..|..|++....... .++.
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~---e~VvfWkWis--~-~~l~lVT~-~aVyHW~~~~~s~P~-k~fd  143 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS--L-NTVALVTD-NAVYHWSMEGESQPV-KMFD  143 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccccC---CCceEEEecC--C-CeeEEEcC-CeEEEeccCCCCccH-HHHh
Confidence            456555665544 578999999988877766654   4477777765  4 56665554 579999997532111 0111


Q ss_pred             cc----cceEEEEEeecccCccceeccC---C-CCceeeecccCccccccCCCCCC--ccc----CCCCCcEEEEe--cC
Q 022870          106 IK----TNSYHFCKLSLVKEPYANAKQA---N-EPKDCYEREVGETVDTDSLCDSK--DDV----PAEGPKYMAVA--GE  169 (291)
Q Consensus       106 ~~----~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~--g~  169 (291)
                      .+    ......-..+............   + ..+.+--....+.....+.||..  ..+    .+....++..+  ..
T Consensus       144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~  223 (1630)
T 1xi4_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ  223 (1630)
T ss_pred             cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecC
Confidence            11    1111111112222222211111   1 11111122223334444555544  111    12223343321  11


Q ss_pred             CcCeEEEEeCCCc-ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          170 QLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       170 ~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      ..+.++|-++... .....+......-+ -.+........++. .++..  |  .+..-+.-|.|.+||+.+ +.++..-
T Consensus       224 ~g~kLhi~Ei~~~~~~~~~f~kk~~~~~-~~~~~~~Dfpv~~~-vs~k~--g--~iy~itk~G~~~~~d~~t-~~~i~~~  296 (1630)
T 1xi4_A          224 AGGKLHIIEVGTPPTGNQPFPKKAVDVF-FPPEAQNDFPVAMQ-ISEKH--D--VVFLITKYGYIHLYDLET-GTCIYMN  296 (1630)
T ss_pred             CCceEEEEecCCCccCCCCCcccccccc-CCcccccCcceEEE-ecccc--C--EEEEEecCceEEEEeccc-chhhhhc
Confidence            2367888888543 11111110000000 01112345566666 66652  3  777888899999999999 7777666


Q ss_pred             cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                      +-...+|...+-+....-++.....|.|.--.++...++
T Consensus       297 ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          297 RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             cccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence            655666666555544334555667777777666665544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.89  E-value=0.4  Score=36.55  Aligned_cols=65  Identities=14%  Similarity=0.167  Sum_probs=35.0

Q ss_pred             CCCEEEEec-CC-----CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC-----CeEEEEECCCCC
Q 022870           29 TKPILFAGT-TG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIENGG   97 (291)
Q Consensus        29 ~~~~l~s~~-~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~   97 (291)
                      ++.+++.|+ .+     ..+.+||+.+.+-...-..... ..-.+++. .  ++..++.|+.+     ..+.+||+.+.+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~-~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~   89 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK-RRYVASVS-L--HDRIYVIGGYDGRSRLSSVECLDYTADE   89 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC-CBSCEEEE-E--TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh-hccccEEE-E--CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence            445666676 33     3688999887653321111111 11122222 2  44677777755     358888887765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.84  E-value=0.44  Score=36.56  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=33.0

Q ss_pred             EEEeecCC-----CcEEEEEccCCCCceeecccc--ccceeEEEeecCCCeeEEecCC-----CeEEEEEcCCCce
Q 022870          223 NVLAGYED-----GSILVWDIRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGAD-----QKIVLYNLDHSTV  286 (291)
Q Consensus       223 ~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~d-----g~i~vw~~~~~~~  286 (291)
                      +++.|+.+     ..+.+||+.+ .+ -..+...  ...-.+++.. ++++++.|+.+     ..+.+||+++.+-
T Consensus       218 iyv~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          218 IYAAGGYDGQDQLNSVERYDVET-ET-WTFVAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTT-TE-EEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             EEEEeCCCCCCccceEEEEeCCC-Cc-EEECCCCCCCccceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence            56666543     5699999886 32 1111110  0111122222 45677777754     4688899887653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.63  E-value=0.55  Score=43.98  Aligned_cols=220  Identities=10%  Similarity=0.045  Sum_probs=117.3

Q ss_pred             CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeec
Q 022870           39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL  118 (291)
Q Consensus        39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (291)
                      ..+|.|-|+.+++.+..-...     --+.-.+|  ..+.++.- ...++.|+|+++.....  ...+.. .....  . 
T Consensus        47 ~~~vvIidl~~~~~~~rrpi~-----AdsAIMnP--~~~iiALr-ag~~lQiFnl~~k~klk--s~~~~e-~VvfW--k-  112 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPIS-----ADSAIMNP--ASKVIALK-AGKTLQIFNIEMKSKMK--AHTMTD-DVTFW--K-  112 (1630)
T ss_pred             CceEEEEECCCCCCccccccc-----chhhccCC--CcceEEEe-cCCeEEEeehHHhhhhc--ccccCC-CceEE--E-
Confidence            347888888776544221111     22444677  54555443 36799999999876544  222221 11111  1 


Q ss_pred             ccCccceeccCCCCceeeecccCccccccCCCCCC--------cccCCCCCcEEEEe-----cCCcCeEEEEeCCCccee
Q 022870          119 VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--------DDVPAEGPKYMAVA-----GEQLSEVEIWDLNTAERC  185 (291)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-----g~~d~~i~~wd~~~~~~~  185 (291)
                      ..++...+......+..|++.....+...+..|..        -..+++.+.++++.     |.-.|.+.+|..+.+. .
T Consensus       113 Wis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-s  191 (1630)
T 1xi4_A          113 WISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-S  191 (1630)
T ss_pred             ecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-c
Confidence            12334456666777788888654444444444433        34456666655432     2235788888887542 2


Q ss_pred             eEecccccCCCCCCCCCcceeeeeEEEecCCCCC-CceEEEeec---CCCcEEEEEccCC--CCce------eeccc---
Q 022870          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ-GFVNVLAGY---EDGSILVWDIRNP--GIPL------TAMKV---  250 (291)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-g~~~l~~g~---~dg~i~vwd~~~~--~~~~------~~~~~---  250 (291)
                      +.++        ||......       +..++.. ....++.+.   ..++++|.++..+  +.+.      ..+..   
T Consensus       192 Q~ie--------gha~~F~~-------~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~  256 (1630)
T 1xi4_A          192 QPIE--------GHAASFAQ-------FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA  256 (1630)
T ss_pred             hhhh--------HhHhhhhe-------eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccc
Confidence            2233        44221110       1111000 110222221   2368999988542  1111      11111   


Q ss_pred             cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       251 h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      -.+-..++..++.-..+...+.-|.|.++|++++.+++
T Consensus       257 ~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             ccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence            13445677788887788888899999999999998764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.62  E-value=0.53  Score=35.92  Aligned_cols=53  Identities=9%  Similarity=0.112  Sum_probs=28.1

Q ss_pred             CcEEEEEccCCCCc--eeeccccccceeEEEeecCCCeeEEecCC-----CeEEEEEcCCCce
Q 022870          231 GSILVWDIRNPGIP--LTAMKVHLEPVLCLSIDESCNGGISGGAD-----QKIVLYNLDHSTV  286 (291)
Q Consensus       231 g~i~vwd~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----g~i~vw~~~~~~~  286 (291)
                      ..+.+||+.+ .+-  +..+...... .+++.. ++.+++.|+.+     ..+.+||+++.+-
T Consensus       173 ~~~~~yd~~~-~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          173 STVECYNATT-NEWTYIAEMSTRRSG-AGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             CCEEEEETTT-TEEEEECCCSSCCBS-CEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred             cEEEEEeCCC-CcEEECCCCcccccc-ccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence            4588999876 321  1111111111 122222 45677777764     3688999887653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.21  E-value=0.81  Score=35.87  Aligned_cols=55  Identities=16%  Similarity=0.044  Sum_probs=28.2

Q ss_pred             cEEEEEccCCCC--ceeeccccccceeEEEeecCCCeeEEecCCC------eEEEEEcCCCceeee
Q 022870          232 SILVWDIRNPGI--PLTAMKVHLEPVLCLSIDESCNGGISGGADQ------KIVLYNLDHSTVSHC  289 (291)
Q Consensus       232 ~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg------~i~vw~~~~~~~~~~  289 (291)
                      .+.+||+.+ .+  .+..+......-..  ..-++++++.|+.++      .|.++++++++.+..
T Consensus       286 ~~~~yd~~~-~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          286 STDIHLWHN-GKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CCEEEECC----CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eEEEEecCC-CceeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            578899886 32  12222211111112  223556777777552      466779998887754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.18  E-value=0.78  Score=35.15  Aligned_cols=61  Identities=18%  Similarity=0.067  Sum_probs=32.5

Q ss_pred             EEEeecCC-----CcEEEEEccCCCCc--eeeccccccceeEEEeecCCCeeEEecCC-----CeEEEEEcCCCce
Q 022870          223 NVLAGYED-----GSILVWDIRNPGIP--LTAMKVHLEPVLCLSIDESCNGGISGGAD-----QKIVLYNLDHSTV  286 (291)
Q Consensus       223 ~l~~g~~d-----g~i~vwd~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----g~i~vw~~~~~~~  286 (291)
                      +++.|+.+     ..+.+||+.+ .+-  +..+...... .+++.. ++.+++.|+.+     ..+.+||+++.+-
T Consensus       171 iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          171 LYAVGGFDGTNRLNSAECYYPER-NEWRMITAMNTIRSG-AGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTT-TEEEECCCCSSCCBS-CEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             EEEEeCCCCCCcCceEEEEeCCC-CeEeeCCCCCCcccc-ceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            55555543     4689999876 321  1111111111 122222 55577777664     4688999887653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.99  E-value=1  Score=35.45  Aligned_cols=73  Identities=18%  Similarity=0.190  Sum_probs=44.6

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE--EEEee-ecCCcceEEEEEeecCC---CCeEEEEeC-C-----
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSWV-HSAAHGIVSVATGPSIG---LNKVISQGR-D-----   85 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~---~~~l~s~~~-d-----   85 (291)
                      -..-..++|.|+|+++++ ..+|.|++++  +++..  ..+.. .........|+++|  +   +..|+.+.. +     
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p--df~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP--RFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEECTTSSE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC--CCCCCCEEEEEEecCCCCCc
Confidence            345679999999986555 5569999998  44422  21211 11123478999999  6   445554433 2     


Q ss_pred             CeEEEEECCC
Q 022870           86 GTVKCWDIEN   95 (291)
Q Consensus        86 g~i~iwd~~~   95 (291)
                      +.|..|+...
T Consensus       105 ~~v~r~~~~~  114 (352)
T 2ism_A          105 NQVVRLRHLG  114 (352)
T ss_dssp             EEEEEEEECS
T ss_pred             cEEEEEEeCC
Confidence            5666676653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.94  E-value=2.3  Score=39.39  Aligned_cols=74  Identities=7%  Similarity=-0.022  Sum_probs=46.6

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCC----CCeEEEEeC-CCeEEEEECC
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG----LNKVISQGR-DGTVKCWDIE   94 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~-dg~i~iwd~~   94 (291)
                      .|...+.+.  .+++.++ ++.+..+++++++... .....-...|.|+++.|..+    +.+++.|.. |++|+|+++.
T Consensus       515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~-~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~  590 (1158)
T 3ei3_A          515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELRQ-ISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP  590 (1158)
T ss_dssp             CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEE-EEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred             EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceee-ecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence            455555443  3555554 5778888776654332 22111124599999986322    368888886 9999999998


Q ss_pred             CCC
Q 022870           95 NGG   97 (291)
Q Consensus        95 ~~~   97 (291)
                      +.+
T Consensus       591 ~l~  593 (1158)
T 3ei3_A          591 SFE  593 (1158)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.87  E-value=0.98  Score=34.70  Aligned_cols=66  Identities=12%  Similarity=0.176  Sum_probs=33.2

Q ss_pred             CCCCEEEEecC-----C------CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC--------CeE
Q 022870           28 QTKPILFAGTT-----G------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--------GTV   88 (291)
Q Consensus        28 ~~~~~l~s~~~-----d------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i   88 (291)
                      .++.+++.|+.     .      ..+.+||..+.+-.. +..-..+..-.+++..   ++..++.|+.+        ..+
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~  119 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSV  119 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceE
Confidence            46667777773     1      127788887765422 1111111001122222   34566666632        357


Q ss_pred             EEEECCCCC
Q 022870           89 KCWDIENGG   97 (291)
Q Consensus        89 ~iwd~~~~~   97 (291)
                      .+||..+.+
T Consensus       120 ~~~d~~~~~  128 (315)
T 4asc_A          120 MCYDRLSFK  128 (315)
T ss_dssp             EEEETTTTE
T ss_pred             EEECCCCCc
Confidence            788877654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.67  E-value=1.5  Score=35.90  Aligned_cols=30  Identities=17%  Similarity=0.212  Sum_probs=21.0

Q ss_pred             eEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      .+.|+|.|  +|+++++-...+.|++++..++
T Consensus        29 P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           29 PHALLWGP--DNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             EEEEEECT--TSCEEEEETTTCEEEEECTTTC
T ss_pred             ceEEEEcC--CCcEEEEEcCCCEEEEEECCCC
Confidence            68999999  9876665443346888876443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.34  E-value=1.3  Score=33.79  Aligned_cols=62  Identities=6%  Similarity=-0.019  Sum_probs=32.9

Q ss_pred             EEEEecC--CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC----CeEEEEECCCCC
Q 022870           32 ILFAGTT--GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD----GTVKCWDIENGG   97 (291)
Q Consensus        32 ~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~   97 (291)
                      +++.|+.  ...+.+||..+.+-...-....... -.+++. -  ++..++.|+.+    ..+.+||..+.+
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~d~~~~~   81 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRR-DAACVF-W--DNVVYILGGSQLFPIKRMDCYNVVKDS   81 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCB-SCEEEE-E--TTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccc-eeEEEE-E--CCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence            4555654  3568899988765432211111111 112222 2  44666777754    567788877664

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.99  E-value=3  Score=36.64  Aligned_cols=199  Identities=11%  Similarity=0.087  Sum_probs=100.6

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL   98 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~   98 (291)
                      ..|.++....+| .|..|+.+| +..||..+.+.........  ..|.++.. .  + ..|..++.+ -|..+|..+.+.
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~--~~i~~i~~-~--~-g~lWigt~~-Gl~~~~~~~~~~  133 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFP--TDVRTMAL-Q--G-DTLWLGALN-GLYTYQLQSRKL  133 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCC--SCEEEEEE-E--T-TEEEEEETT-EEEEEETTTCCE
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCC--ceEEEEEe-c--C-CcEEEEcCC-cceeEeCCCCeE
Confidence            458888777776 566666665 7889987764332111111  23776653 3  4 456666665 578888876542


Q ss_pred             CCCCcc--ccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870           99 SSNPSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus        99 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  176 (291)
                      ..-...  .+.......                                        +....++. +.+.+  . +-+..
T Consensus       134 ~~~~~~~~~l~~~~i~~----------------------------------------i~~d~~g~-lWigt--~-~Gl~~  169 (758)
T 3ott_A          134 TSFDTRRNGLPNNTIYS----------------------------------------IIRTKDNQ-IYVGT--Y-NGLCR  169 (758)
T ss_dssp             EEECHHHHCCSCSCEEE----------------------------------------EEECTTCC-EEEEE--T-TEEEE
T ss_pred             EEeccCCCCcCCCeEEE----------------------------------------EEEcCCCC-EEEEe--C-CCHhh
Confidence            110000  000000000                                        22334554 44423  2 34888


Q ss_pred             EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccccee
Q 022870          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (291)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (291)
                      ||..+++.. .+...      .........+.++. ..++   +. .|..|+. +-+..+|..+ ++...........|.
T Consensus       170 ~~~~~~~~~-~~~~~------~~~~~~~~~i~~i~-~d~~---~~-~lWigt~-~Gl~~~~~~~-~~~~~~~~l~~~~i~  235 (758)
T 3ott_A          170 YIPSNGKFE-GIPLP------VHSSQSNLFVNSLL-EDTT---RQ-CVWIGTE-GYLFQYFPST-GQIKQTEAFHNNSIK  235 (758)
T ss_dssp             EETTTTEEE-EECCC------CCTTCSSCCEEEEE-EETT---TT-EEEEEEE-EEEEEEETTT-TEEEEEEEEEEEEEE
T ss_pred             CccCCCceE-EecCC------CccccccceeEEEE-EECC---CC-EEEEEEC-CCCeEEcCCC-CeEEeccCCCCCeEE
Confidence            888766432 22210      11011122344443 4333   32 4555664 4588888775 332211111234688


Q ss_pred             EEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          257 CLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       257 ~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      ++..+.++.+.+. +.+| +.+++..++++
T Consensus       236 ~i~~d~~g~lWig-T~~G-l~~~~~~~~~~  263 (758)
T 3ott_A          236 SLALDGNGDLLAG-TDNG-LYVYHNDTTPL  263 (758)
T ss_dssp             EEEECTTCCEEEE-ETTE-EEEECCTTSCC
T ss_pred             EEEEcCCCCEEEE-eCCc-eeEEecCCCcE
Confidence            8888888875544 4444 77888766543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.90  E-value=1.8  Score=33.91  Aligned_cols=31  Identities=23%  Similarity=0.299  Sum_probs=23.8

Q ss_pred             ceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        64 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      .-+.|+|.|  +|.++++--..|.|++++...+
T Consensus        33 ~P~~ia~~p--dG~llVter~~G~I~~v~~~~g   63 (347)
T 3das_A           33 SPWGLAPLP--GGDLLVSSRDEATITRVDAKTG   63 (347)
T ss_dssp             SEEEEEECT--TSCEEEEETTTCEEEEECTTTC
T ss_pred             CceEEEEcC--CCcEEEEEecCCEEEEEECCCC
Confidence            378999999  9876666555899999876544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.79  E-value=1.9  Score=33.84  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=22.1

Q ss_pred             eEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870           65 IVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        65 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~   94 (291)
                      ...|+|.|  +|+.|+.+...|.|++++..
T Consensus        20 P~~i~~~p--dG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           20 PWALAFLP--DNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             EEEEEECS--TTCCEEEEETTTEEEEEETT
T ss_pred             cEEEEEcC--CCCEEEEEeCCceEEEEeCC
Confidence            68999999  98735566678999999853

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.73  E-value=1.8  Score=33.24  Aligned_cols=67  Identities=18%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             CCCCEEEEecC----CC-------eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC-------CeEE
Q 022870           28 QTKPILFAGTT----GG-------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-------GTVK   89 (291)
Q Consensus        28 ~~~~~l~s~~~----dg-------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------g~i~   89 (291)
                      .++.+++.|+.    ++       .+.+||..+.+-...-..... ..-.+++..   ++..++.|+.+       ..+.
T Consensus        55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA-RCLFGLGEV---DDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC-BCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEE
T ss_pred             ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc-ccccceEEE---CCEEEEEcCccCCCCcccceEE
Confidence            45667777773    12       277888876654322111111 111222222   34666677654       2477


Q ss_pred             EEECCCCCC
Q 022870           90 CWDIENGGL   98 (291)
Q Consensus        90 iwd~~~~~~   98 (291)
                      +||..+.+.
T Consensus       131 ~yd~~~~~W  139 (318)
T 2woz_A          131 CYDPVAAKW  139 (318)
T ss_dssp             EEETTTTEE
T ss_pred             EEeCCCCCE
Confidence            788776643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.69  E-value=0.39  Score=37.54  Aligned_cols=108  Identities=12%  Similarity=0.189  Sum_probs=62.7

Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCC-CCCceEEEee-cCCCcEEEEEccCCCCc
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-SQGFVNVLAG-YEDGSILVWDIRNPGIP  244 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~g~~~l~~g-~~dg~i~vwd~~~~~~~  244 (291)
                      .++.||.|.-+|..+++..-+++...           ........  .|.. .++. .++.. +.||.|+.+|..+ +..
T Consensus        15 v~t~dG~l~Ald~~tG~~~W~~~~~~-----------~~p~~~~~--~~~~~~~~~-~~vv~p~~dG~l~a~~~~~-G~~   79 (339)
T 2be1_A           15 AADVEGGLHAVDRRNGHIIWSIEPEN-----------FQPLIEIQ--EPSRLETYE-TLIIEPFGDGNIYYFNAHQ-GLQ   79 (339)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECGGG-----------SCCSEECC--CSCTTTSSE-EEEECCSTTTEEEEEETTT-EEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEecCCc-----------cCCcEEec--CCccccCCc-EEEEEECCCCEEEEEECCC-CcE
Confidence            45669999999999999998887410           01111110  1110 1133 34343 6899999999887 433


Q ss_pred             eeeccc----cccceeE---EEe-e----cCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          245 LTAMKV----HLEPVLC---LSI-D----ESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       245 ~~~~~~----h~~~v~~---~~~-~----~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      ...+..    ...++..   ... +    ..+..+++|+.+|.+...|+++|+.+..
T Consensus        80 ~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~  136 (339)
T 2be1_A           80 KLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA  136 (339)
T ss_dssp             EEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred             EeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            222221    1112221   000 0    0344688999999999999999988754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.29  E-value=2.4  Score=33.34  Aligned_cols=74  Identities=15%  Similarity=0.066  Sum_probs=44.9

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-EEEEEee-ecCCcceEEEEEeecCC---CCeEEEEeC----C---
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWV-HSAAHGIVSVATGPSIG---LNKVISQGR----D---   85 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~---~~~l~s~~~----d---   85 (291)
                      -.....|+|.|+|+++++ ..+|.|+++| .+++ .+..+.. .........|+++|  +   +..|+.+..    +   
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP--EFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC--CCCcCCEEEEEEeccCCCCCc
Confidence            345689999999975555 5569999997 4555 2222110 11123488999999  6   445554332    2   


Q ss_pred             -CeEEEEECCC
Q 022870           86 -GTVKCWDIEN   95 (291)
Q Consensus        86 -g~i~iwd~~~   95 (291)
                       ..|..|+...
T Consensus       104 ~~~v~r~~~~~  114 (354)
T 3a9g_A          104 RNRVIRGRLDG  114 (354)
T ss_dssp             EEEEEEEEECS
T ss_pred             ceEEEEEEECC
Confidence             4566666654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.79  E-value=0.64  Score=33.78  Aligned_cols=108  Identities=7%  Similarity=-0.092  Sum_probs=55.5

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                      ++|+|+|. +.++   .+|.+.-.+..+.+...-+......   +... -.. -.++. |.|+   |.  |.+. .||.|
T Consensus        46 laf~P~G~-LYaV---~~G~Ly~~~~~t~~~~~W~~s~t~I---G~~G-w~~-F~a~~-fD~~---G~--LYav-~dG~i  109 (236)
T 1tl2_A           46 LFLSPGGE-LYGV---LNDKIYKGTPPTHDNDNWMGRAKKI---GNGG-WNQ-FQFLF-FDPN---GY--LYAV-SKDKL  109 (236)
T ss_dssp             EEECTTSC-EEEE---ETTEEEEESCCCSTTCCHHHHCEEE---ECSC-GGG-CSEEE-ECTT---SC--EEEE-ETTEE
T ss_pred             EEECCCcc-EEEE---eCCeEEEECCCCCCcccccccccEe---cccc-ccc-ceEEE-ECCC---CC--EEEe-CCCEE
Confidence            88999875 5654   3577777776553221111100000   0000 011 23343 8887   53  4444 66999


Q ss_pred             EEEEccCCCCceeeccc------cccceeEEEeecCCCeeEEecCCCeEEEE
Q 022870          234 LVWDIRNPGIPLTAMKV------HLEPVLCLSIDESCNGGISGGADQKIVLY  279 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  279 (291)
                      +-++-.+.+.--..-.+      -=..+..|.++|+|.+.+..  |+.++-+
T Consensus       110 yr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~  159 (236)
T 1tl2_A          110 YKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA  159 (236)
T ss_dssp             EEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred             EEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence            88876431221110000      11467899999999865555  7775433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.73  E-value=2.6  Score=32.27  Aligned_cols=61  Identities=15%  Similarity=0.147  Sum_probs=32.7

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeeecC-CcceEEEEEeecCCCCeEEEEeC----C-------CeEEEEECCCCCC
Q 022870           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGR----D-------GTVKCWDIENGGL   98 (291)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~----d-------g~i~iwd~~~~~~   98 (291)
                      +++.|+  ..+.+||..+++-.. ...... +..-.+++. .  ++..++.|+.    +       ..+..||..+.+.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   79 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVT-K--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW   79 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEEC-T--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEE-E--CCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence            455666  579999998876432 221110 111223332 3  5577777773    1       1267788776643

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.70  E-value=3.5  Score=37.33  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=33.4

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW   57 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~   57 (291)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            56777777888899999999999999999999988765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.45  E-value=3.2  Score=32.58  Aligned_cols=51  Identities=8%  Similarity=0.001  Sum_probs=31.8

Q ss_pred             CceEEEeecCCCcEEEEEccCCCCc-----eeeccccccceeEEEeecCCCeeEEec
Q 022870          220 GFVNVLAGYEDGSILVWDIRNPGIP-----LTAMKVHLEPVLCLSIDESCNGGISGG  271 (291)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~s  271 (291)
                      |. ++++....+.|...++...+..     ...+..-...+..++++|+|.++++..
T Consensus       278 G~-l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          278 GD-LYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TE-EEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CE-EEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            44 5566666778888887752221     122212235789999999997666653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.22  E-value=2.4  Score=38.35  Aligned_cols=36  Identities=11%  Similarity=0.124  Sum_probs=31.4

Q ss_pred             ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t  272 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  272 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence            456777788888999999999999999999998865

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=91.03  E-value=4.4  Score=31.33  Aligned_cols=67  Identities=12%  Similarity=-0.010  Sum_probs=37.0

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeee--cCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH--SAAHGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      ...+.++.|.+++..++. +.+|.|. ...+.++.=..+...  .....+.++.+.+  + . ++.++.++.|..
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~-~-~~~~g~~g~i~~  103 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG--N-E-GWIVGEPPIMLH  103 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET--T-E-EEEEEETTEEEE
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC--C-e-EEEEECCCeEEE
Confidence            457999999877767775 4567653 333334321111111  1113588999876  3 3 444556675543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.52  E-value=6.3  Score=32.24  Aligned_cols=71  Identities=10%  Similarity=0.096  Sum_probs=43.5

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEE--EEeee----cCCcceEEEEEeecCC---CCeEEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS--SSWVH----SAAHGIVSVATGPSIG---LNKVIS   81 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~----~~~~~v~~~~~~~~~~---~~~l~s   81 (291)
                      +..+..--...+.|+|.|+|+++++-...+.|++++..+++...  .+...    ........|+|+|  +   +..|+.
T Consensus        19 ~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P--df~~~g~lYv   96 (454)
T 1cru_A           19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP--DFKNNPYIYI   96 (454)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT--TTTTSCEEEE
T ss_pred             EEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC--CcCcCCEEEE
Confidence            33443333456799999999877776554579888865554322  22110    1224578999998  5   555554


Q ss_pred             Ee
Q 022870           82 QG   83 (291)
Q Consensus        82 ~~   83 (291)
                      +.
T Consensus        97 ~~   98 (454)
T 1cru_A           97 SG   98 (454)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.17  E-value=8.8  Score=33.39  Aligned_cols=55  Identities=9%  Similarity=0.001  Sum_probs=29.7

Q ss_pred             CcEEEEEccCCCCc-----eeeccc---cccceeEEEeecCCCeeEEecC--------CCeEEEEEcCCCce
Q 022870          231 GSILVWDIRNPGIP-----LTAMKV---HLEPVLCLSIDESCNGGISGGA--------DQKIVLYNLDHSTV  286 (291)
Q Consensus       231 g~i~vwd~~~~~~~-----~~~~~~---h~~~v~~~~~~~~~~~l~s~s~--------dg~i~vw~~~~~~~  286 (291)
                      ..+.+||+.+ ..-     ...+..   ....-.+++...++.+++.|+.        ...+.+||+.+.+-
T Consensus       568 ~~v~~yd~~~-~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          568 DKAIIFKYDA-ENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             CEEEEEEECT-TCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             CcEEEEEccC-CccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            4699999987 431     111111   1111123333343567777774        34689999987654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=89.75  E-value=5.5  Score=30.45  Aligned_cols=60  Identities=12%  Similarity=0.082  Sum_probs=30.9

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEeeec-CCcceEEEEEeecCCCCeEEEEeC----CC-------eEEEEECCCCC
Q 022870           32 ILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGR----DG-------TVKCWDIENGG   97 (291)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg-------~i~iwd~~~~~   97 (291)
                      +++.|+.  .+..||..+.+-.. ..... .+..-.+++ ..  ++..++.|+.    ++       .+..||..+.+
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~-~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~   89 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIV-TQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE   89 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEE-CS--SSCEEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred             hhhcccc--ceEEECCCCCceec-ccCCccCCccceEEE-EE--CCEEEEECCcccCccccCCCccccEEEEeCCCCc
Confidence            4555654  48899998876543 22211 111122333 23  4567777773    11       16677776654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.48  E-value=2.1  Score=35.95  Aligned_cols=107  Identities=11%  Similarity=0.158  Sum_probs=62.6

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceee-----EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT-----RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (291)
                      +.++|||+++++ +|-.+.++.++|++......     ..+. +..   +......+ ..-.+ |.++   |. ...+-.
T Consensus       328 v~vsPDGkyi~v-~GKLsptvtV~d~~k~~~~~~~k~~~~~~-~~~---ae~e~GlG-PlHt~-Fd~~---G~-aYTtlf  396 (638)
T 3sbq_A          328 CNTSSDGKYFIA-AGKLSPTCSMIAIDKLPDLFAGKLADPRD-VIV---GEPELGLG-PLHTT-FDGR---GN-AYTTLF  396 (638)
T ss_dssp             EEECTTSCEEEE-ECTTSSBEEEEEGGGHHHHHTTCCSCGGG-GEE---ECCBCCSC-EEEEE-ECSS---SE-EEEEET
T ss_pred             eeeCCCCCEEEE-cCCCCCeEEEEEeehhhhhhhccccCccc-ceE---eeccCCCc-ccEEE-ECCC---Cc-eEeeee
Confidence            888999988776 68789999999998432100     0000 000   01011122 23333 8887   53 666777


Q ss_pred             CCCcEEEEEccCC---------CCceeeccccccceeEEE-----eecCCCeeEEec
Q 022870          229 EDGSILVWDIRNP---------GIPLTAMKVHLEPVLCLS-----IDESCNGGISGG  271 (291)
Q Consensus       229 ~dg~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~-----~~~~~~~l~s~s  271 (291)
                      -|..|.-|++...         ...+..+.-|-.+-...+     -.++|++|++..
T Consensus       397 idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          397 IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             ecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            8999999999751         134455555544433322     267888888764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=89.28  E-value=6.7  Score=30.75  Aligned_cols=68  Identities=21%  Similarity=0.320  Sum_probs=39.7

Q ss_pred             eEEecCCccceeEEEEcCCCC-EEEEecCCCeEEEEeCCCCeEEEEEee-----ecCCcceEEEEEeecCC---CCeEEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWV-----HSAAHGIVSVATGPSIG---LNKVIS   81 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~---~~~l~s   81 (291)
                      +..+...-.....|+|.|+|+ +++ +...|.|++++. ++.....+..     .........|+++|  +   +..|+.
T Consensus        10 ~~~va~~l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lYv   85 (353)
T 2g8s_A           10 VEVLQDKLDHPWALAFLPDNHGMLI-TLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAP--DFAQSRRIWL   85 (353)
T ss_dssp             EEEEEEEESSEEEEEECSTTCCEEE-EETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECT--THHHHCEEEE
T ss_pred             EEEEECCCCCcEEEEEcCCCCEEEE-EeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECC--CCCCCCEEEE
Confidence            333333334568999999998 555 456799999985 3432211110     11123478999998  5   444444


Q ss_pred             E
Q 022870           82 Q   82 (291)
Q Consensus        82 ~   82 (291)
                      .
T Consensus        86 ~   86 (353)
T 2g8s_A           86 S   86 (353)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.14  E-value=2.9  Score=35.13  Aligned_cols=68  Identities=16%  Similarity=0.080  Sum_probs=48.7

Q ss_pred             ecCCCCCCceEEEeecCCCcEEEEEccCC-----CCc-------eeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          213 YLPSKSQGFVNVLAGYEDGSILVWDIRNP-----GIP-------LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       213 ~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-----~~~-------~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      .+|+   |++.+++|-.+.++.|+|.+..     .+.       +.+... .-.....+|+++|+...|.--|..|.-|+
T Consensus       330 vsPD---Gkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          330 TSSD---GKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             ECTT---SCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             eCCC---CCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEEEEe
Confidence            7887   7767777788999999998831     111       222222 23456789999997667777899999999


Q ss_pred             cCCC
Q 022870          281 LDHS  284 (291)
Q Consensus       281 ~~~~  284 (291)
                      +...
T Consensus       406 i~~a  409 (638)
T 3sbq_A          406 MEEA  409 (638)
T ss_dssp             HHHH
T ss_pred             ccHH
Confidence            9753

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=88.86  E-value=7.2  Score=30.59  Aligned_cols=51  Identities=14%  Similarity=0.076  Sum_probs=33.6

Q ss_pred             CceEEEeecCCCcEEEEEccCCCCce--ee-ccccccceeEEEeecCCCeeEEec
Q 022870          220 GFVNVLAGYEDGSILVWDIRNPGIPL--TA-MKVHLEPVLCLSIDESCNGGISGG  271 (291)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~~~~--~~-~~~h~~~v~~~~~~~~~~~l~s~s  271 (291)
                      |. ++++....+.|...++...+...  .. +.+-...+..+++.|+|.+.++..
T Consensus       277 G~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          277 GW-LLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TE-EEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             Cc-EEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            54 66666777889999987522322  12 222245789999999997666654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=88.21  E-value=12  Score=32.48  Aligned_cols=67  Identities=13%  Similarity=0.113  Sum_probs=37.9

Q ss_pred             CCCEEEEecCC------CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC--eEEEEECCCCCC
Q 022870           29 TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGL   98 (291)
Q Consensus        29 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~   98 (291)
                      ++.+++.|+.+      ..+.+||..+.+-...-..... ..-.+++...  ++..++.|+.++  .+.+||..+...
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~-R~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~~t~~W  525 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT-RFRHSACSLP--DGNVLILGGVTEGPAMLLYNVTEEIF  525 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC-CBSCEEEECT--TSCEEEECCBCSSCSEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC-cccceEEEEc--CCEEEEECCCCCCCCEEEEECCCCce
Confidence            66677777654      3578889877543322111111 1122333333  557777887655  688899887643

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.37  E-value=2.5  Score=39.18  Aligned_cols=36  Identities=11%  Similarity=0.124  Sum_probs=30.3

Q ss_pred             ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t  274 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  274 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence            345556677888999999999999999999998865

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=86.22  E-value=11  Score=29.63  Aligned_cols=81  Identities=12%  Similarity=0.072  Sum_probs=49.2

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEE--EEe--eecCCcceEEEEEeecCC---CCeEEEE---
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS--SSW--VHSAAHGIVSVATGPSIG---LNKVISQ---   82 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~--~~~~~~~v~~~~~~~~~~---~~~l~s~---   82 (291)
                      .+..--..-+.|+|.|+|.++++--..|.|++++..+++...  .+.  ..........|+++|  +   ...|+..   
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~P--df~~~g~lYv~yt~  103 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSP--DYASDHMVYAYFTS  103 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECT--THHHHCEEEEEEEC
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecc--ccccCCEEEEEEec
Confidence            333334567899999999888877668999999866554322  111  011224589999998  4   2334332   


Q ss_pred             eCCCeEEEEECCC
Q 022870           83 GRDGTVKCWDIEN   95 (291)
Q Consensus        83 ~~dg~i~iwd~~~   95 (291)
                      ..++.|.-|.+..
T Consensus       104 ~~~~~v~R~~~~~  116 (347)
T 3das_A          104 ASDNRIVRMLYDE  116 (347)
T ss_dssp             SSSEEEEEEEBCT
T ss_pred             CCCCEEEEEEeCC
Confidence            2344555555544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=83.64  E-value=2.9  Score=30.42  Aligned_cols=69  Identities=3%  Similarity=-0.135  Sum_probs=42.3

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE------EEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT------VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD   92 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd   92 (291)
                      ..+..++|+|+|.+.+.  .+|.+.-.+..+...      -..+ +...-..-.++.|.|  +|.+.++  .||.|.-++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I-G~~Gw~~F~a~~fD~--~G~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI-GNGGWNQFQFLFFDP--NGYLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE-ECSCGGGCSEEEECT--TSCEEEE--ETTEEEEES
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe-cccccccceEEEECC--CCCEEEe--CCCEEEEeC
Confidence            46789999999975555  678766666544111      1111 111111247888999  8666666  569888776


Q ss_pred             CC
Q 022870           93 IE   94 (291)
Q Consensus        93 ~~   94 (291)
                      -.
T Consensus       114 pP  115 (236)
T 1tl2_A          114 PP  115 (236)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.54  E-value=13  Score=30.55  Aligned_cols=114  Identities=10%  Similarity=0.038  Sum_probs=55.4

Q ss_pred             cccCCCCC-cEEEEecCCcCeEEEEeCCCcc---eeeEecccccCCCCCCCCCcceeeeeEEEecCCCC-CCceEEEeec
Q 022870          154 DDVPAEGP-KYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS-QGFVNVLAGY  228 (291)
Q Consensus       154 ~~~~~~~~-~~~~~~g~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~g~~~l~~g~  228 (291)
                      ++|.|+|. +++++  ...|.|++++.....   .+..+....   ..+.......-.+.++ |+|+-. ++..|++-..
T Consensus        19 ~a~~pdG~~rl~V~--er~G~i~~~~~~g~~~~~~~~~~~~~~---~~g~~~~~e~Gllgia-~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           19 ALHSGDGSQRLFIL--EKEGYVKILTPEGEIFKEPYLDIHKLV---QSGIKGGDERGLLSLA-FHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             EECCSSSSCCEEEE--ETTTEEEEECTTSCBCSSCSEECTTTB---CCCCSSSCCCSEEEEE-ECTTHHHHCEEEEEEEE
T ss_pred             EEECCCCCeEEEEE--eCCceEEEEeCCCCeeeeeecCCccee---ccCccccCCCcceeeE-eCCCCcCCCEEEEEEeC
Confidence            77899986 56643  357999999754321   222222100   0000001123456776 998611 1332333222


Q ss_pred             C-C----------CcEEEEEccCC---------CCceeecc--ccccceeEEEeecCCCeeEEecCC
Q 022870          229 E-D----------GSILVWDIRNP---------GIPLTAMK--VHLEPVLCLSIDESCNGGISGGAD  273 (291)
Q Consensus       229 ~-d----------g~i~vwd~~~~---------~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~d  273 (291)
                      . +          ..|.-|.+...         .+.+..+.  ........|+|.|||.+.++.++.
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence            1 1          13444555421         11222221  112345789999999877776654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.52  E-value=1.7  Score=40.24  Aligned_cols=39  Identities=15%  Similarity=0.206  Sum_probs=32.8

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEee
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV   58 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~   58 (291)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL  277 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  277 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence            455666677888999999999999999999999888653

>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}

Probab=80.49  E-value=12  Score=32.34  Aligned_cols=80  Identities=11%  Similarity=0.194  Sum_probs=47.8

Q ss_pred             CceEEecCCccceeEEEEc----CCC--CEEEEecCCCeEE-EEeCCCCe-------EEEEEeeecCCcceEEEEEeecC
Q 022870            9 DPVAVLRGHRASVTDVCFH----QTK--PILFAGTTGGELR-IWDTVQHR-------TVSSSWVHSAAHGIVSVATGPSI   74 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~----~~~--~~l~s~~~dg~v~-iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~   74 (291)
                      +|+....+.....+.++.+    +++  ..++.|+.+|.|+ +.....+.       .+..+.......+|..|.+++  
T Consensus       402 ~Pll~~~~~~~~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~--  479 (667)
T 4gz8_A          402 RPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELST--  479 (667)
T ss_dssp             SCSEEECSSSCCEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEET--
T ss_pred             CceEEEcCcccceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcC--
Confidence            4444444433345556553    234  3577899999875 33222211       233344434446799999999  


Q ss_pred             CCCeEEEEeCCCeEEE
Q 022870           75 GLNKVISQGRDGTVKC   90 (291)
Q Consensus        75 ~~~~l~s~~~dg~i~i   90 (291)
                      +...|+.++.++.+++
T Consensus       480 ~~~~LYV~t~~~V~kV  495 (667)
T 4gz8_A          480 KQQQLYIGSTAGVAQL  495 (667)
T ss_dssp             TTTEEEEEBSSCEEEE
T ss_pred             CCCEEEEEECCEEEEE
Confidence            8889999998876654

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=80.38  E-value=4.2  Score=35.25  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=31.4

Q ss_pred             cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEee
Q 022870           19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV   58 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~   58 (291)
                      ..|.++.+  +..++++-+.|.++|+|++.+++++.+...
T Consensus       222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            45666665  356999999999999999999999888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	291
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 2e-11
 Identities = 39/286 (13%), Positives = 92/286 (32%), Gaps = 10/286 (3%)

Query: 6   PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
           P P     L GHR+ VT V FH    ++ + +    +++WD        +   H+    +
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT--DSV 62

Query: 66  VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125
             ++   S  L    S      +  +           ++    ++     +    +   +
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPNGDHIVS 118

Query: 126 AKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185
           A +    K    +            +    V       +  +      V +W + T E  
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

Query: 186 TRLHQNSCGG-SPNFSSKGRGMCMAVQAYLPSKSQGFVN--VLAGYEDGSILVWDIRNPG 242
             L ++       +++ +     ++      +K  G     +L+G  D +I +WD+   G
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-G 237

Query: 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH 288
           + L  +  H   V  +         +S   D+ + +++  +     
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 283

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 3e-08
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
            +  L GH   V  V FH     + +      LR+WD    R + +   H     + S+ 
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF--VTSLD 296

Query: 70  TGPSIGLNKVISQGRDGTVKCWD 92
              +     V++   D TVK W+
Sbjct: 297 FHKT--APYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 41/266 (15%), Positives = 88/266 (33%), Gaps = 46/266 (17%)

Query: 14  LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
           + GH  +V+ V        + + +    +++W+      V +   H     +V     P+
Sbjct: 97  MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR----PN 152

Query: 74  IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK 133
                + S   D TV+ W +                          KE  A  ++     
Sbjct: 153 QDGTLIASCSNDQTVRVWVVAT------------------------KECKAELREHRHVV 188

Query: 134 DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC 193
           +C       +  + S     +   +  P    ++G +   +++WD++T      L     
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL----- 243

Query: 194 GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253
                      G    V+  L      F+  L+  +D ++ VWD +N    +  +  H  
Sbjct: 244 ----------VGHDNWVRGVLFHSGGKFI--LSCADDKTLRVWDYKN-KRCMKTLNAHEH 290

Query: 254 PVLCLSIDESCNGGISGGADQKIVLY 279
            V  L   ++    ++G  DQ + ++
Sbjct: 291 FVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 3e-10
 Identities = 43/296 (14%), Positives = 93/296 (31%), Gaps = 33/296 (11%)

Query: 13  VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
            LRGH A +  + +     +L + +  G+L IWD+     V +  + S    +++ A   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAY-- 105

Query: 73  SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
           +   N V   G D     ++++    +   S  +  ++ +      + +        +  
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 133 KDCYEREVGETVDTDSLCD-SKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-------- 183
              ++ E G+   T +        +       + V+G   +  ++WD+            
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 184 ----RCTRLHQN-----SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN----------V 224
                      N     +                 +  Y        +           +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
           LAGY+D +  VWD          +  H   V CL + +      +G  D  + ++N
Sbjct: 286 LAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
                 GH + +  +CF         G+     R++D    + + +    +   GI SV+
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 70  TGPSIGLNKVISQGRDGTVKCWDIENG 96
              S     +++   D     WD    
Sbjct: 278 FSKS--GRLLLAGYDDFNCNVWDALKA 302

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 9   DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
           D   VL GH   V+ +        +  G+    L+IW+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 5e-09
 Identities = 35/288 (12%), Positives = 79/288 (27%), Gaps = 20/288 (6%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----H 63
            + +  + GH   +T +  +     L +G+  G +  W +       S+ + S       
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ 58

Query: 64  GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123
              S++   ++ +N +         K     N G ++  +              ++K   
Sbjct: 59  EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118

Query: 124 ANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 183
            N+  +          VG             D+         +  +              
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178

Query: 184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQ-----------AYLPSKSQGFVNVLAGYEDGS 232
               + +       +   K                         +      V  G  D +
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238

Query: 233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
           I ++ ++ P   + A+  H + V  L  +   +  +S GAD  I  +N
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.7 bits (119), Expect = 6e-08
 Identities = 30/275 (10%), Positives = 73/275 (26%), Gaps = 11/275 (4%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
                +   H    T      +     +G   G +RIWDT Q   +  + +   +  +  
Sbjct: 48  LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107

Query: 68  VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK 127
           ++          + +GR+     +  + G  + N +   +  +    K S      + + 
Sbjct: 108 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 167

Query: 128 QANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR 187
                         ++   +                 A  G     + +++     +   
Sbjct: 168 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD-GTIVLYNGVDGTKTGV 226

Query: 188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247
              +S     +  S            +           +   D +I +W++    +  T 
Sbjct: 227 FEDDSLKNVAHSGSVFGLTWSPDGTKI----------ASASADKTIKIWNVATLKVEKTI 276

Query: 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
                     L I  +    +S  A+  I   N +
Sbjct: 277 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.3 bits (110), Expect = 8e-07
 Identities = 39/296 (13%), Positives = 81/296 (27%), Gaps = 32/296 (10%)

Query: 13  VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
           V  GH  ++T +        LF+    G +  WD +     +  +    A  I  + T  
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWD-ISTGISNRVFPDVHATMITGIKTTS 65

Query: 73  SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK----------------- 115
              L        D  +K       G+ S+ ++  K +S                      
Sbjct: 66  KGDLFT---VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 116 --------LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167
                     +     ++    +  K        ++               +   + A  
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227
                      L   ++  ++   S   +   +          +    S S   V +  G
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 228 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG--ISGGADQKIVLYNL 281
             D S++VW++  P      +K     +  ++     N    +S G D  I  +N+
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIK-GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 3e-06
 Identities = 34/271 (12%), Positives = 77/271 (28%), Gaps = 9/271 (3%)

Query: 20  SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV 79
            ++   +++ +  +       E+ I++   ++ V    +      +  V   P    N++
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD--SNRI 66

Query: 80  ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC-YER 138
           ++ G D     W ++         +     +    + +  ++ +A    +     C +E+
Sbjct: 67  VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126

Query: 139 EVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE---VEIWDLNTAE-RCTRLHQNSCG 194
           E    V        +  V +      +V     S      I+     E            
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 186

Query: 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254
             P               +    S     V     D ++ + D        T     L  
Sbjct: 187 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246

Query: 255 VLCLSIDESCNGGISGGADQKIVLYNLDHST 285
           +    I ES    ++ G D   VL+  D + 
Sbjct: 247 LAVTFITESSL--VAAGHDCFPVLFTYDSAA 275

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 8/52 (15%), Positives = 14/52 (26%)

Query: 8  PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
             V  L+ H   VT V +      +    T     +W         +  + 
Sbjct: 41 WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 92

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 11/95 (11%)

Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTVSSSWVHSAAHG 64
              + H A +  V          + +  G L++WD              S +VH +   
Sbjct: 7  ANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 65 IVSVATG---PSIGLNKVISQGRDGTVKCWDIENG 96
           V V       +  L  V +    G +  + I   
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE 99

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 39/290 (13%), Positives = 83/290 (28%), Gaps = 14/290 (4%)

Query: 4   RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
           R        VL+GH   V   C       + +G+    L++W  V  + + +   H+   
Sbjct: 2   RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--G 58

Query: 64  GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123
           G+ S     +I ++    +               L  + S     + +    +S  ++  
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118

Query: 124 ANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ-------LSEVEI 176
                    +  +              D +  V       + V   +       L     
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 178

Query: 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV----NVLAGYEDGS 232
              +       +   S   S        G C+       S + G       +++G  D +
Sbjct: 179 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADST 238

Query: 233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
           + +WDI+      T    +        +  + N  I+   D  + L++L 
Sbjct: 239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 6   PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
              + +  L GH++  + +       IL +G     ++IWD    + +         +  
Sbjct: 205 ETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCL---QTLQGPNKH 259

Query: 66  VSVATGPSIGLNKVISQGRDGTVKCWDIENG 96
            S  T      N VI+   DGTVK WD++ G
Sbjct: 260 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 290

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 17  HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76
           H+  V  V   Q    + +G+    +  WD      +     H  +  ++SVA      L
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS--VISVAVANGSSL 364

Query: 77  ----NKVISQGRDGTVKCWDIE 94
               N   +   D   + W  +
Sbjct: 365 GPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 8   PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA------ 61
                   GH+ SV  V F +    + +G+    +++W+       S S   ++      
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303

Query: 62  ----AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96
                  ++SVAT  +     ++S  +D  V  WD ++G
Sbjct: 304 YIGHKDFVLSVATTQND--EYILSGSKDRGVLFWDKKSG 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 48/299 (16%), Positives = 94/299 (31%), Gaps = 35/299 (11%)

Query: 1   MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
            + + P     +        +  VCF      L  G     +RIWD    + V     H 
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 163

Query: 61  AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL---- 116
                +          +K++S   D TV+ WD+  G  S   S+     +          
Sbjct: 164 QDIYSLDYFPSG----DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219

Query: 117 --------SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168
                   ++                  E   G      S+  ++D       + +    
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG------QSVVSGS 273

Query: 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 228
                V++W+L  A   +     + G         +   ++V A   +       +L+G 
Sbjct: 274 LD-RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV-ATTQNDEY----ILSGS 327

Query: 229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG------ISGGADQKIVLYNL 281
           +D  +L WD ++ G PL  ++ H   V+ +++    + G       +G  D K  ++  
Sbjct: 328 KDRGVLFWDKKS-GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 24/315 (7%), Positives = 71/315 (22%), Gaps = 44/315 (13%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
            +  L GH   V  + +     ++   +   +  +      +   +         +  + 
Sbjct: 45  FLLQLSGHDGGVWALKYAHGGILV---SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 101

Query: 70  TGPSIGLNKVISQGRDGTVKCWDIENGGLSS-------NPSLTIKTNSYHFCKLSLVKEP 122
                 +  +++  RD T+  W +               P +        +    L    
Sbjct: 102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161

Query: 123 YANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA 182
            +    +             T+    +   K      G      +     E +     + 
Sbjct: 162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM 221

Query: 183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV-------------------- 222
           +   R+     G           +   ++                               
Sbjct: 222 DTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH 281

Query: 223 -------------NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS 269
                        N+L    +    ++++R+  +    +    + +  ++         +
Sbjct: 282 TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAA 340

Query: 270 GGADQKIVLYNLDHS 284
              D +  L  LD S
Sbjct: 341 VEKDGQSFLEILDFS 355

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 8e-05
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 25  CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84
                            +R+WD    + V    +     G   V    + G  ++IS   
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSL 316

Query: 85  DGTVKCWDI 93
           DGT+  +++
Sbjct: 317 DGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 44/285 (15%), Positives = 79/285 (27%), Gaps = 24/285 (8%)

Query: 9   DPVAVLRGHRAS-VTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG- 64
            PV    GH +S VT V F   K    L +G   G++ +W     +  +S  V+  +   
Sbjct: 53  PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ 112

Query: 65  -----IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
                I  ++         V+ +GRD        ++G      S   +  +         
Sbjct: 113 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHL----- 167

Query: 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179
                +    +         V           S      +G     V     S   +  +
Sbjct: 168 ---KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV 224

Query: 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239
            +  + +     S             +   + A     SQ F        D +I VWD+ 
Sbjct: 225 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA---TVGADATIRVWDVT 281

Query: 240 NPGIPLTAMKVHLEPVLCLSIDESCNGG---ISGGADQKIVLYNL 281
                +    +  + +    +     G    IS   D  +  Y L
Sbjct: 282 T-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 9e-05
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 5/77 (6%)

Query: 17  HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76
           H + V  + F        +      L  W T    ++  S   S+   ++S         
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS---VLSCDISVD--D 318

Query: 77  NKVISQGRDGTVKCWDI 93
             +++   D     +++
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 33/290 (11%), Positives = 69/290 (23%), Gaps = 27/290 (9%)

Query: 16  GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGP 72
            H   V  V        ++ G   G +++WD         VS     +  + I S    P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 73  SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
                 V  +    ++         + +  + +                    +      
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN- 191
            D + + +       +   S  D+  +G K      +              +        
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227

Query: 192 -----SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN---------------VLAGYEDG 231
                   G              +    P K Q  ++                ++  +D 
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287

Query: 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281
            +  W     G  +   K     VL   I       ++G  D+K  +Y +
Sbjct: 288 LLNAWRTPY-GASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 32/288 (11%), Positives = 73/288 (25%), Gaps = 26/288 (9%)

Query: 11  VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG--IVSV 68
           V + +  +  ++D+    +K +L   +  G L ++     +  +   + S  +   ++  
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK-FDIQAKNVDLLQSLRYKHPLLCC 62

Query: 69  ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
               +      I  G            G  S       + N           +    A  
Sbjct: 63  NFIDNTD--LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120

Query: 129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188
               +    R  G+ V      +S +         M     +        +       + 
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR------LIVGMNNSQVQW 174

Query: 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248
            +       N + +  G+   ++       +          DG + V    + G    + 
Sbjct: 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG-YACSSIDGRVAVEFFDDQGDDYNSS 233

Query: 249 KV--------------HLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
           K                  PV  +          + G+D  I  +NL 
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 5/90 (5%)

Query: 14  LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
                  V  + F      L+   + G +  W+    + + +       +    V    S
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF---NEDSVVKIACS 303

Query: 74  IGLNKVISQGRDGTVKCWDIENGGLSSNPS 103
              N +     D T K     +  +  N S
Sbjct: 304 --DNILCLATSDDTFKTNAAIDQTIELNAS 331

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 37/279 (13%), Positives = 82/279 (29%), Gaps = 40/279 (14%)

Query: 10  PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
              +L GH  SV  + + +   I              TV+   V++  + +         
Sbjct: 47  CKRILTGHTGSVLCLQYDERVIITG--------SSDSTVRVWDVNTGEMLNTLIHHCEAV 98

Query: 70  TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129
                    +++  +D ++  WD+ +    +   + +   +          + Y  +   
Sbjct: 99  LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD--FDDKYIVSASG 156

Query: 130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189
           +     +     E V T +             + +  +G   + + +WD+        L 
Sbjct: 157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVV-SGSSDNTIRLWDIECGACLRVLE 215

Query: 190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN--------P 241
            +            R                   +++G  DG I VWD+           
Sbjct: 216 GHEELVRCIRFDNKR-------------------IVSGAYDGKIKVWDLVAALDPRAPAG 256

Query: 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
            + L  +  H   V  L  DE     +S   D  I++++
Sbjct: 257 TLCLRTLVEHSGRVFRLQFDEFQI--VSSSHDDTILIWD 293

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 9/86 (10%), Positives = 21/86 (24%), Gaps = 8/86 (9%)

Query: 12  AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG 71
             L       +     +           G L  +D    +      V    + +  +   
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK------VTEVKNNLTDLRLS 323

Query: 72  PSIGLNKVISQGRDGTVKCWDIENGG 97
                  V+ +  DG +  + +E   
Sbjct: 324 AD-R-KTVMVRKDDGKIYTFPLEKPE 347

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.73
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.69
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.69
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.61
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.43
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.33
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.31
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.31
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.29
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.17
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.15
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.11
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.05
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.0
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.94
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.92
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.74
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.7
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.59
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.55
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.46
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.33
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.25
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.23
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.19
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.16
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.12
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.66
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.57
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.54
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.27
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.23
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.07
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.78
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.6
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.32
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.3
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.24
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.18
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.05
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.55
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.52
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.1
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.05
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.55
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.94
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.74
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.48
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.35
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.01
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.24
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.11
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.32
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.8
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	84.48
d1q47a_	495	Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]	83.84
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	83.59

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.7e-39  Score=253.51  Aligned_cols=249  Identities=18%  Similarity=0.258  Sum_probs=189.3

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      ++.++|+||+++|++++|+|++++|+||+.||+|+|||+.+++.+..+..|...  |.+++|+|  ++.++++|+.|+.+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~--v~~v~~~~--~~~~l~~~~~d~~i  121 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAYAP--SGNYVACGGLDNIC  121 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSC--EEEEEECT--TSSEEEEEETTCCE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEeccccc--EEeeEeec--cceeeeeeccccee
Confidence            567889999999999999999999999999999999999999999999988855  99999999  99999999999999


Q ss_pred             EEEECCCCCCCCCCccccccc--eEEEEEe----------------------------------------ecccCcccee
Q 022870           89 KCWDIENGGLSSNPSLTIKTN--SYHFCKL----------------------------------------SLVKEPYANA  126 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~--~~~~~~~----------------------------------------~~~~~~~~~~  126 (291)
                      ++|+.............+...  .......                                        ..........
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            999987655433211111110  0000000                                        0000001112


Q ss_pred             ccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCC
Q 022870          127 KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK  202 (291)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  202 (291)
                      ........+|+++...... .+.+|..    ++|+|++..++  +|+.|+.|++||++..+....+...      .    
T Consensus       202 ~~~d~~v~i~d~~~~~~~~-~~~~h~~~i~~v~~~p~~~~l~--s~s~d~~i~~~~~~~~~~~~~~~~~------~----  268 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQ-TFTGHESDINAICFFPNGNAFA--TGSDDATCRLFDLRADQELMTYSHD------N----  268 (340)
T ss_dssp             EETTTEEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEEEECCT------T----
T ss_pred             eecCceEEEEECCCCcEEE-EEeCCCCCeEEEEECCCCCEEE--EEeCCCeEEEEeecccccccccccc------c----
Confidence            2223445556665554332 3445555    89999987554  5667999999999998887776521      1    


Q ss_pred             cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                      ....+.++. |+|+   ++ +|++|+.||.|++||+.+ ++++..+.+|.++|++++|+|++.+|+|||.||.|+|||
T Consensus       269 ~~~~i~~~~-~s~~---~~-~l~~g~~dg~i~iwd~~~-~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         269 IICGITSVS-FSKS---GR-LLLAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCSCEEEEE-ECSS---SC-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccCceEEEE-ECCC---CC-EEEEEECCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            234567776 9998   44 999999999999999998 899999999999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-37  Score=242.12  Aligned_cols=218  Identities=17%  Similarity=0.232  Sum_probs=176.7

Q ss_pred             CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE--EEEeeecCCcceEEEEEeecCCCCeEEEEeC-
Q 022870            8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGR-   84 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-   84 (291)
                      .+..+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++..  ..+..|.  .+|.+++|+|  ++.+|++++. 
T Consensus        48 ~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~v~~s~--d~~~l~~~~~~  123 (311)
T d1nr0a1          48 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS--GPVKDISWDS--ESKRIAAVGEG  123 (311)
T ss_dssp             SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS--SCEEEEEECT--TSCEEEEEECC
T ss_pred             CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccccc--Cccccccccc--ccccccccccc
Confidence            3567788999999999999999999999999999999999887543  4466676  4599999999  9899998876 


Q ss_pred             -CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870           85 -DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY  163 (291)
Q Consensus        85 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                       +..+++|++++++...  .+..+......                                        ++|+|+++++
T Consensus       124 ~~~~~~v~~~~~~~~~~--~l~~h~~~v~~----------------------------------------v~~~~~~~~~  161 (311)
T d1nr0a1         124 RERFGHVFLFDTGTSNG--NLTGQARAMNS----------------------------------------VDFKPSRPFR  161 (311)
T ss_dssp             SSCSEEEEETTTCCBCB--CCCCCSSCEEE----------------------------------------EEECSSSSCE
T ss_pred             ccccccccccccccccc--ccccccccccc----------------------------------------ccccccceee
Confidence             4569999999876543  11111111111                                        5589999876


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      ++ +|+.|+.|++||+++++....+.        +|    ...+.++. |+|+   ++ ++++|+.||.|++||+++ +.
T Consensus       162 l~-sgs~d~~i~i~d~~~~~~~~~~~--------~~----~~~i~~v~-~~p~---~~-~l~~~~~d~~v~~~d~~~-~~  222 (311)
T d1nr0a1         162 II-SGSDDNTVAIFEGPPFKFKSTFG--------EH----TKFVHSVR-YNPD---GS-LFASTGGDGTIVLYNGVD-GT  222 (311)
T ss_dssp             EE-EEETTSCEEEEETTTBEEEEEEC--------CC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-CC
T ss_pred             ec-ccccccccccccccccccccccc--------cc----cccccccc-cCcc---cc-cccccccccccccccccc-cc
Confidence            65 67779999999999999888877        55    34577787 9998   44 899999999999999987 55


Q ss_pred             ceeec-------cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          244 PLTAM-------KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       244 ~~~~~-------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      .+..+       .+|.+.|++++|+|++++|++|+.||.|+|||++++++++++
T Consensus       223 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  276 (311)
T ss_dssp             EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            54443       468899999999999999999999999999999999988764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-37  Score=242.90  Aligned_cols=246  Identities=17%  Similarity=0.291  Sum_probs=176.5

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeec----------------
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS----------------   73 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------   73 (291)
                      ..++|+||+++|++|+|+|++++|+||+.||+|+|||+++++++.++..|...  |.+++|+|.                
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~--V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS--VQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSC--EEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCc--EEEEeeecccccccccccccccccc
Confidence            45689999999999999999999999999999999999999888888776644  666666650                


Q ss_pred             ------------------------CCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccC
Q 022870           74 ------------------------IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA  129 (291)
Q Consensus        74 ------------------------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (291)
                                              .+++.+++++.|+.+++||+++++...  .+..+........+..... .......
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~l~~~~~  163 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK--TFTGHREWVRMVRPNQDGT-LIASCSN  163 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE--EEECCSSCEEEEEECTTSS-EEEEEET
T ss_pred             cccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeee--EEccCCCcceeeecccCCC-EEEEEeC
Confidence                                    044567777777888888877665432  1222222223333322221 1222233


Q ss_pred             CCCceeeecccCccccccCCCCCC----cccCCCC-------------------CcEEEEecCCcCeEEEEeCCCcceee
Q 022870          130 NEPKDCYEREVGETVDTDSLCDSK----DDVPAEG-------------------PKYMAVAGEQLSEVEIWDLNTAERCT  186 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------------------~~~~~~~g~~d~~i~~wd~~~~~~~~  186 (291)
                      .+....++......... +..+..    ++++|++                   ..+++ +|+.|+.|++||+++++++.
T Consensus       164 d~~v~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~  241 (317)
T d1vyhc1         164 DQTVRVWVVATKECKAE-LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMCLM  241 (317)
T ss_dssp             TSCEEEEETTTCCEEEE-ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE-EEETTSEEEEEETTTTEEEE
T ss_pred             CCeEEEEeeccceeeEE-EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE-eccCCCEEEEEECCCCcEEE
Confidence            44455565554432221 112221    2333322                   12333 67779999999999999999


Q ss_pred             EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCe
Q 022870          187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG  266 (291)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  266 (291)
                      .+.        +|.    ..+.++. |+|+   ++ +|++|+.||.|++||+++ ++++..+.+|.+.|++++|+|++++
T Consensus       242 ~~~--------~~~----~~v~~~~-~~~~---~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~V~~~~~s~~~~~  303 (317)
T d1vyhc1         242 TLV--------GHD----NWVRGVL-FHSG---GK-FILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPY  303 (317)
T ss_dssp             EEE--------CCS----SCEEEEE-ECSS---SS-CEEEEETTTEEEEECCTT-SCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             EEe--------CCC----CCEEEEE-ECCC---CC-EEEEEECCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCE
Confidence            888        663    4567776 9998   44 899999999999999998 8899999999999999999999999


Q ss_pred             eEEecCCCeEEEEE
Q 022870          267 GISGGADQKIVLYN  280 (291)
Q Consensus       267 l~s~s~dg~i~vw~  280 (291)
                      |++|+.||+|+|||
T Consensus       304 l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         304 VVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEETTSEEEEEC
T ss_pred             EEEEeCCCeEEEeC
Confidence            99999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-36  Score=237.48  Aligned_cols=250  Identities=17%  Similarity=0.209  Sum_probs=184.0

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe---EEEEE--eeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      .+.++ +|...|++++|+|+|++|++|+ ||.|+|||+.++.   .+..+  ..|.  .+|.+++|+|  ++++|++|+.
T Consensus        44 ~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~--~~I~~v~~s~--dg~~l~s~~~  117 (337)
T d1gxra_          44 QINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD--NYIRSCKLLP--DGCTLIVGGE  117 (337)
T ss_dssp             EEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT--SBEEEEEECT--TSSEEEEEES
T ss_pred             EEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCC--CcEEEEEEcC--CCCEEEEeec
Confidence            34455 6999999999999999999997 8999999987643   22222  3454  5599999999  9999999999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCC
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG  160 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  160 (291)
                      ||.|++||+.............+........+.+... .............+++....... ....|..    ++|++++
T Consensus       118 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~-~~~~~~~~v~~l~~s~~~  195 (337)
T d1gxra_         118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc-cccccccccccccccccc
Confidence            9999999988654321111122223333333333221 12223344556677776655433 2333433    8899998


Q ss_pred             CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      ..++  +|+.|+.+++||+++++.+..+.             ....+.++. |+|+   ++ +|++|+.||.|++||+++
T Consensus       196 ~~~~--~~~~d~~v~i~d~~~~~~~~~~~-------------~~~~i~~l~-~~~~---~~-~l~~~~~d~~i~i~d~~~  255 (337)
T d1gxra_         196 TKLW--TGGLDNTVRSWDLREGRQLQQHD-------------FTSQIFSLG-YCPT---GE-WLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             SEEE--EEETTSEEEEEETTTTEEEEEEE-------------CSSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTS
T ss_pred             cccc--cccccccccccccccceeecccc-------------cccceEEEE-Eccc---cc-ccceeccccccccccccc
Confidence            7655  46668999999999998887765             244677887 9998   44 899999999999999997


Q ss_pred             CCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                       ... .....|...|++++|+|++++|++++.||.|++||+.+++.+..
T Consensus       256 -~~~-~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~  302 (337)
T d1gxra_         256 -PDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             -SCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             -ccc-ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence             443 45667999999999999999999999999999999999988754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.6e-36  Score=234.19  Aligned_cols=250  Identities=14%  Similarity=0.170  Sum_probs=177.9

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe-eecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      +..+++.||+++|++++|+|++++|+||+.||+|++||+++++++..+. .|.  .+|.+++|+|  ++ .+++++.|+.
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~--~~v~~v~~~~--~g-~~~~~~~d~~   77 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA--TMITGIKTTS--KG-DLFTVSWDDH   77 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS--SCEEEEEECT--TS-CEEEEETTTE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC--CcEEEEEeec--cc-eeecccceee
Confidence            5678999999999999999999999999999999999999999888774 465  4599999999  85 4667788999


Q ss_pred             EEEEECCCCCCCCCCcc-ccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEE
Q 022870           88 VKCWDIENGGLSSNPSL-TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYM  164 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  164 (291)
                      +++|+............ ...........++...  .............|+..  +.. .....+..  ++|+|++..++
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g--~~~~~~~~~~i~~~~~~--~~~-~~~~~~~~~~~~~s~~~~~l~  152 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG--DIAVAACYKHIAIYSHG--KLT-EVPISYNSSCVALSNDKQFVA  152 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS--SCEEEEESSEEEEEETT--EEE-EEECSSCEEEEEECTTSCEEE
T ss_pred             EEEeccCCcccccccccccccccccccccccccc--ccccccccccccccccc--ccc-ccccccccccccccccccccc
Confidence            99999876543221111 1111222222233222  11122222223333321  111 11122222  88999987554


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                        +|+.|+.|++||+++++.......       .|    ...+.++. |+|+   ++ +|++++.||.|++||+.+ +..
T Consensus       153 --~g~~dg~i~~~d~~~~~~~~~~~~-------~~----~~~i~~~~-~~~~---~~-~l~~~~~d~~i~~~~~~~-~~~  213 (299)
T d1nr0a2         153 --VGGQDSKVHVYKLSGASVSEVKTI-------VH----PAEITSVA-FSNN---GA-FLVATDQSRKVIPYSVAN-NFE  213 (299)
T ss_dssp             --EEETTSEEEEEEEETTEEEEEEEE-------EC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEEGGG-TTE
T ss_pred             --cccccccccccccccccccccccc-------cc----cccccccc-cccc---cc-cccccccccccccccccc-ccc
Confidence              566799999999988765443321       33    34577787 9998   44 899999999999999987 433


Q ss_pred             ---eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870          245 ---LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       245 ---~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                         ...+.+|...|++++|+|++++|++|+.||.|++||+++++..
T Consensus       214 ~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         214 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             ccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcc
Confidence               3456789999999999999999999999999999999886543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-34  Score=232.54  Aligned_cols=259  Identities=19%  Similarity=0.221  Sum_probs=182.5

Q ss_pred             cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeec----------------CCcceEEEEEeecCCCCe
Q 022870           15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS----------------AAHGIVSVATGPSIGLNK   78 (291)
Q Consensus        15 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~~   78 (291)
                      .+|++.|+||+|+|+|++||+|+ |++|+|||+.+++.+..+..+.                +...|.+++|+|  ++++
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~~~~  135 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DGKF  135 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT--TSSE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC--CCCc
Confidence            36999999999999999999987 8999999999988877664321                224599999999  9999


Q ss_pred             EEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--ccc
Q 022870           79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDV  156 (291)
Q Consensus        79 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  156 (291)
                      |++|+.||.|++||...++...  ....+........+.... .........+....|+................  +.+
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~--~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  212 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVM--ILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV  212 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             ceeccccccccccccccccccc--cccccccccccccccccc-ccccccccceeeeeeeccccccccccccccccccccc
Confidence            9999999999999998876533  222223333333333222 12223334455666776655443332222222  555


Q ss_pred             CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW  236 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw  236 (291)
                      .+....+++ +|+.|+.|++||.+++.....+....     .........+.++. |+|+   ++ +|++|+.||.|++|
T Consensus       213 ~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~l~-~s~~---~~-~l~s~~~d~~i~iw  281 (388)
T d1erja_         213 SPGDGKYIA-AGSLDRAVRVWDSETGFLVERLDSEN-----ESGTGHKDSVYSVV-FTRD---GQ-SVVSGSLDRSVKLW  281 (388)
T ss_dssp             CSTTCCEEE-EEETTSCEEEEETTTCCEEEEEC-----------CCCSSCEEEEE-ECTT---SS-EEEEEETTSEEEEE
T ss_pred             cCCCCCeEE-EEcCCCeEEEeecccCccceeecccc-----ccccCCCCCEEEEE-ECCC---CC-EEEEEECCCcEEEE
Confidence            554445555 56679999999999998877765311     11111245678887 9998   44 89999999999999


Q ss_pred             EccCCC-----------CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          237 DIRNPG-----------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       237 d~~~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      |+++..           ........|...|++++|+|++++|++|+.||.|++||+++++.++++
T Consensus       282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l  346 (388)
T d1erja_         282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  346 (388)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            997622           123445578899999999999999999999999999999999987654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.1e-35  Score=233.72  Aligned_cols=214  Identities=12%  Similarity=0.157  Sum_probs=165.2

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE   94 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~   94 (291)
                      +.++|+|++|+|+|++||+|+.||.|+|||.++++  .+..+++|..+  |.+++|+|  ++++|++|+.|++|++||+.
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~--V~~l~fsp--~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ--VTGVDWAP--DSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC--EEEEEEET--TTTEEEEEETTSCEEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCC--EEEEEECC--CCCEEEEEECCCeEEEEeec
Confidence            35789999999999999999999999999998775  56677888755  99999999  99999999999999999998


Q ss_pred             CCCCCCCCccccccce-EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCe
Q 022870           95 NGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (291)
Q Consensus        95 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  173 (291)
                      ++....  ......+. ...+                                       ++|+|+++.++  +|+.|+.
T Consensus        82 ~~~~~~--~~~~~~~~~~v~~---------------------------------------i~~~p~~~~l~--~~s~d~~  118 (371)
T d1k8kc_          82 GRTWKP--TLVILRINRAARC---------------------------------------VRWAPNEKKFA--VGSGSRV  118 (371)
T ss_dssp             TTEEEE--EEECCCCSSCEEE---------------------------------------EEECTTSSEEE--EEETTSS
T ss_pred             cccccc--ccccccccccccc---------------------------------------cccccccccce--eecccCc
Confidence            664321  11111110 0011                                       56999987655  5667899


Q ss_pred             EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC------------
Q 022870          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP------------  241 (291)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~------------  241 (291)
                      +++|++..........        .........+.++. |+|+   ++ +|++|+.||.|++||....            
T Consensus       119 i~i~~~~~~~~~~~~~--------~~~~~~~~~v~~v~-~~p~---~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~  185 (371)
T d1k8kc_         119 ISICYFEQENDWWVCK--------HIKKPIRSTVLSLD-WHPN---SV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWG  185 (371)
T ss_dssp             EEEEEEETTTTEEEEE--------EECTTCCSCEEEEE-ECTT---SS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred             ceeeeeeccccccccc--------cccccccccccccc-cccc---cc-ceeccccCcEEEEEeeccCcccccccccccc
Confidence            9999987765443332        11122355678887 9998   44 8999999999999998642            


Q ss_pred             -----CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          242 -----GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       242 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                           +..+....+|...|.+++|+|++++|++++.|+.|++||+++++.+..+
T Consensus       186 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~  239 (371)
T d1k8kc_         186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  239 (371)
T ss_dssp             SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             ccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee
Confidence                 1234556788899999999999999999999999999999998877653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-34  Score=223.72  Aligned_cols=240  Identities=16%  Similarity=0.197  Sum_probs=181.1

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC--eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      .....+|.+.|++++|+|++++|++|+.||.|++||+...  +....+..|...  +.+++|+|  ++.++++++.|+.|
T Consensus        90 ~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~s~~~d~~i  165 (337)
T d1gxra_          90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA--CYALAISP--DSKVCFSCCSDGNI  165 (337)
T ss_dssp             EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC--EEEEEECT--TSSEEEEEETTSCE
T ss_pred             EeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccc--cccccccc--cccccccccccccc
Confidence            3345689999999999999999999999999999998754  455666666644  99999999  99999999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM  164 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  164 (291)
                      ++||+.+++...  ....+........++..... .......+...+|+++..+.....  .+..    ++|+|++..++
T Consensus       166 ~~~~~~~~~~~~--~~~~~~~~v~~l~~s~~~~~-~~~~~~d~~v~i~d~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~  240 (337)
T d1gxra_         166 AVWDLHNQTLVR--QFQGHTDGASCIDISNDGTK-LWTGGLDNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLA  240 (337)
T ss_dssp             EEEETTTTEEEE--EECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccc--cccccccccccccccccccc-cccccccccccccccccceeeccc--ccccceEEEEEcccccccc
Confidence            999999876533  22222333333333333222 222333455667777666543322  1222    88999987655


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                        +|+.|+.+++||+++++.....         .|    ...+.++. |+|+   ++ +|++|+.||.|++||+.+ +++
T Consensus       241 --~~~~d~~i~i~d~~~~~~~~~~---------~~----~~~i~~v~-~s~~---g~-~l~s~s~Dg~i~iwd~~~-~~~  299 (337)
T d1gxra_         241 --VGMESSNVEVLHVNKPDKYQLH---------LH----ESCVLSLK-FAYC---GK-WFVSTGKDNLLNAWRTPY-GAS  299 (337)
T ss_dssp             --EEETTSCEEEEETTSSCEEEEC---------CC----SSCEEEEE-ECTT---SS-EEEEEETTSEEEEEETTT-CCE
T ss_pred             --eecccccccccccccccccccc---------cc----ccccceEE-ECCC---CC-EEEEEeCCCeEEEEECCC-CCE
Confidence              5666899999999988765433         34    34577787 9998   44 899999999999999998 777


Q ss_pred             eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      +..+. |...|++++|+|++++|++|+.||+|+|||+
T Consensus       300 ~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         300 IFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            76654 7889999999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-34  Score=230.39  Aligned_cols=254  Identities=21%  Similarity=0.345  Sum_probs=178.2

Q ss_pred             ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870           14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI   93 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~   93 (291)
                      ..+|...|++++|+|++++|++|+.||.|++||...++.+..+.+|...  |.++.+++  ++..+++++.++.+++||.
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~~~~~~~~~~i~~~d~  192 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD--IYSLDYFP--SGDKLVSGSGDRTVRIWDL  192 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred             ccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccc--cccccccc--ccccccccccceeeeeeec
Confidence            4468888999999999999999999999999999999999999888855  99999999  8899999999999999999


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccc------cCCCCCC----cccCCCCCcE
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT------DSLCDSK----DDVPAEGPKY  163 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~----~~~~~~~~~~  163 (291)
                      ++.....  ..... .......+..............+...+++.........      ...+|..    ++|+|++..+
T Consensus       193 ~~~~~~~--~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  269 (388)
T d1erja_         193 RTGQCSL--TLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV  269 (388)
T ss_dssp             TTTEEEE--EEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred             ccccccc--ccccc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEE
Confidence            8765432  11111 12222222222222233334455666777665543221      2234444    8899998765


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      +  +|+.|+.|++||+++++.......................+.++. |+|+   ++ +|++|+.||.|++||+++ ++
T Consensus       270 ~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~---~~-~l~sg~~dg~i~vwd~~~-~~  341 (388)
T d1erja_         270 V--SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA-TTQN---DE-YILSGSKDRGVLFWDKKS-GN  341 (388)
T ss_dssp             E--EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE-ECGG---GC-EEEEEETTSEEEEEETTT-CC
T ss_pred             E--EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEE-ECCC---CC-EEEEEeCCCEEEEEECCC-Cc
Confidence            4  566799999999987654433221000000000001244577787 9998   44 999999999999999998 89


Q ss_pred             ceeeccccccceeEEEe------ecCCCeeEEecCCCeEEEEEcC
Q 022870          244 PLTAMKVHLEPVLCLSI------DESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       244 ~~~~~~~h~~~v~~~~~------~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      ++..+++|.+.|+++++      +|++.+||||+.||+|+||+++
T Consensus       342 ~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         342 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99999999999999975      6789999999999999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.8e-35  Score=223.93  Aligned_cols=243  Identities=19%  Similarity=0.229  Sum_probs=171.9

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +++++|+||.++|++++|+|    |+||+.||+|++||+.++     ...|...  |.++++++  + ..+++++.|++|
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~--V~~~~~~~--~-~~~~s~s~D~~v   69 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNL--IVSLDNSK--A-QEYSSISWDDTL   69 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSC--EEEEECCS--T-TCCEEEETTTEE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCC--EEEEEecC--C-CeEEEEeecccc
Confidence            67899999999999999987    999999999999998753     2467654  99999987  5 678999999999


Q ss_pred             EEEECCCCCCCCCCcc-cccc--------------------c-eE-------EEEEeecccCccceeccCCCCceeeecc
Q 022870           89 KCWDIENGGLSSNPSL-TIKT--------------------N-SY-------HFCKLSLVKEPYANAKQANEPKDCYERE  139 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~-~~~~--------------------~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (291)
                      ++|++...+...++.. ....                    . ..       ....+.+...........+.....|++.
T Consensus        70 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~  149 (287)
T d1pgua2          70 KVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS  149 (287)
T ss_dssp             EETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred             ccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeecc
Confidence            9999875433221100 0000                    0 00       0011111111112222233445666665


Q ss_pred             cCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecC
Q 022870          140 VGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP  215 (291)
Q Consensus       140 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  215 (291)
                      ...........+..    ++|+|++.+++  +|+.||.|++||+.+++.......       +|    ...+.++. |+|
T Consensus       150 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~g~~dg~i~i~d~~~~~~~~~~~~-------~h----~~~v~~~~-~~p  215 (287)
T d1pgua2         150 DLEVSFDLKTPLRAKPSYISISPSETYIA--AGDVMGKILLYDLQSREVKTSRWA-------FR----TSKINAIS-WKP  215 (287)
T ss_dssp             EEEEEEECSSCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEECCSC-------CC----SSCEEEEE-ECC
T ss_pred             ccceeeeeeeccCCceeEEEeccCccccc--cccccccccceeeccccccccccc-------cc----ccccceee-ecc
Confidence            54443333333333    89999997655  567799999999998876544321       45    34567776 888


Q ss_pred             CC-------CCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870          216 SK-------SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       216 ~~-------~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      ..       .++. +|++|+.|+.|++||++++.+.+..+.+|...|++++|+|++ .|++++.||.|++|++
T Consensus       216 ~~~~~~~~~~~~~-~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         216 AEKGANEEEIEED-LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CC------CCSCC-EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             cccccccccCCCC-eeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            63       2244 899999999999999988677888899999999999999987 4889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-33  Score=218.76  Aligned_cols=250  Identities=18%  Similarity=0.335  Sum_probs=174.9

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      +.++.++|+||++.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...  |.+++|+|    ++|++++.|+
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~--V~~v~~~~----~~l~s~s~D~   77 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG--VWSSQMRD----NIIISGSTDR   77 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSC--EEEEEEET----TEEEEEETTS
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCC--EEEEEeCC----Cccccceecc
Confidence            34778899999999865 36667899999999999999999999999999999855  99999988    5999999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEE-----------------EEeec--------------------ccCccceeccC
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHF-----------------CKLSL--------------------VKEPYANAKQA  129 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~--------------------~~~~~~~~~~~  129 (291)
                      .+++|+........  ...........                 ..+..                    ...........
T Consensus        78 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d2ovrb2          78 TLKVWNAETGECIH--TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY  155 (342)
T ss_dssp             CEEEEETTTTEEEE--EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred             ccccccccccccee--cccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecC
Confidence            99999987654321  00000000000                 00000                    00001111122


Q ss_pred             CCCceeeecccCccccccCCCCCC--cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceee
Q 022870          130 NEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC  207 (291)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (291)
                      ......++....... ..+.+|..  ..+.+++..++  +|+.||.|++||++.++++..+.        +|.    ..+
T Consensus       156 d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~l~--s~~~dg~i~~~d~~~~~~~~~~~--------~~~----~~v  220 (342)
T d2ovrb2         156 DFMVKVWDPETETCL-HTLQGHTNRVYSLQFDGIHVV--SGSLDTSIRVWDVETGNCIHTLT--------GHQ----SLT  220 (342)
T ss_dssp             TSCEEEEEGGGTEEE-EEECCCSSCEEEEEECSSEEE--EEETTSCEEEEETTTCCEEEEEC--------CCC----SCE
T ss_pred             CCeEEEeecccceee-EEEcCcccccccccCCCCEEE--EEeCCCeEEEeecccceeeeEec--------ccc----cce
Confidence            233444444433322 23344444  55666766544  67779999999999999888887        553    345


Q ss_pred             eeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc---cccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       208 ~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      .++. ++++      +|++|+.||.|++||+.. .+....+..   |...+.++.++++  ++++|+.||.|++||++++
T Consensus       221 ~~~~-~~~~------~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~s~Dg~i~iwd~~tg  290 (342)
T d2ovrb2         221 SGME-LKDN------ILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTG  290 (342)
T ss_dssp             EEEE-EETT------EEEEEETTSCEEEEETTT-CCEEEEECSTTSCSSCEEEEEECSS--EEEEEETTSEEEEEETTTC
T ss_pred             eEEe-cCCC------EEEEEcCCCEEEEEeccc-ccccccccccceeeeceeecccCCC--eeEEEcCCCEEEEEECCCC
Confidence            5555 6654      999999999999999987 666655554   5567777777665  8999999999999999999


Q ss_pred             ceeeee
Q 022870          285 TVSHCV  290 (291)
Q Consensus       285 ~~~~~~  290 (291)
                      ++++++
T Consensus       291 ~~i~~~  296 (342)
T d2ovrb2         291 EFIRNL  296 (342)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            988764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.6e-33  Score=215.61  Aligned_cols=211  Identities=15%  Similarity=0.107  Sum_probs=171.2

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      +++.+.+++++|+|+.|+.+. ++.|.+||+++.+....+.+|...  |++++|+|  +|++|++|+.||+|++||+.+.
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~--v~~~~~sp--~g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQ--TTVAKTSP--SGYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSC--EEEEEECT--TSSEEEEEETTSEEEEEESSST
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCC--EEEEEEeC--CCCeEeccccCceEeeeeeecc
Confidence            556677899999999999875 567999999999888889888855  99999999  9999999999999999999987


Q ss_pred             CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870           97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~  176 (291)
                      +......+..+..... +                                       ++|+|++..+++++.+.+..+++
T Consensus        91 ~~~~~~~~~~~~~~v~-~---------------------------------------v~~s~d~~~l~~~~~~~~~~~~v  130 (311)
T d1nr0a1          91 THILKTTIPVFSGPVK-D---------------------------------------ISWDSESKRIAAVGEGRERFGHV  130 (311)
T ss_dssp             TCCEEEEEECSSSCEE-E---------------------------------------EEECTTSCEEEEEECCSSCSEEE
T ss_pred             ccccccccccccCccc-c---------------------------------------ccccccccccccccccccccccc
Confidence            5432111111111111 1                                       56999998777654445677999


Q ss_pred             EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccccee
Q 022870          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (291)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (291)
                      ||+++++....+.        +|.    ..+.++. |+|+   ++..|++|+.||.|++||+++ .+....+..|..+|+
T Consensus       131 ~~~~~~~~~~~l~--------~h~----~~v~~v~-~~~~---~~~~l~sgs~d~~i~i~d~~~-~~~~~~~~~~~~~i~  193 (311)
T d1nr0a1         131 FLFDTGTSNGNLT--------GQA----RAMNSVD-FKPS---RPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVH  193 (311)
T ss_dssp             EETTTCCBCBCCC--------CCS----SCEEEEE-ECSS---SSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEE
T ss_pred             ccccccccccccc--------ccc----ccccccc-cccc---ceeeecccccccccccccccc-ccccccccccccccc
Confidence            9999988887776        663    3567776 9998   443689999999999999998 888899999999999


Q ss_pred             EEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          257 CLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       257 ~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      ++.|+|++++|++++.||.|++||+++++.+..
T Consensus       194 ~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~  226 (311)
T d1nr0a1         194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV  226 (311)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ccccCcccccccccccccccccccccccccccc
Confidence            999999999999999999999999998876654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.2e-32  Score=212.96  Aligned_cols=247  Identities=18%  Similarity=0.273  Sum_probs=174.3

Q ss_pred             eEEecCCccce-eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           11 VAVLRGHRASV-TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        11 ~~~l~~h~~~v-~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      ..+|+||.+.| +|++|  ++++|+||+.||+|+|||+.+++++.++.+|...  |.+++|+|  + ++|++|+.|++|+
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~--V~~l~~s~--~-~~l~s~s~D~~i~   77 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG--VWALKYAH--G-GILVSGSTDRTVR   77 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSC--EEEEEEET--T-TEEEEEETTCCEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCC--EEEEEEcC--C-CEEEEEecccccc
Confidence            56799999886 66665  5789999999999999999999999999999855  99999998  6 7899999999999


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeeccc-CccceeccCCCCceeeecccCccccccCC-------------------
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSL-------------------  149 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  149 (291)
                      +|+....+...  .................. ..........+...+|++...........                   
T Consensus        78 iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d1nexb2          78 VWDIKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  155 (355)
T ss_dssp             EEETTTTEEEE--EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred             ccccccccccc--ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence            99998876432  111111111111111111 11122233344556666554332211110                   


Q ss_pred             ---CCCC--cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEE
Q 022870          150 ---CDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (291)
Q Consensus       150 ---~~~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l  224 (291)
                         .|..  ..+.+++..++  ++..|+.+++||+++++.+....        ++.    ....++. |+|.+   . ++
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~--~~~~d~~i~~~d~~~~~~~~~~~--------~~~----~~~~~~~-~~~~~---~-~~  216 (355)
T d1nexb2         156 VLRGHMASVRTVSGHGNIVV--SGSYDNTLIVWDVAQMKCLYILS--------GHT----DRIYSTI-YDHER---K-RC  216 (355)
T ss_dssp             EEECCSSCEEEEEEETTEEE--EEETTSCEEEEETTTTEEEEEEC--------CCS----SCEEEEE-EETTT---T-EE
T ss_pred             eeeeccccccccccccceee--eecccceeeeeecccccceeeee--------ccc----ccccccc-ccccc---e-ee
Confidence               0111  23345554433  56678999999999998887776        332    2345555 88874   3 89


Q ss_pred             EeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      ++++.|+.|++||+++ +..+..+.+|...|.+++|+++  +|++++.||.|++||+++.....
T Consensus       217 ~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~  277 (355)
T d1nexb2         217 ISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSRKF  277 (355)
T ss_dssp             EEEETTSCEEEEETTT-CCEEEEECCCSSCCCEEEECSS--EEEEECTTSEEEEEETTTCCEEE
T ss_pred             ecccccceEEeeeccc-cccccccccccccccccccccc--eeeeeecccccccccccccceec
Confidence            9999999999999998 8899999999999999999865  89999999999999999876543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-32  Score=218.44  Aligned_cols=222  Identities=16%  Similarity=0.087  Sum_probs=160.8

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEE--eeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .+..|++|.++|++++|+|++++|++|+.|++|+|||+.++.....+  ..|.  .+|.+++|+|  +++.|++++.|++
T Consensus        43 ~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~--~~v~~i~~~p--~~~~l~~~s~d~~  118 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN--RAARCVRWAP--NEKKFAVGSGSRV  118 (371)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS--SCEEEEEECT--TSSEEEEEETTSS
T ss_pred             EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccc--cccccccccc--ccccceeecccCc
Confidence            56788999999999999999999999999999999999877655444  4454  5599999999  9999999999999


Q ss_pred             EEEEECCCCCCCCCCccccccce-EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV  166 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (291)
                      |++|+++................ ...+                                       ++|+|++..++  
T Consensus       119 i~i~~~~~~~~~~~~~~~~~~~~~~v~~---------------------------------------v~~~p~~~~l~--  157 (371)
T d1k8kc_         119 ISICYFEQENDWWVCKHIKKPIRSTVLS---------------------------------------LDWHPNSVLLA--  157 (371)
T ss_dssp             EEEEEEETTTTEEEEEEECTTCCSCEEE---------------------------------------EEECTTSSEEE--
T ss_pred             ceeeeeeccccccccccccccccccccc---------------------------------------cccccccccee--
Confidence            99999886543110000000000 0000                                       56999987554  


Q ss_pred             ecCCcCeEEEEeCCCcceeeEecccccCCC------CCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGS------PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      +|+.|+.+++||+.................      ..........+.+++ |+|+   |+ +|++++.||.|++||+++
T Consensus       158 s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~---g~-~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         158 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC-FSAN---GS-RVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE-ECSS---SS-EEEEEETTTEEEEEEGGG
T ss_pred             ccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEE-eecc---cc-cccccccCCcceEEeeec
Confidence            677799999999876432111110000000      000011244577787 9998   44 899999999999999998


Q ss_pred             CCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                       ++.+..+..|..+|.+++|+|++.+|++|+ |+.+++|..+.
T Consensus       233 -~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         233 -KMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             -TTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEET
T ss_pred             -ccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeC
Confidence             888999999999999999999998887765 77777766543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.5e-33  Score=216.71  Aligned_cols=261  Identities=13%  Similarity=0.079  Sum_probs=171.0

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEE---EEeeecCCcceEEEEEeecCC-CCeEEEEeC
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS---SSWVHSAAHGIVSVATGPSIG-LNKVISQGR   84 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~   84 (291)
                      +.+..+++|++.|++|+|+|++++||+|+.||+|+|||++++....   ....|.  .+|.+++|+|  + +.+|++|+.
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~--~~V~~v~f~~--~~~~~l~sg~~   77 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK--HPLLCCNFID--NTDLQIYVGTV   77 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS--SCEEEEEEEE--SSSEEEEEEET
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCC--CCEEEEEEeC--CCCCEEEEccc
Confidence            3567789999999999999999999999999999999987654322   223466  4599999998  5 357899999


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcccc---ccCCCCCC------cc
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD---TDSLCDSK------DD  155 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~  155 (291)
                      ||.|++|++.......  .................................|+++......   .....+..      ..
T Consensus        78 d~~v~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQ--ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT  155 (342)
T ss_dssp             TSCEEEECSSSSSSEE--ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred             ccceeeeecccccccc--cccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeee
Confidence            9999999998765432  1111111111111122222223333444555666654332111   11111111      44


Q ss_pred             cCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870          156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV  235 (291)
Q Consensus       156 ~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v  235 (291)
                      +.+.+..++  +++.|+.|++||++..+.........     .    ......+.. +.|..  +. .+++++.||.+.+
T Consensus       156 ~~~~~~~~~--~~~~d~~i~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~-~~~~~--~~-~~~~~s~dg~~~v  220 (342)
T d1yfqa_         156 MDTNSSRLI--VGMNNSQVQWFRLPLCEDDNGTIEES-----G----LKYQIRDVA-LLPKE--QE-GYACSSIDGRVAV  220 (342)
T ss_dssp             EEECSSEEE--EEESTTEEEEEESSCCTTCCCEEEEC-----S----CSSCEEEEE-ECSGG--GC-EEEEEETTSEEEE
T ss_pred             eeccCCcee--eecCCCcEEEEecccCcccceeeeec-----c----cccceeeeE-eecCC--CC-EEEeecCCCeEEE
Confidence            556665544  56679999999998776544332100     1    122233333 44431  33 8999999999999


Q ss_pred             EEccCCCCc--------------eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          236 WDIRNPGIP--------------LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       236 wd~~~~~~~--------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      |+.......              ......|...|++++|+|++++|+||+.||.|++||+++++.+.++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             EEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence            998752211              1122356678999999999999999999999999999999988764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-31  Score=209.28  Aligned_cols=250  Identities=14%  Similarity=0.165  Sum_probs=178.5

Q ss_pred             CceEEecCC-ccceeEEEEcC--CCCEEEEecCCCeEEEEeCCCCeE--------EEEEeeecCCcceEEEEEeecCCCC
Q 022870            9 DPVAVLRGH-RASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRT--------VSSSWVHSAAHGIVSVATGPSIGLN   77 (291)
Q Consensus         9 ~~~~~l~~h-~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~   77 (291)
                      ..+..+.+| ...|++++|+|  ++.+|++|+.||+|+|||+..++.        ...+..|.  .+|.+++|++  ++.
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~s~--~~~  128 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA--GPISDISWDF--EGR  128 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS--SCEEEEEECT--TSS
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccccccc--CcEEEEEECC--CCC
Confidence            446677887 46899999998  678999999999999999865432        12234455  4599999999  989


Q ss_pred             eEEEEeC--CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccc--cCCCCCC
Q 022870           78 KVISQGR--DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT--DSLCDSK  153 (291)
Q Consensus        78 ~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  153 (291)
                      ++++++.  ++.+++|+.++++...  .+..+......+.+.+............+...+|+....+....  ....|..
T Consensus       129 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~  206 (325)
T d1pgua1         129 RLCVVGEGRDNFGVFISWDSGNSLG--EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGS  206 (325)
T ss_dssp             EEEEEECCSSCSEEEEETTTCCEEE--ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTC
T ss_pred             ccceeeccccceEEEEeecccccce--eeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCC
Confidence            8887654  6789999998876543  22223344455555544433333444556677777765543332  2334443


Q ss_pred             ----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC
Q 022870          154 ----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (291)
Q Consensus       154 ----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (291)
                          ++|+|++..+++ +++.|+.|++||+++++.+..+.        +|.......++++. |. +   |+ +|++++.
T Consensus       207 ~v~~v~~~pd~~~~l~-s~~~d~~i~iwd~~~~~~~~~l~--------~~~~~v~~~~~s~~-~~-d---g~-~l~s~s~  271 (325)
T d1pgua1         207 FVRDVEFSPDSGEFVI-TVGSDRKISCFDGKSGEFLKYIE--------DDQEPVQGGIFALS-WL-D---SQ-KFATVGA  271 (325)
T ss_dssp             CEEEEEECSTTCCEEE-EEETTCCEEEEETTTCCEEEECC--------BTTBCCCSCEEEEE-ES-S---SS-EEEEEET
T ss_pred             ccEEeeeccccceecc-ccccccceeeeeecccccccccc--------ccccccccceeeee-cc-C---CC-EEEEEeC
Confidence                889998766666 45569999999999999998888        67666666666654 54 3   44 8999999


Q ss_pred             CCcEEEEEccCCCCceeeccccccc--eeEEE--eecCCCeeEEecCCCeEEEEEc
Q 022870          230 DGSILVWDIRNPGIPLTAMKVHLEP--VLCLS--IDESCNGGISGGADQKIVLYNL  281 (291)
Q Consensus       230 dg~i~vwd~~~~~~~~~~~~~h~~~--v~~~~--~~~~~~~l~s~s~dg~i~vw~~  281 (291)
                      |+.|+|||+++ ++++..+..|...  +..++  |.+++ +|+++|.||.|++||+
T Consensus       272 D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         272 DATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred             CCeEEEEECCC-CCEEEEEEecCCcccCeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence            99999999998 8888877765543  33444  44444 6899999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-30  Score=209.71  Aligned_cols=261  Identities=17%  Similarity=0.203  Sum_probs=168.6

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE------EEEEeeecCCcceEEEEE---eec--CCCCeE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT------VSSSWVHSAAHGIVSVAT---GPS--IGLNKV   79 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~v~~~~~---~~~--~~~~~l   79 (291)
                      ....++|.+.|+++++++  ++++||+.|++|+|||..+.+.      ......|.  ..+..+..   .+.  .++.++
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK--SGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT--TCEEEEEEEEEEETTTEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeecc--CCceEeeeEeeeccCCCCCcEE
Confidence            345689999999999875  5899999999999999765421      12222232  12332222   110  022467


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCc--------cccccceEEEEEeecccC----ccceeccCCCCceeeecccCccc---
Q 022870           80 ISQGRDGTVKCWDIENGGLSSNPS--------LTIKTNSYHFCKLSLVKE----PYANAKQANEPKDCYEREVGETV---  144 (291)
Q Consensus        80 ~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---  144 (291)
                      ++++.||.|++|++..........        ............+.....    .........+...+|++......   
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            799999999999987654322100        011111222222222211    11222333445555655322110   


Q ss_pred             --------------cccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCccee
Q 022870          145 --------------DTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM  206 (291)
Q Consensus       145 --------------~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (291)
                                    ......+..    ++|+|++  +++ +|+.|+.|++||+++++++..++..  ....+|    ...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~la-sgs~Dg~i~iwd~~~~~~~~~~~~~--~~l~~h----~~~  233 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIA-TGFNNGTVQISELSTLRPLYNFESQ--HSMINN----SNS  233 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEE-EECTTSEEEEEETTTTEEEEEEECC--C---CC----CCC
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC--EEE-EEeCCCcEEEEeecccccccccccc--cccccc----cce
Confidence                          001111111    7889987  444 7888999999999999888776531  011133    456


Q ss_pred             eeeEEEecCCCCCCceEEEeecCCC---cEEEEEccCCCCceeec-------------cccccceeEEEeecCCCeeEEe
Q 022870          207 CMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIRNPGIPLTAM-------------KVHLEPVLCLSIDESCNGGISG  270 (291)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~g~~dg---~i~vwd~~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~l~s~  270 (291)
                      +.+++ |+|+   |+ +|++|+.|+   .|++||+++ ++.+..+             .+|.+.|++++|+|++++|+||
T Consensus       234 V~~l~-~spd---g~-~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~  307 (393)
T d1sq9a_         234 IRSVK-FSPQ---GS-LLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  307 (393)
T ss_dssp             EEEEE-ECSS---TT-EEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             EEEcc-cccc---cc-eeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEE
Confidence            88887 9998   54 999999887   499999998 6665554             4799999999999999999999


Q ss_pred             cCCCeEEEEEcCCCceeeee
Q 022870          271 GADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       271 s~dg~i~vw~~~~~~~~~~~  290 (291)
                      |.|++|++||++++++++++
T Consensus       308 s~D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         308 GWDGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             ETTSEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEE
Confidence            99999999999999998764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-31  Score=207.23  Aligned_cols=254  Identities=14%  Similarity=0.088  Sum_probs=178.5

Q ss_pred             ceeEEEEcCCCCEEEEecCCC-eEEEEeCCCC--eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870           20 SVTDVCFHQTKPILFAGTTGG-ELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG   96 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg-~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~   96 (291)
                      .+++++|+|+++.|+.++.+. .|+.||....  .....+.+|.. .+|++++|+|..++.+|++|+.||+|++||+..+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~-~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS-SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTT-SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCC-CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            468899999999998876554 3566775443  34556666643 4599999998556679999999999999999876


Q ss_pred             CCCCCCcc------ccccceEEEEEeecccCccceecc-CCCCceeeecccCccccccCCCCCC----cccCCCCCcEEE
Q 022870           97 GLSSNPSL------TIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA  165 (291)
Q Consensus        97 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  165 (291)
                      +.......      .....+.....++........... .......+..+.... ...+.+|..    ++|+|+++.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~  176 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS-LGEVSGHSQRINACHLKQSRPMRSM  176 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE-EEECCSCSSCEEEEEECSSSSCEEE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc-ceeeeecccccccccccccccceEE
Confidence            54331110      111122223333332222222221 123344555554433 233455555    889999987666


Q ss_pred             EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870          166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL  245 (291)
Q Consensus       166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~  245 (291)
                       +++.|+.+++||++..+....+.        .+. .....+.+++ |+|+.  +. +|++|+.||.|++||+++ ++.+
T Consensus       177 -~~~~d~~v~~~d~~~~~~~~~~~--------~~~-~~~~~v~~v~-~~pd~--~~-~l~s~~~d~~i~iwd~~~-~~~~  241 (325)
T d1pgua1         177 -TVGDDGSVVFYQGPPFKFSASDR--------THH-KQGSFVRDVE-FSPDS--GE-FVITVGSDRKISCFDGKS-GEFL  241 (325)
T ss_dssp             -EEETTTEEEEEETTTBEEEEEEC--------SSS-CTTCCEEEEE-ECSTT--CC-EEEEEETTCCEEEEETTT-CCEE
T ss_pred             -Eeecccccccccccccccceecc--------ccc-CCCCccEEee-ecccc--ce-eccccccccceeeeeecc-cccc
Confidence             45569999999999887776665        221 2355678887 99973  33 899999999999999998 8899


Q ss_pred             eeccccccceeEEEee---cCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          246 TAMKVHLEPVLCLSID---ESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       246 ~~~~~h~~~v~~~~~~---~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ..+.+|..++.++.|+   +++.+|++++.|+.|+|||++++++++.+
T Consensus       242 ~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW  289 (325)
T ss_dssp             EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            9999999888777775   78899999999999999999999988653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-29  Score=194.22  Aligned_cols=238  Identities=17%  Similarity=0.283  Sum_probs=167.8

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV   88 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i   88 (291)
                      +.+....+|...|+|++|  ++++||||+.||+|+|||+++++++.++++|...  |++++|++    ++|++|+.|+.|
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~--V~~v~~~~----~~l~s~s~D~~i   77 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS--VLCLQYDE----RVIITGSSDSTV   77 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC--EEEEECCS----SEEEEEETTSCE
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC--Eeeeeccc----ceeecccccccc
Confidence            345566788999999876  6889999999999999999999999999999855  99998754    799999999999


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc--ccccCCCCCC--cccCCCCCcEE
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--VDTDSLCDSK--DDVPAEGPKYM  164 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~  164 (291)
                      ++|++..+....    ............. .................++......  .......|..  ....+....++
T Consensus        78 ~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  152 (293)
T d1p22a2          78 RVWDVNTGEMLN----TLIHHCEAVLHLR-FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  152 (293)
T ss_dssp             EEEESSSCCEEE----EECCCCSCEEEEE-CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             cccccccccccc----ccccccccccccc-ccccceeecccccceeEeeccccccccccccccccccccccceecccccc
Confidence            999999876432    1111111111111 1111222333444455555544332  2222333333  22333333333


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                        +++.|+.+++||+++++.+..+.        ++..    .+..+. +++.      ++++++.||.|++||+++ ...
T Consensus       153 --~~s~d~~i~~~d~~~~~~~~~~~--------~~~~----~v~~~~-~~~~------~l~~~~~dg~i~i~d~~~-~~~  210 (293)
T d1p22a2         153 --SASGDRTIKVWNTSTCEFVRTLN--------GHKR----GIACLQ-YRDR------LVVSGSSDNTIRLWDIEC-GAC  210 (293)
T ss_dssp             --EEETTSEEEEEETTTCCEEEEEE--------CCSS----CEEEEE-EETT------EEEEEETTSCEEEEETTT-CCE
T ss_pred             --cccCCCceeeecCCCCcEEEEEc--------cccc----cccccc-CCCC------eEEEecCCCEEEEEeccc-cee
Confidence              45568999999999999988887        4432    344444 6543      899999999999999998 888


Q ss_pred             eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      +..+.+|...+..+  .+++.+|++|+.||.|++||+.+
T Consensus       211 ~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         211 LRVLEGHEELVRCI--RFDNKRIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             EEEECCCSSCEEEE--ECCSSEEEEEETTSCEEEEEHHH
T ss_pred             eeeecccceeeeec--cccceEEEEEcCCCEEEEEECCC
Confidence            88899988888765  45566999999999999999754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.4e-30  Score=202.13  Aligned_cols=254  Identities=16%  Similarity=0.212  Sum_probs=174.3

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      ..+++.++++|+++|++++|+|++ +|++|+.||+|++|+....+..................+.+  ++.++++++.|+
T Consensus        42 ~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~  118 (355)
T d1nexb2          42 NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDN  118 (355)
T ss_dssp             TTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET--TEEEEEEEETTS
T ss_pred             CCcEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccccccccccccccccccccccccccccccc--ccceeeeecCCC
Confidence            357789999999999999999865 89999999999999999988887766655444456666777  888999999999


Q ss_pred             eEEEEECCCCCCCCCCccccc---------c--ceEEE--------EEeecccCccceeccCCCCceeeecccCcccccc
Q 022870           87 TVKCWDIENGGLSSNPSLTIK---------T--NSYHF--------CKLSLVKEPYANAKQANEPKDCYEREVGETVDTD  147 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~---------~--~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (291)
                      .|++||+++............         .  .....        ...... ...............|++...+.....
T Consensus       119 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~  197 (355)
T d1nexb2         119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYIL  197 (355)
T ss_dssp             EEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             cEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccc-cceeeeecccceeeeeecccccceeee
Confidence            999999987654321000000         0  00000        000000 011122233345566666655543332


Q ss_pred             CCCCCC---cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEE
Q 022870          148 SLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV  224 (291)
Q Consensus       148 ~~~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l  224 (291)
                      ......   ..++|++..++  +++.|+.|++||++++..+..+.        +|..    .+.++. |++.      +|
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~i~d~~~~~~~~~~~--------~h~~----~v~~~~-~~~~------~l  256 (355)
T d1nexb2         198 SGHTDRIYSTIYDHERKRCI--SASMDTTIRIWDLENGELMYTLQ--------GHTA----LVGLLR-LSDK------FL  256 (355)
T ss_dssp             CCCSSCEEEEEEETTTTEEE--EEETTSCEEEEETTTCCEEEEEC--------CCSS----CCCEEE-ECSS------EE
T ss_pred             eccccccccccccccceeee--cccccceEEeeeccccccccccc--------cccc----cccccc-cccc------ee
Confidence            222222   78889987665  56679999999999999998887        6644    456665 8765      89


Q ss_pred             EeecCCCcEEEEEccCCCCceeeccccccceeEEEe-ecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      ++|+.||.|++||+++ ..  ..+..|...+.++.+ ++++.+|++| .||.|++||++++++++.
T Consensus       257 ~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~  318 (355)
T d1nexb2         257 VSAAADGSIRGWDAND-YS--RKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHA  318 (355)
T ss_dssp             EEECTTSEEEEEETTT-CC--EEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCS
T ss_pred             eeeecccccccccccc-cc--eecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEE
Confidence            9999999999999987 43  345567777777655 6777766665 589999999999988754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-27  Score=184.02  Aligned_cols=246  Identities=17%  Similarity=0.288  Sum_probs=167.3

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEE------------------
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV------------------   68 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~------------------   68 (291)
                      ..++++++.+|.+.|++++|+|+  +|++|+.|+.+++|+............+...  +...                  
T Consensus        46 ~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~  121 (342)
T d2ovrb2          46 TGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTST--VRCMHLHEKRVVSGSRDATLRV  121 (342)
T ss_dssp             TCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEETTEEEEEETTSEEEE
T ss_pred             CCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceeccccccee--EeeeecccccccccccceeEEE
Confidence            45789999999999999999875  8999999999999998876544433322211  2111                  


Q ss_pred             --------------------EEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceecc
Q 022870           69 --------------------ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ  128 (291)
Q Consensus        69 --------------------~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (291)
                                          ...+  ....+++++.|+.|++||....+...    .+..+............ ......
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~-~l~s~~  194 (342)
T d2ovrb2         122 WDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH----TLQGHTNRVYSLQFDGI-HVVSGS  194 (342)
T ss_dssp             EESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE----EECCCSSCEEEEEECSS-EEEEEE
T ss_pred             eecccccceeeeecccccceeecc--ccceeeeecCCCeEEEeecccceeeE----EEcCcccccccccCCCC-EEEEEe
Confidence                                1222  33566777777777777776654322    22222222222222221 222334


Q ss_pred             CCCCceeeecccCccccccCCCCCC--cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCccee
Q 022870          129 ANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM  206 (291)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (291)
                      ..+...+|+++....... ...|..  .+++++++. ++ +|+.|+.|++||+...+....+.        ++.. ....
T Consensus       195 ~dg~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-l~-s~s~d~~i~iwd~~~~~~~~~~~--------~~~~-~~~~  262 (342)
T d2ovrb2         195 LDTSIRVWDVETGNCIHT-LTGHQSLTSGMELKDNI-LV-SGNADSTVKIWDIKTGQCLQTLQ--------GPNK-HQSA  262 (342)
T ss_dssp             TTSCEEEEETTTCCEEEE-ECCCCSCEEEEEEETTE-EE-EEETTSCEEEEETTTCCEEEEEC--------STTS-CSSC
T ss_pred             CCCeEEEeecccceeeeE-ecccccceeEEecCCCE-EE-EEcCCCEEEEEeccccccccccc--------ccce-eeec
Confidence            456677788776654433 344444  555566654 44 56779999999999988887776        3322 2344


Q ss_pred             eeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc-----ccccceeEEEeecCCCeeEEecCCCe----EE
Q 022870          207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDESCNGGISGGADQK----IV  277 (291)
Q Consensus       207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~----i~  277 (291)
                      +.++. ++++      ++++|+.||.|++||+++ ++.++.+.     +|.+.|++++|+|++.+|++|+.||+    |+
T Consensus       263 ~~~~~-~~~~------~~~s~s~Dg~i~iwd~~t-g~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~  334 (342)
T d2ovrb2         263 VTCLQ-FNKN------FVITSSDDGTVKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL  334 (342)
T ss_dssp             EEEEE-ECSS------EEEEEETTSEEEEEETTT-CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEE
T ss_pred             eeecc-cCCC------eeEEEcCCCEEEEEECCC-CCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEE
Confidence            55565 7665      899999999999999998 77777653     67789999999999999999999985    99


Q ss_pred             EEEcCC
Q 022870          278 LYNLDH  283 (291)
Q Consensus       278 vw~~~~  283 (291)
                      +||++.
T Consensus       335 ~~Df~~  340 (342)
T d2ovrb2         335 VLDFDV  340 (342)
T ss_dssp             EEECCC
T ss_pred             EEeCCC
Confidence            999875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.7e-27  Score=183.51  Aligned_cols=222  Identities=18%  Similarity=0.254  Sum_probs=155.3

Q ss_pred             EEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCcc
Q 022870           44 IWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY  123 (291)
Q Consensus        44 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (291)
                      .|.. ......++++|...  |++++|+|  ++++|+||+.||+|++||+++++...  .+..+........+.......
T Consensus         2 ~w~p-~~~~~~~L~GH~~~--I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~   74 (317)
T d1vyhc1           2 EWIP-RPPEKYALSGHRSP--VTRVIFHP--VFSVMVSASEDATIKVWDYETGDFER--TLKGHTDSVQDISFDHSGKLL   74 (317)
T ss_dssp             CCCC-CSSCSCEEECCSSC--EEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCE--EECCCSSCEEEEEECTTSSEE
T ss_pred             ccCC-CCCccEEEcCCCCC--eEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEE--EEeCCCCcEEEEeeecccccc
Confidence            4543 34445678899855  99999999  99999999999999999999887643  222222222222222211100


Q ss_pred             -----------------------------------------ceeccCCCCceeeecccCccccccCCCCCC----cccCC
Q 022870          124 -----------------------------------------ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA  158 (291)
Q Consensus       124 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  158 (291)
                                                               ............|++....... .+.+|..    ++|+|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  153 (317)
T d1vyhc1          75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQ  153 (317)
T ss_dssp             EEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeee-EEccCCCcceeeeccc
Confidence                                                     0111112233344444433222 2333433    78999


Q ss_pred             CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCC-----------------CCc
Q 022870          159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS-----------------QGF  221 (291)
Q Consensus       159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----------------~g~  221 (291)
                      ++..++  +++.|+.|++|++++++....+.        +|.    ..+..+. |+|+..                 .+.
T Consensus       154 ~~~~l~--~~~~d~~v~~~~~~~~~~~~~~~--------~~~----~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (317)
T d1vyhc1         154 DGTLIA--SCSNDQTVRVWVVATKECKAELR--------EHR----HVVECIS-WAPESSYSSISEATGSETKKSGKPGP  218 (317)
T ss_dssp             TSSEEE--EEETTSCEEEEETTTCCEEEEEC--------CCS----SCEEEEE-ECCSCGGGGGGGCCSCC-------CC
T ss_pred             CCCEEE--EEeCCCeEEEEeeccceeeEEEe--------cCC----CCceEEE-EeeccccceeeccccceeeeeccCCc
Confidence            987544  56679999999999999888877        442    2344454 665421                 123


Q ss_pred             eEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       222 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                       ++++|+.||.|++||+++ ++++..+.+|...|.+++|+|++++|++|+.||.|++||++++++++++
T Consensus       219 -~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  285 (317)
T d1vyhc1         219 -FLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  285 (317)
T ss_dssp             -EEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             -eeEeccCCCEEEEEECCC-CcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence             789999999999999998 8899999999999999999999999999999999999999999887654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-27  Score=181.77  Aligned_cols=240  Identities=15%  Similarity=0.269  Sum_probs=162.6

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG   86 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg   86 (291)
                      ..++++++++|+++|++++|  ++++|++|+.|+.|++|++..+........+..    ....+.+  ....++++..++
T Consensus        44 ~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~  115 (293)
T d1p22a2          44 TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE----AVLHLRF--NNGMMVTCSKDR  115 (293)
T ss_dssp             SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCS----CEEEEEC--CTTEEEEEETTS
T ss_pred             CCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccc----ccccccc--cccceeeccccc
Confidence            45788999999999999988  567999999999999999998887776655442    2233444  457899999999


Q ss_pred             eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEE
Q 022870           87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYM  164 (291)
Q Consensus        87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  164 (291)
                      .+.+||......... ......+........... ..............++......... +.++..  ..+.+++..+ 
T Consensus       116 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~~s~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~l-  191 (293)
T d1p22a2         116 SIAVWDMASPTDITL-RRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWNTSTCEFVRT-LNGHKRGIACLQYRDRLV-  191 (293)
T ss_dssp             CEEEEECSSSSCCEE-EEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEEETTEE-
T ss_pred             ceeEeeccccccccc-cccccccccccccceecc-cccccccCCCceeeecCCCCcEEEE-EcccccccccccCCCCeE-
Confidence            999999987653221 111111111111111111 1122233345566667665554332 233333  3344455444 


Q ss_pred             EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC---
Q 022870          165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---  241 (291)
Q Consensus       165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~---  241 (291)
                      + +++.|+.|++||+++.+.+..+.        ++..    .+..   +.++   +. +|++|+.||.|++||+...   
T Consensus       192 ~-~~~~dg~i~i~d~~~~~~~~~~~--------~~~~----~v~~---~~~~---~~-~l~sg~~dg~i~iwd~~~~~~~  251 (293)
T d1p22a2         192 V-SGSSDNTIRLWDIECGACLRVLE--------GHEE----LVRC---IRFD---NK-RIVSGAYDGKIKVWDLVAALDP  251 (293)
T ss_dssp             E-EEETTSCEEEEETTTCCEEEEEC--------CCSS----CEEE---EECC---SS-EEEEEETTSCEEEEEHHHHTST
T ss_pred             E-EecCCCEEEEEecccceeeeeec--------ccce----eeee---cccc---ce-EEEEEcCCCEEEEEECCCCccc
Confidence            3 56679999999999999888777        4433    2332   4444   33 8999999999999998531   


Q ss_pred             -----CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870          242 -----GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN  280 (291)
Q Consensus       242 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~  280 (291)
                           ..++..+.+|.+.|++++|++.  +|+|+|.||+|++||
T Consensus       252 ~~~~~~~~~~~~~~H~~~V~~v~~d~~--~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         252 RAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIWD  293 (293)
T ss_dssp             TSCTTTTEEEEECCCSSCCCCEEECSS--CEEECCSSSEEEEEC
T ss_pred             cccCCceeeEEecCCCCCEEEEEEcCC--EEEEEecCCEEEEeC
Confidence                 2356778899999999999654  899999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=1.8e-26  Score=178.23  Aligned_cols=245  Identities=13%  Similarity=0.145  Sum_probs=161.2

Q ss_pred             CCceEEe-cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE---EEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870            8 PDPVAVL-RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus         8 ~~~~~~l-~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      +++++.+ .+|...|++++|+|++. +++++.|+.+++|+......   ......+.  ..+.+++|+|  ++..+++++
T Consensus        44 ~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~--~g~~~~~~~  118 (299)
T d1nr0a2          44 GISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLS--SQPLGLAVSA--DGDIAVAAC  118 (299)
T ss_dssp             CCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECS--SCEEEEEECT--TSSCEEEEE
T ss_pred             CcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCCcccccccccccccc--cccccccccc--ccccccccc
Confidence            3556666 47999999999999986 45566789999999764321   11122344  3489999999  877666655


Q ss_pred             CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCC
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE  159 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  159 (291)
                       ++.+++|+......      ...........+++... ........+....|++............|..    ++|+|+
T Consensus       119 -~~~i~~~~~~~~~~------~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  190 (299)
T d1nr0a2         119 -YKHIAIYSHGKLTE------VPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN  190 (299)
T ss_dssp             -SSEEEEEETTEEEE------EECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT
T ss_pred             -cccccccccccccc------ccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence             56899999653211      11122223333333221 1222334556677777666544433344444    889999


Q ss_pred             CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      +..++  +++.|+.|++||+.++........     ..+|    ...+.+++ |+|+   +. +|++|+.||.|++||++
T Consensus       191 ~~~l~--~~~~d~~i~~~~~~~~~~~~~~~~-----~~~h----~~~v~~l~-~s~~---~~-~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         191 GAFLV--ATDQSRKVIPYSVANNFELAHTNS-----WTFH----TAKVACVS-WSPD---NV-RLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             SSEEE--EEETTSCEEEEEGGGTTEESCCCC-----CCCC----SSCEEEEE-ECTT---SS-EEEEEETTSCEEEEETT
T ss_pred             ccccc--cccccccccccccccccccccccc-----cccc----cccccccc-cccc---cc-ceEEEcCCCEEEEEECC
Confidence            87655  566789999999988766544331     1134    44677787 9998   44 99999999999999998


Q ss_pred             CCCC-ceeecccc-ccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          240 NPGI-PLTAMKVH-LEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       240 ~~~~-~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      +... +......| ...|..+.| +++.+|++++.||.|++||+.
T Consensus       255 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         255 KPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             CCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            7332 23333344 445666655 456789999999999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=8.6e-26  Score=177.04  Aligned_cols=214  Identities=14%  Similarity=0.189  Sum_probs=147.9

Q ss_pred             CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccC
Q 022870           50 HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA  129 (291)
Q Consensus        50 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (291)
                      .+..+++++|...  |++++|+|  ++.+|++|+.||+|++||+.+++...  .+..+........+.+......... .
T Consensus        45 ~~~~~tL~GH~~~--I~~l~~s~--~~~~l~sgs~Dg~v~iWd~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~-~  117 (340)
T d1tbga_          45 MRTRRTLRGHLAK--IYAMHWGT--DSRLLVSASQDGKLIIWDSYTTNKVH--AIPLRSSWVMTCAYAPSGNYVACGG-L  117 (340)
T ss_dssp             CCEEEEECCCSSC--EEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEE--EEECSCSCEEEEEECTTSSEEEEEE-T
T ss_pred             eeeeEEECCCCCC--EEEEEECC--CCCEEEEEECCCceeeeecccceeEE--EEecccccEEeeEeeccceeeeeec-c
Confidence            3566789999965  99999999  99999999999999999999886543  2333344444444443332221111 1


Q ss_pred             CCCceeeecccCc---------------------------------------------cccccCCCCCC---cccCCCCC
Q 022870          130 NEPKDCYEREVGE---------------------------------------------TVDTDSLCDSK---DDVPAEGP  161 (291)
Q Consensus       130 ~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~---~~~~~~~~  161 (291)
                      ......++.....                                             ...........   ..+.+.+.
T Consensus       118 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (340)
T d1tbga_         118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR  197 (340)
T ss_dssp             TCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             cceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc
Confidence            1111122111100                                             00000000001   33445554


Q ss_pred             cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                      . ++ +|..|+.|++||+++++++..+.        +|.    ..+.+++ |+|+   ++ +|++|+.||.|++||++. 
T Consensus       198 ~-~~-~~~~d~~v~i~d~~~~~~~~~~~--------~h~----~~i~~v~-~~p~---~~-~l~s~s~d~~i~~~~~~~-  257 (340)
T d1tbga_         198 L-FV-SGACDASAKLWDVREGMCRQTFT--------GHE----SDINAIC-FFPN---GN-AFATGSDDATCRLFDLRA-  257 (340)
T ss_dssp             E-EE-EEETTTEEEEEETTTTEEEEEEC--------CCS----SCEEEEE-ECTT---SS-EEEEEETTSCEEEEETTT-
T ss_pred             e-eE-EeecCceEEEEECCCCcEEEEEe--------CCC----CCeEEEE-ECCC---CC-EEEEEeCCCeEEEEeecc-
Confidence            3 33 56679999999999999998887        663    4577787 9998   44 899999999999999997 


Q ss_pred             CCceeec--cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          242 GIPLTAM--KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       242 ~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ...+..+  ..|...|++++|+|++++|++|+.||.|++||+.+++.+.++
T Consensus       258 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  308 (340)
T d1tbga_         258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             TEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE
Confidence            5555443  456778999999999999999999999999999999888764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=2.1e-24  Score=170.49  Aligned_cols=215  Identities=11%  Similarity=-0.002  Sum_probs=146.3

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCC--eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT   87 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~   87 (291)
                      .+..+ +|...|++++|+|||++|++++.+.  .|++||.++++.. .+..|...  |.+++|+|  ++++|++++.++.
T Consensus        35 ~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~--v~~~~~sp--dg~~l~~~~~~~~  108 (360)
T d1k32a3          35 YVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGN--VFAMGVDR--NGKFAVVANDRFE  108 (360)
T ss_dssp             BEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCS--EEEEEECT--TSSEEEEEETTSE
T ss_pred             cEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCce--EEeeeecc--cccccceeccccc
Confidence            33444 6999999999999999998766553  7999999877655 45566644  99999999  9999999999999


Q ss_pred             EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE-
Q 022870           88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV-  166 (291)
Q Consensus        88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  166 (291)
                      +++|++.+++...  ........                                        ...++|+|+|+.++.+ 
T Consensus       109 ~~~~~~~~~~~~~--~~~~~~~~----------------------------------------~~~~~~spdg~~la~~~  146 (360)
T d1k32a3         109 IMTVDLETGKPTV--IERSREAM----------------------------------------ITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             EEEEETTTCCEEE--EEECSSSC----------------------------------------CCCEEECTTSCEEEEEE
T ss_pred             cccccccccceee--eeeccccc----------------------------------------ccchhhccceeeeeeec
Confidence            9999998875422  11100000                                        0006699999876543 


Q ss_pred             -------ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          167 -------AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       167 -------~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                             .+..++.+++||+.+++......         +    ......+. |+|+   |+ +|++++.++.+.+||..
T Consensus       147 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~---------~----~~~~~~~~-~spd---g~-~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         147 PLKHGETDGYVMQAIHVYDMEGRKIFAATT---------E----NSHDYAPA-FDAD---SK-NLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             EECSSTTCSCCEEEEEEEETTTTEEEECSC---------S----SSBEEEEE-ECTT---SC-EEEEEESCCCCCEECSS
T ss_pred             cccccceeeccccceeeeccccCceeeecc---------c----cccccccc-ccCC---CC-EEEEEeCCCceEccccc
Confidence                   24456789999999876544332         1    12233333 6665   33 56666666666555532


Q ss_pred             CCC-------Cc--------------------------------------------------------------------
Q 022870          240 NPG-------IP--------------------------------------------------------------------  244 (291)
Q Consensus       240 ~~~-------~~--------------------------------------------------------------------  244 (291)
                      ...       ++                                                                    
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (360)
T d1k32a3         209 VLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA  288 (360)
T ss_dssp             SSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHH
T ss_pred             ccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCe
Confidence            100       00                                                                    


Q ss_pred             -----------e-------eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          245 -----------L-------TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       245 -----------~-------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                                 +       ..+..|.+.|.+++|+|||++|++++.||.|++||+++++...++
T Consensus       289 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         289 AYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             HHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred             eEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence                       0       011223456889999999999999999999999999998766554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5.3e-25  Score=176.58  Aligned_cols=199  Identities=15%  Similarity=0.188  Sum_probs=135.1

Q ss_pred             CccceeEEEEcCC-----CCEEEEecCCCeEEEEeCCCCe---------------EEEEEee-ecCCcceEEEEEeecCC
Q 022870           17 HRASVTDVCFHQT-----KPILFAGTTGGELRIWDTVQHR---------------TVSSSWV-HSAAHGIVSVATGPSIG   75 (291)
Q Consensus        17 h~~~v~~l~~~~~-----~~~l~s~~~dg~v~iwd~~~~~---------------~~~~~~~-~~~~~~v~~~~~~~~~~   75 (291)
                      +...+..++|.++     +.++++++.||++++|++....               ....... ......+.+++|+|  +
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d  195 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--R  195 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--T
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC--C
Confidence            5566778888764     4688999999999999974211               1111111 11123488999999  7


Q ss_pred             CCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--
Q 022870           76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--  153 (291)
Q Consensus        76 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  153 (291)
                      + +|++|+.||+|++||+++++...    .....                                    ..+.+|..  
T Consensus       196 g-~lasgs~Dg~i~iwd~~~~~~~~----~~~~~------------------------------------~~l~~h~~~V  234 (393)
T d1sq9a_         196 G-LIATGFNNGTVQISELSTLRPLY----NFESQ------------------------------------HSMINNSNSI  234 (393)
T ss_dssp             S-EEEEECTTSEEEEEETTTTEEEE----EEECC------------------------------------C---CCCCCE
T ss_pred             C-EEEEEeCCCcEEEEeeccccccc----ccccc------------------------------------cccccccceE
Confidence            4 89999999999999998875422    11100                                    00111222  


Q ss_pred             --cccCCCCCcEEEEecCCcC---eEEEEeCCCcceeeEecccccC-----CCCCCCCCcceeeeeEEEecCCCCCCceE
Q 022870          154 --DDVPAEGPKYMAVAGEQLS---EVEIWDLNTAERCTRLHQNSCG-----GSPNFSSKGRGMCMAVQAYLPSKSQGFVN  223 (291)
Q Consensus       154 --~~~~~~~~~~~~~~g~~d~---~i~~wd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  223 (291)
                        ++|+|+++.++  +|+.|+   .|++||+++++.+..+......     ...+|    ...+++++ |+|+   ++ +
T Consensus       235 ~~l~~spdg~~l~--sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH----~~~V~~l~-fspd---~~-~  303 (393)
T d1sq9a_         235 RSVKFSPQGSLLA--IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH----SSWVMSLS-FNDS---GE-T  303 (393)
T ss_dssp             EEEEECSSTTEEE--EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB----SSCEEEEE-ECSS---SS-E
T ss_pred             EEcccccccceee--eecCCCCcceeeecccccceeeeeeccccccccceeeeecc----cCceeeec-cCCC---CC-e
Confidence              67999997654  555565   5999999999988877532111     11234    55688887 9998   44 9


Q ss_pred             EEeecCCCcEEEEEccCCCCceeecccccccee----EEEeecCCCeeEEe
Q 022870          224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL----CLSIDESCNGGISG  270 (291)
Q Consensus       224 l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~----~~~~~~~~~~l~s~  270 (291)
                      |++|+.|+.|++||+++ ++++..+++|.+.|.    .++|++++..++++
T Consensus       304 l~S~s~D~~v~vWd~~~-g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         304 LCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             EEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             eEEECCCCEEEEEECCC-CCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            99999999999999998 899999999987664    35555555544433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=8e-22  Score=151.74  Aligned_cols=254  Identities=11%  Similarity=0.060  Sum_probs=174.5

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR   84 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~   84 (291)
                      ..+.++++... ..+..++|+|||++| ++++.++.|++||+.+++.+..+..+..   +..++|++  ++..++ ++..
T Consensus        21 t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~   94 (301)
T d1l0qa2          21 SNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS---PQGVAVSP--DGKQVYVTNMA   94 (301)
T ss_dssp             TTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS---EEEEEECT--TSSEEEEEETT
T ss_pred             CCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc---cccccccc--ccccccccccc
Confidence            34566667643 457899999999987 5677899999999999999998887643   68999999  877555 5667


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCc
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPK  162 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  162 (291)
                      ++.+.+|+..+++...  ..... .......+++.................++................  ++++|++..
T Consensus        95 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (301)
T d1l0qa2          95 SSTLSVIDTTSNTVAG--TVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTK  171 (301)
T ss_dssp             TTEEEEEETTTTEEEE--EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSE
T ss_pred             cceeeecccccceeee--ecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccc
Confidence            8899999998876433  11111 122333344443333333333344445555544433322222211  889999987


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee---cCCCcEEEEEcc
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIR  239 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~  239 (291)
                      +++ ++..++.+.+|+....+.......             ......+. |++++   . .++.+   ..++.|++||+.
T Consensus       172 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-~~~~g---~-~~~v~~~~~~~~~v~v~D~~  232 (301)
T d1l0qa2         172 VYV-ANFDSMSISVIDTVTNSVIDTVKV-------------EAAPSGIA-VNPEG---T-KAYVTNVDKYFNTVSMIDTG  232 (301)
T ss_dssp             EEE-EETTTTEEEEEETTTTEEEEEEEC-------------SSEEEEEE-ECTTS---S-EEEEEEECSSCCEEEEEETT
T ss_pred             eee-ecccccccccccccceeeeecccc-------------cCCcceee-ccccc---c-ccccccccceeeeeeeeecC
Confidence            766 455568899999988877766652             22345555 88874   3 33332   345789999999


Q ss_pred             CCCCceeeccccccceeEEEeecCCCee-EEecCCCeEEEEEcCCCceeeee
Q 022870          240 NPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      + ++.+..+.. ...+.+++|+|+|++| ++++.|+.|++||+++++++.++
T Consensus       233 t-~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         233 T-NKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM  282 (301)
T ss_dssp             T-TEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             C-CeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            8 777777765 4567999999999976 68888999999999999998765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=6.5e-23  Score=166.00  Aligned_cols=264  Identities=11%  Similarity=0.007  Sum_probs=166.5

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEE--Ee---eecCCcceEEEEEeecCCCCeEE-
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SW---VHSAAHGIVSVATGPSIGLNKVI-   80 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~---~~~~~~~v~~~~~~~~~~~~~l~-   80 (291)
                      ..+.+.++..|. .+..++|+|||++|++++.|++|++||+.+++....  ++   .|.  ..+.+++|+|  ||++++ 
T Consensus        51 t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~--~~~~s~~~sp--DG~~l~v  125 (426)
T d1hzua2          51 SKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR--SVESSKFKGY--EDRYTIA  125 (426)
T ss_dssp             TCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE--EEEECCSTTC--TTTEEEE
T ss_pred             CCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc--ceEEeeeecC--CCCEEEE
Confidence            456788898875 589999999999999999999999999998865433  22   333  2367788889  999875 


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCcccccc-----------ceEEEEEeecccCccceeccCCCCceeeecccCccccccCC
Q 022870           81 SQGRDGTVKCWDIENGGLSSNPSLTIKT-----------NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL  149 (291)
Q Consensus        81 s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (291)
                      ++..++.+++||..+.....  ......           ........+..................+.............
T Consensus       126 ~~~~~~~v~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  203 (426)
T d1hzua2         126 GAYWPPQFAIMDGETLEPKQ--IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI  203 (426)
T ss_dssp             EEEESSEEEEEETTTCCEEE--EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE
T ss_pred             eecCCCeEEEEcCCccceeE--EeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe
Confidence            55588999999999876532  111000           01111111111111111111111222222222221111111


Q ss_pred             CCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEE
Q 022870          150 CDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL  225 (291)
Q Consensus       150 ~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~  225 (291)
                      .+..    ++|+|+++++++ +...+..+.++|..+++.+......        ........  .. +.+... +....+
T Consensus       204 ~~~~~~~~~~~~~~g~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--~~-~~~~~~-~~~~~~  270 (426)
T d1hzua2         204 GAAPFLADGGWDSSHRYFMT-AANNSNKVAVIDSKDRRLSALVDVG--------KTPHPGRG--AN-FVHPKY-GPVWST  270 (426)
T ss_dssp             ECCSSEEEEEECTTSCEEEE-EETTCSEEEEEETTTTEEEEEEECS--------SCCCCSCC--EE-EEETTT-EEEEEE
T ss_pred             ccCCccEeeeECCCCcEEEe-eeecccceeeeecccccEEEEeccC--------Ccccccce--ee-eecCCC-CceEEe
Confidence            1111    889999987776 4556789999999999988777631        11111111  11 322211 332445


Q ss_pred             eecCCCcEEEEEccCC------CCceeeccccccceeEEEeecCCCeeE-------EecCCCeEEEEEcCCCceeeee
Q 022870          226 AGYEDGSILVWDIRNP------GIPLTAMKVHLEPVLCLSIDESCNGGI-------SGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       226 ~g~~dg~i~vwd~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~-------s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      ....|+.+.+|+....      .+....+.+|...+..++|+|++++|+       +++.|++|+|||+++++..+++
T Consensus       271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence            5667889999987652      256677889999999999999999999       4667899999999998766543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.1e-23  Score=164.62  Aligned_cols=258  Identities=12%  Similarity=0.035  Sum_probs=157.8

Q ss_pred             EecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870           13 VLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW   91 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw   91 (291)
                      ...+|.++|++++|+|+ +.+|++|+.||.|++|+...+........+.. .......+.+  +...+++++.|+++++|
T Consensus        51 ~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~w  127 (342)
T d1yfqa_          51 QSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA-NLGICRICKY--GDDKLIAASWDGLIEVI  127 (342)
T ss_dssp             EEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCC-CSCEEEEEEE--TTTEEEEEETTSEEEEE
T ss_pred             EecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccc-cccccccccc--cccccccccccccccee
Confidence            33469999999999985 56899999999999999988777666655543 2344555666  67899999999999999


Q ss_pred             ECCCCCCCCCCccccccc----eEEEEEeecccCccceeccCCCCceeeecccCcccccc---CCCCCC---cccCCCCC
Q 022870           92 DIENGGLSSNPSLTIKTN----SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD---SLCDSK---DDVPAEGP  161 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~  161 (291)
                      |++...............    ......+... ..........+....|++.........   ......   ..+.+...
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN-SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC-SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             eccccccceeeecccccccccceeeeeeeecc-CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC
Confidence            987654322111111100    0000111111 111222333445566666544322211   111111   34444444


Q ss_pred             cEEEEecCCcCeEEEEeCCCcceeeEecc----cccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870          162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQ----NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD  237 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd  237 (291)
                      ..++ +++.||.+.+|+............    ...... .........+.+++ |+|++   . +|++|+.||.|++||
T Consensus       207 ~~~~-~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~-~sp~~---~-~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         207 EGYA-CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN-LKDTNLAYPVNSIE-FSPRH---K-FLYTAGSDGIISCWN  279 (342)
T ss_dssp             CEEE-EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC-TTCCSSCCCEEEEE-ECTTT---C-CEEEEETTSCEEEEE
T ss_pred             CEEE-eecCCCeEEEEEecCCcceeeccccceeeeeeec-cCCCcccccceeEE-ecCCc---c-EEEEECCCCEEEEEE
Confidence            4444 566799999999875432211100    000000 11112234567787 99984   4 899999999999999


Q ss_pred             ccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      +++ ++.+..+..+ ..+..++|++++++|++++.|+.+++|....
T Consensus       280 ~~~-~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         280 LQT-RKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             TTT-TEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred             CCC-CcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence            998 7778777643 3445677788888999999998888887643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.9e-22  Score=163.16  Aligned_cols=272  Identities=8%  Similarity=-0.064  Sum_probs=158.0

Q ss_pred             CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE--EEEEe---eecCCcceEEEEEeecCCCCeE-
Q 022870            6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSW---VHSAAHGIVSVATGPSIGLNKV-   79 (291)
Q Consensus         6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~---~~~~~~~v~~~~~~~~~~~~~l-   79 (291)
                      ...+++.++..|. .+..++|+|||+++++++.||+|++||+.+++.  ...++   .|.  ..+.+..|+|  ||++| 
T Consensus        50 ~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~--~~~~s~~~Sp--DG~~l~  124 (432)
T d1qksa2          50 STYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR--SIETSKMEGW--EDKYAI  124 (432)
T ss_dssp             TTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE--EEEECCSTTC--TTTEEE
T ss_pred             CCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC--CeEEecccCC--CCCEEE
Confidence            3457788888774 699999999999999999999999999987653  33333   333  2366777888  99876 


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCcc--------cc-ccceEEEEEeecccCccceeccCCCCceeeecccCcccc-ccCC
Q 022870           80 ISQGRDGTVKCWDIENGGLSSNPSL--------TI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD-TDSL  149 (291)
Q Consensus        80 ~s~~~dg~i~iwd~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  149 (291)
                      ++++.+++|++||..+++.......        .. .........++..................++........ ..+.
T Consensus       125 vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~  204 (432)
T d1qksa2         125 AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS  204 (432)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE
T ss_pred             EEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc
Confidence            6788899999999998865431000        00 111112222222222222222333344444444433211 1111


Q ss_pred             CCCC---cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCC------------------------------
Q 022870          150 CDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS------------------------------  196 (291)
Q Consensus       150 ~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~------------------------------  196 (291)
                      ....   ++|+|+|+++++++ ..++.+.++|..+++....+........                              
T Consensus       205 ~g~~~~~~~~spdg~~~~va~-~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~  283 (432)
T d1qksa2         205 AERFLHDGGLDGSHRYFITAA-NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIG  283 (432)
T ss_dssp             CCSSEEEEEECTTSCEEEEEE-GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred             ccCccccceECCCCCEEEEec-cccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecc
Confidence            1111   89999998877654 4478899999987766544332100000                              


Q ss_pred             ---CCCCCCcceeeeeEEEecCCCC--------------------------------CCceEEEeecCCCcEEEEEccCC
Q 022870          197 ---PNFSSKGRGMCMAVQAYLPSKS--------------------------------QGFVNVLAGYEDGSILVWDIRNP  241 (291)
Q Consensus       197 ---~~~~~~~~~~~~~~~~~~p~~~--------------------------------~g~~~l~~g~~dg~i~vwd~~~~  241 (291)
                         ..+.. ....+.... +.|++.                                +++ .+++++.|+.+++||+.+ 
T Consensus       284 ~~~~~~~~-~~~~v~~~~-~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~-~la~~s~d~~~k~w~~~~-  359 (432)
T d1qksa2         284 TDPEGHPD-NAWKILDSF-PALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK-AMTGDGSDPEFKTLPIAE-  359 (432)
T ss_dssp             CCTTTCTT-TBTSEEEEE-ECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG-GCCCSSSCCCEEEECHHH-
T ss_pred             cccccccc-cccEEEEEE-EcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEech-hhcccccCCceEeccccc-
Confidence               00000 000112222 333311                                122 334444444555554433 


Q ss_pred             CCceeeccccccceeEEEeecCCCeeEEec-----CCCeEEEEEcCCCceeeee
Q 022870          242 GIPLTAMKVHLEPVLCLSIDESCNGGISGG-----ADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-----~dg~i~vw~~~~~~~~~~~  290 (291)
                      .   ..+..|...|..++|+|||++|+.+.     .+|.|+|||..+.++.+.+
T Consensus       360 ~---~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i  410 (432)
T d1qksa2         360 W---AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI  410 (432)
T ss_dssp             H---HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred             c---cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEe
Confidence            1   12335677899999999999885443     4789999999999986643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=2.2e-21  Score=156.86  Aligned_cols=213  Identities=14%  Similarity=-0.003  Sum_probs=151.5

Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccc
Q 022870           27 HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI  106 (291)
Q Consensus        27 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  106 (291)
                      +++.-++++.+.||+|.|||..+++++..+..+.   .+..++|+|  ||+++++++.|++|++||+.+++...  ...+
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~---~~~~v~fSp--DG~~l~~~s~dg~v~~~d~~t~~~~~--~~~i  101 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTT--VAEI  101 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCE--EEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC---CeeEEEECC--CCCEEEEEcCCCCEEEEEeeCCCceE--EEEE
Confidence            3344356899999999999999999999998763   389999999  99999999999999999998876422  2223


Q ss_pred             ccceE-EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCccee
Q 022870          107 KTNSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC  185 (291)
Q Consensus       107 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~  185 (291)
                      +.... ....++                                    .+|+|||+++++ +++.++.+++||..+++.+
T Consensus       102 ~~~~~~~~~~~s------------------------------------~~~SpDG~~l~v-s~~~~~~v~i~d~~t~~~~  144 (432)
T d1qksa2         102 KIGSEARSIETS------------------------------------KMEGWEDKYAIA-GAYWPPQYVIMDGETLEPK  144 (432)
T ss_dssp             ECCSEEEEEEEC------------------------------------CSTTCTTTEEEE-EEEETTEEEEEETTTCCEE
T ss_pred             ecCCCCCCeEEe------------------------------------cccCCCCCEEEE-EcCCCCeEEEEeCccccce
Confidence            32211 111111                                    348999987766 5666899999999999988


Q ss_pred             eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc-ccccceeEEEeecCC
Q 022870          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESC  264 (291)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~  264 (291)
                      ..+.......... .........++. ++|+   |..++++...++.|.+||..+ .+...... .+...+..++|+|+|
T Consensus       145 ~~~~~~~~~~~~~-~~~~~~~~~~v~-~s~d---g~~~~vs~~~~~~i~~~d~~~-~~~~~~~~i~~g~~~~~~~~spdg  218 (432)
T d1qksa2         145 KIQSTRGMTYDEQ-EYHPEPRVAAIL-ASHY---RPEFIVNVKETGKILLVDYTD-LNNLKTTEISAERFLHDGGLDGSH  218 (432)
T ss_dssp             EEEECCEECTTTC-CEESCCCEEEEE-ECSS---SSEEEEEETTTTEEEEEETTC-SSEEEEEEEECCSSEEEEEECTTS
T ss_pred             eeeccCCccccce-eccCCCceeEEE-ECCC---CCEEEEEEccCCeEEEEEccC-CCcceEEEEcccCccccceECCCC
Confidence            7776211000000 000123344555 8887   444677888899999999987 44433322 345678999999999


Q ss_pred             CeeEEecC-CCeEEEEEcCCCceeee
Q 022870          265 NGGISGGA-DQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       265 ~~l~s~s~-dg~i~vw~~~~~~~~~~  289 (291)
                      +++++++. ++.+.++|.++++.+..
T Consensus       219 ~~~~va~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         219 RYFITAANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             CEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             CEEEEeccccceEEEeecccceEEEE
Confidence            98766654 56899999998887644

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=3.7e-22  Score=157.44  Aligned_cols=194  Identities=13%  Similarity=0.032  Sum_probs=144.1

Q ss_pred             eEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC--eEEEEECCCCCC
Q 022870           22 TDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGL   98 (291)
Q Consensus        22 ~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~   98 (291)
                      ..-.||| ||+++|+++ +|.|++||++.+..+..  .|..  .|.+++|+|  ||++|++++.+.  .|++||.++++.
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~--~v~~~~~sp--Dg~~l~~~~~~~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPL--RIRYVRRGG--DTKVAFIHGTREGDFLGIYDYRTGKA   78 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCS--CEEEEEECS--SSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCC--CEEEEEECC--CCCEEEEEEcCCCCEEEEEECCCCcE
Confidence            4567999 999999886 47999999988877653  4664  499999999  999998776553  799999998754


Q ss_pred             CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870           99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD  178 (291)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd  178 (291)
                      ..  . ..+... ...                                       ++|+|++++++  +++.++.+++|+
T Consensus        79 ~~--~-~~~~~~-v~~---------------------------------------~~~spdg~~l~--~~~~~~~~~~~~  113 (360)
T d1k32a3          79 EK--F-EENLGN-VFA---------------------------------------MGVDRNGKFAV--VANDRFEIMTVD  113 (360)
T ss_dssp             EE--C-CCCCCS-EEE---------------------------------------EEECTTSSEEE--EEETTSEEEEEE
T ss_pred             EE--e-eCCCce-EEe---------------------------------------eeecccccccc--eecccccccccc
Confidence            22  1 111111 111                                       56999998766  455689999999


Q ss_pred             CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe----------ecCCCcEEEEEccCCCCceeec
Q 022870          179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA----------GYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~----------g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      +.+++....+.        .|.    ..+.++. |+|+   |+ +|+.          +..++.+++||+.+ ++ ...+
T Consensus       114 ~~~~~~~~~~~--------~~~----~~~~~~~-~spd---g~-~la~~~~~~~~~~~~~~~~~~~v~d~~~-~~-~~~~  174 (360)
T d1k32a3         114 LETGKPTVIER--------SRE----AMITDFT-ISDN---SR-FIAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAA  174 (360)
T ss_dssp             TTTCCEEEEEE--------CSS----SCCCCEE-ECTT---SC-EEEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEEC
T ss_pred             ccccceeeeee--------ccc----ccccchh-hccc---ee-eeeeeccccccceeeccccceeeecccc-Cc-eeee
Confidence            99998877776        342    3344565 9998   54 6663          34566799999986 44 4445


Q ss_pred             cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                      ..|...+..++|+|+|++|++++.|+.+++|+......
T Consensus       175 ~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~  212 (360)
T d1k32a3         175 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  212 (360)
T ss_dssp             SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             cccccccccccccCCCCEEEEEeCCCceEcccccccce
Confidence            55678889999999999999999999999999766543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.3e-22  Score=153.19  Aligned_cols=203  Identities=15%  Similarity=0.200  Sum_probs=130.2

Q ss_pred             CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecc----------
Q 022870           50 HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV----------  119 (291)
Q Consensus        50 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  119 (291)
                      .++++++++|..+  |++++|+|      |+||+.||+|++||+.+.....       ........+...          
T Consensus         3 ~~~i~~l~gH~~~--I~~l~~s~------l~sgs~Dg~v~~Wd~~~~~~~h-------~~~V~~~~~~~~~~~~s~s~D~   67 (287)
T d1pgua2           3 DEVLKTISGHNKG--ITALTVNP------LISGSYDGRIMEWSSSSMHQDH-------SNLIVSLDNSKAQEYSSISWDD   67 (287)
T ss_dssp             EEEEEEECCCSSC--EEEEETTT------TEEEETTSCEEETTTTEEECCC-------CSCEEEEECCSTTCCEEEETTT
T ss_pred             cceeEEECCCCCc--eEEEEECc------EEEEeCCCeEEEEECCCCCCCC-------CCCEEEEEecCCCeEEEEeecc
Confidence            4678899999855  99999976      8999999999999987653221       111111100000          


Q ss_pred             ----------------------cCccceeccCCCCceeeecccCccccccCCCCCC-cccCCCCCcEEEEecCCcCeEEE
Q 022870          120 ----------------------KEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus       120 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~~  176 (291)
                                            ................++......... +..+.. .++++++..+++ ++..++.+++
T Consensus        68 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v-~~~~~~~v~~  145 (287)
T d1pgua2          68 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS-VRLNSPGSAVSLSQNYVAV-GLEEGNTIQV  145 (287)
T ss_dssp             EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECSSEEEE-EETTTSCEEE
T ss_pred             ccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeee-ccccceeeeeeccCcceee-eccccceeee
Confidence                                  000000111111111222222221111 111112 567777765554 5555678999


Q ss_pred             EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccccee
Q 022870          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (291)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (291)
                      |++...+....+..       .    ....+.+++ |+|++   . +|++|+.||.|++||+.+.......+.+|...|+
T Consensus       146 ~~~~~~~~~~~~~~-------~----~~~~v~~~~-~s~~~---~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~  209 (287)
T d1pgua2         146 FKLSDLEVSFDLKT-------P----LRAKPSYIS-ISPSE---T-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN  209 (287)
T ss_dssp             EETTEEEEEEECSS-------C----CSSCEEEEE-ECTTS---S-EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred             eeccccceeeeeee-------c----cCCceeEEE-eccCc---c-ccccccccccccceeecccccccccccccccccc
Confidence            99987666555542       2    244677887 99984   4 9999999999999999983334456789999999


Q ss_pred             EEEeecC----------CCeeEEecCCCeEEEEEcCCCc
Q 022870          257 CLSIDES----------CNGGISGGADQKIVLYNLDHST  285 (291)
Q Consensus       257 ~~~~~~~----------~~~l~s~s~dg~i~vw~~~~~~  285 (291)
                      +++|+|.          +.+|++|+.|++|++||++++.
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~  248 (287)
T d1pgua2         210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM  248 (287)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             eeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence            9999764          5689999999999999997743

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=5.7e-21  Score=149.12  Aligned_cols=243  Identities=11%  Similarity=0.063  Sum_probs=151.1

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCCCCCCCccccccc
Q 022870           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (291)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  109 (291)
                      +++++++.|++|++||+++++.+.++..+.....+.+++|+|  ||++++ +++.++.|.+||+.+++...  .......
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp--Dg~~l~v~~~~~~~v~v~D~~t~~~~~--~~~~~~~   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLG--RIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEE--EEECCBT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECC--CCCEEEEEECCCCeEEEEECCCCcEEE--EEecCCC
Confidence            489999999999999999999999988765434478999999  998874 66789999999999987643  1111111


Q ss_pred             eEE-----EEEeecccCccceec-----------cCCCCceeeecccCccccccCCCC--CCcccCCCCCcEEEEecCCc
Q 022870          110 SYH-----FCKLSLVKEPYANAK-----------QANEPKDCYEREVGETVDTDSLCD--SKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus       110 ~~~-----~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~d  171 (291)
                      ...     ...+++.........           ........++..............  ..++|+|+|+.+++  ++  
T Consensus        78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~--~~--  153 (337)
T d1pbyb_          78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYG--LG--  153 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEE--ES--
T ss_pred             cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEE--Ec--
Confidence            100     111111111111000           011222333444333222211111  12899999988774  33  


Q ss_pred             CeEEEEeCCCcceeeEecccccCCC-----------CCCCCC--------------------------------------
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGS-----------PNFSSK--------------------------------------  202 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~-----------~~~~~~--------------------------------------  202 (291)
                      +.+.+||..+++....+........           ......                                      
T Consensus       154 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (337)
T d1pbyb_         154 RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM  233 (337)
T ss_dssp             SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred             CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEE
Confidence            4578899998877666543110000           000000                                      


Q ss_pred             -----cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEE
Q 022870          203 -----GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIV  277 (291)
Q Consensus       203 -----~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~  277 (291)
                           ......... ++|+   +. +++.+  ++.|++||+.+ ++.+..+. +...+.+++|+|+|++|++++.|+.|+
T Consensus       234 ~~~~~~~~~~~~~~-~~~~---~~-~~~~~--~~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~  304 (337)
T d1pbyb_         234 REVRIMDVFYFSTA-VNPA---KT-RAFGA--YNVLESFDLEK-NASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLA  304 (337)
T ss_dssp             EEEEECSSCEEEEE-ECTT---SS-EEEEE--ESEEEEEETTT-TEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEE
T ss_pred             EEecCCCcceEEEE-eccc---ce-EEEEc--cccEEEEECCC-CcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence                 000111222 4443   22 44443  57899999998 77777765 567789999999999999999999999


Q ss_pred             EEEcCCCceeeee
Q 022870          278 LYNLDHSTVSHCV  290 (291)
Q Consensus       278 vw~~~~~~~~~~~  290 (291)
                      +||.++.+.+.++
T Consensus       305 v~D~~t~~~v~~i  317 (337)
T d1pbyb_         305 AYDAETLEKKGQV  317 (337)
T ss_dssp             EEETTTCCEEEEE
T ss_pred             EEECCCCcEEEEE
Confidence            9999999888664

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=2.7e-20  Score=145.76  Aligned_cols=258  Identities=10%  Similarity=0.067  Sum_probs=159.8

Q ss_pred             CCceEEec-CCccceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCC----cceEEEEEeecCCCCeEEE
Q 022870            8 PDPVAVLR-GHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIVSVATGPSIGLNKVIS   81 (291)
Q Consensus         8 ~~~~~~l~-~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s   81 (291)
                      .+++++++ .|...+.+++|+|||+++ +++..++.|++||+.+++.+..+......    ..+..++|+|  ||+++++
T Consensus        28 ~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~--DG~~l~v  105 (346)
T d1jmxb_          28 DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYA  105 (346)
T ss_dssp             TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEE
T ss_pred             CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec--CCCEEEE
Confidence            45677776 466778999999999987 56678999999999999998877643321    1256889999  9998887


Q ss_pred             Ee------------CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCC
Q 022870           82 QG------------RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL  149 (291)
Q Consensus        82 ~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (291)
                      ++            .++.+.+||..+++...................    .........+.....++............
T Consensus       106 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (346)
T d1jmxb_         106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA----ADDGSLYVAGPDIYKMDVKTGKYTVALPL  181 (346)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE----CTTSCEEEESSSEEEECTTTCCEEEEECS
T ss_pred             EecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEe----cCCCEEEEeCCcceEEEccCCCEEEEEec
Confidence            65            467899999887654331100000000000000    11111112223344445444333222111


Q ss_pred             CC-CC-cccCCCCCcEEEE------------------------ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCc
Q 022870          150 CD-SK-DDVPAEGPKYMAV------------------------AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG  203 (291)
Q Consensus       150 ~~-~~-~~~~~~~~~~~~~------------------------~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  203 (291)
                      .. .. ..++|++..+++.                        ++..+..+.+||..++........       .+    
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----  250 (346)
T d1jmxb_         182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-------DL----  250 (346)
T ss_dssp             TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-------EC----
T ss_pred             CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEee-------cc----
Confidence            11 11 5566665443221                        122244567777776665443321       12    


Q ss_pred             ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      ........ ++|++   . +++.+. ++.|++||..+ ++.+..+. +...+.+++|+|||++|++++.||.|++||+++
T Consensus       251 ~~~~~~~~-~~~~~---~-~~~~~~-~~~v~v~d~~~-~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         251 TELYFTGL-RSPKD---P-NQIYGV-LNRLAKYDLKQ-RKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             SSCEEEEE-ECSSC---T-TEEEEE-ESEEEEEETTT-TEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             cceeEEEE-EeCCC---C-EEEEec-CCeEEEEECCC-CcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence            22345554 77763   3 455444 45799999998 77776665 456799999999999999999999999999999


Q ss_pred             Cceeeee
Q 022870          284 STVSHCV  290 (291)
Q Consensus       284 ~~~~~~~  290 (291)
                      ++.+.++
T Consensus       323 ~~~i~~i  329 (346)
T d1jmxb_         323 LEKVKNI  329 (346)
T ss_dssp             TEEEEEE
T ss_pred             CCEEEEE
Confidence            9988764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.85  E-value=8e-19  Score=139.08  Aligned_cols=263  Identities=8%  Similarity=-0.065  Sum_probs=159.0

Q ss_pred             ecCCccceeEEEEcCCCCEEEEe-----cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe-----
Q 022870           14 LRGHRASVTDVCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-----   83 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-----   83 (291)
                      ..++..++.+++++|||+.++..     +.++.|.+||..+++.+..+..+.    ...++|+|  ||++|++++     
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~----~~~~a~Sp--DG~~l~va~~~~~~   89 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----LPNPVAAH--SGSEFALASTSFSR   89 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC----CccEEEcC--CCCEEEEEeecCCc
Confidence            45688999999999999988764     345679999999999999887654    33799999  999998875     


Q ss_pred             -----CCCeEEEEECCCCCCCCCCccccccceE-------EEEEeecccCccceecc-CCCCceeeecccCccccccCCC
Q 022870           84 -----RDGTVKCWDIENGGLSSNPSLTIKTNSY-------HFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLC  150 (291)
Q Consensus        84 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  150 (291)
                           .++.|.+||..+++...  .........       ....++........... .......++....... .....
T Consensus        90 ~~~~~~~~~v~v~D~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~  166 (373)
T d2madh_          90 IAKGKRTDYVEVFDPVTFLPIA--DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD-QLLSS  166 (373)
T ss_pred             ccccccceEEEEEECCCCcEEE--EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE-EEecc
Confidence                 46789999999987643  111111111       11122222222111111 1112222222222111 11111


Q ss_pred             CCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCC------------------CCCCC---------C-
Q 022870          151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS------------------PNFSS---------K-  202 (291)
Q Consensus       151 ~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~------------------~~~~~---------~-  202 (291)
                      ...+.++|+++.+++ +.+.|+.+.+||...++.............                  .....         . 
T Consensus       167 ~~~~~~s~~g~~~~v-~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         167 PTCYHIHPGAPSTFY-LLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             ceeEEEecCCCcEEE-EEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCe
Confidence            112778999987766 566689999999887655443221000000                  00000         0 


Q ss_pred             ---------c----------ceeeeeEEEecCCCC-------CCceEEEeecCCCcEEEEEccCCCCceeecccccccee
Q 022870          203 ---------G----------RGMCMAVQAYLPSKS-------QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL  256 (291)
Q Consensus       203 ---------~----------~~~~~~~~~~~p~~~-------~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  256 (291)
                               .          ......+. ++|++.       .+. .+++...++.+.+||..+ ++.+..+. +...+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~-~~~~~~~~~~v~~~d~~t-~~~~~~~~-~~~~~~  321 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVA-YLKSSDGIYLLTSEQS-AWKLHAAAKEVTSVTGLV-GQTSSQIS-LGHDVD  321 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeE-EecCCCeEEEecCCCc-eEEeecCCCeEEEEECCC-CcEEEEec-CCCCee
Confidence                     0          00001111 333311       011 344556678899999998 77777665 567789


Q ss_pred             EEEeecCCCe--eEEecCCCeEEEEEcCCCceeeee
Q 022870          257 CLSIDESCNG--GISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       257 ~~~~~~~~~~--l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      .++|+|||+.  +++++.|+.|++||+.+++.++.+
T Consensus       322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            9999999984  478999999999999999998876

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=7.7e-19  Score=141.84  Aligned_cols=204  Identities=12%  Similarity=-0.013  Sum_probs=145.4

Q ss_pred             CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccc
Q 022870           30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN  109 (291)
Q Consensus        30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  109 (291)
                      +.++++.+.||+|+|||+.+++.+.++..+.   .+..++|+|  ||++|++++.|++|++||+.+++...  ...+...
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~---~~~~vafSP--DGk~l~~~~~d~~v~vwd~~t~~~~~--~~~i~~~  104 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGY---AVHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTK--VAEIKIG  104 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEECCS---SEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEE--EEEEECC
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEeCCC---CeeEEEECC--CCCEEEEEeCCCCEEEEEccCCceeE--EEEEeCC
Confidence            3356888999999999999999999998763   389999999  99999999999999999999886432  2222222


Q ss_pred             eE-EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEe
Q 022870          110 SY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (291)
Q Consensus       110 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~  188 (291)
                      .. ....++                                    .+|+|||+++++ ++..++.+++||..++++...+
T Consensus       105 ~~~~~~~~s------------------------------------~~~spDG~~l~v-~~~~~~~v~i~d~~~~~~~~~~  147 (426)
T d1hzua2         105 IEARSVESS------------------------------------KFKGYEDRYTIA-GAYWPPQFAIMDGETLEPKQIV  147 (426)
T ss_dssp             SEEEEEEEC------------------------------------CSTTCTTTEEEE-EEEESSEEEEEETTTCCEEEEE
T ss_pred             CCCcceEEe------------------------------------eeecCCCCEEEE-eecCCCeEEEEcCCccceeEEe
Confidence            11 111122                                    459999987765 5556899999999999887776


Q ss_pred             cccccCCCCCCCCC-------cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEee
Q 022870          189 HQNSCGGSPNFSSK-------GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID  261 (291)
Q Consensus       189 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~  261 (291)
                      .        .+...       ..+....+. ++++   +...+.+....+.+.+++..+.........++...+..+.|+
T Consensus       148 ~--------~~~~~~~~~~~~~~~~~~~i~-~s~d---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (426)
T d1hzua2         148 S--------TRGMTVDTQTYHPEPRVAAII-ASHE---HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD  215 (426)
T ss_dssp             E--------CCEECSSSCCEESCCCEEEEE-ECSS---SSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC
T ss_pred             e--------ccCCCccceeecCCCceeEEE-ECCC---CCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeEC
Confidence            5        22111       112223333 6665   333455555667777777766333344455678889999999


Q ss_pred             cCCCeeEEec-CCCeEEEEEcCCCceeee
Q 022870          262 ESCNGGISGG-ADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       262 ~~~~~l~s~s-~dg~i~vw~~~~~~~~~~  289 (291)
                      |++++++++. .+..+.+|+..+++.+..
T Consensus       216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~  244 (426)
T d1hzua2         216 SSHRYFMTAANNSNKVAVIDSKDRRLSAL  244 (426)
T ss_dssp             TTSCEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             CCCcEEEeeeecccceeeeecccccEEEE
Confidence            9999876655 567899999999887654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.84  E-value=4.2e-18  Score=130.64  Aligned_cols=229  Identities=11%  Similarity=0.096  Sum_probs=153.8

Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCCCCCCCccccccceE
Q 022870           33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTNSY  111 (291)
Q Consensus        33 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  111 (291)
                      .++++.|++|.+||+++++.+.++....   .+..++|+|  +|++|+ +++.++.|++||+.+++...  .+.... ..
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~---~p~~va~sp--dG~~l~v~~~~~~~i~v~d~~t~~~~~--~~~~~~-~~   76 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIA--TVPAGS-SP   76 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEE--EEECSS-SE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCC---CceEEEEeC--CCCEEEEEECCCCEEEEEECCCCceee--eeeccc-cc
Confidence            3567889999999999999999887653   378999999  999775 67789999999999886543  111221 22


Q ss_pred             EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC---cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEe
Q 022870          112 HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL  188 (291)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~  188 (291)
                      ....+...................++.......... ..+..   ++++|++..+++ ++..++.+.+|+..+.+....+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dg~~~~~-~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV-KTGKSPLGLALSPDGKKLYV-TNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEE-EETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccccccccccccccccceeeecccccceeeeec-cccccceEEEeecCCCeeee-eeccccceeeeeccccceeeec
Confidence            333333333323333333344455555544333222 22222   889999987766 5666899999999999888877


Q ss_pred             cccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeE
Q 022870          189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI  268 (291)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  268 (291)
                      ..        +     .....+. ++|+   +...+++...++.+.+|+... ......+.. ...+..++|++++..++
T Consensus       155 ~~--------~-----~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~g~~~~  215 (301)
T d1l0qa2         155 SV--------G-----RSPKGIA-VTPD---GTKVYVANFDSMSISVIDTVT-NSVIDTVKV-EAAPSGIAVNPEGTKAY  215 (301)
T ss_dssp             EC--------C-----SSEEEEE-ECTT---SSEEEEEETTTTEEEEEETTT-TEEEEEEEC-SSEEEEEEECTTSSEEE
T ss_pred             cc--------C-----CCceEEE-eecc---ccceeeecccccccccccccc-eeeeecccc-cCCcceeeccccccccc
Confidence            62        2     1244555 8887   432444555567788888775 555555554 45678899999999876


Q ss_pred             Eec---CCCeEEEEEcCCCceeeee
Q 022870          269 SGG---ADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       269 s~s---~dg~i~vw~~~~~~~~~~~  290 (291)
                      .++   .++.|++||+.+++++..+
T Consensus       216 v~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         216 VTNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             EEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             cccccceeeeeeeeecCCCeEEEEE
Confidence            553   3478999999999887654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=3.7e-18  Score=132.89  Aligned_cols=258  Identities=12%  Similarity=0.076  Sum_probs=147.1

Q ss_pred             CCccceeEEEEcCCCCEEE-EecCCCeEEEEeCCCCeEEEEEeeec-CCcceEEEEEeecCCCCeEEEEeC-CCeEEEEE
Q 022870           16 GHRASVTDVCFHQTKPILF-AGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGR-DGTVKCWD   92 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd   92 (291)
                      .|.+.+..|+|+|||++|+ ++..|+.|++|++........+..+. ....+..++|+|  ||++|++++. ++.|.+|+
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp--Dg~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH--QGQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT--TSSEEEEEETTTTEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC--CCCEEeecccCCCceeeec
Confidence            5889999999999999885 45568999999987654332222211 113367899999  9999988875 67899998


Q ss_pred             CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccc-------cccCCCCCC--cccCCCCCcE
Q 022870           93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV-------DTDSLCDSK--DDVPAEGPKY  163 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~  163 (291)
                      ...................+...+++.................++.......       .....+...  ++|++++..+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~  191 (333)
T d1ri6a_         112 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  191 (333)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             cccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeE
Confidence            7765432100000011111112222222222222222222333333222111       011111111  8899998766


Q ss_pred             EEEecCCcCeEEEEeCCCccee----eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870          164 MAVAGEQLSEVEIWDLNTAERC----TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR  239 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~  239 (291)
                      +. +....+...+|+.......    ......      ............+. ++|+   ++..++++..++.+.+|++.
T Consensus       192 ~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~s~d---~~~~~~~~~~~~~~~~~~~~  260 (333)
T d1ri6a_         192 YC-VNELNSSVDVWELKDPHGNIECVQTLDMM------PENFSDTRWAADIH-ITPD---GRHLYACDRTASLITVFSVS  260 (333)
T ss_dssp             EE-EETTTTEEEEEESSCTTSCCEEEEEEECS------CTTCCSCCCEEEEE-ECTT---SSEEEEEETTTTEEEEEEEC
T ss_pred             Ee-eccccCceEEEeecccccceeeeeeeeee------ecCCCccccceeEE-Eecc---cCceeeecccCCeEEEEEEc
Confidence            55 4555678888887543321    111110      00111123344555 8887   55467777888999999998


Q ss_pred             CCCCceee--ccccccceeEEEeecCCCeeEEe-cCCCeEEEEEc--CCCce
Q 022870          240 NPGIPLTA--MKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNL--DHSTV  286 (291)
Q Consensus       240 ~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~-s~dg~i~vw~~--~~~~~  286 (291)
                      ........  ...+...+.+++|+|+|++|+++ +.++.|++|++  +++++
T Consensus       261 ~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         261 EDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             TTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             CCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            63333222  22334567899999999987655 45689999955  56655

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=9.8e-18  Score=131.74  Aligned_cols=259  Identities=10%  Similarity=0.034  Sum_probs=149.6

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEe----------cCCCeEEEEeCCCCeEEEEEeeecCC-----cceEEEEEeec
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAG----------TTGGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPS   73 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~----------~~dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~   73 (291)
                      +++.++..+..  ..++|+|||++|++.          ..|+.|++||..+++.+..+..+...     .....++|+| 
T Consensus        39 ~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-  115 (355)
T d2bbkh_          39 RVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-  115 (355)
T ss_dssp             EEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-
T ss_pred             cEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec-
Confidence            44555554433  368999999988764          34789999999999988887654321     1134678999 


Q ss_pred             CCCCeEEEEe--CCCeEEEEECCCCCCCCCCccccccceEE-------EEEeecccCccceeccCCCCceeeecccCccc
Q 022870           74 IGLNKVISQG--RDGTVKCWDIENGGLSSNPSLTIKTNSYH-------FCKLSLVKEPYANAKQANEPKDCYEREVGETV  144 (291)
Q Consensus        74 ~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (291)
                       ++++++.++  .+..+.+|+..+++...  ..........       ...+....................+.......
T Consensus       116 -dg~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~  192 (355)
T d2bbkh_         116 -DGKTLLFYQFSPAPAVGVVDLEGKAFKR--MLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE  192 (355)
T ss_dssp             -TSSEEEEEECSSSCEEEEEETTTTEEEE--EEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred             -CCCeeEEecCCCCceeeeeecCCCcEee--EEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce
Confidence             988877664  56789999999876533  1111111110       01111111111111111111111111111100


Q ss_pred             cccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCC------cceeeeeEEEecCCCC
Q 022870          145 DTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK------GRGMCMAVQAYLPSKS  218 (291)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~p~~~  218 (291)
                      ....  -....+.+++..++.  .+.++.+++|++..++........      .+...      .......+. ++|+  
T Consensus       193 ~~~~--~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~~-~~~d--  259 (355)
T d2bbkh_         193 DEFL--INHPAYSQKAGRLVW--PTYTGKIHQIDLSSGDAKFLPAVE------ALTEAERADGWRPGGWQQVA-YHRA--  259 (355)
T ss_dssp             TSCB--CSCCEEETTTTEEEE--EBTTSEEEEEECTTSSCEECCCEE------SSCHHHHHTTEEECSSSCEE-EETT--
T ss_pred             ecce--eeeccccCCCCeEEE--ecCCCeEEEEecCCCcEEEEeccC------CcccceEeeeeeccceEEEE-EeCC--
Confidence            0000  000456666665553  445799999999887543211100      11000      001112243 7777  


Q ss_pred             CCceEEEeecC----------CCcEEEEEccCCCCceeeccccccceeEEEeecCCC--eeEEecCCCeEEEEEcCCCce
Q 022870          219 QGFVNVLAGYE----------DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN--GGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       219 ~g~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vw~~~~~~~  286 (291)
                       +. .++....          ...|.+||..+ ++.+..+.. ...+.+++|+|+|+  ++++++.|+.|++||++++++
T Consensus       260 -~~-~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         260 -LD-RIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             -TT-EEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             -CC-eEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence             33 4443322          24799999998 777777764 45689999999997  457788899999999999999


Q ss_pred             eeee
Q 022870          287 SHCV  290 (291)
Q Consensus       287 ~~~~  290 (291)
                      ++++
T Consensus       336 ~~~i  339 (355)
T d2bbkh_         336 LRSV  339 (355)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8876

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.73  E-value=2.2e-16  Score=123.13  Aligned_cols=255  Identities=10%  Similarity=0.030  Sum_probs=145.0

Q ss_pred             EEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCCCCCCC
Q 022870           24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNP  102 (291)
Q Consensus        24 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~  102 (291)
                      ++|++++++|++++.|++|.+||+.+++.+.+++.+.. ..+.+++|+|  ||++++ +++.++.|.+||+.+++.....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~sp--DG~~l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECC--CCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence            57899999999999999999999999999998875432 3378999999  998875 5668899999999988654311


Q ss_pred             ccccccceEE----EEEeecccCcccee-----------ccCCCCceeeecccCcccccc---CCCCCC--cccCCCCCc
Q 022870          103 SLTIKTNSYH----FCKLSLVKEPYANA-----------KQANEPKDCYEREVGETVDTD---SLCDSK--DDVPAEGPK  162 (291)
Q Consensus       103 ~~~~~~~~~~----~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~  162 (291)
                      ..........    ...+++........           .........++..........   ......  +.+++++ .
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  157 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-S  157 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS-C
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC-E
Confidence            1000101110    11111111111000           011122223333332211110   001111  4455555 4


Q ss_pred             EEEEecCCcCeEEEEeCCCcceeeEecccccCCCC-----C------CCCCcceeeeeEEEecCCCCCCceEEEeecCCC
Q 022870          163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP-----N------FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG  231 (291)
Q Consensus       163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg  231 (291)
                      +++ ++   +.+.+||+.+++.+..+.........     +      ..............+.+.   ....++++..++
T Consensus       158 ~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  230 (346)
T d1jmxb_         158 LYV-AG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD---DKQDPATADLLY  230 (346)
T ss_dssp             EEE-ES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----------CCCEEEE
T ss_pred             EEE-eC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeecc---CceeEeeccCCc
Confidence            443 32   45899999998887776531100000     0      000000000111101111   111455666677


Q ss_pred             cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      .+.+||..+.......+..|...+..+.+++++.+++..+ ++.|++||..+++.+..+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~  288 (346)
T d1jmxb_         231 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAA  288 (346)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEE
T ss_pred             eEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEE
Confidence            8999999884444455667888899999999988888776 467999999999887653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=1e-15  Score=120.95  Aligned_cols=256  Identities=7%  Similarity=-0.071  Sum_probs=146.5

Q ss_pred             CceEEecCCccceeEEEEcCCCCEEEEec----------CCCeEEEEeCCCCeEEEEEeeecCC-----cceEEEEEeec
Q 022870            9 DPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPS   73 (291)
Q Consensus         9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~   73 (291)
                      +.+.++.++..+  .++|+|||+.|+..+          .|+.|++||..+++.+..+..+...     .....++|+| 
T Consensus        57 ~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-  133 (368)
T d1mdah_          57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-  133 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-
T ss_pred             cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-
Confidence            444555555443  589999999888753          4788999999999999888755321     1124689999 


Q ss_pred             CCCCeEEEEe-CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccc-----c
Q 022870           74 IGLNKVISQG-RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-----D  147 (291)
Q Consensus        74 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  147 (291)
                       ||++|+++. .++.+.+||+.+.+...  .........    ...............+....+..........     .
T Consensus       134 -DGk~l~va~~~~~~v~~~d~~~~~~~~--~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~  206 (368)
T d1mdah_         134 -SSACLLFFLFGSSAAAGLSVPGASDDQ--LTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             -TSSCEEEEECSSSCEEEEEETTTEEEE--EEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             -CCCEEEEEeCCCCeEEEEECCCCcEeE--EeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence             999998775 57999999999876543  111111100    0001111111111222222333222211100     0


Q ss_pred             CCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCC------cceeeeeEEEecCCC
Q 022870          148 SLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK------GRGMCMAVQAYLPSK  217 (291)
Q Consensus       148 ~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~p~~  217 (291)
                      ...+..    ..+.+++..+.  +.  ++.+.+++.............      .+...      .......+. ++|++
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~~--~~--~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~a-~~~~~  275 (368)
T d1mdah_         207 TGAQNCSSQAAQANYPGMLVW--AV--ASSILQGDIPAAGATMKAAID------GNESGRKADNFRSAGFQMVA-KLKNT  275 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEEEE--CB--SSCCEEEECCSSCCEEECCCC------SSCTHHHHTTEEECSSSCEE-EETTT
T ss_pred             ccccccceeecccccCcEEEE--ec--CCCEEEEeecCCceEEEeecc------cccceeeeeeecCCCceeEE-EcCCC
Confidence            111111    45566653322  32  366777877765544322210      11000      000111233 77763


Q ss_pred             CCCceEEEeecC--------CCcEEEEEccCCCCceeeccccccceeEEEeecCCC--eeEEecCCCeEEEEEcCCCcee
Q 022870          218 SQGFVNVLAGYE--------DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN--GGISGGADQKIVLYNLDHSTVS  287 (291)
Q Consensus       218 ~~g~~~l~~g~~--------dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vw~~~~~~~~  287 (291)
                         ...+++...        ...|.+||..+ ++.+..+.. ...+.+++|+|||+  ++++++.|+.|++||..+++.+
T Consensus       276 ---~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         276 ---DGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             ---TEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             ---CEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence               213332221        23699999998 777777764 46789999999997  3467788999999999999998


Q ss_pred             eee
Q 022870          288 HCV  290 (291)
Q Consensus       288 ~~~  290 (291)
                      .++
T Consensus       351 ~~i  353 (368)
T d1mdah_         351 SSV  353 (368)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.69  E-value=1.2e-14  Score=114.69  Aligned_cols=235  Identities=8%  Similarity=-0.063  Sum_probs=133.6

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEec----------CCCeEEEEeCCCCeEEEEEeeecCC--------------
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSAA--------------   62 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~--------------   62 (291)
                      ..+.+.++.++..+  .++|+|||++|++++          .++.|.+||..+++.+..+..+...              
T Consensus        56 tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s  133 (373)
T d2madh_          56 SGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT  133 (373)
T ss_pred             CCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEE
Confidence            34566666666544  799999999998874          4678999999988766544322110              


Q ss_pred             -------------------------------cceEEEEEeecCCCC-eEEEEeCCCeEEEEECCCCCCCCCCccccc--c
Q 022870           63 -------------------------------HGIVSVATGPSIGLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIK--T  108 (291)
Q Consensus        63 -------------------------------~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~  108 (291)
                                                     ....++.++|  ++. .+++.+.|+.+.+|+....+..........  .
T Consensus       134 ~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~  211 (373)
T d2madh_         134 PNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHP--GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA  211 (373)
T ss_pred             eCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEec--CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC
Confidence                                           1123455566  544 345677778888888776554321000000  0


Q ss_pred             ceEEEEEeecccCccceeccCCCCceeeecccCccc-------------ccc-CCCCCC-cccCCCCCcEEEE-------
Q 022870          109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV-------------DTD-SLCDSK-DDVPAEGPKYMAV-------  166 (291)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~-~~~~~~~~~~~~~-------  166 (291)
                      ...........................++.......             ... ...... +++++++..++..       
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  291 (373)
T d2madh_         212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW  291 (373)
T ss_pred             ccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE
Confidence            000011111111111111111222222222211100             000 001111 5566666544321       


Q ss_pred             -ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCce-EEEeecCCCcEEEEEccCCCCc
Q 022870          167 -AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV-NVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       167 -~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~-~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                       ....++.+.+||..+++.+..+..             ...+..+. |+|+   |+. ++++++.|+.|++||+.+ ++.
T Consensus       292 ~~~~~~~~v~~~d~~t~~~~~~~~~-------------~~~~~~~a-~spD---G~~~l~vt~~~d~~v~v~D~~t-g~~  353 (373)
T d2madh_         292 KLHAAAKEVTSVTGLVGQTSSQISL-------------GHDVDAIS-VAQD---GGPDLYALSAGTEVLHIYDAGA-GDQ  353 (373)
T ss_pred             EeecCCCeEEEEECCCCcEEEEecC-------------CCCeeEEE-ECCC---CCEEEEEEeCCCCeEEEEECCC-CCE
Confidence             334467899999999998888762             22456676 9998   442 457889999999999999 899


Q ss_pred             eeeccccccceeEEEeecC
Q 022870          245 LTAMKVHLEPVLCLSIDES  263 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~  263 (291)
                      +.++..+....+.|++.++
T Consensus       354 ~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         354 DQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EEEECCCCCCCcEEEEecC
Confidence            9999988888888887543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=2.7e-15  Score=116.46  Aligned_cols=215  Identities=13%  Similarity=0.037  Sum_probs=127.7

Q ss_pred             CCceEEecC--CccceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCC---cceEEEEEeecCCCCeEEE
Q 022870            8 PDPVAVLRG--HRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAA---HGIVSVATGPSIGLNKVIS   81 (291)
Q Consensus         8 ~~~~~~l~~--h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s   81 (291)
                      .+.+.++..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+...   ..+..++|+|  +++++++
T Consensus        21 ~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~--dg~~l~~   98 (337)
T d1pbyb_          21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAI   98 (337)
T ss_dssp             TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEE
T ss_pred             CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC--CCcEEEE
Confidence            355666654  34567899999999987 56788999999999999998887655321   1245678888  8777776


Q ss_pred             EeC------------CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCc---------------------------
Q 022870           82 QGR------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP---------------------------  122 (291)
Q Consensus        82 ~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  122 (291)
                      +..            +..+.+||..+.+....  ...... .....++.....                           
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~  175 (337)
T d1pbyb_          99 YESPVRLELTHFEVQPTRVALYDAETLSRRKA--FEAPRQ-ITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW  175 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEEEE--EECCSS-CCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTT
T ss_pred             eecCCcceeeeccccccceeeccccCCeEEEe--ccccCC-ceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCc
Confidence            653            46677787776543220  000000 000000000000                           


Q ss_pred             --------ccee--ccCCC-------------------------CceeeecccCccccccCCCCCC----cccCCCCCcE
Q 022870          123 --------YANA--KQANE-------------------------PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY  163 (291)
Q Consensus       123 --------~~~~--~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  163 (291)
                              ....  .....                         ....++.............+..    .+++|++..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (337)
T d1pbyb_         176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA  255 (337)
T ss_dssp             TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEE
Confidence                    0000  00000                         0111111111111111111222    5677877655


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI  243 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~  243 (291)
                      +  .+  ++.+++||+.+++.+..+..             ...+.++. |+|+   |+ +|++++.+|.|++||.++ .+
T Consensus       256 ~--~~--~~~i~v~d~~~~~~~~~~~~-------------~~~~~~~~-~s~d---G~-~l~v~~~~~~i~v~D~~t-~~  312 (337)
T d1pbyb_         256 F--GA--YNVLESFDLEKNASIKRVPL-------------PHSYYSVN-VSTD---GS-TVWLGGALGDLAAYDAET-LE  312 (337)
T ss_dssp             E--EE--ESEEEEEETTTTEEEEEEEC-------------SSCCCEEE-ECTT---SC-EEEEESBSSEEEEEETTT-CC
T ss_pred             E--Ec--cccEEEEECCCCcEEEEEcC-------------CCCEEEEE-ECCC---CC-EEEEEeCCCcEEEEECCC-Cc
Confidence            4  22  58899999999999888762             22356676 9998   54 899999999999999998 77


Q ss_pred             ceeeccc
Q 022870          244 PLTAMKV  250 (291)
Q Consensus       244 ~~~~~~~  250 (291)
                      .+.+++.
T Consensus       313 ~v~~i~~  319 (337)
T d1pbyb_         313 KKGQVDL  319 (337)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            7777654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=5.2e-14  Score=110.13  Aligned_cols=207  Identities=8%  Similarity=-0.083  Sum_probs=130.5

Q ss_pred             ceeEEEEcCCCCEEEEe-----cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe----------C
Q 022870           20 SVTDVCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------R   84 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~   84 (291)
                      ++.-.+.+||++.++..     ..+++|.+||..+++.+.++..+.    ...++|+|  ||++|++++          .
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~----~~~~a~Sp--Dg~~l~v~~~~~~~~~~g~~   76 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF----LPNPVVAD--DGSFIAHASTVFSRIARGER   76 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS----SCEEEECT--TSSCEEEEEEEEEETTEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC----CCceEEcC--CCCEEEEEeCCCccccccCC
Confidence            44445678999988764     346689999999999999887664    33799999  999887643          4


Q ss_pred             CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC-CcccCCCCCcE
Q 022870           85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS-KDDVPAEGPKY  163 (291)
Q Consensus        85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  163 (291)
                      |+.|++||..+++...  ............                                  .... .++|+|++..+
T Consensus        77 d~~v~v~D~~t~~~~~--~~~~~~~~~~~~----------------------------------~~~~~~~~~s~dg~~~  120 (355)
T d2bbkh_          77 TDYVEVFDPVTLLPTA--DIELPDAPRFLV----------------------------------GTYPWMTSLTPDGKTL  120 (355)
T ss_dssp             EEEEEEECTTTCCEEE--EEEETTCCCCCB----------------------------------SCCGGGEEECTTSSEE
T ss_pred             CCEEEEEECCCCCEEE--EEecCCcceeec----------------------------------CCCCceEEEecCCCee
Confidence            7899999999876432  000000000000                                  0000 06799999988


Q ss_pred             EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCc---ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG---RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      +++..+.+..+.+||..+++.+..+..        .....   ......+. ++++   +...++....++.+.+++...
T Consensus       121 ~v~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~d---g~~~~v~~~~~~~~~~~~~~~  188 (355)
T d2bbkh_         121 LFYQFSPAPAVGVVDLEGKAFKRMLDV--------PDCYHIFPTAPDTFFM-HCRD---GSLAKVAFGTEGTPEITHTEV  188 (355)
T ss_dssp             EEEECSSSCEEEEEETTTTEEEEEEEC--------CSEEEEEEEETTEEEE-EETT---SCEEEEECCSSSCCEEEECCC
T ss_pred             EEecCCCCceeeeeecCCCcEeeEEec--------CCcceEeecCCcceEE-EcCC---CCEEEEEecCCCeEEEEeccc
Confidence            877666778999999999988877762        11000   00011122 4443   221233333344444444333


Q ss_pred             CCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870          241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV  286 (291)
Q Consensus       241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~  286 (291)
                       ..     ..+...+....+.+++..++.++.++.+++|++..++.
T Consensus       189 -~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  228 (355)
T d2bbkh_         189 -FH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA  228 (355)
T ss_dssp             -CS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC
T ss_pred             -cc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE
Confidence             11     12344556677888888899999999999999998764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.4e-13  Score=106.58  Aligned_cols=239  Identities=7%  Similarity=0.073  Sum_probs=136.3

Q ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEe--eecCCcceEEEEEeecCCCCeEEEE-eCCCeEEEEECCCCCCCCCCccccc-
Q 022870           32 ILFAGTTGGELRIWDTVQHRTVSSSW--VHSAAHGIVSVATGPSIGLNKVISQ-GRDGTVKCWDIENGGLSSNPSLTIK-  107 (291)
Q Consensus        32 ~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~-  107 (291)
                      .+++++.|++|++|+++....+..++  .+.  ..+..|+|+|  ||++|+++ ..|+.|++|++.......+...... 
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~--~~v~~la~sp--DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVP--GQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECS--SCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCC--CCEeEEEEeC--CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence            45778899999999987654333333  344  4499999999  99988655 4589999999987643221111111 


Q ss_pred             cceEEEEEeecccCccceeccCCCCceeeecccCccccc-cCCCCC----CcccCCCCCcEEEEecCCcCeEEEEeCCCc
Q 022870          108 TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLCDS----KDDVPAEGPKYMAVAGEQLSEVEIWDLNTA  182 (291)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~  182 (291)
                      ........+++.................+.......... ....+.    .+.++|+++.++. +...+..+.+|+....
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~-~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWV-PALKQDRICLFTVSDD  160 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEE-EEGGGTEEEEEEECTT
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeec-cccccceeeEEEeccC
Confidence            111122334444333333333344444444443332111 111111    1889999987765 4445778999998765


Q ss_pred             ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee---ecc------cccc
Q 022870          183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT---AMK------VHLE  253 (291)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~---~~~------~h~~  253 (291)
                      ..........      ...........+. |+++   +...+.+....+...+|+.........   .+.      ....
T Consensus       161 ~~~~~~~~~~------~~~~~g~~p~~i~-~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (333)
T d1ri6a_         161 GHLVAQDPAE------VTTVEGAGPRHMV-FHPN---EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR  230 (333)
T ss_dssp             SCEEEEEEEE------EECSTTCCEEEEE-ECTT---SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred             Ccceeeecee------eeeecCCCccEEE-Eecc---ceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccc
Confidence            4333221100      0011122234555 8887   443556666778888998765222221   111      1234


Q ss_pred             ceeEEEeecCCCeeE-EecCCCeEEEEEcCCCc
Q 022870          254 PVLCLSIDESCNGGI-SGGADQKIVLYNLDHST  285 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~-s~s~dg~i~vw~~~~~~  285 (291)
                      ....+++++++++++ ++..++.+.+|++....
T Consensus       231 ~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~  263 (333)
T d1ri6a_         231 WAADIHITPDGRHLYACDRTASLITVFSVSEDG  263 (333)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred             cceeEEEecccCceeeecccCCeEEEEEEcCCC
Confidence            567788999998665 45567899999987654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.43  E-value=5.8e-12  Score=99.46  Aligned_cols=229  Identities=12%  Similarity=-0.004  Sum_probs=132.4

Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEEeeecC----------------------------CcceEEEEEeecCCCCeEEEE-e
Q 022870           33 LFAGTTGGELRIWDTVQHRTVSSSWVHSA----------------------------AHGIVSVATGPSIGLNKVISQ-G   83 (291)
Q Consensus        33 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----------------------------~~~v~~~~~~~~~~~~~l~s~-~   83 (291)
                      ++||+.+|+|++|++.+++.++.+.....                            ........+.|  ||++|++. .
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp--DGr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY--DGKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE--EEEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC--CCCEEEEEcC
Confidence            67888999999999999998888642100                            01144555678  89888655 5


Q ss_pred             CCCeEEEEECCCCCCCCCCccccc-cceEEEEEeecccCccceeccCCCC------------------ceeeecccCccc
Q 022870           84 RDGTVKCWDIENGGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEP------------------KDCYEREVGETV  144 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~  144 (291)
                      .++.|.++|+++.+...  +..+. ....+...+++..............                  ...++.......
T Consensus        92 ~~~rVavIDl~t~k~~~--ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDK--ITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             TTTEEEEEETTTTEEEE--EEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             CCCEEEEEECCCCcEee--EEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence            68899999999887543  22332 2334444555444332221111100                  011222222221


Q ss_pred             ccc-CCCCCC-cccCCCCCcEEEEecCC---------------------------------------cCeEEEEeCCCcc
Q 022870          145 DTD-SLCDSK-DDVPAEGPKYMAVAGEQ---------------------------------------LSEVEIWDLNTAE  183 (291)
Q Consensus       145 ~~~-~~~~~~-~~~~~~~~~~~~~~g~~---------------------------------------d~~i~~wd~~~~~  183 (291)
                      ... ..+... ++++|+|+++++++-..                                       ++.+.+++....+
T Consensus       170 ~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         170 WQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             EEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            111 112222 88889988776543221                                       2334444444444


Q ss_pred             eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc-------eeecccccc---
Q 022870          184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP-------LTAMKVHLE---  253 (291)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~-------~~~~~~h~~---  253 (291)
                      .+..++.        .     .....+. ++|+   |++.++++..+++|.|||+++..+.       ...+.++..   
T Consensus       250 v~~~IPv--------g-----ksPhGv~-vSPD---Gkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl  312 (441)
T d1qnia2         250 FTRYIPV--------P-----KNPHGLN-TSPD---GKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL  312 (441)
T ss_dssp             SEEEECC--------B-----SSCCCEE-ECTT---SCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred             eEEEEeC--------C-----CCccCce-ECCC---CCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc
Confidence            4444442        1     1234454 9998   6656678899999999998752111       111112111   


Q ss_pred             ceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          254 PVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      .....+|+++|+.+.+...|.+|..|++.
T Consensus       313 gplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             CcccceecCCceEEEcccccceEEEeccc
Confidence            23446899999999999999999999985

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.33  E-value=7.6e-11  Score=92.49  Aligned_cols=210  Identities=7%  Similarity=-0.095  Sum_probs=120.4

Q ss_pred             eEEEEcCCCCEEEEec-CCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCC
Q 022870           22 TDVCFHQTKPILFAGT-TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  100 (291)
                      ..++|+|||++|+.+. .++.+.+||+.+++....+..+...  .  +...   ....+++.+.||.+.+|++.......
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~--~--~~~~---~~~~~v~~~~Dg~~~~~~~~~~~~~~  199 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF--H--IHPG---AAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC--C--CEEE---ETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc--e--EccC---CCceEEEEcCCCCEEEEEecCCceee
Confidence            4689999999998775 5799999999999998888765432  1  1111   23566777788888888876543321


Q ss_pred             C----CccccccceEEEEEeecccCccceeccCCCCceeeecccCcccc---------------ccCCCCCCcccCCCCC
Q 022870          101 N----PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD---------------TDSLCDSKDDVPAEGP  161 (291)
Q Consensus       101 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~  161 (291)
                      .    ..................   .......+......+........               ....+...+++++++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~  276 (368)
T d1mdah_         200 GIVGAQCTGAQNCSSQAAQANYP---GMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD  276 (368)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTT---TEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred             eeeecccccccccceeecccccC---cEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCC
Confidence            0    000000000000000000   00011111122222222111100               0011122277888887


Q ss_pred             cEEEEecC-------CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCc-eEEEeecCCCcE
Q 022870          162 KYMAVAGE-------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYEDGSI  233 (291)
Q Consensus       162 ~~~~~~g~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~-~~l~~g~~dg~i  233 (291)
                      .+++....       ....|.+||..+++.+..+..             ...+.++. |+|+   |+ ..++++..++.|
T Consensus       277 ~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-------------~~~~~~~a-~spD---G~~~ly~s~~~~~~v  339 (368)
T d1mdah_         277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-------------GHDSDAII-AAQD---GASDNYANSAGTEVL  339 (368)
T ss_dssp             EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-------------EEEECEEE-ECCS---SSCEEEEEETTTTEE
T ss_pred             EEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-------------CCceeEEE-ECCC---CCEEEEEEeCCCCeE
Confidence            76654321       124699999999988877762             34567776 9998   43 245777889999


Q ss_pred             EEEEccCCCCceeeccccccceeEEEe
Q 022870          234 LVWDIRNPGIPLTAMKVHLEPVLCLSI  260 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~  260 (291)
                      ++||..+ ++.+.++..... .+.|++
T Consensus       340 ~v~D~~t-gk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         340 DIYDAAS-DQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             EEEESSS-CEEEEECCCCSC-CCEEEC
T ss_pred             EEEECCC-CCEEEEEECCCC-CCEEEE
Confidence            9999998 888888875433 455554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.31  E-value=1.5e-09  Score=87.91  Aligned_cols=80  Identities=10%  Similarity=-0.001  Sum_probs=63.6

Q ss_pred             EecCCccceeEEEEcCCCCEEEEec---------CCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGT---------TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG   83 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~   83 (291)
                      ++..|...|.++.|||||++|+.++         .++.+.+||+++++.. .+..+.  ..+..+.|+|  ||+.++...
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l~~~~--~~~~~~~~SP--DG~~ia~~~  130 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIP--NNTQWVTWSP--VGHKLAYVW  130 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCC--TTEEEEEECS--STTCEEEEE
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-ccccCC--cccccccccc--CcceeeEee
Confidence            3455678899999999999999874         3578899999988754 455565  4499999999  999999864


Q ss_pred             CCCeEEEEECCCCCC
Q 022870           84 RDGTVKCWDIENGGL   98 (291)
Q Consensus        84 ~dg~i~iwd~~~~~~   98 (291)
                       ++.+.+|+..+++.
T Consensus       131 -~~~l~~~~~~~g~~  144 (470)
T d2bgra1         131 -NNDIYVKIEPNLPS  144 (470)
T ss_dssp             -TTEEEEESSTTSCC
T ss_pred             -cccceEEECCCCce
Confidence             57899999887653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.31  E-value=3.2e-11  Score=95.22  Aligned_cols=249  Identities=10%  Similarity=0.056  Sum_probs=140.6

Q ss_pred             CCccceeEEEEcCCCCEEEEe-cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCe--EEEEeCCC------
Q 022870           16 GHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK--VISQGRDG------   86 (291)
Q Consensus        16 ~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~s~~~dg------   86 (291)
                      .|........++|||++|+.. ..+++|.++|+.++++...+..... .....++|+|  +++.  ++..+.+.      
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g-~gphgi~~sp--dg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV-QAIHGLRLQK--VPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTC-CCEEEEEECC--SSBCCEEEEEECSCEESSCS
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCC-CCccceEEec--cCCEEEEEeccCCcccccCc
Confidence            355566677778999988554 5788999999999998887765332 4589999999  8874  43444332      


Q ss_pred             -----------eEEEEECCCCCCCCCCccccccceEEEEEeecccCcccee-----------------------------
Q 022870           87 -----------TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-----------------------------  126 (291)
Q Consensus        87 -----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  126 (291)
                                 .+..+|..+.+...+.  .... ......+++........                             
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI--~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~  222 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQV--IVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI  222 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEE--EESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHH
T ss_pred             ccccccccccceEEeecCccceeeEEE--ecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccce
Confidence                       2344676665432210  0000 00111111111110000                             


Q ss_pred             ----------ccCCCCceeeecccCccccccCCCC-CC--cccCCCCCcEEEEecCCcCeEEEEeCCCccee--------
Q 022870          127 ----------KQANEPKDCYEREVGETVDTDSLCD-SK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC--------  185 (291)
Q Consensus       127 ----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~--------  185 (291)
                                ...+.....++..........++.. ..  ++++|||+++++ +|..+++|.+||+++.+..        
T Consensus       223 ~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~-~~~~~~tvsv~d~~k~~~~~~~~~~~~  301 (441)
T d1qnia2         223 AAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIA-NGKLSPTVSVIAIDKLDDLFEDKIELR  301 (441)
T ss_dssp             HHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEE-ECTTSSBEEEEEGGGHHHHTTTSSCGG
T ss_pred             EEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEE-eCCcCCcEEEEEeehhhhHhhccCCcc
Confidence                      0000111111111111111112222 12  999999988766 6888999999998753321        


Q ss_pred             eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC---------CCceeec-----ccc
Q 022870          186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---------GIPLTAM-----KVH  251 (291)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~---------~~~~~~~-----~~h  251 (291)
                      ..+.        ++.....+. .-.. |.+.   |. .+.+...|..|..|++...         ...+..+     .+|
T Consensus       302 ~~~~--------~~~~~glgp-lh~~-fd~~---g~-~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH  367 (441)
T d1qnia2         302 DTIV--------AEPELGLGP-LHTT-FDGR---GN-AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGH  367 (441)
T ss_dssp             GGEE--------ECCBCCSCE-EEEE-ECSS---SE-EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE
T ss_pred             eEEE--------eecccccCc-ccce-ecCC---ce-EEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCC
Confidence            0111        111111111 2233 8876   54 7788889999999997420         1122233     578


Q ss_pred             ccceeEEEeecCCCeeEEe---cCCC----------eEEEEEcCCCc
Q 022870          252 LEPVLCLSIDESCNGGISG---GADQ----------KIVLYNLDHST  285 (291)
Q Consensus       252 ~~~v~~~~~~~~~~~l~s~---s~dg----------~i~vw~~~~~~  285 (291)
                      ...+.+.+++|+|++|+++   |.|.          .-.+.|+...+
T Consensus       368 ~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~  414 (441)
T d1qnia2         368 NHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEE  414 (441)
T ss_dssp             EEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSS
T ss_pred             CccccccccCCCCcEEEecCccccccCcCCCCCCCccceeEEecCCe
Confidence            8888889999999999999   5564          34667776443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.29  E-value=3.1e-09  Score=80.78  Aligned_cols=219  Identities=10%  Similarity=-0.022  Sum_probs=132.7

Q ss_pred             ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      .+..+... ..+..++++|||+++++...+++|..|+.. ++.. .+....  ..+.+++|.+  +|+++++...++.+.
T Consensus        20 v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~-~~~~~~--~~~~gla~~~--dG~l~v~~~~~~~~~   92 (302)
T d2p4oa1          20 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQ-IHATVE--GKVSGLAFTS--NGDLVATGWNADSIP   92 (302)
T ss_dssp             EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEEECS--SEEEEEEECT--TSCEEEEEECTTSCE
T ss_pred             EEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEE-EEEcCC--CCcceEEEcC--CCCeEEEecCCceEE
Confidence            34445432 247889999999999999999999999965 4332 233333  4489999999  999888888888888


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (291)
                      .|+......................                                       +++.+++.. ++ +.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~n~---------------------------------------i~~~~~g~~-~v-~~~  131 (302)
T d2p4oa1          93 VVSLVKSDGTVETLLTLPDAIFLNG---------------------------------------ITPLSDTQY-LT-ADS  131 (302)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEE---------------------------------------EEESSSSEE-EE-EET
T ss_pred             EEEecccccceeeccccCCccccce---------------------------------------eEEccCCCE-Ee-ecc
Confidence            8887654321100000000000000                                       457788754 33 455


Q ss_pred             CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee-ec
Q 022870          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-AM  248 (291)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~-~~  248 (291)
                      .++.+..+|...+................+.  .......+. +..     ..++++.+..+.|+.++......... ..
T Consensus       132 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ngi~-~~~-----~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  203 (302)
T d2p4oa1         132 YRGAIWLIDVVQPSGSIWLEHPMLARSNSES--VFPAANGLK-RFG-----NFLYVSNTEKMLLLRIPVDSTDKPGEPEI  203 (302)
T ss_dssp             TTTEEEEEETTTTEEEEEEECGGGSCSSTTC--CSCSEEEEE-EET-----TEEEEEETTTTEEEEEEBCTTSCBCCCEE
T ss_pred             ccccceeeeccCCcceeEecCCccceeeccC--ccccccccc-ccC-----CceeeecCCCCeEEecccccccccccccc
Confidence            5788999998877543332211110100111  111223333 432     22677778899999999876322211 11


Q ss_pred             cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      ........+++++++|+++++...++.|..++.+.+
T Consensus       204 ~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         204 FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             ccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            122345678999999998888888999999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=4.8e-08  Score=72.58  Aligned_cols=211  Identities=9%  Similarity=-0.041  Sum_probs=117.6

Q ss_pred             EecCCccceeEEEEcCCCCEEEEecCC---CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CCeE
Q 022870           13 VLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTV   88 (291)
Q Consensus        13 ~l~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i   88 (291)
                      .+..+...+..-+|||||+.||-....   ..+.+.+...+.... +..+.  .......|+|  +|..++.... ++..
T Consensus        33 ~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~sp--dg~~i~~~~~~~~~~  107 (269)
T d2hqsa1          33 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFP--RHNGAPAFSP--DGSKLAFALSKTGSL  107 (269)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCS--SCEEEEEECT--TSSEEEEEECTTSSC
T ss_pred             EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE-Eeeee--cccccceecC--CCCeeeEeeecCCcc
Confidence            344456778899999999999865433   346677776665443 33344  3488899999  9888875443 3333


Q ss_pred             EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870           89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG  168 (291)
Q Consensus        89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  168 (291)
                      .++.....................                                         ..+++++...++++ 
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~-  145 (269)
T d2hqsa1         108 NLYVMDLASGQIRQVTDGRSNNTE-----------------------------------------PTWFPDSQNLAFTS-  145 (269)
T ss_dssp             EEEEEETTTCCEEECCCCSSCEEE-----------------------------------------EEECTTSSEEEEEE-
T ss_pred             ceeecccccccceeeeeccccccc-----------------------------------------cccccccccceecc-
Confidence            333322221110000000000000                                         22555665555533 


Q ss_pred             CCcC--eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          169 EQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       169 ~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      ..++  .|.+.++..+.......             ......... |+|+   ++.++......+...+|......... 
T Consensus       146 ~~~g~~~i~~~~~~~~~~~~~~~-------------~~~~~~~~~-~spd---g~~~~~~~~~~~~~~i~~~~~~~~~~-  207 (269)
T d2hqsa1         146 DQAGRPQVYKVNINGGAPQRITW-------------EGSQNQDAD-VSSD---GKFMVMVSSNGGQQHIAKQDLATGGV-  207 (269)
T ss_dssp             CTTSSCEEEEEETTSSCCEECCC-------------SSSEEEEEE-ECTT---SSEEEEEEECSSCEEEEEEETTTCCE-
T ss_pred             cccCCceEeeeecccccceeeec-------------ccccccccc-cccc---cceeEEEeecCCceeeeEeecccccc-
Confidence            3344  45666666554322221             123344444 9998   55355555566666666555423333 


Q ss_pred             eccccccceeEEEeecCCCeeEEecC---CCeEEEEEcCCCceee
Q 022870          247 AMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTVSH  288 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~~~~~~l~s~s~---dg~i~vw~~~~~~~~~  288 (291)
                      .+..+........|+|||+.|+-.+.   ...|.+++++.+...+
T Consensus       208 ~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         208 QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            33344566778899999999875443   3578999998876543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.15  E-value=3.6e-09  Score=85.57  Aligned_cols=117  Identities=9%  Similarity=0.056  Sum_probs=82.9

Q ss_pred             eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeec---CCcceEEEEEeecCCCCeEEEEeC---------CCeEE
Q 022870           22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS---AAHGIVSVATGPSIGLNKVISQGR---------DGTVK   89 (291)
Q Consensus        22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~   89 (291)
                      ..+.|.+++.+++.  .|+.+.+||+.+++....+..+.   ....|.++.|+|  ||++|+.++.         ++.+.
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp--Dg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT--TSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC--CCCEEEEEECCcceeeeccCceEE
Confidence            45789999987775  47789999999998776665432   113589999999  9999998753         56789


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE  169 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  169 (291)
                      +||+.+++...  +.........                                         ..|+|||+.++.+   
T Consensus        96 l~d~~~~~~~~--l~~~~~~~~~-----------------------------------------~~~SPDG~~ia~~---  129 (470)
T d2bgra1          96 IYDLNKRQLIT--EERIPNNTQW-----------------------------------------VTWSPVGHKLAYV---  129 (470)
T ss_dssp             EEETTTTEECC--SSCCCTTEEE-----------------------------------------EEECSSTTCEEEE---
T ss_pred             EEECCCCcccc--cccCCccccc-----------------------------------------cccccCcceeeEe---
Confidence            99999886432  1111111111                                         4599999887653   


Q ss_pred             CcCeEEEEeCCCcceeeEe
Q 022870          170 QLSEVEIWDLNTAERCTRL  188 (291)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~  188 (291)
                      .++.+++|+..+++..+..
T Consensus       130 ~~~~l~~~~~~~g~~~~~t  148 (470)
T d2bgra1         130 WNNDIYVKIEPNLPSYRIT  148 (470)
T ss_dssp             ETTEEEEESSTTSCCEECC
T ss_pred             ecccceEEECCCCceeeee
Confidence            2578999999988765543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.11  E-value=1.3e-07  Score=71.87  Aligned_cols=247  Identities=7%  Similarity=0.018  Sum_probs=135.1

Q ss_pred             ceeEEEEcCCCCEEEEecC-------CCeEEEEeCCCCeEEEEEeeecCC--cceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870           20 SVTDVCFHQTKPILFAGTT-------GGELRIWDTVQHRTVSSSWVHSAA--HGIVSVATGPSIGLNKVISQGRDGTVKC   90 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~s~~~dg~i~i   90 (291)
                      ..-.++|.++|++.++...       +|+|..||..+++...........  ..-..++|.+  +++.++++...+.|..
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~--dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR--DANQLFVADMRLGLLV   96 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS--SSSEEEEEETTTEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC--CCCEEEEEECCCeEEE
Confidence            3566899999987776433       467999998877654433221110  1246899999  8888888887778888


Q ss_pred             EECCCCCCCCCCccccccce---EEEEEeecccCccceec--------------cCCCCceeeecccCccccc---cCCC
Q 022870           91 WDIENGGLSSNPSLTIKTNS---YHFCKLSLVKEPYANAK--------------QANEPKDCYEREVGETVDT---DSLC  150 (291)
Q Consensus        91 wd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~---~~~~  150 (291)
                      .|......... ........   .....+...  ......              .......++.+........   .+..
T Consensus        97 ~~~~g~~~~~~-~~~~~g~~~~~pndl~~d~~--G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~  173 (314)
T d1pjxa_          97 VQTDGTFEEIA-KKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQF  173 (314)
T ss_dssp             EETTSCEEECC-SBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESS
T ss_pred             EeCCCcEEEEE-eccccccccCCCcEEEECCC--CCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcce
Confidence            88876532110 00000000   011111111  000000              0011122333322111111   1111


Q ss_pred             CCCcccCCCCC----cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe
Q 022870          151 DSKDDVPAEGP----KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA  226 (291)
Q Consensus       151 ~~~~~~~~~~~----~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~  226 (291)
                      -..++|+|+++    .+++ +-+..+.|..||+.....+...+...     ..........-.++ +.++   |+ +.++
T Consensus       174 pNGi~~~~d~d~~~~~lyv-~d~~~~~i~~~d~~~~g~~~~~~~~~-----~~~~~~~~~pdGia-vD~~---Gn-lyVa  242 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIV-AETPTKKLWSYDIKGPAKIENKKVWG-----HIPGTHEGGADGMD-FDED---NN-LLVA  242 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEE-EETTTTEEEEEEEEETTEEEEEEEEE-----ECCCCSSCEEEEEE-EBTT---CC-EEEE
T ss_pred             eeeeEECCCCCcceeEEEE-EeecccceEEeeccCccccceeeEEE-----EccccccccceeeE-EecC---Cc-EEEE
Confidence            11277887764    3443 55567889998876433222111000     00011122233454 7766   65 5666


Q ss_pred             ecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCC-eeEEecCCCeEEEEEcCC
Q 022870          227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDH  283 (291)
Q Consensus       227 g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~~~~  283 (291)
                      ....+.|.+||.+. ++.+..+......+++++|.++++ ++++.+.+|.|...++..
T Consensus       243 ~~~~g~I~~~dp~~-g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         243 NWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EcCCCEEEEEeCCC-CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            66788999999886 666666666667789999999886 557778889999888754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.05  E-value=7.7e-08  Score=71.20  Aligned_cols=233  Identities=9%  Similarity=-0.015  Sum_probs=123.7

Q ss_pred             cceeEEEEcCCCCEEEEe-cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           19 ASVTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      ..-..++++++|...++. +..+.+..++........ +.. ........+++.+  +++++++....+.+++++-.+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~-~~~-~~~~~p~gvav~~--~g~i~v~d~~~~~i~~~~~~~~~   89 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPF-NGLYQPQGLAVDG--AGTVYVTDFNNRVVTLAAGSNNQ   89 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE-CCC-CSCCSCCCEEECT--TCCEEEEETTTEEEEECTTCSCC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE-ecc-CCccCceEEEEcC--CCCEEEeeeeeceeeeeeeccce
Confidence            345899999999866654 556777777755432222 111 1112257889999  88877777777777766654443


Q ss_pred             CCCCCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccCccc--cccCCC--CCC-cccCCCCCcEEEEecCCc
Q 022870           98 LSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV--DTDSLC--DSK-DDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~-~~~~~~~~~~~~~~g~~d  171 (291)
                      ...    .... .......+..  ....... .........+......  .....+  ... +++++++. +++ +...+
T Consensus        90 ~~~----~~~~~~~p~~iavd~--~g~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v-~~~~~  160 (260)
T d1rwia_          90 TVL----PFDGLNYPEGLAVDT--QGAVYVA-DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYV-TDTDN  160 (260)
T ss_dssp             EEC----CCCSCCSEEEEEECT--TCCEEEE-EGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEE-EEGGG
T ss_pred             eee----eeeeeeecccccccc--cceeEee-ccccccccccccccceeeeeeecccCCcceeeecCCCC-Eee-ecccc
Confidence            221    1111 1111111211  1111111 1111112222211111  111111  111 88889886 444 33446


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc-c
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-V  250 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~  250 (291)
                      +.|..+|....... .+..       .    .......++ +.++   |. ++++...++.|..++... . ....+. .
T Consensus       161 ~~i~~~d~~~~~~~-~~~~-------~----~~~~p~gi~-~d~~---g~-l~vsd~~~~~i~~~~~~~-~-~~~~~~~~  221 (260)
T d1rwia_         161 NRVVKLEAESNNQV-VLPF-------T----DITAPWGIA-VDEA---GT-VYVTEHNTNQVVKLLAGS-T-TSTVLPFT  221 (260)
T ss_dssp             TEEEEECTTTCCEE-ECCC-------S----SCCSEEEEE-ECTT---CC-EEEEETTTTEEEEECTTC-S-CCEECCCC
T ss_pred             ccccccccccceee-eeec-------c----ccCCCccce-eeee---ee-eeeeecCCCEEEEEeCCC-C-eEEEEccC
Confidence            88999998765433 2221       1    122345665 8876   54 777777788899888764 2 222222 2


Q ss_pred             cccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870          251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDH  283 (291)
Q Consensus       251 h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~  283 (291)
                      .-....+|+++++|+++++-..++.|+..+...
T Consensus       222 ~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         222 GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence            234678999999999888877778777666543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.00  E-value=1.1e-06  Score=67.00  Aligned_cols=207  Identities=9%  Similarity=0.032  Sum_probs=121.4

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC----CeEEEEECCC
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD----GTVKCWDIEN   95 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~   95 (291)
                      .+-.++|.++|++.++-..++.|..|+.+.++....+....  .....+++.+  +|+++++...+    +.+...+...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~--~~p~gla~~~--dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHK--DGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS--SSEEEEEECT--TSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC--CCeeEEEECC--CCCEEEEecCCCccceeEEEEcCCC
Confidence            35688999999988888889999999987766555443333  3378999999  98777664332    2344444443


Q ss_pred             CCCCCCCccc-cccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC-----
Q 022870           96 GGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-----  169 (291)
Q Consensus        96 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----  169 (291)
                      .....  ... .........                                       +++.++|+ ++++...     
T Consensus       117 ~~~~~--~~~~~~~~~~~nd---------------------------------------~~~d~~G~-l~vtd~~~~~~~  154 (319)
T d2dg1a1         117 DNLQD--IIEDLSTAYCIDD---------------------------------------MVFDSKGG-FYFTDFRGYSTN  154 (319)
T ss_dssp             CSCEE--EECSSSSCCCEEE---------------------------------------EEECTTSC-EEEEECCCBTTB
T ss_pred             ceeee--eccCCCcccCCcc---------------------------------------eeEEeccc-eeeccccccccc
Confidence            32211  000 000000000                                       45778885 4432211     


Q ss_pred             CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc
Q 022870          170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK  249 (291)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~  249 (291)
                      ..+.+..++...+. +..+..            .-.....+. |+|+   ++.+.++-+..+.|+.||+...+.......
T Consensus       155 ~~g~v~~~~~dg~~-~~~~~~------------~~~~pnGia-~s~d---g~~lyvad~~~~~I~~~d~~~~g~~~~~~~  217 (319)
T d2dg1a1         155 PLGGVYYVSPDFRT-VTPIIQ------------NISVANGIA-LSTD---EKVLWVTETTANRLHRIALEDDGVTIQPFG  217 (319)
T ss_dssp             CCEEEEEECTTSCC-EEEEEE------------EESSEEEEE-ECTT---SSEEEEEEGGGTEEEEEEECTTSSSEEEEE
T ss_pred             CcceeEEEecccce-eEEEee------------ccceeeeee-eccc---cceEEEecccCCceEEEEEcCCCceecccc
Confidence            12335555554332 222211            011234565 9998   442556667789999999875343322211


Q ss_pred             -------ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          250 -------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       250 -------~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                             ......-.|+++.+|++.++....+.|.+++. .++++..+
T Consensus       218 ~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i  264 (319)
T d2dg1a1         218 ATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  264 (319)
T ss_dssp             EEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             ceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEE
Confidence                   11223578999999998888888999999996 56766543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.94  E-value=1.6e-07  Score=73.04  Aligned_cols=260  Identities=9%  Similarity=-0.014  Sum_probs=131.4

Q ss_pred             CccceeEEEEcCCCCEEEEecCCCeEEEEeCCC-CeEEEEEeeecCCcceEEEEEeecCCCCeE--EEEe-CCCeEEEEE
Q 022870           17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKV--ISQG-RDGTVKCWD   92 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l--~s~~-~dg~i~iwd   92 (291)
                      ....+.-|+|+|++++|+++.. +.+..|.+.. +.... ...+........+.+++  +++.+  +++. ..++|..+.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~-~~~~~~~~~p~~v~~~~--~~~~~~v~~a~~~~~~v~~~~  113 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVH-EASHPIGGHPRANDADT--NTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEE-EEEEECCSSGGGGCTTS--CCEEEEEEECSSTTCCEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEE-EeeecCCCCcEEEEECC--CCCEEEEEEecCCCCEEEEeE
Confidence            3445677999999999987754 5677777653 33322 22221112245677777  76643  3322 235555544


Q ss_pred             CCCCCC------------CCCCccc---cccceEEEEEeecccCccceeccCCCCceeeecccCcccc-----ccCCCCC
Q 022870           93 IENGGL------------SSNPSLT---IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD-----TDSLCDS  152 (291)
Q Consensus        93 ~~~~~~------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  152 (291)
                      +.....            ...+...   -.....+...+++..............+..+.........     .......
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T d1jofa_         114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             ccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCC
Confidence            322110            0000000   0011123444555444333332223334444433222111     1111111


Q ss_pred             C---cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEe--cccccC-----CCCCCCCCcceeeeeEEEecCCCCCCce
Q 022870          153 K---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL--HQNSCG-----GSPNFSSKGRGMCMAVQAYLPSKSQGFV  222 (291)
Q Consensus       153 ~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~g~~  222 (291)
                      .   ++|+|+++.+++ +...++.|.+||+..++.....  ......     ...............+. ++|+   |+ 
T Consensus       194 gPr~i~f~pdg~~~yv-~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~spd---G~-  267 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYA-LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA-LTFS---GK-  267 (365)
T ss_dssp             CEEEEEECTTSSEEEE-EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE-ECTT---SS-
T ss_pred             ceEEEEECCCCceEEE-eccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceE-ECCC---CC-
Confidence            2   999999987665 5777899999998765432211  100000     00000111223445565 9998   55 


Q ss_pred             EEEeec-C-----CCcEEEEEccCCCCceeec-----cccccceeEEEeec-CCCeeEEe-cCCCeEEEEEcCCCce
Q 022870          223 NVLAGY-E-----DGSILVWDIRNPGIPLTAM-----KVHLEPVLCLSIDE-SCNGGISG-GADQKIVLYNLDHSTV  286 (291)
Q Consensus       223 ~l~~g~-~-----dg~i~vwd~~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~s~-s~dg~i~vw~~~~~~~  286 (291)
                      +|+++. .     .+.|..|++...+......     .........++++| +|++|+.+ ..++.|.+|+++...+
T Consensus       268 ~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l  344 (365)
T d1jofa_         268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred             EEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcC
Confidence            565543 2     2348788877533322211     11234567899997 78877555 5679999999876543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=1.9e-06  Score=64.16  Aligned_cols=236  Identities=8%  Similarity=0.051  Sum_probs=128.6

Q ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCC----cceEEEEEeecCCCCeEEE-EeCCCeEEEEECC
Q 022870           20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIVSVATGPSIGLNKVIS-QGRDGTVKCWDIE   94 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~   94 (291)
                      .-..++++++|+++++-..++.|++||. +++.+..+......    ..-..+++.+. .+..+++ .+.++.|..++..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCccccccccccccccc-ccccceeccCCcccccccccc
Confidence            3588999999998888778899999995 47777766432111    12345665551 2233433 3445677777754


Q ss_pred             CCCCCCCCccccc-cceEEEEEeecccCccceeccCCCCceeeecccCcccccc--CCCCCC----cccCCCCCcEEEEe
Q 022870           95 NGGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD--SLCDSK----DDVPAEGPKYMAVA  167 (291)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~  167 (291)
                      .... .  .+... ........+..  ....... ......+..+.........  ...+..    +++.+++. +++ +
T Consensus       102 g~~~-~--~~~~~~~~~p~~~avd~--~G~i~v~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v-~  173 (279)
T d1q7fa_         102 GQFV-R--KFGATILQHPRGVTVDN--KGRIIVV-ECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFI-S  173 (279)
T ss_dssp             SCEE-E--EECTTTCSCEEEEEECT--TSCEEEE-ETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEE-E
T ss_pred             ccce-e--ecCCCcccccceecccc--CCcEEEE-eeccceeeEeccCCceeecccccccccccceeeecccee-EEe-e
Confidence            3211 1  00000 01111111111  1111111 1111122222221111111  111111    77888874 444 4


Q ss_pred             cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee-cCCCcEEEEEccCCCCcee
Q 022870          168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~~~~~~~  246 (291)
                      ....+.|++||.. ++.+.++...      +.    ......++ +.|+   |+ ++++- ..++.|.+|+..  ++.+.
T Consensus       174 d~~~~~V~~~d~~-G~~~~~~g~~------g~----~~~P~gia-vD~~---G~-i~Vad~~~~~~v~~f~~~--G~~~~  235 (279)
T d1q7fa_         174 DNRAHCVKVFNYE-GQYLRQIGGE------GI----TNYPIGVG-INSN---GE-ILIADNHNNFNLTIFTQD--GQLIS  235 (279)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCT------TT----SCSEEEEE-ECTT---CC-EEEEECSSSCEEEEECTT--SCEEE
T ss_pred             eccccceeeeecC-Cceeeeeccc------cc----ccCCcccc-cccC---Ce-EEEEECCCCcEEEEECCC--CCEEE
Confidence            5557899999975 4555555311      11    22345665 8887   55 55553 345679999854  77776


Q ss_pred             ecccc--ccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          247 AMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       247 ~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      .+...  ......|+++++|.++++ +.++.|++|.....
T Consensus       236 ~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         236 ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence            66432  245789999999986655 57899999998764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.74  E-value=2.1e-06  Score=64.80  Aligned_cols=208  Identities=7%  Similarity=-0.033  Sum_probs=118.1

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      ...+......+.+++|+++|+++++...++.+.+|+..... ....+...........+.+.+  +++++++-+.++.+.
T Consensus        60 ~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~--~g~~~v~~~~~~~i~  137 (302)
T d2p4oa1          60 QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIW  137 (302)
T ss_dssp             EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEE
T ss_pred             EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc--CCCEEeeccccccce
Confidence            44455567789999999999988888888888887754322 122222222224478999999  888888888888888


Q ss_pred             EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-cccCCCCCcEEEEec
Q 022870           90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAG  168 (291)
Q Consensus        90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g  168 (291)
                      .+|...+....             ...........                      ....... ..+.+++..+++ +.
T Consensus       138 ~~~~~~~~~~~-------------~~~~~~~~~~~----------------------~~~~~~~~ngi~~~~~~l~~-~~  181 (302)
T d2p4oa1         138 LIDVVQPSGSI-------------WLEHPMLARSN----------------------SESVFPAANGLKRFGNFLYV-SN  181 (302)
T ss_dssp             EEETTTTEEEE-------------EEECGGGSCSS----------------------TTCCSCSEEEEEEETTEEEE-EE
T ss_pred             eeeccCCccee-------------EecCCccceee----------------------ccCcccccccccccCCceee-ec
Confidence            88877653110             00000000000                      0000000 112233445554 45


Q ss_pred             CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870          169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM  248 (291)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~  248 (291)
                      +..+.|..++.............      ..    ....-.++ |.++   |. ++++...++.|..++.......+...
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~------~~----~~~pdgia-~d~d---G~-l~va~~~~~~V~~i~p~G~~~~~~~~  246 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKPGEPEIF------VE----QTNIDDFA-FDVE---GN-LYGATHIYNSVVRIAPDRSTTIIAQA  246 (302)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEE------EE----SCCCSSEE-EBTT---CC-EEEECBTTCCEEEECTTCCEEEEECG
T ss_pred             CCCCeEEeccccccccccccccc------cC----CCCCcceE-ECCC---CC-EEEEEcCCCcEEEECCCCCEEEEEec
Confidence            55788988887754332211100      00    11123354 8887   54 67777778899999876311123334


Q ss_pred             cccccceeEEEe---ecCCCeeEEec
Q 022870          249 KVHLEPVLCLSI---DESCNGGISGG  271 (291)
Q Consensus       249 ~~h~~~v~~~~~---~~~~~~l~s~s  271 (291)
                      ...-..+++++|   ++|++.|..++
T Consensus       247 ~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         247 EQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             GGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             CCCCCCceEEEEcCCCCCCCEEEEEC
Confidence            434456899999   56777775544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.70  E-value=2.4e-06  Score=66.24  Aligned_cols=76  Identities=13%  Similarity=0.114  Sum_probs=52.3

Q ss_pred             ceeEEEEcCCCCEEEEecC-CCeEEEEeCCC-CeEE--EEEeeecCCcceEEEEEeecCCCCeEEE-EeCCCeEEEEECC
Q 022870           20 SVTDVCFHQTKPILFAGTT-GGELRIWDTVQ-HRTV--SSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDGTVKCWDIE   94 (291)
Q Consensus        20 ~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~   94 (291)
                      .+.++.|+|+|++++++.. ...|.+|+... +...  ..............++|+|  +++++++ ...+++|.+|++.
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p--dg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP--TGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC--CCceEEEeccCCCEEEEEEec
Confidence            3689999999998877643 45788887553 3322  2222221114578999999  9888765 4468899999997


Q ss_pred             CCC
Q 022870           95 NGG   97 (291)
Q Consensus        95 ~~~   97 (291)
                      ..+
T Consensus       224 ~~~  226 (365)
T d1jofa_         224 PAT  226 (365)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.59  E-value=5.2e-05  Score=57.36  Aligned_cols=202  Identities=12%  Similarity=0.036  Sum_probs=109.3

Q ss_pred             EEecCCccceeEEEEcCCCCEEEEecC----CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC--
Q 022870           12 AVLRGHRASVTDVCFHQTKPILFAGTT----GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--   85 (291)
Q Consensus        12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--   85 (291)
                      ..+.........++++++|+++++...    .+.+...+.....................+++.+  +|++.++-...  
T Consensus        75 ~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~--~G~l~vtd~~~~~  152 (319)
T d2dg1a1          75 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS--KGGFYFTDFRGYS  152 (319)
T ss_dssp             EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT--TSCEEEEECCCBT
T ss_pred             EEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe--ccceeeccccccc
Confidence            333344556788999999987776533    2345555655544443333222223467888998  87766553221  


Q ss_pred             ----CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870           86 ----GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP  161 (291)
Q Consensus        86 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (291)
                          +.+..++.......     .+      ...+   ..+                             ..++|+|+++
T Consensus       153 ~~~~g~v~~~~~dg~~~~-----~~------~~~~---~~p-----------------------------nGia~s~dg~  189 (319)
T d2dg1a1         153 TNPLGGVYYVSPDFRTVT-----PI------IQNI---SVA-----------------------------NGIALSTDEK  189 (319)
T ss_dssp             TBCCEEEEEECTTSCCEE-----EE------EEEE---SSE-----------------------------EEEEECTTSS
T ss_pred             ccCcceeEEEecccceeE-----EE------eecc---cee-----------------------------eeeeeccccc
Confidence                12333333221110     00      0000   000                             0167999998


Q ss_pred             cEEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          162 KYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       162 ~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      .+++ +-+..+.|..||+.... .........     ..........-.++ +.++   |. +.++...++.|.+||.. 
T Consensus       190 ~lyv-ad~~~~~I~~~d~~~~g~~~~~~~~~~-----~~~~~~~~~PdGl~-vD~~---G~-l~Va~~~~g~V~~~~p~-  257 (319)
T d2dg1a1         190 VLWV-TETTANRLHRIALEDDGVTIQPFGATI-----PYYFTGHEGPDSCC-IDSD---DN-LYVAMYGQGRVLVFNKR-  257 (319)
T ss_dssp             EEEE-EEGGGTEEEEEEECTTSSSEEEEEEEE-----EEECCSSSEEEEEE-EBTT---CC-EEEEEETTTEEEEECTT-
T ss_pred             eEEE-ecccCCceEEEEEcCCCceecccccee-----eeccCCccceeeee-EcCC---CC-EEEEEcCCCEEEEECCC-
Confidence            7765 44457899999976432 111111000     00000111233454 7766   55 66777788999999964 


Q ss_pred             CCCceeecc------ccccceeEEEeecCCCeeEEec
Q 022870          241 PGIPLTAMK------VHLEPVLCLSIDESCNGGISGG  271 (291)
Q Consensus       241 ~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~s  271 (291)
                       ++.+..+.      ++...+++++|.+.+..++..+
T Consensus       258 -G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         258 -GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             -SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             -CcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence             77776664      3344688999988776665544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.55  E-value=1.6e-05  Score=58.95  Aligned_cols=160  Identities=13%  Similarity=0.121  Sum_probs=103.9

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG   97 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~   97 (291)
                      ......+++.++|.++++....+.+.+++. +++.+..+...........+++.+  +++.+++....+.|++||.....
T Consensus       113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~--~g~i~v~d~~~~~V~~~d~~G~~  189 (279)
T d1q7fa_         113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVND--KQEIFISDNRAHCVKVFNYEGQY  189 (279)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECS--SSEEEEEEGGGTEEEEEETTCCE
T ss_pred             ccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecc--ceeEEeeeccccceeeeecCCce
Confidence            445678888888888888788888888885 567777664443334578899998  88888888888999999976431


Q ss_pred             CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC-CcccCCCCCcEEEEecCCcCeEEE
Q 022870           98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS-KDDVPAEGPKYMAVAGEQLSEVEI  176 (291)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~d~~i~~  176 (291)
                      .     .++....                                    . ..+. .++++++|+ ++++-...++.|.+
T Consensus       190 ~-----~~~g~~g------------------------------------~-~~~P~giavD~~G~-i~Vad~~~~~~v~~  226 (279)
T d1q7fa_         190 L-----RQIGGEG------------------------------------I-TNYPIGVGINSNGE-ILIADNHNNFNLTI  226 (279)
T ss_dssp             E-----EEESCTT------------------------------------T-SCSEEEEEECTTCC-EEEEECSSSCEEEE
T ss_pred             e-----eeecccc------------------------------------c-ccCCcccccccCCe-EEEEECCCCcEEEE
Confidence            1     1110000                                    0 0000 066889996 44433333567999


Q ss_pred             EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN  240 (291)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~  240 (291)
                      |+. +++.+..+...        .  .......++ +.|+   |.  |+++..++.|++|...+
T Consensus       227 f~~-~G~~~~~~~~~--------~--~~~~p~~va-v~~d---G~--l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         227 FTQ-DGQLISALESK--------V--KHAQCFDVA-LMDD---GS--VVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             ECT-TSCEEEEEEES--------S--CCSCEEEEE-EETT---TE--EEEEETTTEEEEEECSC
T ss_pred             ECC-CCCEEEEEeCC--------C--CCCCEeEEE-EeCC---Cc--EEEEeCCCeEEEEEeee
Confidence            985 57776666521        0  112356665 8887   54  44556789999999876

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=9.2e-06  Score=65.01  Aligned_cols=207  Identities=10%  Similarity=0.065  Sum_probs=118.1

Q ss_pred             EEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC-CcceEEEEEeecCCCCeEEEEe---------CCCeEEEEEC
Q 022870           24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQG---------RDGTVKCWDI   93 (291)
Q Consensus        24 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~---------~dg~i~iwd~   93 (291)
                      ..|.+++.++.. ..+|.|.+||+.+++....+....- ...+....|+|  |+++++...         ..+.+.+||+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp--D~~~vl~~~~~~~~~r~s~~~~~~i~d~   98 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKI   98 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECC--CCCeEEEEEcccceeEeeccccEEEEEc
Confidence            468888876654 5678999999988766444443221 12477888999  999887653         3567888888


Q ss_pred             CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCe
Q 022870           94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE  173 (291)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~  173 (291)
                      .++....  +.........   +                                   ....|+|+|+.++.+.   ++.
T Consensus        99 ~~~~~~~--l~~~~~~~~~---l-----------------------------------~~~~wSPDG~~iafv~---~~n  135 (465)
T d1xfda1          99 PHGDPQS--LDPPEVSNAK---L-----------------------------------QYAGWGPKGQQLIFIF---ENN  135 (465)
T ss_dssp             SSCCCEE--CCCTTCCSCC---C-----------------------------------SBCCBCSSTTCEEEEE---TTE
T ss_pred             cCCceee--ccCccCCccc---c-----------------------------------ceeeeccCCceEEEEe---cce
Confidence            8775321  1000000000   0                                   0045999999887654   467


Q ss_pred             EEEEeCCCcceeeEecccccCCCCCCCCC-------------cceeeeeEEEecCCCCCCceEEEeec-CCC--------
Q 022870          174 VEIWDLNTAERCTRLHQNSCGGSPNFSSK-------------GRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--------  231 (291)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg--------  231 (291)
                      |.+.+...+...+....       +-...             ..+.-.++- |+|+   |+ +||... .+.        
T Consensus       136 l~~~~~~~~~~~~lt~~-------g~~~~i~nG~~d~vyeee~~~~~~a~~-WSPD---gk-~iaf~~~D~s~V~~~~~~  203 (465)
T d1xfda1         136 IYYCAHVGKQAIRVVST-------GKEGVIYNGLSDWLYEEEILKTHIAHW-WSPD---GT-RLAYAAINDSRVPIMELP  203 (465)
T ss_dssp             EEEESSSSSCCEEEECC-------CBTTTEEEEECCHHHHHTTSSSSEEEE-ECTT---SS-EEEEEEEECTTSCEEEEC
T ss_pred             EEEEecCCCceEEEecc-------cCcceeeccccchhhhhhhccccceEE-ECCC---CC-eEEEEEecccccceeecc
Confidence            99999887765544432       11110             011123444 8998   44 555542 222        


Q ss_pred             -------------------------cEEEEEccCCCCceee-----ccccccceeEEEeecCCCeeEEecC----CCeEE
Q 022870          232 -------------------------SILVWDIRNPGIPLTA-----MKVHLEPVLCLSIDESCNGGISGGA----DQKIV  277 (291)
Q Consensus       232 -------------------------~i~vwd~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~l~s~s~----dg~i~  277 (291)
                                               .+.++|+.+.......     ......-+..+.|.+++++++....    ...|.
T Consensus       204 ~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~  283 (465)
T d1xfda1         204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILT  283 (465)
T ss_dssp             CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEE
T ss_pred             cccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEE
Confidence                                     3445555432111111     1112234678899999886665332    23688


Q ss_pred             EEEcCCCceee
Q 022870          278 LYNLDHSTVSH  288 (291)
Q Consensus       278 vw~~~~~~~~~  288 (291)
                      ++|..+++...
T Consensus       284 ~~d~~tg~~~~  294 (465)
T d1xfda1         284 LCDATTGVCTK  294 (465)
T ss_dssp             EEETTTCCEEE
T ss_pred             EEcCCCCcEEE
Confidence            88998887543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.33  E-value=0.00024  Score=52.97  Aligned_cols=200  Identities=8%  Similarity=0.016  Sum_probs=119.2

Q ss_pred             EEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCC
Q 022870           23 DVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN  101 (291)
Q Consensus        23 ~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  101 (291)
                      +..|++ ++.+..+--..+.|..||.++++.. .+...   ..+.++++.+  ++.++++ +.+ -|.++|..+++... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~---~~~~~i~~~~--dg~l~va-~~~-gl~~~d~~tg~~~~-   92 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALP---FMGSALAKIS--DSKQLIA-SDD-GLFLRDTATGVLTL-   92 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECS---SCEEEEEEEE--TTEEEEE-ETT-EEEEEETTTCCEEE-
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECC---CCcEEEEEec--CCCEEEE-EeC-ccEEeecccceeeE-
Confidence            456877 5556666667789999999887643 33322   3488999988  8665554 555 58899998875421 


Q ss_pred             Cccccccce--EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC---CcCeEEE
Q 022870          102 PSLTIKTNS--YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE---QLSEVEI  176 (291)
Q Consensus       102 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~d~~i~~  176 (291)
                       ........  .....                                      +.+.|+|...+. +..   ..+.-.+
T Consensus        93 -l~~~~~~~~~~~~nd--------------------------------------~~vd~~G~iw~~-~~~~~~~~~~g~l  132 (295)
T d2ghsa1          93 -HAELESDLPGNRSND--------------------------------------GRMHPSGALWIG-TMGRKAETGAGSI  132 (295)
T ss_dssp             -EECSSTTCTTEEEEE--------------------------------------EEECTTSCEEEE-EEETTCCTTCEEE
T ss_pred             -EeeeecCCCccccee--------------------------------------eEECCCCCEEEE-eccccccccceeE
Confidence             11111000  00000                                      346778864442 221   1234456


Q ss_pred             EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc-------eeecc
Q 022870          177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP-------LTAMK  249 (291)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~-------~~~~~  249 (291)
                      |.+..++.......             ......+. |+|+   +..++++-+..+.|+.|++......       ...+.
T Consensus       133 ~~~~~g~~~~~~~~-------------~~~~Ng~~-~s~d---~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~  195 (295)
T d2ghsa1         133 YHVAKGKVTKLFAD-------------ISIPNSIC-FSPD---GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST  195 (295)
T ss_dssp             EEEETTEEEEEEEE-------------ESSEEEEE-ECTT---SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT
T ss_pred             eeecCCcEEEEeec-------------cCCcceee-ecCC---CceEEEeecccceeeEeeecccccccccceEEEeccC
Confidence            66666654433331             11234454 9988   4436677788899999987531111       11222


Q ss_pred             ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      +..+...+++++.+|++.++.-..+.|..||. .++++..
T Consensus       196 ~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~  234 (295)
T d2ghsa1         196 GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIAR  234 (295)
T ss_dssp             TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEE
T ss_pred             cccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeE
Confidence            33456789999999997777667789999995 4666554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=0.00021  Score=52.19  Aligned_cols=179  Identities=12%  Similarity=0.088  Sum_probs=94.8

Q ss_pred             eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC---eEEEEECCCCCCCCCCccccccceEEEEEee
Q 022870           41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (291)
Q Consensus        41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (291)
                      .|.|-|....+.. .+..+.  ..+.+-+|+|  ||+.|+-.....   .+.+.+........  ..........     
T Consensus        20 ~l~i~d~dG~~~~-~l~~~~--~~~~sP~wSP--DGk~IAf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----   87 (269)
T d2hqsa1          20 ELRVSDYDGYNQF-VVHRSP--QPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNGA-----   87 (269)
T ss_dssp             EEEEEETTSCSCE-EEEEES--SCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCEEE--EECCSSCEEE-----
T ss_pred             EEEEEcCCCCCcE-EEecCC--CceeeeEECC--CCCEEEEEEeeccCcceeeeecccCceeE--Eeeeeccccc-----
Confidence            5788887644444 343344  4489999999  999998654332   35555655543211  1111111111     


Q ss_pred             cccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEE--eCCCcceeeEecccccCC
Q 022870          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW--DLNTAERCTRLHQNSCGG  195 (291)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~w--d~~~~~~~~~~~~~~~~~  195 (291)
                                                          ..|+|+|..++..... ++...++  ............      
T Consensus        88 ------------------------------------~~~spdg~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~------  124 (269)
T d2hqsa1          88 ------------------------------------PAFSPDGSKLAFALSK-TGSLNLYVMDLASGQIRQVTD------  124 (269)
T ss_dssp             ------------------------------------EEECTTSSEEEEEECT-TSSCEEEEEETTTCCEEECCC------
T ss_pred             ------------------------------------ceecCCCCeeeEeeec-CCccceeecccccccceeeee------
Confidence                                                3489999887765443 3333333  222222222211      


Q ss_pred             CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC-
Q 022870          196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ-  274 (291)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-  274 (291)
                         .    ........ ++++   +...+++...+|...+|...........+..+........|+|+++.++..+.++ 
T Consensus       125 ---~----~~~~~~~~-~~~~---~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  193 (269)
T d2hqsa1         125 ---G----RSNNTEPT-WFPD---SQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG  193 (269)
T ss_dssp             ---C----SSCEEEEE-ECTT---SSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             ---c----cccccccc-cccc---cccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCC
Confidence               1    11112222 6655   3325666666665444444332344455555667778889999999988766553 


Q ss_pred             --eEEEEEcCCCc
Q 022870          275 --KIVLYNLDHST  285 (291)
Q Consensus       275 --~i~vw~~~~~~  285 (291)
                        .+.+.+...+.
T Consensus       194 ~~~i~~~~~~~~~  206 (269)
T d2hqsa1         194 QQHIAKQDLATGG  206 (269)
T ss_dssp             CEEEEEEETTTCC
T ss_pred             ceeeeEeeccccc
Confidence              44455555443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.25  E-value=0.00018  Score=52.74  Aligned_cols=68  Identities=13%  Similarity=0.005  Sum_probs=46.7

Q ss_pred             EEcCC--CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CC-----eEEEEECCCC
Q 022870           25 CFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG-----TVKCWDIENG   96 (291)
Q Consensus        25 ~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg-----~i~iwd~~~~   96 (291)
                      ..+|+  |+.++-.+ +|.|.+.|+..++.. .+..+.  ..+...+|+|  ||+.|+-... ++     .|.+++..++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~--~~~~~p~~SP--DG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNL--GVINNARFFP--DGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSS--SEEEEEEECT--TSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCC--CcccCEEECC--CCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            35688  88887654 467888899887765 344444  3488999999  9998885432 22     4777777766


Q ss_pred             CC
Q 022870           97 GL   98 (291)
Q Consensus        97 ~~   98 (291)
                      +.
T Consensus        79 ~~   80 (281)
T d1k32a2          79 EI   80 (281)
T ss_dssp             EE
T ss_pred             ce
Confidence            53

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=7.4e-05  Score=59.61  Aligned_cols=76  Identities=7%  Similarity=-0.071  Sum_probs=53.9

Q ss_pred             cceeEEEEcCCCCEEEEe---------cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870           19 ASVTDVCFHQTKPILFAG---------TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK   89 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~---------~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~   89 (291)
                      -.+....||||+++++..         +..+.+.++|+.++..............+....|+|  +|+.++-.. ++.|.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP--DG~~iafv~-~~nl~  137 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP--KGQQLIFIF-ENNIY  137 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS--STTCEEEEE-TTEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeecc--CCceEEEEe-cceEE
Confidence            356778899999988765         345788999998876543322222223466789999  999988766 46788


Q ss_pred             EEECCCCC
Q 022870           90 CWDIENGG   97 (291)
Q Consensus        90 iwd~~~~~   97 (291)
                      +.+..++.
T Consensus       138 ~~~~~~~~  145 (465)
T d1xfda1         138 YCAHVGKQ  145 (465)
T ss_dssp             EESSSSSC
T ss_pred             EEecCCCc
Confidence            88877654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.19  E-value=0.00024  Score=53.41  Aligned_cols=199  Identities=10%  Similarity=0.021  Sum_probs=103.6

Q ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCC---cceEEEEEeecCCCCeEEEEeC-------------
Q 022870           21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA---HGIVSVATGPSIGLNKVISQGR-------------   84 (291)
Q Consensus        21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~~~-------------   84 (291)
                      -..++|.+++..++++...+.+...+.+.+... .+......   .....+++.+  +|++.++-..             
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~-~~~~~~~g~~~~~pndl~~d~--~G~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEE-IAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEE-CCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEE-EEeccccccccCCCcEEEECC--CCCEEEecCccCcccccccceec
Confidence            456999999988887777777888897654322 22211110   1246789999  8877776322             


Q ss_pred             --CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCcc--ceecc--CCCCceeeecccCccc-----cccCCCCC-
Q 022870           85 --DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY--ANAKQ--ANEPKDCYEREVGETV-----DTDSLCDS-  152 (291)
Q Consensus        85 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~-  152 (291)
                        +|.|..++.+. +...  . ...........+.......  .....  ....+..+++......     ...+.... 
T Consensus       150 ~~~G~v~~~~~dg-~~~~--~-~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  225 (314)
T d1pjxa_         150 EKFGSIYCFTTDG-QMIQ--V-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             SSCEEEEEECTTS-CEEE--E-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             cCCceEEEEeecC-ceeE--e-eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc
Confidence              23343343322 1100  0 0000011112222222111  11111  2222233333322111     11112111 


Q ss_pred             ---C-cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec
Q 022870          153 ---K-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY  228 (291)
Q Consensus       153 ---~-~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~  228 (291)
                         . +++..+|+.+++  ....+.|.+||.+.++....+..        .    .....+++ |.|+   ++.++++.+
T Consensus       226 ~~pdGiavD~~GnlyVa--~~~~g~I~~~dp~~g~~~~~i~~--------p----~~~~t~~a-fg~d---~~~lyVt~~  287 (314)
T d1pjxa_         226 GGADGMDFDEDNNLLVA--NWGSSHIEVFGPDGGQPKMRIRC--------P----FEKPSNLH-FKPQ---TKTIFVTEH  287 (314)
T ss_dssp             CEEEEEEEBTTCCEEEE--EETTTEEEEECTTCBSCSEEEEC--------S----SSCEEEEE-ECTT---SSEEEEEET
T ss_pred             ccceeeEEecCCcEEEE--EcCCCEEEEEeCCCCEEEEEEEC--------C----CCCEEEEE-EeCC---CCEEEEEEC
Confidence               1 888999864443  33358899999988877666652        1    12345665 9886   443667778


Q ss_pred             CCCcEEEEEccCCCCc
Q 022870          229 EDGSILVWDIRNPGIP  244 (291)
Q Consensus       229 ~dg~i~vwd~~~~~~~  244 (291)
                      .+|.|..+++..+++.
T Consensus       288 ~~g~i~~~~~~~~G~~  303 (314)
T d1pjxa_         288 ENNAVWKFEWQRNGKK  303 (314)
T ss_dssp             TTTEEEEEECSSCBCC
T ss_pred             CCCcEEEEECCCCChh
Confidence            8899999998765543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.16  E-value=0.00019  Score=52.37  Aligned_cols=111  Identities=9%  Similarity=0.035  Sum_probs=70.2

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI  233 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i  233 (291)
                      +++.+++.. ++ +...+..+..++............       +.     .....+. +.|+   |. ++++...++.|
T Consensus       103 iavd~~g~i-~v-~d~~~~~~~~~~~~~~~~~~~~~~-------~~-----~~p~~i~-~~~~---g~-~~v~~~~~~~i  163 (260)
T d1rwia_         103 LAVDTQGAV-YV-ADRGNNRVVKLAAGSKTQTVLPFT-------GL-----NDPDGVA-VDNS---GN-VYVTDTDNNRV  163 (260)
T ss_dssp             EEECTTCCE-EE-EEGGGTEEEEECTTCSSCEECCCC-------SC-----CSCCEEE-ECTT---CC-EEEEEGGGTEE
T ss_pred             cccccccee-Ee-eccccccccccccccceeeeeeec-------cc-----CCcceee-ecCC---CC-Eeeeccccccc
Confidence            777887753 33 333456677777655432221110       11     1223454 7776   54 77777888899


Q ss_pred             EEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870          234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS  284 (291)
Q Consensus       234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~  284 (291)
                      ..+|... ..........-.....|+++++++++++....+.|..++....
T Consensus       164 ~~~d~~~-~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         164 VKLEAES-NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             EEECTTT-CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             ccccccc-ceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            9999875 3322222234456789999999998888888888988877654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.12  E-value=0.00073  Score=50.21  Aligned_cols=190  Identities=12%  Similarity=0.082  Sum_probs=109.6

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeec--CCcceEEEEEeecCCCCeEEEEeCC----CeEEEE
Q 022870           18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS--AAHGIVSVATGPSIGLNKVISQGRD----GTVKCW   91 (291)
Q Consensus        18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iw   91 (291)
                      ...+.++++.++|.++++ +.+ .+.++|..+++.........  ....+..+.+.|  +|++.++...+    +.-.+|
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~--~G~iw~~~~~~~~~~~~g~l~  133 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIY  133 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC--CCCEEEEeccccccccceeEe
Confidence            456788999889866665 444 58899998887544332211  113478888888  87766654322    233444


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (291)
                      .+..++...  +  .       ..+.   .+                             ..++|+++++.+++ +.+..
T Consensus       134 ~~~~g~~~~--~--~-------~~~~---~~-----------------------------Ng~~~s~d~~~l~~-~dt~~  169 (295)
T d2ghsa1         134 HVAKGKVTK--L--F-------ADIS---IP-----------------------------NSICFSPDGTTGYF-VDTKV  169 (295)
T ss_dssp             EEETTEEEE--E--E-------EEES---SE-----------------------------EEEEECTTSCEEEE-EETTT
T ss_pred             eecCCcEEE--E--e-------eccC---Cc-----------------------------ceeeecCCCceEEE-eeccc
Confidence            444332110  0  0       0000   00                             00568899887665 45557


Q ss_pred             CeEEEEeCCCcce-----eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870          172 SEVEIWDLNTAER-----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT  246 (291)
Q Consensus       172 ~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~  246 (291)
                      +.|..|++.....     ...+..         .....+..-.++ +..+   |. +.++....+.|..||..  ++.+.
T Consensus       170 ~~I~~~~~d~~~~~~~~~~~~~~~---------~~~~~g~pdG~~-vD~~---Gn-lWva~~~~g~V~~~dp~--G~~~~  233 (295)
T d2ghsa1         170 NRLMRVPLDARTGLPTGKAEVFID---------STGIKGGMDGSV-CDAE---GH-IWNARWGEGAVDRYDTD--GNHIA  233 (295)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEE---------CTTSSSEEEEEE-ECTT---SC-EEEEEETTTEEEEECTT--CCEEE
T ss_pred             ceeeEeeecccccccccceEEEec---------cCcccccccceE-EcCC---CC-EEeeeeCCCceEEecCC--CcEee
Confidence            8899998753211     111110         011133445554 7665   54 55555567889999965  78888


Q ss_pred             eccccccceeEEEee-cCCCee-EEec
Q 022870          247 AMKVHLEPVLCLSID-ESCNGG-ISGG  271 (291)
Q Consensus       247 ~~~~h~~~v~~~~~~-~~~~~l-~s~s  271 (291)
                      .+.-....+++++|- ++.+.| +|..
T Consensus       234 ~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         234 RYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            887656779999994 565544 4433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.66  E-value=0.0018  Score=49.80  Aligned_cols=30  Identities=0%  Similarity=-0.073  Sum_probs=24.3

Q ss_pred             ceeEEEeecCCCeeEEe-cCCCeEEEEEcCC
Q 022870          254 PVLCLSIDESCNGGISG-GADQKIVLYNLDH  283 (291)
Q Consensus       254 ~v~~~~~~~~~~~l~s~-s~dg~i~vw~~~~  283 (291)
                      ....+..+|||++++++ ..+.++.|.|+++
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            45788999999998655 4689999999864

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.57  E-value=0.0093  Score=45.84  Aligned_cols=70  Identities=19%  Similarity=0.121  Sum_probs=47.7

Q ss_pred             eeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC-------Cce----eeccccccceeEEEeecCCCeeEEecCCCeE
Q 022870          208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-------IPL----TAMKVHLEPVLCLSIDESCNGGISGGADQKI  276 (291)
Q Consensus       208 ~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-------~~~----~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i  276 (291)
                      ..+. .+|+   |++.+++|..+.++.|+|++...       .+.    .+... .-....-+|+.+|+...|---|.+|
T Consensus       278 HGV~-vSPD---GKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el-glgPLht~fd~~g~aytslfids~v  352 (459)
T d1fwxa2         278 HGCN-MAPD---KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQV  352 (459)
T ss_dssp             CCEE-ECTT---SSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEE
T ss_pred             CceE-ECCC---CCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc-CcCccccccCCCceEEEEeeccceE
Confidence            3444 8888   77677788889999999997421       111    11111 1234556899999866677789999


Q ss_pred             EEEEcC
Q 022870          277 VLYNLD  282 (291)
Q Consensus       277 ~vw~~~  282 (291)
                      .-|++.
T Consensus       353 ~kw~~~  358 (459)
T d1fwxa2         353 VKWNIE  358 (459)
T ss_dssp             EEEEHH
T ss_pred             EEEecc
Confidence            999985

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.54  E-value=0.0061  Score=44.19  Aligned_cols=74  Identities=8%  Similarity=0.054  Sum_probs=48.5

Q ss_pred             CCCceEEecCCccceeEEEEcCCCCEEEEec----CC--CeEEEEeCCCCeEEEEEeee----cCCcceEEEEEeecCCC
Q 022870            7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGT----TG--GELRIWDTVQHRTVSSSWVH----SAAHGIVSVATGPSIGL   76 (291)
Q Consensus         7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~----~d--g~v~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~   76 (291)
                      .+...+.|..+.+.+...+|||||+.||-..    .+  ..|.+++...++........    ..........|+|  +|
T Consensus        29 ~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp--dg  106 (281)
T d1k32a2          29 KSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP--DG  106 (281)
T ss_dssp             TTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT--TC
T ss_pred             CCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCC--CC
Confidence            3444566777888899999999999887542    22  24777888777655421111    0002256788999  98


Q ss_pred             CeEEEE
Q 022870           77 NKVISQ   82 (291)
Q Consensus        77 ~~l~s~   82 (291)
                      +.|+..
T Consensus       107 ~~l~~~  112 (281)
T d1k32a2         107 NLIIST  112 (281)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            888764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.016  Score=41.86  Aligned_cols=212  Identities=5%  Similarity=-0.075  Sum_probs=120.6

Q ss_pred             ecCCccceeEEEEcCCCCEEE-EecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEE
Q 022870           14 LRGHRASVTDVCFHQTKPILF-AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCW   91 (291)
Q Consensus        14 l~~h~~~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw   91 (291)
                      +..+...+.+++|....+.++ +-..++.|+..+++.+.....+....  ..+.++++..  -++.|+ +-...+.|.+.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~--~~p~~iAvD~--~~~~lY~~d~~~~~I~~~  106 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL--GSPEGIALDH--LGRTIFWTDSQLDRIEVA  106 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC--CCEEEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecc--ccccEEEEec--cCCeEEEeccCCCEEEEE
Confidence            444556688899998665554 44667889888887554443333222  3378899876  445555 55567789999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC-C
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-Q  170 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~  170 (291)
                      ++.......  +..........                                        ++++|....++.+... .
T Consensus       107 ~~dg~~~~~--l~~~~l~~p~~----------------------------------------l~vdp~~g~ly~t~~~~~  144 (263)
T d1npea_         107 KMDGTQRRV--LFDTGLVNPRG----------------------------------------IVTDPVRGNLYWTDWNRD  144 (263)
T ss_dssp             ETTSCSCEE--EECSSCSSEEE----------------------------------------EEEETTTTEEEEEECCSS
T ss_pred             ecCCceEEE--EecccccCCcE----------------------------------------EEEecccCcEEEeecCCC
Confidence            987553211  11100000000                                        4566776666654322 2


Q ss_pred             cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc
Q 022870          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (291)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (291)
                      ...|.--++...........       +     .....+++ +.+..  ++ +.++-...+.|...|+.. ......+.+
T Consensus       145 ~~~I~r~~~dG~~~~~i~~~-------~-----~~~P~gla-iD~~~--~~-lYw~d~~~~~I~~~~~~g-~~~~~v~~~  207 (263)
T d1npea_         145 NPKIETSHMDGTNRRILAQD-------N-----LGLPNGLT-FDAFS--SQ-LCWVDAGTHRAECLNPAQ-PGRRKVLEG  207 (263)
T ss_dssp             SCEEEEEETTSCCCEEEECT-------T-----CSCEEEEE-EETTT--TE-EEEEETTTTEEEEEETTE-EEEEEEEEC
T ss_pred             CcEEEEecCCCCCceeeeee-------c-----ccccceEE-EeecC--cE-EEEEeCCCCEEEEEECCC-CCeEEEECC
Confidence            23455556654433222221       1     12345555 76652  32 445556778999999874 333223333


Q ss_pred             cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870          251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV  290 (291)
Q Consensus       251 h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~  290 (291)
                      - ....+|++.. +.+..+-...+.|...|..+++.++.+
T Consensus       208 ~-~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         208 L-QYPFAVTSYG-KNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             C-CSEEEEEEET-TEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             C-CCcEEEEEEC-CEEEEEECCCCEEEEEECCCCccceEE
Confidence            2 3346888874 444456556788999999988877654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=0.019  Score=41.80  Aligned_cols=238  Identities=11%  Similarity=0.086  Sum_probs=131.2

Q ss_pred             EEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCc
Q 022870           24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS  103 (291)
Q Consensus        24 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  103 (291)
                      .-.+|..+.||.-+ ..++.++|+++.+.++.+...   ++|.--.|-.  + +.|+-... ..|+-|+++....   |.
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis--~-~~L~lVT~-taVYHW~~~g~s~---P~  136 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS--L-NTVALVTD-NAVYHWSMEGESQ---PV  136 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEESS--S-SEEEEECS-SEEEEEESSSSCC---CE
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC---CCcEEEEecC--C-CEEEEEcC-CceEEEcccCCCC---ch
Confidence            34567777776655 458999999999998887765   4477777775  4 66666654 4799999965431   22


Q ss_pred             cc------cccceEEEEEeecccCccceeccCCC----CceeeecccCccccccCCCCCC--ccc----CCCCCcEEEE-
Q 022870          104 LT------IKTNSYHFCKLSLVKEPYANAKQANE----PKDCYEREVGETVDTDSLCDSK--DDV----PAEGPKYMAV-  166 (291)
Q Consensus       104 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~-  166 (291)
                      .-      +.......-..+..............    .+.+--....+.....+++|..  ..+    .+....+++. 
T Consensus       137 k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa  216 (327)
T d1utca2         137 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFA  216 (327)
T ss_dssp             EEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEE
T ss_pred             hhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEE
Confidence            11      11112222222222222211111111    1111222333444555666655  222    2222233332 


Q ss_pred             -ecCCcCeEEEEeCCCcce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870          167 -AGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP  244 (291)
Q Consensus       167 -~g~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~  244 (291)
                       -+...+.+++.++..... -..+.......+ -.+........++. .++..  |  .+..-+.-|.|++||+.+ +.+
T Consensus       217 ~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~-fppea~~DFPvamq-vs~ky--g--iiyviTK~G~i~lyDleT-gt~  289 (327)
T d1utca2         217 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF-FPPEAQNDFPVAMQ-ISEKH--D--VVFLITKYGYIHLYDLET-GTC  289 (327)
T ss_dssp             EEETTEEEEEEEECSCCCTTCCCCCCEEEECC-CCTTCTTCCEEEEE-EETTT--T--EEEEEETTSEEEEEETTT-CCE
T ss_pred             ECCCCCcEEEEEEcCCCccCCCCCcceeEEEE-CCccccCCcEEEEE-eeccC--C--EEEEEecCcEEEEEEccc-ccE
Confidence             233346888888865321 111110000000 11122456677776 77652  3  788888999999999999 888


Q ss_pred             eeeccccccceeEEEeecCCCeeEEecCCCeEEEE
Q 022870          245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY  279 (291)
Q Consensus       245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  279 (291)
                      +..-+-..+.|..-+-+.+..-+++...+|.|.--
T Consensus       290 i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~v  324 (327)
T d1utca2         290 IYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV  324 (327)
T ss_dssp             EEEEECCSSCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             EEEeecCCCceEEeccCCCCceEEEECCCCeEEEE
Confidence            87777667777766666655556666678876543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.07  E-value=0.052  Score=44.00  Aligned_cols=67  Identities=15%  Similarity=0.158  Sum_probs=42.5

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeeecCC--cceEEEEEeecCCCCeEEEEe------CCCeEEEEECCCCCCCC
Q 022870           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAA--HGIVSVATGPSIGLNKVISQG------RDGTVKCWDIENGGLSS  100 (291)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~  100 (291)
                      ..++.++.||.+.--|.++|+.+.........  ..+++--...  + +.++.+.      .+|.|+-+|+++++.+.
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~--~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W  190 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--K-DTVLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--T-TEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe--C-CeEEEeeccccccccCcEEEEECCCCcEEE
Confidence            36777889999999999999987766432210  1111111112  3 4445444      36789999999998654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.78  E-value=0.097  Score=42.56  Aligned_cols=69  Identities=14%  Similarity=0.180  Sum_probs=44.9

Q ss_pred             CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC------CCeEEEEECCCCCCCC
Q 022870           31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR------DGTVKCWDIENGGLSS  100 (291)
Q Consensus        31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~  100 (291)
                      .+++.++.|+.|.-.|.++|+.+..+....... -..+.-.|..-++.++.+..      .|.|+-+|.++++.+.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~-~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W  196 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKV-GSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVW  196 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGG-TCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceecccccccccc-ccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEE
Confidence            468889999999999999999988875422110 11111112112255665543      4889999999998765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.60  E-value=0.12  Score=41.63  Aligned_cols=56  Identities=16%  Similarity=0.151  Sum_probs=37.7

Q ss_pred             CcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870          231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH  288 (291)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~  288 (291)
                      |.|.-||+.+ ++.+.+... ..+..+=...-.+.+++.|+.||.++-+|.++|+.+=
T Consensus       438 G~l~A~D~~t-Gk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW  493 (560)
T d1kv9a2         438 GALLAWDPVK-QKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (560)
T ss_dssp             EEEEEEETTT-TEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cceEEEeCCC-CeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeE
Confidence            5677888887 666665542 2222221222334477889999999999999999873

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.32  E-value=0.11  Score=37.71  Aligned_cols=222  Identities=10%  Similarity=0.061  Sum_probs=120.4

Q ss_pred             CCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEee
Q 022870           38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS  117 (291)
Q Consensus        38 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  117 (291)
                      ...+|.|-|+.++..+..-...     --+.-.+|  ..+.|+.-+ ..++.++|+++.+.+.  ...+... ....  .
T Consensus        43 ~~~~VvIidl~n~~~~~Rrpi~-----AdsAIMhP--~~~IiALra-g~~LQiFnletK~klk--s~~~~e~-VvfW--k  109 (327)
T d1utca2          43 EQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMK--AHTMTDD-VTFW--K  109 (327)
T ss_dssp             TEEEEEEEETTSTTSCEEEECC-----CSEEEECS--SSSEEEEEE-TTEEEEEETTTTEEEE--EEECSSC-CCEE--E
T ss_pred             CCceEEEEECCCCCcceecccc-----hhhhhcCC--CCcEEEEec-CCeEEEEehhHhhhhc--eEEcCCC-cEEE--E
Confidence            3457888888765533222111     12444678  656665444 5689999999876543  1122211 1111  1


Q ss_pred             cccCccceeccCCCCceeeecccCccccccCCCCCC--------cccCCCCCcEEEEec-----CCcCeEEEEeCCCcce
Q 022870          118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--------DDVPAEGPKYMAVAG-----EQLSEVEIWDLNTAER  184 (291)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g-----~~d~~i~~wd~~~~~~  184 (291)
                      . .++...+.........|+++....+...+..|..        -..+++.+.++++.=     .-.|.+.||..+.+ .
T Consensus       110 W-is~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~  187 (327)
T d1utca2         110 W-ISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-V  187 (327)
T ss_dssp             E-SSSSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-E
T ss_pred             e-cCCCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-c
Confidence            1 1233445556666777777544433333333333        344566666554321     12467889988754 3


Q ss_pred             eeEecccccCCCCCCCCCcceeeeeEEEecCCCCC-CceEEEee---cCCCcEEEEEccCCCC---c-----eeecc---
Q 022870          185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ-GFVNVLAG---YEDGSILVWDIRNPGI---P-----LTAMK---  249 (291)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-g~~~l~~g---~~dg~i~vwd~~~~~~---~-----~~~~~---  249 (291)
                      -+.++        ||..    .   ...+..++.. ....++.+   ...++++|.++..+..   +     +..+-   
T Consensus       188 sQ~ie--------Ghaa----~---F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe  252 (327)
T d1utca2         188 SQPIE--------GHAA----S---FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE  252 (327)
T ss_dssp             EEEEC--------CSEE----E---EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred             Ccccc--------ceee----e---eEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc
Confidence            34454        5521    1   0012211111 11122222   2347899999865221   1     11111   


Q ss_pred             ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .-.+-..++..++.-..+..-+.-|.|+++|++++.+++.
T Consensus       253 a~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         253 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEE
Confidence            1235567888898888898999999999999999998753

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.30  E-value=0.2  Score=40.39  Aligned_cols=76  Identities=12%  Similarity=0.146  Sum_probs=48.4

Q ss_pred             cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc
Q 022870          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (291)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (291)
                      .|.+.-||+.+++.+-+.+..       .  ...+-.++   -.     |. ++++|+.||.++.+|.++ ++.+.+++.
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~-------~--~~~gg~l~---Ta-----gg-lVF~G~~dg~l~A~Da~t-Ge~LW~~~l  497 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYP-------T--HWNGGTLS---TA-----GN-LVFQGTAAGQMHAYSADK-GEALWQFEA  497 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEES-------S--SCCCCEEE---ET-----TT-EEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             ccceEEEeCCCCeEeeeccCC-------C--CCCCceeE---EC-----CC-EEEEECCCCcEEEEECCC-CcEeEEEEC
Confidence            467889999999988777631       1  11111111   11     22 778899999999999999 888887764


Q ss_pred             cccc-eeEEEeecCCC
Q 022870          251 HLEP-VLCLSIDESCN  265 (291)
Q Consensus       251 h~~~-v~~~~~~~~~~  265 (291)
                      .... -.-+.+.-+|+
T Consensus       498 ~~~~~~~P~ty~~dGk  513 (560)
T d1kv9a2         498 QSGIVAAPMTFELAGR  513 (560)
T ss_dssp             SSCCCSCCEEEEETTE
T ss_pred             CCCccccCEEEEECCE
Confidence            2221 11244555664

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.24  E-value=0.22  Score=40.25  Aligned_cols=57  Identities=19%  Similarity=0.201  Sum_probs=36.8

Q ss_pred             CcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       231 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      |.|.-||+.+ ++.+.+.+... +..+=...-.+.+|++|+.||.++.+|.++|+.+-.
T Consensus       457 G~l~AiD~~t-Gk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~  513 (573)
T d1kb0a2         457 GRLLAWDPVA-QKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE  513 (573)
T ss_dssp             EEEEEEETTT-TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccEEEeCCCC-CceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEE
Confidence            3566777776 66665554321 211111222455788899999999999999998743

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.18  E-value=0.16  Score=38.31  Aligned_cols=76  Identities=12%  Similarity=0.129  Sum_probs=48.0

Q ss_pred             cceeEEEEcCCCCEEEEecCC-----C------eEEEEeCCCCeEEE--EEee-ecCCcceEEEEEeecCCCCeEEEEeC
Q 022870           19 ASVTDVCFHQTKPILFAGTTG-----G------ELRIWDTVQHRTVS--SSWV-HSAAHGIVSVATGPSIGLNKVISQGR   84 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l~s~~~d-----g------~v~iwd~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~   84 (291)
                      .++.......+|+.++.|+.+     +      .+.+||..+++-..  .+.. +.  ......++.+  ++.+++.|+.
T Consensus        20 ~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~--~~~~~~~~~~--~g~i~v~Gg~   95 (387)
T d1k3ia3          20 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD--MFCPGISMDG--NGQIVVTGGN   95 (387)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC--CSSCEEEECT--TSCEEEECSS
T ss_pred             cccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcc--cceeEEEEec--CCcEEEeecC
Confidence            344444455688888887742     1      37799998765322  2221 22  1134567778  8888888766


Q ss_pred             C-CeEEEEECCCCCC
Q 022870           85 D-GTVKCWDIENGGL   98 (291)
Q Consensus        85 d-g~i~iwd~~~~~~   98 (291)
                      + ..+.+||..+...
T Consensus        96 ~~~~~~~yd~~~~~w  110 (387)
T d1k3ia3          96 DAKKTSLYDSSSDSW  110 (387)
T ss_dssp             STTCEEEEEGGGTEE
T ss_pred             CCcceeEecCccCcc
Confidence            5 5899999887654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.05  E-value=0.27  Score=39.64  Aligned_cols=96  Identities=13%  Similarity=0.082  Sum_probs=59.3

Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (291)
                      |.+.-||+.+++.+-+.+..       .  +..+...+   ..     |. ++++|+.||.++.+|.++ ++.+.+++..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~-------~--p~~gg~ls---ta-----gg-lVF~G~~dg~l~A~Da~T-Ge~LW~~~~~  517 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV-------S--PWNGGTLT---TA-----GN-VVFQGTADGRLVAYHAAT-GEKLWEAPTG  517 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES-------S--SCCCCEEE---ET-----TT-EEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             ccEEEeCCCCCceEeeecCC-------C--CCCCceEE---Ec-----CC-EEEEECCCCeEEEEECCC-CcEeEEEECC
Confidence            67999999999988877631       1  11122221   22     33 788899999999999999 8888877642


Q ss_pred             ccce-eEEEeecCCC-ee--EEec--------------CCCeEEEEEcCCCce
Q 022870          252 LEPV-LCLSIDESCN-GG--ISGG--------------ADQKIVLYNLDHSTV  286 (291)
Q Consensus       252 ~~~v-~~~~~~~~~~-~l--~s~s--------------~dg~i~vw~~~~~~~  286 (291)
                      .... .=+.|.-+|+ ||  ++|.              ..+.|.+|.+.....
T Consensus       518 ~~~~~~P~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~~  570 (573)
T d1kb0a2         518 TGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKAR  570 (573)
T ss_dssp             SCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCC
T ss_pred             CCccccCEEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcCC
Confidence            2211 1144545665 33  2331              124688888876543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.55  E-value=0.3  Score=36.48  Aligned_cols=62  Identities=11%  Similarity=0.166  Sum_probs=42.5

Q ss_pred             CceEEEeecCCCcEEEEEccCCC------CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870          220 GFVNVLAGYEDGSILVWDIRNPG------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD  282 (291)
Q Consensus       220 g~~~l~~g~~dg~i~vwd~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~  282 (291)
                      |..++++...+|.+..|.+...+      +.++.+.. ...+.+|.++.....|..+-++.-|..++.+
T Consensus       142 g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         142 GKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             CCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred             CeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcEEEecCccceEEEEec
Confidence            55577888889999998874312      23334443 4578899999888888888777656555543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.25  Score=35.35  Aligned_cols=210  Identities=10%  Similarity=-0.053  Sum_probs=113.5

Q ss_pred             CccceeEEEEcCCCCEEE-EecCCCeEEEEeCCCCe---EEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEE
Q 022870           17 HRASVTDVCFHQTKPILF-AGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCW   91 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw   91 (291)
                      ....+.+++|++..+.|+ +-..++.|.--++....   ....+... ....+..+++.+  -+..|+ +-...+.|.+.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~p~glAvD~--~~~~lY~~d~~~~~I~v~  104 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDW--IHSNIYWTDSVLGTVSVA  104 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCSCCCEEEEET--TTTEEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC-CCCCcceEEEee--ccceEEEEecCCCEEEeE
Confidence            445677899998666554 44556777766664321   11122111 112366788876  344444 55566789999


Q ss_pred             ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870           92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL  171 (291)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d  171 (291)
                      ++.......  ...........                                        ++++|....++.+-....
T Consensus       105 ~~~g~~~~~--~~~~~~~~P~~----------------------------------------l~vd~~~g~ly~~~~~~~  142 (266)
T d1ijqa1         105 DTKGVKRKT--LFRENGSKPRA----------------------------------------IVVDPVHGFMYWTDWGTP  142 (266)
T ss_dssp             ETTSSSEEE--EEECTTCCEEE----------------------------------------EEEETTTTEEEEEECSSS
T ss_pred             ecCCceEEE--EEcCCCCCcce----------------------------------------EEEEcccCeEEEeccCCC
Confidence            987653211  00100000000                                        446666666665544445


Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec--c
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM--K  249 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~--~  249 (291)
                      +.|...++...........       +     -..+.+++ +.+..  ++ +.++-...+.|...|+.. .......  .
T Consensus       143 ~~I~r~~~dGs~~~~l~~~-------~-----~~~p~gl~-iD~~~--~~-lYw~d~~~~~I~~~~~dG-~~~~~~~~~~  205 (266)
T d1ijqa1         143 AKIKKGGLNGVDIYSLVTE-------N-----IQWPNGIT-LDLLS--GR-LYWVDSKLHSISSIDVNG-GNRKTILEDE  205 (266)
T ss_dssp             CEEEEEETTSCCEEEEECS-------S-----CSCEEEEE-EETTT--TE-EEEEETTTTEEEEEETTS-CSCEEEEECT
T ss_pred             cceeEeccCCCceeccccc-------c-----cceeeEEE-eeccc--cE-EEEecCCcCEEEEEECCC-CCEEEEEeCC
Confidence            6777777765443333321       1     12344555 76652  33 555556778999999874 3322222  2


Q ss_pred             ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870          250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC  289 (291)
Q Consensus       250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~  289 (291)
                      .......+|++..+ .+..+-..++.|...+..+++..+.
T Consensus       206 ~~~~~p~~lav~~~-~ly~td~~~~~I~~~~~~~g~~~~~  244 (266)
T d1ijqa1         206 KRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNL  244 (266)
T ss_dssp             TTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             CcccccEEEEEECC-EEEEEECCCCeEEEEECCCCcceEE
Confidence            22235678888854 4455555778888888877765443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.10  E-value=0.03  Score=45.52  Aligned_cols=56  Identities=25%  Similarity=0.231  Sum_probs=43.1

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCC
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  100 (291)
                      |.|.-+|+.+++.+.....+.   ++.+-..+.  .+.++++|+.||.++-+|.++++.+.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~---p~~~g~lst--agglVF~Gt~dg~l~A~Da~TGe~LW  521 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL---PLWAGVLAT--AGNLVFTGTGDGYFKAFDAKSGKELW  521 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS---CCCSCCEEE--TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC---CCccceeEE--cCCeEEEeCCCCeEEEEECCCCcEeE
Confidence            678889999999888776543   233322344  66888899999999999999998765

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.05  E-value=0.66  Score=37.40  Aligned_cols=77  Identities=12%  Similarity=0.123  Sum_probs=49.6

Q ss_pred             cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc
Q 022870          171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV  250 (291)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  250 (291)
                      .|.+.-+|+.+++.+-+.+.       +..  ..+-..     ...   |. ++++|+.||.++.+|.++ ++.+.+++-
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~-------~~p--~~~g~l-----sta---gg-lVF~Gt~dg~l~A~Da~T-Ge~LW~~~~  525 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKE-------HLP--LWAGVL-----ATA---GN-LVFTGTGDGYFKAFDAKS-GKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEE-------SSC--CCSCCE-----EET---TT-EEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred             CCeEEEEcCCCCcEEeecCC-------CCC--Ccccee-----EEc---CC-eEEEeCCCCeEEEEECCC-CcEeEEEEC
Confidence            36788899999988877763       111  111111     111   33 777899999999999999 999988764


Q ss_pred             cccc-eeEEEeecCCCe
Q 022870          251 HLEP-VLCLSIDESCNG  266 (291)
Q Consensus       251 h~~~-v~~~~~~~~~~~  266 (291)
                      .... -.-+.|..+|+.
T Consensus       526 ~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         526 GSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SSCCCSCCEEEEETTEE
T ss_pred             CCCccccCEEEEECCEE
Confidence            2221 112566667753

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.5  Score=33.69  Aligned_cols=179  Identities=10%  Similarity=0.018  Sum_probs=95.9

Q ss_pred             ccceeEEEEcCCCC-EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe--CCCeEEEEECC
Q 022870           18 RASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG--RDGTVKCWDIE   94 (291)
Q Consensus        18 ~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~   94 (291)
                      -..+..|++.+.+. +..+-...+.|.+.++........+....  .....+++.|  ...+|+...  ..+.|.-.++.
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~--~~P~~l~vd~--~~g~ly~~~~~~~~~I~r~~~d  151 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG--SKPRAIVVDP--VHGFMYWTDWGTPAKIKKGGLN  151 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT--CCEEEEEEET--TTTEEEEEECSSSCEEEEEETT
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCC--CCcceEEEEc--ccCeEEEeccCCCcceeEeccC
Confidence            34567788887444 44555667889999987655444444333  3378999998  545555433  33456555555


Q ss_pred             CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeE
Q 022870           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (291)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  174 (291)
                      ......  +..........                                        +++++.++.+..+ -...+.|
T Consensus       152 Gs~~~~--l~~~~~~~p~g----------------------------------------l~iD~~~~~lYw~-d~~~~~I  188 (266)
T d1ijqa1         152 GVDIYS--LVTENIQWPNG----------------------------------------ITLDLLSGRLYWV-DSKLHSI  188 (266)
T ss_dssp             SCCEEE--EECSSCSCEEE----------------------------------------EEEETTTTEEEEE-ETTTTEE
T ss_pred             CCceec--ccccccceeeE----------------------------------------EEeeccccEEEEe-cCCcCEE
Confidence            432110  00000000000                                        4466666666654 4446889


Q ss_pred             EEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccc
Q 022870          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP  254 (291)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~  254 (291)
                      ...|+...........        ...  .....+++ +..    +. +.++-..++.|+..+..+ +.....+......
T Consensus       189 ~~~~~dG~~~~~~~~~--------~~~--~~~p~~la-v~~----~~-ly~td~~~~~I~~~~~~~-g~~~~~~~~~~~~  251 (266)
T d1ijqa1         189 SSIDVNGGNRKTILED--------EKR--LAHPFSLA-VFE----DK-VFWTDIINEAIFSANRLT-GSDVNLLAENLLS  251 (266)
T ss_dssp             EEEETTSCSCEEEEEC--------TTT--TSSEEEEE-EET----TE-EEEEETTTTEEEEEETTT-CCCCEEEECSCSC
T ss_pred             EEEECCCCCEEEEEeC--------CCc--ccccEEEE-EEC----CE-EEEEECCCCeEEEEECCC-CcceEEEEcCCCC
Confidence            9999876544333321        111  11234444 332    22 555556778888888877 5555555544444


Q ss_pred             eeEEEe
Q 022870          255 VLCLSI  260 (291)
Q Consensus       255 v~~~~~  260 (291)
                      +.+|..
T Consensus       252 p~~i~v  257 (266)
T d1ijqa1         252 PEDMVL  257 (266)
T ss_dssp             CCCEEE
T ss_pred             ceEEEE
Confidence            444443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.94  E-value=1.2  Score=35.72  Aligned_cols=76  Identities=17%  Similarity=0.112  Sum_probs=47.1

Q ss_pred             CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc
Q 022870          172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH  251 (291)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h  251 (291)
                      |.|.-+|+++++.+-+...       +..  ..+-.+.   -.     +. ++++|+.||.++.+|.++ ++.+.+++-.
T Consensus       444 G~l~AiD~~TG~~~W~~~~-------~~~--~~~g~l~---Ta-----gg-lVf~G~~dg~l~A~Da~t-Ge~lW~~~l~  504 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWE-------KFA--AWGGTLY---TK-----GG-LVWYATLDGYLKALDNKD-GKELWNFKMP  504 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEE-------SSC--CCSBCEE---ET-----TT-EEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred             ccEEEeccCCCceeeEcCC-------CCC--CCcceeE---ec-----CC-EEEEECCCCeEEEEECCC-CcEEEEEECC
Confidence            6788899999988877653       111  1111111   12     22 777899999999999999 8888777632


Q ss_pred             cc-ceeEEEeecCCCe
Q 022870          252 LE-PVLCLSIDESCNG  266 (291)
Q Consensus       252 ~~-~v~~~~~~~~~~~  266 (291)
                      .. .-.-+.|..+|+.
T Consensus       505 ~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         505 SGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             SCCCSCCEEEEETTEE
T ss_pred             CCceecceEEEECCEE
Confidence            21 1122455456653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.74  E-value=0.37  Score=36.21  Aligned_cols=96  Identities=16%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             eEEEEeCCCcceee--EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC-CcEEEEEccCCCCcee--e
Q 022870          173 EVEIWDLNTAERCT--RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIRNPGIPLT--A  247 (291)
Q Consensus       173 ~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d-g~i~vwd~~~~~~~~~--~  247 (291)
                      .+.+||..+++-..  .+..       .+    ...+.+.. +.++   |+ +++.|+.+ ..+.+||..+ ..-..  .
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~-------~~----~~~~~~~~-~~~~---g~-i~v~Gg~~~~~~~~yd~~~-~~w~~~~~  115 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVT-------KH----DMFCPGIS-MDGN---GQ-IVVTGGNDAKKTSLYDSSS-DSWIPGPD  115 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEEC-------SC----CCSSCEEE-ECTT---SC-EEEECSSSTTCEEEEEGGG-TEEEECCC
T ss_pred             EEEEEECCCCcEeecCCCCC-------Cc----ccceeEEE-EecC---Cc-EEEeecCCCcceeEecCcc-Cccccccc
Confidence            37789998875322  2221       11    12233443 7776   55 66766544 6899999986 32211  1


Q ss_pred             ccccccceeEEEeecCCCeeEEecCC------CeEEEEEcCCCce
Q 022870          248 MKVHLEPVLCLSIDESCNGGISGGAD------QKIVLYNLDHSTV  286 (291)
Q Consensus       248 ~~~h~~~v~~~~~~~~~~~l~s~s~d------g~i~vw~~~~~~~  286 (291)
                      +.. ...-.+.+..+++++++.|+.+      ..+.+||..+.+-
T Consensus       116 ~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         116 MQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             CSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ccc-cccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            111 1223456667788888888753      3689999887653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.48  E-value=1  Score=33.40  Aligned_cols=34  Identities=15%  Similarity=0.060  Sum_probs=26.8

Q ss_pred             ccceeEEEeecCCCee-EEecCCCeEEEEEcCCCc
Q 022870          252 LEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHST  285 (291)
Q Consensus       252 ~~~v~~~~~~~~~~~l-~s~s~dg~i~vw~~~~~~  285 (291)
                      -...++|+++|++++| ++-+..+.|++|+++..+
T Consensus       205 l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         205 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            4568999999998766 555667899999997654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.35  E-value=1.1  Score=33.37  Aligned_cols=113  Identities=15%  Similarity=0.160  Sum_probs=64.2

Q ss_pred             CCCCCcEEEEecCCcCeEEEEeCC---Cc----ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC
Q 022870          157 PAEGPKYMAVAGEQLSEVEIWDLN---TA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE  229 (291)
Q Consensus       157 ~~~~~~~~~~~g~~d~~i~~wd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~  229 (291)
                      ++....+.+.....+|.+..|.+.   .+    +.++.+..             ....-.+. +.+..  +  .|+.+-+
T Consensus       138 ~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-------------~~q~EGCV-vDde~--~--~LyisEE  199 (353)
T d1h6la_         138 SQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-------------NSQTEGMA-ADDEY--G--SLYIAEE  199 (353)
T ss_dssp             CTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-------------SSCEEEEE-EETTT--T--EEEEEET
T ss_pred             cCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-------------CCccceEE-EeCCC--C--cEEEecC
Confidence            555444444456668999888763   22    23344442             11222332 66552  2  7888888


Q ss_pred             CCcEEEEEccCCC----Cceeeccc--cccceeEEEe----ecCCCeeEEecCCCeEEEEEcCCC-cee
Q 022870          230 DGSILVWDIRNPG----IPLTAMKV--HLEPVLCLSI----DESCNGGISGGADQKIVLYNLDHS-TVS  287 (291)
Q Consensus       230 dg~i~vwd~~~~~----~~~~~~~~--h~~~v~~~~~----~~~~~~l~s~s~dg~i~vw~~~~~-~~~  287 (291)
                      +.-|+.++..-..    ..+....+  ..+.+-.|+.    +.+|-+|+|.-.+++..|||.+.. +.+
T Consensus       200 ~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~  268 (353)
T d1h6la_         200 DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYV  268 (353)
T ss_dssp             TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred             ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcccc
Confidence            8777777764211    11222222  3457788876    234555666667899999999874 443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.01  E-value=1  Score=31.99  Aligned_cols=176  Identities=8%  Similarity=0.002  Sum_probs=94.7

Q ss_pred             cceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCCeEEEE--ECC
Q 022870           19 ASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCW--DIE   94 (291)
Q Consensus        19 ~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw--d~~   94 (291)
                      ..+.++++..-+..| .+-...+.|.+.++........+....  .....+++.|  ...+++-.. ..+..+||  ++.
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l--~~p~~l~vdp--~~g~ly~t~~~~~~~~I~r~~~d  154 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL--VNPRGIVTDP--VRGNLYWTDWNRDNPKIETSHMD  154 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SSEEEEEEET--TTTEEEEEECCSSSCEEEEEETT
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccc--cCCcEEEEec--ccCcEEEeecCCCCcEEEEecCC
Confidence            567889998644445 455667899999987554332222222  3478999999  555555332 22233344  443


Q ss_pred             CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeE
Q 022870           95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV  174 (291)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i  174 (291)
                      ......  +.. .......                                       .+++++.++.+..+ -...+.|
T Consensus       155 G~~~~~--i~~-~~~~~P~---------------------------------------glaiD~~~~~lYw~-d~~~~~I  191 (263)
T d1npea_         155 GTNRRI--LAQ-DNLGLPN---------------------------------------GLTFDAFSSQLCWV-DAGTHRA  191 (263)
T ss_dssp             SCCCEE--EEC-TTCSCEE---------------------------------------EEEEETTTTEEEEE-ETTTTEE
T ss_pred             CCCcee--eee-ecccccc---------------------------------------eEEEeecCcEEEEE-eCCCCEE
Confidence            322110  000 0000000                                       05566777666654 3346889


Q ss_pred             EEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc-cccc
Q 022870          175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLE  253 (291)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~h~~  253 (291)
                      ...|+........+.        +..     ...+++ +.-    +. +.++-...+.|...|..+ ++.+..+. ....
T Consensus       192 ~~~~~~g~~~~~v~~--------~~~-----~P~~la-v~~----~~-lYwtd~~~~~I~~~~~~~-g~~~~~~~~~~~~  251 (263)
T d1npea_         192 ECLNPAQPGRRKVLE--------GLQ-----YPFAVT-SYG----KN-LYYTDWKTNSVIAMDLAI-SKEMDTFHPHKQT  251 (263)
T ss_dssp             EEEETTEEEEEEEEE--------CCC-----SEEEEE-EET----TE-EEEEETTTTEEEEEETTT-TEEEEEECCSSCC
T ss_pred             EEEECCCCCeEEEEC--------CCC-----CcEEEE-EEC----CE-EEEEECCCCEEEEEECCC-CccceEECCCCCC
Confidence            999997655433333        211     123454 331    32 555656778899999887 55555443 3334


Q ss_pred             ceeEEEee
Q 022870          254 PVLCLSID  261 (291)
Q Consensus       254 ~v~~~~~~  261 (291)
                      ...+|+.-
T Consensus       252 ~~~gi~v~  259 (263)
T d1npea_         252 RLYGITIA  259 (263)
T ss_dssp             CCCCEEEE
T ss_pred             CcceEEEe
Confidence            55566653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.24  E-value=1.8  Score=33.10  Aligned_cols=77  Identities=4%  Similarity=-0.024  Sum_probs=49.3

Q ss_pred             CccceeEEEEcCCCCEEEEe-----cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC------
Q 022870           17 HRASVTDVCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------   85 (291)
Q Consensus        17 h~~~v~~l~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------   85 (291)
                      +.-.+...+++|+++++|-+     +.-..+++.|+.+++.+...-...   ....++|.+  ++..|+-...+      
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~---~~~~~~W~~--D~~~~~Y~~~~~~~~~~  197 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV---KFSCMAWTH--DGKGMFYNAYPQQDGKS  197 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE---CSCCEEECT--TSSEEEEEECCCCSSCC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc---cccceEEcC--CCCEEEEEEeccccCcc
Confidence            33345567889999988743     223569999999998765321111   135788999  87776643322      


Q ss_pred             ----------CeEEEEECCCCCC
Q 022870           86 ----------GTVKCWDIENGGL   98 (291)
Q Consensus        86 ----------g~i~iwd~~~~~~   98 (291)
                                ..|..|.+.+...
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~  220 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQS  220 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGG
T ss_pred             cccccccCCcceEEEEECCCCcc
Confidence                      2577777776543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.11  E-value=1.6  Score=32.25  Aligned_cols=59  Identities=17%  Similarity=0.166  Sum_probs=34.6

Q ss_pred             eeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc--ccccceeEEEeec-CCCeeEE
Q 022870          206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--VHLEPVLCLSIDE-SCNGGIS  269 (291)
Q Consensus       206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~s  269 (291)
                      ....++ ++|+   ++.++++-+..+.|++|++.. ...+....  .-...+-.+.+++ ++.+.++
T Consensus       207 ~pNGI~-~s~d---~~~lyVa~t~~~~i~~y~~~~-~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         207 FANGIN-ISPD---GKYVYIAELLAHKIHVYEKHA-NWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             SEEEEE-ECTT---SSEEEEEEGGGTEEEEEEECT-TSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             ccceeE-ECCC---CCEEEEEeCCCCeEEEEEeCC-CcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            345565 9998   443667777889999999975 33222111  1134456677765 4443333

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.32  E-value=0.1  Score=42.49  Aligned_cols=56  Identities=14%  Similarity=0.165  Sum_probs=41.3

Q ss_pred             CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCC
Q 022870           40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS  100 (291)
Q Consensus        40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  100 (291)
                      |.|.-||+.+++.+.......   ++.+=..+-  .+.+++.|+.||.++.+|.++++.+.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~---~~~gg~lsT--agglVF~G~~Dg~l~A~Da~TGe~LW  508 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF---AVWGGTMAT--AGDLVFYGTLDGYLKARDSDTGDLLW  508 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS---CCCSBCEEE--TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ceEEEEeCCCCceecccCCCC---CCccceeEe--cCCEEEEECCCCeEEEEECCCCcEee
Confidence            678899999998877654332   233222334  56888899999999999999998765

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.80  E-value=2.8  Score=32.02  Aligned_cols=99  Identities=6%  Similarity=0.050  Sum_probs=55.3

Q ss_pred             cccCCCCCcEEEE---ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC-
Q 022870          154 DDVPAEGPKYMAV---AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-  229 (291)
Q Consensus       154 ~~~~~~~~~~~~~---~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-  229 (291)
                      .+++|++++++.+   .|+..-.++++|+.+++.+.....             ......+. |.++   ++.++.+.-. 
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-------------~~~~~~~~-W~~D---~~~~~Y~~~~~  192 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-------------RVKFSCMA-WTHD---GKGMFYNAYPQ  192 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-------------EECSCCEE-ECTT---SSEEEEEECCC
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-------------cccccceE-EcCC---CCEEEEEEecc
Confidence            4578999877653   244445699999999986542211             01112343 8887   3324444321 


Q ss_pred             --------------CCcEEEEEccCCCCc-eeeccc--cccceeEEEeecCCCeeEE
Q 022870          230 --------------DGSILVWDIRNPGIP-LTAMKV--HLEPVLCLSIDESCNGGIS  269 (291)
Q Consensus       230 --------------dg~i~vwd~~~~~~~-~~~~~~--h~~~v~~~~~~~~~~~l~s  269 (291)
                                    ...|..+.+.+.... ...+..  ....+..+..+.++++++.
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             ccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence                          236888887762211 122222  2234666777889888753

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.48  E-value=7.1  Score=29.92  Aligned_cols=111  Identities=8%  Similarity=-0.012  Sum_probs=55.6

Q ss_pred             cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee-c----
Q 022870          154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-Y----  228 (291)
Q Consensus       154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~----  228 (291)
                      ++|.|+++.++  +-...|.|++++..+++.........    ..+.....+-.+.++ |+|+-.... ++... +    
T Consensus        32 la~~pdg~llV--ter~~G~i~~v~~~~g~~~~i~~~~~----~~~~~~ge~GLLgia-~~Pdf~~n~-~iYvsyt~~~~  103 (450)
T d1crua_          32 LLWGPDNQIWL--TERATGKILRVNPESGSVKTVFQVPE----IVNDADGQNGLLGFA-FHPDFKNNP-YIYISGTFKNP  103 (450)
T ss_dssp             EEECTTSCEEE--EETTTCEEEEECTTTCCEEEEEECTT----CCCCTTSSCSEEEEE-ECTTTTTSC-EEEEEEEEECT
T ss_pred             EEEeCCCeEEE--EEecCCEEEEEECCCCcEeecccCCc----cccccCCCCceeeEE-eCCCCccCC-EEEEEEecCCC
Confidence            78999996443  33235899999988775433222100    011111234567776 999744333 33332 1    


Q ss_pred             --CC----C--cEEEEEccCCCCce-------eecc-ccccceeEEEeecCCCeeEEecC
Q 022870          229 --ED----G--SILVWDIRNPGIPL-------TAMK-VHLEPVLCLSIDESCNGGISGGA  272 (291)
Q Consensus       229 --~d----g--~i~vwd~~~~~~~~-------~~~~-~h~~~v~~~~~~~~~~~l~s~s~  272 (291)
                        .+    +  .+..+.........       ..+. ........|.|.|++.+.++.++
T Consensus       104 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence              11    1  23334433311111       1111 11123568999999987777664

>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Sema domain
family: Sema domain
domain: Semaphorin 3a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.84  E-value=1.9  Score=33.84  Aligned_cols=81  Identities=11%  Similarity=0.183  Sum_probs=49.3

Q ss_pred             CCceEEecCCccceeEEEEcC----C--CCEEEEecCCCeEE-EEeCCCCe-------EEEEEeeecCCcceEEEEEeec
Q 022870            8 PDPVAVLRGHRASVTDVCFHQ----T--KPILFAGTTGGELR-IWDTVQHR-------TVSSSWVHSAAHGIVSVATGPS   73 (291)
Q Consensus         8 ~~~~~~l~~h~~~v~~l~~~~----~--~~~l~s~~~dg~v~-iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~   73 (291)
                      .+++....+.....+.++.+.    +  -..++.|..||.|+ +.-...+.       .+..+.......+|..|.+++ 
T Consensus       393 ~~pll~~~~~~~~~T~iav~~v~~~~~~~tV~flGT~~G~l~Kv~~~~~~~~~~~~~~~iee~~~~~~~~pI~~l~l~~-  471 (495)
T d1q47a_         393 NRPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELST-  471 (495)
T ss_dssp             GSCSEEESSSSSCEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEET-
T ss_pred             CcceEEecCccceeEEEEEEEEeccCCcEEEEEEEcCCCEEEEEEEcCCCCccccceeEEEEEeecCCCCceEEEEEeC-
Confidence            445555555544566666532    2  24678899999876 33322211       233444434446799999999 


Q ss_pred             CCCCeEEEEeCCCeEEE
Q 022870           74 IGLNKVISQGRDGTVKC   90 (291)
Q Consensus        74 ~~~~~l~s~~~dg~i~i   90 (291)
                       ++..|+.++.++.+++
T Consensus       472 -~~~~Lyv~t~~~V~~v  487 (495)
T d1q47a_         472 -KQQQLYIGSTAGVAQL  487 (495)
T ss_dssp             -TTTEEEEEBSSCEEEE
T ss_pred             -CCCEEEEEeCCeEEEE
Confidence             8889999998876654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.59  E-value=6  Score=30.36  Aligned_cols=62  Identities=11%  Similarity=0.133  Sum_probs=42.1

Q ss_pred             eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEee------ecCCcceEEEEEee
Q 022870           11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV------HSAAHGIVSVATGP   72 (291)
Q Consensus        11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~v~~~~~~~   72 (291)
                      +..+...-..-++|+|.|+|++|++--..|.|++++..+++.......      ...+.....|+++|
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             EEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence            333433334667999999999888876679999999877654332211      12224578999998