Citrus Sinensis ID: 022872

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MEEVVSNTCNSSSSSRPPMLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPPSLSHFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAVASKAETNTTSNDNINNNMSPVSALDLLRTGIASRAGLDHFIPTPMPDSNTLFSSGFPLQDIKPAATLSFSIDQANRFGIQDNIGNGSRLFFPFGELKQLSSASTTEVDHHSNKGTSTSTGYWNGMFGGGSW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHHcccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHcccccccccccccccccccEEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccEEEEEcccccccccccccccccccccccccccccEccccccccc
Coil and Loop (DISEMBL)
meevvsntcnsssssrppmlerkarpqeqlncprcnstntkfcyynnysltqpryfcktcrrywteggslrnvpvgggsrknkrsissSAAAAsssnnnnnnnnnynkliipdlnppslshfsshenpkilkggqdlnLGFQVMHNnandmsqyadhpavaskaetnttsndninnnmspvSALDLLRTGIasragldhfiptpmpdsntlfssgfplqdikpaatlsFSIDQANrfgiqdnigngsrlffpfgelkqlssasttevdhhsnkgtststgywngmfgggsw
Flexible Loop (DISEMBL)
meevvsntcnsssssrppmlerkarpqeqlncprcnstntKFCYYNNYSLTQPRYFCKTCRRYWTEggslrnvpvgggsrkNKRSISSSAAaasssnnnnnnNNNYNKLIIPDLNPPSLSHFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAVASKAEtnttsndninnnMSPVSALDLLRTGIASRAGLDHFIPTPMPDSNTLFSSGFPLQDIKPAATLSFSIDQANRFGIQDNIGNGSRLFFPFGELKQLSSasttevdhhsnkgtststgywngMFGGGSW
Low Complexity Region (SEG)
MEEVVSNTCNsssssRPPMLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSIsssaaaasssnnnnnnnnnYNKLIIPDLNPPSLSHFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAVASKAEtnttsndninnnMSPVSALDLLRTGIASRAGLDHFIPTPMPDSNTLFSSGFPLQDIKPAATLSFSIDQANRFGIQDNIGNGSRLFFPFGELKQLSSASTTEVDHHSNKGTSTSTGYWNGMFGGGSW
Disordered region (IsUnstruct)
********************************PRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLR*******************************************************************LGF******************************************LDLLRTGIASRAGLDHFIPT******TLFSSGFPLQDIKPAATLSFSIDQANRFGIQDNIGNGSRLFFPFGEL***********************************
Disordered Region (DISOPRED)
*******************************CPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLR*****************************************************************************************************************************LDHF**************GFPLQDIKP*************************LFFPFGE*************************YWNGMFGGG**
Disordered Region (DISEMBL)
***************************EQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPV**********************NNNNNNNNYNKLIIPDLNPPSLSHFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAVASKAETNTTSNDNINNNMSPVSALDLLRTGIASRAGLDHFIPTPMPDSNTLFSSGFPLQDIKPAATLSFSIDQANRFGIQDNIGNGSRLFFPFGELKQ*****************STSTGYWNGMFGGGSW
Disordered Region (DISPRO)
*************************PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVG****************************************PSLSHFSSHENPKILKGGQDLNLGFQ****************************************ALDLLRTGIASRAGLDHFIPTPMPDSNTLFSSGFPLQDIKPAATLSFSIDQANRFG*****GNGSRLFFPFGELK*********************************W
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEVVSNTCNSSSSSRPPMLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPPSLSHFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAVASKAETNTTSNDNINNNMSPVSALDLLRTGIASRAGLDHFIPTPMPDSNTLFSSGFPLQDIKPAATLSFSIDQANRFGIQDNIGNGSRLFFPFGELKQLSSASTTEVDHHSNKGTSTSTGYWNGMFGGGSW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q9ZPY0	369	Dof zinc finger protein D	no	no	0.848	0.669	0.473	2e-50
Q43385	296	Dof zinc finger protein D	no	no	0.735	0.722	0.467	2e-49
Q8LAP8	342	Dof zinc finger protein D	no	no	0.900	0.766	0.379	4e-42
Q84JQ8	352	Dof zinc finger protein D	no	no	0.938	0.775	0.370	3e-31
Q9M161	294	Dof zinc finger protein D	no	no	0.769	0.761	0.345	2e-29
Q84TE9	257	Dof zinc finger protein D	no	no	0.243	0.276	0.760	2e-28
O24463	328	Dof zinc finger protein P	N/A	no	0.336	0.298	0.535	6e-28
Q9M2U1	323	Dof zinc finger protein D	no	no	0.281	0.253	0.659	1e-27
Q9M1E6	245	Dof zinc finger protein D	no	no	0.261	0.310	0.657	1e-26
Q9LSL6	316	Dof zinc finger protein D	no	no	0.257	0.237	0.666	5e-26

>sp|Q9ZPY0|DOF25_ARATH Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 153/323 (47%), Positives = 188/323 (58%), Gaps = 76/323 (23%)

Query: 21  ERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSR 80
           ERKARPQE+LNCPRCNSTNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNVPVGG SR
Sbjct: 71  ERKARPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSR 130

Query: 81  KNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPPSLSHFSSHENPKILKGGQDLN-L 139
           KNKRS SSS++    +  ++          +PDLNPP L  FS+  + K     QDLN L
Sbjct: 131 KNKRSSSSSSSNILQTIPSS----------LPDLNPPIL--FSNQIHNKSKGSSQDLNLL 178

Query: 140 GFQVM---HNNANDMSQYADHPAVASKAETNTTSNDNINNNMSP-------------VSA 183
            F VM   H++   MSQ+   P +          N NI +   P             VSA
Sbjct: 179 SFPVMQDQHHHHVHMSQFLQMPKME--------GNGNITHQQQPSSSSSVYGSSSSPVSA 230

Query: 184 LDLLRTG--IASRAGLD-HFIPT-PMPDSNTLF--SSGFP-LQDIKPAATLSFSIDQANR 236
           L+LLRTG  ++SR+G++  F+P+  M DSNT+   SSGFP + D KP + LSFS D    
Sbjct: 231 LELLRTGVNVSSRSGINSSFMPSGSMMDSNTVLYTSSGFPTMVDYKP-SNLSFSTDHQ-- 287

Query: 237 FGIQDNIGNGS-----------RLFFPFG-ELKQLSSASTTEVDHHSNKGTST------- 277
            G+  N  N S           R+ FPFG ++K+LSS+ T EVDH  N+   +       
Sbjct: 288 -GLGHNSNNRSEALHSDHHQQGRVLFPFGDQMKELSSSITQEVDHDDNQQQKSHGNNNNN 346

Query: 278 -----STGYWNGMF----GGGSW 291
                + GYW+GMF    GG SW
Sbjct: 347 NNSSPNNGYWSGMFSTTGGGSSW 369

Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.
Arabidopsis thaliana (taxid: 3702)

>sp|Q43385|DOF37_ARATH Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 137/293 (46%), Positives = 160/293 (54%), Gaps = 79/293 (26%)

Query: 19  MLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGG 78
           M  RKARPQE++NCPRCNSTNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNVPVGG 
Sbjct: 63  METRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGS 122

Query: 79  SRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPPSLSHFSSHENPKILKGGQDLN 138
           SRKNKR   SS   AS SN             +PDLNPP L  FSS + P   K  +DLN
Sbjct: 123 SRKNKR---SSTPLASPSNPK-----------LPDLNPPIL--FSS-QIPN--KSNKDLN 163

Query: 139 -LGFQVMHNNANDMSQYADHPAVASKAETNTTSNDNINNNMSPVSALDLLRTGIASRAGL 197
            L F VM ++ +                                 AL+LLR+   S  G+
Sbjct: 164 LLSFPVMQDHHHH--------------------------------ALELLRSNGVSSRGM 191

Query: 198 DHFIPTPMPDSNTLFSS--GFP-LQDIKPA-ATLSFSIDQANRFG---------IQDN-- 242
           + F+P  M DSN++  S  GFP + D K +   LSFSID     G          QDN  
Sbjct: 192 NTFLPGQMMDSNSVLYSSLGFPTMPDYKQSNNNLSFSIDHHQGIGHNTINSNQRAQDNND 251

Query: 243 -IGNGSRLFFPFGELKQLSSASTTEVDHHSNKGTSTSTGYWNGMF---GGGSW 291
            +   SR+ FPF ++K+LS  STT+   H N        YWNGMF   GG SW
Sbjct: 252 DMNGASRVLFPFSDMKELS--STTQEKSHGNN------TYWNGMFSNTGGSSW 296

Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAP8|DOF46_ARATH Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2

 Score =  171 bits (434), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 135/356 (37%), Positives = 179/356 (50%), Gaps = 94/356 (26%)

Query: 1   MEEVVSNTCNSSSSSRPPML-------ERKARPQ--EQLNCPRCNSTNTKFCYYNNYSLT 51
           +EE+V+NTC                  ERKARP+  + +NCPRCNSTNTKFCYYNNYSLT
Sbjct: 15  LEEIVTNTCPKPQPQPLQPQQPPSVGGERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLT 74

Query: 52  QPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNNNNNYNKLII 111
           QPRYFCK CRRYWTEGGSLRN+PVGGGSRKNKRS SSS+  +++ +++            
Sbjct: 75  QPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSHSSSSDISNNHSDST----------- 123

Query: 112 PDLNPPSLSHFSSH--------------ENPKILK-GGQDLNLGFQ---VMHNNANDM-- 151
               P +  H S H              +NPK L+   QDLNLGF    ++  N  D+  
Sbjct: 124 ---QPATKKHLSDHHHHLMSMSQQGLTGQNPKFLETTQQDLNLGFSPHGMIRTNFTDLIH 180

Query: 152 --------SQYADHPAVASKAETNTTSNDNINNNMSPVSALDLLR-TGIASRAGLDHFIP 202
                   S   ++P + S      T            S+LDL+R       +    F+ 
Sbjct: 181 NIGNNTNKSNNNNNPLIVSSCSAMAT------------SSLDLIRNNSNNGNSSNSSFMG 228

Query: 203 TPMPDSNTLFSSGFPLQD-IKPAAT----LSFSIDQANRFGIQ-------------DNIG 244
            P+ + +   S GF +QD  KP  T    L FS+D  +  G               D++ 
Sbjct: 229 FPVHNQDPA-SGGFSMQDHYKPCNTNTTLLGFSLDHHHNNGFHGGFQGGEEGGEGGDDV- 286

Query: 245 NGSRLFFPFGELKQ-LSSASTT---EVDHHSNKGT-----STSTGYWNGMFGGGSW 291
           NG R  FPF +LK  +SS+S T   +++ H  +G+     +TS GYW GM  GGSW
Sbjct: 287 NG-RHLFPFEDLKLPVSSSSATINVDINEHQKRGSGSDAAATSGGYWTGMLSGGSW 341

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JQ8|DOF18_ARATH Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 125/337 (37%), Positives = 177/337 (52%), Gaps = 64/337 (18%)

Query: 1   MEEVVSNTCNSSSSSRP---PMLERKARPQ--EQLNCPRCNSTNTKFCYYNNYSLTQPRY 55
           M E+V+NTC    S+ P     +ERKARP+  + LNCPRCNS NTKFCYYNNYSLTQPRY
Sbjct: 15  MNEIVTNTCLKQQSNPPSPATPVERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRY 74

Query: 56  FCKTCRRYWTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNN----NNNYNKLII 111
           FCK CRRYWT GGSLRN+PVGGG RKNKRS S+S++++ SS++++      NNN     +
Sbjct: 75  FCKDCRRYWTAGGSLRNIPVGGGVRKNKRSSSNSSSSSPSSSSSSKKPLFANNNTPTPPL 134

Query: 112 PDLNPPSLSHFSSHENPKILKGG-------QDLNL----GFQVMHNNANDMSQYADHPAV 160
           P LNP      ++         G       +DLNL    GF + HN+ + + ++     V
Sbjct: 135 PHLNPKIGEAAATKVQDLTFSQGFGNAHEVKDLNLAFSQGFGIGHNHHSSIPEFLQ--VV 192

Query: 161 ASKAETNTTSNDNINNNMSPVSALDLLRTGIASRAGLDHFIPTPMP-----DSNTLFSSG 215
            S +  N       N  +S  S+L+LL  GI+S +   +  P  M      DS+   +SG
Sbjct: 193 PSSSMKN-------NPLVSTSSSLELL--GISSSSASSNSRPAFMSYPNVHDSSVYTASG 243

Query: 216 FPL------QDIKPAATLSFSIDQANRFGIQDNIG--NGSRLFFPFGELKQLSSAST--- 264
           F L      + ++PA  L FS+D  +    ++     N  R   PF  L +L  +S+   
Sbjct: 244 FGLSYPQFQEFMRPA--LGFSLDGGDPLRQEEGSSGTNNGRPLLPFESLLKLPVSSSSTN 301

Query: 265 --------------TEVDHHSNKGTS-TSTGYWNGMF 286
                         ++ +H   +G +  S G+W+GM 
Sbjct: 302 SGGNGNLKENNDEHSDHEHEKEEGEADQSVGFWSGML 338

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M161|DOF41_ARATH Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 124/278 (44%), Gaps = 54/278 (19%)

Query: 19  MLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGG 78
           M     RPQE  NCPRCNS+NTKFCYYNNYSL QPRY CK+CRRYWTEGGSLRNVPVGGG
Sbjct: 57  MTTMSTRPQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGG 116

Query: 79  SRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPPSL--SHFSSHENPKILKGGQD 136
           SRKNK+    +++ +SS+ N            +PDLNPP +  S  SS    K  +   D
Sbjct: 117 SRKNKKLPFPNSSTSSSTKN------------LPDLNPPFVFTSSASSSNPSKTHQNNND 164

Query: 137 LNLGFQVMHNNANDMSQYADHPAVASKAETNTTSNDNINNNMSPVSALDLLRTGIASRAG 196
           L+L F     +      Y            N           +P+  +         R  
Sbjct: 165 LSLSFSSPMQDKRAQGHYGHFSEQVVTGGQNCLF-------QAPMGMIQF-------RQE 210

Query: 197 LDHFIPTPMPDSNTLFSSGFPLQDIKPAATLSFSIDQ-ANRFGIQDNI---GNGSRLFFP 252
            DH                       P   L FS+D+     G  DN      GS++ +P
Sbjct: 211 YDH---------------------EHPKKNLGFSLDRNEEEIGNHDNFVVNEEGSKMMYP 249

Query: 253 FGELKQLSSASTTEVDHHSNKGT-STSTGYWNGMFGGG 289
           +G+ +          D  + K    +S   W+G+  GG
Sbjct: 250 YGDHEDRQQHHHVRHDDGNKKREGGSSNELWSGIILGG 287

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE9|DOF53_ARATH Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/71 (76%), Positives = 62/71 (87%)

Query: 20  LERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGS 79
           + R   P+  L CPRC+STNTKFCYYNNYSLTQPRYFCK+CRRYWT+GG+LRN+PVGGG 
Sbjct: 45  VTRPQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGC 104

Query: 80  RKNKRSISSSA 90
           RKNKRS SS+A
Sbjct: 105 RKNKRSTSSAA 115

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|O24463|PBF_MAIZE Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1

 Score =  124 bits (312), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 61/114 (53%), Positives = 79/114 (69%), Gaps = 16/114 (14%)

Query: 21  ERKARPQ--EQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGG 78
           ERK RPQ  E L CPRC+S NTKFCYYNNYS++QPRYFCK CRRYWT GG+LRNVP+GGG
Sbjct: 49  ERKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGG 108

Query: 79  SRKNKRS------------ISSSAAAASSSNNNNNNNNNYNK--LIIPDLNPPS 118
            RKNK +             S++ A  S S N +++N + NK  +++P++  P+
Sbjct: 109 CRKNKHASRFVLGSHTSSSSSATYAPLSPSTNASSSNMSINKHMMMVPNMTMPT 162

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Zea mays (taxid: 4577)

>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 67/88 (76%), Gaps = 6/88 (6%)

Query: 12  SSSSRPPMLERKAR------PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWT 65
           SS +R   +  +AR      P+  LNCPRC+STNTKFCY+NNYSLTQPR+FCKTCRRYWT
Sbjct: 52  SSQARVNSMVERARIAKVPLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWT 111

Query: 66  EGGSLRNVPVGGGSRKNKRSISSSAAAA 93
            GGSLRNVPVGGG R+NKRS S S +  
Sbjct: 112 RGGSLRNVPVGGGFRRNKRSKSRSKSTV 139

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1E6|DOF32_ARATH Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana GN=DOF3.2 PE=2 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 63/76 (82%)

Query: 16  RPPMLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPV 75
           +P    R A P++ L CPRC+STNTKFCYYNNYSL+QPRYFCK+CRRYWT+GG LRN+P+
Sbjct: 26  KPLSATRPAPPEQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPI 85

Query: 76  GGGSRKNKRSISSSAA 91
           GG  RK+KRS S++ +
Sbjct: 86  GGAYRKHKRSSSATKS 101

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 61/75 (81%)

Query: 12 SSSSRPPMLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLR 71
          +S ++ P     A+ Q+ L CPRCNS NTKFCYYNNYSL+QPR+FCK+CRRYWT GG+LR
Sbjct: 23 TSQTKKPPSSSVAQDQQNLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALR 82

Query: 72 NVPVGGGSRKNKRSI 86
          NVP+GGG RK K+SI
Sbjct: 83 NVPIGGGCRKTKKSI 97

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
224127967	261	predicted protein [Populus trichocarpa]	0.890	0.992	0.610	6e-80
224064314	228	predicted protein [Populus trichocarpa]	0.776	0.991	0.606	4e-78
359489746	299	PREDICTED: dof zinc finger protein DOF2.	0.934	0.909	0.528	3e-66
351722092	281	Dof17 [Glycine max] gi|112363388|gb|ABI1	0.917	0.950	0.488	4e-66
225470954	316	PREDICTED: dof zinc finger protein DOF2.	0.934	0.860	0.528	4e-66
356560258	266	PREDICTED: dof zinc finger protein DOF3.	0.886	0.969	0.488	3e-64
297745500	297	unnamed protein product [Vitis vinifera]	0.828	0.811	0.501	1e-62
224072260	279	f-box family protein [Populus trichocarp	0.841	0.878	0.498	4e-62
225426210	288	PREDICTED: dof zinc finger protein DOF4.	0.907	0.916	0.504	5e-62
388512131	272	unknown [Lotus japonicus]	0.900	0.963	0.488	1e-60

>gi|224127967|ref|XP_002320208.1| predicted protein [Populus trichocarpa] gi|222860981|gb|EEE98523.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (776), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 179/293 (61%), Positives = 210/293 (71%), Gaps = 34/293 (11%)

Query: 1   MEEVVSNTCNSSSSSRPPMLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTC 60
           M+E+ SN+C        P +ERK RPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTC
Sbjct: 1   MDEMASNSCGR------PGVERKPRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTC 54

Query: 61  RRYWTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPPSLS 120
           RRYWTEGGSLRNVPVGGGSRKNKRS SSS A +SS               +PDLNPPSLS
Sbjct: 55  RRYWTEGGSLRNVPVGGGSRKNKRSTSSSVATSSSK--------------LPDLNPPSLS 100

Query: 121 HFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAVASKAETNTTSNDNINNNMSP 180
           HFSS +NPK    GQDLNL F  M  ++  +S Y + P   ++      S+ +   +   
Sbjct: 101 HFSS-QNPKSTHEGQDLNLAFPAMQ-DSQGISHYTEVPKTENRNNNQHNSSSSPYTSSP- 157

Query: 181 VSALDLLRTGIASRAGLDHFIPTPMPDSNTLFSS-GFPLQDIKPAATLSFSIDQ-ANRFG 238
           +SA++LLR+G ASR GL+ FIPTPMPDSNTL+SS GFPLQ+++P  TLSF  D   +R+G
Sbjct: 158 ISAMELLRSGFASR-GLNTFIPTPMPDSNTLYSSGGFPLQELRP--TLSFPADGLGSRYG 214

Query: 239 IQDNIGNGSRLFFPFGELKQLSSASTTEVDHHSNKGTSTSTGYWNGMFGGGSW 291
           IQ+N G   RL FPFGELKQLSS +T+EVD   NKG   S+GYWNGMFGGGSW
Sbjct: 215 IQENSG---RLLFPFGELKQLSS-TTSEVDQ--NKGQGGSSGYWNGMFGGGSW 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064314|ref|XP_002301420.1| predicted protein [Populus trichocarpa] gi|222843146|gb|EEE80693.1| predicted protein [Populus trichocarpa]

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 176/290 (60%), Positives = 201/290 (69%), Gaps = 64/290 (22%)

Query: 4   VVSNTCNSSSSSRPPMLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRY 63
           + SNTC        P+LERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRY
Sbjct: 1   MTSNTCGR------PVLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRY 54

Query: 64  WTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPPSLSHFS 123
           WTEGGSLRNVPVGGGSRKNKRS SSS AA+++ +             +PDLNPP+LSHFS
Sbjct: 55  WTEGGSLRNVPVGGGSRKNKRSTSSSVAASAAPSK------------LPDLNPPNLSHFS 102

Query: 124 SHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAVASKAETNTTSNDNINNNMSPVSA 183
           S +NPK    GQDLNL F  M ++                                   A
Sbjct: 103 S-QNPKSAHEGQDLNLAFPAMQDS----------------------------------QA 127

Query: 184 LDLLRTGIASRAGLDHFIPTPMPDSNTLFSS-GFPLQDIKPAATLSFSID-QANRFGIQD 241
           L+LLR+GIASR GL+ FIPTPMPDSNTL+SS GFPLQ++KP  TLSFS+D   +R+G+Q+
Sbjct: 128 LELLRSGIASR-GLNSFIPTPMPDSNTLYSSGGFPLQELKP--TLSFSLDGLGSRYGVQE 184

Query: 242 NIGNGSRLFFPFGELKQLSSASTTEVDHHSNKGTSTSTGYWNGMFGGGSW 291
           + G   RL FPFGELKQLS  ST EVD +  +GTS STGYWNGMFGGGSW
Sbjct: 185 HNG---RLLFPFGELKQLS--STNEVDQNKGQGTS-STGYWNGMFGGGSW 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489746|ref|XP_003633971.1| PREDICTED: dof zinc finger protein DOF2.5 isoform 2 [Vitis vinifera]

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 157/297 (52%), Positives = 211/297 (71%), Gaps = 25/297 (8%)

Query: 1   MEEVVSNTCNSSSSSRPPMLERKARPQ--EQLNCPRCNSTNTKFCYYNNYSLTQPRYFCK 58
           MEE +S + NS  +   P+LERKARPQ  + +NCPRC+STNTKFCYYNNYSLTQPRYFCK
Sbjct: 1   MEEAISISINSDHTCSKPVLERKARPQKDQAVNCPRCSSTNTKFCYYNNYSLTQPRYFCK 60

Query: 59  TCRRYWTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPPS 118
           TCRRYWTEGG+LRNVPVGGGSRKNKRSI++S++ +SS  ++++      K  +PDLNPP 
Sbjct: 61  TCRRYWTEGGTLRNVPVGGGSRKNKRSITTSSSLSSSLTSSSS-----FKTHLPDLNPPI 115

Query: 119 LSHFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAVASKAETNTTSNDNINNNM 178
           LSHFSS ENP+I +   DLNL F  +    + +SQ+A+ P + +    +++S+ + ++ +
Sbjct: 116 LSHFSS-ENPRIHE-PHDLNLAFP-LPQYYHGISQFAEVPKIENN-NCSSSSSSSSSSTL 171

Query: 179 SPVSALDLLRTGIASRAGLDHFIPTPMPD-SNTLFSSGFPLQDIKPAATLSFSIDQANRF 237
           S +SAL+LL+TGI SR GL  F+P PMPD S+TLF+SGFPLQ+ K    LSFS   A+  
Sbjct: 172 SHLSALELLKTGITSR-GLSSFVPAPMPDSSSTLFTSGFPLQEFK-VPHLSFS---AHLH 226

Query: 238 GI--QDNIGNGSRLFFPFGELKQLSSASTTEVDH-----HSNKGTSTSTGYW-NGMF 286
           G+  Q N+    R+ FPFGE+KQL + ++T VDH     +  +G+  +  YW NGMF
Sbjct: 227 GVDPQQNMSTTGRVLFPFGEVKQLPATTSTGVDHDCSGNNKGQGSPATAAYWNNGMF 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722092|ref|NP_001236720.1| Dof17 [Glycine max] gi|112363388|gb|ABI16018.1| Dof17 [Glycine max]

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 149/305 (48%), Positives = 196/305 (64%), Gaps = 38/305 (12%)

Query: 1   MEEVVSNTCNSSSSSRPPMLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTC 60
           ME +  N+C        P+LE+K RPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTC
Sbjct: 1   MEGMAPNSCAR------PVLEKKTRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTC 54

Query: 61  RRYWTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPP--- 117
           RRYWTEGGSLRNVPVGGGSRKNK+ +S +A+++SS               +PDLNPP   
Sbjct: 55  RRYWTEGGSLRNVPVGGGSRKNKK-VSVTASSSSSPK-------------VPDLNPPINL 100

Query: 118 -SLSHFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYAD-HPAVASKAETNTTSNDNIN 175
            S+S  SS +NPKI+ GGQDLNL F  M    + M  Y +   +  +    +  ++ + +
Sbjct: 101 SSVSAISS-QNPKIMHGGQDLNLAFPAMEKYHHGMPPYVELQNSDTTTTHHHHQTSSSCS 159

Query: 176 NNMSPVSALDLLRTGIASRAGLDHFIPTP--MP---DSNTLFSSGFPLQDIKPAATLSFS 230
              + +SAL+LLR+ +ASR GL+ + P+   MP   +SN L+SSGFP+Q++KP+   S +
Sbjct: 160 APPASLSALELLRSSMASR-GLNPYAPSSSLMPNSTNSNALYSSGFPMQEVKPSLNFSSA 218

Query: 231 IDQANR----FGIQDNIGNGSRLFFPFGELKQLSSASTTEVDHHSNKGTSTSTGYWNGMF 286
               NR      IQ+    G RL FPFG++KQLS+A+  +   H+ +    STGYW GM 
Sbjct: 219 DGMGNRSYDHHQIQER--GGGRLLFPFGDVKQLSAAAGADQVEHNKEQQGNSTGYWTGMI 276

Query: 287 GGGSW 291
           G G+W
Sbjct: 277 GEGTW 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470954|ref|XP_002266221.1| PREDICTED: dof zinc finger protein DOF2.5 isoform 1 [Vitis vinifera] gi|147833319|emb|CAN64100.1| hypothetical protein VITISV_008726 [Vitis vinifera]

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 157/297 (52%), Positives = 211/297 (71%), Gaps = 25/297 (8%)

Query: 1   MEEVVSNTCNSSSSSRPPMLERKARPQ--EQLNCPRCNSTNTKFCYYNNYSLTQPRYFCK 58
           MEE +S + NS  +   P+LERKARPQ  + +NCPRC+STNTKFCYYNNYSLTQPRYFCK
Sbjct: 18  MEEAISISINSDHTCSKPVLERKARPQKDQAVNCPRCSSTNTKFCYYNNYSLTQPRYFCK 77

Query: 59  TCRRYWTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPPS 118
           TCRRYWTEGG+LRNVPVGGGSRKNKRSI++S++ +SS  ++++      K  +PDLNPP 
Sbjct: 78  TCRRYWTEGGTLRNVPVGGGSRKNKRSITTSSSLSSSLTSSSS-----FKTHLPDLNPPI 132

Query: 119 LSHFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAVASKAETNTTSNDNINNNM 178
           LSHFSS ENP+I +   DLNL F  +    + +SQ+A+ P + +    +++S+ + ++ +
Sbjct: 133 LSHFSS-ENPRIHE-PHDLNLAFP-LPQYYHGISQFAEVPKIENN-NCSSSSSSSSSSTL 188

Query: 179 SPVSALDLLRTGIASRAGLDHFIPTPMPD-SNTLFSSGFPLQDIKPAATLSFSIDQANRF 237
           S +SAL+LL+TGI SR GL  F+P PMPD S+TLF+SGFPLQ+ K    LSFS   A+  
Sbjct: 189 SHLSALELLKTGITSR-GLSSFVPAPMPDSSSTLFTSGFPLQEFK-VPHLSFS---AHLH 243

Query: 238 GI--QDNIGNGSRLFFPFGELKQLSSASTTEVDH-----HSNKGTSTSTGYW-NGMF 286
           G+  Q N+    R+ FPFGE+KQL + ++T VDH     +  +G+  +  YW NGMF
Sbjct: 244 GVDPQQNMSTTGRVLFPFGEVKQLPATTSTGVDHDCSGNNKGQGSPATAAYWNNGMF 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560258|ref|XP_003548410.1| PREDICTED: dof zinc finger protein DOF3.7-like [Glycine max]

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/299 (48%), Positives = 184/299 (61%), Gaps = 41/299 (13%)

Query: 1   MEEVVSNTCNSSSSSRPPMLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTC 60
           ME +  N+C        P++E+KARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTC
Sbjct: 1   MEGMAPNSCAR------PVVEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTC 54

Query: 61  RRYWTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPPSLS 120
           RRYWTEGGSLRNVPVGGGSRKNK+    S  A+SS               +PDLNPP+ S
Sbjct: 55  RRYWTEGGSLRNVPVGGGSRKNKK---VSVTASSSPK-------------VPDLNPPNHS 98

Query: 121 HFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAVASKAET-NTTSNDNINNNMS 179
             SSH NPKI+ GGQDLNL F  M        +Y  H       E  N+ +    +++ +
Sbjct: 99  AISSH-NPKIMHGGQDLNLAFPAME-------KYHHHGMSPYNVEMQNSNTTTTHHHHQT 150

Query: 180 PVSALDLLRTGIASRAGLDHFIP--TPMPDSN-----TLFSSGFPLQDIKPAATLSFSID 232
             S+L+LLR+ +ASR GL+ + P  + MP+S       L+ SGFP+Q++KP+   S S+D
Sbjct: 151 SPSSLELLRSSMASR-GLNPYAPNSSLMPNSTNNNNNALYPSGFPMQEVKPSLNFS-SVD 208

Query: 233 QANRFGIQDNIGNGSRLFFPFGELKQLSSASTTEVDHHSNKGTSTSTGYWNGMFGGGSW 291
                   D    G R+ FPFG++KQLS+A+    D    +    STGYW GM G G+W
Sbjct: 209 GIGNNRSYDQERGGGRVLFPFGDVKQLSAAAGA-ADQVEQQQQGNSTGYWTGMIGEGTW 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745500|emb|CBI40580.3| unnamed protein product [Vitis vinifera]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 147/293 (50%), Positives = 190/293 (64%), Gaps = 52/293 (17%)

Query: 1   MEEVVSNTCNSSSSSRPPMLERKARPQ--EQLNCPRCNSTNTKFCYYNNYSLTQPRYFCK 58
           MEE +S + NS  +   P+LERKARPQ  + +NCPRC+STNTKFCYYNNYSLTQPRYFCK
Sbjct: 14  MEEAISISINSDHTCSKPVLERKARPQKDQAVNCPRCSSTNTKFCYYNNYSLTQPRYFCK 73

Query: 59  TCRRYWTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPPS 118
           TCRRYWTEGG+LRNVPVGGGSRKNKRSI++S++ +SS  ++++   +     +PDLNPP 
Sbjct: 74  TCRRYWTEGGTLRNVPVGGGSRKNKRSITTSSSLSSSLTSSSSFKTH-----LPDLNPPI 128

Query: 119 LSHFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAVASKAETNTTSNDNINNNM 178
           LSHFSS ENP+I +   DLNL F  +    + +SQ+A                       
Sbjct: 129 LSHFSS-ENPRIHE-PHDLNLAFP-LPQYYHGISQFA----------------------- 162

Query: 179 SPVSALDLLRTGIASRAGLDHFIPTPMPD-SNTLFSSGFPLQDIKPAATLSFSIDQANRF 237
                 +LL+TGI SR GL  F+P PMPD S+TLF+SGFPLQ+ K    LSFS   A+  
Sbjct: 163 ------ELLKTGITSR-GLSSFVPAPMPDSSSTLFTSGFPLQEFK-VPHLSFS---AHLH 211

Query: 238 GI--QDNIGNGSRLFFPFGELKQLSSASTTEVDH-----HSNKGTSTSTGYWN 283
           G+  Q N+    R+ FPFGE+KQL + ++T VDH     +  +G+  +  YWN
Sbjct: 212 GVDPQQNMSTTGRVLFPFGEVKQLPATTSTGVDHDCSGNNKGQGSPATAAYWN 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072260|ref|XP_002303678.1| f-box family protein [Populus trichocarpa] gi|222841110|gb|EEE78657.1| f-box family protein [Populus trichocarpa]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 155/311 (49%), Positives = 195/311 (62%), Gaps = 66/311 (21%)

Query: 1   MEEVVSNTCNSSSSSRPPMLERKARPQEQ--LNCPRCNSTNTKFCYYNNYSLTQPRYFCK 58
           +EE+V+NTC      +PP LERKARPQ++  LNCPRCNSTNTKFCYYNNYSLTQPRYFCK
Sbjct: 15  IEEIVTNTC-----PKPPALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCK 69

Query: 59  TCRRYWTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPPS 118
           TCRRYWTEGGSLRN+PVGGGSRKNKRS +SS++++                 +PDL  P+
Sbjct: 70  TCRRYWTEGGSLRNIPVGGGSRKNKRSSASSSSSSKK---------------LPDLITPT 114

Query: 119 LSHFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAVASKAETNTTSNDNINNNM 178
               +S +NPKI + GQDLNL F                 ++ S +E     + N NNN 
Sbjct: 115 SLSQTSTQNPKIHE-GQDLNLAFPSTQ-------------SIRSFSELIQVPSINENNNK 160

Query: 179 SPV-------------SALDLLRTGIASRAGLDHFIPTPMPDSNTLFSSGFPLQDIKPAA 225
           +P+             SAL+LL TGI+SR GL+ F P P+ D +TL++S FPL D KP  
Sbjct: 161 NPISSSTSASTTTSQLSALELL-TGISSR-GLNSF-PMPVQDPSTLYTSSFPLHDFKP-- 215

Query: 226 TLSFSID-----QANRFGIQDNIGNGSRLFFPFGELKQLSSASTTEVDHHSNKGTSTSTG 280
           TL+FS+D       +  G+Q+  G   RL FPF +LKQ+S  ST +++H  NK    STG
Sbjct: 216 TLNFSLDGLGSCYGSLQGVQETNG---RLLFPFEDLKQVS--STADIEH--NKEHGDSTG 268

Query: 281 YWNGMFGGGSW 291
           YW GM GGGSW
Sbjct: 269 YWTGMLGGGSW 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426210|ref|XP_002262703.1| PREDICTED: dof zinc finger protein DOF4.6-like [Vitis vinifera]

 Score =  243 bits (621), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 152/301 (50%), Positives = 204/301 (67%), Gaps = 37/301 (12%)

Query: 1   MEEVVSNTCNSSSSSRPPMLERKARPQEQ--LNCPRCNSTNTKFCYYNNYSLTQPRYFCK 58
           +EE+V+NTC        P LE++ARPQ++  LNCPRCNSTNTKFCYYNNYSL+QPRYFCK
Sbjct: 15  LEEIVTNTCPK------PALEKRARPQKEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCK 68

Query: 59  TCRRYWTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNPPS 118
            CRRYWTEGGSLRN+PVGGGSRKNKRS SSS++++SS+++            +PDL PP 
Sbjct: 69  ACRRYWTEGGSLRNIPVGGGSRKNKRSSSSSSSSSSSASSKK----------LPDLVPPG 118

Query: 119 LSHFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAV----ASKAETNTTSNDNI 174
            S  SS +NPKI + GQDLNL F     +   +S++   P++     +   ++ +   + 
Sbjct: 119 CSQ-SSAQNPKIHE-GQDLNLSFPAAQ-DFRSVSEFMQMPSIENSNNNTNNSSKSHITST 175

Query: 175 NNNMSPVSALDLLRTGIASRAGLDHFIPTPMPDSNTLFSSGFPLQDIKPAATLSFSID-Q 233
           ++  S +SAL+LL TGI SR GL+ F+P P+PD NT++++GFP+Q+ KP  TL+FS+D  
Sbjct: 176 SSTSSHLSALELL-TGITSR-GLNSFMPMPIPDPNTVYTTGFPMQEFKP--TLNFSLDGL 231

Query: 234 ANRFG-IQDNIGNGS-RLFFPFGELKQLSSASTTEVDH-HSNKGTSTSTGYWNGMFGGGS 290
            + +G IQ   G+ S RL FPF +LKQ+SS +    DH    +    STGYW GM GGGS
Sbjct: 232 GSGYGSIQGVQGSSSGRLLFPFEDLKQVSSTA----DHIEQTREQGDSTGYWTGMLGGGS 287

Query: 291 W 291
           W
Sbjct: 288 W 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512131|gb|AFK44127.1| unknown [Lotus japonicus]

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 147/301 (48%), Positives = 194/301 (64%), Gaps = 39/301 (12%)

Query: 1   MEEVVSNTCNSSSSSRPPMLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTC 60
           ME +  N+C + +     ++E+K RPQEQ+NCPRCNSTNTKFCYYNNYSLTQPRYFCKTC
Sbjct: 1   MEGIDPNSCVNRT-----VMEKKTRPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTC 55

Query: 61  RRYWTEGGSLRNVPVGGGSRKNKRSISSSAAAASSSNNNNNNNNNYNKLIIPDLNP-PSL 119
           RRYWTEGGSLRNVPVGGGSRKNK+ ++SSAAAA+++  ++          IPDLNP P+ 
Sbjct: 56  RRYWTEGGSLRNVPVGGGSRKNKKVLTSSAAAAAAAAASSKA--------IPDLNPQPTT 107

Query: 120 --SHFSSHENPKILKGGQDLNLGFQVMHNNANDMSQYADHPAVASKAET-NTTSNDNINN 176
             S  S+ +NPK + GGQDLNL F  M N       Y  H  +    E  N   + + + 
Sbjct: 108 LSSSVSNSQNPK-MHGGQDLNLAFPPMEN-------YHHHHGMVPYVEMHNGGDHSSSSA 159

Query: 177 NMSPVSALDLLRTGIASRAGLDHFIP--TPMPDSNTLFSSGFPLQDIKPAATLSFSIDQA 234
             + +SAL+LLR  +ASR G++ + P  + MP++N+L+ SGFP+Q++KP+  L FS+D  
Sbjct: 160 PTNSLSALELLRYSMASR-GMNPYAPNNSLMPNTNSLYPSGFPMQEVKPS--LGFSVDGI 216

Query: 235 NRFGIQDNI---GNGSRLFFPFGE-LKQLSSASTTEVDHHSNKGTSTSTGYWNGMFGGGS 290
                +  +   G G RL FPFG+ +KQLS+    +     NK    STGYW GM G GS
Sbjct: 217 GNRSYEHQVQESGGGGRLLFPFGDHVKQLSAEQVEQ-----NKEQGNSTGYWTGMMGEGS 271

Query: 291 W 291
           W
Sbjct: 272 W 272

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2039959	369	DAG2 "DOF AFFECTING GERMINATIO	0.814	0.642	0.491	1.8e-62
TAIR|locus:2079492	324	DAG1 "dof affecting germinatio	0.230	0.206	0.910	9.9e-56
TAIR|locus:2134981	342	AT4G24060 [Arabidopsis thalian	0.831	0.707	0.394	4.2e-47
TAIR|locus:2019499	352	AT1G64620 [Arabidopsis thalian	0.886	0.732	0.387	4e-39
TAIR|locus:2134658	294	AT4G00940 [Arabidopsis thalian	0.381	0.377	0.552	9.2e-36
TAIR|locus:2144030	257	TMO6 "TARGET OF MONOPTEROS 6"	0.219	0.249	0.796	4.2e-30
TAIR|locus:2032153	325	AT1G28310 [Arabidopsis thalian	0.570	0.510	0.390	5.3e-30
TAIR|locus:2040746	330	DOF2.4 "DNA binding with one f	0.213	0.187	0.774	2.5e-28
TAIR|locus:2085697	245	DOF6 "DOF transcription factor	0.240	0.285	0.7	1.9e-26
TAIR|locus:2155755	316	AT5G65590 [Arabidopsis thalian	0.240	0.221	0.704	3.2e-26

TAIR|locus:2039959 DAG2 "DOF AFFECTING GERMINATION 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
 Identities = 138/281 (49%), Positives = 164/281 (58%)

Query:    21 ERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSR 80
             ERKARPQE+LNCPRCNSTNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNVPVGG SR
Sbjct:    71 ERKARPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSR 130

Query:    81 KNKRSIXXXXXXXXXXXXXXXXXXXYNKLIIPDLNPPSLSHFSSHENPKILKGGQDLNL- 139
             KNKRS                         +PDLNPP L  FS+  + K     QDLNL 
Sbjct:   131 KNKRSSSSSSSNILQTIPSS----------LPDLNPPIL--FSNQIHNKSKGSSQDLNLL 178

Query:   140 GFQVM---HNNANDMSQYADHPAVASKAEXX-----XXXXXXXXXXMSPVSALDLLRTGI 191
              F VM   H++   MSQ+   P +                       SPVSAL+LLRTG+
Sbjct:   179 SFPVMQDQHHHHVHMSQFLQMPKMEGNGNITHQQQPSSSSSVYGSSSSPVSALELLRTGV 238

Query:   192 --ASRAGLDH-FIPT-PMPDSNTLF--SSGFP-LQDIKPAATLSFSIDQANRFGIQDNIG 244
               +SR+G++  F+P+  M DSNT+   SSGFP + D KP+  LSFS D     G+  N  
Sbjct:   239 NVSSRSGINSSFMPSGSMMDSNTVLYTSSGFPTMVDYKPS-NLSFSTDHQ---GLGHNSN 294

Query:   245 NGS-----------RLFFPFGE-LKQLSSASTTEVDHHSNK 273
             N S           R+ FPFG+ +K+LSS+ T EVDH  N+
Sbjct:   295 NRSEALHSDHHQQGRVLFPFGDQMKELSSSITQEVDHDDNQ 335

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009409 "response to cold" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2079492 DAG1 "dof affecting germination 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
 Identities = 61/67 (91%), Positives = 63/67 (94%)

Query:    19 MLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGG 78
             M  RKARPQE++NCPRCNSTNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNVPVGG 
Sbjct:    63 METRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGS 122

Query:    79 SRKNKRS 85
             SRKNKRS
Sbjct:   123 SRKNKRS 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009639 "response to red or far red light" evidence=IMP

TAIR|locus:2134981 AT4G24060 [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
 Identities = 105/266 (39%), Positives = 136/266 (51%)

Query:     1 MEEVVSNTC-----NXXXXXRPPML--ERKARPQEQ--LNCPRCNSTNTKFCYYNNYSLT 51
             +EE+V+NTC           +PP +  ERKARP++   +NCPRCNSTNTKFCYYNNYSLT
Sbjct:    15 LEEIVTNTCPKPQPQPLQPQQPPSVGGERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLT 74

Query:    52 QPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSIXXXXXXXXXXXXXXXXXXXYNKLII 111
             QPRYFCK CRRYWTEGGSLRN+PVGGGSRKNKRS                       L  
Sbjct:    75 QPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRS-HSSSSDISNNHSDSTQPATKKHLSD 133

Query:   112 PDLNPPSLSHFS-SHENPKILKGGQ-DLNLGFQ---VMHNNANDMSQYADHPAVASKAEX 166
                +  S+S    + +NPK L+  Q DLNLGF    ++  N  D+     +    +K+  
Sbjct:   134 HHHHLMSMSQQGLTGQNPKFLETTQQDLNLGFSPHGMIRTNFTDLIHNIGNNT--NKSNN 191

Query:   167 XXXXXXXXXXXMSPVSALDLLRTGIAS-RAGLDHFIPTPMPDSNTLFSSGFPLQD-IKPA 224
                            S+LDL+R    +  +    F+  P+ + +   S GF +QD  KP 
Sbjct:   192 NNNPLIVSSCSAMATSSLDLIRNNSNNGNSSNSSFMGFPVHNQDPA-SGGFSMQDHYKPC 250

Query:   225 AT----LSFSIDQANRFGIQDNIGNG 246
              T    L FS+D  +  G       G
Sbjct:   251 NTNTTLLGFSLDHHHNNGFHGGFQGG 276

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2019499 AT1G64620 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 119/307 (38%), Positives = 150/307 (48%)

Query:     1 MEEVVSNTCNXXXXXRPPM----LERKARPQEQ--LNCPRCNSTNTKFCYYNNYSLTQPR 54
             M E+V+NTC       PP     +ERKARP++   LNCPRCNS NTKFCYYNNYSLTQPR
Sbjct:    15 MNEIVTNTC-LKQQSNPPSPATPVERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPR 73

Query:    55 YFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSIXXXXXXXXXXXXXXXXXXXYNKLIIPDL 114
             YFCK CRRYWT GGSLRN+PVGGG RKNKRS                     N    P  
Sbjct:    74 YFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSSSNSSSSSPSSSSSSKKPLFANNNT-P-- 130

Query:   115 NPPSLSHFSSHENPKILKGG----QDLNL--GFQVMHNNANDM----SQ-----YADHPA 159
              PP L H     NPKI +      QDL    GF   H    D+    SQ     +  H +
Sbjct:   131 TPP-LPHL----NPKIGEAAATKVQDLTFSQGFGNAHE-VKDLNLAFSQGFGIGHNHHSS 184

Query:   160 VASKAEXXXXXXXXXXXXMSPVSALDLLRTGIASRAGLDHFIPTPM--P---DSNTLFSS 214
             +    +            +S  S+L+LL  GI+S +   +  P  M  P   DS+   +S
Sbjct:   185 IPEFLQVVPSSSMKNNPLVSTSSSLELL--GISSSSASSNSRPAFMSYPNVHDSSVYTAS 242

Query:   215 GFPL-----QD-IKPAATLSFSIDQANRFGIQDNIG--NGSRLFFPFGELKQLS-SASTT 265
             GF L     Q+ ++PA  L FS+D  +    ++     N  R   PF  L +L  S+S+T
Sbjct:   243 GFGLSYPQFQEFMRPA--LGFSLDGGDPLRQEEGSSGTNNGRPLLPFESLLKLPVSSSST 300

Query:   266 EVDHHSN 272
                 + N
Sbjct:   301 NSGGNGN 307

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2134658 AT4G00940 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
 Identities = 69/125 (55%), Positives = 78/125 (62%)

Query:    19 MLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGG 78
             M     RPQE  NCPRCNS+NTKFCYYNNYSL QPRY CK+CRRYWTEGGSLRNVPVGGG
Sbjct:    57 MTTMSTRPQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGG 116

Query:    79 SRKNKRSIXXXXXXXXXXXXXXXXXXXYNKLIIPDLNPPSL-SHFSSHENP-KILKGGQD 136
             SRKNK+                      N   +PDLNPP + +  +S  NP K  +   D
Sbjct:   117 SRKNKK---------LPFPNSSTSSSTKN---LPDLNPPFVFTSSASSSNPSKTHQNNND 164

Query:   137 LNLGF 141
             L+L F
Sbjct:   165 LSLSF 169

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2144030 TMO6 "TARGET OF MONOPTEROS 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
 Identities = 51/64 (79%), Positives = 57/64 (89%)

Query:    22 RKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRK 81
             R   P+  L CPRC+STNTKFCYYNNYSLTQPRYFCK+CRRYWT+GG+LRN+PVGGG RK
Sbjct:    47 RPQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRK 106

Query:    82 NKRS 85
             NKRS
Sbjct:   107 NKRS 110

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048364 "root development" evidence=IEP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2032153 AT1G28310 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
 Identities = 71/182 (39%), Positives = 95/182 (52%)

Query:    21 ERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSR 80
             ++  +PQ QL CPRC+S+NTKFCYYNNYSL+QPR+FCK C+RYWT GG+LRNVPVGG  R
Sbjct:    32 QQPQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYR 91

Query:    81 KNKRSIXXXXXXXXXXXXXXXXXXXYNKLIIPDLNPPSLSHFSSHENPKILKGGQDLNLG 140
             KNKR +                    +    P+ NP  +SHFSS  +  +  G  D    
Sbjct:    92 KNKR-VKRPSTATTTTASTVSTTNSSS----PN-NPHQISHFSSMNHHPLFYGLSD---H 142

Query:   141 FQVMHNNANDM-SQYADHPAVASKAEXXXXXXXXXXXXMSPVSALDLLRTGIASRAGLDH 199
                 +NN   + S+++D     S +              S +SAL L   G+  +   DH
Sbjct:   143 MSSCNNNLPMIPSRFSDSSKTCSSS---GLESEFLSSGFSSLSALGL---GLPHQMSHDH 196

Query:   200 FI 201
              I
Sbjct:   197 TI 198

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2040746 DOF2.4 "DNA binding with one finger 2.4" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 48/62 (77%), Positives = 55/62 (88%)

Query:    24 ARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNK 83
             A P+  L CPRC STNTKFCY+NNYSLTQPR+FCKTCRRYWT GG+LRNVPVGGG R+N+
Sbjct:    83 ALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNR 142

Query:    84 RS 85
             R+
Sbjct:   143 RT 144

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2085697 DOF6 "DOF transcription factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query:    16 RPPMLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPV 75
             +P    R A P++ L CPRC+STNTKFCYYNNYSL+QPRYFCK+CRRYWT+GG LRN+P+
Sbjct:    26 KPLSATRPAPPEQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPI 85

Query:    76 GGGSRKNKRS 85
             GG  RK+KRS
Sbjct:    86 GGAYRKHKRS 95

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2155755 AT5G65590 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 50/71 (70%), Positives = 59/71 (83%)

Query:    16 RPPMLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPV 75
             +PP     A+ Q+ L CPRCNS NTKFCYYNNYSL+QPR+FCK+CRRYWT GG+LRNVP+
Sbjct:    28 KPPS-SSVAQDQQNLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPI 86

Query:    76 GGGSRKNKRSI 86
             GGG RK K+SI
Sbjct:    87 GGGCRKTKKSI 97

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
pfam02701	63	pfam02701, zf-Dof, Dof domain, zinc finger	3e-39

>gnl|CDD|111583 pfam02701, zf-Dof, Dof domain, zinc finger

 Score =  131 bits (332), Expect = 3e-39
 Identities = 49/63 (77%), Positives = 54/63 (85%)

Query: 25 RPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKR 84
          +P + L CPRC+S NTKFCYYNNY+L QPRYFCK CRRYWT GG+LRNVPVGGG RKNKR
Sbjct: 1  KPDKALKCPRCDSMNTKFCYYNNYNLNQPRYFCKNCRRYWTAGGALRNVPVGGGRRKNKR 60

Query: 85 SIS 87
          S S
Sbjct: 61 SSS 63

The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
PF02701	63	zf-Dof: Dof domain, zinc finger; InterPro: IPR0038	100.0
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	92.73
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	92.06
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	91.85
COG3677	129	Transposase and inactivated derivatives [DNA repli	91.35
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	88.53
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	85.86
TIGR01384	104	TFS_arch transcription factor S, archaeal. There h	80.69

>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=2.5e-37  Score=233.05  Aligned_cols=63  Identities=79%  Similarity=1.583  Sum_probs=60.2

Q ss_pred             CCccCCCCCCCCCCCcceeeecccCCCCCchhhhccccccccCCccccccCCCCcCCCCCCCC
Q 022872           25 RPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSIS   87 (291)
Q Consensus        25 ~p~~~~~CPRC~S~~TKfcyyNNy~~~QPR~fCk~CrRyWT~GG~lRnvPVGgG~RKnkrsss   87 (291)
                      +|++.++||||+|.||||||||||+++||||||++|+||||+||+|||||||||+||+|+++|
T Consensus         1 ~~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~rywT~GG~lRnVPvggg~Rk~k~~~s   63 (63)
T PF02701_consen    1 KPEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRYWTHGGTLRNVPVGGGCRKNKRSSS   63 (63)
T ss_pred             CCccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHHHHhcceecCCccCCCcccCCcCCC
Confidence            467779999999999999999999999999999999999999999999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=92.73  E-value=0.048  Score=47.09  Aligned_cols=34  Identities=26%  Similarity=0.808  Sum_probs=26.8

Q ss_pred             CCCCCCCCCCCcceeeecccC--CCCCchhhhcccccc
Q 022872           29 QLNCPRCNSTNTKFCYYNNYS--LTQPRYFCKTCRRYW   64 (291)
Q Consensus        29 ~~~CPRC~S~~TKfcyyNNy~--~~QPR~fCk~CrRyW   64 (291)
                      ...||||.|.+|+..  +.+-  .++.-|.|++|+.=+
T Consensus       105 ~~~cp~c~s~~t~~~--s~fg~t~cka~~~c~~c~epf  140 (146)
T TIGR02159       105 SVQCPRCGSADTTIT--SIFGPTACKALYRCRACKEPF  140 (146)
T ss_pred             CCcCCCCCCCCcEee--cCCCChhhHHHhhhhhhCCcH
Confidence            489999999999964  5564  447779999998643

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=92.06  E-value=0.12  Score=36.26  Aligned_cols=29  Identities=41%  Similarity=0.957  Sum_probs=22.5

Q ss_pred             cCCCCCCCCCCCcceeeecccCCCCCchhhhcccc
Q 022872           28 EQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRR   62 (291)
Q Consensus        28 ~~~~CPRC~S~~TKfcyyNNy~~~QPR~fCk~CrR   62 (291)
                      .+..||+|.+.  ++..+.+    +.+|.|++|++
T Consensus        17 ~g~~CP~Cg~~--~~~~~~~----~~~~~C~~C~~   45 (46)
T PF12760_consen   17 DGFVCPHCGST--KHYRLKT----RGRYRCKACRK   45 (46)
T ss_pred             CCCCCCCCCCe--eeEEeCC----CCeEECCCCCC
Confidence            44779999998  5544444    78999999985

It may be a zinc-binding beta ribbon domain that could bind DNA.

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=91.85  E-value=0.094  Score=36.10  Aligned_cols=30  Identities=47%  Similarity=0.885  Sum_probs=21.3

Q ss_pred             CCCCCCCCCCcceeeecccCC-CCCchhhhccc
Q 022872           30 LNCPRCNSTNTKFCYYNNYSL-TQPRYFCKTCR   61 (291)
Q Consensus        30 ~~CPRC~S~~TKfcyyNNy~~-~QPR~fCk~Cr   61 (291)
                      +.||+|.+++.-  |=|-.+. -..||+|++|+
T Consensus         6 v~CP~C~s~~~v--~k~G~~~~G~qryrC~~C~   36 (36)
T PF03811_consen    6 VHCPRCQSTEGV--KKNGKSPSGHQRYRCKDCR   36 (36)
T ss_pred             eeCCCCCCCCcc--eeCCCCCCCCEeEecCcCC
Confidence            789999998821  1333433 36899999996

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=91.35  E-value=0.13  Score=43.53  Aligned_cols=35  Identities=37%  Similarity=0.782  Sum_probs=28.1

Q ss_pred             CCCCCCCCCCcceeeecccCCCCCchhhhcccccccc
Q 022872           30 LNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTE   66 (291)
Q Consensus        30 ~~CPRC~S~~TKfcyyNNy~~~QPR~fCk~CrRyWT~   66 (291)
                      ..||+|.+.+  +-=+.-+.....||.|++|++-|+.
T Consensus        31 ~~cP~C~s~~--~~k~g~~~~~~qRyrC~~C~~tf~~   65 (129)
T COG3677          31 VNCPRCKSSN--VVKIGGIRRGHQRYKCKSCGSTFTV   65 (129)
T ss_pred             CcCCCCCccc--eeeECCccccccccccCCcCcceee
Confidence            7899999999  2225555666999999999999874

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=88.53  E-value=0.39  Score=33.25  Aligned_cols=37  Identities=30%  Similarity=0.823  Sum_probs=27.8

Q ss_pred             CCCCCCCCCCcceeeecccCCCCC---chhhhcccccccc
Q 022872           30 LNCPRCNSTNTKFCYYNNYSLTQP---RYFCKTCRRYWTE   66 (291)
Q Consensus        30 ~~CPRC~S~~TKfcyyNNy~~~QP---R~fCk~CrRyWT~   66 (291)
                      ..||+|...+.-|-..+-.+...|   -|.|..|...|.+
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~~   40 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWRE   40 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeCC
Confidence            369999977777655555555555   3999999999964

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.86  E-value=0.48  Score=32.58  Aligned_cols=36  Identities=28%  Similarity=0.829  Sum_probs=24.4

Q ss_pred             CCCCCCCCCCcceeeecccCCCCCc---hhhhccccccc
Q 022872           30 LNCPRCNSTNTKFCYYNNYSLTQPR---YFCKTCRRYWT   65 (291)
Q Consensus        30 ~~CPRC~S~~TKfcyyNNy~~~QPR---~fCk~CrRyWT   65 (291)
                      .+||.|...+.-|--.+..+...|-   |.|.+|..-|+
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~wr   39 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRWR   39 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCeeC
Confidence            3699999988766555555555543   89999999995

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>TIGR01384 TFS_arch transcription factor S, archaeal

Probab=80.69  E-value=1.7  Score=34.40  Aligned_cols=39  Identities=23%  Similarity=0.738  Sum_probs=28.7

Q ss_pred             CCCCCCCCCCCcceeeecccCCCCCc---hhhhccccccccC
Q 022872           29 QLNCPRCNSTNTKFCYYNNYSLTQPR---YFCKTCRRYWTEG   67 (291)
Q Consensus        29 ~~~CPRC~S~~TKfcyyNNy~~~QPR---~fCk~CrRyWT~G   67 (291)
                      ...||+|...+.-|-..+-.+...|-   |.|..|+-.|+++
T Consensus        62 ~~~Cp~Cg~~~a~f~~~Q~RsadE~~T~fy~C~~C~~~w~~~  103 (104)
T TIGR01384        62 RVECPKCGHKEAYYWLLQTRRADEPETRFYKCTKCGYVWREY  103 (104)
T ss_pred             cCCCCCCCCCeeEEEEeccCCCCCCcEEEEEeCCCCCeeEeC
Confidence            48999998777666555544444333   8999999999875

There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
3k1f_M	197	Transcription initiation factor IIB; RNA polymeras	1e-04

>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 8/50 (16%)

Query: 15 SRPPMLERKARPQEQLN----CPRCNSTNTKFCYYNNYSLTQPRYFCKTC 60
          +R  + +R  R    LN    CP C     K      +S       C  C
Sbjct: 3  TRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVE--RFSEGD--VVCALC 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	80.69

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=80.69  E-value=0.84  Score=32.02  Aligned_cols=40  Identities=20%  Similarity=0.632  Sum_probs=26.4

Q ss_pred             cCCCCCCCCCCCcceeeecccCCCCC---chhhhccccccccC
Q 022872           28 EQLNCPRCNSTNTKFCYYNNYSLTQP---RYFCKTCRRYWTEG   67 (291)
Q Consensus        28 ~~~~CPRC~S~~TKfcyyNNy~~~QP---R~fCk~CrRyWT~G   67 (291)
                      -.++||+|...+..|--.+-.+...|   .|.|..|.--|+..
T Consensus        14 ~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~~   56 (57)
T 1qyp_A           14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRSY   56 (57)
T ss_dssp             EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEECC
T ss_pred             eEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEeccC
Confidence            34789999984444333333334444   38999999999863

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	91.58
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	87.95
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	84.12

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.58  E-value=0.073  Score=38.70  Aligned_cols=45  Identities=20%  Similarity=0.551  Sum_probs=32.9

Q ss_pred             CCccCCCCCCCCCCCcceeeecccCCCCCc---hhhhccccccccCCc
Q 022872           25 RPQEQLNCPRCNSTNTKFCYYNNYSLTQPR---YFCKTCRRYWTEGGS   69 (291)
Q Consensus        25 ~p~~~~~CPRC~S~~TKfcyyNNy~~~QPR---~fCk~CrRyWT~GG~   69 (291)
                      .|.-...||+|...+.-|-..+-.+..-|-   |.|..|.-.|+...+
T Consensus        19 lp~t~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~   66 (72)
T d1twfi2          19 LPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK   66 (72)
T ss_dssp             SCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred             CCccCCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence            344458899999887776666555444443   899999999998554

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.95  E-value=0.14  Score=35.02  Aligned_cols=38  Identities=21%  Similarity=0.670  Sum_probs=30.7

Q ss_pred             ccCCCCCCCCCCCcceeeecccCCCCCc---hhhhcccccc
Q 022872           27 QEQLNCPRCNSTNTKFCYYNNYSLTQPR---YFCKTCRRYW   64 (291)
Q Consensus        27 ~~~~~CPRC~S~~TKfcyyNNy~~~QPR---~fCk~CrRyW   64 (291)
                      ...+.||+|...+..|--.+..+...|-   +.|..|..-|
T Consensus         7 T~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             cCCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            3447999999998887777777777665   8999999988

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=84.12  E-value=0.26  Score=34.19  Aligned_cols=43  Identities=21%  Similarity=0.688  Sum_probs=31.2

Q ss_pred             CCCccCCCCCCCCCCCcceeeecccCCCCCc---hhhhcccccccc
Q 022872           24 ARPQEQLNCPRCNSTNTKFCYYNNYSLTQPR---YFCKTCRRYWTE   66 (291)
Q Consensus        24 ~~p~~~~~CPRC~S~~TKfcyyNNy~~~QPR---~fCk~CrRyWT~   66 (291)
                      ..|...+.||+|...+.-|--.+-.+..-|-   |.|..|.--|.+
T Consensus        10 ~~pt~~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wre   55 (57)
T d1qypa_          10 TLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             SSCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             cCCcccCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCccee
Confidence            3444458899999988877655555555444   899999999964