Citrus Sinensis ID: 022886

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRELQDEGFDVQTAGYGMPPLQFTSFHSVYKTLIQKTWLIIVLLW
cHHHHHcccccccEEEEEEEcccccccccccHHHHHHHccHHcccccccEEEEccccccEEEEEccEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHHHHEEEEEcc
cHHHHHcccccccEEEEEEEEcccccccccccHHHHHHcccccccccccEEEEEcccccccEccccEEEEEEEEEcccccccccHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccEEEccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccEEEEEEEEccccccEEEccccHHHHHHHHHHHHHccccccEEccccHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHc
MRKLGETKLKLKSTVIAVFIAseensaitgvGVDALVKDgllnklkggplywidtadkqpcigtggmipwklhvtgklfhsglphkainPLELAMEALKVIQTRfykdfpphpkeqvygfetpstmkptqwsypggginqipgectvsgdvrltpfynVTDVMKRLQEYVDDINENIekldtrgpvskyvlpdenirgsltltfdeatngvacnldsrgFHVLCKATEevvghvnpysitgtLPLIRELQDEgfdvqtagygmpplqftsFHSVYKTLIQKTWLIIVLLW
mrklgetklklKSTVIAVFIaseensaitgvGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEniekldtrgpvskyvlpdENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRELQDEGFDVQTAGYGMPPLQFTSFHSVYKTLIQKTWLIIVLLW
MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRELQDEGFDVQTAGYGMPPLQFTSFHSVYKTLIQKTWLIIVLLW
*********KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET***MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRELQDEGFDVQTAGYGMPPLQFTSFHSVYKTLIQKTWLIIVLLW
MRKL***KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRELQDEGFDVQTAGYGMPPLQFTSFHSVYKTLIQKTWLIIVLLW
MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRELQDEGFDVQTAGYGMPPLQFTSFHSVYKTLIQKTWLIIVLLW
MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRELQDEGFDVQTAGYGMPPLQFTSFHSVYKTLIQKTWLIIVLLW
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MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVxxxxxxxxxxxxxxxxxxxxxGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRELQDEGFDVQTAGYGMPPLQFTSFHSVYKTLIQKTWLIIVLLW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query290 2.2.26 [Sep-21-2011]
P54638447 Acetylornithine deacetyla yes no 0.896 0.581 0.505 9e-74
B2SQY5376 Succinyl-diaminopimelate yes no 0.510 0.393 0.25 2e-06
Q3BVJ3376 Succinyl-diaminopimelate yes no 0.5 0.385 0.254 3e-06
Q5H1C8376 Succinyl-diaminopimelate yes no 0.510 0.393 0.25 6e-06
Q2P492376 Succinyl-diaminopimelate yes no 0.510 0.393 0.25 6e-06
Q8PAU0376 Succinyl-diaminopimelate yes no 0.472 0.364 0.267 6e-06
Q4USS4376 Succinyl-diaminopimelate yes no 0.472 0.364 0.267 6e-06
B0RW53376 Succinyl-diaminopimelate yes no 0.472 0.364 0.267 6e-06
Q8PMJ5376 Succinyl-diaminopimelate yes no 0.489 0.377 0.253 7e-06
Q87F49377 Succinyl-diaminopimelate yes no 0.441 0.339 0.263 4e-05
>sp|P54638|ARGE_DICDI Acetylornithine deacetylase OS=Dictyostelium discoideum GN=argE PE=1 SV=2 Back     alignment and function desciption
 Score =  276 bits (707), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 134/265 (50%), Positives = 176/265 (66%), Gaps = 5/265 (1%)

Query: 3   KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCI 62
           +L   K  LK ++ AVFI SEEN  I G+GVDAL   G +N  K GP+YW+D+AD QP I
Sbjct: 149 QLATEKPALKHSIFAVFIVSEENDEIPGIGVDALDHSGKMNPCKNGPVYWVDSADSQPTI 208

Query: 63  GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET 122
           GTGG   W L   GK  HS +P++ +N +EL  EAL  IQ RFY DF PHPKE  Y F+ 
Sbjct: 209 GTGGAQTWNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRFYIDFKPHPKEAEYKFDC 268

Query: 123 PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDT 182
            STMKPT W    G  N IPGE T+ GD+RLTPFY++ ++  +++ Y+ DIN NI +L  
Sbjct: 269 SSTMKPTLWKPIAGSYNTIPGESTICGDIRLTPFYDMKEMRAKVEGYIKDINANITELRN 328

Query: 183 RGPVSKYVLPD----ENIRGSLTLTF-DEATNGVACNLDSRGFHVLCKATEEVVGHVNPY 237
           RGP SKY +P     E ++GS+++ +  EA+ GVAC LDS G+  L KAT E++G + P 
Sbjct: 329 RGPYSKYDVPASEGVEPVKGSVSIEWLGEASAGVACKLDSDGYKALGKATSEILGSLTPV 388

Query: 238 SITGTLPLIRELQDEGFDVQTAGYG 262
           +  GTLPL+R+LQD GFD+Q  G+G
Sbjct: 389 ATCGTLPLVRDLQDSGFDIQITGFG 413

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 6
>sp|B2SQY5|DAPE_XANOP Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=dapE PE=3 SV=1 Back     alignment and function description
>sp|Q3BVJ3|DAPE_XANC5 Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=dapE PE=3 SV=1 Back     alignment and function description
>sp|Q5H1C8|DAPE_XANOR Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) GN=dapE PE=3 SV=2 Back     alignment and function description
>sp|Q2P492|DAPE_XANOM Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=dapE PE=3 SV=1 Back     alignment and function description
>sp|Q8PAU0|DAPE_XANCP Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=dapE PE=3 SV=2 Back     alignment and function description
>sp|Q4USS4|DAPE_XANC8 Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dapE PE=3 SV=2 Back     alignment and function description
>sp|B0RW53|DAPE_XANCB Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris pv. campestris (strain B100) GN=dapE PE=3 SV=1 Back     alignment and function description
>sp|Q8PMJ5|DAPE_XANAC Succinyl-diaminopimelate desuccinylase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=dapE PE=3 SV=1 Back     alignment and function description
>sp|Q87F49|DAPE_XYLFT Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=dapE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
224138900 435 predicted protein [Populus trichocarpa] 0.906 0.604 0.874 1e-136
229463817330 N2-acetylornithine deacetylase [Populus 0.906 0.796 0.874 1e-135
224126285 435 predicted protein [Populus trichocarpa] 0.906 0.604 0.870 1e-135
229463815330 N2-acetylornithine deacetylase [Populus 0.906 0.796 0.870 1e-135
356541481 438 PREDICTED: acetylornithine deacetylase-l 0.906 0.600 0.859 1e-134
357482393 439 N-acetylornithine deacetylase-like prote 0.906 0.599 0.851 1e-133
255557587 435 acetylornithine deacetylase, putative [R 0.906 0.604 0.859 1e-133
297742105340 unnamed protein product [Vitis vinifera] 0.906 0.773 0.851 1e-133
225427220 433 PREDICTED: acetylornithine deacetylase [ 0.906 0.607 0.851 1e-132
147779898 433 hypothetical protein VITISV_016426 [Viti 0.906 0.607 0.851 1e-132
>gi|224138900|ref|XP_002326718.1| predicted protein [Populus trichocarpa] gi|222834040|gb|EEE72517.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/263 (87%), Positives = 250/263 (95%)

Query: 1   MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQP 60
           M+KLGETK KLKSTV+AVFIA+EENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQP
Sbjct: 141 MKKLGETKPKLKSTVVAVFIANEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQP 200

Query: 61  CIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGF 120
           CIGTGGMIPWKLHVTGKLFHSGLPHKAINPLEL MEALK IQ+RFY+DFPPH +EQVYGF
Sbjct: 201 CIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELGMEALKEIQSRFYRDFPPHKEEQVYGF 260

Query: 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKL 180
            TPSTMKPTQWSYPGGGINQIP ECT+SGDVRLTPFY+V DVM +LQ++VDDINENIEKL
Sbjct: 261 ATPSTMKPTQWSYPGGGINQIPAECTISGDVRLTPFYSVEDVMSKLQKHVDDINENIEKL 320

Query: 181 DTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSIT 240
            TRGPVSKYVLP+EN+RGSL +TFDEA++GVACNL SRGF VLCKATE++VGHV PYSIT
Sbjct: 321 GTRGPVSKYVLPEENLRGSLAVTFDEASSGVACNLKSRGFEVLCKATEKIVGHVKPYSIT 380

Query: 241 GTLPLIRELQDEGFDVQTAGYGM 263
           GTLPLIREL+DEGFDVQTAGYG+
Sbjct: 381 GTLPLIRELKDEGFDVQTAGYGL 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|229463817|gb|ACQ66334.1| N2-acetylornithine deacetylase [Populus maximowiczii x Populus nigra] Back     alignment and taxonomy information
>gi|224126285|ref|XP_002329517.1| predicted protein [Populus trichocarpa] gi|222870226|gb|EEF07357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|229463815|gb|ACQ66333.1| N2-acetylornithine deacetylase [Populus maximowiczii x Populus nigra] Back     alignment and taxonomy information
>gi|356541481|ref|XP_003539204.1| PREDICTED: acetylornithine deacetylase-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|357482393|ref|XP_003611482.1| N-acetylornithine deacetylase-like protein [Medicago truncatula] gi|355512817|gb|AES94440.1| N-acetylornithine deacetylase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|255557587|ref|XP_002519823.1| acetylornithine deacetylase, putative [Ricinus communis] gi|223540869|gb|EEF42427.1| acetylornithine deacetylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297742105|emb|CBI33892.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427220|ref|XP_002280473.1| PREDICTED: acetylornithine deacetylase [Vitis vinifera] Back     alignment and taxonomy information
>gi|147779898|emb|CAN74783.1| hypothetical protein VITISV_016426 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
DICTYBASE|DDB_G0267380447 argE "acetylornithine deacetyl 0.896 0.581 0.505 3.8e-69
DICTYBASE|DDB_G0267380 argE "acetylornithine deacetylase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 134/265 (50%), Positives = 176/265 (66%)

Query:     3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCI 62
             +L   K  LK ++ AVFI SEEN  I G+GVDAL   G +N  K GP+YW+D+AD QP I
Sbjct:   149 QLATEKPALKHSIFAVFIVSEENDEIPGIGVDALDHSGKMNPCKNGPVYWVDSADSQPTI 208

Query:    63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET 122
             GTGG   W L   GK  HS +P++ +N +EL  EAL  IQ RFY DF PHPKE  Y F+ 
Sbjct:   209 GTGGAQTWNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRFYIDFKPHPKEAEYKFDC 268

Query:   123 PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDT 182
              STMKPT W    G  N IPGE T+ GD+RLTPFY++ ++  +++ Y+ DIN NI +L  
Sbjct:   269 SSTMKPTLWKPIAGSYNTIPGESTICGDIRLTPFYDMKEMRAKVEGYIKDINANITELRN 328

Query:   183 RGPVSKYVLPD----ENIRGSLTLTF-DEATNGVACNLDSRGFHVLCKATEEVVGHVNPY 237
             RGP SKY +P     E ++GS+++ +  EA+ GVAC LDS G+  L KAT E++G + P 
Sbjct:   329 RGPYSKYDVPASEGVEPVKGSVSIEWLGEASAGVACKLDSDGYKALGKATSEILGSLTPV 388

Query:   238 SITGTLPLIRELQDEGFDVQTAGYG 262
             +  GTLPL+R+LQD GFD+Q  G+G
Sbjct:   389 ATCGTLPLVRDLQDSGFDIQITGFG 413


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.138   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      290       290   0.00089  115 3  11 22  0.40    34
                                                     33  0.43    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  220 KB (2122 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.06u 0.14s 24.20t   Elapsed:  00:00:02
  Total cpu time:  24.06u 0.14s 24.20t   Elapsed:  00:00:02
  Start:  Sat May 11 00:21:59 2013   End:  Sat May 11 00:22:01 2013
GO:0005615 "extracellular space" evidence=IDA
GO:0045335 "phagocytic vesicle" evidence=IDA
GO:0016787 "hydrolase activity" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0008777 "acetylornithine deacetylase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA
GO:0006526 "arginine biosynthetic process" evidence=IEA
GO:0044351 "macropinocytosis" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
cd08012423 cd08012, M20_ArgE-related, M20 Peptidases with sim 1e-174
cd08659365 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylo 1e-16
pfam07687107 pfam07687, M20_dimer, Peptidase dimerisation domai 2e-16
PRK08651394 PRK08651, PRK08651, succinyl-diaminopimelate desuc 2e-13
cd08011390 cd08011, M20_ArgE_DapE_like6, M20 Peptidases with 2e-12
TIGR01910375 TIGR01910, DapE-ArgE, acetylornithine deacetylase 1e-11
pfam01546310 pfam01546, Peptidase_M20, Peptidase family M20/M25 6e-10
COG0624409 COG0624, ArgE, Acetylornithine deacetylase/Succiny 3e-09
PRK13983400 PRK13983, PRK13983, diaminopimelate aminotransfera 2e-08
cd03894372 cd03894, M20_ArgE, M20 Peptidase acetylornithine d 8e-08
cd05650393 cd05650, M20_ArgE_DapE_like1, M20 Peptidases with 9e-08
cd05675426 cd05675, M20_yscS_like, M20 Peptidase, carboxypept 9e-08
PRK08588377 PRK08588, PRK08588, succinyl-diaminopimelate desuc 2e-07
cd05649376 cd05649, M20_ArgE_DapE_like4, M20 Peptidases with 5e-06
PRK07522385 PRK07522, PRK07522, acetylornithine deacetylase; P 3e-05
cd05651342 cd05651, M20_ArgE_DapE_like5, M20 Peptidases with 4e-05
TIGR01246370 TIGR01246, dapE_proteo, succinyl-diaminopimelate d 4e-05
cd03891366 cd03891, M20_DapE_proteobac, M20 Peptidase proteob 2e-04
TIGR01891363 TIGR01891, amidohydrolases, amidohydrolase 5e-04
cd03873237 cd03873, Zinc_peptidase_like, Zinc peptidases M18, 0.001
cd08018365 cd08018, M20_Acy1_amhX_like, M20 Peptidase Aminoac 0.001
PRK13009375 PRK13009, PRK13009, succinyl-diaminopimelate desuc 0.002
cd05652335 cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases 0.003
>gnl|CDD|193560 cd08012, M20_ArgE-related, M20 Peptidases with simlarity to acetylornithine deacetylases Back     alignment and domain information 
 Score =  487 bits (1255), Expect = e-174
 Identities = 194/263 (73%), Positives = 220/263 (83%), Gaps = 1/263 (0%)

Query: 1   MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQP 60
            R+L E K  LK TV+AVFIA+EENS I GVGVD LVK G L+ LK GP+YW+D+AD QP
Sbjct: 130 FRQLAERKPALKRTVVAVFIANEENSEIPGVGVDGLVKQGKLDPLKSGPVYWVDSADSQP 189

Query: 61  CIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGF 120
           CIGTGG+I WKL  TGKLFHSGLPHKAIN LELAMEAL  IQ RFY+DFPPHPKE+ YGF
Sbjct: 190 CIGTGGVITWKLKATGKLFHSGLPHKAINALELAMEALAEIQKRFYEDFPPHPKEERYGF 249

Query: 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKL 180
            T STMKPTQWSYPGGGINQIPGE T+SGD+RLTPFY+V +V K+L++YV DIN NIE+L
Sbjct: 250 ATSSTMKPTQWSYPGGGINQIPGEATISGDIRLTPFYDVAEVQKKLEKYVADINANIERL 309

Query: 181 DTRGPVSKYVLPDENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVVGHVNPYSI 239
            TRGPVSKYVLPDE  RG L+LTF E  T+G+ACNLDS GFH LCKAT EVVG+  PYSI
Sbjct: 310 PTRGPVSKYVLPDEGGRGRLSLTFGEEGTSGIACNLDSPGFHALCKATSEVVGYAKPYSI 369

Query: 240 TGTLPLIRELQDEGFDVQTAGYG 262
           TG+LPL+RELQD+GFDVQ  G+G
Sbjct: 370 TGSLPLVRELQDQGFDVQITGFG 392

Peptidase M20 family, acetylornithine deacetylase (ArgE, Acetylornithinase, AO, N2-acetyl-L-ornithine amidohydrolase, EC 3.5.1.16)-related subfamily. Proteins in this subfamily have not yet been characterized, but have been predicted to have deacetylase activity. ArgE catalyzes the conversion of N-acetylornithine to ornithine, which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad; several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 423
>gnl|CDD|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like Back     alignment and domain information
>gnl|CDD|219515 pfam07687, M20_dimer, Peptidase dimerisation domain Back     alignment and domain information
>gnl|CDD|236323 PRK08651, PRK08651, succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>gnl|CDD|193559 cd08011, M20_ArgE_DapE_like6, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases Back     alignment and domain information
>gnl|CDD|233632 TIGR01910, DapE-ArgE, acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>gnl|CDD|216562 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40 Back     alignment and domain information
>gnl|CDD|223697 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|237578 PRK13983, PRK13983, diaminopimelate aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|193514 cd03894, M20_ArgE, M20 Peptidase acetylornithine deacetylase Back     alignment and domain information
>gnl|CDD|193527 cd05650, M20_ArgE_DapE_like1, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases Back     alignment and domain information
>gnl|CDD|193550 cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like Back     alignment and domain information
>gnl|CDD|181490 PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>gnl|CDD|193526 cd05649, M20_ArgE_DapE_like4, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases Back     alignment and domain information
>gnl|CDD|236039 PRK07522, PRK07522, acetylornithine deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|193528 cd05651, M20_ArgE_DapE_like5, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases Back     alignment and domain information
>gnl|CDD|162269 TIGR01246, dapE_proteo, succinyl-diaminopimelate desuccinylase, proteobacterial clade Back     alignment and domain information
>gnl|CDD|193511 cd03891, M20_DapE_proteobac, M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase Back     alignment and domain information
>gnl|CDD|233621 TIGR01891, amidohydrolases, amidohydrolase Back     alignment and domain information
>gnl|CDD|193495 cd03873, Zinc_peptidase_like, Zinc peptidases M18, M20, M28, and M42 Back     alignment and domain information
>gnl|CDD|193565 cd08018, M20_Acy1_amhX_like, M20 Peptidase Aminoacylase 1 amhX_like subfamily Back     alignment and domain information
>gnl|CDD|237265 PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>gnl|CDD|193529 cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 290
PRK08588377 succinyl-diaminopimelate desuccinylase; Reviewed 100.0
PRK13013427 succinyl-diaminopimelate desuccinylase; Reviewed 100.0
PRK06915422 acetylornithine deacetylase; Validated 100.0
PRK13009375 succinyl-diaminopimelate desuccinylase; Reviewed 100.0
TIGR01910375 DapE-ArgE acetylornithine deacetylase or succinyl- 100.0
PRK08651394 succinyl-diaminopimelate desuccinylase; Reviewed 100.0
TIGR01246370 dapE_proteo succinyl-diaminopimelate desuccinylase 100.0
PRK08652347 acetylornithine deacetylase; Provisional 100.0
TIGR01892364 AcOrn-deacetyl acetylornithine deacetylase (ArgE). 100.0
PRK06837427 acetylornithine deacetylase; Provisional 100.0
PRK07522385 acetylornithine deacetylase; Provisional 100.0
PRK13983400 diaminopimelate aminotransferase; Provisional 100.0
TIGR03526395 selenium_YgeY putative selenium metabolism hydrola 100.0
TIGR03320395 ygeY M20/DapE family protein YgeY. Members of this 100.0
TIGR01900373 dapE-gram_pos succinyl-diaminopimelate desuccinyla 100.0
PRK00466346 acetyl-lysine deacetylase; Validated 100.0
PRK13004399 peptidase; Reviewed 99.98
PRK08737364 acetylornithine deacetylase; Provisional 99.98
PRK07338402 hypothetical protein; Provisional 99.97
TIGR01880400 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase 99.97
PRK05111383 acetylornithine deacetylase; Provisional 99.97
PRK08201456 hypothetical protein; Provisional 99.97
PRK04443348 acetyl-lysine deacetylase; Provisional 99.97
PRK08596421 acetylornithine deacetylase; Validated 99.97
PRK13007352 succinyl-diaminopimelate desuccinylase; Reviewed 99.97
PRK06133410 glutamate carboxypeptidase; Reviewed 99.97
PRK09104464 hypothetical protein; Validated 99.97
TIGR01883361 PepT-like peptidase T-like protein. This model rep 99.97
PRK07906426 hypothetical protein; Provisional 99.97
PRK07473376 carboxypeptidase; Provisional 99.97
PRK06446436 hypothetical protein; Provisional 99.97
TIGR01902336 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d 99.96
PRK09290413 allantoate amidohydrolase; Reviewed 99.96
PRK12892412 allantoate amidohydrolase; Reviewed 99.96
PLN02280478 IAA-amino acid hydrolase 99.96
PRK09133472 hypothetical protein; Provisional 99.96
PRK07907449 hypothetical protein; Provisional 99.96
PRK12893412 allantoate amidohydrolase; Reviewed 99.96
TIGR01879401 hydantase amidase, hydantoinase/carbamoylase famil 99.96
PRK12891414 allantoate amidohydrolase; Reviewed 99.96
PRK12890414 allantoate amidohydrolase; Reviewed 99.96
COG1473392 AbgB Metal-dependent amidase/aminoacylase/carboxyp 99.96
PRK13381404 peptidase T; Provisional 99.96
PRK07079469 hypothetical protein; Provisional 99.96
TIGR01891363 amidohydrolases amidohydrolase. This model represe 99.96
TIGR01886466 dipeptidase dipeptidase PepV. This model represent 99.95
PRK08262486 hypothetical protein; Provisional 99.95
COG0624409 ArgE Acetylornithine deacetylase/Succinyl-diaminop 99.95
PLN02693437 IAA-amino acid hydrolase 99.95
PRK05469408 peptidase T; Provisional 99.94
PRK15026485 aminoacyl-histidine dipeptidase; Provisional 99.94
TIGR01882410 peptidase-T peptidase T. This model represents a t 99.94
PRK07318466 dipeptidase PepV; Reviewed 99.94
TIGR03176406 AllC allantoate amidohydrolase. This enzyme cataly 99.93
KOG2275420 consensus Aminoacylase ACY1 and related metalloexo 99.93
TIGR01893477 aa-his-dipept aminoacyl-histidine dipeptidase. 99.92
PRK06156520 hypothetical protein; Provisional 99.92
PRK13590591 putative bifunctional OHCU decarboxylase/allantoat 99.92
PRK13799591 unknown domain/N-carbamoyl-L-amino acid hydrolase 99.91
PRK08554438 peptidase; Reviewed 99.91
PRK07205444 hypothetical protein; Provisional 99.91
TIGR01887447 dipeptidaselike dipeptidase, putative. This model 99.9
KOG2276473 consensus Metalloexopeptidases [Amino acid transpo 99.87
PF07687111 M20_dimer: Peptidase dimerisation domain This fami 99.75
COG2195414 PepD Di- and tripeptidases [Amino acid transport a 99.61
PF01546189 Peptidase_M20: Peptidase family M20/M25/M40 This f 98.78
COG4187 553 RocB Arginine degradation protein (predicted deacy 98.35
PF04389179 Peptidase_M28: Peptidase family M28; InterPro: IPR 92.13
PRK09961344 exoaminopeptidase; Provisional 91.3
TIGR03107350 glu_aminopep glutamyl aminopeptidase. This model r 87.94
PRK10199346 alkaline phosphatase isozyme conversion aminopepti 87.87
PRK09864356 putative peptidase; Provisional 87.51
PF05343292 Peptidase_M42: M42 glutamyl aminopeptidase; InterP 86.98
PRK09961344 exoaminopeptidase; Provisional 86.84
COG1363355 FrvX Cellulase M and related proteins [Carbohydrat 83.77
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=7e-34  Score=261.19  Aligned_cols=249  Identities=23%  Similarity=0.303  Sum_probs=203.0

Q ss_pred             hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCC
Q 022886            2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS   81 (290)
Q Consensus         2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs   81 (290)
                      ++|++.+..++++|.|+|++|||.|+   .|++++++++.+++  +|+++++||+...++.+++|..+++|+++|+++|+
T Consensus       113 ~~l~~~~~~~~~~i~l~~~~dEE~g~---~G~~~~~~~~~~~~--~d~~i~~ep~~~~i~~~~~G~~~~~i~~~G~~~Hs  187 (377)
T PRK08588        113 IELKEQGQLLNGTIRLLATAGEEVGE---LGAKQLTEKGYADD--LDALIIGEPSGHGIVYAHKGSMDYKVTSTGKAAHS  187 (377)
T ss_pred             HHHHHcCCCCCCcEEEEEEcccccCc---hhHHHHHhcCccCC--CCEEEEecCCCceeEEEEEEEEEEEEEEEeechhc
Confidence            46777887889999999999999987   89999999876543  57899999998888999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHH
Q 022886           82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD  161 (290)
Q Consensus        82 ~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~  161 (290)
                      +.|+.|.||+..+++++.++++... .+....     .+.+..+++++.|+ ||...|+||++|++++|+|+.|+++.++
T Consensus       188 s~p~~g~nAi~~~~~~l~~l~~~~~-~~~~~~-----~~~~~~t~~v~~i~-gG~~~nvip~~~~~~~d~R~~p~~~~~~  260 (377)
T PRK08588        188 SMPELGVNAIDPLLEFYNEQKEYFD-SIKKHN-----PYLGGLTHVVTIIN-GGEQVNSVPDEAELEFNIRTIPEYDNDQ  260 (377)
T ss_pred             cCCccccCHHHHHHHHHHHHHHHhh-hhcccC-----ccCCCCceeeeEEe-CCCcCCcCCCeEEEEEEeccCCCCCHHH
Confidence            9999999999999999999987532 222110     12235788999999 9999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-Cccccc
Q 022886          162 VMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSIT  240 (290)
Q Consensus       162 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~~  240 (290)
                      +.+.+++.+++....                   .+.++++++...+||+..++++++++.+++++++.+|.+ ....+.
T Consensus       261 v~~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~  321 (377)
T PRK08588        261 VISLLQEIINEVNQN-------------------GAAQLSLDIYSNHRPVASDKDSKLVQLAKDVAKSYVGQDIPLSAIP  321 (377)
T ss_pred             HHHHHHHHHHHHhhc-------------------cCCceEEEEecCCCCcCCCCCCHHHHHHHHHHHHhhCCCCceecCC
Confidence            999999988875431                   124567776677888888889999999999999988864 344567


Q ss_pred             cCcchHHHHhh--cCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHHH
Q 022886          241 GTLPLIRELQD--EGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKT  282 (290)
Q Consensus       241 gg~d~~~~~~~--~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~  282 (290)
                      |++|.+. |..  .|+|++.||||..  .|+         +.+.+++|.+++.+.
T Consensus       322 g~tD~~~-~~~~~~~ip~i~~Gpg~~~~~H~~~E~i~~~~l~~~~~~~~~~~~~~  375 (377)
T PRK08588        322 GATDASS-FLKKKPDFPVIIFGPGNNLTAHQVDEYVEKDMYLKFIDIYKEIIIQY  375 (377)
T ss_pred             CcccHHH-HhhhcCCCCEEEECCCCCccCCCCCceeEHHHHHHHHHHHHHHHHHH
Confidence            8888544 543  5899999999942  343         667788888887653

>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK06915 acetylornithine deacetylase; Validated Back     alignment and domain information
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade Back     alignment and domain information
>PRK08652 acetylornithine deacetylase; Provisional Back     alignment and domain information
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE) Back     alignment and domain information
>PRK06837 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK07522 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK13983 diaminopimelate aminotransferase; Provisional Back     alignment and domain information
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase Back     alignment and domain information
>TIGR03320 ygeY M20/DapE family protein YgeY Back     alignment and domain information
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>PRK00466 acetyl-lysine deacetylase; Validated Back     alignment and domain information
>PRK13004 peptidase; Reviewed Back     alignment and domain information
>PRK08737 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK07338 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase Back     alignment and domain information
>PRK05111 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK08201 hypothetical protein; Provisional Back     alignment and domain information
>PRK04443 acetyl-lysine deacetylase; Provisional Back     alignment and domain information
>PRK08596 acetylornithine deacetylase; Validated Back     alignment and domain information
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK06133 glutamate carboxypeptidase; Reviewed Back     alignment and domain information
>PRK09104 hypothetical protein; Validated Back     alignment and domain information
>TIGR01883 PepT-like peptidase T-like protein Back     alignment and domain information
>PRK07906 hypothetical protein; Provisional Back     alignment and domain information
>PRK07473 carboxypeptidase; Provisional Back     alignment and domain information
>PRK06446 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase Back     alignment and domain information
>PRK09290 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK12892 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PLN02280 IAA-amino acid hydrolase Back     alignment and domain information
>PRK09133 hypothetical protein; Provisional Back     alignment and domain information
>PRK07907 hypothetical protein; Provisional Back     alignment and domain information
>PRK12893 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family Back     alignment and domain information
>PRK12891 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK12890 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only] Back     alignment and domain information
>PRK13381 peptidase T; Provisional Back     alignment and domain information
>PRK07079 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01891 amidohydrolases amidohydrolase Back     alignment and domain information
>TIGR01886 dipeptidase dipeptidase PepV Back     alignment and domain information
>PRK08262 hypothetical protein; Provisional Back     alignment and domain information
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02693 IAA-amino acid hydrolase Back     alignment and domain information
>PRK05469 peptidase T; Provisional Back     alignment and domain information
>PRK15026 aminoacyl-histidine dipeptidase; Provisional Back     alignment and domain information
>TIGR01882 peptidase-T peptidase T Back     alignment and domain information
>PRK07318 dipeptidase PepV; Reviewed Back     alignment and domain information
>TIGR03176 AllC allantoate amidohydrolase Back     alignment and domain information
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase Back     alignment and domain information
>PRK06156 hypothetical protein; Provisional Back     alignment and domain information
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional Back     alignment and domain information
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional Back     alignment and domain information
>PRK08554 peptidase; Reviewed Back     alignment and domain information
>PRK07205 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01887 dipeptidaselike dipeptidase, putative Back     alignment and domain information
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 [] Back     alignment and domain information
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism] Back     alignment and domain information
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK09961 exoaminopeptidase; Provisional Back     alignment and domain information
>TIGR03107 glu_aminopep glutamyl aminopeptidase Back     alignment and domain information
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional Back     alignment and domain information
>PRK09864 putative peptidase; Provisional Back     alignment and domain information
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK09961 exoaminopeptidase; Provisional Back     alignment and domain information
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
3pfo_A433 Putative acetylornithine deacetylase; metal bindin 2e-17
2rb7_A364 Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat 1e-15
3tx8_A369 Succinyl-diaminopimelate desuccinylase; peptidase, 1e-14
3ct9_A356 Acetylornithine deacetylase; NP_812461.1, A putati 3e-12
2f7v_A369 Aectylcitrulline deacetylase; alpha/beta, hydrolas 3e-10
1cg2_A393 Carboxypeptidase G2; metallocarboxypeptidase, hydr 2e-09
2zog_A479 Cytosolic non-specific dipeptidase; metallopeptida 7e-06
3dlj_A485 Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti 9e-06
1lfw_A470 PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac 1e-05
3isz_A377 Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b 3e-05
1vgy_A393 Succinyl-diaminopimelate desuccinylase; structural 1e-04
3rza_A396 Tripeptidase; phosphorylase/hydrolase-like, struct 2e-04
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Length = 433 Back     alignment and structure
 Score = 80.5 bits (199), Expect = 2e-17
 Identities = 31/252 (12%), Positives = 60/252 (23%), Gaps = 43/252 (17%)

Query: 1   MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWID------ 54
           +  +        + V    +  EE    TG G  + +  G          Y  D      
Sbjct: 156 LDAIRTAGYAPDARVHVQTVTEEE---STGNGALSTLMRG----------YRADACLIPE 202

Query: 55  -TADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAM---EALKVIQTRFYKDFP 110
            T          G + ++L V G   H        + +  AM    A +           
Sbjct: 203 PTGH-TLTRAQVGAVWFRLRVRGTPVHVAYSETGTSAILSAMHLIRAFEEYTKELNAQAV 261

Query: 111 PHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169
             P       + P           GG   +     C +   + L       + M+ +++ 
Sbjct: 262 RDP--WFGQVKNPIKFNVGIIK--GGDWASSTAAWCELDCRLGLLTGDTPQEAMRGIEKC 317

Query: 170 VDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEE 229
           + D        D+    +   L     +    +                   VL  A + 
Sbjct: 318 LADAQAT----DSFLSENPAELVWSGFQADPAVCEP----------GGVAEDVLTAAHKA 363

Query: 230 VVGHVNPYSITG 241
                    ++ 
Sbjct: 364 AFNAPLDARLST 375
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Length = 364 Back     alignment and structure
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Length = 369 Back     alignment and structure
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Length = 356 Back     alignment and structure
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Length = 369 Back     alignment and structure
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Length = 393 Back     alignment and structure
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Length = 479 Back     alignment and structure
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Length = 485 Back     alignment and structure
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Length = 470 Back     alignment and structure
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Length = 377 Back     alignment and structure
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Length = 393 Back     alignment and structure
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Length = 396 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query290
3pfo_A433 Putative acetylornithine deacetylase; metal bindin 100.0
3isz_A377 Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b 100.0
1vgy_A393 Succinyl-diaminopimelate desuccinylase; structural 100.0
2f7v_A369 Aectylcitrulline deacetylase; alpha/beta, hydrolas 99.98
3tx8_A369 Succinyl-diaminopimelate desuccinylase; peptidase, 99.97
3rza_A396 Tripeptidase; phosphorylase/hydrolase-like, struct 99.97
1xmb_A418 IAA-amino acid hydrolase homolog 2; structural gen 99.97
3gb0_A373 Peptidase T; NP_980509.1, aminopeptidase PEPT, pep 99.97
3ct9_A356 Acetylornithine deacetylase; NP_812461.1, A putati 99.97
1cg2_A393 Carboxypeptidase G2; metallocarboxypeptidase, hydr 99.97
1ysj_A404 Protein YXEP; M20 family peptidase, dinuclear meta 99.96
3io1_A445 Aminobenzoyl-glutamate utilization protein; peptid 99.96
2rb7_A364 Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat 99.96
3pfe_A472 Succinyl-diaminopimelate desuccinylase; metal bind 99.96
2pok_A481 Peptidase, M20/M25/M40 family; M20 family peptidas 99.96
3ife_A434 Peptidase T; metallopeptidase, aminopeptidase, hyd 99.96
3dlj_A485 Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti 99.96
3ram_A394 HMRA protein; two-domain, catalytic (alpha-beta-al 99.95
2zog_A479 Cytosolic non-specific dipeptidase; metallopeptida 99.95
1z2l_A423 Allantoate amidohydrolase; ALLC, purine cataboli a 99.94
2v8h_A474 Beta-alanine synthase; amidohydrolase, alpha and b 99.94
3n5f_A408 L-carbamoylase, N-carbamoyl-L-amino acid hydrolase 99.94
1fno_A417 Peptidase T; metallo peptidase, protease, hydrolas 99.94
2qyv_A487 XAA-His dipeptidase; YP_718209.1, structural genom 99.94
3mru_A490 Aminoacyl-histidine dipeptidase; metalloprotease, 99.94
3khx_A492 Putative dipeptidase sacol1801; DAPE, metallopepti 99.94
1lfw_A470 PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac 99.9
3t68_A268 Succinyl-diaminopimelate desuccinylase; DAPE, csgi 98.9
4h2k_A269 Succinyl-diaminopimelate desuccinylase; DAPE, MCSG 98.71
1q7l_B88 Aminoacylase-1; catalysis, enzyme dimerization, si 98.67
1q7l_A198 Aminoacylase-1; catalysis, enzyme dimerization, si 98.28
2wyr_A332 Cobalt-activated peptidase TET1; hydrolase, large 97.84
2wzn_A354 TET3, 354AA long hypothetical operon protein FRV; 97.74
2fvg_A340 Endoglucanase; TM1049, structural genomics, joint 97.46
1y0y_A353 FRV operon protein FRVX; aminopeptidase, PDZ, hydr 97.41
1rtq_A299 Bacterial leucyl aminopeptidase; bimetallic, zinc, 95.15
2gre_A349 Deblocking aminopeptidase; structural genomi prote 94.76
1vhe_A373 Aminopeptidase/glucanase homolog; structural genom 93.94
1tkj_A284 Aminopeptidase, SGAP; double-zinc metalloproteinas 93.86
1vhe_A373 Aminopeptidase/glucanase homolog; structural genom 93.22
1ylo_A348 Hypothetical protein SF2450; structural genomics, 93.22
1vho_A346 Endoglucanase; structural genomics, unknown functi 91.32
3cpx_A321 Aminopeptidase, M42 family; YP_676701.1, putative 91.13
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 90.13
3tc8_A309 Leucine aminopeptidase; phosphorylase/hydrolase-li 88.03
3gux_A314 Putative Zn-dependent exopeptidase; aminopeptidase 86.94
2fvg_A340 Endoglucanase; TM1049, structural genomics, joint 86.33
1ylo_A348 Hypothetical protein SF2450; structural genomics, 81.59
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Back     alignment and structure
Probab=100.00  E-value=3.1e-32  Score=253.11  Aligned_cols=253  Identities=12%  Similarity=0.103  Sum_probs=200.7

Q ss_pred             hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCC
Q 022886            2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS   81 (290)
Q Consensus         2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs   81 (290)
                      ++|++.+..++++|.|+|+++||.++   .|++.+++.+    +++|++|+.||+...++.+++|..+++|+++|+++|+
T Consensus       157 ~~l~~~~~~~~~~v~~~~~~~EE~g~---~G~~~~~~~~----~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~Ha  229 (433)
T 3pfo_A          157 DAIRTAGYAPDARVHVQTVTEEESTG---NGALSTLMRG----YRADACLIPEPTGHTLTRAQVGAVWFRLRVRGTPVHV  229 (433)
T ss_dssp             HHHHHTTEEESSCEEEEEESCTTTTC---HHHHHHHHTT----CCCSEEEECCCCSSCEEEEECEEEEEEEEEECCCCBG
T ss_pred             HHHHHcCCCCCccEEEEEEecCccCC---hhHHHHHhcC----CCCCEEEEeCCCCCceEEecceEEEEEEEEEcCCCcc
Confidence            56777777789999999999999987   8999998865    3579999999998889999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhhhcCC-----CCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCC
Q 022886           82 GLPHKAINPLELAMEALKVIQTRFYKD-----FPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPF  156 (290)
Q Consensus        82 ~~p~~g~NAi~~~~~~i~~l~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~  156 (290)
                      +.|+.|.||+..+++++.+|+....+.     .++.    ...+..+.+++++.|+ +|...|+||++|++.+++|++|+
T Consensus       230 ~~p~~g~nAi~~~~~~i~~l~~l~~~~~~~~~~~~~----~~~~~~~~~~~vg~i~-gG~~~NvIP~~a~~~~~iR~~~~  304 (433)
T 3pfo_A          230 AYSETGTSAILSAMHLIRAFEEYTKELNAQAVRDPW----FGQVKNPIKFNVGIIK-GGDWASSTAAWCELDCRLGLLTG  304 (433)
T ss_dssp             GGGGGSCCHHHHHHHHHHHHHHHHHHHHHHGGGCTT----TTTSSSCSCEEEEEEE-ECSCTTBCCCEEEEEEEEEECTT
T ss_pred             CCCCcCcCHHHHHHHHHHHHHHHHHHhhhccccCcc----ccccCCCceEEeeeEE-CCCCCcccCcEEEEEEEEecCCC
Confidence            999999999999999999988753210     0110    0012235688999999 99999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEe-cCCCccccCCCCHHHHHHHHHHHHHhCCC-
Q 022886          157 YNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFD-EATNGVACNLDSRGFHVLCKATEEVVGHV-  234 (290)
Q Consensus       157 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-  234 (290)
                      ++.+++.+++++.+++..+....+               .+..+++++. ..+|++.++.|+++++.+.+++++.+|.+ 
T Consensus       305 ~~~~~~~~~i~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~p~~~~~~d~~~~~~~~~a~~~~~G~~~  369 (433)
T 3pfo_A          305 DTPQEAMRGIEKCLADAQATDSFL---------------SENPAELVWSGFQADPAVCEPGGVAEDVLTAAHKAAFNAPL  369 (433)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHH---------------HHSCCEEEEEEEEECCEECCTTCHHHHHHHHHHHHHHSSCC
T ss_pred             CCHHHHHHHHHHHHHHHhhhCccc---------------ccCCeEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999998865432100               0123455654 45788888889999999999999988864 


Q ss_pred             CccccccCcchHHHHhh-cCCcEEEEcCCCC-ccc---------cchHHHHHHHHHHHH
Q 022886          235 NPYSITGTLPLIRELQD-EGFDVQTAGYGMP-PLQ---------FTSFHSVYKTLIQKT  282 (290)
Q Consensus       235 ~~~~~~gg~d~~~~~~~-~g~~~v~~Gpg~~-~~~---------~~~~~~iy~~~~~~~  282 (290)
                      ....+.|++| +++|.+ .|+|++.||||.. .|+         +...+++|..++.+.
T Consensus       370 ~~~~~~g~~D-~~~~~~~~giP~v~~Gp~~~~~H~~~E~i~~~~l~~~~~~~~~~i~~~  427 (433)
T 3pfo_A          370 DARLSTAVND-TRYYSVDYGIPALCYGPYGQGPHAFDERIDLESLRKTTLSIALFVAEW  427 (433)
T ss_dssp             CEEEESSCCT-HHHHHHTTCCCEEECCCCEECTTSTTCEEEHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeeeeecc-HHHHHhhCCCCEEEECCCCccCCCCCceEEHHHHHHHHHHHHHHHHHH
Confidence            4456778888 555766 6999999999742 333         556677777776654
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Back     alignment and structure
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Back     alignment and structure
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Back     alignment and structure
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Back     alignment and structure
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A Back     alignment and structure
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Back     alignment and structure
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Back     alignment and structure
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} Back     alignment and structure
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Back     alignment and structure
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} Back     alignment and structure
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Back     alignment and structure
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A Back     alignment and structure
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A Back     alignment and structure
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} Back     alignment and structure
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A Back     alignment and structure
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} Back     alignment and structure
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} Back     alignment and structure
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Back     alignment and structure
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A Back     alignment and structure
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae} Back     alignment and structure
>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Back     alignment and structure
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Back     alignment and structure
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A Back     alignment and structure
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A Back     alignment and structure
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A Back     alignment and structure
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Back     alignment and structure
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Back     alignment and structure
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Back     alignment and structure
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 290
d1lfwa2196 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactoba 5e-11
d1vgya2113 d.58.19.1 (A:181-293) Succinyl-diaminopimelate des 2e-10
d1cg2a2113 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudom 3e-08
d1ysja2115 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subti 2e-06
d1xmba2119 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mo 1e-05
d1z2la2117 d.58.19.1 (A:213-329) Allantoate amidohydrolase Al 4e-05
>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Length = 196 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Aminopeptidase PepV
species: Lactobacillus delbrueckii [TaxId: 1584]

 Score = 58.3 bits (140), Expect = 5e-11
 Identities = 18/183 (9%), Positives = 42/183 (22%), Gaps = 21/183 (11%)

Query: 14  TVIAVFIASEENSAITGVGVDA-----LVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMI 68
           T+   F   +           A     +        + G  L  +  A +          
Sbjct: 5   TLEFSFKNDDTKGDYVLDKFKAGIATNVTPQVTRATISGPDLEAVKLAYESFLADKELDG 64

Query: 69  P-------WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
                     + + G+  H+  P    N        L             H   +V   +
Sbjct: 65  SFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHED 124

Query: 122 TPSTMKPTQWSYP--------GGGI-NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172
                                      +  G+ ++  +VR     +   ++K++ +    
Sbjct: 125 FYGKKLGIFHHDDLMGDLASSPSMFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFSG 184

Query: 173 INE 175
           I +
Sbjct: 185 ILD 187
>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]} Length = 113 Back     information, alignment and structure
>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]} Length = 113 Back     information, alignment and structure
>d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Length = 115 Back     information, alignment and structure
>d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119 Back     information, alignment and structure
>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]} Length = 117 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query290
d1ysja2115 Protein YxeP {Bacillus subtilis [TaxId: 1423]} 99.82
d1vgya2113 Succinyl-diaminopimelate desuccinylase {Neisseria 99.79
d1xmba2119 IAA-amino acid hydrolase {Mouse-ear cress (Arabido 99.78
d1cg2a2113 Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 99.76
d1z2la2117 Allantoate amidohydrolase AllC {Escherichia coli [ 99.66
d1lfwa2196 Aminopeptidase PepV {Lactobacillus delbrueckii [Ta 99.62
d1r3na2116 Peptidase-like beta-alanine synthase {Yeast (Sacch 99.59
d1vgya1262 Succinyl-diaminopimelate desuccinylase, catalytic 98.92
g1q7l.1280 Aminoacylase-1, catalytic domain {Human (Homo sapi 98.14
d1fnoa3113 Peptidase T (tripeptidase) {Salmonella typhimurium 97.98
d1ysja1261 Protein YxeP {Bacillus subtilis [TaxId: 1423]} 97.57
d1xmba1273 IAA-amino acid hydrolase, catalytic domain {Mouse- 97.51
d1cg2a1276 Carboxypeptidase G2, catalytic domain {Pseudomonas 97.37
d1lfwa1272 Aminopeptidase PepV {Lactobacillus delbrueckii [Ta 96.53
d1fnoa4295 Peptidase T (tripeptidase), catalytic domain {Salm 96.38
d1rtqa_291 Aminopeptidase {Aeromonas proteolytica [TaxId: 671 93.42
d2grea2233 Deblocking aminopeptidase YhfE {Bacillus cereus [T 92.71
d1tkja1277 Aminopeptidase {Streptomyces griseus [TaxId: 1911] 91.71
d1y0ya2255 Frv operon protein FrvX, catalytic domain {Pyrococ 84.95
d3bi1a3304 Glutamate carboxypeptidase II FOLH1 {Human (Homo s 83.27
>d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Protein YxeP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=1.6e-20  Score=140.85  Aligned_cols=114  Identities=16%  Similarity=0.244  Sum_probs=77.1

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceE
Q 022886           67 MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECT  146 (290)
Q Consensus        67 ~~~~~v~v~G~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~  146 (290)
                      ...|+|+++|+++|++.|+.|.||+..+++++++|+++..+..++.         .+.+++++.++ +|.+.|+||++|+
T Consensus         2 ~d~f~v~v~Gk~aHaa~P~~g~nai~~a~~~i~~l~~~~~~~~~~~---------~~~~~~~~~i~-~G~~~NvIP~~~~   71 (115)
T d1ysja2           2 VDRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSL---------QNAVVSITRVQ-AGTSWNVIPDQAE   71 (115)
T ss_dssp             EEEEEEEEECC--------CCCCHHHHHHHHHHHHC--------------------CCEEEEEEEE-ECSCSSSCCSEEE
T ss_pred             ceEEEEEEEEecccccCcccCcCHHHHHHHHHHHhcccchhccccc---------ccccceeeEEe-cCccccccCcceE
Confidence            4579999999999999999999999999999999987654443332         25778999999 8899999999999


Q ss_pred             EEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCC
Q 022886          147 VSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATN  209 (290)
Q Consensus       147 ~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  209 (290)
                      +.+|+|..+.++.+++.+.|++.++.++                   ..+++++++++...||
T Consensus        72 ~~~~iR~~~~~~~~~i~~~i~~~~~~~a-------------------~~~g~~~ei~~~~~~P  115 (115)
T d1ysja2          72 MEGTVRTFQKEARQAVPEHMRRVAEGIA-------------------AGYGAQAEFKWFPYLP  115 (115)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHHHHHHHH-------------------HHTTCEEEEEEEEEEC
T ss_pred             EEEEeccCCHHHHHHHHHHHHHHHHHHH-------------------HHhCCEEEEEEEcCCC
Confidence            9999999975555555555555554443                   2347888888877665
>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]} Back     information, alignment and structure
>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Back     information, alignment and structure
>d1r3na2 d.58.19.1 (A:248-363) Peptidase-like beta-alanine synthase {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Back     information, alignment and structure
>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Back     information, alignment and structure
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Back     information, alignment and structure
>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Back     information, alignment and structure
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure