Citrus Sinensis ID: 022890

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQVEG
Secondary Structure (PSIPRED)
cccccccEEEEEccccEEEEEEccccccccccccEEEccccccccccEEEEEEEEcccccccccccccEEEEcEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHEEEEcccccEEEEEEcccccccccccccEEEccccHHcccEEEEEEEEEEccccEEEcccEEEEEEEEEEEEEEcccHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mgnsfcmlcgcidqaSVGIVERWGRFeklaepglhffnpcaGQWLAGILSTRINSLDVrietktkdNVFVQLLCSIQYRIVRANADdafyelqnpkeqIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMvdiipdpaVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKdlgnssnnttvflphgpghvrdiSDQIRNGLMEASAAQVEG
Flexible Loop (DISEMBL)
MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIetktkdnvfVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAkylggvgvarQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQVEG
Low Complexity Region (SEG)
MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQVEG
Disordered region (IsUnstruct)
****FCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPH**************************
Disordered Region (DISOPRED)
*GNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLG**GV**QRQAITDGLRENILN***********EVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISD****************
Disordered Region (DISEMBL)
MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLME********
Disordered Region (DISPRO)
*GNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEAS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQVEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q9FHM7	292	Hypersensitive-induced re	yes	no	0.986	0.979	0.902	1e-155
Q9FM19	286	Hypersensitive-induced re	no	no	0.986	1.0	0.590	1e-99
Q9SRH6	285	Hypersensitive-induced re	no	no	0.979	0.996	0.566	8e-97
Q9CAR7	286	Hypersensitive-induced re	no	no	0.955	0.968	0.584	4e-90
P16148	184	Protein PPLZ12 OS=Lupinus	N/A	no	0.603	0.951	0.885	2e-87
P72655	321	Uncharacterized protein s	N/A	no	0.882	0.797	0.228	2e-14
P0DKS0	313	Protein QmcA OS=Wiggleswo	yes	no	0.813	0.753	0.236	8e-13
P0AA56	305	Protein QmcA OS=Shigella	yes	no	0.793	0.754	0.244	1e-11
P0AA53	305	Protein QmcA OS=Escherich	N/A	no	0.793	0.754	0.244	1e-11
P0AA54	305	Protein QmcA OS=Escherich	yes	no	0.793	0.754	0.244	1e-11

>sp|Q9FHM7|HIR4_ARATH Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana GN=HIR4 PE=1 SV=1

 Score =  547 bits (1409), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 258/286 (90%), Positives = 276/286 (96%)

Query: 1   MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
           MGN++C+L GCI+QASVG+VERWGRFE +AEPG HFFNP AGQWLAG+LSTRI SLDV+I
Sbjct: 1   MGNTYCILGGCIEQASVGVVERWGRFEHIAEPGCHFFNPLAGQWLAGVLSTRIKSLDVKI 60

Query: 61  ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           ETKTKDNVFVQL+CSIQYR+V+A+ADDAFYELQNPKEQIQAYVFDVVRALVP MTLD LF
Sbjct: 61  ETKTKDNVFVQLVCSIQYRVVKASADDAFYELQNPKEQIQAYVFDVVRALVPMMTLDALF 120

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
           EQKGEVAK+VLEELEKVMGAYGYSIEHILMVDIIPDP+VRKAMNEINAAQRLQLASVYKG
Sbjct: 121 EQKGEVAKSVLEELEKVMGAYGYSIEHILMVDIIPDPSVRKAMNEINAAQRLQLASVYKG 180

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
           EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFS KVEG SAKEVMDLIM
Sbjct: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSDKVEGTSAKEVMDLIM 240

Query: 241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAA 286
           ITQYFDTI+DLGNSS NTTVFLPHGPGHVRDISDQIRNG+MEA+A+
Sbjct: 241 ITQYFDTIRDLGNSSKNTTVFLPHGPGHVRDISDQIRNGMMEAAAS 286

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1

 Score =  363 bits (931), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 170/288 (59%), Positives = 225/288 (78%), Gaps = 2/288 (0%)

Query: 1   MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
           MGN FC  C  +DQ++V I E +G+FE + EPG HF   C G  +AG LS R+  LDVR 
Sbjct: 1   MGNLFC--CVQVDQSTVAIKETFGKFEDVLEPGCHFLPWCLGSQVAGYLSLRVQQLDVRC 58

Query: 61  ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           ETKTKDNVFV ++ SIQYR +   A+DA+Y+L N + QIQAYVFDV+RA VP++ LD++F
Sbjct: 59  ETKTKDNVFVNVVASIQYRALANKANDAYYKLSNTRGQIQAYVFDVIRASVPKLLLDDVF 118

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
           EQK ++AKAV EELEK M AYGY I   L+VDI PD  V++AMNEINAA R++LA+  K 
Sbjct: 119 EQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAANEKA 178

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
           EAEKILQ+KRAE EAE+KYL G+G+ARQRQAI DGLR+++L F+  V G +AK+VMD+++
Sbjct: 179 EAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVL 238

Query: 241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQV 288
           +TQYFDT+K++G SS ++ VF+PHGPG VRD++ QIR+GL++ S+A +
Sbjct: 239 VTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQGSSANL 286

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRH6|HIR3_ARATH Hypersensitive-induced response protein 3 OS=Arabidopsis thaliana GN=HIR3 PE=1 SV=1

 Score =  353 bits (906), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 162/286 (56%), Positives = 221/286 (77%), Gaps = 2/286 (0%)

Query: 1   MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
           MGN FC  C  + Q+ V + ER+G+F+K+  PGL F     G ++AG L+ R+  LDV+ 
Sbjct: 1   MGNLFC--CVLVKQSDVAVKERFGKFQKVLNPGLQFVPWVIGDYVAGTLTLRLQQLDVQC 58

Query: 61  ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           ETKTKDNVFV ++ SIQYR++   A DAFY L NP  QI+AYVFDV+RA VP++ LD++F
Sbjct: 59  ETKTKDNVFVTVVASIQYRVLADKASDAFYRLSNPTTQIKAYVFDVIRACVPKLNLDDVF 118

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
           EQK E+AK+V EEL+K M AYGY I   L++DI PD  V++AMNEINAA R+++A+  K 
Sbjct: 119 EQKNEIAKSVEEELDKAMTAYGYEILQTLIIDIEPDQQVKRAMNEINAAARMRVAASEKA 178

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
           EAEKI+Q+KRAE EAE+KYL G+G+ARQRQAI DGLR+++L F+  V G SAK+V+D++M
Sbjct: 179 EAEKIIQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAGNVPGTSAKDVLDMVM 238

Query: 241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAA 286
           +TQYFDT++D+G +S ++ VF+PHGPG V D++ QIRNGL++A+ A
Sbjct: 239 MTQYFDTMRDIGATSKSSAVFIPHGPGAVSDVAAQIRNGLLQANNA 284

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR7|HIR2_ARATH Hypersensitive-induced response protein 2 OS=Arabidopsis thaliana GN=HIR2 PE=1 SV=1

 Score =  331 bits (848), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 163/279 (58%), Positives = 213/279 (76%), Gaps = 2/279 (0%)

Query: 10  GCI--DQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDN 67
           GCI  DQ++V I E +G+F+++ EPG H    C G  +AG LS R+  LDVR ETKTKDN
Sbjct: 6   GCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCETKTKDN 65

Query: 68  VFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVA 127
           VFV ++ SIQYR +  +A DAFY+L N + QIQAYVFDV+RA VP++ LD  FEQK ++A
Sbjct: 66  VFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQKNDIA 125

Query: 128 KAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQ 187
           K V  ELEK M  YGY I   L+VDI PD  V++AMNEINAA R++ A+  K EAEKILQ
Sbjct: 126 KTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAASRMREAASEKAEAEKILQ 185

Query: 188 VKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDT 247
           +KRAE EAE+KYL G+G+ARQRQAI DGLR ++L FS  V G S+K+VMD++++TQYFDT
Sbjct: 186 IKRAEGEAESKYLSGMGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVTQYFDT 245

Query: 248 IKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAA 286
           +K++G SS + +VF+PHGPG VRDI+ QIR+GL++ ++A
Sbjct: 246 LKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQGNSA 284

Arabidopsis thaliana (taxid: 3702)

>sp|P16148|PLZ12_LUPPO Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1

 Score =  322 bits (825), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 155/175 (88%), Positives = 167/175 (95%)

Query: 114 MTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQ 173
           M LD+LFEQKGEVAK+VLEELEKVMG YGY+IEHILMVDIIPD +VR+AMNEINAAQR+Q
Sbjct: 1   MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQ 60

Query: 174 LASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAK 233
           LAS+YKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEG SAK
Sbjct: 61  LASLYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTSAK 120

Query: 234 EVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQV 288
           EVMDLIMITQYFDTIKDLGNSS NTTVF+PHGPGHVRDI +QIRNGLME++ A +
Sbjct: 121 EVMDLIMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGEQIRNGLMESARAGI 175

Lupinus polyphyllus (taxid: 3874)

>sp|P72655|Y1128_SYNY3 Uncharacterized protein slr1128 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1128 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 134/276 (48%), Gaps = 20/276 (7%)

Query: 2   GNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIE 61
           G++       +++ +  +VER G + K   PGL+F  P   + +    +TR   +D+  +
Sbjct: 13  GSAIGTSVKIVNEKNEYLVERLGSYNKKLTPGLNFTVPILDRVVFK-QTTREKVIDIPPQ 71

Query: 62  T-KTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           +  TKDNV +     + +RI+  + + A+Y+++N +  +   V   +R+ + ++ LD+ F
Sbjct: 72  SCITKDNVAITADAVVYWRII--DMEKAYYKVENLQSAMVNLVLTQIRSEIGKLELDQTF 129

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
             + E+ + +L EL+     +G  +  + + DI+P  AV  +M     A+R + A++   
Sbjct: 130 TARTEINELLLRELDISTDPWGVKVTRVELRDIMPSKAVLDSMELQMTAERKKRAAILTS 189

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRE---NILNFSHKVEGAS------ 231
           E ++   +  A+ +A+A+ L     A+++ AI +   E    +L      E  S      
Sbjct: 190 EGQRDSAINSAQGDAQARVLE--AEAKKKAAILNAEAEQQKKVLEAKATAEALSILTEKL 247

Query: 232 -----AKEVMDLIMITQYFDTIKDLGNSSNNTTVFL 262
                A+E +  ++  QY +    +G+S ++  +FL
Sbjct: 248 SSDNHAREALQFLLAQQYLNMGTTIGSSDSSKVMFL 283

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P0DKS0|QMCA_WIGBR Protein QmcA OS=Wigglesworthia glossinidia brevipalpis GN=qmcA PE=3 SV=1

 Score = 74.7 bits (182), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 127/279 (45%), Gaps = 43/279 (15%)

Query: 20  VERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIE-------TKTKDNVFVQL 72
           +ER+G++ +   PG++F  P   +     +  +IN ++  I+       +K   NV +  
Sbjct: 29  IERFGKYIETLNPGINFIIPFVDR-----IGHKINMMERVIDIPSQEIISKDNANVTIDA 83

Query: 73  LCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLE 132
           +C IQ      NA++A Y + N +  I       +R ++  M LDE+  Q+  +   +L 
Sbjct: 84  ICFIQI----TNANNAAYRVSNLEIAIINLTMTNMRTVLGNMELDEMLSQRDNINIQLLN 139

Query: 133 ELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQR-----------LQLASVYKGE 181
            +++    +G  I  + + DI P   + ++MN    A+R           ++ A++ K E
Sbjct: 140 IVDEATKPWGVKITRVEIKDIRPPAELIESMNAQMKAERTKRADILEAEGIRQAAILKAE 199

Query: 182 AEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLI-- 239
            EK  Q+ +AE E +++ L   G  RQ + +    +E       + E  S K + D I  
Sbjct: 200 GEKQSQILKAEGEKQSQILKAEG-ERQSEFLKSEAKER----DSEAEAYSTKIISDAISS 254

Query: 240 ---------MITQYFDTIKDLGNSSNNTTVFLPHGPGHV 269
                    +  +Y + IK+LG+S+++  + LP   G +
Sbjct: 255 GNMNSIKYFIAKKYTNAIKELGSSNSSKVIMLPLNTGDL 293

Wigglesworthia glossinidia brevipalpis (taxid: 36870)

>sp|P0AA56|QMCA_SHIFL Protein QmcA OS=Shigella flexneri GN=qmcA PE=3 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 32/262 (12%)

Query: 20  VERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINS----LDV---RIETKTKDNVFVQL 72
           VER+GR+ K  +PGL    P   +     +  +IN     LD+    + +K   NV +  
Sbjct: 31  VERFGRYTKTLQPGLSLVVPFMDR-----IGRKINMMEQVLDIPSQEVISKDNANVTIDA 85

Query: 73  LCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLE 132
           +C IQ      +A  A YE+ N +  I       +R ++  M LDE+  Q+  +   +L 
Sbjct: 86  VCFIQV----IDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLR 141

Query: 133 ELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQR-----------LQLASVYKGE 181
            +++    +G  +  I + D+ P   +  +MN    A+R           ++ A + K E
Sbjct: 142 IVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAE 201

Query: 182 AEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMI 241
            EK  Q+ +AE E ++ +L     AR+R A  +     ++  S  +     + V +  + 
Sbjct: 202 GEKQSQILKAEGERQSAFLQ--AEARERSAEAEARATKMV--SEAIASGDIQAV-NYFVA 256

Query: 242 TQYFDTIKDLGNSSNNTTVFLP 263
            +Y + ++ +G+SSN+  V +P
Sbjct: 257 QKYTEALQQIGSSSNSKVVMMP 278

Shigella flexneri (taxid: 623)

>sp|P0AA53|QMCA_ECOLI Protein QmcA OS=Escherichia coli (strain K12) GN=qmcA PE=1 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 32/262 (12%)

Query: 20  VERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINS----LDV---RIETKTKDNVFVQL 72
           VER+GR+ K  +PGL    P   +     +  +IN     LD+    + +K   NV +  
Sbjct: 31  VERFGRYTKTLQPGLSLVVPFMDR-----IGRKINMMEQVLDIPSQEVISKDNANVTIDA 85

Query: 73  LCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLE 132
           +C IQ      +A  A YE+ N +  I       +R ++  M LDE+  Q+  +   +L 
Sbjct: 86  VCFIQV----IDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLR 141

Query: 133 ELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQR-----------LQLASVYKGE 181
            +++    +G  +  I + D+ P   +  +MN    A+R           ++ A + K E
Sbjct: 142 IVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAE 201

Query: 182 AEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMI 241
            EK  Q+ +AE E ++ +L     AR+R A  +     ++  S  +     + V +  + 
Sbjct: 202 GEKQSQILKAEGERQSAFLQ--AEARERSAEAEARATKMV--SEAIASGDIQAV-NYFVA 256

Query: 242 TQYFDTIKDLGNSSNNTTVFLP 263
            +Y + ++ +G+SSN+  V +P
Sbjct: 257 QKYTEALQQIGSSSNSKVVMMP 278

Identified as a multi-copy suppressor of an FtsH/HtpX protease double disruption mutant. May play a role in the quality control of integral membrane proteins.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AA54|QMCA_ECOL6 Protein QmcA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=qmcA PE=3 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 32/262 (12%)

Query: 20  VERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINS----LDV---RIETKTKDNVFVQL 72
           VER+GR+ K  +PGL    P   +     +  +IN     LD+    + +K   NV +  
Sbjct: 31  VERFGRYTKTLQPGLSLVVPFMDR-----IGRKINMMEQVLDIPSQEVISKDNANVTIDA 85

Query: 73  LCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLE 132
           +C IQ      +A  A YE+ N +  I       +R ++  M LDE+  Q+  +   +L 
Sbjct: 86  VCFIQV----IDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLR 141

Query: 133 ELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQR-----------LQLASVYKGE 181
            +++    +G  +  I + D+ P   +  +MN    A+R           ++ A + K E
Sbjct: 142 IVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAE 201

Query: 182 AEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMI 241
            EK  Q+ +AE E ++ +L     AR+R A  +     ++  S  +     + V +  + 
Sbjct: 202 GEKQSQILKAEGERQSAFLQ--AEARERSAEAEARATKMV--SEAIASGDIQAV-NYFVA 256

Query: 242 TQYFDTIKDLGNSSNNTTVFLP 263
            +Y + ++ +G+SSN+  V +P
Sbjct: 257 QKYTEALQQIGSSSNSKVVMMP 278

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
297790149	292	band 7 family protein [Arabidopsis lyrat	0.986	0.979	0.905	1e-154
15242123	292	Hypersensitive-induced response protein	0.986	0.979	0.902	1e-153
255539701	291	Protein PPLZ12, putative [Ricinus commun	0.993	0.989	0.902	1e-150
224136794	291	predicted protein [Populus trichocarpa]	0.996	0.993	0.871	1e-147
359806306	292	hypersensitive-induced response protein	0.993	0.986	0.868	1e-143
356530957	292	PREDICTED: hypersensitive-induced respon	0.993	0.986	0.864	1e-143
224120222	291	predicted protein [Populus trichocarpa]	0.996	0.993	0.861	1e-142
449460792	302	PREDICTED: hypersensitive-induced respon	0.986	0.947	0.867	1e-142
388502298	292	unknown [Medicago truncatula]	0.993	0.986	0.819	1e-141
217071730	292	unknown [Medicago truncatula]	0.993	0.986	0.815	1e-140

>gi|297790149|ref|XP_002862981.1| band 7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297308772|gb|EFH39240.1| band 7 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 259/286 (90%), Positives = 277/286 (96%)

Query: 1   MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
           MGN++C+L GCIDQASVG+VERWGRFE +AEPG HFFNP AGQWLAG+LSTRINSLDV+I
Sbjct: 1   MGNTYCLLGGCIDQASVGVVERWGRFEHIAEPGCHFFNPLAGQWLAGVLSTRINSLDVKI 60

Query: 61  ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           ETKTKDNVFVQL+CSIQYR+V+A+ADDAFYELQNPKEQIQAYVFDVVRALVP MTLD LF
Sbjct: 61  ETKTKDNVFVQLVCSIQYRVVKASADDAFYELQNPKEQIQAYVFDVVRALVPMMTLDALF 120

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
           EQKGEVAK+VLEELEKVMGAYGYSIEHILMVDI+PDP+VRKAMNEINAAQRLQLASVYKG
Sbjct: 121 EQKGEVAKSVLEELEKVMGAYGYSIEHILMVDILPDPSVRKAMNEINAAQRLQLASVYKG 180

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
           EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFS KVEG SAKEVMDLIM
Sbjct: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSDKVEGTSAKEVMDLIM 240

Query: 241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAA 286
           ITQYFDTI+DLGNSS NTTVFLPHGPGHVRDISDQIRNG+MEA+A+
Sbjct: 241 ITQYFDTIRDLGNSSKNTTVFLPHGPGHVRDISDQIRNGMMEAAAS 286

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242123|ref|NP_199970.1| Hypersensitive-induced response protein 4 [Arabidopsis thaliana] gi|75271994|sp|Q9FHM7.1|HIR4_ARATH RecName: Full=Hypersensitive-induced response protein 4; Short=AtHIR4 gi|9758199|dbj|BAB08673.1| unnamed protein product [Arabidopsis thaliana] gi|30017237|gb|AAP12852.1| At5g51570 [Arabidopsis thaliana] gi|110735907|dbj|BAE99929.1| hypothetical protein [Arabidopsis thaliana] gi|332008716|gb|AED96099.1| Hypersensitive-induced response protein 4 [Arabidopsis thaliana]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 258/286 (90%), Positives = 276/286 (96%)

Query: 1   MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
           MGN++C+L GCI+QASVG+VERWGRFE +AEPG HFFNP AGQWLAG+LSTRI SLDV+I
Sbjct: 1   MGNTYCILGGCIEQASVGVVERWGRFEHIAEPGCHFFNPLAGQWLAGVLSTRIKSLDVKI 60

Query: 61  ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           ETKTKDNVFVQL+CSIQYR+V+A+ADDAFYELQNPKEQIQAYVFDVVRALVP MTLD LF
Sbjct: 61  ETKTKDNVFVQLVCSIQYRVVKASADDAFYELQNPKEQIQAYVFDVVRALVPMMTLDALF 120

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
           EQKGEVAK+VLEELEKVMGAYGYSIEHILMVDIIPDP+VRKAMNEINAAQRLQLASVYKG
Sbjct: 121 EQKGEVAKSVLEELEKVMGAYGYSIEHILMVDIIPDPSVRKAMNEINAAQRLQLASVYKG 180

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
           EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFS KVEG SAKEVMDLIM
Sbjct: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSDKVEGTSAKEVMDLIM 240

Query: 241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAA 286
           ITQYFDTI+DLGNSS NTTVFLPHGPGHVRDISDQIRNG+MEA+A+
Sbjct: 241 ITQYFDTIRDLGNSSKNTTVFLPHGPGHVRDISDQIRNGMMEAAAS 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539701|ref|XP_002510915.1| Protein PPLZ12, putative [Ricinus communis] gi|223550030|gb|EEF51517.1| Protein PPLZ12, putative [Ricinus communis]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/288 (90%), Positives = 281/288 (97%)

Query: 1   MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
           MGNSFC LCGCIDQAS+G++ERWGRFEKLAEPGLHFFNPCAGQ+LAG+LSTRI+SLDVRI
Sbjct: 1   MGNSFCFLCGCIDQASIGVIERWGRFEKLAEPGLHFFNPCAGQFLAGVLSTRISSLDVRI 60

Query: 61  ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           ETKTKDNVFVQL+CSIQYR+V+ANADDAFYEL NP+EQIQAYVFDVVRALVPRMTLDELF
Sbjct: 61  ETKTKDNVFVQLVCSIQYRVVKANADDAFYELANPEEQIQAYVFDVVRALVPRMTLDELF 120

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
           EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPD +VRKAMNEINAAQRLQLASVYKG
Sbjct: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDASVRKAMNEINAAQRLQLASVYKG 180

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
           EAEK+LQVK+AEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEG +AKEVMDLIM
Sbjct: 181 EAEKVLQVKKAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTTAKEVMDLIM 240

Query: 241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQV 288
           +TQYFDTIKDLGNSS  TT+F+PHGPGHVRDI +QIRNG+MEA++AQV
Sbjct: 241 VTQYFDTIKDLGNSSEKTTIFIPHGPGHVRDIGEQIRNGMMEAASAQV 288

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136794|ref|XP_002322417.1| predicted protein [Populus trichocarpa] gi|222869413|gb|EEF06544.1| predicted protein [Populus trichocarpa]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/289 (87%), Positives = 268/289 (92%)

Query: 1   MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
           MGN+ C LCGC+DQASVG+VERWGRFE+LA PG HFFN  AGQ LAG+LSTRI+SLDVRI
Sbjct: 1   MGNTCCFLCGCVDQASVGVVERWGRFERLAPPGFHFFNCLAGQCLAGVLSTRIHSLDVRI 60

Query: 61  ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           ETKTKDNVFVQL+CSIQYRIV+ NADDAFYEL NP+EQIQAYVFDVVRA+VPRM LDELF
Sbjct: 61  ETKTKDNVFVQLVCSIQYRIVKENADDAFYELANPREQIQAYVFDVVRAIVPRMALDELF 120

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
           EQKGEVA AVLEELEKVMGAYGY IEHILMVDIIPD  VR+AMNEINAAQRLQLASVYKG
Sbjct: 121 EQKGEVAIAVLEELEKVMGAYGYCIEHILMVDIIPDDTVRRAMNEINAAQRLQLASVYKG 180

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
           EAEK+L VKRAEA+AEAKYLGGVGVARQRQAITDGLRENIL FSHKV G SAKEVMDLIM
Sbjct: 181 EAEKVLLVKRAEADAEAKYLGGVGVARQRQAITDGLRENILEFSHKVTGTSAKEVMDLIM 240

Query: 241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQVE 289
           ITQYFDTIKDLGNSS NTTVF+PHGPGHVRDI DQIRNGLMEAS AQ++
Sbjct: 241 ITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGDQIRNGLMEASCAQID 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806306|ref|NP_001241478.1| hypersensitive-induced response protein 4-like [Glycine max] gi|255647671|gb|ACU24297.1| unknown [Glycine max] gi|354683201|gb|AER30499.1| hypersensitive induced reaction protein 4 [Glycine max]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/288 (86%), Positives = 273/288 (94%)

Query: 1   MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
           MGN+FC+ CGC+ Q+SVG+VE+WGRF +LA+PG HFFNP AG+ L+GILSTRI+SLDVRI
Sbjct: 1   MGNTFCLFCGCVAQSSVGVVEQWGRFHRLAQPGFHFFNPLAGECLSGILSTRISSLDVRI 60

Query: 61  ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           ETKTKDNVFVQLLCSIQYR+++ NADDAFYELQNP+EQIQAYVFDV RA+VPRM LDELF
Sbjct: 61  ETKTKDNVFVQLLCSIQYRVIKENADDAFYELQNPQEQIQAYVFDVTRAIVPRMNLDELF 120

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
           EQKGEVAKAVLEELEKVMG YGYSIEHILMVDIIPDPAVRKAMNEINAAQR+QLAS YKG
Sbjct: 121 EQKGEVAKAVLEELEKVMGEYGYSIEHILMVDIIPDPAVRKAMNEINAAQRMQLASQYKG 180

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
           EAEKIL VK+AEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEG +AKEVMDLIM
Sbjct: 181 EAEKILLVKKAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTNAKEVMDLIM 240

Query: 241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQV 288
           ITQYFDTIKDLGNSS NTTVF+PHGPGHVRDI +QIRNGLMEA++AQV
Sbjct: 241 ITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGEQIRNGLMEAASAQV 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530957|ref|XP_003534045.1| PREDICTED: hypersensitive-induced response protein 4-like [Glycine max]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 249/288 (86%), Positives = 272/288 (94%)

Query: 1   MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
           MGN+FC  CGC+ Q+SVG+VE+WGRF +LA+PG HFFNP AG+ L+GILSTRI+SLDVRI
Sbjct: 1   MGNTFCFFCGCVAQSSVGVVEQWGRFHRLAQPGFHFFNPLAGECLSGILSTRISSLDVRI 60

Query: 61  ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           ETKTKDNVFVQLLCSIQYR+++ NADDAFYELQNP+EQIQAYVFDV RA+VPRM LDELF
Sbjct: 61  ETKTKDNVFVQLLCSIQYRVIKENADDAFYELQNPQEQIQAYVFDVTRAIVPRMNLDELF 120

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
           EQKGEVAKAVLEELEKVMG YGYSIEHILMVDIIPDPAVRKAMNEINAAQR+QLAS YKG
Sbjct: 121 EQKGEVAKAVLEELEKVMGEYGYSIEHILMVDIIPDPAVRKAMNEINAAQRMQLASEYKG 180

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
           EAEK+L VK+AEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEG +AKEVMDLIM
Sbjct: 181 EAEKVLLVKKAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTNAKEVMDLIM 240

Query: 241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQV 288
           ITQYFDTIKDLGNSS NTTVF+PHGPGHVRDI +QIRNGLMEA++AQV
Sbjct: 241 ITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGEQIRNGLMEAASAQV 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120222|ref|XP_002318276.1| predicted protein [Populus trichocarpa] gi|222858949|gb|EEE96496.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/289 (86%), Positives = 270/289 (93%)

Query: 1   MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
           MG+SFC LCGC+DQASVG++ERWGRFE+LA+PG HFFN   GQ LAG+LSTRI+SLDVR 
Sbjct: 1   MGSSFCFLCGCVDQASVGVIERWGRFERLAQPGFHFFNCFVGQCLAGVLSTRIHSLDVRC 60

Query: 61  ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           ETKTKDNVFV L+CSIQYR+V+ NADDAFYEL NP+EQIQAYVFDVVRALVPRMTLD+LF
Sbjct: 61  ETKTKDNVFVHLVCSIQYRVVKENADDAFYELANPREQIQAYVFDVVRALVPRMTLDDLF 120

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
           EQK EVAKAVLEELEKVMG YGYSIEHILMVDIIPD  VRKAMNEINAAQRLQLASVYKG
Sbjct: 121 EQKSEVAKAVLEELEKVMGTYGYSIEHILMVDIIPDDTVRKAMNEINAAQRLQLASVYKG 180

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
           EAEK+  VK+AEAEAEAKYLGGVGVARQRQAITDGLRENIL FSHKVEG SAKEVMDLIM
Sbjct: 181 EAEKVFLVKKAEAEAEAKYLGGVGVARQRQAITDGLRENILEFSHKVEGTSAKEVMDLIM 240

Query: 241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQVE 289
           ITQYFDTIKDLGNSS NTT+F+PHGPGHVRDISDQIRNG+MEAS+AQ++
Sbjct: 241 ITQYFDTIKDLGNSSKNTTIFIPHGPGHVRDISDQIRNGMMEASSAQID 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460792|ref|XP_004148128.1| PREDICTED: hypersensitive-induced response protein 4-like [Cucumis sativus] gi|449499654|ref|XP_004160876.1| PREDICTED: hypersensitive-induced response protein 4-like [Cucumis sativus]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/286 (86%), Positives = 274/286 (95%)

Query: 1   MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
           MGN++C+L GC++Q+SVG+VERWGRFEKLA+PGLHFFNP AG+ LAGILSTRI+SLDVRI
Sbjct: 1   MGNTYCVLFGCVEQSSVGVVERWGRFEKLAQPGLHFFNPFAGECLAGILSTRISSLDVRI 60

Query: 61  ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           ETKTKDNVFVQLLCSIQYR+++ NADDAFYELQNP+EQIQAYVFDVVRA+VP+M LDELF
Sbjct: 61  ETKTKDNVFVQLLCSIQYRVIKENADDAFYELQNPQEQIQAYVFDVVRAVVPKMNLDELF 120

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
           EQKGEVAKAV EELEKVMG YGYS+EHILMVDIIPD +VR+AMNEINAAQRLQLASVYKG
Sbjct: 121 EQKGEVAKAVSEELEKVMGDYGYSLEHILMVDIIPDASVRRAMNEINAAQRLQLASVYKG 180

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
           EAEK+L VK+AEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEG SAKEVMDLI+
Sbjct: 181 EAEKVLLVKKAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTSAKEVMDLIL 240

Query: 241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAA 286
           ITQYFDTIKDLGNSS NTTVF+PHGPGHVRDIS QIRNG+MEA+A+
Sbjct: 241 ITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDISGQIRNGMMEAAAS 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502298|gb|AFK39215.1| unknown [Medicago truncatula]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 236/288 (81%), Positives = 267/288 (92%)

Query: 1   MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
           MGN+FC+ CGC++Q+SVGIVE+WGRF+++A+PG   FNP AG+ LAGILSTRI SLDV+I
Sbjct: 1   MGNTFCLFCGCVEQSSVGIVEQWGRFQRVAQPGFQIFNPFAGECLAGILSTRIASLDVKI 60

Query: 61  ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           ETKTKDNVFVQLLCSIQYR+V+ NADDAFYELQNP+EQIQAYVFDV RA+VP+M LDELF
Sbjct: 61  ETKTKDNVFVQLLCSIQYRVVKENADDAFYELQNPQEQIQAYVFDVARAIVPKMNLDELF 120

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
           EQKGEVAK V+EEL KVMG YGYSIEHILMVDIIPDP+VR+AMNEINAAQRL LAS +KG
Sbjct: 121 EQKGEVAKGVMEELGKVMGEYGYSIEHILMVDIIPDPSVRRAMNEINAAQRLLLASEFKG 180

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
           EA+K+L VK+AEAEAE+K+LGGVGVARQRQAITDGLRENIL FS+KVEG SAKEVMDLIM
Sbjct: 181 EADKVLIVKKAEAEAESKFLGGVGVARQRQAITDGLRENILQFSNKVEGTSAKEVMDLIM 240

Query: 241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQV 288
           ITQYFDTI+DLGN+S NTTVF+PHGPGHVRDI DQIRNG+MEAS AQV
Sbjct: 241 ITQYFDTIRDLGNNSKNTTVFIPHGPGHVRDIGDQIRNGMMEASCAQV 288

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071730|gb|ACJ84225.1| unknown [Medicago truncatula]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/288 (81%), Positives = 266/288 (92%)

Query: 1   MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
           MGN+FC+ CGC++Q+SVGIVE+WGRF+++A+PG   FNP AG+ LAGILSTRI SLDV+I
Sbjct: 1   MGNTFCLFCGCVEQSSVGIVEQWGRFQRVAQPGFQIFNPFAGECLAGILSTRIASLDVKI 60

Query: 61  ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
           ETKTKDNVFVQLLCSIQYR+V+ NADDAFYELQNP+EQIQAYVFDV RA+VP+M LDELF
Sbjct: 61  ETKTKDNVFVQLLCSIQYRVVKENADDAFYELQNPQEQIQAYVFDVARAIVPKMNLDELF 120

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
           EQKGEVAK V+EEL KVMG YGYSIEHILMVDIIPDP+VR+AMNEINAAQRL LAS +KG
Sbjct: 121 EQKGEVAKGVMEELGKVMGEYGYSIEHILMVDIIPDPSVRRAMNEINAAQRLLLASEFKG 180

Query: 181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
           EA+K+L VK+AEAEAE+K+LGGVGVARQRQAITDGLRENIL FS+KVEG SAKEVMDLIM
Sbjct: 181 EADKVLIVKKAEAEAESKFLGGVGVARQRQAITDGLRENILQFSNKVEGTSAKEVMDLIM 240

Query: 241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQV 288
           ITQYFDTI+DLGN+S NTTVF+PHGPGHVRDI  QIRNG+MEAS AQV
Sbjct: 241 ITQYFDTIRDLGNNSKNTTVFIPHGPGHVRDIGVQIRNGMMEASCAQV 288

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
TAIR|locus:2153117	292	AT5G51570 [Arabidopsis thalian	0.986	0.979	0.902	1.2e-136
TAIR|locus:2170698	286	HIR1 "HYPERSENSITIVE-INDUCED R	0.986	1.0	0.590	1.1e-89
TAIR|locus:2100242	285	HIR2 "hypersensitive induced r	0.979	0.996	0.566	1.3e-86
TAIR|locus:2196749	286	AT1G69840 [Arabidopsis thalian	0.955	0.968	0.584	1.7e-84
UNIPROTKB|Q81JF5	321	BAS1928 "SPFH domain/Band 7 fa	0.703	0.635	0.288	1.2e-17
TIGR_CMR|BA_2075	321	BA_2075 "SPFH domain/Band 7 fa	0.703	0.635	0.288	1.2e-17
UNIPROTKB|Q602F1	309	MCA3112 "SPFH domain/Band 7 fa	0.851	0.799	0.249	9.5e-16
UNIPROTKB|Q5LQ79	296	SPO2617 "SPFH domain/band 7 fa	0.824	0.807	0.251	4.3e-15
TIGR_CMR|SPO_2617	296	SPO_2617 "SPFH domain/band 7 f	0.824	0.807	0.251	4.3e-15
ASPGD|ASPL0000036464	344	stoA [Emericella nidulans (tax	0.579	0.488	0.271	1.6e-13

TAIR|locus:2153117 AT5G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1338 (476.1 bits), Expect = 1.2e-136, P = 1.2e-136
 Identities = 258/286 (90%), Positives = 276/286 (96%)

Query:     1 MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
             MGN++C+L GCI+QASVG+VERWGRFE +AEPG HFFNP AGQWLAG+LSTRI SLDV+I
Sbjct:     1 MGNTYCILGGCIEQASVGVVERWGRFEHIAEPGCHFFNPLAGQWLAGVLSTRIKSLDVKI 60

Query:    61 ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
             ETKTKDNVFVQL+CSIQYR+V+A+ADDAFYELQNPKEQIQAYVFDVVRALVP MTLD LF
Sbjct:    61 ETKTKDNVFVQLVCSIQYRVVKASADDAFYELQNPKEQIQAYVFDVVRALVPMMTLDALF 120

Query:   121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
             EQKGEVAK+VLEELEKVMGAYGYSIEHILMVDIIPDP+VRKAMNEINAAQRLQLASVYKG
Sbjct:   121 EQKGEVAKSVLEELEKVMGAYGYSIEHILMVDIIPDPSVRKAMNEINAAQRLQLASVYKG 180

Query:   181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
             EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFS KVEG SAKEVMDLIM
Sbjct:   181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSDKVEGTSAKEVMDLIM 240

Query:   241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAA 286
             ITQYFDTI+DLGNSS NTTVFLPHGPGHVRDISDQIRNG+MEA+A+
Sbjct:   241 ITQYFDTIRDLGNSSKNTTVFLPHGPGHVRDISDQIRNGMMEAAAS 286

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2170698 HIR1 "HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 170/288 (59%), Positives = 225/288 (78%)

Query:     1 MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
             MGN FC  C  +DQ++V I E +G+FE + EPG HF   C G  +AG LS R+  LDVR 
Sbjct:     1 MGNLFC--CVQVDQSTVAIKETFGKFEDVLEPGCHFLPWCLGSQVAGYLSLRVQQLDVRC 58

Query:    61 ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
             ETKTKDNVFV ++ SIQYR +   A+DA+Y+L N + QIQAYVFDV+RA VP++ LD++F
Sbjct:    59 ETKTKDNVFVNVVASIQYRALANKANDAYYKLSNTRGQIQAYVFDVIRASVPKLLLDDVF 118

Query:   121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
             EQK ++AKAV EELEK M AYGY I   L+VDI PD  V++AMNEINAA R++LA+  K 
Sbjct:   119 EQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAANEKA 178

Query:   181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
             EAEKILQ+KRAE EAE+KYL G+G+ARQRQAI DGLR+++L F+  V G +AK+VMD+++
Sbjct:   179 EAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVL 238

Query:   241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQV 288
             +TQYFDT+K++G SS ++ VF+PHGPG VRD++ QIR+GL++ S+A +
Sbjct:   239 VTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQGSSANL 286

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2100242 HIR2 "hypersensitive induced reaction 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 162/286 (56%), Positives = 221/286 (77%)

Query:     1 MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI 60
             MGN FC  C  + Q+ V + ER+G+F+K+  PGL F     G ++AG L+ R+  LDV+ 
Sbjct:     1 MGNLFC--CVLVKQSDVAVKERFGKFQKVLNPGLQFVPWVIGDYVAGTLTLRLQQLDVQC 58

Query:    61 ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF 120
             ETKTKDNVFV ++ SIQYR++   A DAFY L NP  QI+AYVFDV+RA VP++ LD++F
Sbjct:    59 ETKTKDNVFVTVVASIQYRVLADKASDAFYRLSNPTTQIKAYVFDVIRACVPKLNLDDVF 118

Query:   121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKG 180
             EQK E+AK+V EEL+K M AYGY I   L++DI PD  V++AMNEINAA R+++A+  K 
Sbjct:   119 EQKNEIAKSVEEELDKAMTAYGYEILQTLIIDIEPDQQVKRAMNEINAAARMRVAASEKA 178

Query:   181 EAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240
             EAEKI+Q+KRAE EAE+KYL G+G+ARQRQAI DGLR+++L F+  V G SAK+V+D++M
Sbjct:   179 EAEKIIQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAGNVPGTSAKDVLDMVM 238

Query:   241 ITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAA 286
             +TQYFDT++D+G +S ++ VF+PHGPG V D++ QIRNGL++A+ A
Sbjct:   239 MTQYFDTMRDIGATSKSSAVFIPHGPGAVSDVAAQIRNGLLQANNA 284

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2196749 AT1G69840 [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 163/279 (58%), Positives = 213/279 (76%)

Query:    10 GCI--DQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDN 67
             GCI  DQ++V I E +G+F+++ EPG H    C G  +AG LS R+  LDVR ETKTKDN
Sbjct:     6 GCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCETKTKDN 65

Query:    68 VFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVA 127
             VFV ++ SIQYR +  +A DAFY+L N + QIQAYVFDV+RA VP++ LD  FEQK ++A
Sbjct:    66 VFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQKNDIA 125

Query:   128 KAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQ 187
             K V  ELEK M  YGY I   L+VDI PD  V++AMNEINAA R++ A+  K EAEKILQ
Sbjct:   126 KTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAASRMREAASEKAEAEKILQ 185

Query:   188 VKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDT 247
             +KRAE EAE+KYL G+G+ARQRQAI DGLR ++L FS  V G S+K+VMD++++TQYFDT
Sbjct:   186 IKRAEGEAESKYLSGMGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVTQYFDT 245

Query:   248 IKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAA 286
             +K++G SS + +VF+PHGPG VRDI+ QIR+GL++ ++A
Sbjct:   246 LKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQGNSA 284

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q81JF5 BAS1928 "SPFH domain/Band 7 family protein" [Bacillus anthracis (taxid:1392)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 60/208 (28%), Positives = 107/208 (51%)

Query:    12 IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETK-TKDNVFV 70
             I Q  VG+VER+G+F+++ +PGL+   P   + +      RI   +V  +   TKDNV V
Sbjct:    25 IPQQKVGVVERFGKFQRVMQPGLNLLIPIVDR-VRVYHDLRIQQTNVPPQKVITKDNVQV 83

Query:    71 QLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAV 130
             ++   I Y++V      A Y + N +  ++      +R ++ +M LDE    + +++  +
Sbjct:    84 EIDTIIFYQVVEPEL--ATYGISNYEYGVRNITSATMRQIIGKMELDETLSGREKISTEI 141

Query:   131 LEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKR 190
                L++    +G  IE + +VDI P   V+ +M +   A+R + A + + EA K  +V R
Sbjct:   142 RLALDEATEKWGVRIERVEVVDINPPKDVQASMEKQMKAERNKRAIILEAEAAKQDKVLR 201

Query:   191 AEAEAEAKYLGGVGVARQRQAITDGLRE 218
             AE E ++K L   G    R    +G++E
Sbjct:   202 AEGEKQSKILMAEGDKEARIREAEGIKE 229

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_2075 BA_2075 "SPFH domain/Band 7 family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 60/208 (28%), Positives = 107/208 (51%)

Query:    12 IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETK-TKDNVFV 70
             I Q  VG+VER+G+F+++ +PGL+   P   + +      RI   +V  +   TKDNV V
Sbjct:    25 IPQQKVGVVERFGKFQRVMQPGLNLLIPIVDR-VRVYHDLRIQQTNVPPQKVITKDNVQV 83

Query:    71 QLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAV 130
             ++   I Y++V      A Y + N +  ++      +R ++ +M LDE    + +++  +
Sbjct:    84 EIDTIIFYQVVEPEL--ATYGISNYEYGVRNITSATMRQIIGKMELDETLSGREKISTEI 141

Query:   131 LEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKR 190
                L++    +G  IE + +VDI P   V+ +M +   A+R + A + + EA K  +V R
Sbjct:   142 RLALDEATEKWGVRIERVEVVDINPPKDVQASMEKQMKAERNKRAIILEAEAAKQDKVLR 201

Query:   191 AEAEAEAKYLGGVGVARQRQAITDGLRE 218
             AE E ++K L   G    R    +G++E
Sbjct:   202 AEGEKQSKILMAEGDKEARIREAEGIKE 229

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q602F1 MCA3112 "SPFH domain/Band 7 family" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 206 (77.6 bits), Expect = 9.5e-16, P = 9.5e-16
 Identities = 65/261 (24%), Positives = 122/261 (46%)

Query:    12 IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFV 70
             + Q +   VER+G++ +   PG+++  P   Q +   L+     LDV   E  TKDN  V
Sbjct:    26 VPQGTEYTVERFGKYTRTLSPGINWIRPVIDQ-IGARLNMMEQVLDVPSQEVITKDNAMV 84

Query:    71 QLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAV 130
              +   + Y++V  +A  A YE+ N +  I       +R ++  M LDEL  ++ E+   +
Sbjct:    85 TVNGVVFYQVV--DAARAAYEVNNLQFAIMQLTMTNIRTVMGSMDLDELLSKRDEINARL 142

Query:   131 LEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKR 190
             L  ++     +G  +  I + DI P   +  +M     A+R + A++ + E  +  ++ +
Sbjct:   143 LTVVDDATTPWGVKVTRIEIKDIAPPQDLVDSMARQMKAERDKRAAILEAEGHRQAEILK 202

Query:   191 AEAEAEAKYLGGVGVARQRQAITDG-LRENILNFSHK----VEGASAK---EVMDLIMIT 242
             AE E +A  L   G  R+  A  D   RE +     +    V  A AK   + ++  +  
Sbjct:   203 AEGEKQAMILEAEG--RREAAFRDAEARERLAEAEARATALVSEAIAKGDIQAVNYFVAQ 260

Query:   243 QYFDTIKDLGNSSNNTTVFLP 263
             +Y + ++D+  + NN  + +P
Sbjct:   261 KYVEALRDVAAAPNNKLILMP 281

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LQ79 SPO2617 "SPFH domain/band 7 family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 201 (75.8 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 65/258 (25%), Positives = 119/258 (46%)

Query:    12 IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETK-----TKD 66
             + Q+   +VER+GR   +  PG++F  P        ++  +I+ L+ ++ T      TKD
Sbjct:    34 VPQSEKFVVERFGRLHAVLGPGINFIVP-----FLDVVRHKISILERQLPTASQDAITKD 88

Query:    67 NVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEV 126
             NV VQ+  S+ YRI     +   Y +++    I   V  +VRA + +M LDE+   + ++
Sbjct:    89 NVLVQVDTSVFYRITEP--EKTVYRIRDVDGAISTTVAGIVRAEIGKMDLDEVQSNRAQL 146

Query:   127 AKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAM-NEINAAQRLQLASVYKGEAEKI 185
                +   +E  +  +G  +    ++D+  D A R AM  ++NA +R + A V K E  K 
Sbjct:   147 ISTIKSSVEDAVDDWGIEVTRAEILDVNLDQATRDAMLQQLNA-ERERRAQVTKAEGAK- 204

Query:   186 LQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYF 245
              +     A+AE         AR+ +A  +     ++  +    G  A +    + + Q  
Sbjct:   205 -RAVELNADAELYAAEQTAKARRIEAEAEAYATEVVARAIAAHGLEAAQYQ--VALKQV- 260

Query:   246 DTIKDLGNSSNNTTVFLP 263
             + +  LGN +   T+ LP
Sbjct:   261 EALNALGNGAGKQTIILP 278

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2617 SPO_2617 "SPFH domain/band 7 family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 201 (75.8 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 65/258 (25%), Positives = 119/258 (46%)

Query:    12 IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETK-----TKD 66
             + Q+   +VER+GR   +  PG++F  P        ++  +I+ L+ ++ T      TKD
Sbjct:    34 VPQSEKFVVERFGRLHAVLGPGINFIVP-----FLDVVRHKISILERQLPTASQDAITKD 88

Query:    67 NVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEV 126
             NV VQ+  S+ YRI     +   Y +++    I   V  +VRA + +M LDE+   + ++
Sbjct:    89 NVLVQVDTSVFYRITEP--EKTVYRIRDVDGAISTTVAGIVRAEIGKMDLDEVQSNRAQL 146

Query:   127 AKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAM-NEINAAQRLQLASVYKGEAEKI 185
                +   +E  +  +G  +    ++D+  D A R AM  ++NA +R + A V K E  K 
Sbjct:   147 ISTIKSSVEDAVDDWGIEVTRAEILDVNLDQATRDAMLQQLNA-ERERRAQVTKAEGAK- 204

Query:   186 LQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYF 245
              +     A+AE         AR+ +A  +     ++  +    G  A +    + + Q  
Sbjct:   205 -RAVELNADAELYAAEQTAKARRIEAEAEAYATEVVARAIAAHGLEAAQYQ--VALKQV- 260

Query:   246 DTIKDLGNSSNNTTVFLP 263
             + +  LGN +   T+ LP
Sbjct:   261 EALNALGNGAGKQTIILP 278

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000036464 stoA [Emericella nidulans (taxid:162425)]

 Score = 186 (70.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 47/173 (27%), Positives = 93/173 (53%)

Query:    12 IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDV-RIETKTKDNVFV 70
             + Q  VG+V R+GRFE+  +PGL   NP + + +   +  +I  ++V R    TKDNV +
Sbjct:    89 VQQGEVGLVTRFGRFERAVDPGLVKVNPLSERLIT--IDVKIQIVEVPRQICMTKDNVTL 146

Query:    71 QLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAV 130
              L   I Y++V  +   A + + N K+ +       +R ++    L ++ E++ E+A++ 
Sbjct:   147 NLTSVIYYQVVSPHK--AAFGISNIKQALVERTQTTLRHVIGARVLQDVIERREEIAQST 204

Query:   131 LEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAE 183
              E +E+V   +G ++E +L+ DII    ++ +++    ++R+  + V    AE
Sbjct:   205 SEIIEEVASGWGVNVESMLIKDIIFSDDLQDSLSMAAQSKRIGESKVIAARAE 257

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P16148	PLZ12_LUPPO	No assigned EC number	0.8857	0.6034	0.9510	N/A	no
Q9FHM7	HIR4_ARATH	No assigned EC number	0.9020	0.9862	0.9794	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
cd03407	262	cd03407, Band_7_4, A subgroup of the band 7 domain	1e-137
cd03403	215	cd03403, Band_7_stomatin_like, Band_7_stomatin_lik	1e-30
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	1e-30
pfam01145	177	pfam01145, Band_7, SPFH domain / Band 7 family	3e-29
cd02106	121	cd02106, Band_7, The band 7 domain of flotillin (r	3e-21
smart00244	160	smart00244, PHB, prohibitin homologues	3e-19
cd03404	266	cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma	4e-14
TIGR01933	261	TIGR01933, hflK, HflK protein	2e-09
cd03401	196	cd03401, Band_7_prohibitin, Band_7_prohibitin	8e-07
cd03405	242	cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma	3e-06
cd03400	124	cd03400, Band_7_1, A subgroup of the band 7 domain	4e-06

>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score =  387 bits (995), Expect = e-137
 Identities = 158/264 (59%), Positives = 200/264 (75%), Gaps = 2/264 (0%)

Query: 14  QASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLL 73
           Q+ V I+ER+G+F K+A PG HF  P   + +AG LS R+  LDVR+ETKTKDNVFV ++
Sbjct: 1   QSQVAIIERFGKFFKVAWPGCHFVIPL-VETVAGRLSLRVQQLDVRVETKTKDNVFVTVV 59

Query: 74  CSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEE 133
             IQYR+   NA DAFY+L NP+EQIQ+YVFDV+RA +P++TLDELFEQK E+AKAV EE
Sbjct: 60  GQIQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEE 119

Query: 134 LEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEA 193
           L + M  YG+ I   L+ DI PD  V++AMNEINAAQR ++A+V+K EAEKI  +K AEA
Sbjct: 120 LREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEA 179

Query: 194 EAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGN 253
           +AEAK L GVG A QRQAI DGLRE+IL+ +  V G +AK+VMDL+++ QYFDT+K  G 
Sbjct: 180 DAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239

Query: 254 SSNNTTVFLPHGPGHVRDISDQIR 277
           SS +T VF PHGPG  +DI  QIR
Sbjct: 240 SS-STVVFRPHGPGGAQDIYAQIR 262

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 262

>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

 Score =  113 bits (286), Expect = 1e-30
 Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 6/203 (2%)

Query: 12  IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDV-RIETKTKDNVFV 70
           + Q   G+VER G++ +   PGLHF  P   +     +  R   LDV   E  TKDNV V
Sbjct: 1   VPQYERGVVERLGKYHRTLGPGLHFIIPFIDRIAY-KVDLREQVLDVPPQEVITKDNVTV 59

Query: 71  QLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAV 130
           ++   + YR+V  +   A Y +++ +  I       +R+++ +M LDEL  ++ E+   +
Sbjct: 60  RVDAVLYYRVV--DPVKAVYGVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAEL 117

Query: 131 LEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKR 190
           +E L++    +G  +E + + DII    +++AM +   A+R + A + + E E+  Q   
Sbjct: 118 VEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKIIEAEGER--QAAI 175

Query: 191 AEAEAEAKYLGGVGVARQRQAIT 213
             AEA  +        + R+  T
Sbjct: 176 LLAEAAKQAAINPAALQLRELET 198

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score =  115 bits (290), Expect = 1e-30
 Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 12/262 (4%)

Query: 12  IDQASVGIVERWGRFEK-LAEPGLHFFNPCAGQW--LAGILSTRINSLDVR--IETKTKD 66
           + +   G+V R+GR+ + L EPGLHF  P       +   +  R  +LDV    E  TKD
Sbjct: 24  VKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKD 83

Query: 67  NVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELF-EQKGE 125
           NV V +   +QYR+       A Y ++N +  ++  V   +R+++ RMTLDEL  E++ E
Sbjct: 84  NVIVSVDAVVQYRVTDPQK--AVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAE 141

Query: 126 VAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKI 185
           +   + E L++    +G  +  + + DI P   V+ AM +  AA+R + A + + E E  
Sbjct: 142 INAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQ 201

Query: 186 LQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYF 245
             + RAE EAEA  +       + + I     +     +               +  +Y 
Sbjct: 202 AAILRAEGEAEAAIILAEA-EAEAEVIARAEADAAKIIA---AALREAPAAPQALAQRYL 257

Query: 246 DTIKDLGNSSNNTTVFLPHGPG 267
           + + ++  + N+  V +P+  G
Sbjct: 258 EELLEIALAGNSKVVVVPNSAG 279

Length = 291

>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family

 Score =  108 bits (273), Expect = 3e-29
 Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 21/191 (10%)

Query: 12  IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGI--LSTRINSLDV--RIETKTKDN 67
           +    VG+V R+G+  ++  PGLHF  P    ++  I  + TR+ +L+V   I   TKD 
Sbjct: 3   VPPGEVGVVTRFGKVSRVLGPGLHFKLP----FIQTITVVDTRLQTLEVTVDITVLTKDG 58

Query: 68  VFVQLLCSIQYRIVRAN-ADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEV 126
           V V +  ++QYR+         +   ++ +E ++  V   +R ++ R TLDEL   + E+
Sbjct: 59  VPVNVDVTVQYRVEDPAKLVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNREEI 118

Query: 127 AKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKIL 186
           A+ V E L++ +  YG  IE + + DI P P + +A+ E  AA++            +  
Sbjct: 119 AQEVKEALQEELEKYGLEIEDVQITDIDPPPEIAEAIEEKQAAEQ------------EAE 166

Query: 187 QVKRAEAEAEA 197
           + +   AEAEA
Sbjct: 167 EAEIERAEAEA 177

This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals. Length = 177

>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins

 Score = 86.6 bits (215), Expect = 3e-21
 Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 48  ILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNP--KEQIQAYVFD 105
           I   R        E  TKDNV V++   +QYR+V  +   A Y +++P  +E ++     
Sbjct: 2   IDLRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVV--DPVKALYNVRDPEDEEALRQLAQS 59

Query: 106 VVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNE 165
            +R+++ +MTLDEL E + E+A  V E L++ +  YG  +  + + DI P   V++AM +
Sbjct: 60  ALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMED 119

Query: 166 IN 167
             
Sbjct: 120 RQ 121

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 121

>gnl|CDD|214581 smart00244, PHB, prohibitin homologues

 Score = 82.3 bits (204), Expect = 3e-19
 Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 15/163 (9%)

Query: 12  IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVR-IETKTKDNVFV 70
           + +   G+VER GR  ++  PGLHF  P         +  R  + DV   ET TKDNV V
Sbjct: 6   VGEGERGVVERLGRVLRVLGPGLHFLIPFIDD--VKKVDLRAQTDDVPPQETITKDNVKV 63

Query: 71  QLLCSIQYRIV-----RANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFE-QKG 124
            +   + YR++          DA Y        I+      +R+++ + TLDEL   Q+ 
Sbjct: 64  SVDAVVYYRVLDPLRAVYRVLDADY------AVIEQLAQTTLRSVIGKRTLDELLTDQRE 117

Query: 125 EVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEIN 167
           ++++ + EEL +   A+G  +E + + DI     +++AM    
Sbjct: 118 KISENIREELNEAAEAWGIKVEDVEIKDIRLPEEIKEAMEAQQ 160

prohibitin homologues. Length = 160

>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

 Score = 70.3 bits (173), Expect = 4e-14
 Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 32/215 (14%)

Query: 12  IDQASVGIVERWGRFEKLAEPGLHF----------FNPCAGQWLAGILSTRINSLDVRIE 61
           +     G+V R+G++ +  EPGLH+            P       GI     +   V  E
Sbjct: 18  VQPGERGVVLRFGKYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGE 77

Query: 62  TK--TKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDE- 118
           +   T D   V +  ++QYRI   +  D  + +++P+  ++      +R +V R TLD+ 
Sbjct: 78  SLMLTGDENIVDVEFAVQYRIS--DPYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDV 135

Query: 119 LFEQKGEVAKAVLEELEKVMGAY--GYSIEHILMVDIIPDPAVRKAMNEINAAQ----RL 172
           L E + E+A+ V E L+ ++ AY  G  I  + + D  P   V+ A +++N A+    RL
Sbjct: 136 LTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERL 195

Query: 173 Q-LASVY--------KGEAEKILQVKRAEAEAEAK 198
              A  Y        +GEA +I+Q   AEA  E  
Sbjct: 196 INEAEAYANEVVPKARGEAARIIQ--EAEAYKEEV 228

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 266

>gnl|CDD|130988 TIGR01933, hflK, HflK protein

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 51/254 (20%), Positives = 116/254 (45%), Gaps = 38/254 (14%)

Query: 12  IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQ 71
           I +A  G+V R+G++ +  +PGL++  P   + +  +  T + +L  +    T D   V 
Sbjct: 4   IGEAERGVVLRFGKYHRTVDPGLNWKPPFI-EEVYPVNVTAVRNLRKQGLMLTGDENIVN 62

Query: 72  LLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDE-LFEQKGEVAKAV 130
           +  ++QYRI   +     + ++NP++ ++      +R ++   T+D+ L E + ++ +  
Sbjct: 63  VEMNVQYRIT--DPYKYLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDT 120

Query: 131 LEELEKVMGAYGYSIEHILMVDI---IPDPAVRKAMNEINAAQR-----LQLASVY---- 178
            E L +++  Y   I  +  V+     P   V++A +++  A+      +  A  Y    
Sbjct: 121 KERLNEIIDNYDLGIT-VTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYANEV 179

Query: 179 ----KGEAEKILQ---------VKRAEAEAE------AKYLGGVGVARQRQAITDGLREN 219
               +G+A++I++         + RA+ +        A+Y     V R+R  + + + + 
Sbjct: 180 VPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRERLYL-ETMEK- 237

Query: 220 ILNFSHKVEGASAK 233
           +L+ + KV     K
Sbjct: 238 VLSNTRKVLLDDKK 251

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PMID:8947034,PMID:96367) [SS 8/27/03]. Length = 261

>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 11/172 (6%)

Query: 33  GLHFFNPCAGQWLAGILSTRINSLDVRIE--TKTKDNVFVQLLCSIQYRIVRANADDAFY 90
           GLHF  P    W    +   + +    IE  T +KD   V +   + +R   +     + 
Sbjct: 28  GLHFRIP----WFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLPRIYQ 83

Query: 91  EL-QNPKEQIQA-YVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHI 148
            L ++  E++    + +V++A+V + T +EL  Q+ EV+  + E L +    +G  ++ +
Sbjct: 84  NLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDV 143

Query: 149 LMVDIIPDPAVRKAMNEINAAQRLQLASVY---KGEAEKILQVKRAEAEAEA 197
            +  +       KA+     AQ+    + +   K E EK   V RAE EAEA
Sbjct: 144 SITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEAEA 195

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology. Length = 196

>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 42/224 (18%)

Query: 12  IDQASVGIVERWGRFEK-LAEPGLHFFNPCAGQWLAGILSTRINSLDV---RIETKTKDN 67
           +D+    +V R+G   + + EPGLHF  P   Q        RI +LD    R+ TK K  
Sbjct: 4   VDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQ--VKKFDKRILTLDSDPQRVLTKDKKR 61

Query: 68  VFVQLLCSIQYRIVRANADDA-FY-----ELQNPKEQIQAYVFDVVRALVPRMTLDEL-F 120
           + V      ++RI     D   FY     E +  + ++   V   +RA   + TL EL  
Sbjct: 62  LIVDAY--AKWRIT----DPLRFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVS 115

Query: 121 EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDI------IPDPAVRKAMNEINAAQRLQL 174
            ++GE+ + +   + +     G     I +VD+      +P+  V +++     A+R ++
Sbjct: 116 GERGELMEEIRRAVAEEAKELG-----IEVVDVRIKRIDLPE-EVSESVYRRMRAERERI 169

Query: 175 ASVYK----GEAEKI-------LQVKRAEAEAEAKYLGGVGVAR 207
           A+ ++     EAE+I         V  AEA  EA+ + G G A 
Sbjct: 170 AAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAE 213

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 242

>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 47  GILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYEL-QNPKEQIQAYVFD 105
           G  STR+  +D +I+  +K+ + +    S+QYRI    A     +L  +   +I    F 
Sbjct: 1   GEYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFR 60

Query: 106 V-VRALVPRMTLDELF-EQKGEVAKAVLEELEKVMGAYGYSIEHILMVDI-IPD 156
             VR +  R T ++++  ++ E+  A+ +EL +     G  +E +L+ +I +PD
Sbjct: 61  SLVREVTGRYTAEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPD 114

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	100.0
KOG2620	301	consensus Prohibitins and stomatins of the PID sup	100.0
PRK11029	334	FtsH protease regulator HflC; Provisional	100.0
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	100.0
PRK10930	419	FtsH protease regulator HflK; Provisional	100.0
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	100.0
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	100.0
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	100.0
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	100.0
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	100.0
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	100.0
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	100.0
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	100.0
KOG2621	288	consensus Prohibitins and stomatins of the PID sup	100.0
smart00244	160	PHB prohibitin homologues. prohibitin homologues	99.97
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	99.97
KOG3090	290	consensus Prohibitin-like protein [Posttranslation	99.95
KOG3083	271	consensus Prohibitin [Posttranslational modificati	99.92
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	99.88
KOG2668	428	consensus Flotillins [Intracellular trafficking, s	99.86
KOG2962	322	consensus Prohibitin-related membrane protease sub	99.85
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	99.82
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	99.76
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	99.76
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	99.66
PF13421	211	Band_7_1: SPFH domain-Band 7 family	99.45
PTZ00491	850	major vault protein; Provisional	98.96
COG4260	345	Membrane protease subunit, stomatin/prohibitin fam	98.88
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	97.41
PF12127	316	YdfA_immunity: SigmaW regulon antibacterial; Inter	97.33
PRK13665	316	hypothetical protein; Provisional	97.07
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	96.94
PRK11029	334	FtsH protease regulator HflC; Provisional	96.8
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	96.76
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	96.45
PF11978	118	MVP_shoulder: Shoulder domain; InterPro: IPR021870	96.41
PRK10930	419	FtsH protease regulator HflK; Provisional	96.4
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	96.08
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	94.8
COG1580	159	FliL Flagellar basal body-associated protein [Cell	94.49
KOG2620	301	consensus Prohibitins and stomatins of the PID sup	94.26
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	92.42
COG4864	328	Uncharacterized protein conserved in bacteria [Fun	91.94
TIGR01147	113	V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi	90.34
PRK01558	198	V-type ATP synthase subunit E; Provisional	88.38
PRK06568	154	F0F1 ATP synthase subunit B; Validated	88.22
KOG2668	428	consensus Flotillins [Intracellular trafficking, s	86.91
PRK01558	198	V-type ATP synthase subunit E; Provisional	86.11
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	85.59
PF03748	99	FliL: Flagellar basal body-associated protein FliL	85.0
PRK05697	137	flagellar basal body-associated protein FliL-like	84.99
PRK08404	103	V-type ATP synthase subunit H; Validated	84.55
PRK06654	181	fliL flagellar basal body-associated protein FliL;	84.36
PRK01005	207	V-type ATP synthase subunit E; Provisional	83.74
PRK07718	142	fliL flagellar basal body-associated protein FliL;	82.22
PRK02292	188	V-type ATP synthase subunit E; Provisional	81.62
PRK04057	203	30S ribosomal protein S3Ae; Validated	81.33
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	80.35

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=2e-54  Score=380.88  Aligned_cols=262  Identities=60%  Similarity=0.908  Sum_probs=250.9

Q ss_pred             CCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCCceeecCCcEEEEEEEEEEEEecCchhhhhhhcC
Q 022890           14 QASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQ   93 (290)
Q Consensus        14 ~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~   93 (290)
                      +|++|||++||+++++++||+||++||+ +++...++++.++++++.+++|+|++.|.++++++|||.|+++.+++|++.
T Consensus         1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i-~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~   79 (262)
T cd03407           1 QSQVAIIERFGKFFKVAWPGCHFVIPLV-ETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG   79 (262)
T ss_pred             CcEEEEEeecCcccccCCCCeEEEeccc-cceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence            5899999999999999999999999999 887658999999999988899999999999999999999877779999999


Q ss_pred             ChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHHHHHHHH
Q 022890           94 NPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQ  173 (290)
Q Consensus        94 ~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~Ae~~~  173 (290)
                      ++...|.+.+++++|+++|++++++++++|+.|+..+.+.+++.+++|||.|++|.|++|+||+++.++|++++.|++++
T Consensus        80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~  159 (262)
T cd03407          80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR  159 (262)
T ss_pred             CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHhhc
Q 022890          174 LASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGN  253 (290)
Q Consensus       174 ~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~  253 (290)
                      ++.+.+||++++..+..|++++++.+++|+|+|++.++.|+|+++++..+.+++...++|+++++++.++|+|+++++++
T Consensus       160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~  239 (262)
T cd03407         160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR  239 (262)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998866778899999999999999999999


Q ss_pred             CCCCcEEEecCCCCCcccHHHHHH
Q 022890          254 SSNNTTVFLPHGPGHVRDISDQIR  277 (290)
Q Consensus       254 ~~~~~~v~lp~~~~~~~~~~~~~~  277 (290)
                      ++| |++++|.+.+++.+++.+|+
T Consensus       240 ~~~-kviv~p~~~~~~~~~~~~~~  262 (262)
T cd03407         240 SSS-TVVFRPHGPGGAQDIYAQIR  262 (262)
T ss_pred             CCC-CEEEecCCCccHHHHHHhcC
Confidence            876 99999999999999998873

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=100.00  E-value=7.4e-52  Score=346.04  Aligned_cols=284  Identities=40%  Similarity=0.621  Sum_probs=262.6

Q ss_pred             CCccccceeeeecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEE
Q 022890            1 MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYR   79 (290)
Q Consensus         1 ~g~~~~~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yr   79 (290)
                      ||..+||.-..||+.+++|+.||||++++++||+||++|++ +++.+..+++...+..+. +..|+||+.++++++++||
T Consensus         1 ~g~~~n~vi~~VpQ~~a~VvER~GkF~~iLePG~~fl~p~~-d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~r   79 (301)
T KOG2620|consen    1 MGNATNTVIRFVPQQEAAVVERFGKFHRILEPGLHFLPPVI-DKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYR   79 (301)
T ss_pred             CCCcceeeEEeechhHhHHHHHhhhhhhhcCCcceechhhh-hhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEE
Confidence            68888888223999999999999999999999999999999 788778887776666666 9999999999999999999


Q ss_pred             EecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHH
Q 022890           80 IVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAV  159 (290)
Q Consensus        80 I~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v  159 (290)
                      |.+|...+++|.++||+..|..+++..+|+.++++++|.++..|+.|+..+.+.|++..+.||++|....|+||.||+.+
T Consensus        80 v~dp~~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V  159 (301)
T KOG2620|consen   80 VVDPYADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSV  159 (301)
T ss_pred             EecccccccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHH
Confidence            99755555999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccC----------
Q 022890          160 RKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEG----------  229 (290)
Q Consensus       160 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~----------  229 (290)
                      .++|+.+..|+|.+++++.++|++++..|++||+++++.++..+|.+..+..++.|+++++..++++-+.          
T Consensus       160 ~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~  239 (301)
T KOG2620|consen  160 KRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLK  239 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999987442          


Q ss_pred             -CChHHHHHHHHHHHHHHHHHHhhcCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhhh
Q 022890          230 -ASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQ  287 (290)
Q Consensus       230 -~~~~~~~~~~l~~~~le~l~~~~~~~~~~~v~lp~~~~~~~~~~~~~~~~~~~~~~~~  287 (290)
                       .+.-++..++.+.+|+.++.++++.  ++++|||+++|...+|..|+++++.+.+.+.
T Consensus       240 ~~~g~~aasl~~a~qyIgaf~~lak~--sntv~lP~~pg~v~~mvaQa~~~~~~~s~~~  296 (301)
T KOG2620|consen  240 QEGGVEAASLFDAEQYIGAFGKLAKK--SNTVFLPHGPGDVRDMVAQALNGYKQLSNAT  296 (301)
T ss_pred             HhcchhhHHHHHHHHHHHhhhhhccc--CceEEecCCCCcHHHHHHHHHHHHHhhhccC
Confidence             2355667888999999999999985  6889999999999999999999999988765

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=100.00  E-value=1.3e-47  Score=344.26  Aligned_cols=258  Identities=17%  Similarity=0.254  Sum_probs=234.2

Q ss_pred             cccceeeeecCCcEEEEEEcCcccc-------eeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEE
Q 022890            4 SFCMLCGCIDQASVGIVERWGRFEK-------LAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCS   75 (290)
Q Consensus         4 ~~~~~~~~V~~g~~~Vv~~~Gk~~~-------~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~   75 (290)
                      ++|||  +|++|++|||++||++.+       +++|||||++||+ +++. .+|+|.+.++.+. .++|+|+..|.++++
T Consensus        17 ~~s~~--iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfi-d~V~-~vdvR~q~~d~~~~~vlT~D~~~V~VD~~   92 (334)
T PRK11029         17 YMSVF--VVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFI-ETVK-MLDARIQTMDNQADRFVTKEKKDLIVDSY   92 (334)
T ss_pred             HheEE--EECCCeEEEEEECCceeccccccccccCCceEEEcCCc-eEEE-EEeeEEEEeeCCCceEEcCCCCEEEEEEE
Confidence            56888  999999999999999986       4899999999999 8986 8999999999986 899999999999999


Q ss_pred             EEEEEecCchhhhhhhc--CC---hHHHHHHHHHHHHHHhccCCCHHHHHhh-HHHHHHHHHHHHHHH------------
Q 022890           76 IQYRIVRANADDAFYEL--QN---PKEQIQAYVFDVVRALVPRMTLDELFEQ-KGEVAKAVLEELEKV------------  137 (290)
Q Consensus        76 v~yrI~~~~~~~~~~~~--~~---~~~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~------------  137 (290)
                      ++|||.|  |.++++.+  .|   +...|++.+++++|+++|++++++++++ |++|..++++.+++.            
T Consensus        93 V~yrI~D--p~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~  170 (334)
T PRK11029         93 IKWRISD--FSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPA  170 (334)
T ss_pred             EEEEECC--HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccc
Confidence            9999985  77777654  23   3578899999999999999999999985 999999999999964            


Q ss_pred             ---------------------------hhccCeEEEEEEeecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022890          138 ---------------------------MGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKR  190 (290)
Q Consensus       138 ---------------------------l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~  190 (290)
                                                 +.+|||+|.+|.|++++||+++.++|++++.|+|++++.+.+||+++.+...+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~  250 (334)
T PRK11029        171 ADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLR  250 (334)
T ss_pred             cccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       47899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHhhcCCCCcEEEecCCCCCcc
Q 022890          191 AEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVR  270 (290)
Q Consensus       191 Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~~v~lp~~~~~~~  270 (290)
                      ++++.++.++.|+|++++..++|+|++++++.+++++.  .+|+   ++.+++||++++++++++ +++++||.++    
T Consensus       251 a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~--~~p~---~~~~~~~lea~~~~~~~~-~~~~vl~~~~----  320 (334)
T PRK11029        251 ATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFS--QDPD---FYAFIRSLRAYENSFSGN-QDVMVLSPDS----  320 (334)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCHH---HHHHHHHHHHHHHHhcCC-CcEEEECCCh----
Confidence            99999999999999999999999999999999999986  4676   667789999999999864 4789999885    


Q ss_pred             cHHHHHH
Q 022890          271 DISDQIR  277 (290)
Q Consensus       271 ~~~~~~~  277 (290)
                      ++|..|.
T Consensus       321 ~~~~~l~  327 (334)
T PRK11029        321 DFFRYMK  327 (334)
T ss_pred             HHHHHhh
Confidence            7777774

>TIGR01933 hflK HflK protein

Probab=100.00  E-value=2e-46  Score=330.32  Aligned_cols=248  Identities=17%  Similarity=0.293  Sum_probs=226.9

Q ss_pred             ceeeeecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCch
Q 022890            7 MLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANA   85 (290)
Q Consensus         7 ~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~   85 (290)
                      +|  +|++|++||+++||++.++++||+||++||+ +++. .+|++.+....+. .++|+|+..|.++++++|||.|  |
T Consensus         1 ~~--iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~i-~~v~-~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d--~   74 (261)
T TIGR01933         1 IY--TIGEAERGVVLRFGKYHRTVDPGLNWKPPFI-EEVY-PVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITD--P   74 (261)
T ss_pred             CE--EeCCCeEEEEEEcCccccccCCcceEECCCc-eEEE-EeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECC--H
Confidence            57  9999999999999999999999999999999 8885 8998764422222 6899999999999999999985  7


Q ss_pred             hhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHh-hHHHHHHHHHHHHHHHhhcc--CeEEEEEEeecCCCChHHHHH
Q 022890           86 DDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFE-QKGEVAKAVLEELEKVMGAY--GYSIEHILMVDIIPDPAVRKA  162 (290)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~-~R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~v~~a  162 (290)
                      .++++++.+++..|.+.+++++|+++++++++++++ +|++|.+.+.+.+++.++.|  ||+|.+|.|++|+||+++.++
T Consensus        75 ~~~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a  154 (261)
T TIGR01933        75 YKYLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEA  154 (261)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHH
Confidence            889999999999999999999999999999999999 69999999999999999976  999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHH
Q 022890          163 MNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMIT  242 (290)
Q Consensus       163 i~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~  242 (290)
                      |++++.|++++++.+.+|+++++..+.+|+++|++.+++|+|++++..+.|+|+++++..+++++.  .+|+++   .++
T Consensus       155 ~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~--~~p~~~---~~~  229 (261)
T TIGR01933       155 FDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYK--KAPDVT---RER  229 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hChHHH---HHH
Confidence            999999999999999999999999999999999999999999999999999999999999999875  468755   457


Q ss_pred             HHHHHHHHhhcCCCCcEEEecCCC
Q 022890          243 QYFDTIKDLGNSSNNTTVFLPHGP  266 (290)
Q Consensus       243 ~~le~l~~~~~~~~~~~v~lp~~~  266 (290)
                      +|+|++++++++ ++++++++.++
T Consensus       230 ~~le~~~~~~~~-~~~~~~~~~~~  252 (261)
T TIGR01933       230 LYLETMEKVLSN-TRKVLLDDKKG  252 (261)
T ss_pred             HHHHHHHHHHcc-CCeEEEECCCC
Confidence            899999999964 46788887765

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=100.00  E-value=1.7e-46  Score=345.56  Aligned_cols=248  Identities=18%  Similarity=0.276  Sum_probs=226.3

Q ss_pred             cccceeeeecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeC-CceeecCCcEEEEEEEEEEEEec
Q 022890            4 SFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVR-IETKTKDNVFVQLLCSIQYRIVR   82 (290)
Q Consensus         4 ~~~~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~-~~v~T~D~~~v~v~~~v~yrI~~   82 (290)
                      ++|||  +|+++|+|||++||++.++++||+||++||+ +++. .++++.+..... ..++|+|++.|.|+++|+|||.|
T Consensus        94 ~sg~y--iV~e~E~gVV~rFGk~~~~l~PGLhfk~PfI-d~V~-~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~D  169 (419)
T PRK10930         94 ASGFY--TIKEAERGVVTRFGKFSHLVEPGLNWKPTFI-DEVK-PVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTD  169 (419)
T ss_pred             HheEE--EECCCeEEEEEECCcCcceeCCceEEecCce-EEEE-EEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECC
Confidence            57899  9999999999999999999999999999999 8986 788877654433 38999999999999999999984


Q ss_pred             CchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEeecCCCChHH
Q 022890           83 ANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ-KGEVAKAVLEELEKVMGAY--GYSIEHILMVDIIPDPAV  159 (290)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~v  159 (290)
                        |.+++|++.+++..|++.++++||+++++++++++++. |++|..++++.|++.++.|  ||+|.+|.|++++||+++
T Consensus       170 --p~~~lf~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV  247 (419)
T PRK10930        170 --PEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEV  247 (419)
T ss_pred             --HHHHHHhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHH
Confidence              88999999999999999999999999999999999997 9999999999999999997  999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHH
Q 022890          160 RKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLI  239 (290)
Q Consensus       160 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~  239 (290)
                      .++|++++.|++++++.+.+||++++..+.+|+++|++.+.+|+|++++..+.|+|+++++..+..+|.  ++|++++. 
T Consensus       248 ~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~--kaP~vtr~-  324 (419)
T PRK10930        248 KAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYK--AAPEITRE-  324 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh--hCHHHHHH-
Confidence            999999999999999999999999999999999999999999999999999999999998777777654  68988765 


Q ss_pred             HHHHHHHHHHHhhcCCCCcEEEecC
Q 022890          240 MITQYFDTIKDLGNSSNNTTVFLPH  264 (290)
Q Consensus       240 l~~~~le~l~~~~~~~~~~~v~lp~  264 (290)
                        ..|||+|++++.+  .+.|++..
T Consensus       325 --RlYletme~vl~~--~~kvivd~  345 (419)
T PRK10930        325 --RLYIETMEKVLGH--TRKVLVND  345 (419)
T ss_pred             --HHHHHHHHHHHcc--CCEEEEeC
Confidence              4699999999984  23345544

>TIGR01932 hflC HflC protein

Probab=100.00  E-value=3.7e-46  Score=335.80  Aligned_cols=257  Identities=17%  Similarity=0.222  Sum_probs=230.8

Q ss_pred             ccccceeeeecCCcEEEEEEcCccccee-------CCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEE
Q 022890            3 NSFCMLCGCIDQASVGIVERWGRFEKLA-------EPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLC   74 (290)
Q Consensus         3 ~~~~~~~~~V~~g~~~Vv~~~Gk~~~~l-------~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~   74 (290)
                      .++|||  +|++|++||+++||++.++.       +||+||++||+ +++. .+|++.++++.+. .++|+|+++|.+++
T Consensus        16 l~~~~~--iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i-~~v~-~vd~r~q~~~~~~~~vlTkD~~~V~Vd~   91 (317)
T TIGR01932        16 LFQPFF--IIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFI-EHVK-IFDAKIQTMDGRPDRIPTKEKKDIIIDT   91 (317)
T ss_pred             HHheEE--EECCCeEEEEEecCceeccccccccccCCCeEEEeccc-cEEE-EeeeeEEEecCCcceeECCCCCEEEEEE
Confidence            357888  99999999999999997654       79999999999 8986 8999999999876 99999999999999


Q ss_pred             EEEEEEecCchhhhhhhcC--C---hHHHHHHHHHHHHHHhccCCCHHHHHhh-HHHH----------------------
Q 022890           75 SIQYRIVRANADDAFYELQ--N---PKEQIQAYVFDVVRALVPRMTLDELFEQ-KGEV----------------------  126 (290)
Q Consensus        75 ~v~yrI~~~~~~~~~~~~~--~---~~~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i----------------------  126 (290)
                      +++|||.+  +.++++.++  +   ++..|.+.+++++|+++|++++++++++ |++|                      
T Consensus        92 ~V~yrV~d--~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~  169 (317)
T TIGR01932        92 YIRWRIED--FKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTI  169 (317)
T ss_pred             EEEEEECC--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhcccccccccccccc
Confidence            99999984  778888765  3   4678999999999999999999999987 6665                      


Q ss_pred             -------HHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022890          127 -------AKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKY  199 (290)
Q Consensus       127 -------~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~  199 (290)
                             ...+.+.+...+.+|||+|++|.|++++||+++.++|.+++.|+|++++...++++++.+....+++++++.+
T Consensus       170 ~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~  249 (317)
T TIGR01932       170 TKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRK  249 (317)
T ss_pred             chhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   5678888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHhhcCCCCcEEEecCCCCCcccHHHH
Q 022890          200 LGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQ  275 (290)
Q Consensus       200 ~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~~v~lp~~~~~~~~~~~~  275 (290)
                      +.|+|++++..++|+|++++++.+++++.  .+|+..+   +++|||++++++++ ++++++||.++    ++|..
T Consensus       250 ~~aeA~a~a~~~~Aegea~a~~~~~~a~~--~~p~~~~---~~~~le~~~~~~~~-~~~~~vl~~~~----~~~~~  315 (317)
T TIGR01932       250 ILSEAYRTARIIKGEGDAEAAKIYSDAYG--KDPEFYS---FWRSLEAYEKSFKD-NQDEKVLSTDS----EFFQY  315 (317)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHc--cCHHHHH---HHHHHHHHHHHhCC-CCCEEEECCCc----HHHHh
Confidence            99999999999999999999999999986  4787544   57999999999986 46789999885    66654

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=1.5e-45  Score=321.45  Aligned_cols=234  Identities=19%  Similarity=0.270  Sum_probs=217.7

Q ss_pred             ceeeeecCCcEEEEEEcCcccc-eeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCc
Q 022890            7 MLCGCIDQASVGIVERWGRFEK-LAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRAN   84 (290)
Q Consensus         7 ~~~~~V~~g~~~Vv~~~Gk~~~-~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~   84 (290)
                      ||  +|++|++||+++||++.+ +++||+||++||+ +++. .+|++.+.++.+. .++|+|++++++++++.|||.|  
T Consensus         1 ~~--iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i-~~v~-~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d--   74 (242)
T cd03405           1 LF--IVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFI-QQVK-KFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITD--   74 (242)
T ss_pred             CE--EeCCCeEEEEEEcCccccccCCCCeeEEcCCc-ceEE-EEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcC--
Confidence            57  999999999999999987 6899999999999 8875 8999999998766 8999999999999999999985  


Q ss_pred             hhhhhhhcCChH----HHHHHHHHHHHHHhccCCCHHHHHhh-HHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHH
Q 022890           85 ADDAFYELQNPK----EQIQAYVFDVVRALVPRMTLDELFEQ-KGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAV  159 (290)
Q Consensus        85 ~~~~~~~~~~~~----~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v  159 (290)
                      |.++++.+.++.    ..|.+.+++++|++++++++++++++ |++|.+.+.+.|++.+++|||+|.+|.|++|+||+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i  154 (242)
T cd03405          75 PLRFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEV  154 (242)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHH
Confidence            678888877653    78999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHH
Q 022890          160 RKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLI  239 (290)
Q Consensus       160 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~  239 (290)
                      .++|++++.|+|++.+++.+|++++.+.+..|++++++.++.|+|+|++..++|+|++++++.+++++.  .+|+++   
T Consensus       155 ~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~--~~p~~~---  229 (242)
T cd03405         155 SESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYG--KDPEFY---  229 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--CCHHHH---
Confidence            999999999999999999999999999999999999999999999999999999999999999999986  478755   


Q ss_pred             HHHHHHHHHHHh
Q 022890          240 MITQYFDTIKDL  251 (290)
Q Consensus       240 l~~~~le~l~~~  251 (290)
                      .++++|++|+..
T Consensus       230 ~~~~~l~~~~~~  241 (242)
T cd03405         230 AFYRSLEAYRNS  241 (242)
T ss_pred             HHHHHHHHHHhh
Confidence            457899999865

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=4.6e-44  Score=316.14  Aligned_cols=239  Identities=23%  Similarity=0.328  Sum_probs=215.9

Q ss_pred             cccceeeeecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEE----------Eee-e-C-CceeecCCcEE
Q 022890            4 SFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRIN----------SLD-V-R-IETKTKDNVFV   70 (290)
Q Consensus         4 ~~~~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~----------~~~-~-~-~~v~T~D~~~v   70 (290)
                      ++||+  +|++|++|||++||+++++++||+||++||+ +++...++++.+          ... . + ..++|+||..|
T Consensus        12 ~~s~~--~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v   88 (266)
T cd03404          12 LSGFY--IVQPGERGVVLRFGKYSRTVEPGLHWKLPYP-IEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIV   88 (266)
T ss_pred             HcEEE--EECCCceEEeEEcCccccccCCceeEecCCC-cEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEE
Confidence            56888  9999999999999999999999999999999 776545544321          111 1 1 27899999999


Q ss_pred             EEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh-HHHHHHHHHHHHHHHhhcc--CeEEEE
Q 022890           71 QLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ-KGEVAKAVLEELEKVMGAY--GYSIEH  147 (290)
Q Consensus        71 ~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~  147 (290)
                      .+++++.|||.|  |.++++.+.+++..|.+.+++++|++++++++++++++ |++|.+.+++.+++.++.|  ||+|.+
T Consensus        89 ~vd~~v~yrI~d--~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~  166 (266)
T cd03404          89 DVEFAVQYRISD--PYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVG  166 (266)
T ss_pred             EEEEEEEEEECC--HHHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence            999999999995  67888999999999999999999999999999999998 9999999999999999977  999999


Q ss_pred             EEeecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 022890          148 ILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKV  227 (290)
Q Consensus       148 v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~  227 (290)
                      |.|++++||+++.++|++++.|++++++.+.+|+++++..+..|+++|++.+++|+|++++..+.|+|+++++..+++++
T Consensus       167 v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~  246 (266)
T cd03404         167 VNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEY  246 (266)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHhh
Q 022890          228 EGASAKEVMDLIMITQYFDTIKDLG  252 (290)
Q Consensus       228 ~~~~~~~~~~~~l~~~~le~l~~~~  252 (290)
                      .  ++|+++   +.+.|++++++++
T Consensus       247 ~--~~~~~~---~~~~~~~~~~~~~  266 (266)
T cd03404         247 K--KAPDVT---RERLYLETMEEVL  266 (266)
T ss_pred             h--hChHHH---HHHHHHHHHHHhC
Confidence            6  467754   4567999999864

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-40  Score=296.36  Aligned_cols=256  Identities=26%  Similarity=0.417  Sum_probs=232.5

Q ss_pred             cccceeeeecCCcEEEEEEcCcccceeC-Ccceeeccc---cceeEEEeeeeeEEEeee-CC-ceeecCCcEEEEEEEEE
Q 022890            4 SFCMLCGCIDQASVGIVERWGRFEKLAE-PGLHFFNPC---AGQWLAGILSTRINSLDV-RI-ETKTKDNVFVQLLCSIQ   77 (290)
Q Consensus         4 ~~~~~~~~V~~g~~~Vv~~~Gk~~~~l~-pG~~~~~P~---~~~~v~~~~~~r~~~~~~-~~-~v~T~D~~~v~v~~~v~   77 (290)
                      +++++  +|++++.+++++||++.++++ ||+||++||   + ......++.+.++++. +. .+.|+|+..|.+|++++
T Consensus        18 ~~~~~--~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~-~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~   94 (291)
T COG0330          18 FSSIF--VVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAI-EEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQ   94 (291)
T ss_pred             HceeE--EEcCCceEEEEEecceeeecCCCceEEEcCCccce-eeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEE
Confidence            56788  999999999999999999998 999999999   5 4554578899999999 55 99999999999999999


Q ss_pred             EEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHH-HHHHHHHHHHHHHhhccCeEEEEEEeecCCCC
Q 022890           78 YRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKG-EVAKAVLEELEKVMGAYGYSIEHILMVDIIPD  156 (290)
Q Consensus        78 yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~-~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p  156 (290)
                      |||.|  +.++++.+.+++..|.+.+++.+|++++++++++++++|. .+...+.+.|++.+++|||.|.+|.|++++||
T Consensus        95 ~rv~d--~~~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p  172 (291)
T COG0330          95 YRVTD--PQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPP  172 (291)
T ss_pred             EEEcC--HHHHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCC
Confidence            99996  7799999999999999999999999999999999999977 99999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHH
Q 022890          157 PAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVM  236 (290)
Q Consensus       157 ~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~  236 (290)
                      +++..+|.+++.|++++++.+.+|+++++..+.+|+|++++.++.++|++++ +..++|++++.+.+++++..   .+..
T Consensus       173 ~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~~~~~---~~~~  248 (291)
T COG0330         173 EEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAAALRE---APAA  248 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHHHHHhhccc---ccch
Confidence            9999999999999999999999999999999999999999999999999988 66677777777888887653   2234


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCcEEEecCCCCC
Q 022890          237 DLIMITQYFDTIKDLGNSSNNTTVFLPHGPGH  268 (290)
Q Consensus       237 ~~~l~~~~le~l~~~~~~~~~~~v~lp~~~~~  268 (290)
                      .+++.++|++.+.+...+++++++++|.+.++
T Consensus       249 ~~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~  280 (291)
T COG0330         249 PQALAQRYLEELLEIALAGNSKVVVVPNSAGG  280 (291)
T ss_pred             hHHHHHHHHHHHHHHhhCCCCeEEEecCCccc
Confidence            57788999999999999888899999988644

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=100.00  E-value=4.9e-40  Score=281.72  Aligned_cols=213  Identities=28%  Similarity=0.443  Sum_probs=182.9

Q ss_pred             ecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhh
Q 022890           12 IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFY   90 (290)
Q Consensus        12 V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~   90 (290)
                      |++|++||+++||++.++++||+||++||+ +++.+.+|++.++++++. .++|+|++++.+++++.|||.+  |.++++
T Consensus         1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~~-~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d--~~~~~~   77 (215)
T cd03403           1 VPQYERGVVERLGKYHRTLGPGLHFIIPFI-DRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVD--PVKAVY   77 (215)
T ss_pred             CCcceEEEEEEcCcCccccCCcEEEEeccc-eEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEec--HHHHHh
Confidence            689999999999999999999999999999 888349999999999977 7999999999999999999984  778888


Q ss_pred             hcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHHHHH
Q 022890           91 ELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQ  170 (290)
Q Consensus        91 ~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~Ae  170 (290)
                      .+.+++..|.+.+++++|++++++++++++++|+.|.+.+++.|++.+.+|||+|++|.|++|+||+++.++|++++.|+
T Consensus        78 ~~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~  157 (215)
T cd03403          78 GVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAE  157 (215)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHH
Q 022890          171 RLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKD  250 (290)
Q Consensus       171 ~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~  250 (290)
                      +++++.+.+|++++++.+..|+++++..                                .++    ..+.++++|+++.
T Consensus       158 ~~~~a~i~~A~ge~~a~~~~aea~~~~~--------------------------------~~~----~~~~~~~~e~~~~  201 (215)
T cd03403         158 REKRAKIIEAEGERQAAILLAEAAKQAA--------------------------------INP----AALQLRELETLEE  201 (215)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHc--------------------------------cCH----HHHHHHHHHHHHH
Confidence            8777655555555444333333333221                                123    3456799999999


Q ss_pred             hhcCCCCcEEEec
Q 022890          251 LGNSSNNTTVFLP  263 (290)
Q Consensus       251 ~~~~~~~~~v~lp  263 (290)
                      ++++.+.++++.|
T Consensus       202 ~~~~~~~~~~~~~  214 (215)
T cd03403         202 IAKEAASTVVFPA  214 (215)
T ss_pred             HHhccCCeEEeeC
Confidence            9999876655544

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=100.00  E-value=2.3e-37  Score=261.55  Aligned_cols=191  Identities=21%  Similarity=0.292  Sum_probs=165.6

Q ss_pred             cceeeeecCCcEEEEEEcCcccc--eeCCcceeeccccceeEEEeeeeeEEEeeeCCceeecCCcEEEEEEEEEEEEecC
Q 022890            6 CMLCGCIDQASVGIVERWGRFEK--LAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRA   83 (290)
Q Consensus         6 ~~~~~~V~~g~~~Vv~~~Gk~~~--~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~~   83 (290)
                      |||  +|++|++||+++||+...  +++||+||++||+ +++. .+|++.+.+++...+.|+|++.|++++.+.|++.++
T Consensus         1 ~~~--~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~-~~v~-~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~   76 (196)
T cd03401           1 SLY--NVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWF-QKPI-IFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDAS   76 (196)
T ss_pred             CEE--EECCCcEEEEEEecCccccCccCCceEEEcccc-ceeE-EEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHH
Confidence            578  999999999999998754  8999999999999 8886 999999999888888999999999999999999865


Q ss_pred             chhhhhhhcC-C-hHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHH
Q 022890           84 NADDAFYELQ-N-PKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRK  161 (290)
Q Consensus        84 ~~~~~~~~~~-~-~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~  161 (290)
                      ++..++..++ + .+..|.+.+++++|+++++|+++|++++|++|++.+.+.+++.+.+|||.|++|.|++|+||+++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~  156 (196)
T cd03401          77 QLPRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTK  156 (196)
T ss_pred             HHHHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHH
Confidence            5555544443 3 3568999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHH
Q 022890          162 AMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQ  208 (290)
Q Consensus       162 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a  208 (290)
                      +|++++.|+++.+++.        ..+.+|+++|++.+++|+|+|++
T Consensus       157 ai~~k~~a~q~~~~a~--------~~~~~a~~ea~~~~~~A~gea~a  195 (196)
T cd03401         157 AVEAKQVAQQEAERAK--------FVVEKAEQEKQAAVIRAEGEAEA  195 (196)
T ss_pred             HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhhhc
Confidence            9999999998766522        23456777777777777777654

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=5.8e-37  Score=269.16  Aligned_cols=193  Identities=18%  Similarity=0.231  Sum_probs=171.7

Q ss_pred             cccceeeeecCCcEEEEEEcCccc-ceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEE-EEEEEE
Q 022890            4 SFCMLCGCIDQASVGIVERWGRFE-KLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLC-SIQYRI   80 (290)
Q Consensus         4 ~~~~~~~~V~~g~~~Vv~~~Gk~~-~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~-~v~yrI   80 (290)
                      ++|+|  +|++|++||++|||++. .+++|||||++||+ +++. .++++.++++.+. .+.|+||+.|.++. .+.|++
T Consensus         2 ~ssv~--iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfI-d~V~-~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~iv   77 (280)
T cd03406           2 SSALH--KIEEGHVGVYYRGGALLTSTSGPGFHLMLPFI-TTYK-SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFL   77 (280)
T ss_pred             CceEE--EECCCeEEEEEECCcccccccCCceEEecCCc-eEEE-EEEeEEEEeccCCcccccCCCcEEEEEEEEEEEec
Confidence            57899  99999999999999985 57899999999999 8886 7999999988764 88999999999995 566776


Q ss_pred             ecCchhhhh--hhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEeecCCC
Q 022890           81 VRANADDAF--YELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ-KGEVAKAVLEELEKVMGAY--GYSIEHILMVDIIP  155 (290)
Q Consensus        81 ~~~~~~~~~--~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~  155 (290)
                      ++..++..+  |...+....|.+.+++++|+++|++++++++++ |+.+...+++.+++.++.|  ||+|.+|.|++++|
T Consensus        78 dp~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~  157 (280)
T cd03406          78 IPDSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKI  157 (280)
T ss_pred             CHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCC
Confidence            654444444  344567889999999999999999999999995 9999999999999999988  99999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 022890          156 DPAVRKAMNEINAAQRLQL--------ASVYKGEAEKILQVKRAEAEAEAKYLG  201 (290)
Q Consensus       156 p~~v~~ai~~~~~Ae~~~~--------a~~~~Ae~~~~~~i~~Aeaeae~~~~~  201 (290)
                      |+++.++| ++|.|||++.        +.+.+||+++...+..|+++|+-.++.
T Consensus       158 P~~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~  210 (280)
T cd03406         158 PEAIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKIL  210 (280)
T ss_pred             CHHHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHH
Confidence            99999998 7999999999        999999999999999999999876553

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=3.8e-35  Score=250.64  Aligned_cols=171  Identities=15%  Similarity=0.283  Sum_probs=159.0

Q ss_pred             cceeeeecCCcEEEEEEcCccccee-CCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecC
Q 022890            6 CMLCGCIDQASVGIVERWGRFEKLA-EPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRA   83 (290)
Q Consensus         6 ~~~~~~V~~g~~~Vv~~~Gk~~~~l-~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~   83 (290)
                      |+|  +|+||+.||+++||++.++. +|||||++||+ +. . ++|+|.++++.+. .+.|+|+.++.+++.+.|||.| 
T Consensus         1 g~~--iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~-~~-~-~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~D-   74 (219)
T cd03402           1 GLF--VVEPNQARVLVLFGRYIGTIRRTGLRWVNPFS-SK-K-RVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVD-   74 (219)
T ss_pred             CeE--EECCCeeEEEEEcCcCcccccCCceEEEeccc-eE-E-EEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcC-
Confidence            588  99999999999999999875 99999999999 65 3 7999999999888 7999999999999999999994 


Q ss_pred             chhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHh-------hHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCC
Q 022890           84 NADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFE-------QKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPD  156 (290)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~-------~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p  156 (290)
                       |.+++|++.|++..|...+++++|+++++++++++++       +|+++.+++++.+++.++.|||+|.++.|+++.||
T Consensus        75 -p~ka~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p  153 (219)
T cd03402          75 -TAKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYA  153 (219)
T ss_pred             -HHHHHHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCC
Confidence             8899999999999999999999999999999999986       47999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022890          157 PAVRKAMNEINAAQRLQLASVYKGEAE  183 (290)
Q Consensus       157 ~~v~~ai~~~~~Ae~~~~a~~~~Ae~~  183 (290)
                      +++.++|.++++|++++.+....+++.
T Consensus       154 ~ei~~am~~R~~Ae~~~~Ar~~~~~Ga  180 (219)
T cd03402         154 PEIAQAMLQRQQASAIIAARRKIVEGA  180 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999888776666553

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=100.00  E-value=4.2e-35  Score=248.42  Aligned_cols=220  Identities=21%  Similarity=0.349  Sum_probs=183.6

Q ss_pred             ccee-eeecCCcEEEEEEcCcccc--eeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEe
Q 022890            6 CMLC-GCIDQASVGIVERWGRFEK--LAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIV   81 (290)
Q Consensus         6 ~~~~-~~V~~g~~~Vv~~~Gk~~~--~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~   81 (290)
                      .|+| ++|++.|++|++|+|++..  ..|||+.|++||+ |+.. ++|+|++.+++|+ +++|||.+.++|++.++|||.
T Consensus        51 ~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCI-Dt~~-kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~  128 (288)
T KOG2621|consen   51 IWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCI-DTFR-KVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRIS  128 (288)
T ss_pred             HHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEeccc-ceee-eeeeeEEeecCCHHHHhcccceEEEeceEEEEEec
Confidence            3444 5999999999999999975  7799999999999 8886 9999999999999 999999999999999999999


Q ss_pred             cCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHH
Q 022890           82 RANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRK  161 (290)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~  161 (290)
                      +  |...+.+++|.....+-++++.||+++++.++.|++++|+.|+.++...|.+....|||+|++|+|+||++|.+.++
T Consensus       129 d--pi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqr  206 (288)
T KOG2621|consen  129 D--PIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQR  206 (288)
T ss_pred             C--HHHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhh
Confidence            4  88999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 022890          162 AMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMI  241 (290)
Q Consensus       162 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~  241 (290)
                      ++.....|.++..+++..||+++.+                      -    ++++++...+      ..+|.+.    +
T Consensus       207 amaaeAeA~reA~Akviaaege~~a----------------------s----~al~~aa~v~------~~sp~al----q  250 (288)
T KOG2621|consen  207 AMAAEAEATREARAKVIAAEGEKKA----------------------S----EALKEAADVI------SESPIAL----Q  250 (288)
T ss_pred             hhhchhhhhhhhhhhHHHHHhhhHH----------------------H----HHHHHhhccc------cCCchhh----h
Confidence            8876665555555544444444322                      1    2222221111      2366554    4


Q ss_pred             HHHHHHHHHhhcCCCCcEEEecCCC
Q 022890          242 TQYFDTIKDLGNSSNNTTVFLPHGP  266 (290)
Q Consensus       242 ~~~le~l~~~~~~~~~~~v~lp~~~  266 (290)
                      .|||+++..++.. .+++++.|...
T Consensus       251 LryLqtl~sia~e-~~~tivfP~p~  274 (288)
T KOG2621|consen  251 LRYLQTLNSIAAE-KNSTIVFPLPI  274 (288)
T ss_pred             hhhhhcchhhhcC-CCCCcccCCCH
Confidence            6999999999876 46778888764

>smart00244 PHB prohibitin homologues

Probab=99.97  E-value=1.3e-30  Score=212.72  Aligned_cols=156  Identities=28%  Similarity=0.474  Sum_probs=146.4

Q ss_pred             ccceeeeecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecC
Q 022890            5 FCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRA   83 (290)
Q Consensus         5 ~~~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~   83 (290)
                      +|||  +|++|++||+++||++.++++||+||++||+ +++. .++++.++++.+. .+.|+|++++.+++++.|||.+ 
T Consensus         1 ~~~~--~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~~-~~~~-~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d-   75 (160)
T smart00244        1 AAIK--VVGEGEAGVVERLGRVLRVLGPGLHFLIPFI-DRVK-KVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLD-   75 (160)
T ss_pred             CcEE--EEcccEEEEEEecCccccccCCCEEEEecce-eEEE-EEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEcc-
Confidence            4788  9999999999999999999999999999999 8886 8999999998877 8999999999999999999985 


Q ss_pred             chhhhhhhcCChH-HHHHHHHHHHHHHhccCCCHHHHHh-hHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHH
Q 022890           84 NADDAFYELQNPK-EQIQAYVFDVVRALVPRMTLDELFE-QKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRK  161 (290)
Q Consensus        84 ~~~~~~~~~~~~~-~~l~~~~~~~lr~~i~~~~~~~i~~-~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~  161 (290)
                       +.++++...+++ ..|++.+++++|+++++++++++++ .|+++.+.+.+.+++.+++||++|.+|.|+++++|+++.+
T Consensus        76 -~~~~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~  154 (160)
T smart00244       76 -PLKAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQE  154 (160)
T ss_pred             -HHHHhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHH
Confidence             667888888887 5999999999999999999999999 5999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 022890          162 AMNEI  166 (290)
Q Consensus       162 ai~~~  166 (290)
                      +|+++
T Consensus       155 ai~~k  159 (160)
T smart00244      155 AMEQQ  159 (160)
T ss_pred             HHHhh
Confidence            99865

prohibitin homologues

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=99.97  E-value=2e-31  Score=221.34  Aligned_cols=169  Identities=27%  Similarity=0.512  Sum_probs=119.3

Q ss_pred             eecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC---ceeecCCcEEEEEEEEEEEEecCchhh
Q 022890           11 CIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI---ETKTKDNVFVQLLCSIQYRIVRANADD   87 (290)
Q Consensus        11 ~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~---~v~T~D~~~v~v~~~v~yrI~~~~~~~   87 (290)
                      +|++|++||++++|++..+++||+||++||+ +++. .+|++.++++++.   .+.|+|+.++.+++++.|||.  ++..
T Consensus         2 ~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~~-~~~~-~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~--~~~~   77 (179)
T PF01145_consen    2 TVPPGEVGVVVRFGKVKDVLGPGLHFVIPFI-QKVY-VYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIE--DPPK   77 (179)
T ss_dssp             ------------------------------E-EE---S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES---CCC
T ss_pred             EeCCCEEEEEEECCeEeEEECCCeEEEeCCc-CeEE-EEeCEEEecccchhhhhhhhcccceeeeeEEEEEEec--hHHH
Confidence            8999999999999999999999999999998 8886 9999999999998   999999999999999999995  4677


Q ss_pred             hhhhc----CChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHH
Q 022890           88 AFYEL----QNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAM  163 (290)
Q Consensus        88 ~~~~~----~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai  163 (290)
                      ++..+    .+++..|++.+++++|++++++++++++++|.++.+.+.+.|++.+.+|||+|.+|.|.++++|+++.+++
T Consensus        78 ~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i  157 (179)
T PF01145_consen   78 FVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAI  157 (179)
T ss_dssp             CCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHH
T ss_pred             HHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHH
Confidence            77777    67899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHH
Q 022890          164 NEINAAQRLQ-LASVYKGEAE  183 (290)
Q Consensus       164 ~~~~~Ae~~~-~a~~~~Ae~~  183 (290)
                      .++..|++++ ++++.+|+++
T Consensus       158 ~~~~~a~~~~~~~~~~~a~~e  178 (179)
T PF01145_consen  158 EEKQRAEQEAQQAEIERAEAE  178 (179)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            9999999888 5555555544

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2e-26  Score=189.21  Aligned_cols=235  Identities=16%  Similarity=0.266  Sum_probs=196.6

Q ss_pred             ccccceeeeecCCcEEEEE-EcCccc-ceeCCcceeeccccceeEEEeeeeeEEEeeeCCceeecCCcEEEEEEEEEEEE
Q 022890            3 NSFCMLCGCIDQASVGIVE-RWGRFE-KLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRI   80 (290)
Q Consensus         3 ~~~~~~~~~V~~g~~~Vv~-~~Gk~~-~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI   80 (290)
                      .-.++|  .|+-||+++++ |+|.++ +++..|+||.+||+ ++-. .+|.|-+...+....-|+|-+.|++...|.-|-
T Consensus        34 v~~sl~--nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwf-e~pI-iYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP  109 (290)
T KOG3090|consen   34 VTQSLY--NVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWF-ERPI-IYDVRARPRLISSPTGSKDLQMVNIGLRVLSRP  109 (290)
T ss_pred             ecceeE--eecCCceEEEEeccccchhccccCCceEeeecc-ccce-eeeeccCcccccCCCCCcceeEEEeeeEEecCC
Confidence            345678  99999999987 677775 68899999999999 8876 899999999999999999999999999999888


Q ss_pred             ecCchhhhhhhcC-Ch-HHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChH
Q 022890           81 VRANADDAFYELQ-NP-KEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPA  158 (290)
Q Consensus        81 ~~~~~~~~~~~~~-~~-~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~  158 (290)
                      .....+..+...+ || +..|-.++...|++++++++..++++.|+.++-.+++.|.++..++.|.+++|.|+++.|.++
T Consensus       110 ~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~e  189 (290)
T KOG3090|consen  110 MADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKE  189 (290)
T ss_pred             ChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHH
Confidence            7656666665554 56 577888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHH
Q 022890          159 VRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDL  238 (290)
Q Consensus       159 v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~  238 (290)
                      +..+++.++.|.|+.+.+.        -.+.+|+.|.+..+++|+|||++-+.+++|.+.             +|..   
T Consensus       190 fTaAiEaKQvA~QeAqRA~--------F~VekA~qek~~~ivrAqGEaksAqliGeAi~n-------------n~~f---  245 (290)
T KOG3090|consen  190 FTAAIEAKQVAAQEAQRAK--------FIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKN-------------NPAF---  245 (290)
T ss_pred             HHHHHHHHHHHHHHHhhhh--------hhhHHHHHhhhhhhhhhccchHHHHHHHHHHhC-------------Cccc---
Confidence            9999999999999877533        345677778888888888888888888877653             5543   


Q ss_pred             HHHHHHHHHHHHhhc--CCCCcEEEecCCC
Q 022890          239 IMITQYFDTIKDLGN--SSNNTTVFLPHGP  266 (290)
Q Consensus       239 ~l~~~~le~l~~~~~--~~~~~~v~lp~~~  266 (290)
                       +..|-+++-+++++  +.+.|.|||+++.
T Consensus       246 -i~Lrki~aAr~IA~tia~S~NkvyL~~~~  274 (290)
T KOG3090|consen  246 -ITLRKIEAAREIAQTIASSANKVYLSSDD  274 (290)
T ss_pred             -eeehhHHHHHHHHHHHhcCCCeEEecccc
Confidence             34577887777754  2235668998875

>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.3e-24  Score=178.35  Aligned_cols=236  Identities=18%  Similarity=0.306  Sum_probs=193.6

Q ss_pred             ccceeeeecCCcEEEEE-EcCcc-cceeCCcceeeccccceeEEEeeeeeEEEeeeCCceeecCCcEEEEEEEEEEEEec
Q 022890            5 FCMLCGCIDQASVGIVE-RWGRF-EKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVR   82 (290)
Q Consensus         5 ~~~~~~~V~~g~~~Vv~-~~Gk~-~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~   82 (290)
                      +++|  .|+-|+++|++ ||-.+ ..+.+.|.||.+||. ++.. .+|.|.....++...-|||-+.|+++..+.||-..
T Consensus        25 s~ly--~vdgg~ravifdrf~gv~~~vvgegthflipw~-qk~~-i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~  100 (271)
T KOG3083|consen   25 SALY--NVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWV-QKPI-IFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVV  100 (271)
T ss_pred             hhhc--ccCCCceeEEeecccchhhhcccCCceeeeeec-cCcE-EEeccCCCcccccccCchhhhcccceEEEEecccc
Confidence            5678  99999999997 45444 457899999999999 8875 89999999999989999999999999999999876


Q ss_pred             CchhhhhhhcC-Ch-HHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHH
Q 022890           83 ANADDAFYELQ-NP-KEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVR  160 (290)
Q Consensus        83 ~~~~~~~~~~~-~~-~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~  160 (290)
                      ...+..+.+.+ || +..|-.+....|++++++++..++++.|+-++..+.+.|.+....+|+.+++|.|+++++-.++.
T Consensus       101 sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt  180 (271)
T KOG3083|consen  101 SQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFT  180 (271)
T ss_pred             cccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHH
Confidence            66777777664 55 56777788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHH
Q 022890          161 KAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM  240 (290)
Q Consensus       161 ~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l  240 (290)
                      ++++.++.|+|+.+.+.        -.+.+|+.+..+.++.|||++++.+.++.+++.+            +.-    ++
T Consensus       181 ~AvE~KQVAQQEAErar--------FvVeKAeQqk~aavIsAEGds~aA~li~~sla~a------------G~g----Li  236 (271)
T KOG3083|consen  181 EAVEAKQVAQQEAERAR--------FVVEKAEQQKKAAVISAEGDSKAAELIANSLATA------------GDG----LI  236 (271)
T ss_pred             HHHHHHHHHHHHHHHHH--------HHHHHHhhhhhhheeecccchHHHHHHHHHHhhc------------CCc----ee
Confidence            99999999999877543        2456677777778888888888777777777642            222    22


Q ss_pred             HHHHHHHHHHhhc--CCCCcEEEecCCCCC
Q 022890          241 ITQYFDTIKDLGN--SSNNTTVFLPHGPGH  268 (290)
Q Consensus       241 ~~~~le~l~~~~~--~~~~~~v~lp~~~~~  268 (290)
                      ..+-+|+-++++.  +.+.++.|||.+...
T Consensus       237 elrrlEAa~dia~~Ls~s~nv~YLp~g~s~  266 (271)
T KOG3083|consen  237 ELRRLEAAEDIAYQLSRSRNVTYLPAGQSM  266 (271)
T ss_pred             eehhhhhHHHHHHHHhcCCCceeccCCcce
Confidence            3466777776653  334788999976543

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.88  E-value=9.5e-22  Score=167.41  Aligned_cols=156  Identities=13%  Similarity=0.214  Sum_probs=132.6

Q ss_pred             ccceeeeecCCcEEEEEEcCcccceeCCcceeec----ccccee---------------EEEeeeeeEEEeeeC---C--
Q 022890            5 FCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFN----PCAGQW---------------LAGILSTRINSLDVR---I--   60 (290)
Q Consensus         5 ~~~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~----P~~~~~---------------v~~~~~~r~~~~~~~---~--   60 (290)
                      .|.+  +|++|+++|++++|++.++++||.|+++    |++ ..               + +.++++.+.....   .  
T Consensus        14 ~s~~--iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~   89 (207)
T cd03408          14 GSQL--IVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVL-AFLLSGDKGFSSPFKGEV-YFFNTRVFTDLLWGTPAPV   89 (207)
T ss_pred             CCEE--EEcCCcEEEEEECCEEEEEecCCcceeeecCccHH-HHhcChhhhCcCCceeEE-EEEECEEEeccccCCCCCe
Confidence            4778  9999999999999999999999888765    333 22               3 3677777655321   1  


Q ss_pred             --ceeecCCcEEEEEEEEEEEEecCchhhhhhhcC---------ChHHHHHHHHHHHHHHhccCCCHHHHHhh--HHHHH
Q 022890           61 --ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQ---------NPKEQIQAYVFDVVRALVPRMTLDELFEQ--KGEVA  127 (290)
Q Consensus        61 --~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~---------~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~  127 (290)
                        ...|+|+++|.+++++.|||.|  |.+++.++.         +....|++.+++++|++++++++++++.+  |++|+
T Consensus        90 ~~~~~~~~~v~v~v~~~~~~kI~D--p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~  167 (207)
T cd03408          90 FGRDSEFGGVPLRAFGTYSLKVTD--PVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELS  167 (207)
T ss_pred             eeeCCccceEEEEeeEEEEEEEcC--HHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHH
Confidence              4568889999999999999985  778876653         35678999999999999999999999998  99999


Q ss_pred             HHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHH
Q 022890          128 KAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEI  166 (290)
Q Consensus       128 ~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~  166 (290)
                      +.+++.+++.+++|||+|.+|.|++|++|+++.+++.++
T Consensus       168 ~~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r  206 (207)
T cd03408         168 KAVREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR  206 (207)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence            999999999999999999999999999999999998754

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.86  E-value=2.5e-19  Score=156.12  Aligned_cols=150  Identities=17%  Similarity=0.208  Sum_probs=124.9

Q ss_pred             eecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhh
Q 022890           11 CIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAF   89 (290)
Q Consensus        11 ~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~   89 (290)
                      +..+++..+++.+|.-...+-+| .|.+||  +++. ++|+...++++.. .+.|+.|+|+.|.+..+..|..+++...+
T Consensus         4 ~~~~~~~l~itg~g~~~~~lv~~-~wvf~w--q~~q-~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~elL   79 (428)
T KOG2668|consen    4 VAGASQYLAITGGGIEDIKLVKK-SWVFPW--QQCT-VFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADELL   79 (428)
T ss_pred             cCCccceEEeecccccCceeccc-ceeeee--eeee-EEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHHH
Confidence            66899999999988776555554 455677  5665 8999999999988 69999999999999999998865644332


Q ss_pred             h-------h--cCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCCh--H
Q 022890           90 Y-------E--LQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDP--A  158 (290)
Q Consensus        90 ~-------~--~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~--~  158 (290)
                      .       .  ..+...++...+++++|.++++|+++++|.+|.+|...+++..+.+|..+||.|.+.+|+|+...+  +
T Consensus        80 ~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~~  159 (428)
T KOG2668|consen   80 LYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGHE  159 (428)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccchH
Confidence            1       1  123457788889999999999999999999999999999999999999999999999999998765  6


Q ss_pred             HHHHHH
Q 022890          159 VRKAMN  164 (290)
Q Consensus       159 v~~ai~  164 (290)
                      +..++.
T Consensus       160 YlssLG  165 (428)
T KOG2668|consen  160 YLSSLG  165 (428)
T ss_pred             HHHHhh
Confidence            887776

>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]

Probab=99.85  E-value=1.8e-19  Score=149.03  Aligned_cols=188  Identities=16%  Similarity=0.200  Sum_probs=148.7

Q ss_pred             eecCCcEEEEEEcCccc-ceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEE-EEEEEecCchhh
Q 022890           11 CIDQASVGIVERWGRFE-KLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCS-IQYRIVRANADD   87 (290)
Q Consensus        11 ~V~~g~~~Vv~~~Gk~~-~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~-v~yrI~~~~~~~   87 (290)
                      .|++|++||.+|-|..- .+.+||+|..+||+ ..+. .+.+..|+-++.. .+-|+.|+.+.+|-. +.-++.++..++
T Consensus        25 kieEGHvgvYyRGGALL~~~t~PG~Hl~lPFi-Tt~k-sVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~d~Vyd  102 (322)
T KOG2962|consen   25 KIEEGHVGVYYRGGALLTSITGPGFHLMLPFI-TTYK-SVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPDAVYD  102 (322)
T ss_pred             hcccCceEEEEecceeeeccCCCCcEEEeeee-ecee-eeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhchhHHHH
Confidence            89999999999999875 57899999999999 6765 7777788877777 999999999987743 222222222334


Q ss_pred             hhhhcC-ChH-HHHHHHHHHHHHHhccCCCHHHHHhh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEeecCCCChHHHHH
Q 022890           88 AFYELQ-NPK-EQIQAYVFDVVRALVPRMTLDELFEQ-KGEVAKAVLEELEKVMGAY--GYSIEHILMVDIIPDPAVRKA  162 (290)
Q Consensus        88 ~~~~~~-~~~-~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~v~~a  162 (290)
                      .+.++. ||+ .+|.+-+.-.+...|+.+++.+++-+ -++|.+.++..|++.+..+  |++|..|.++....|+.+...
T Consensus       103 iv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN  182 (322)
T KOG2962|consen  103 IVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRN  182 (322)
T ss_pred             HHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHh
Confidence            444432 454 67889999999999999999999999 8999999999999999998  999999999999999999988


Q ss_pred             HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 022890          163 MNE-------INAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYL  200 (290)
Q Consensus       163 i~~-------~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~  200 (290)
                      ++.       ...|.+.+.....+||.++..+++.||.-|+-.++
T Consensus       183 ~E~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I  227 (322)
T KOG2962|consen  183 FELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKI  227 (322)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            863       33344444556677888888888888776655433

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.82  E-value=1.6e-19  Score=141.43  Aligned_cols=119  Identities=22%  Similarity=0.360  Sum_probs=106.5

Q ss_pred             eeeeeEEEeeeCCceeecCCcEEEEEEEEEEEEecCchhhhhhhcC-C-hHHHHHHHHHHHHHHhccCCCHHHHHh-hHH
Q 022890           48 ILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQ-N-PKEQIQAYVFDVVRALVPRMTLDELFE-QKG  124 (290)
Q Consensus        48 ~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~-~-~~~~l~~~~~~~lr~~i~~~~~~~i~~-~R~  124 (290)
                      .+|+|.++.+.+..++|+||+.+.+++++.|||.++++...+..++ + .+..|++.+++++|+++++++++++++ +|+
T Consensus         2 ~~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~   81 (124)
T cd03400           2 EYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRK   81 (124)
T ss_pred             cccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHH
Confidence            4788889888888999999999999999999998766555554443 2 456899999999999999999999997 599


Q ss_pred             HHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHH
Q 022890          125 EVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEI  166 (290)
Q Consensus       125 ~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~  166 (290)
                      +|.+.+.+.+++.+.+|||+|.+|.|++++||+++.++|+++
T Consensus        82 ~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k  123 (124)
T cd03400          82 EIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK  123 (124)
T ss_pred             HHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999999865

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.76  E-value=1.4e-16  Score=149.01  Aligned_cols=189  Identities=22%  Similarity=0.212  Sum_probs=151.8

Q ss_pred             cceeeeecCCcEEEEEE--c------CcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEE
Q 022890            6 CMLCGCIDQASVGIVER--W------GRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSI   76 (290)
Q Consensus         6 ~~~~~~V~~g~~~Vv~~--~------Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v   76 (290)
                      .||| +.++++..|++.  +      |.-.+++.+|+||++|++ +... ++++++.++++.. .++|+||.++++++..
T Consensus        33 ~~y~-~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~-q~~~-r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a  109 (548)
T COG2268          33 RFYI-IARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIF-QTIE-RMSLTTIKLEVEIDNVYTKDGMPLNVEAVA  109 (548)
T ss_pred             eeEE-ecCCCceEEEeccccCCcccccCCccEEecCceEEecce-eeeE-EeeeeeeeeeeeeeeeEecCCCccceeEEE
Confidence            5775 677777777653  2      444578999999999999 8886 9999999999984 9999999999999999


Q ss_pred             EEEEecC--chhhhhhhc--C----ChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEE
Q 022890           77 QYRIVRA--NADDAFYEL--Q----NPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHI  148 (290)
Q Consensus        77 ~yrI~~~--~~~~~~~~~--~----~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v  148 (290)
                      ..+|.|+  +...+.-.+  .    +....++..+.++||.+++++++.+++.+|..|.+.+.+.+...|.+.|+.|+++
T Consensus       110 ~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~  189 (548)
T COG2268         110 YVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSL  189 (548)
T ss_pred             EEEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeee
Confidence            9999872  222333222  2    3457788999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022890          149 LMVDIIPD-------PAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEA  197 (290)
Q Consensus       149 ~I~~i~~p-------~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~  197 (290)
                      .|.+++.+       ..+.++...+..++-.+.+.+.++|.++...+..++++.++
T Consensus       190 ~I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a  245 (548)
T COG2268         190 AINDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDA  245 (548)
T ss_pred             eecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHH
Confidence            99999988       88999988777777666666666666655555555444333

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.76  E-value=6.8e-18  Score=132.91  Aligned_cols=114  Identities=21%  Similarity=0.308  Sum_probs=101.3

Q ss_pred             eeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhh----hc-----CChHHHHHHHHHHHHHHhccCCCHHH
Q 022890           49 LSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFY----EL-----QNPKEQIQAYVFDVVRALVPRMTLDE  118 (290)
Q Consensus        49 ~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~----~~-----~~~~~~l~~~~~~~lr~~i~~~~~~~  118 (290)
                      +++|.+.++++. .++|+|++++.+++++.|||.++  .+++.    ++     .+.+..+.+.+++++|+++|++++++
T Consensus         2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~e   79 (128)
T cd03399           2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGT--EEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEE   79 (128)
T ss_pred             ccccceeeeccccceecCCCcEEEEEEEEEEEeCCC--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            578899999987 99999999999999999999964  33332    22     23578899999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHH
Q 022890          119 LFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMN  164 (290)
Q Consensus       119 i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~  164 (290)
                      ++++|++|.+++.+.+...+++|||+|.+|.|++|++|+.+.+++.
T Consensus        80 l~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~  125 (128)
T cd03399          80 IYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLG  125 (128)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcC
Confidence            9999999999999999999999999999999999999999887764

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=99.66  E-value=3.5e-15  Score=115.18  Aligned_cols=112  Identities=35%  Similarity=0.566  Sum_probs=99.0

Q ss_pred             EEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChH--HHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHH
Q 022890           53 INSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPK--EQIQAYVFDVVRALVPRMTLDELFEQKGEVAKA  129 (290)
Q Consensus        53 ~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~--~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~  129 (290)
                      ..+.+.+. .++|+|++++.+++++.|+|.++  ..+++.+.+..  ..|.+.+.+++|++++.++++++.++|++|.+.
T Consensus         6 ~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~   83 (121)
T cd02106           6 RQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDP--VKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAE   83 (121)
T ss_pred             eEEecCCCceEEecCCCEEEEEEEEEEEEeCH--HHHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHH
Confidence            34444444 89999999999999999999973  35666665544  899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHH
Q 022890          130 VLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEI  166 (290)
Q Consensus       130 v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~  166 (290)
                      +++.+...+++||++|.+|.|+++++|+++.++++++
T Consensus        84 v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~  120 (121)
T cd02106          84 VREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR  120 (121)
T ss_pred             HHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence            9999999999999999999999999999999998865

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>PF13421 Band_7_1: SPFH domain-Band 7 family

Probab=99.45  E-value=8.4e-12  Score=106.02  Aligned_cols=156  Identities=15%  Similarity=0.229  Sum_probs=120.3

Q ss_pred             cceeeeecCCcEEEEEEcCcccceeCCcceee-------------------ccccceeEEEeeeeeEEE-eeeC--Ccee
Q 022890            6 CMLCGCIDQASVGIVERWGRFEKLAEPGLHFF-------------------NPCAGQWLAGILSTRINS-LDVR--IETK   63 (290)
Q Consensus         6 ~~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~-------------------~P~~~~~v~~~~~~r~~~-~~~~--~~v~   63 (290)
                      +-.  +|++||.+|..+-|++..+.+||.|-+                   .||- ..| |.++++... ..+.  ..+.
T Consensus        15 S~L--iV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~-~eV-yFvn~~~~~~~kwGT~~pi~   90 (211)
T PF13421_consen   15 SQL--IVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFK-AEV-YFVNTKEITNIKWGTPNPIP   90 (211)
T ss_pred             CEE--EECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCce-EEE-EEEECeEecCCccCCCCCee
Confidence            445  899999999999999988999999975                   2443 444 467777642 3333  2332


Q ss_pred             ecC----CcEEEEEEEEEEEEecCchhhhhhhcC---------ChHHHHHHHHHHHHHHhcc--CCCHHHHHhhHHHHHH
Q 022890           64 TKD----NVFVQLLCSIQYRIVRANADDAFYELQ---------NPKEQIQAYVFDVVRALVP--RMTLDELFEQKGEVAK  128 (290)
Q Consensus        64 T~D----~~~v~v~~~v~yrI~~~~~~~~~~~~~---------~~~~~l~~~~~~~lr~~i~--~~~~~~i~~~R~~i~~  128 (290)
                      -.|    .+++.+.+++.|||.|  |..++.++-         +..+.+++.+.+.+.+.++  ++++.+|-+.-.+|++
T Consensus        91 ~~D~~~~~v~lra~G~ys~rI~D--p~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~  168 (211)
T PF13421_consen   91 YRDPEYGPVRLRAFGTYSFRIVD--PVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISE  168 (211)
T ss_pred             ecCCCCCcEEEEEEEEEEEEEeC--HHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            222    3567777788888885  777765432         2356777777777777776  5899999999999999


Q ss_pred             HHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHH
Q 022890          129 AVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEIN  167 (290)
Q Consensus       129 ~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~  167 (290)
                      .+++.|++.++.+||+|.++.|.+|++|+++++.++++.
T Consensus       169 ~~~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~~  207 (211)
T PF13421_consen  169 ALKEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKRA  207 (211)
T ss_pred             HHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999988653

>PTZ00491 major vault protein; Provisional

Probab=98.96  E-value=1.9e-07  Score=91.74  Aligned_cols=151  Identities=17%  Similarity=0.184  Sum_probs=104.4

Q ss_pred             eecCCcEEEEEE--cCcccceeCCcceeeccccceeEEEeeeeeE------E-----EeeeCC-------ceeecCCcEE
Q 022890           11 CIDQASVGIVER--WGRFEKLAEPGLHFFNPCAGQWLAGILSTRI------N-----SLDVRI-------ETKTKDNVFV   70 (290)
Q Consensus        11 ~V~~g~~~Vv~~--~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~------~-----~~~~~~-------~v~T~D~~~v   70 (290)
                      .||.+...=++-  -++-.-++||-+.++=|-  +.+. .+++.-      +     .+.+.+       .+-|+|...+
T Consensus       466 ~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd--E~ft-vlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL  542 (850)
T PTZ00491        466 KVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD--EEFT-VLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARL  542 (850)
T ss_pred             EcCCCcEEEEEEcccCceEEEECCceEEecCC--CceE-EEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceE
Confidence            455554433433  244334679988888885  2222 333321      1     111222       5899999999


Q ss_pred             EEEEEEEEEEe--cCch--hhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhH-HHHHHHHHHHHHH--------H
Q 022890           71 QLLCSIQYRIV--RANA--DDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQK-GEVAKAVLEELEK--------V  137 (290)
Q Consensus        71 ~v~~~v~yrI~--~~~~--~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R-~~i~~~v~~~l~~--------~  137 (290)
                      .+..++.|+..  +.|+  ....|++.|+-.-+-..+.+.+|..++..+++++..+- .-|.+.|+....+        .
T Consensus       543 ~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~  622 (850)
T PTZ00491        543 ALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLR  622 (850)
T ss_pred             EEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceE
Confidence            99999999987  2234  36779999999988899999999999999999999984 4455666653322        3


Q ss_pred             hhccCeEEEEEEeecCCC-ChHHHHHHH
Q 022890          138 MGAYGYSIEHILMVDIIP-DPAVRKAMN  164 (290)
Q Consensus       138 l~~~Gi~i~~v~I~~i~~-p~~v~~ai~  164 (290)
                      |...|+.|.+|.|+++.| ++...++++
T Consensus       623 F~~N~lvit~VDvqsvEpvD~~tr~~Lq  650 (850)
T PTZ00491        623 FPANNLVITNVDVQSVEPVDERTRDSLQ  650 (850)
T ss_pred             EccCCeEEEEEeeeeeeecCHHHHHHHH
Confidence            456799999999999997 455555555

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]

Probab=98.88  E-value=8.3e-08  Score=82.57  Aligned_cols=156  Identities=13%  Similarity=0.158  Sum_probs=118.6

Q ss_pred             cceeeeecCCcEEEEEEcCccccee-CCccee-------------------eccccceeEEEeeeeeEEE-eeeCC--ce
Q 022890            6 CMLCGCIDQASVGIVERWGRFEKLA-EPGLHF-------------------FNPCAGQWLAGILSTRINS-LDVRI--ET   62 (290)
Q Consensus         6 ~~~~~~V~~g~~~Vv~~~Gk~~~~l-~pG~~~-------------------~~P~~~~~v~~~~~~r~~~-~~~~~--~v   62 (290)
                      +..  +|.|++-++...-|++..+. ++|.+-                   ..|+- +.|+ .++++++. +.+..  .+
T Consensus        40 s~l--~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k-~eVy-fvntqe~~girwGT~qpi  115 (345)
T COG4260          40 SIL--HVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFK-QEVY-FVNTQEIKGIRWGTPQPI  115 (345)
T ss_pred             cEE--EEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCccc-ceEE-EEecceecceecCCCCCe
Confidence            455  89999999999999988776 477652                   24554 5664 88888876 55543  33


Q ss_pred             eecC-----CcEEEEEEEEEEEEecCchhhhhhh---------cCChHHHHHHHHHHHHHHhccCC--CHHHHHhhHHHH
Q 022890           63 KTKD-----NVFVQLLCSIQYRIVRANADDAFYE---------LQNPKEQIQAYVFDVVRALVPRM--TLDELFEQKGEV  126 (290)
Q Consensus        63 ~T~D-----~~~v~v~~~v~yrI~~~~~~~~~~~---------~~~~~~~l~~~~~~~lr~~i~~~--~~~~i~~~R~~i  126 (290)
                      .-.|     .++++...+..|+|.|  |..++-.         +++.++.+-+.+..+|...+.++  .+..+-++--+|
T Consensus       116 n~~dn~~~g~l~lRa~Gtys~kvtD--pi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~el  193 (345)
T COG4260         116 NYFDNFYNGELFLRAHGTYSIKVTD--PILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMEL  193 (345)
T ss_pred             ecccccccceeEEeecceEEEEecC--HHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHH
Confidence            3333     5678888888899986  5554432         34456777788888888888764  455777778999


Q ss_pred             HHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHH
Q 022890          127 AKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEIN  167 (290)
Q Consensus       127 ~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~  167 (290)
                      ++.+.+.|.+.+..+|..|++|.|-+|++|++.+..|+.+.
T Consensus       194 sk~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~  234 (345)
T COG4260         194 SKYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRN  234 (345)
T ss_pred             HHHHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhc
Confidence            99999999999999999999999999999999999998654

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=97.41  E-value=0.00065  Score=59.06  Aligned_cols=53  Identities=23%  Similarity=0.204  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Q 022890          168 AAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENI  220 (290)
Q Consensus       168 ~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~  220 (290)
                      .|+.++++.+.+|+++++..+..|+|+|++.+++|+|+|++.++.+++...+.
T Consensus       174 ~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p  226 (242)
T cd03405         174 RAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDP  226 (242)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCH
Confidence            34444556666677777777777777777777777777777777776665443

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365

Probab=97.33  E-value=0.0059  Score=52.95  Aligned_cols=108  Identities=17%  Similarity=0.183  Sum_probs=78.3

Q ss_pred             eeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHH
Q 022890           49 LSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVA  127 (290)
Q Consensus        49 ~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~  127 (290)
                      .+.....++.|. ....+||..+.+.+.+..|-+   ..+ +..-...+..+-..-++.+..+-+.-+-.+++.+-+.|+
T Consensus       120 ~SVnPkVI~~P~i~aVAkdGIql~~kArVTVRaN---i~r-LVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~IS  195 (316)
T PF12127_consen  120 TSVNPKVIDTPTIAAVAKDGIQLKVKARVTVRAN---IDR-LVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSIS  195 (316)
T ss_pred             cccCCeeecCcchhhhhcCCeEEEEEEEEEEEec---HHH-hccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHH
Confidence            444445566665 778999999999988888875   322 333345567777777888887778888899999999998


Q ss_pred             HHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHH
Q 022890          128 KAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKA  162 (290)
Q Consensus       128 ~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~a  162 (290)
                      +.+.+.  ..-...-++|.++.|-||+.-+.+-..
T Consensus       196 k~VL~k--gLDagTAFeIlSIDIaDidVG~NIGA~  228 (316)
T PF12127_consen  196 KTVLEK--GLDAGTAFEILSIDIADIDVGENIGAK  228 (316)
T ss_pred             HHHHhh--CCCcCceeEEEEeeeeccccchhhchh
Confidence            887753  222233599999999999988765433

Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.

>PRK13665 hypothetical protein; Provisional

Probab=97.07  E-value=0.0049  Score=53.22  Aligned_cols=108  Identities=17%  Similarity=0.189  Sum_probs=72.5

Q ss_pred             eeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHH
Q 022890           49 LSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVA  127 (290)
Q Consensus        49 ~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~  127 (290)
                      .+.....++.|. ....+||+.+.+.+.+..|-+   ..+. ..-..-+..+-..-++.+..+-+.-+-.+++.+-+.|+
T Consensus       125 ~SVnPkVI~~P~i~aVAkdGIql~~kARVTVRaN---i~rL-VGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~IS  200 (316)
T PRK13665        125 MSVNPKVIETPFIAAVAKDGIEVKAKARVTVRAN---IDRL-VGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSIS  200 (316)
T ss_pred             cccCCeeecCCcchhhcccCeEEEEEEEEEeehh---HHHH-hCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHH
Confidence            445555666666 778999999998888888854   2222 22222344444455566666667778889999999888


Q ss_pred             HHHHHHHHHHhhc-cCeEEEEEEeecCCCChHHHHHH
Q 022890          128 KAVLEELEKVMGA-YGYSIEHILMVDIIPDPAVRKAM  163 (290)
Q Consensus       128 ~~v~~~l~~~l~~-~Gi~i~~v~I~~i~~p~~v~~ai  163 (290)
                      ..+.+   +-|+. .-++|.++.|-||+.-+.+-..+
T Consensus       201 k~VL~---kGLDagTAFeIlSIDIADvdVG~NIGA~L  234 (316)
T PRK13665        201 KTVLS---KGLDAGTAFEILSIDIADVDVGKNIGAKL  234 (316)
T ss_pred             HHHHh---ccCCcCceeEEEEEeeeccccchhhchhh
Confidence            66653   33443 35999999999999888754333

>TIGR01932 hflC HflC protein

Probab=96.94  E-value=0.0078  Score=54.59  Aligned_cols=37  Identities=16%  Similarity=0.268  Sum_probs=20.0

Q ss_pred             HHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Q 022890          186 LQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILN  222 (290)
Q Consensus       186 ~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~  222 (290)
                      +...+++|++++.++.|+|++++.++.++|++++...
T Consensus       225 a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~  261 (317)
T TIGR01932       225 ARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARII  261 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555666666665555555544333

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=96.80  E-value=0.007  Score=55.13  Aligned_cols=72  Identities=14%  Similarity=0.184  Sum_probs=46.9

Q ss_pred             EEeecCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhh
Q 022890          148 ILMVDIIPDP-AVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHK  226 (290)
Q Consensus       148 v~I~~i~~p~-~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a  226 (290)
                      |.|.++.+-+ .+=..+.+.+.       ...+||.++.+...+|+|++++.+++++|+.++.++.|+|++++....++.
T Consensus       203 I~V~~V~i~~i~~P~~v~~ai~-------~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aeg  275 (334)
T PRK11029        203 IEVVDVRIKQINLPTEVSDAIY-------NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEG  275 (334)
T ss_pred             cEEEEEEEEecCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence            5566665533 22233333333       223455566666778999999999999998888888888888766555443

>TIGR01933 hflK HflK protein

Probab=96.76  E-value=0.016  Score=50.96  Aligned_cols=96  Identities=9%  Similarity=0.015  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHH---hhccCeEEEEEEeecCCCChHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022890          126 VAKAVLEELEKV---MGAYGYSIEHILMVDIIPDPAVRKAMNEI-------NAAQRLQLASVYKGEAEKILQVKRAEAEA  195 (290)
Q Consensus       126 i~~~v~~~l~~~---l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~-------~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaea  195 (290)
                      +.+.+.+.+...   +.=..+.|.++.+-+ .+-+.+.+.+...       ..|+.++...+.+|++++++.+..|+|.+
T Consensus       120 i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~-~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~  198 (261)
T TIGR01933       120 TKERLNEIIDNYDLGITVTDVNFQSARPPE-EVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYK  198 (261)
T ss_pred             HHHHHHHHHhhhcCCcEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444432   344567888888654 2334444433322       23344455566678888888899999999


Q ss_pred             HHHHhcchhhHHHHHHHHHHHHHHHHH
Q 022890          196 EAKYLGGVGVARQRQAITDGLRENILN  222 (290)
Q Consensus       196 e~~~~~A~a~A~a~~~~aea~a~~~~~  222 (290)
                      ++.+++|+|+|++..+.+++...+-..
T Consensus       199 ~~~~~~a~g~a~~~~~~~~ay~~~p~~  225 (261)
T TIGR01933       199 ERRINRAKGDVARFTKLLAEYKKAPDV  225 (261)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhChHH
Confidence            999999999999999888877655433

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=96.45  E-value=0.019  Score=50.64  Aligned_cols=90  Identities=13%  Similarity=0.149  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhhccCeEEE--EEEeecCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhh
Q 022890          129 AVLEELEKVMGAYGYSIE--HILMVDIIPDP-AVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGV  205 (290)
Q Consensus       129 ~v~~~l~~~l~~~Gi~i~--~v~I~~i~~p~-~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~  205 (290)
                      .+.+.+.+.++.. +.-.  .+.|.++.+-+ ..-+.+.+.+.+       ...|+.++.+.+.+|++++++.+.+|+|+
T Consensus       142 ~i~~~i~~~l~~~-~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~-------~~~A~q~~~~~~~eae~~a~~~~~~A~~e  213 (266)
T cd03404         142 EIAQDVRELLQAI-LDAYKAGIEIVGVNLQDADPPEEVQDAFDD-------VNKARQDRERLINEAEAYANEVVPKARGE  213 (266)
T ss_pred             HHHHHHHHHHHHH-hhccCCCeEEEEEEEEeCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence            3455555555432 2222  68888888753 334455544433       23444455666778889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 022890          206 ARQRQAITDGLRENILNFSHK  226 (290)
Q Consensus       206 A~a~~~~aea~a~~~~~~~~a  226 (290)
                      |++..+.|+|.+++....+++
T Consensus       214 a~~~~~~A~a~~~~~~~~ae~  234 (266)
T cd03404         214 AARIIQEAEAYKEEVIAEAQG  234 (266)
T ss_pred             HHHHHHHHHHHHHhHHHHHHH
Confidence            999999999999887777665

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []

Probab=96.41  E-value=0.023  Score=43.09  Aligned_cols=95  Identities=15%  Similarity=0.225  Sum_probs=69.3

Q ss_pred             ceeecCCcEEEEEEEEEEEEec--Cchh--hhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHH-HHHHHHHH--
Q 022890           61 ETKTKDNVFVQLLCSIQYRIVR--ANAD--DAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGE-VAKAVLEE--  133 (290)
Q Consensus        61 ~v~T~D~~~v~v~~~v~yrI~~--~~~~--~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~-i~~~v~~~--  133 (290)
                      .+-|+|...+.+..++.|...-  .++.  ...|++.|+-.-+-..+.+.+|..++..+.+++..+-.. |.+.|...  
T Consensus        10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~   89 (118)
T PF11978_consen   10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE   89 (118)
T ss_dssp             EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred             EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence            5679999999999999998763  2222  667899999999999999999999999999999998433 33333211  


Q ss_pred             ---HH--HHhhccCeEEEEEEeecCCC
Q 022890          134 ---LE--KVMGAYGYSIEHILMVDIIP  155 (290)
Q Consensus       134 ---l~--~~l~~~Gi~i~~v~I~~i~~  155 (290)
                         ++  -.+...|+.|.+|.|+++.|
T Consensus        90 ~~~~r~~~~F~~N~LvIt~vDvqsvEp  116 (118)
T PF11978_consen   90 NGEVRDGLRFPANNLVITSVDVQSVEP  116 (118)
T ss_dssp             -E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred             CCCccceeEEcCCCeEEEEEeeeEecc
Confidence               11  13455699999999999875

This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=96.40  E-value=0.038  Score=51.88  Aligned_cols=35  Identities=11%  Similarity=0.040  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHH
Q 022890          174 LASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQ  208 (290)
Q Consensus       174 ~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a  208 (290)
                      ...+-+|++++.+.+..|+|.+++.+++|+|+|++
T Consensus       273 n~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~r  307 (419)
T PRK10930        273 NEVQPRANGQAQRILEEARAYKAQTILEAQGEVAR  307 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            33444555555555555555555555555555543

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=96.08  E-value=0.023  Score=50.08  Aligned_cols=51  Identities=16%  Similarity=0.174  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 022890          177 VYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKV  227 (290)
Q Consensus       177 ~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~  227 (290)
                      ...|+.++.+.+.+|++++.+.+.+|+|+|++..+.|+|.+++....+++.
T Consensus       152 ~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~  202 (262)
T cd03407         152 INAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGL  202 (262)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            345666666677778888878888888888888888888888777777664

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.80  E-value=0.37  Score=46.42  Aligned_cols=76  Identities=12%  Similarity=0.121  Sum_probs=48.1

Q ss_pred             HhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHhhcC--------CCCcEEE
Q 022890          190 RAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNS--------SNNTTVF  261 (290)
Q Consensus       190 ~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~--------~~~~~v~  261 (290)
                      .++++++++..+++++|++.+..+.+++++.+.+++++...+......  ++..-+++|+.++++        ...|++.
T Consensus       410 ~~~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~--~~~~~vq~Lp~~~~~~~~~~~~i~~~kV~~  487 (548)
T COG2268         410 AAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAE--LFKALVQALPEVAEEAAQPMKNIDSEKVRV  487 (548)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHHHHHhhcccccccceeEEe
Confidence            344577777778888888888888888888999999886544432222  222445666655431        1235556


Q ss_pred             ecCCCC
Q 022890          262 LPHGPG  267 (290)
Q Consensus       262 lp~~~~  267 (290)
                      +|...+
T Consensus       488 i~~~~~  493 (548)
T COG2268         488 IGGANG  493 (548)
T ss_pred             cCCccc
Confidence            665544

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]

Probab=94.49  E-value=0.34  Score=39.30  Aligned_cols=80  Identities=15%  Similarity=0.173  Sum_probs=62.4

Q ss_pred             CcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHhhccCeE
Q 022890           67 NVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVMGAYGYS  144 (290)
Q Consensus        67 ~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l~~~Gi~  144 (290)
                      +....+.+.+.|++.+....   -.++..    .+.+++++...+++.+.+++.+.  ++++..++++.++..|..-+ .
T Consensus        76 ~~~~~v~i~i~l~~~n~~~~---~el~~~----~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~  147 (159)
T COG1580          76 PKDRYVKIAITLEVANKALL---EELEEK----KPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-V  147 (159)
T ss_pred             CCcEEEEEEEEEeeCCHHHH---HHHHHh----hHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-e
Confidence            55667888899999863222   222221    25678899999999999999994  99999999999999998876 8


Q ss_pred             EEEEEeecCC
Q 022890          145 IEHILMVDII  154 (290)
Q Consensus       145 i~~v~I~~i~  154 (290)
                      |.+|.++++.
T Consensus       148 V~dV~fT~fi  157 (159)
T COG1580         148 VKDVLFTNFI  157 (159)
T ss_pred             eEEEeeehhh
Confidence            8899888764

>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=94.26  E-value=0.09  Score=45.51  Aligned_cols=48  Identities=21%  Similarity=0.193  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHH
Q 022890          168 AAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDG  215 (290)
Q Consensus       168 ~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea  215 (290)
                      .+|-+++++++.||+++++.+...++.+...+..|.|+|++....+++
T Consensus       179 esEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a  226 (301)
T KOG2620|consen  179 ESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADA  226 (301)
T ss_pred             hhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhc
Confidence            344555555666666555555555555555555555555554444433

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=92.42  E-value=0.53  Score=41.99  Aligned_cols=50  Identities=22%  Similarity=0.214  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhh
Q 022890          176 SVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHK  226 (290)
Q Consensus       176 ~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a  226 (290)
                      ....||.++.+.+.+|++++++.+++|+|++++..+.++|.+++ +..+++
T Consensus       181 ~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a  230 (291)
T COG0330         181 KQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARA  230 (291)
T ss_pred             HHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhh
Confidence            44567777777899999999999999999999999999999987 444444

>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.94  E-value=2.7  Score=35.66  Aligned_cols=92  Identities=15%  Similarity=0.140  Sum_probs=53.5

Q ss_pred             eecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhh-cc
Q 022890           63 KTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMG-AY  141 (290)
Q Consensus        63 ~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~-~~  141 (290)
                      ..-||+.+.....+..|-+   ..+.+ .-...+..+-..-++.+..+-+.-.-.+++.+-+.|++.+.+   +-|+ ..
T Consensus       139 vam~gievkakaritvran---i~rlv-ggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~gt  211 (328)
T COG4864         139 VAMNGIEVKAKARITVRAN---IERLV-GGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDSGT  211 (328)
T ss_pred             eeccceEEEEEEEEEehhh---HHHHh-CCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCCCc
Confidence            3456666655555544432   22222 222334445444444444444556667888888888877654   2222 23


Q ss_pred             CeEEEEEEeecCCCChHHHH
Q 022890          142 GYSIEHILMVDIIPDPAVRK  161 (290)
Q Consensus       142 Gi~i~~v~I~~i~~p~~v~~  161 (290)
                      -++|.++.|-|++..+.+-.
T Consensus       212 afeilsidiadvdigkniga  231 (328)
T COG4864         212 AFEILSIDIADVDIGKNIGA  231 (328)
T ss_pred             eeEEEEeeeecccccccccc
Confidence            58999999999998876543

>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G

Probab=90.34  E-value=3.9  Score=31.16  Aligned_cols=40  Identities=18%  Similarity=0.231  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 022890          162 AMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLG  201 (290)
Q Consensus       162 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~  201 (290)
                      -|+.-+.||+++..-+.+|..++...+..|+.+|+..+..
T Consensus         7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~   46 (113)
T TIGR01147         7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK   46 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667778888888888888888888888888888775543

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=88.38  E-value=14  Score=31.04  Aligned_cols=51  Identities=18%  Similarity=0.125  Sum_probs=26.1

Q ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHH
Q 022890          159 VRKAMNEINA--AQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQR  209 (290)
Q Consensus       159 v~~ai~~~~~--Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~  209 (290)
                      +.+.|.+...  |+++...-+.+|+.++...+..|+.+|+.....|+.+++..
T Consensus         8 l~dki~~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~   60 (198)
T PRK01558          8 LINKIKKDGLEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDY   60 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444333  33444444445555566666666666666655555555433

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=88.22  E-value=12  Score=30.14  Aligned_cols=10  Identities=30%  Similarity=1.085  Sum_probs=5.8

Q ss_pred             HHHHHHHHHH
Q 022890          240 MITQYFDTIK  249 (290)
Q Consensus       240 l~~~~le~l~  249 (290)
                      +..+|++..+
T Consensus       131 iAsk~~~~~~  140 (154)
T PRK06568        131 LVSEYFQSVK  140 (154)
T ss_pred             HHHHHHHHhc
Confidence            4566666544

>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=86.91  E-value=3.2  Score=37.68  Aligned_cols=87  Identities=22%  Similarity=0.179  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHhhc--
Q 022890          176 SVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGN--  253 (290)
Q Consensus       176 ~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~--  253 (290)
                      ....||+++...+..|++||+..+...++||.+....+.+++++....+.++..  ..++.-+   ..-|++++.++.  
T Consensus       294 ~~klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~--y~~aa~l---~~lLealp~Ia~~i  368 (428)
T KOG2668|consen  294 ETKLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQA--YAQAAYL---RTLLEALPMIAAEI  368 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH--hhhhHHH---HHHHHHHHHHHHHh
Confidence            344577777778888888888888888888888888888888777777766543  2222222   245677776643  


Q ss_pred             ----CCCCcEEEecCCCC
Q 022890          254 ----SSNNTTVFLPHGPG  267 (290)
Q Consensus       254 ----~~~~~~v~lp~~~~  267 (290)
                          ..-+++.++.++++
T Consensus       369 a~plaktnkI~v~s~g~~  386 (428)
T KOG2668|consen  369 AAPLAKTNKISVWSHGGG  386 (428)
T ss_pred             ccchhhcCeEEEEecCCc
Confidence                12358888888743

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=86.11  E-value=5.6  Score=33.45  Aligned_cols=30  Identities=20%  Similarity=0.034  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhcchhhHHHH
Q 022890          180 GEAEKILQVKRAEAEAEAKYLGGVGVARQR  209 (290)
Q Consensus       180 Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~  209 (290)
                      |+.++...+..|+.+|+..+.+|+.+|+..
T Consensus        20 A~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i   49 (198)
T PRK01558         20 AERLANEIILEAKEEAEEIIAKAEEEAKEL   49 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444433

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=85.59  E-value=2.5  Score=35.15  Aligned_cols=25  Identities=12%  Similarity=-0.055  Sum_probs=19.0

Q ss_pred             HHHHHhcchhhHHHHHHHHHHHHHH
Q 022890          195 AEAKYLGGVGVARQRQAITDGLREN  219 (290)
Q Consensus       195 ae~~~~~A~a~A~a~~~~aea~a~~  219 (290)
                      ++..+.+|+++|++..+.|+|++++
T Consensus       171 a~~~~~~a~~ea~~~~~~A~gea~a  195 (196)
T cd03401         171 AKFVVEKAEQEKQAAVIRAEGEAEA  195 (196)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            3345667888888888888888764

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []

Probab=85.00  E-value=13  Score=27.10  Aligned_cols=51  Identities=14%  Similarity=0.330  Sum_probs=41.5

Q ss_pred             HHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHhhccCeEEEEEEeecC
Q 022890          101 AYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVMGAYGYSIEHILMVDI  153 (290)
Q Consensus       101 ~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i  153 (290)
                      +.+++.+...++.++.+++.+.  +..+.+++.+.+++.+.+-  .|.+|.++++
T Consensus        44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f   96 (99)
T PF03748_consen   44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF   96 (99)
T ss_pred             HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence            4677888888899999999974  9999999999999988543  3777777764

FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body

>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated

Probab=84.99  E-value=6.9  Score=30.90  Aligned_cols=53  Identities=13%  Similarity=0.266  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHhhcc-C-eEEEEEEeecC
Q 022890          101 AYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVMGAY-G-YSIEHILMVDI  153 (290)
Q Consensus       101 ~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l~~~-G-i~i~~v~I~~i  153 (290)
                      +.+++.+-..++..+.+++.+.  |+.+.+++.+.++..+.+. | -.|++|.++++
T Consensus        78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F  134 (137)
T PRK05697         78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY  134 (137)
T ss_pred             HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence            5678888889999999999875  9999999999999999764 3 35888888765

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=84.55  E-value=15  Score=27.49  Aligned_cols=37  Identities=22%  Similarity=0.281  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022890          161 KAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEA  197 (290)
Q Consensus       161 ~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~  197 (290)
                      +.|.+.-.|+.+.+..+..|+.++...+..|+.+|+.
T Consensus         3 e~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k   39 (103)
T PRK08404          3 DVIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKK   39 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555566555555555555555555555544444

>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=84.36  E-value=9  Score=31.67  Aligned_cols=83  Identities=17%  Similarity=0.237  Sum_probs=55.9

Q ss_pred             ceeecCC--cEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHh
Q 022890           61 ETKTKDN--VFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVM  138 (290)
Q Consensus        61 ~v~T~D~--~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l  138 (290)
                      .+.++|.  ..+-+.+++.|...+++   ..-.+..    =.+.++..+...++..+.+|+. ++.+|.++++++++..|
T Consensus        92 ~vNLaD~~~~r~~vki~l~~e~~d~~---l~~EL~~----r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL  163 (181)
T PRK06654         92 RGNTADTPPKTFVVKLALGYAENNKN---ILNELGR----RKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSIL  163 (181)
T ss_pred             EEEcCCCCCceEEEEEEEEEEcCCHH---HHHHHHh----ccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhc
Confidence            4455555  33446667777766422   1111111    1256777788888899999999 88999999999999988


Q ss_pred             hccCeEEEEEEeecC
Q 022890          139 GAYGYSIEHILMVDI  153 (290)
Q Consensus       139 ~~~Gi~i~~v~I~~i  153 (290)
                      .+-  .|.+|.+++.
T Consensus       164 ~~G--kV~~VYFTeF  176 (181)
T PRK06654        164 RNG--EIKDIAFTQI  176 (181)
T ss_pred             CCC--ceEEEEEEEE
Confidence            763  4677776664

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=83.74  E-value=26  Score=29.73  Aligned_cols=44  Identities=20%  Similarity=0.076  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHH
Q 022890          169 AQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAI  212 (290)
Q Consensus       169 Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~  212 (290)
                      |+.+...-+.+|+.++...+..|+.+++..+..|+.+++..+..
T Consensus        25 A~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r   68 (207)
T PRK01005         25 AEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQ   68 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555555566666666666666665555555433

>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=82.22  E-value=3.8  Score=32.53  Aligned_cols=51  Identities=12%  Similarity=0.290  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHhhccCeEEEEEEeecC
Q 022890          101 AYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVMGAYGYSIEHILMVDI  153 (290)
Q Consensus       101 ~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i  153 (290)
                      +.+++.+-..++..+.+|+.+.  |+.+.+++.+.++..+.+ | .|.+|.+++.
T Consensus        87 p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f  139 (142)
T PRK07718         87 FQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF  139 (142)
T ss_pred             hhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence            3577777788889999999875  999999999999998876 4 6888888764

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=81.62  E-value=29  Score=28.71  Aligned_cols=29  Identities=34%  Similarity=0.257  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022890          169 AQRLQLASVYKGEAEKILQVKRAEAEAEA  197 (290)
Q Consensus       169 Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~  197 (290)
                      .+.++++..+.+++++......+++++++
T Consensus        12 ~~a~~e~~~I~~ea~~~~~~i~~ea~~~a   40 (188)
T PRK02292         12 DEARARASEIRAEADEEAEEIIAEAEADA   40 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444333334444333

>PRK04057 30S ribosomal protein S3Ae; Validated

Probab=81.33  E-value=18  Score=30.62  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=56.4

Q ss_pred             CceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHH
Q 022890           60 IETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKV  137 (290)
Q Consensus        60 ~~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~  137 (290)
                      .++.|+||..+.+-+.+.-.-.         .-.+-...|+......+...+++++++++...  -+.|..++....+.-
T Consensus       100 vdvkTkDGy~lRv~~i~~T~~r---------a~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~I  170 (203)
T PRK04057        100 VDVTTKDGYKVRVKPVALTTKR---------ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKI  170 (203)
T ss_pred             EEEEcCCCCEEEEEEEEEEchh---------hhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhc
Confidence            3789999999888776543321         11234678999999999999999999999987  466766666665554


Q ss_pred             hhccCeEEEEEEe
Q 022890          138 MGAYGYSIEHILM  150 (290)
Q Consensus       138 l~~~Gi~i~~v~I  150 (290)
                      .--.-++|..+.+
T Consensus       171 yPlr~veIrKvkv  183 (203)
T PRK04057        171 YPLRRVEIRKSKV  183 (203)
T ss_pred             cCcceEEEEEEEE
Confidence            3222344444444

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=80.35  E-value=3.8  Score=34.55  Aligned_cols=28  Identities=21%  Similarity=0.259  Sum_probs=16.9

Q ss_pred             HHhHHHHHHHHhcchhhHHHHHHHHHHH
Q 022890          189 KRAEAEAEAKYLGGVGVARQRQAITDGL  216 (290)
Q Consensus       189 ~~Aeaeae~~~~~A~a~A~a~~~~aea~  216 (290)
                      ..|+.++++.+.+|+|++++.++.++|+
T Consensus       154 ~~A~~~~~a~i~~A~ge~~a~~~~aea~  181 (215)
T cd03403         154 AEAEREKRAKIIEAEGERQAAILLAEAA  181 (215)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3455556666666666666666655543

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	2e-09
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	4e-06
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	2e-05

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 49  LSTRINSLDVRIET-KTKDNVFVQLLCSIQYRIV-----RANADDAF--YELQNPKEQIQ 100
           +S  I +L  R E  +T + V + +    Q +I+      A A + F    +Q+ K  + 
Sbjct: 10  ISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVL 69

Query: 101 AYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVR 160
             +   +R+++  +T++++++ + + AK V E     +G  G  I    + D+       
Sbjct: 70  QTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYL 129

Query: 161 KAMNEINAAQR 171
            ++ +   +  
Sbjct: 130 SSLGKTQTSGP 140

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 50  STRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVR 108
             R   LDV + ET TKDNV V++   + +R+V  +   A  +++N            +R
Sbjct: 10  DLRTQVLDVPVQETITKDNVPVRVNAVVYFRVV--DPVKAVTQVKNYIMATSQISQTTLR 67

Query: 109 ALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINA 168
           +++ +  LDEL  ++ ++   +   +++    +G  +  + + D+     ++KAM     
Sbjct: 68  SVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAE 127

Query: 169 AQRLQLASVYKGEAEKILQVKRAEAEAEA 197
           A+R + A +   EAE+    + AE   EA
Sbjct: 128 AERERRARITLAEAER----QAAEKLREA 152

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 47/307 (15%), Positives = 85/307 (27%), Gaps = 87/307 (28%)

Query: 45  LAGILSTRINSL-----------------DVRIETKTKDNVFVQLLCSIQYRIVRANADD 87
           L   L  R   L                  +R    T DN +  + C     I+     +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTII-----E 360

Query: 88  AFYELQNPKEQIQAY----VF--DVVRALVPRMTLDEL-FEQKGEVAKAVLEEL------ 134
           +   +  P E  + +    VF        +P + L  + F+        V+ +L      
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 135 EKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAE 194
           EK       SI   + +++        A++  +      +   +  +             
Sbjct: 418 EKQPKESTISI-PSIYLELKVKLENEYALHR-SIVDHYNIPKTFDSDDLIPPY------- 468

Query: 195 AEAKY--------LGGVGVARQRQAITDGLRENILNFS---HKVE------GASAKEVMD 237
              +Y        L  +    +        R   L+F     K+        AS   +  
Sbjct: 469 -LDQYFYSHIGHHLKNIEHPER----MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523

Query: 238 LIMITQYFDTIKDLGNSSNNTTV------FLP-HGPGHVR-DISDQIRNGLM-------E 282
           L  +  Y   I D  N      +      FLP      +    +D +R  LM       E
Sbjct: 524 LQQLKFYKPYICD--NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581

Query: 283 ASAAQVE 289
            +  QV+
Sbjct: 582 EAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 51/218 (23%)

Query: 102 YVFDVVRALVPRMTLDELFEQ----------------KGE--VAKAVLEELEKVMGAYGY 143
            V D+ ++++ +  +D +                   K E  V K V E L      Y +
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKF 93

Query: 144 SIEHILMVDIIPDPAVRKAMNEI----NAAQRLQLASVYKGEAEKILQVKRAEAEAE-AK 198
            +  I      P    R  + +     N  Q     +V +   +  L++++A  E   AK
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAK 151

Query: 199 YL-----GGVG-------VARQRQAITDGLRENI--LNFSHKVEGASAKEVMDLIMITQY 244
            +      G G       V      +   +   I  LN               L M+ + 
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIFWLNL-----KNCNSPETVLEMLQKL 205

Query: 245 FDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLME 282
              I     S ++ +  +      +  I  ++R  L  
Sbjct: 206 LYQIDPNWTSRSDHSSNIKL---RIHSIQAELRRLLKS 240

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Length = 133

 Score = 44.4 bits (106), Expect = 4e-06
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 52  RINSLDV-RIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRAL 110
           R  S D+   E  TKD+V + +   + YR+   NA  A   + N     +      +R  
Sbjct: 17  RTISFDIPPQEVLTKDSVTISVDGVVYYRVQ--NATLAVANITNADSATRLLAQTTLRNA 74

Query: 111 VPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMN 164
           +    L ++   + E+A  +   L+     +G  +E + + D+     +++AM 
Sbjct: 75  LGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMA 128

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Length = 113

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 64  TKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQK 123
            KDNV V +   + Y+++  +   A Y + +    I       +RA++  M LDE    +
Sbjct: 21  CKDNVVVTVDAVVYYQVI--DPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGR 78

Query: 124 GEVAKAVLEELEKVMGAYGYSIEHILMVDIIP 155
             +   + EEL+K+   +G  I  + +  I P
Sbjct: 79  DIINARLREELDKITDRWGVKITRVEIQRIDP 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.97
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	99.94
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.87
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	99.85
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	99.03
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	83.15
2xzm_4	265	40S ribosomal protein S3A; ribosome, translation;	83.05
3v6i_B	105	V-type ATP synthase, subunit (VAPC-therm); periphe	80.56

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.97  E-value=4.4e-30  Score=214.37  Aligned_cols=179  Identities=21%  Similarity=0.264  Sum_probs=142.0

Q ss_pred             ccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHH
Q 022890           40 CAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDE  118 (290)
Q Consensus        40 ~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~  118 (290)
                      |+ +++. ++|+|.++++++. .++|+|+++|.++++++|||.|  |.++++.+.|+...+.+.+++++|+++|++++++
T Consensus         2 fi-~~v~-~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~d--p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~e   77 (188)
T 3bk6_A            2 IF-EKAV-IVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVD--PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDE   77 (188)
T ss_dssp             CE-EECC-CCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             ce-EEEE-EEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECC--HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence            56 7885 9999999999988 9999999999999999999995  7888999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022890          119 LFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAK  198 (290)
Q Consensus       119 i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~  198 (290)
                      ++++|++|+..+++.|++.+++|||+|.+|.|++|+||+++.++|++++.|++++++.+.+|||++++           .
T Consensus        78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a-----------~  146 (188)
T 3bk6_A           78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQA-----------A  146 (188)
T ss_dssp             HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------H
Confidence            99999999999999999999999999999999999999999999999988888777666555555433           2


Q ss_pred             HhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 022890          199 YLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNT  258 (290)
Q Consensus       199 ~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~  258 (290)
                      ++.           +++    .+.++.      +|.+    +.+||||++.++++++|+|
T Consensus       147 ~~~-----------a~a----~~~~~~------~~~~----l~lr~le~~~~ia~~~~~~  181 (188)
T 3bk6_A          147 EKL-----------REA----AEIISE------HPMA----LQLRTLQTISDVAGDKSNL  181 (188)
T ss_dssp             HHH-----------HHH----HHHHHH------CTTH----HHHHHTTC-----------
T ss_pred             HHH-----------HHH----HHHHHh------CHHH----HHHHHHHHHHHHhcCCCCc
Confidence            222           111    111211      4543    4569999999999876554

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=99.94  E-value=5.3e-27  Score=184.77  Aligned_cols=130  Identities=20%  Similarity=0.286  Sum_probs=106.1

Q ss_pred             eeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCC
Q 022890           36 FFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRM  114 (290)
Q Consensus        36 ~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~  114 (290)
                      +.+||+ +++. ++|+|.++++++. +++|+|+..+.++++++|||.|  |.++++++.|++..+...+++++|+++|++
T Consensus         3 l~~P~i-d~v~-~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~D--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~   78 (133)
T 4fvg_A            3 LGSPST-DSAA-KVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQN--ATLAVANITNADSATRLLAQTTLRNALGTK   78 (133)
T ss_dssp             -------------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCce-eEEE-EEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEee--hHHhHhhhhhHHHHHHHHHHHHHHHHhccc
Confidence            678999 9997 9999999999988 8999999999999999999994  899999999999999999999999999999


Q ss_pred             CHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHHHH
Q 022890          115 TLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAA  169 (290)
Q Consensus       115 ~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~A  169 (290)
                      ++++++++|++|...+++.+++.+++|||+|.+|.|++++||+++.++|.++++|
T Consensus        79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A  133 (133)
T 4fvg_A           79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA  133 (133)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999877665

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.87  E-value=5e-23  Score=164.00  Aligned_cols=128  Identities=15%  Similarity=0.205  Sum_probs=113.1

Q ss_pred             ccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcC--------ChHHHHHHHHHHHHHHh
Q 022890           40 CAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQ--------NPKEQIQAYVFDVVRAL  110 (290)
Q Consensus        40 ~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~--------~~~~~l~~~~~~~lr~~  110 (290)
                      |+ +++. ++|+|.+++++++ +++|+|++++.|+++++|||.+ +|.++.+.+.        ..+..+.+.++++||++
T Consensus         3 ~i-~~v~-~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~d-d~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~v   79 (143)
T 1win_A            3 SG-SSGQ-RISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMT-EKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSI   79 (143)
T ss_dssp             CC-CCCC-SCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECC-CSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cc-eEEE-EEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECC-CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence            56 7886 9999999999998 8999999999999999999984 2444433322        23567889999999999


Q ss_pred             ccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHHHHH
Q 022890          111 VPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQ  170 (290)
Q Consensus       111 i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~Ae  170 (290)
                      +|++++++++++|+.|.+.+++.+++.+++|||+|.+|.|++|++|+++.+||.+++.||
T Consensus        80 iG~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae  139 (143)
T 1win_A           80 LGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG  139 (143)
T ss_dssp             HHHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999999998776665

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=99.85  E-value=3.3e-21  Score=147.39  Aligned_cols=109  Identities=25%  Similarity=0.358  Sum_probs=105.1

Q ss_pred             eeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHH
Q 022890           48 ILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEV  126 (290)
Q Consensus        48 ~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i  126 (290)
                      ++|+|.++++++. .++|+|+++|.++++++|||.|  |.++++++.+++..|.+.+++++|+++|++++++++++|++|
T Consensus         4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~d--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i   81 (113)
T 2rpb_A            4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVID--PVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDII   81 (113)
T ss_dssp             CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESC--TTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHH
T ss_pred             EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECC--HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHH
Confidence            6899999999998 9999999999999999999985  789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCeEEEEEEeecCCCChH
Q 022890          127 AKAVLEELEKVMGAYGYSIEHILMVDIIPDPA  158 (290)
Q Consensus       127 ~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~  158 (290)
                      ++.+++.+++.+++|||+|.+|.|++|+||++
T Consensus        82 ~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e  113 (113)
T 2rpb_A           82 NARLREELDKITDRWGVKITRVEIQRIDPPKD  113 (113)
T ss_dssp             HHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred             HHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence            99999999999999999999999999999974

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=99.03  E-value=1.1e-07  Score=92.15  Aligned_cols=151  Identities=17%  Similarity=0.220  Sum_probs=102.5

Q ss_pred             eecCCcEEEEEEc--CcccceeCCcceeeccccceeEEEeeeee-----------EEEeeeCC-------ceeecCCcEE
Q 022890           11 CIDQASVGIVERW--GRFEKLAEPGLHFFNPCAGQWLAGILSTR-----------INSLDVRI-------ETKTKDNVFV   70 (290)
Q Consensus        11 ~V~~g~~~Vv~~~--Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r-----------~~~~~~~~-------~v~T~D~~~v   70 (290)
                      .||.+...-++-+  |+..-++||-+.++-|-  +.+. .+++.           ...+.+.+       .+-|+|...+
T Consensus       461 rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd--E~ft-vlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL  537 (861)
T 2zuo_A          461 RVPHNAAVQVYDYRAKRARVVFGPELVTLDPE--EQFT-VLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARL  537 (861)
T ss_dssp             ECCTTEEEEEECSSSCCEEEECSSCEEECCSS--CEEC-CEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEE
T ss_pred             EcCCCeEEEEEecCCCceEEEECCcEEEECCC--ccEE-EEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEE
Confidence            5666666666654  44444678888776664  2221 23221           12222332       6899999999


Q ss_pred             EEEEEEEEEEec---Cchh--hhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHH-HHHHHHH-----------
Q 022890           71 QLLCSIQYRIVR---ANAD--DAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEV-AKAVLEE-----------  133 (290)
Q Consensus        71 ~v~~~v~yrI~~---~~~~--~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i-~~~v~~~-----------  133 (290)
                      .+..++.|+..-   .++.  ...|.+.|+-.-+=..+.+.+|..++..+++++..+-..| ...++..           
T Consensus       538 ~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~  617 (861)
T 2zuo_A          538 QLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGT  617 (861)
T ss_dssp             EEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC----------
T ss_pred             EEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccc
Confidence            999999999852   2233  6778999999888899999999999999999999985444 2222211           


Q ss_pred             ----HH--HHhhccCeEEEEEEeecCCC-ChHHHHHHH
Q 022890          134 ----LE--KVMGAYGYSIEHILMVDIIP-DPAVRKAMN  164 (290)
Q Consensus       134 ----l~--~~l~~~Gi~i~~v~I~~i~~-p~~v~~ai~  164 (290)
                          .+  -.+...|+.|.+|.|+++.| ++...++++
T Consensus       618 ~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~Lq  655 (861)
T 2zuo_A          618 LLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQ  655 (861)
T ss_dssp             ---CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHH
T ss_pred             cccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHH
Confidence                00  12566799999999999997 444555554

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=83.15  E-value=12  Score=29.79  Aligned_cols=19  Identities=32%  Similarity=0.312  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHhHHHHHH
Q 022890          179 KGEAEKILQVKRAEAEAEA  197 (290)
Q Consensus       179 ~Ae~~~~~~i~~Aeaeae~  197 (290)
                      +|+.++...+..|+.+|++
T Consensus        21 eA~~~a~~I~~eA~~eA~~   39 (187)
T 3v6i_A           21 EAEAKAEAVKREAEEKAKA   39 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444

>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4

Probab=83.05  E-value=2.5  Score=35.79  Aligned_cols=87  Identities=10%  Similarity=0.245  Sum_probs=58.4

Q ss_pred             ceeecCCcEEEEEEEEEEEEec---CchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHH
Q 022890           61 ETKTKDNVFVQLLCSIQYRIVR---ANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELE  135 (290)
Q Consensus        61 ~v~T~D~~~v~v~~~v~yrI~~---~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~  135 (290)
                      ++.|.||..+.+-+...-.-..   ....+..|.-..-...|+......+...++..++.+++..  -+.|..+|....+
T Consensus       129 dVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k~~k  208 (265)
T 2xzm_4          129 DCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETK  208 (265)
T ss_dssp             EEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             EEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHHHhh
Confidence            7899999999987765544332   1222333333344578999999999999999999999987  4555555555444


Q ss_pred             HHhhccCeEEEEEEeec
Q 022890          136 KVMGAYGYSIEHILMVD  152 (290)
Q Consensus       136 ~~l~~~Gi~i~~v~I~~  152 (290)
                      ..     +.+.+|.|+.
T Consensus       209 ~I-----yPL~~V~IrK  220 (265)
T 2xzm_4          209 NI-----FPLQNITIRK  220 (265)
T ss_dssp             TT-----CCEEEEEEEE
T ss_pred             hc-----cccceEEEEE
Confidence            32     3455566655

>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I

Probab=80.56  E-value=13  Score=26.45  Aligned_cols=25  Identities=40%  Similarity=0.288  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhcc
Q 022890          178 YKGEAEKILQVKRAEAEAEAKYLGG  202 (290)
Q Consensus       178 ~~Ae~~~~~~i~~Aeaeae~~~~~A  202 (290)
                      ..|..++...+..|+++|.+...+|
T Consensus        23 E~Ar~eA~~~v~~AEAeA~ril~eA   47 (105)
T 3v6i_B           23 EAAKKEAEERVKRAEAEAKALLEEA   47 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444433333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d1wina_	143	d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T	3e-16

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (175), Expect = 3e-16
 Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 49  LSTRINSLDVRIET-KTKDNVFVQLLCSIQYRIVRANADDAF-------YELQNPKEQIQ 100
           +S  I +L  R E  +T + V + +    Q +I+      A          +Q+ K  + 
Sbjct: 10  ISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVL 69

Query: 101 AYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVR 160
             +   +R+++  +T++++++ + + AK V E     +G  G  I    + D+       
Sbjct: 70  QTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYL 129

Query: 161 KAMNEINAAQR 171
            ++ +   +  
Sbjct: 130 SSLGKTQTSGP 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.84

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=6.5e-22  Score=155.68  Aligned_cols=121  Identities=17%  Similarity=0.270  Sum_probs=109.5

Q ss_pred             EeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhh---------hhcCChHHHHHHHHHHHHHHhccCCCH
Q 022890           47 GILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAF---------YELQNPKEQIQAYVFDVVRALVPRMTL  116 (290)
Q Consensus        47 ~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~---------~~~~~~~~~l~~~~~~~lr~~i~~~~~  116 (290)
                      .++|++.++++++. +++|+||++|.|+++++|||.++  .+++         +...+++..|++.+++++|++++++++
T Consensus         8 ~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~--~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l   85 (143)
T d1wina_           8 QRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTE--KELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV   85 (143)
T ss_dssp             CSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCC--SSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             eEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCc--HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccH
Confidence            38999999999998 89999999999999999999973  2222         134567889999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHHHH
Q 022890          117 DELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAA  169 (290)
Q Consensus       117 ~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~A  169 (290)
                      ++++++|++|.+.+.+.+++.+++|||+|.+|.|+||++|+++.++|.++++|
T Consensus        86 ~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          86 EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999876554