Citrus Sinensis ID: 022910

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEEcccccEEEEccccccEEEEccccccEEEEEcccccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEccccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccc
Coil and Loop (DISEMBL)
mnnpihneveddqrevfldesdiihevtvddedlpdvdddddpgsdaenteqpddsthifsghsdevysvacsptdatlvatgggddkgffwrinqgdwaseiqghkdsvsslafsmdgqllasggldglvqiwdpssgnlkctlegpgggvewvswhprghivlagsedstvWMWNADRAAYLNMfsghgssvtcgdftpdgktictgsddatlrvwnpksgenihvirghpyhtegltcltisadstlalsgskdgsvhMVNITTGKVVSSLVShtdsiecigfsrse
Flexible Loop (DISEMBL)
mnnpihneveddqreVFLDESDIIhevtvddedlpdvDDDDDPGSdaenteqpddstHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVvsslvshtdsiecigfsrse
Low Complexity Region (SEG)
MNNPIHNEVEDDQREVFLDESDIIHEVTVddedlpdvdddddpgsdAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE
Disordered region (IsUnstruct)
**********************II*****************************************************************FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG*****
Disordered Region (DISOPRED)
*NNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS*
Disordered Region (DISEMBL)
MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDD***************DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE
Disordered Region (DISPRO)
MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q7YR70	435	Angio-associated migrator	yes	no	0.782	0.521	0.4	1e-43
Q3SZK1	434	Angio-associated migrator	yes	no	0.758	0.506	0.408	2e-43
Q5RCG7	434	Angio-associated migrator	yes	no	0.782	0.523	0.4	3e-43
Q13685	434	Angio-associated migrator	yes	no	0.782	0.523	0.4	3e-43
O13982	399	Uncharacterized WD repeat	yes	no	0.962	0.699	0.316	7e-39
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.765	0.131	0.330	3e-31
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.779	0.148	0.347	4e-31
Q00808	1356	Vegetative incompatibilit	no	no	0.782	0.167	0.363	4e-30
P49695	742	Probable serine/threonine	no	no	0.703	0.274	0.339	7e-28
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.734	0.169	0.327	3e-25

>sp|Q7YR70|AAMP_CANFA Angio-associated migratory cell protein OS=Canis familiaris GN=AAMP PE=3 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 125/230 (54%), Gaps = 3/230 (1%)

Query: 49  NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
           + E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKD
Sbjct: 77  SMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKD 136

Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
           SV+   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+
Sbjct: 137 SVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFE--AGDLEWMEWHPRAPVLLAGT 194

Query: 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
            D   WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV
Sbjct: 195 ADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHV 253

Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278
           ++G   H   LTC+  + D +L L+GS D    +V+ TTGKVV      T
Sbjct: 254 LKGTEGHQGPLTCVATNQDGSLILTGSVDCQAQLVSATTGKVVGVFRPET 303

Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway.
Canis familiaris (taxid: 9615)

>sp|Q3SZK1|AAMP_BOVIN Angio-associated migratory cell protein OS=Bos taurus GN=AAMP PE=2 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/223 (40%), Positives = 125/223 (56%), Gaps = 3/223 (1%)

Query: 49  NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
           + E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKD
Sbjct: 76  SMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKD 135

Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
           SV+   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+
Sbjct: 136 SVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFE--AGDLEWMEWHPRAPVLLAGT 193

Query: 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
            D   WMW          F G     TCG   PDGK    G +D T+R+W+ K G +IHV
Sbjct: 194 ADGNTWMWKVPTGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGNSIHV 252

Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
           ++G   H   LTC+  + D +L L+GS D    +V+ TTGKVV
Sbjct: 253 LKGTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKVV 295

Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway.

Bos taurus (taxid: 9913)

>sp|Q5RCG7|AAMP_PONAB Angio-associated migratory cell protein OS=Pongo abelii GN=AAMP PE=2 SV=2

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 125/230 (54%), Gaps = 3/230 (1%)

Query: 49  NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
           + E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKD
Sbjct: 76  SMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKD 135

Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
           SV+   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+
Sbjct: 136 SVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFE--AGDLEWMEWHPRAPVLLAGT 193

Query: 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
            D   WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV
Sbjct: 194 ADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHV 252

Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278
           ++G   H   LTC+  + D +L L+GS D    +V+ TTGKVV      T
Sbjct: 253 LKGTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKVVGVFRPET 302

Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway.

Pongo abelii (taxid: 9601)

>sp|Q13685|AAMP_HUMAN Angio-associated migratory cell protein OS=Homo sapiens GN=AAMP PE=1 SV=2

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 125/230 (54%), Gaps = 3/230 (1%)

Query: 49  NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
           + E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKD
Sbjct: 76  SMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKD 135

Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
           SV+   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+
Sbjct: 136 SVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFE--AGDLEWMEWHPRAPVLLAGT 193

Query: 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
            D   WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV
Sbjct: 194 ADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHV 252

Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278
           ++G   H   LTC+  + D +L L+GS D    +V+ TTGKVV      T
Sbjct: 253 LKGTEGHQGPLTCVAANQDGSLILTGSVDCQAKLVSATTGKVVGVFRPET 302

Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway.

Homo sapiens (taxid: 9606)

>sp|O13982|YEC8_SCHPO Uncharacterized WD repeat-containing protein C25H1.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25H1.08c PE=4 SV=1

 Score =  161 bits (407), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 153/294 (52%), Gaps = 15/294 (5%)

Query: 10  EDDQREVFLDESDIIHEVTVDDEDLPDV----DDDDDPGSDAENTEQPDDSTHIFSGHSD 65
           E++ +E+++ E+++  EV  D++ L D     D+ +   +D  N    D S   F  H D
Sbjct: 4   EEENQELYIAENEV-EEVIKDNDKLMDQGVTEDEAEQEQNDTMNNMVMDMSVQGFFEHKD 62

Query: 66  EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG 125
            V+SV+ +P  + L A+GGGDD G+ W I  G+   ++ GHKDS+ ++ +S DG  +A+G
Sbjct: 63  SVFSVSINPVHSNLCASGGGDDLGYIWDITTGEQICQLTGHKDSIVAIDWSFDGTYIATG 122

Query: 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185
           G+D  V++W  S+G    T       + W+SWHP+G  + AG  D ++WMW+      + 
Sbjct: 123 GMDSQVRLWKSSTGFEFITAFETVDEIVWLSWHPKGLFLAAGCNDGSIWMWSLPSGKVVQ 182

Query: 186 MFSGHGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSG--------ENIHVIRGHPYH 235
           +  GH + V  G F P   GK + T  D  TL VWNP +G        ++     G+   
Sbjct: 183 VMYGHTAPVNAGKFIPPGVGKRLATVDDSGTLIVWNPATGAPECRMSSDDHRFDPGNEET 242

Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
             G T    +A+  +   G   G V +VNI +  +++SL + T+S+E I    +
Sbjct: 243 AAGWTSFDCNAEGNVLFLGGSSGKVKVVNINSSHILASLEAQTESVEAIALCTA 296

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 5/227 (2%)

Query: 60   FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             +GH D VYSV+ SP D   +A+GG D     W+ + G     I GH+ +V+++ FS DG
Sbjct: 1109 LNGHEDAVYSVSFSP-DGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDG 1167

Query: 120  QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            + LAS   D  +++WD +SG L  TL G   GV  V + P G  + AGSED TV +W+  
Sbjct: 1168 KNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQ 1227

Query: 180  RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
                L   +GH   V    F+PDGKT+ + S D T+++W    G+ +  ++G   H + +
Sbjct: 1228 DGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKLVKTLKG---HNDSV 1284

Query: 240  TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286
              +  S+D     S S+D ++ + N   G  + +   H+  +  + F
Sbjct: 1285 WDVNFSSDGKAIASASRDNTIKLWN-RHGIELETFTGHSGGVYAVNF 1330

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 128/230 (55%), Gaps = 4/230 (1%)

Query: 58   HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
            +   GH++ V +VA SP  ATL A+G GD     W I+       +QGH   V+S+ F+ 
Sbjct: 1152 YTLQGHTNWVNAVAFSPDGATL-ASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNP 1210

Query: 118  DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
            DG  LASG  D  V++W+ +S    CT +G    V  V ++P G ++ +GS D TV +W+
Sbjct: 1211 DGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWD 1270

Query: 178  ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
               +  L+ F GH + V    F PDG  + +GS D T+R+W   S + +H  +G   HT 
Sbjct: 1271 ISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQG---HTS 1327

Query: 238  GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
             ++ +T S D T+  SGS D +V + +I++G+ + + + HT+ +  + FS
Sbjct: 1328 WVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFS 1377

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  132 bits (331), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 118/231 (51%), Gaps = 4/231 (1%)

Query: 57   THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
            T    GH   V SVA SP D   VA+G GD     W    G     ++GH  SV S+AFS
Sbjct: 960  TQTLEGHGSSVLSVAFSP-DGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFS 1018

Query: 117  MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
             DGQ +ASG  D  ++IWD +SG    TLEG GG V+ V + P G  V +GS+D T+ +W
Sbjct: 1019 PDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIW 1078

Query: 177  NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT 236
            +A          GHG SV    F+PDG+ + +GS D T+++W+  SG     + GH    
Sbjct: 1079 DAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWV 1138

Query: 237  EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
                 +  S D     SGS DG++ + +  +G    +L  H   ++ + FS
Sbjct: 1139 HS---VAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFS 1186

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score =  124 bits (311), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 116/209 (55%), Gaps = 5/209 (2%)

Query: 59  IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD 118
           +F GH+  V  +A SP D ++VA+G  D     W +  G   + ++GH D V ++AFS D
Sbjct: 538 VFEGHTHYVLDIAFSP-DGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPD 596

Query: 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
           G ++ASG  DG +++WD ++G  +  L+ P   V  +++ P G +++ GS DSTV +W+ 
Sbjct: 597 GSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGS-DSTVHLWDV 655

Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238
                L+ F GH   V    F+PDG  + +GSDD T+R+W+  + E    + G   HTE 
Sbjct: 656 ASGEALHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHTTLEG---HTEP 712

Query: 239 LTCLTISADSTLALSGSKDGSVHMVNITT 267
           +  +    + T   S S+DG++ +  I T
Sbjct: 713 VHSVAFHPEGTTLASASEDGTIRIWPIAT 741

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 4/217 (1%)

Query: 58   HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
             I   H+D VY+V   P    ++ATG  D     W I+ G     +  H D +  +A+S 
Sbjct: 1014 QILLEHTDWVYAVVFHP-QGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSP 1072

Query: 118  DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
            DGQLLAS   D  V++WD  +G     L G    V    + P G I+   S D TV +W+
Sbjct: 1073 DGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWD 1132

Query: 178  ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
              +   L   +GH + V    F+PDGK + + S D T+R+W+  +G+  H+  G   HT 
Sbjct: 1133 WQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIG---HTH 1189

Query: 238  GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274
             ++ +  S D  +  SGS+D +V + N+ TG+ +  L
Sbjct: 1190 LVSSVAFSPDGEVVASGSQDQTVRIWNVKTGECLQIL 1226

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
152926156	408	transducin family protein [Carica papaya	0.975	0.693	0.787	1e-130
449441201	392	PREDICTED: vegetative incompatibility pr	0.968	0.716	0.763	1e-124
449503766	392	PREDICTED: vegetative incompatibility pr	0.968	0.716	0.763	1e-124
225444924	391	PREDICTED: angio-associated migratory ce	0.986	0.731	0.768	1e-119
147771302	391	hypothetical protein VITISV_007962 [Viti	0.986	0.731	0.754	1e-118
297738669	393	unnamed protein product [Vitis vinifera]	0.986	0.727	0.762	1e-118
225460494	391	PREDICTED: angio-associated migratory ce	0.986	0.731	0.750	1e-117
30698820	407	transducin/WD-40 repeat-containing prote	0.962	0.685	0.714	1e-113
224135435	378	predicted protein [Populus trichocarpa]	0.937	0.719	0.739	1e-113
224146457	390	predicted protein [Populus trichocarpa]	0.972	0.723	0.712	1e-111

>gi|152926156|gb|ABS32230.1| transducin family protein [Carica papaya] gi|164522082|gb|ABY60781.1| transducin family protein [Carica papaya]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/287 (78%), Positives = 253/287 (88%), Gaps = 4/287 (1%)

Query: 1   MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
           MN+P   E  DDQ EVF+DESD+IHE TVD+EDLPD +DD    SDAEN E+PDDS HIF
Sbjct: 1   MNSPPPEE--DDQGEVFIDESDVIHEFTVDEEDLPDAEDD--ASSDAENIEEPDDSMHIF 56

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
           +GH+ E+Y+VACSPTDA LVATGGGDDKGF W+I +GDW SE+ GHKDSVS LAFS DGQ
Sbjct: 57  TGHTGELYAVACSPTDARLVATGGGDDKGFLWKIGRGDWGSELLGHKDSVSCLAFSTDGQ 116

Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
            LASGGLDGLVQIWD SSGN+KC LEGP  G+EWV WHPRGH+VLAGSED TVWMWNADR
Sbjct: 117 FLASGGLDGLVQIWDASSGNIKCALEGPEKGIEWVRWHPRGHLVLAGSEDCTVWMWNADR 176

Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
            AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR+WNP+SGENIHV++GHPYHTEGLT
Sbjct: 177 GAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRIWNPRSGENIHVVKGHPYHTEGLT 236

Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
           CL +S+DS+LAL+GSKD SVH+VNI TGKVVSSL SHTDS+EC+GFS
Sbjct: 237 CLAMSSDSSLALTGSKDSSVHIVNIVTGKVVSSLDSHTDSVECVGFS 283

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441201|ref|XP_004138371.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Cucumis sativus]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/283 (76%), Positives = 248/283 (87%), Gaps = 2/283 (0%)

Query: 7   NEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDE 66
           +E EDD  EVFLDE+DIIHEV VD+EDLPD  D++  GSD E  ++ DDS H F+GH+ E
Sbjct: 7   HEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEE--GSDDEYFDEADDSVHTFTGHTGE 64

Query: 67  VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126
           VY+V CSP DATLVATGGGDDKGF W+I +GD+A E+ GHKDSVSSLAFS DGQLLASG 
Sbjct: 65  VYTVVCSPVDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGS 124

Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186
            DG++QIWD SSGNLKCTLEGPGGG+EWV WHPRGH+VLAGSEDST WMWNADR  YLN+
Sbjct: 125 FDGIIQIWDTSSGNLKCTLEGPGGGIEWVRWHPRGHLVLAGSEDSTAWMWNADRGIYLNI 184

Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
           FSGHG+SVTCGDFTPDGK ICTGSDDAT+R+WNP+SGENIHV+RGHPYHTEGLT L +++
Sbjct: 185 FSGHGASVTCGDFTPDGKIICTGSDDATMRIWNPRSGENIHVVRGHPYHTEGLTSLALTS 244

Query: 247 DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
           DSTLAL+GSKDGSVH+VNI TGKVV+SLVSH+DSIECIG + S
Sbjct: 245 DSTLALTGSKDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPS 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503766|ref|XP_004162166.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Cucumis sativus]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/283 (76%), Positives = 248/283 (87%), Gaps = 2/283 (0%)

Query: 7   NEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDE 66
           +E EDD  EVFLDE+DIIHEV VD+EDLPD  D++  GSD E  ++ DDS H F+GH+ E
Sbjct: 7   HEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEE--GSDDEYFDEADDSVHTFTGHTGE 64

Query: 67  VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126
           VY+V CSP DATLVATGGGDDKGF W+I +GD+A E+ GHKDSVSSLAFS DGQLLASG 
Sbjct: 65  VYTVVCSPLDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGS 124

Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186
            DG++QIWD SSGNLKCTLEGPGGG+EWV WHPRGH+VLAGSEDST WMWNADR  YLN+
Sbjct: 125 FDGIIQIWDTSSGNLKCTLEGPGGGIEWVRWHPRGHLVLAGSEDSTAWMWNADRGIYLNI 184

Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
           FSGHG+SVTCGDFTPDGK ICTGSDDAT+R+WNP+SGENIHV+RGHPYHTEGLT L +++
Sbjct: 185 FSGHGASVTCGDFTPDGKIICTGSDDATMRIWNPRSGENIHVVRGHPYHTEGLTSLALTS 244

Query: 247 DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
           DSTLAL+GSKDGSVH+VNI TGKVV+SLVSH+DSIECIG + S
Sbjct: 245 DSTLALTGSKDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPS 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444924|ref|XP_002282186.1| PREDICTED: angio-associated migratory cell protein-like [Vitis vinifera]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/289 (76%), Positives = 250/289 (86%), Gaps = 3/289 (1%)

Query: 1   MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
           MN P +++ ++DQ +VFLDE+DI+ E+ VDDEDLPD +D D    DAE+ E+ DDS HIF
Sbjct: 1   MNTPANHDEDEDQGDVFLDENDIVLEINVDDEDLPDAEDAD---DDAEDVEEADDSMHIF 57

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
           +GH+ E+Y+VACSP D  LVATGGGDDKGF W+I  GDWA E+ GHKDSV SL FSMDGQ
Sbjct: 58  TGHTGELYTVACSPIDPRLVATGGGDDKGFIWKILDGDWAFELGGHKDSVFSLDFSMDGQ 117

Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
           LLASG  DGLV+IWD SSG+LKCTLEGPGGG+EWV WHPRGH+VLAGSED TVWMWNADR
Sbjct: 118 LLASGSFDGLVKIWDASSGDLKCTLEGPGGGIEWVRWHPRGHVVLAGSEDCTVWMWNADR 177

Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
            AYLNMFSGH SSVTCGDFTPDGKTICTGSDDATLR+WNP SGENIHV+RGHPYHTEGLT
Sbjct: 178 GAYLNMFSGHASSVTCGDFTPDGKTICTGSDDATLRIWNPSSGENIHVVRGHPYHTEGLT 237

Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
           CL I++DSTLAL+GSKD SVH+VNITTGKVVSSL SHTDSIECIG S S
Sbjct: 238 CLAITSDSTLALTGSKDSSVHVVNITTGKVVSSLTSHTDSIECIGLSLS 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771302|emb|CAN60774.1| hypothetical protein VITISV_007962 [Vitis vinifera]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/289 (75%), Positives = 252/289 (87%), Gaps = 3/289 (1%)

Query: 1   MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
           MN+P H++ ++DQ +VF+DE+D++ E+TVDDEDLPDV+ +D    DAE+ E+ DDS HIF
Sbjct: 1   MNDPAHHDEDEDQGDVFIDENDVVQEITVDDEDLPDVEGED---DDAEDFEEADDSMHIF 57

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
           +GH+ E+Y+VACSP DA LVATGGGDDKGF W+I  GDWA E+ GHKDSV SL FS DGQ
Sbjct: 58  TGHTGELYTVACSPMDARLVATGGGDDKGFIWKIFDGDWAFELGGHKDSVCSLDFSADGQ 117

Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
           LLASG  DGLV+IWD SSG+LK TLEGPGGG+EWV WHPRGH+VLAGSED TVWMWNADR
Sbjct: 118 LLASGSFDGLVKIWDASSGDLKGTLEGPGGGIEWVRWHPRGHLVLAGSEDCTVWMWNADR 177

Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
           +AYLNMFSGH SSVTCG+FTPDGKTICTGSDDATLR+WNP+SGEN HV+RGHPYHTEGLT
Sbjct: 178 SAYLNMFSGHASSVTCGNFTPDGKTICTGSDDATLRIWNPRSGENTHVVRGHPYHTEGLT 237

Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
           CL I++DSTLAL+GSKD SVH+VNI TGKVVSSL SHTDSIECIG S S
Sbjct: 238 CLAITSDSTLALTGSKDSSVHIVNIATGKVVSSLTSHTDSIECIGLSLS 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738669|emb|CBI27914.3| unnamed protein product [Vitis vinifera]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/291 (76%), Positives = 250/291 (85%), Gaps = 5/291 (1%)

Query: 1   MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
           MN P +++ ++DQ +VFLDE+DI+ E+ VDDEDLPD +D D    DAE+ E+ DDS HIF
Sbjct: 1   MNTPANHDEDEDQGDVFLDENDIVLEINVDDEDLPDAEDAD---DDAEDVEEADDSMHIF 57

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMD 118
           +GH+ E+Y+VACSP D  LVATGGGDDKGF W+I  GDWA E+ G  HKDSV SL FSMD
Sbjct: 58  TGHTGELYTVACSPIDPRLVATGGGDDKGFIWKILDGDWAFELGGMCHKDSVFSLDFSMD 117

Query: 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
           GQLLASG  DGLV+IWD SSG+LKCTLEGPGGG+EWV WHPRGH+VLAGSED TVWMWNA
Sbjct: 118 GQLLASGSFDGLVKIWDASSGDLKCTLEGPGGGIEWVRWHPRGHVVLAGSEDCTVWMWNA 177

Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238
           DR AYLNMFSGH SSVTCGDFTPDGKTICTGSDDATLR+WNP SGENIHV+RGHPYHTEG
Sbjct: 178 DRGAYLNMFSGHASSVTCGDFTPDGKTICTGSDDATLRIWNPSSGENIHVVRGHPYHTEG 237

Query: 239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
           LTCL I++DSTLAL+GSKD SVH+VNITTGKVVSSL SHTDSIECIG S S
Sbjct: 238 LTCLAITSDSTLALTGSKDSSVHVVNITTGKVVSSLTSHTDSIECIGLSLS 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460494|ref|XP_002274841.1| PREDICTED: angio-associated migratory cell protein [Vitis vinifera] gi|296088039|emb|CBI35322.3| unnamed protein product [Vitis vinifera]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/289 (75%), Positives = 251/289 (86%), Gaps = 3/289 (1%)

Query: 1   MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
           MN+P H++ ++DQ +VF+DE+D++ E+TVDDEDLPDV+ +D    DAE+ E+ DDS HIF
Sbjct: 1   MNDPAHHDEDEDQGDVFIDENDVVQEITVDDEDLPDVEGED---DDAEDFEEADDSMHIF 57

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
           +GH+ E+Y+VACSP DA LVATGGGDDKGF W+I  GDWA E+ GHKDSV SL FS DGQ
Sbjct: 58  TGHTGELYTVACSPMDARLVATGGGDDKGFIWKIFDGDWAFELGGHKDSVCSLDFSADGQ 117

Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
           LLASG  DG V+IWD SSG+LK TLEGPGGG+EWV WHPRGH+VLAGSED TVWMWNADR
Sbjct: 118 LLASGSFDGFVKIWDASSGDLKGTLEGPGGGIEWVRWHPRGHLVLAGSEDCTVWMWNADR 177

Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
           +AYLNMFSGH SSVTCG+FTPDGKTICTGSDDATLR+WNP+SGEN HV+RGHPYHTEGLT
Sbjct: 178 SAYLNMFSGHASSVTCGNFTPDGKTICTGSDDATLRIWNPRSGENTHVVRGHPYHTEGLT 237

Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
           CL I++DSTLAL+GSKD SVH+VNI TGKVVSSL SHTDSIECIG S S
Sbjct: 238 CLAITSDSTLALTGSKDSSVHIVNIATGKVVSSLTSHTDSIECIGLSLS 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30698820|ref|NP_177329.2| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|19347844|gb|AAL86002.1| unknown protein [Arabidopsis thaliana] gi|25054983|gb|AAN71963.1| unknown protein [Arabidopsis thaliana] gi|332197118|gb|AEE35239.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/280 (71%), Positives = 239/280 (85%), Gaps = 1/280 (0%)

Query: 10  EDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYS 69
           E+D+ E+FL ESD++ E+ VD+EDLP+ DDDD    D E  ++ DDS H F+GH  E+Y+
Sbjct: 17  EEDEGEIFLGESDVLREIDVDEEDLPEADDDDMD-DDGEQFDENDDSVHTFTGHKGELYA 75

Query: 70  VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129
           +ACSPTDATLVATGGGDDK F W+I  GDWA+E+ GHKDSVS LAFS DGQLLASGGLDG
Sbjct: 76  LACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDGQLLASGGLDG 135

Query: 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189
           +VQI+D SSG LKC L+GPG G+EWV WHPRGHIVLAGSED ++WMWNAD+ AYLNMFSG
Sbjct: 136 VVQIFDASSGTLKCVLDGPGAGIEWVRWHPRGHIVLAGSEDCSLWMWNADKEAYLNMFSG 195

Query: 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249
           H  +VTCGDFTPDGK ICTGSDDA+L VWNPK+ E+IH+++GHPYHTEGLTCL I+++S+
Sbjct: 196 HNLNVTCGDFTPDGKLICTGSDDASLIVWNPKTCESIHIVKGHPYHTEGLTCLDINSNSS 255

Query: 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
           LA+SGSKDGSVH+VNI TGKVVSSL SHTDS+EC+ FS S
Sbjct: 256 LAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPS 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135435|ref|XP_002327217.1| predicted protein [Populus trichocarpa] gi|222835587|gb|EEE74022.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/280 (73%), Positives = 243/280 (86%), Gaps = 8/280 (2%)

Query: 10  EDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYS 69
           EDDQ EVFLD+SDIIHEVTVD+EDLPD        +D ++ +  DDS HIF+GH+ E+Y+
Sbjct: 2   EDDQGEVFLDDSDIIHEVTVDEEDLPD--------ADDDDNDDTDDSMHIFTGHTSELYT 53

Query: 70  VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129
           VACSP D  LVATGGGDDKGF W+I  GDWA+E++GHK+SVSSL FS DGQLLASGG DG
Sbjct: 54  VACSPADPLLVATGGGDDKGFLWKIGLGDWAAELKGHKESVSSLTFSSDGQLLASGGFDG 113

Query: 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189
           +VQIWD SSGNLKC LEGP  G+EWV WHP+GH+VLAGSED TVWMWNAD+ AYLN F+G
Sbjct: 114 IVQIWDASSGNLKCVLEGPDEGIEWVRWHPKGHLVLAGSEDKTVWMWNADKGAYLNSFAG 173

Query: 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249
           H +SVTCGDFTPDGKTICTGSDDA+LR+WNPKSGENIHV+RGHPYHT+GLTCL +S+DST
Sbjct: 174 HEASVTCGDFTPDGKTICTGSDDASLRIWNPKSGENIHVVRGHPYHTDGLTCLALSSDST 233

Query: 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
           LA++GSKD SVH+VNITTG+VVSSLVSH+DS+EC+G + S
Sbjct: 234 LAITGSKDNSVHIVNITTGRVVSSLVSHSDSVECVGLAPS 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146457|ref|XP_002326013.1| predicted protein [Populus trichocarpa] gi|222862888|gb|EEF00395.1| predicted protein [Populus trichocarpa]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/292 (71%), Positives = 245/292 (83%), Gaps = 10/292 (3%)

Query: 1   MNNP---IHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDST 57
           MN P   +H+E EDDQ EVFLD+SDII EV VD+EDLPD         + ++ +  DDS 
Sbjct: 1   MNGPNRSLHDEEEDDQGEVFLDDSDIIDEVAVDEEDLPDA-------DEDDDDDDTDDSM 53

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
           HIF+GH+ E+Y+V+CSPTD  LVATGGGDDKGF W+I  GDWASE++GHKDSVS LAFS 
Sbjct: 54  HIFTGHTGELYTVSCSPTDPLLVATGGGDDKGFLWKIGLGDWASELKGHKDSVSCLAFSS 113

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
           DGQLLASGG DGLVQIWD SSGN KC LEGP  G+EWV WHP+GH+VLAGSED +VWMWN
Sbjct: 114 DGQLLASGGFDGLVQIWDASSGNHKCVLEGPDEGIEWVRWHPKGHLVLAGSEDKSVWMWN 173

Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
           ADR AYLN F+GH +SVTCGDFTPDGKTICTGSDDA+LR+WNPKSGENIHV+RGHPYHT+
Sbjct: 174 ADRGAYLNSFTGHEASVTCGDFTPDGKTICTGSDDASLRIWNPKSGENIHVVRGHPYHTD 233

Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
           GLTCL +S+DSTLA++GSKD SVH+VNIT+G+VVSSL SH+DS+EC+  + S
Sbjct: 234 GLTCLALSSDSTLAITGSKDNSVHIVNITSGRVVSSLASHSDSVECVELAPS 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
TAIR|locus:2012971	407	AT1G71840 "AT1G71840" [Arabido	0.986	0.702	0.671	1.7e-107
UNIPROTKB|Q3SZK1	434	AAMP "Angio-associated migrato	0.751	0.502	0.411	5.6e-45
UNIPROTKB|Q7YR70	435	AAMP "Angio-associated migrato	0.751	0.501	0.411	7.1e-45
UNIPROTKB|Q5RCG7	434	AAMP "Angio-associated migrato	0.751	0.502	0.411	9.1e-45
UNIPROTKB|Q13685	434	AAMP "Angio-associated migrato	0.751	0.502	0.411	9.1e-45
RGD|1306281	435	Aamp "angio-associated, migrat	0.751	0.501	0.411	9.1e-45
UNIPROTKB|F1ND84	411	AAMP "Uncharacterized protein"	0.762	0.537	0.397	1.2e-44
UNIPROTKB|F1P1L6	408	AAMP "Uncharacterized protein"	0.762	0.541	0.397	1.2e-44
ZFIN|ZDB-GENE-040426-2370	420	aamp "angio-associated, migrat	0.775	0.535	0.384	3.6e-41
UNIPROTKB|I3L988	411	AAMP "Uncharacterized protein"	0.758	0.535	0.396	2.9e-39

TAIR|locus:2012971 AT1G71840 "AT1G71840" [Arabidopsis thaliana (taxid:3702)]

 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 194/289 (67%), Positives = 232/289 (80%)

Query:     1 MNNPIHNEVEDDQREVFLDESDIIHEVTVXXXXXXXXXXXXXXXXXAENTEQPDDSTHIF 60
             MNN +  E E+D+ E+FL ESD++ E+ V                  E  ++ DDS H F
Sbjct:    10 MNN-LAME-EEDEGEIFLGESDVLREIDVDEEDLPEADDDDMDDD-GEQFDENDDSVHTF 66

Query:    61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
             +GH  E+Y++ACSPTDATLVATGGGDDK F W+I  GDWA+E+ GHKDSVS LAFS DGQ
Sbjct:    67 TGHKGELYALACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDGQ 126

Query:   121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
             LLASGGLDG+VQI+D SSG LKC L+GPG G+EWV WHPRGHIVLAGSED ++WMWNAD+
Sbjct:   127 LLASGGLDGVVQIFDASSGTLKCVLDGPGAGIEWVRWHPRGHIVLAGSEDCSLWMWNADK 186

Query:   181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
              AYLNMFSGH  +VTCGDFTPDGK ICTGSDDA+L VWNPK+ E+IH+++GHPYHTEGLT
Sbjct:   187 EAYLNMFSGHNLNVTCGDFTPDGKLICTGSDDASLIVWNPKTCESIHIVKGHPYHTEGLT 246

Query:   241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
             CL I+++S+LA+SGSKDGSVH+VNI TGKVVSSL SHTDS+EC+ FS S
Sbjct:   247 CLDINSNSSLAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPS 295

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q3SZK1 AAMP "Angio-associated migratory cell protein" [Bos taurus (taxid:9913)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 91/221 (41%), Positives = 124/221 (56%)

Query:    51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
             E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKDSV
Sbjct:    78 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 137

Query:   111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
             +   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+ D
Sbjct:   138 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 195

Query:   171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
                WMW          F G     TCG   PDGK    G +D T+R+W+ K G +IHV++
Sbjct:   196 GNTWMWKVPTGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGNSIHVLK 254

Query:   231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
             G   H   LTC+  + D +L L+GS D    +V+ TTGKVV
Sbjct:   255 GTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKVV 295

GO:0045766 "positive regulation of angiogenesis" evidence=NAS

GO:0010595 "positive regulation of endothelial cell migration" evidence=IMP

GO:0014909 "smooth muscle cell migration" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

UNIPROTKB|Q7YR70 AAMP "Angio-associated migratory cell protein" [Canis lupus familiaris (taxid:9615)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 91/221 (41%), Positives = 123/221 (55%)

Query:    51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
             E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKDSV
Sbjct:    79 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 138

Query:   111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
             +   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+ D
Sbjct:   139 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 196

Query:   171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
                WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV++
Sbjct:   197 GNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHVLK 255

Query:   231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
             G   H   LTC+  + D +L L+GS D    +V+ TTGKVV
Sbjct:   256 GTEGHQGPLTCVATNQDGSLILTGSVDCQAQLVSATTGKVV 296

GO:0014909 "smooth muscle cell migration" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0010595 "positive regulation of endothelial cell migration" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

UNIPROTKB|Q5RCG7 AAMP "Angio-associated migratory cell protein" [Pongo abelii (taxid:9601)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 91/221 (41%), Positives = 123/221 (55%)

Query:    51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
             E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKDSV
Sbjct:    78 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 137

Query:   111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
             +   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+ D
Sbjct:   138 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 195

Query:   171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
                WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV++
Sbjct:   196 GNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHVLK 254

Query:   231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
             G   H   LTC+  + D +L L+GS D    +V+ TTGKVV
Sbjct:   255 GTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKVV 295

GO:0009986 "cell surface" evidence=ISS

GO:0010595 "positive regulation of endothelial cell migration" evidence=ISS

GO:0014909 "smooth muscle cell migration" evidence=ISS

UNIPROTKB|Q13685 AAMP "Angio-associated migratory cell protein" [Homo sapiens (taxid:9606)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 91/221 (41%), Positives = 123/221 (55%)

Query:    51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
             E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKDSV
Sbjct:    78 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 137

Query:   111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
             +   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+ D
Sbjct:   138 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 195

Query:   171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
                WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV++
Sbjct:   196 GNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHVLK 254

Query:   231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
             G   H   LTC+  + D +L L+GS D    +V+ TTGKVV
Sbjct:   255 GTEGHQGPLTCVAANQDGSLILTGSVDCQAKLVSATTGKVV 295

GO:0030154 "cell differentiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0014909 "smooth muscle cell migration" evidence=IEP

GO:0010595 "positive regulation of endothelial cell migration" evidence=ISS

GO:0009986 "cell surface" evidence=IDA

GO:0001525 "angiogenesis" evidence=NAS

GO:0008201 "heparin binding" evidence=TAS

RGD|1306281 Aamp "angio-associated, migratory cell protein" [Rattus norvegicus (taxid:10116)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 91/221 (41%), Positives = 123/221 (55%)

Query:    51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
             E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKDSV
Sbjct:    79 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 138

Query:   111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
             +   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+ D
Sbjct:   139 TCAGFSHDSTLVATGDMSGLLKVWQVETKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 196

Query:   171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
                WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV++
Sbjct:   197 GNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGNPIHVLK 255

Query:   231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
             G   H   LTC+  + D +L L+GS D    +V+ TTGKVV
Sbjct:   256 GTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKVV 296

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0014909 "smooth muscle cell migration" evidence=IEA;ISO

UNIPROTKB|F1ND84 AAMP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 89/224 (39%), Positives = 125/224 (55%)

Query:    48 ENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK 107
             +  E  DDS   FS HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHK
Sbjct:    52 DGMEAQDDSEVTFSLHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECSGHK 111

Query:   108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
             DSV+   FS D   +A+G + GL+++W   +     + E   G +EW+ WHP+ H++LAG
Sbjct:   112 DSVTCAGFSHDSVFVATGDMSGLIKVWRVDTKEEAWSFEV--GDLEWMEWHPQAHVLLAG 169

Query:   168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
             + D   WMW    +     F G     TCG   PDGK    G +D T+R+W+ K G ++H
Sbjct:   170 TADGNSWMWKIP-SGDCKTFQGPACPATCGKILPDGKRAVVGYEDGTMRIWDLKQGTSLH 228

Query:   228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
             V++G   H + LTC+  + D +L L+GS D    +VN  TGKVV
Sbjct:   229 VLKGQDGHQDPLTCVASNQDGSLILTGSVDCHAKLVNSATGKVV 272

GO:0009986 "cell surface" evidence=IEA

GO:0014909 "smooth muscle cell migration" evidence=IEA

UNIPROTKB|F1P1L6 AAMP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 89/224 (39%), Positives = 125/224 (55%)

Query:    48 ENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK 107
             +  E  DDS   FS HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHK
Sbjct:    49 DGMEAQDDSEVTFSLHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECSGHK 108

Query:   108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
             DSV+   FS D   +A+G + GL+++W   +     + E   G +EW+ WHP+ H++LAG
Sbjct:   109 DSVTCAGFSHDSVFVATGDMSGLIKVWRVDTKEEAWSFEV--GDLEWMEWHPQAHVLLAG 166

Query:   168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
             + D   WMW    +     F G     TCG   PDGK    G +D T+R+W+ K G ++H
Sbjct:   167 TADGNSWMWKIP-SGDCKTFQGPACPATCGKILPDGKRAVVGYEDGTMRIWDLKQGTSLH 225

Query:   228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
             V++G   H + LTC+  + D +L L+GS D    +VN  TGKVV
Sbjct:   226 VLKGQDGHQDPLTCVASNQDGSLILTGSVDCHAKLVNSATGKVV 269

GO:0009986 "cell surface" evidence=IEA

GO:0014909 "smooth muscle cell migration" evidence=IEA

ZFIN|ZDB-GENE-040426-2370 aamp "angio-associated, migratory cell protein" [Danio rerio (taxid:7955)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 88/229 (38%), Positives = 124/229 (54%)

Query:    50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS 109
             +EQ DDS    S H+  V+ V   P   +L  +GG DD+ F WR+  G+   E  GHKDS
Sbjct:    69 SEQ-DDSELTLSRHTGSVFCVRLDPLTNSLAMSGGEDDRAFLWRVCDGEVLLECTGHKDS 127

Query:   110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE 169
             V  + FS D  L ASG + G++++W         + E   G +EW+ WHP   ++LAG  
Sbjct:   128 VVCVGFSSDSALAASGDMSGVIRVWSVEKREEVWSAEV--GDLEWLEWHPCAPVLLAGVA 185

Query:   170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229
             D +VWMW     A    F   G   TCG   PDGK    G +D +LR+W+ K G  I+VI
Sbjct:   186 DGSVWMWKLPSGA-CRTFQSPGCQTTCGRILPDGKRAIVGYEDGSLRLWDLKQGTAIYVI 244

Query:   230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278
             +G   H   LTC++ + +  L LSGS DG   +++ ++GKV+ S  S T
Sbjct:   245 KGQDGHRGALTCVSSNQEGALLLSGSVDGQAKLISSSSGKVLCSFSSQT 293

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|I3L988 AAMP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 90/227 (39%), Positives = 120/227 (52%)

Query:    51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
             E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKDSV
Sbjct:    70 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 129

Query:   111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV---EWVS--W-HPRGHIV 164
             +   FS D  L+A+G + GL+++W   +     + E     V   EW S  W   RG + 
Sbjct:   130 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEVRSSEWDSAPWGRGRGPVX 189

Query:   165 LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224
             LAG+ D   WMW          F G     TCG   PDGK    G +D T+R+W+ K G 
Sbjct:   190 LAGTADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGN 248

Query:   225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
              I+V++G   H   LTC+  + D +L L+GS D    +V+ TTGKVV
Sbjct:   249 AIYVLKGTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKVV 295

GO:0014909 "smooth muscle cell migration" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-51
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-47
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-44
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-37
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	5e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	4e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	7e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.001
smart00017	287	smart00017, OSTEO, Osteopontin	0.002
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  169 bits (430), Expect = 3e-51
 Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 4/234 (1%)

Query: 56  STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF 115
                 GH+  V  VA SP D  L+ATG GD     W +  G+    ++GH   V  +A 
Sbjct: 1   LRRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM 175
           S DG  LASG  D  +++WD  +G    TL G    V  V++ P G I+ + S D T+ +
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119

Query: 176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
           W+ +    L    GH   V    F+PDG  + + S D T+++W+ ++G+ +  + G   H
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG---H 176

Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
           T  +  +  S D    LS S DG++ + +++TGK + +L  H + +  + FS  
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  158 bits (402), Expect = 6e-47
 Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 4/236 (1%)

Query: 52  QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS 111
           +  +      GH+  V  VA S  D T +A+G  D     W +  G+    + GH   VS
Sbjct: 39  ETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97

Query: 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171
           S+AFS DG++L+S   D  +++WD  +G    TL G    V  V++ P G  V + S+D 
Sbjct: 98  SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
           T+ +W+      +   +GH   V    F+PDG+ + + S D T+++W+  +G+ +  +RG
Sbjct: 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG 217

Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
           H     G+  +  S D  L  SGS+DG++ + ++ TG+ V +L  HT+S+  + +S
Sbjct: 218 H---ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS 270

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  150 bits (381), Expect = 7e-44
 Identities = 71/204 (34%), Positives = 109/204 (53%), Gaps = 4/204 (1%)

Query: 57  THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
               +GH+  V SVA SP D  ++++   D     W +  G   + ++GH D V+S+AFS
Sbjct: 86  VRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS 144

Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
            DG  +AS   DG +++WD  +G    TL G  G V  V++ P G  +L+ S D T+ +W
Sbjct: 145 PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT 236
           +      L    GH + V    F+PDG  + +GS+D T+RVW+ ++GE +  + G   HT
Sbjct: 205 DLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG---HT 261

Query: 237 EGLTCLTISADSTLALSGSKDGSV 260
             +T L  S D     SGS DG++
Sbjct: 262 NSVTSLAWSPDGKRLASGSADGTI 285

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  132 bits (334), Expect = 7e-37
 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 1/163 (0%)

Query: 57  THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
                GH+D V SVA SP   T VA+   D     W +  G   + + GH   V+S+AFS
Sbjct: 128 LTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186

Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
            DG+ L S   DG +++WD S+G    TL G   GV  V++ P G+++ +GSED T+ +W
Sbjct: 187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
           +      +   SGH +SVT   ++PDGK + +GS D T+R+W+
Sbjct: 247 DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  111 bits (278), Expect = 6e-28
 Identities = 80/236 (33%), Positives = 124/236 (52%), Gaps = 5/236 (2%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
               GHS+ V S+A SP    L +    D     W +  G   S + GH D VSSLAFS 
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208

Query: 118 DGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
           DG  L+ASG  DG +++WD S+G L  +           S+ P G ++ +GS D T+ +W
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW 268

Query: 177 NADRAAY-LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
           +   ++  L   SGH SSV    F+PDGK + +GS D T+R+W+ ++G+ +  +     H
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL-KGH 327

Query: 236 TEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290
              ++ L+ S D S L   GS DG++ + ++ TGK + +L  H  ++  + FS   
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDG 382

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  106 bits (265), Expect = 4e-26
 Identities = 82/239 (34%), Positives = 130/239 (54%), Gaps = 10/239 (4%)

Query: 56  STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQGHKDSVSSLA 114
                +GH+D V S+A SP    L+A+G  D     W ++ G    S + GH DSV S +
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-S 248

Query: 115 FSMDGQLLASGGLDGLVQIWD-PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173
           FS DG LLASG  DG +++WD  SS +L  TL G    V  V++ P G ++ +GS D TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 174 WMWNAD--RAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGENIHVIR 230
            +W+ +  +        GH   V+   F+PDG  + +G SDD T+R+W+ ++G+ +  + 
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
           GH      +  ++ S D  +  SGS DG+V + +++TG ++ +L  HT  +  + FS  
Sbjct: 369 GH----SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD 423

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 86.7 bits (213), Expect = 4e-19
 Identities = 71/181 (39%), Positives = 97/181 (53%), Gaps = 5/181 (2%)

Query: 49  NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--IQGH 106
           +           SGHS  V SVA SP    L A+G  D     W +  G   S   ++GH
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL-ASGSSDGTVRLWDLETGKLLSSLTLKGH 327

Query: 107 KDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL 165
           +  VSSL+FS DG LL SGG  DG +++WD  +G    TLEG    +  VS+ P G +V 
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS-VSFSPDGRVVS 386

Query: 166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225
           +GS D TV +W+    + L    GH S VT  DF+PDGK++ +GS D T+R+W+ K+   
Sbjct: 387 SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446

Query: 226 I 226
            
Sbjct: 447 S 447

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 76.3 bits (186), Expect = 1e-15
 Identities = 62/190 (32%), Positives = 110/190 (57%), Gaps = 12/190 (6%)

Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-----NLKCTLEGPGGGVEWV 155
             ++GH+DS++S+AFS DG+LL SG  DG +++WD  +G     +L+   +     +   
Sbjct: 59  LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118

Query: 156 SWHPRGHIVLAGSEDSTVWMWN-ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA 213
           S      ++ + S D TV +W+ +     +    GH  SVT   F+PDGK + +GS  D 
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178

Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKVVS 272
           T+++W+ ++G+ +  + G   HT+ ++ L  S D   L  SGS DG++ + +++TGK++ 
Sbjct: 179 TIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR 235

Query: 273 SLVS-HTDSI 281
           S +S H+DS+
Sbjct: 236 STLSGHSDSV 245

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 67.4 bits (163), Expect = 1e-12
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 13/153 (8%)

Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GH   V S++ SP  + LV+ G  D     W +  G     ++GH  +V S++FS DG
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDG 382

Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
           ++++SG  DG V++WD S+G+L   L+G    V  + + P G  + +GS D+T+ +W+  
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212
                       +S+    F+PDGK + + S D
Sbjct: 443 ------------TSLKSVSFSPDGKVLASKSSD 463

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.0 bits (154), Expect = 1e-11
 Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 14/192 (7%)

Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
              +  S+ SL  S  G LL +   D LV + D SS      L G    +  +++ P G 
Sbjct: 23  PSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSS----LLLRGHEDSITSIAFSPDGE 78

Query: 163 IVLAGSEDSTVWMWNAD--RAAYLNMFSGHGSSVTCGDF-TPDGKTI--CTGSDDATLRV 217
           ++L+GS D T+ +W+ D       ++   H SSV+     +PDG +I   + S D T+++
Sbjct: 79  LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138

Query: 218 WNPKS-GENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVSSLV 275
           W+  + G+ I  + G   H+E +T L  S D   LA   S DG++ + ++ TGK +S+L 
Sbjct: 139 WDLSTPGKLIRTLEG---HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195

Query: 276 SHTDSIECIGFS 287
            HTD +  + FS
Sbjct: 196 GHTDPVSSLAFS 207

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
            ++GH   V+S+AFS DG LLASG  DG V++WD
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
             ++GH   V+S+AFS DG+ LASG  DG +++WD
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHT-EGLTCLTI 244
             GH  S+T   F+PDG+ + +GS D T+++W+  +GE  I  + G    +   L   + 
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 245 SADSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDSIECIGFSRSE 290
             +S L  S S DG+V + +++T GK++ +L  H++S+  + FS   
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
           L    GH   VT   F+PDGK + +GSDD T+++W+
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
           L    GH   VT   F+PDG  + +GSDD T+RVW+
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 9/137 (6%)

Query: 105 GHKDSVSSLAFS-MDGQLLASGGLDGLVQIWDPSSGNLKCT-------LEGPGGGVEWVS 156
           G +  +  +AF+  D Q L +   DG +  W      L          L+G    V  VS
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 157 WHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215
           +HP    VLA +  D  V +W+ +R   + +   H   +T  ++  DG  +CT S D  L
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Query: 216 RVWNPKSGENIHVIRGH 232
            + +P+ G  +  +  H
Sbjct: 193 NIIDPRDGTIVSSVEAH 209

Length = 493

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 62  GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL 121
           GH+ +V  V+  P+   ++A+ G D     W + +G     I+ H D ++SL +++DG L
Sbjct: 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182

Query: 122 LASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
           L +   D  + I DP  G +  ++E     
Sbjct: 183 LCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 63  HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQL 121
           H   V+S+  S  D TL+A+G  D     W INQG     I+  K ++  + F  + G+ 
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRS 632

Query: 122 LASGGLDGLVQIWDPSSGNLK-CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
           LA G  D  V  +D  +  L  CT+ G    V +V +     +V + S D+T+ +W+   
Sbjct: 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLV-SSSTDNTLKLWDLSM 691

Query: 181 AAY------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
           +        L+ F GH +       +     I TGS+   + V++
Sbjct: 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
           SG L  TL+G  G V  V++ P G  + +GS+D T+ +W+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 38/193 (19%), Positives = 88/193 (45%), Gaps = 19/193 (9%)

Query: 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSS----------GNLKCTLEGPGGGVEWVSWHP 159
           V ++ F  DG+  A+ G++  ++I++  S            ++        G+ W S+  
Sbjct: 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK 545

Query: 160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVW 218
               V + + +  V +W+  R+  +     H   V   D++  D   + +GSDD ++++W
Sbjct: 546 SQ--VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW 603

Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSVHMVNITTGKV-VSSLVS 276
           +   G +I  I+        + C+   ++S  +L+ GS D  V+  ++   K+ + +++ 
Sbjct: 604 SINQGVSIGTIKT----KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG 659

Query: 277 HTDSIECIGFSRS 289
           H+ ++  + F  S
Sbjct: 660 HSKTVSYVRFVDS 672

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
           G L  TL+G  G V  V++ P G+++ +GS+D TV +W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 24/144 (16%)

Query: 168 SEDSTVWMWN-------ADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDDATLRVWN 219
           SED T+  W         + +  +    GH   V    F P    +  +   D  + VW+
Sbjct: 95  SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154

Query: 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT- 278
            + G+ + VI+ H   ++ +T L  + D +L  + SKD  +++++   G +VSS+ +H  
Sbjct: 155 VERGKAVEVIKCH---SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS 211

Query: 279 ------------DSIECIGFSRSE 290
                       D I  +G S+S+
Sbjct: 212 AKSQRCLWAKRKDLIITLGCSKSQ 235

Length = 493

>gnl|CDD|214472 smart00017, OSTEO, Osteopontin

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 24/75 (32%), Positives = 35/75 (46%)

Query: 8   EVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEV 67
           E +D ++E    +S+  HE T D +D  D D  DD  +D+++ E  DDS      H  + 
Sbjct: 49  ETDDFKQETLPSKSNESHEHTDDLDDDDDDDHVDDRDNDSDDAEDSDDSDESDESHHSDE 108

Query: 68  YSVACSPTDATLVAT 82
             V   PTDA     
Sbjct: 109 SDVTDFPTDAPATDV 123

Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone. Length = 287

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 13/98 (13%)

Query: 102 EIQGHKDSVSSLAFS-MDGQLLASGGLDGLVQIW-----DPSSGNLK---CTLEGPGGGV 152
           +++GH  S+  L F+    ++LASG  D  +++W     D S   +K   C L+G    +
Sbjct: 69  KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128

Query: 153 EWVSWHPRGHIVLAGSE-DSTVWMW---NADRAAYLNM 186
             + W+P  + ++  S  DS V +W   N  RA  +NM
Sbjct: 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM 166

Length = 568

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.98
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0267	825	consensus Microtubule severing protein katanin p80	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.92
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG0649	325	consensus WD40 repeat protein [General function pr	99.88
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.88
PRK01742	429	tolB translocation protein TolB; Provisional	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG1188	376	consensus WD40 repeat protein [General function pr	99.85
KOG1310	758	consensus WD40 repeat protein [General function pr	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.84
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
PRK03629	429	tolB translocation protein TolB; Provisional	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.83
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.83
KOG4227	609	consensus WD40 repeat protein [General function pr	99.83
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.83
PRK04922	433	tolB translocation protein TolB; Provisional	99.82
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.82
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.81
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
PRK02889	427	tolB translocation protein TolB; Provisional	99.8
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.8
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.8
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG1963	792	consensus WD40 repeat protein [General function pr	99.79
PRK05137	435	tolB translocation protein TolB; Provisional	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG2139	445	consensus WD40 repeat protein [General function pr	99.79
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.78
KOG2321	703	consensus WD40 repeat protein [General function pr	99.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.76
KOG2139	445	consensus WD40 repeat protein [General function pr	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
PRK05137	435	tolB translocation protein TolB; Provisional	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.75
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.75
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.74
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
PRK00178	430	tolB translocation protein TolB; Provisional	99.73
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.73
PRK01029	428	tolB translocation protein TolB; Provisional	99.73
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.73
PRK02889	427	tolB translocation protein TolB; Provisional	99.72
PRK04922	433	tolB translocation protein TolB; Provisional	99.72
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.72
PRK04792	448	tolB translocation protein TolB; Provisional	99.71
PRK03629	429	tolB translocation protein TolB; Provisional	99.7
KOG1334	559	consensus WD40 repeat protein [General function pr	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.7
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.66
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.66
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.65
KOG4547	541	consensus WD40 repeat-containing protein [General	99.64
KOG4547	541	consensus WD40 repeat-containing protein [General	99.64
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.64
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.63
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.62
PRK00178	430	tolB translocation protein TolB; Provisional	99.61
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.61
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.6
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.58
PRK04792	448	tolB translocation protein TolB; Provisional	99.57
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.54
KOG1334	559	consensus WD40 repeat protein [General function pr	99.54
KOG2315	566	consensus Predicted translation initiation factor	99.53
PRK01029	428	tolB translocation protein TolB; Provisional	99.52
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.52
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.51
PRK04043	419	tolB translocation protein TolB; Provisional	99.5
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.49
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.48
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.48
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.48
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.46
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.43
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.42
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.42
KOG2315	566	consensus Predicted translation initiation factor	99.41
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.39
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.37
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.37
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.37
PRK04043	419	tolB translocation protein TolB; Provisional	99.36
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.34
COG4946	668	Uncharacterized protein related to the periplasmic	99.33
COG4946	668	Uncharacterized protein related to the periplasmic	99.32
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.32
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.31
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.3
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.3
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.29
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.29
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.27
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.27
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.26
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.26
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.25
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.23
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.23
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.23
KOG2695	425	consensus WD40 repeat protein [General function pr	99.22
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.21
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.2
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.2
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.19
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.18
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.14
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.14
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.13
KOG2314	698	consensus Translation initiation factor 3, subunit	99.13
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.13
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.13
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.12
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.12
KOG2314	698	consensus Translation initiation factor 3, subunit	99.09
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.08
KOG2695	425	consensus WD40 repeat protein [General function pr	99.07
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	99.05
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	99.04
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.01
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	99.0
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.0
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.95
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.95
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.94
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.94
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.93
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.93
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.92
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.92
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.92
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.91
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.91
COG3391	381	Uncharacterized conserved protein [Function unknow	98.9
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.84
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.83
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.82
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.76
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.76
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.75
PRK02888	635	nitrous-oxide reductase; Validated	98.74
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.74
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.71
COG3391	381	Uncharacterized conserved protein [Function unknow	98.68
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.66
KOG3621	726	consensus WD40 repeat-containing protein [General	98.65
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.64
KOG2395	644	consensus Protein involved in vacuole import and d	98.64
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.63
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.62
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.61
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.61
PRK02888	635	nitrous-oxide reductase; Validated	98.59
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.58
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.56
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.55
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.5
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.49
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.48
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.44
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.43
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.41
KOG2395	644	consensus Protein involved in vacuole import and d	98.41
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.4
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.37
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.37
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.35
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.33
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.32
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.32
KOG3621	726	consensus WD40 repeat-containing protein [General	98.32
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.31
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.28
PHA02713	557	hypothetical protein; Provisional	98.26
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.19
PRK13616	591	lipoprotein LpqB; Provisional	98.16
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.15
COG5167	776	VID27 Protein involved in vacuole import and degra	98.14
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.13
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.11
PRK13616	591	lipoprotein LpqB; Provisional	98.11
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.09
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.09
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.07
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	98.05
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.02
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.02
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	98.01
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.0
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.98
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.96
KOG2444	238	consensus WD40 repeat protein [General function pr	97.93
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.92
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.86
PHA03098	534	kelch-like protein; Provisional	97.82
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.79
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.78
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.76
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.73
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.73
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.72
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.67
PHA02790	480	Kelch-like protein; Provisional	97.64
KOG2444	238	consensus WD40 repeat protein [General function pr	97.61
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.61
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.6
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.58
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.55
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.51
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.5
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.47
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.46
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.44
COG5167	776	VID27 Protein involved in vacuole import and degra	97.43
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.35
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.35
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.35
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.32
PRK13684	334	Ycf48-like protein; Provisional	97.28
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.25
PHA02713	557	hypothetical protein; Provisional	97.23
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.17
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.1
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.09
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.07
PRK10115	686	protease 2; Provisional	97.07
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.05
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.03
PRK13684	334	Ycf48-like protein; Provisional	97.02
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.9
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.76
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.75
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.75
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.74
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.73
PHA03098	534	kelch-like protein; Provisional	96.73
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.72
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.7
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.68
COG5276	370	Uncharacterized conserved protein [Function unknow	96.51
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.43
PLN02193	470	nitrile-specifier protein	96.38
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.36
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.36
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.34
PHA02790	480	Kelch-like protein; Provisional	96.33
PLN02153	341	epithiospecifier protein	96.18
KOG2247	615	consensus WD40 repeat-containing protein [General	96.17
PRK10115	686	protease 2; Provisional	96.13
KOG2247	615	consensus WD40 repeat-containing protein [General	96.13
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.12
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	96.12
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	96.03
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.99
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.95
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.94
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.9
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.83
COG5276	370	Uncharacterized conserved protein [Function unknow	95.82
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.81
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.81
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.71
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.71
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.45
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.44
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.42
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	95.37
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.35
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.26
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	95.1
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.07
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.06
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.04
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.95
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	94.77
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.76
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.67
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	94.62
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	94.59
PF12768	281	Rax2: Cortical protein marker for cell polarity	94.53
COG4590	733	ABC-type uncharacterized transport system, permeas	94.52
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.48
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	94.48
PLN02153	341	epithiospecifier protein	94.43
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.42
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.42
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.36
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.29
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.2
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	93.97
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.85
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.72
PLN02193	470	nitrile-specifier protein	93.6
PF12768	281	Rax2: Cortical protein marker for cell polarity	93.25
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	93.16
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.91
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.89
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	92.83
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.8
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.55
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.51
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	92.27
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	92.22
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	92.21
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.05
COG4590	733	ABC-type uncharacterized transport system, permeas	91.91
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.81
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.71
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.29
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	91.1
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	90.98
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	90.87

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.8e-47  Score=299.26  Aligned_cols=235  Identities=23%  Similarity=0.408  Sum_probs=225.8

Q ss_pred             CCCceeeeccCCcCEEEEEECCC-CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      ..+.+++|+||+..|.++.|+|. +...+|||+.||++++|++.+..++..+.+|...|..++|+|+|++|++++.|.+-
T Consensus       206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW  285 (459)
T KOG0272|consen  206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW  285 (459)
T ss_pred             CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccch
Confidence            45788999999999999999996 47789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC
Q 022910          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  211 (290)
                      ++||+.++..+....+|...|.+++|+|+|.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+.
T Consensus       286 RlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~  365 (459)
T KOG0272|consen  286 RLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS  365 (459)
T ss_pred             hhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC
Confidence            99999999999899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      |++++|||++....+.++..   |..-|+.++|+| .|.+|+|++.|+++++|...++.+++++.+|.+.|.++..+||+
T Consensus       366 Dnt~kVWDLR~r~~ly~ipA---H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~  442 (459)
T KOG0272|consen  366 DNTCKVWDLRMRSELYTIPA---HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS  442 (459)
T ss_pred             CCcEEEeeecccccceeccc---ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence            99999999999888887777   889999999999 88999999999999999999999999999999999999999986

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-46  Score=289.78  Aligned_cols=234  Identities=29%  Similarity=0.544  Sum_probs=212.4

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      ...+...+.||.++|.|++|+| .+..|++|+.|.++|+||+.+..+..+.++|...|.|++|+|||+.||+|+.+|+|+
T Consensus       104 vtrCssS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~  182 (480)
T KOG0271|consen  104 VTRCSSSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR  182 (480)
T ss_pred             cceeccccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence            3556777889999999999999 888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCceE-EEEecCCCCEEEEEEcC-----CCCEEEEeeCCCeEEEEECCcccEEEee-------------------
Q 022910          133 IWDPSSGNLK-CTLEGPGGGVEWVSWHP-----RGHIVLAGSEDSTVWMWNADRAAYLNMF-------------------  187 (290)
Q Consensus       133 i~d~~~~~~~-~~~~~~~~~i~~i~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------  187 (290)
                      +||..+++++ ..+.+|...|++++|.|     ..++||+++.||.|+|||+..++++..+                   
T Consensus       183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliy  262 (480)
T KOG0271|consen  183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIY  262 (480)
T ss_pred             EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEE
Confidence            9999998765 67889999999999987     4568899999999999988765432222                   


Q ss_pred             --------------------------------------------------------------------------------
Q 022910          188 --------------------------------------------------------------------------------  187 (290)
Q Consensus       188 --------------------------------------------------------------------------------  187 (290)
                                                                                                      
T Consensus       263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg  342 (480)
T KOG0271|consen  263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG  342 (480)
T ss_pred             ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence                                                                                            


Q ss_pred             ---------------------ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC
Q 022910          188 ---------------------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (290)
Q Consensus       188 ---------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (290)
                                           .+|..-|..+.|+|+++++++++-|..|++|+.++|+.+..+++   |-..|+.++|+.
T Consensus       343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG---Hv~~VYqvawsa  419 (480)
T KOG0271|consen  343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG---HVAAVYQVAWSA  419 (480)
T ss_pred             cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh---ccceeEEEEecc
Confidence                                 34456688899999999999999999999999999999988888   889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          247 DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       247 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      |.++|++|+.|.++++|++++.++...+.+|...|.++.|+|||
T Consensus       420 DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG  463 (480)
T KOG0271|consen  420 DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG  463 (480)
T ss_pred             CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC
Confidence            99999999999999999999999999999999999999999997

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=9e-43  Score=269.41  Aligned_cols=275  Identities=40%  Similarity=0.721  Sum_probs=236.6

Q ss_pred             cccccCCCceeeeeecCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEE
Q 022910           14 REVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWR   93 (290)
Q Consensus        14 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~   93 (290)
                      +|.-++++|.++|+..+++++++.+++..+++++.-...-...+..|..|+.+|.+++.+| +.++++||+.|..-++|+
T Consensus        14 ee~i~d~dd~~~e~~~~~e~E~e~~d~~~ddd~E~~~~~mDdS~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~   92 (399)
T KOG0296|consen   14 EEEILDEDDVAQEMVVDEEDENEQDDEMMDDDEEALEVDMDDSLVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWD   92 (399)
T ss_pred             cccCCCchhhhhhcccccccccchhccccCCchHHhhcccccceeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEE
Confidence            3334666666666665555555443333222222111111788999999999999999999 889999999999999999


Q ss_pred             ccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeE
Q 022910           94 INQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV  173 (290)
Q Consensus        94 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i  173 (290)
                      +.++.....+.+|+..|+++.|+.+|.+||+|..+|.|+||...++.....+......|.-+.|||.+..|+.|+.||.+
T Consensus        93 ~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsv  172 (399)
T KOG0296|consen   93 ISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSV  172 (399)
T ss_pred             ccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcE
Confidence            99999999999999999999999999999999999999999999999888887666779999999999999999999999


Q ss_pred             EEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC--------------------
Q 022910          174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--------------------  233 (290)
Q Consensus       174 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------  233 (290)
                      .+|.+.++...+.+.+|+.++++=.|.|+|+.++++..||+|++|++++++++..+....                    
T Consensus       173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~  252 (399)
T KOG0296|consen  173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN  252 (399)
T ss_pred             EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence            999999988899999999999999999999999999999999999999988776654110                    


Q ss_pred             ------------------------------------------------------------------------CcccCeEE
Q 022910          234 ------------------------------------------------------------------------YHTEGLTC  241 (290)
Q Consensus       234 ------------------------------------------------------------------------~~~~~v~~  241 (290)
                                                                                              .|..+|+.
T Consensus       253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~  332 (399)
T KOG0296|consen  253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTK  332 (399)
T ss_pred             CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEE
Confidence                                                                                    06778999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          242 LTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +.|.+ ..+|++++.+|.|+.||.++|+++.++.+|..+|.+++++|++
T Consensus       333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~  380 (399)
T KOG0296|consen  333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQK  380 (399)
T ss_pred             EEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCC
Confidence            99998 7899999999999999999999999999999999999999974

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.8e-44  Score=281.68  Aligned_cols=225  Identities=25%  Similarity=0.412  Sum_probs=217.0

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC--CCEEEEEeCCCcEEEEcCCC
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGLVQIWDPSS  138 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~  138 (290)
                      -|-+.+|..+.|++ ++..|+||+.+|.+++|...+...+..+.+|...|.++.|+|.  +..+|+|+.||++++|++.+
T Consensus       172 ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  172 VGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             ccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            35678999999999 8889999999999999999999999999999999999999997  55899999999999999999


Q ss_pred             CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 022910          139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW  218 (290)
Q Consensus       139 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  218 (290)
                      ..++..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|.|+|.++++|+.|..-+||
T Consensus       251 e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW  330 (459)
T KOG0272|consen  251 ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW  330 (459)
T ss_pred             CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             cCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      |++++.++..+.+   |..+|..+.|+|+|..||||+.|++++|||++..+.+.++.+|.+-|+.+.|+|.
T Consensus       331 DlRtgr~im~L~g---H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~  398 (459)
T KOG0272|consen  331 DLRTGRCIMFLAG---HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQ  398 (459)
T ss_pred             ecccCcEEEEecc---cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEeccc
Confidence            9999999999998   8999999999999999999999999999999999999999999999999999984

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.3e-43  Score=293.92  Aligned_cols=232  Identities=25%  Similarity=0.499  Sum_probs=215.7

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      .....+.+.||+++|+.++|+| +.++|++++.|+++|+|.+.+...+..+++|..||+++.|+|.|-|||+++.|++.+
T Consensus       440 ~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr  518 (707)
T KOG0263|consen  440 SSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR  518 (707)
T ss_pred             CCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence            3455667999999999999999 888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      +|......+++.+.+|.+.+.|+.|||+.+|+++|+.|.++++||+.++..++.|.+|.++|.+++|+|+|++|++|+.|
T Consensus       519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed  598 (707)
T KOG0263|consen  519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED  598 (707)
T ss_pred             eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-----------------------
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK-----------------------  269 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-----------------------  269 (290)
                      |.|.+||+.++..+..+.+   |.+.|.++.|+.+|..||+|+.|.+|++||+....                       
T Consensus       599 ~~I~iWDl~~~~~v~~l~~---Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (707)
T KOG0263|consen  599 GLIKIWDLANGSLVKQLKG---HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASS  675 (707)
T ss_pred             CcEEEEEcCCCcchhhhhc---ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCc
Confidence            9999999999999988888   78999999999999999999999999999985321                       


Q ss_pred             -EEEEEccCCCcEEEEEEec
Q 022910          270 -VVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       270 -~~~~~~~~~~~v~~i~~s~  288 (290)
                       ++.++..-..+|.++.|..
T Consensus       676 ~llgs~~tK~tpv~~l~Ftr  695 (707)
T KOG0263|consen  676 LLLGSFYTKNTPVVGLHFTR  695 (707)
T ss_pred             ceeeeeeecCceEEEEEEec
Confidence             4555555566788887753

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.3e-41  Score=256.08  Aligned_cols=236  Identities=24%  Similarity=0.447  Sum_probs=215.2

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee--------------------------------
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--------------------------------   99 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--------------------------------   99 (290)
                      ..-...++|+||.+.|+++.|++ +.++|++++.||.+.|||.-+...                                
T Consensus        43 i~~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C  121 (343)
T KOG0286|consen   43 IQMRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC  121 (343)
T ss_pred             eeeeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence            34556699999999999999999 888999999999999999754322                                


Q ss_pred             ----------------eeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcC-CCC
Q 022910          100 ----------------ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGH  162 (290)
Q Consensus       100 ----------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~  162 (290)
                                      .+.+.+|.+-+.|+.|.+ ..+|+++|.|.+..+||+++++.+..|.+|.+.|.++.++| +++
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n  200 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN  200 (343)
T ss_pred             EEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence                            223457888888888876 55788888899999999999999999999999999999999 999


Q ss_pred             EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEE
Q 022910          163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL  242 (290)
Q Consensus       163 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  242 (290)
                      .+++|+-|+..++||+|.+.+++.|.+|.+.|.+++|.|+|.-|++|+.|++.++||+|..+.+..+.... ...+|+++
T Consensus       201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~-~~~gitSv  279 (343)
T KOG0286|consen  201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS-IICGITSV  279 (343)
T ss_pred             eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc-ccCCceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999888887433 67889999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          243 TISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       243 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +|+..|++|++|..|.++.+||.-.++.+..+.+|.+.|+++..+|||
T Consensus       280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG  327 (343)
T KOG0286|consen  280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG  327 (343)
T ss_pred             EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCC
Confidence            999999999999999999999999999999999999999999999997

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-41  Score=252.52  Aligned_cols=232  Identities=25%  Similarity=0.438  Sum_probs=212.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-----CeeeeeeccccCCEEEEEECCCCCEEEEEeCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLD  128 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  128 (290)
                      ....-++++|++.|+.++..+.+..++++++.|.++.+|++..     |..++.+.+|...|..+..+++|++.++++.|
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD   84 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD   84 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence            3456689999999999999997788999999999999999864     67788999999999999999999999999999


Q ss_pred             CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC-CCCeEEEEEcCC--CCE
Q 022910          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-GSSVTCGDFTPD--GKT  205 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~--~~~  205 (290)
                      +.+++||+.+++..+.|.+|...|.+++|+++.+.+++|+.|.+|++|++............ ...|.|++|+|+  ..+
T Consensus        85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI  164 (315)
T ss_pred             ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence            99999999999999999999999999999999999999999999999999766544443332 789999999997  689


Q ss_pred             EEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG  285 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~  285 (290)
                      |++++.|++|++||+++.+....+.+   |...++.++++|||.++++|+.||.+.+||++.++.+.++. |...|.+++
T Consensus       165 Ivs~s~DktvKvWnl~~~~l~~~~~g---h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~  240 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNCQLRTTFIG---HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLC  240 (315)
T ss_pred             EEEccCCceEEEEccCCcchhhcccc---ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEE
Confidence            99999999999999999988887777   88999999999999999999999999999999999998886 478999999


Q ss_pred             EecC
Q 022910          286 FSRS  289 (290)
Q Consensus       286 ~s~d  289 (290)
                      |+|+
T Consensus       241 fspn  244 (315)
T KOG0279|consen  241 FSPN  244 (315)
T ss_pred             ecCC
Confidence            9997

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-41  Score=251.04  Aligned_cols=235  Identities=22%  Similarity=0.347  Sum_probs=207.8

Q ss_pred             CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      .-.-+.+++.|+||+-.|..+..++ +++++++++.|+++++||+.+++....|.+|...|.+++|+++++.|++|+.|.
T Consensus        49 d~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk  127 (315)
T KOG0279|consen   49 DIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK  127 (315)
T ss_pred             ccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc
Confidence            3445788999999999999999999 888999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEcCCCCceEEEEecC-CCCEEEEEEcCC--CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEE
Q 022910          130 LVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  206 (290)
                      +|++|++............ ...|.|+.|+|+  ..+|++++.|++|++||+++.+....+.+|.+.++.++++|+|.+.
T Consensus       128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslc  207 (315)
T KOG0279|consen  128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLC  207 (315)
T ss_pred             eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEE
Confidence            9999998765544433332 678999999998  6799999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC---------
Q 022910          207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH---------  277 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---------  277 (290)
                      ++|+.||.+.+||++.++.+..+.    +...|.+++|+|+.-.|+.+ .+..|+|||+.++.++..+..-         
T Consensus       208 asGgkdg~~~LwdL~~~k~lysl~----a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~  282 (315)
T KOG0279|consen  208 ASGGKDGEAMLWDLNEGKNLYSLE----AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAG  282 (315)
T ss_pred             ecCCCCceEEEEEccCCceeEecc----CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccC
Confidence            999999999999999999988877    78899999999987666555 4556999999999888776521         


Q ss_pred             CCcEEEEEEecCC
Q 022910          278 TDSIECIGFSRSE  290 (290)
Q Consensus       278 ~~~v~~i~~s~d~  290 (290)
                      .....+++||+||
T Consensus       283 ~~~clslaws~dG  295 (315)
T KOG0279|consen  283 DPICLSLAWSADG  295 (315)
T ss_pred             CcEEEEEEEcCCC
Confidence            2245688999887

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.1e-41  Score=286.52  Aligned_cols=234  Identities=28%  Similarity=0.477  Sum_probs=216.7

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-------------------------------eee
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-------------------------------WAS  101 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------------------------------~~~  101 (290)
                      |.-+..++..-...++|..|++ +..+||.|-.|..|++|.+...+                               ...
T Consensus       367 pSic~YT~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~  445 (707)
T KOG0263|consen  367 PSICMYTFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR  445 (707)
T ss_pred             CcEEEEEEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence            3334444555567899999999 77799999999999999987311                               223


Q ss_pred             eeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc
Q 022910          102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA  181 (290)
Q Consensus       102 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  181 (290)
                      ++.+|.++|..+.|+|+.++|+++|.|+++|+|.+.+...+..+++|..||+++.|+|.|-+||+++.|++.++|.....
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~  525 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN  525 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910          182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH  261 (290)
Q Consensus       182 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  261 (290)
                      .+++.+.+|.+.|.|+.|+|+..|+++|+.|.+||+||..+|..++.+.+   |.++|++++|+|+|++|++|+.||.|.
T Consensus       526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G---H~~~V~al~~Sp~Gr~LaSg~ed~~I~  602 (707)
T KOG0263|consen  526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG---HKGPVTALAFSPCGRYLASGDEDGLIK  602 (707)
T ss_pred             CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC---CCCceEEEEEcCCCceEeecccCCcEE
Confidence            99999999999999999999999999999999999999999999999988   899999999999999999999999999


Q ss_pred             EEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          262 MVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       262 ~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +||+.+++++..+.+|.+.|.++.||.||
T Consensus       603 iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg  631 (707)
T KOG0263|consen  603 IWDLANGSLVKQLKGHTGTIYSLSFSRDG  631 (707)
T ss_pred             EEEcCCCcchhhhhcccCceeEEEEecCC
Confidence            99999999999999999999999999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=9.7e-40  Score=252.33  Aligned_cols=236  Identities=26%  Similarity=0.441  Sum_probs=224.0

Q ss_pred             CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      ...|.+..+.+.||.+-|.|+++.| +...|++|+.|++++|||+.++++..++.+|...|..+++++...|+++++.|+
T Consensus       137 WHapwKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk  215 (460)
T KOG0285|consen  137 WHAPWKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDK  215 (460)
T ss_pred             ccCcceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCC
Confidence            4457788899999999999999999 889999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  209 (290)
                      .|+.||++..+.++.+.+|-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~  295 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG  295 (460)
T ss_pred             eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988889999


Q ss_pred             eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      +.|++|++||++.++...++..   |...+.+++.+|....+|+++.| .|+-|++..|..+..+.+|++.|.+++-..|
T Consensus       296 S~D~tvrlWDl~agkt~~tlt~---hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD  371 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMITLTH---HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSD  371 (460)
T ss_pred             cCCceEEEeeeccCceeEeeec---ccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccC
Confidence            9999999999999998877776   88899999999999999998877 6999999999999999999999999988777


Q ss_pred             C
Q 022910          290 E  290 (290)
Q Consensus       290 ~  290 (290)
                      |
T Consensus       372 ~  372 (460)
T KOG0285|consen  372 G  372 (460)
T ss_pred             c
Confidence            5

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=7.9e-40  Score=261.42  Aligned_cols=237  Identities=24%  Similarity=0.433  Sum_probs=213.9

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-CeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (290)
                      .|...++.+.||+..|+++.|.|..+.||++++.|+.|+||++-. ++++.++.+|..+|..++|+++|..|++++.|+.
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence            477788999999999999999998889999999999999999987 8899999999999999999999999999999999


Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  209 (290)
                      |++||+++|+++..+.. ...++|+.|+|++ +.|++|+.|+.|+.||+|+++.++.+..|-+.|..+.|-+++++++++
T Consensus       282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            99999999999999884 4468999999998 899999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEcCCCCeeeEEE----------------------------------------------eCCCCcccCeEEEE
Q 022910          210 SDDATLRVWNPKSGENIHVI----------------------------------------------RGHPYHTEGLTCLT  243 (290)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~----------------------------------------------~~~~~~~~~v~~~~  243 (290)
                      +.|+.++||+.+.+-.+..+                                              .++. ..+....+.
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~-vaGys~~v~  439 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS-VAGYSCQVD  439 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee-ccCceeeEE
Confidence            99999999998754322111                                              1111 233456789


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          244 ISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       244 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      |||||.+|++|..+|.+.+||.++-+++..+++|++++..+.|+|.+
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e  486 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE  486 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence            99999999999999999999999999999999999999999999963

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.3e-37  Score=227.56  Aligned_cols=229  Identities=21%  Similarity=0.380  Sum_probs=205.2

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      +.|+..|.+|++.|+++.|.. +++.+++|+.||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++
T Consensus        73 p~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irv  150 (311)
T KOG0315|consen   73 PNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRV  150 (311)
T ss_pred             CCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEE
Confidence            449999999999999999998 88999999999999999999977666666 7899999999999999999999999999


Q ss_pred             EcCCCCceEEEEe-cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc------cEEEeeecCCCCeEEEEEcCCCCEE
Q 022910          134 WDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA------AYLNMFSGHGSSVTCGDFTPDGKTI  206 (290)
Q Consensus       134 ~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l  206 (290)
                      ||+....+...+. ...-+|+++...|+|.+++.+...|..++|++-..      .++.+++.|.+.+..+.+||++++|
T Consensus       151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence            9999886655543 34568999999999999999999999999998654      4667788999999999999999999


Q ss_pred             EEEeCCCeEEEEcCCCC-eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910          207 CTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG  285 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~  285 (290)
                      ++++.|.+++||+..+. +....+.+   |...+..++||.+|.||++|+.|+.+++|++..++.++...+|.....|++
T Consensus       231 at~ssdktv~iwn~~~~~kle~~l~g---h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~  307 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDDFFKLELVLTG---HQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA  307 (311)
T ss_pred             EeecCCceEEEEecCCceeeEEEeec---CCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence            99999999999999887 33444554   788999999999999999999999999999999999999999988888877


Q ss_pred             Ee
Q 022910          286 FS  287 (290)
Q Consensus       286 ~s  287 (290)
                      ..
T Consensus       308 ln  309 (311)
T KOG0315|consen  308 LN  309 (311)
T ss_pred             ee
Confidence            64

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-38  Score=244.88  Aligned_cols=233  Identities=21%  Similarity=0.406  Sum_probs=220.1

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-CeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      ..+....|+||.+.|..++|+. .++++++++.|-.+++||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+|
T Consensus       139 tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ti  217 (406)
T KOG0295|consen  139 TGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTI  217 (406)
T ss_pred             chhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccce
Confidence            4566888999999999999999 889999999999999999987 56777888999999999999999999999999999


Q ss_pred             EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCC---------
Q 022910          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD---------  202 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~---------  202 (290)
                      +.|++.++-++.++.+|...+..++.+.+|.++++++.|.+|++|-+.++++...+..|..+|.+++|.|.         
T Consensus       218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a  297 (406)
T KOG0295|consen  218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA  297 (406)
T ss_pred             eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999873         


Q ss_pred             ------CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          203 ------GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       203 ------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                            +.++++++.|++|++||+.++.++.++.+   |...|..++|+|.|+||+++..|+++++||++++++...+.+
T Consensus       298 t~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g---hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a  374 (406)
T KOG0295|consen  298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG---HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA  374 (406)
T ss_pred             cCCCCCccEEEeecccceEEEEeccCCeEEEEEec---ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence                  25899999999999999999999999998   899999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEEecC
Q 022910          277 HTDSIECIGFSRS  289 (290)
Q Consensus       277 ~~~~v~~i~~s~d  289 (290)
                      |..-|+++.|+.+
T Consensus       375 h~hfvt~lDfh~~  387 (406)
T KOG0295|consen  375 HEHFVTSLDFHKT  387 (406)
T ss_pred             CcceeEEEecCCC
Confidence            9999999999754

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2e-39  Score=254.25  Aligned_cols=231  Identities=25%  Similarity=0.434  Sum_probs=209.8

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      ....+..|..+|+++.|++ ++..+++|+.+|.|++|+.+..........|...|++++|+|+...|++++.||+|+|||
T Consensus       130 FEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd  208 (464)
T KOG0284|consen  130 FETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD  208 (464)
T ss_pred             HHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence            3455678999999999999 888999999999999999876544443344558999999999999999999999999999


Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                      ....+....+.+|.-.|.+++|+|...++++|+.|..|++||.+++.++.++.+|+..|..+.|+|++++|++++.|..+
T Consensus       209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~  288 (464)
T KOG0284|consen  209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSC  288 (464)
T ss_pred             ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceE
Confidence            99999888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cCCCcEEEEEEecCC
Q 022910          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSRSE  290 (290)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~s~d~  290 (290)
                      ++||+++.+.+.++++   |...++++.|+| ...+|.+|+.||.|..|.+...+++..+. +|.+.|++++|+|=|
T Consensus       289 kv~DiR~mkEl~~~r~---Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG  362 (464)
T KOG0284|consen  289 KVFDIRTMKELFTYRG---HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG  362 (464)
T ss_pred             EEEehhHhHHHHHhhc---chhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccc
Confidence            9999998888888887   889999999999 67799999999999999998777777665 799999999999954

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.9e-39  Score=254.30  Aligned_cols=221  Identities=23%  Similarity=0.454  Sum_probs=203.6

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      +-+|..+.|.| .++.|++|+..|.+.+|+...-.....++.|..+|+++.|++++.++++|+.+|.|++|+..-.....
T Consensus        96 kc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             ccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            44789999999 77888899999999999986666566678999999999999999999999999999999987655443


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910          144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (290)
Q Consensus       144 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  223 (290)
                      ....|...|++++|+|+...|++++.||+|+|||....+..+.+.+|.-.|.+++|+|...++++++.|..|++||.+++
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg  254 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG  254 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence            33344488999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      .++.++..   |+..|..+.|+|++++|++++.|..++++|+++.+.+.++++|...|+++.|+|
T Consensus       255 ~cl~tlh~---HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP  316 (464)
T KOG0284|consen  255 SCLATLHG---HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP  316 (464)
T ss_pred             chhhhhhh---ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccc
Confidence            99988887   889999999999999999999999999999999999999999999999999998

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.9e-37  Score=243.31  Aligned_cols=233  Identities=22%  Similarity=0.422  Sum_probs=216.3

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      .++..+.+|..|+++|.++.|+. .+.+|++++.|+++.+||..++.....+..|..+-..+.|-. ...|++++.|+.|
T Consensus       264 ~~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i  341 (524)
T KOG0273|consen  264 KDGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCI  341 (524)
T ss_pred             cCchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceE
Confidence            46777888888999999999999 788999999999999999999999999998988878899964 4568999999999


Q ss_pred             EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC--------
Q 022910          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG--------  203 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------  203 (290)
                      +|+.+....++.++.+|.++|.++.|+|.+.+|++++.|++++||..........+.+|...|+.+.|+|.|        
T Consensus       342 ~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~  421 (524)
T KOG0273|consen  342 HVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM  421 (524)
T ss_pred             EEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999954        


Q ss_pred             -CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEE
Q 022910          204 -KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE  282 (290)
Q Consensus       204 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~  282 (290)
                       ..+++++.|++|++||+..+.++..+..   |..+|.+++|+|+|++||+|+.||.|.+|+++++++++.+.+ ++.|.
T Consensus       422 ~~~l~sas~dstV~lwdv~~gv~i~~f~k---H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~If  497 (524)
T KOG0273|consen  422 NLMLASASFDSTVKLWDVESGVPIHTLMK---HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIF  497 (524)
T ss_pred             CceEEEeecCCeEEEEEccCCceeEeecc---CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEE
Confidence             4689999999999999999999999876   899999999999999999999999999999999999999987 56799


Q ss_pred             EEEEecCC
Q 022910          283 CIGFSRSE  290 (290)
Q Consensus       283 ~i~~s~d~  290 (290)
                      .++|+.+|
T Consensus       498 el~Wn~~G  505 (524)
T KOG0273|consen  498 ELCWNAAG  505 (524)
T ss_pred             EEEEcCCC
Confidence            99999765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=259.93  Aligned_cols=233  Identities=32%  Similarity=0.574  Sum_probs=211.8

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEc-cCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (290)
                      ..+.+.+|...|.+++|+| ++.++++++.|++|+||++ ..+..++++.+|...|++++|+|+++++++|+.|++|+||
T Consensus       195 ~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW  273 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW  273 (456)
T ss_pred             hhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence            5677799999999999999 7889999999999999999 5568899999999999999999999999999999999999


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc--EEEeeecCCCC--eEEEEEcCCCCEEEEEe
Q 022910          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSS--VTCGDFTPDGKTICTGS  210 (290)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~~~~  210 (290)
                      |+.++++...+.+|...|++++|++++++|++++.|+.|++||+.++.  +...+..+...  +++++|+|++.++++++
T Consensus       274 d~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~  353 (456)
T KOG0266|consen  274 DVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS  353 (456)
T ss_pred             eccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence            999999999999999999999999999999999999999999999998  55666665554  99999999999999999


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC-CCcEEEEEEecC
Q 022910          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH-TDSIECIGFSRS  289 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~s~d  289 (290)
                      .|+.+++||++.+..+..+.++......+.+...++.+.++++|+.|+.|++|++.++..+..+.+| ...|..++|+|.
T Consensus       354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~  433 (456)
T KOG0266|consen  354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT  433 (456)
T ss_pred             CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence            9999999999999998888885422124555566779999999999999999999999999999999 889999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.6e-36  Score=241.86  Aligned_cols=221  Identities=25%  Similarity=0.480  Sum_probs=205.4

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      +..|++++|+. ++.+||+|+.+|.++||+.. +..+.++..|.++|.++.|+..|.||++++.|+++.+||..++...+
T Consensus       235 nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  235 NKDVTSLDWNN-DGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             cCCcceEEecC-CCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence            36899999998 88999999999999999965 67788899999999999999999999999999999999999999999


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910          144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (290)
Q Consensus       144 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  223 (290)
                      .+..|..+...+.|-. ...|++++.||.|+++.+....++.++.+|.+.|.+|.|.|.+.+|++++.|++++||.+...
T Consensus       313 ~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~  391 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS  391 (524)
T ss_pred             eeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence            9998988877888874 557999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eeeEEEeCCCCcccCeEEEEEcCCC---------CEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          224 ENIHVIRGHPYHTEGLTCLTISADS---------TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .....+..   |...|..+.|+|.|         ..|++++.|++|++||+..+.++.+|..|..+|.+++|||+|
T Consensus       392 ~~~~~l~~---Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g  464 (524)
T KOG0273|consen  392 NSVHDLQA---HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG  464 (524)
T ss_pred             cchhhhhh---hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC
Confidence            88888877   88899999999854         479999999999999999999999999999999999999986

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.4e-36  Score=229.69  Aligned_cols=236  Identities=24%  Similarity=0.426  Sum_probs=202.4

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc-CCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      ...++..+.||.+.|+.+.|+| ++.+||+|+.|..|.+|++. ..+....+++|.+.|..+.|.++++.|++++.|.+|
T Consensus        36 l~ap~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v  114 (338)
T KOG0265|consen   36 LQAPIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV  114 (338)
T ss_pred             ccchhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence            4567888999999999999999 88999999999999999954 455667788999999999999999999999999999


Q ss_pred             EEEcCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      +.||+++|+.+..++.|..-++.+.-+.-|. ++.+++.||++++||+|+...++++. .+.+++++.|...+..+.+|+
T Consensus       115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sgg  193 (338)
T KOG0265|consen  115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGG  193 (338)
T ss_pred             EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecc
Confidence            9999999999999999999999888554454 66678889999999999998888775 457899999999999999999


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCCC---------------------------------------------c--ccCeEEEE
Q 022910          211 DDATLRVWNPKSGENIHVIRGHPY---------------------------------------------H--TEGLTCLT  243 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~---------------------------------------------~--~~~v~~~~  243 (290)
                      -|+.|++||++.+.....+.++.-                                             |  ....-.++
T Consensus       194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs  273 (338)
T KOG0265|consen  194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS  273 (338)
T ss_pred             ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence            999999999988877777665321                                             0  11123456


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          244 ISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       244 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      |+|++..+.+|+.|..+++||..+...+..+++|.+.|.++.|+|.+
T Consensus       274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e  320 (338)
T KOG0265|consen  274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE  320 (338)
T ss_pred             ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC
Confidence            77777777888888888888888888999999999999999999964

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-36  Score=223.06  Aligned_cols=238  Identities=24%  Similarity=0.363  Sum_probs=212.4

Q ss_pred             CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      .+.|.+....+.+|+++|.++.|+- ++++.++++.|.+|++|+...+.+++++.+|...|..++.+.++..|++|+.|.
T Consensus         3 ~e~ptkr~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk   81 (307)
T KOG0316|consen    3 LELPTKRLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK   81 (307)
T ss_pred             ccCcchhceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCc
Confidence            3567778899999999999999999 888999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc--EEEeee-------------------
Q 022910          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFS-------------------  188 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~-------------------  188 (290)
                      .+.+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|+.|..+++||.++..  +++.+.                   
T Consensus        82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaG  161 (307)
T KOG0316|consen   82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAG  161 (307)
T ss_pred             eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEee
Confidence            99999999999999999999999999999999999999999999999988642  222210                   


Q ss_pred             -------------------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC
Q 022910          189 -------------------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST  249 (290)
Q Consensus       189 -------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  249 (290)
                                         ....+|++++|+++++..++++.|++|++.|-.+|+.+..++++.... .-...+++....
T Consensus       162 S~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e-ykldc~l~qsdt  240 (307)
T KOG0316|consen  162 SVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME-YKLDCCLNQSDT  240 (307)
T ss_pred             ccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce-eeeeeeecccce
Confidence                               135689999999999999999999999999999999999999865333 334456777778


Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEEEccCCCc-EEEEEEecC
Q 022910          250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDS-IECIGFSRS  289 (290)
Q Consensus       250 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~i~~s~d  289 (290)
                      .+++|+.||.|++||+...+++..+..+... |.+++++|.
T Consensus       241 hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~  281 (307)
T KOG0316|consen  241 HVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT  281 (307)
T ss_pred             eEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccC
Confidence            9999999999999999999999999988887 899999984

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-37  Score=238.73  Aligned_cols=235  Identities=26%  Similarity=0.443  Sum_probs=219.9

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      .++...+.+.+|..+|+.+-|+| ...++++++.|++|++||+.++++...+++|...+..++|+..|+++++++.|=.+
T Consensus        96 pRp~l~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~  174 (406)
T KOG0295|consen   96 PRPNLVQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSA  174 (406)
T ss_pred             CCCCchhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence            34577888999999999999999 88899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910          132 QIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       132 ~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      ++||..+ .+++..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-+++++.+|...|..++.+.+|.++++++
T Consensus       175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s  254 (406)
T KOG0295|consen  175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS  254 (406)
T ss_pred             hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence            9999987 566777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC---------------CCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD---------------STLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      .|.+|++|-+.++++...++.   |..+|-+++|.|.               ++++++++.|++|++||+.++.++.++.
T Consensus       255 ~dqtl~vW~~~t~~~k~~lR~---hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~  331 (406)
T KOG0295|consen  255 NDQTLRVWVVATKQCKAELRE---HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV  331 (406)
T ss_pred             CCceEEEEEeccchhhhhhhc---cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence            999999999999988777777   7888999999762               2599999999999999999999999999


Q ss_pred             cCCCcEEEEEEecCC
Q 022910          276 SHTDSIECIGFSRSE  290 (290)
Q Consensus       276 ~~~~~v~~i~~s~d~  290 (290)
                      +|.+.|++++|+|-|
T Consensus       332 ghdnwVr~~af~p~G  346 (406)
T KOG0295|consen  332 GHDNWVRGVAFSPGG  346 (406)
T ss_pred             cccceeeeeEEcCCC
Confidence            999999999999976

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.3e-36  Score=254.84  Aligned_cols=223  Identities=29%  Similarity=0.544  Sum_probs=204.2

Q ss_pred             eeeeccC-CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           57 THIFSGH-SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        57 ~~~~~~h-~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ...+.+| ...|.++.|+| ++..+++++.++.+++|+....+  ....+.+|...|.+++|+|+++++++++.|++|+|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI  229 (456)
T ss_pred             eeeecccccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence            5555554 88999999999 67779999999999999997777  67777889999999999999999999999999999


Q ss_pred             EcC-CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          134 WDP-SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       134 ~d~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      ||+ ..+..++++++|...|++++|+|+++++++|+.|++|++||+++++++..+.+|..+|++++|++++++|++++.|
T Consensus       230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence            999 5558889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEcCCCCe--eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcE
Q 022910          213 ATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI  281 (290)
Q Consensus       213 g~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v  281 (290)
                      +.|++||+.++.  +...+....... .+++++|+|++.+|++++.|+.+++|++..++.+..+.+|...+
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~  379 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV  379 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcc
Confidence            999999999998  456666654344 79999999999999999999999999999999999999988754

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=4e-35  Score=250.11  Aligned_cols=231  Identities=17%  Similarity=0.283  Sum_probs=194.1

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-------eeeeeeccccCCEEEEEECCCC-CEEEEEeCCC
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDG  129 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg  129 (290)
                      ..+.||.+.|++++|+|.++.+|++|+.|++|++|++.++       ..+..+.+|...|.+++|+|.+ ++|++++.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            4578999999999999976789999999999999999764       3466788999999999999975 6999999999


Q ss_pred             cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCC-eEEEEEcCCCCEEEE
Q 022910          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS-VTCGDFTPDGKTICT  208 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~  208 (290)
                      +|+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+.+|... +..+.|.+++..+++
T Consensus       149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT  228 (493)
T ss_pred             EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence            9999999999999999999999999999999999999999999999999999999888888764 456788988777776


Q ss_pred             Ee----CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEEEcc-CCCcEE
Q 022910          209 GS----DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVVSSLVS-HTDSIE  282 (290)
Q Consensus       209 ~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~-~~~~v~  282 (290)
                      ++    .|+.|++||+++........... ....+....|++++++|++|+ .|+.|++|++.+++++..... +..++.
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~  307 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHK  307 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCc
Confidence            54    47899999998765433222111 334566678899999999887 599999999999998877654 456788


Q ss_pred             EEEEecC
Q 022910          283 CIGFSRS  289 (290)
Q Consensus       283 ~i~~s~d  289 (290)
                      +++|.|.
T Consensus       308 g~~~~pk  314 (493)
T PTZ00421        308 GLCMMPK  314 (493)
T ss_pred             ceEeccc
Confidence            8888874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=8.6e-36  Score=224.76  Aligned_cols=206  Identities=29%  Similarity=0.506  Sum_probs=193.6

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC-CCCEEEEEeCCCcEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQ  132 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~  132 (290)
                      ....+.+.+|++-+.|+.|.+ ++ .|+|++.|.+..+||+++++.+..+.+|.+.|.++.++| +++.+++|+.|+..+
T Consensus       135 ~~v~r~l~gHtgylScC~f~d-D~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak  212 (343)
T KOG0286|consen  135 VRVSRELAGHTGYLSCCRFLD-DN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK  212 (343)
T ss_pred             ceeeeeecCccceeEEEEEcC-CC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence            456678999999999999997 54 566999999999999999999999999999999999999 899999999999999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec--CCCCeEEEEEcCCCCEEEEEe
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      |||++.+...++|.+|...|+++.|.|+|.-|++|+.|++.++||+|..+.+..+..  ...+|++++|+..|++|++|.
T Consensus       213 lWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy  292 (343)
T KOG0286|consen  213 LWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY  292 (343)
T ss_pred             eeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence            999999999999999999999999999999999999999999999999888877764  346899999999999999999


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  264 (290)
                      .|.++.+||.-.++.+..+.+   |...|+++..+|||.-|++|+.|.+++||.
T Consensus       293 ~d~~c~vWDtlk~e~vg~L~G---HeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  293 DDFTCNVWDTLKGERVGVLAG---HENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cCCceeEeeccccceEEEeec---cCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999999999999988   899999999999999999999999999994

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.1e-35  Score=236.12  Aligned_cols=230  Identities=32%  Similarity=0.607  Sum_probs=212.1

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (290)
                      ++.+++|.++|++++|+| ++.+|++++.+|.+++|++.+++....+..|...+..+.|+|++++|++++.+|.|++|++
T Consensus         2 ~~~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL   80 (289)
T ss_pred             chHhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence            457789999999999999 6788999999999999999998888888889999999999999999999999999999999


Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  216 (290)
                      .+++.+..+..|...+.++.|++++.++++++.+|.|++|++++++....+..|...+.+++|+|++.++++++.++.|+
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~  160 (289)
T cd00200          81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK  160 (289)
T ss_pred             CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence            99888888888888999999999988899888899999999998888888888999999999999988888888899999


Q ss_pred             EEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +||+++++....+..   +...+.++.|+|+++.|++++.+|.|++||+++++.+..+..|...|.+++|+|++
T Consensus       161 i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  231 (289)
T cd00200         161 LWDLRTGKCVATLTG---HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG  231 (289)
T ss_pred             EEEccccccceeEec---CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC
Confidence            999998888777775   67789999999999999999999999999999999999998899999999999863

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.8e-36  Score=244.17  Aligned_cols=239  Identities=20%  Similarity=0.301  Sum_probs=193.6

Q ss_pred             CCCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---------------------------eee
Q 022910           49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------------------------WAS  101 (290)
Q Consensus        49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------------------------~~~  101 (290)
                      ....|......|.+|+..|.++++.| .+..|++|+.|-+|++||+....                           .+.
T Consensus       152 ~~~IP~shEi~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iL  230 (641)
T KOG0772|consen  152 IKLIPGSHEIQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQIL  230 (641)
T ss_pred             hhcCCccceEeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEE
Confidence            44578999999999999999999999 78889999999999999985321                           000


Q ss_pred             e--------------------------------eccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCCCCc-eEEEEec
Q 022910          102 E--------------------------------IQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGN-LKCTLEG  147 (290)
Q Consensus       102 ~--------------------------------~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~  147 (290)
                      .                                -++|...++|.+|+|..+ .|++++.||+++||++...+ .++.++.
T Consensus       231 vvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~  310 (641)
T KOG0772|consen  231 VVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT  310 (641)
T ss_pred             EEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence            0                                057899999999999765 79999999999999997654 3333332


Q ss_pred             -----CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---EEEeeecCCC--CeEEEEEcCCCCEEEEEeCCCeEEE
Q 022910          148 -----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGS--SVTCGDFTPDGKTICTGSDDATLRV  217 (290)
Q Consensus       148 -----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i  217 (290)
                           ..-+++.++|++++++||+|+.||.|.+|+.....   ....-.+|..  .|+||.||++|++|++-+.|+++++
T Consensus       311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV  390 (641)
T ss_pred             ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence                 22378999999999999999999999999986542   2233345655  8999999999999999999999999


Q ss_pred             EcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          218 WNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSK------DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       218 ~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      ||+++.+. +....+.. ...+-+.++|||+.++|++|+.      .|.+.+||..+...+.++......|..+.|+|.
T Consensus       391 WDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk  468 (641)
T KOG0772|consen  391 WDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK  468 (641)
T ss_pred             eeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence            99998654 33333332 4455678899999999999865      578999999999999999888889999999983

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.2e-35  Score=218.01  Aligned_cols=235  Identities=19%  Similarity=0.325  Sum_probs=204.5

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (290)
                      .+.+.++++...+.|+.+...| ++..||+++ ...||+||++++.  ++.++.+|...|+++.|..+|+++++|+.||+
T Consensus        29 tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt  106 (311)
T KOG0315|consen   29 TGICSRTIQHPDSQVNRLEITP-DKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT  106 (311)
T ss_pred             cCeEEEEEecCccceeeEEEcC-Ccchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence            4677788888888999999999 777887776 4789999999864  57889999999999999999999999999999


Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-cCCCCeEEEEEcCCCCEEEEE
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTG  209 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~  209 (290)
                      ++|||++...+.+.++ +.++|+++..+|+...|++|..+|.|++||+....+...+. ....+|+++...|+|.+|+++
T Consensus       107 ~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~  185 (311)
T KOG0315|consen  107 VKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA  185 (311)
T ss_pred             EEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe
Confidence            9999999976666665 66899999999999999999999999999999886665543 355789999999999999999


Q ss_pred             eCCCeEEEEcCCCCee---eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEEccCCCcEEEEE
Q 022910          210 SDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIG  285 (290)
Q Consensus       210 ~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~  285 (290)
                      ...|..++|++-+...   +..+...+.|...+..+.+||++++||+++.|.+++||++.+. +....+++|...++..+
T Consensus       186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~  265 (311)
T KOG0315|consen  186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA  265 (311)
T ss_pred             cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence            9999999999876432   2333334458889999999999999999999999999999988 77788899999999999


Q ss_pred             EecCC
Q 022910          286 FSRSE  290 (290)
Q Consensus       286 ~s~d~  290 (290)
                      ||.||
T Consensus       266 FS~dg  270 (311)
T KOG0315|consen  266 FSADG  270 (311)
T ss_pred             eccCc
Confidence            99886

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=216.42  Aligned_cols=226  Identities=28%  Similarity=0.469  Sum_probs=193.9

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC---Ceeeeee-ccccCCEEEEEECCCCCEEEEEeCCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEI-QGHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      ...++.+.+|++.|..++|+|..+.+||+|+.|+.|++|+...   -.+...+ .+|+..|++++|+|.|++|+++|.|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            3457889999999999999994388999999999999999985   2333333 37999999999999999999999999


Q ss_pred             cEEEEcCCCC--ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc---cEEEeeecCCCCeEEEEEcCCCC
Q 022910          130 LVQIWDPSSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       130 ~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~  204 (290)
                      ++.||.-..+  +++..+.+|...|.|++|+++|++||+++.|..|.||.+...   .+...++.|...|..+.|+|...
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED  163 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence            9999986644  678889999999999999999999999999999999998743   57888999999999999999999


Q ss_pred             EEEEEeCCCeEEEEcCCC---CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cCCCc
Q 022910          205 TICTGSDDATLRVWNPKS---GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDS  280 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~  280 (290)
                      +|++++.|.+|++|.-..   ..+..++.+   |...|.+++|++.|..|++++.|++|+||-..+.     +. .|...
T Consensus       164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g---~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~  235 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDG---HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRA  235 (312)
T ss_pred             eeEEeccCCeEEEEeecCCCCeeEEEEecC---ccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccc
Confidence            999999999999998763   345677776   7779999999999999999999999999986522     22 24566


Q ss_pred             EEEEEEe
Q 022910          281 IECIGFS  287 (290)
Q Consensus       281 v~~i~~s  287 (290)
                      ++.++|.
T Consensus       236 ~Y~v~W~  242 (312)
T KOG0645|consen  236 LYDVPWD  242 (312)
T ss_pred             eEeeeec
Confidence            6666665

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-36  Score=236.67  Aligned_cols=207  Identities=27%  Similarity=0.464  Sum_probs=191.8

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEEC-----------CCCC-
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-----------MDGQ-  120 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~-  120 (290)
                      ...++..+.||+.+|+|+.|-  +..++++|+.|++|++|+...|++...+++|...|+.++.+           |.++ 
T Consensus       236 ~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~  313 (480)
T KOG0271|consen  236 LGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK  313 (480)
T ss_pred             CceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccccc
Confidence            456889999999999999997  45799999999999999999999999999999999999877           2233 


Q ss_pred             ------------------------EEEEEeCCCcEEEEcCCCC-ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEE
Q 022910          121 ------------------------LLASGGLDGLVQIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM  175 (290)
Q Consensus       121 ------------------------~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i  175 (290)
                                              .|++|+.|+++.+|+.... +++..+.+|..-|..+.|+|+++++|+++.|..|++
T Consensus       314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkL  393 (480)
T KOG0271|consen  314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKL  393 (480)
T ss_pred             CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceee
Confidence                                    4999999999999997654 578889999999999999999999999999999999


Q ss_pred             EECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe
Q 022910          176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS  255 (290)
Q Consensus       176 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (290)
                      |+.++++.+..+.+|-.+|+.++|+.+.++|++|+.|.++++|++++.+...-+.+   |...|.++.|+|||..+++|+
T Consensus       394 W~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG---h~DEVf~vDwspDG~rV~sgg  470 (480)
T KOG0271|consen  394 WDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG---HADEVFAVDWSPDGQRVASGG  470 (480)
T ss_pred             eeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC---CCceEEEEEecCCCceeecCC
Confidence            99999999999999999999999999999999999999999999999888777777   899999999999999999999


Q ss_pred             CCCcEEEEE
Q 022910          256 KDGSVHMVN  264 (290)
Q Consensus       256 ~dg~i~~wd  264 (290)
                      .|..+++|.
T Consensus       471 kdkv~~lw~  479 (480)
T KOG0271|consen  471 KDKVLRLWR  479 (480)
T ss_pred             CceEEEeec
Confidence            999999994

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.6e-35  Score=244.20  Aligned_cols=230  Identities=28%  Similarity=0.476  Sum_probs=204.6

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      .+...+||...+++++++| +++++|||+.||.|+|||...+-+..++..|+..|+.+.|+..++.+++.+.||+|+.||
T Consensus       342 YVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD  420 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD  420 (893)
T ss_pred             eeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence            4555678999999999999 889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEEecCC-CCEEEEEEcCCCCEEEEeeCCCe-EEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910          136 PSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDST-VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (290)
Q Consensus       136 ~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  213 (290)
                      +...+..+++..+. ....|++..|.|.++++|+.|.. |.+|++++|+.+-.+.+|.+||.+++|+|.+..|++++.|.
T Consensus       421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk  500 (893)
T KOG0291|consen  421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK  500 (893)
T ss_pred             ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence            99999888887654 35678888999999999998875 99999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc----------------
Q 022910          214 TLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS----------------  276 (290)
Q Consensus       214 ~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----------------  276 (290)
                      +|++||+-... .+.++.    +...+..++|.|+|+-|++++.||.|.+||++.+..+.++.+                
T Consensus       501 TVRiW~if~s~~~vEtl~----i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta  576 (893)
T KOG0291|consen  501 TVRIWDIFSSSGTVETLE----IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITA  576 (893)
T ss_pred             eEEEEEeeccCceeeeEe----eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeeh
Confidence            99999987542 345555    677899999999999999999999999999987766544332                


Q ss_pred             ----CCCcEEEEEEecCC
Q 022910          277 ----HTDSIECIGFSRSE  290 (290)
Q Consensus       277 ----~~~~v~~i~~s~d~  290 (290)
                          ....++.|++|+||
T Consensus       577 ~~sa~~K~Ftti~ySaDG  594 (893)
T KOG0291|consen  577 ENSAKGKTFTTICYSADG  594 (893)
T ss_pred             hhcccCCceEEEEEcCCC
Confidence                12578999999987

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-34  Score=243.47  Aligned_cols=230  Identities=20%  Similarity=0.407  Sum_probs=213.3

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC-CcEEEEcC
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-GLVQIWDP  136 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~  136 (290)
                      ..+......|+|.+|++ +..+|++|-..|...+|.+..-.+++.+.-...+|..+.|+..|.+||.|+.. |.+.||+.
T Consensus       259 ~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweW  337 (893)
T KOG0291|consen  259 HYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW  337 (893)
T ss_pred             eeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEe
Confidence            33444458899999999 89999999999999999999999999998888899999999999999998764 89999999


Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  216 (290)
                      .+...+...++|...+++++++|+|.++|+|+.||.|+|||..++-++.++..|.+.|+.+.|+..++.+++++.||+|+
T Consensus       338 qsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVR  417 (893)
T KOG0291|consen  338 QSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVR  417 (893)
T ss_pred             eccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .||+...+..+++...  ......+++..|.|.++.+|+.|. .|++|++++|+++-.+.+|.+||.+++|+|+|
T Consensus       418 AwDlkRYrNfRTft~P--~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~  490 (893)
T KOG0291|consen  418 AWDLKRYRNFRTFTSP--EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG  490 (893)
T ss_pred             eeeecccceeeeecCC--CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc
Confidence            9999999999888864  355678899999999999999887 69999999999999999999999999999975

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.9e-34  Score=232.98  Aligned_cols=237  Identities=24%  Similarity=0.394  Sum_probs=198.7

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec---cccCCEEEEEECCCCCEEEEEeCC
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGGLD  128 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d  128 (290)
                      +|-+....++.|+.-|+|+.|+| ++.+|++.+.||++.+||-.+++.+..+.   +|++.|.+++|+||++.|++++.|
T Consensus       178 PPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD  256 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD  256 (603)
T ss_pred             CCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence            35666777788999999999999 78999999999999999999999999887   899999999999999999999999


Q ss_pred             CcEEEEcCCCCceEEE-------------------------------------------EecCCCCEEEEEEcCCCCEEE
Q 022910          129 GLVQIWDPSSGNLKCT-------------------------------------------LEGPGGGVEWVSWHPRGHIVL  165 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~-------------------------------------------~~~~~~~i~~i~~~~~~~~l~  165 (290)
                      .+++|||+.+.+++.+                                           +.+|...|+++..+|++++|+
T Consensus       257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~  336 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY  336 (603)
T ss_pred             ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence            9999999886654433                                           467888999999999999999


Q ss_pred             EeeCCCeEEEEECCcccEE-------------------------------Eee---------------------------
Q 022910          166 AGSEDSTVWMWNADRAAYL-------------------------------NMF---------------------------  187 (290)
Q Consensus       166 ~~~~dg~i~i~d~~~~~~~-------------------------------~~~---------------------------  187 (290)
                      +|+.||.|.-|+..++..-                               +.+                           
T Consensus       337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d  416 (603)
T KOG0318|consen  337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD  416 (603)
T ss_pred             eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence            9999999999998754210                               000                           


Q ss_pred             ---------------ec--------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEE
Q 022910          188 ---------------SG--------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI  244 (290)
Q Consensus       188 ---------------~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  244 (290)
                                     +.        ..-...+++++|++..+++|+.||.|+||.+............ .|..+|+.+++
T Consensus       417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vay  495 (603)
T KOG0318|consen  417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL-EHRAAITDVAY  495 (603)
T ss_pred             CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee-cccCCceEEEE
Confidence                           00        0123467899999999999999999999999876543332221 28999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cCCCcEEEEEEecCC
Q 022910          245 SADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSRSE  290 (290)
Q Consensus       245 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~s~d~  290 (290)
                      +|++.|||+|...+.+.+||+.+.+.....- -|...|.+++|+|+.
T Consensus       496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n  542 (603)
T KOG0318|consen  496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN  542 (603)
T ss_pred             CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence            9999999999999999999999888744433 499999999999973

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-35  Score=242.87  Aligned_cols=231  Identities=23%  Similarity=0.370  Sum_probs=215.9

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (290)
                      ...+.+..|+..|.++.|+| ....++++-.+|.|.||+.++...++.+....-||++..|-+..+++++|+.|..|+||
T Consensus         4 ~~krk~~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF   82 (794)
T ss_pred             hhhhHhhccCCceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence            34566777999999999999 55666678889999999999999999999889999999999999999999999999999


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcC-CCCEEEEEeCC
Q 022910          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDD  212 (290)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d  212 (290)
                      +..+++.+..|..|...|++++.||..+++++++.|-.|++||-+.. .+.+++.+|...|++++|.| +.+.+++++.|
T Consensus        83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD  162 (794)
T KOG0276|consen   83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD  162 (794)
T ss_pred             ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence            99999999999999999999999999999999999999999998765 67889999999999999999 77899999999


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      ++|+||.+.+..+..++.+   |..+|+++.+-+  |..+|++|+.|.+|+|||.++..+++++.+|...|+.+.|+|.
T Consensus       163 rTVKVWslgs~~~nfTl~g---HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~  238 (794)
T KOG0276|consen  163 RTVKVWSLGSPHPNFTLEG---HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE  238 (794)
T ss_pred             ccEEEEEcCCCCCceeeec---cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC
Confidence            9999999999999999997   899999999988  4579999999999999999999999999999999999999984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.8e-33  Score=227.04  Aligned_cols=231  Identities=32%  Similarity=0.612  Sum_probs=212.0

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      ....+.+|...+..+.|+| ++.++++++.+|.|++|++.+++....+..|...+.++.|+++++++++++.+|.|++|+
T Consensus        43 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~  121 (289)
T cd00200          43 LLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD  121 (289)
T ss_pred             cEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEE
Confidence            6678889999999999999 667888999999999999999888888888999999999999988888888899999999


Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                      +.+++....+..|...+.+++|+|++.++++++.++.|++||+++++.+..+..+...+.++.|+|+++.+++++.++.|
T Consensus       122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i  201 (289)
T cd00200         122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI  201 (289)
T ss_pred             CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence            99998888888888899999999999999988889999999999998888888888899999999999999999999999


Q ss_pred             EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ++||+++++.+..+..   +...+.++.|+|++.++++++.+|.|++|++.+++.+..+..|...|.+++|+|++
T Consensus       202 ~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~  273 (289)
T cd00200         202 KLWDLSTGKCLGTLRG---HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG  273 (289)
T ss_pred             EEEECCCCceecchhh---cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCC
Confidence            9999998887777654   67799999999998899888889999999999999999999999999999999974

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=2.4e-33  Score=240.55  Aligned_cols=232  Identities=16%  Similarity=0.293  Sum_probs=187.0

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe--------eeeeeccccCCEEEEEECCCCCE-EEEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--------WASEIQGHKDSVSSLAFSMDGQL-LASG  125 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~-l~~~  125 (290)
                      .++..+.+|.++|.+++|+|..+.+|++|+.||+|+||++.++.        .+..+.+|...|.+++|+|++.. |+++
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            46788999999999999999667899999999999999997642        33467789999999999999875 5788


Q ss_pred             eCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEE-----EEEc
Q 022910          126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC-----GDFT  200 (290)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~-----~~~~  200 (290)
                      +.|++|+|||+.+++.+..+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+.+.+     ..|+
T Consensus       145 S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs  223 (568)
T PTZ00420        145 GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG  223 (568)
T ss_pred             eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence            999999999999998877776 5567999999999999999999999999999999999999988876533     2345


Q ss_pred             CCCCEEEEEeCCC----eEEEEcCCC-CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          201 PDGKTICTGSDDA----TLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       201 ~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      +++.+|++++.++    .|+|||+++ ..++..+.. ..+...+......+++.++++|+.|+.|++|++..+. +..+.
T Consensus       224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~  301 (568)
T PTZ00420        224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVN  301 (568)
T ss_pred             CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeec
Confidence            8888999887764    799999995 445544432 1133333333445568899999999999999998764 33333


Q ss_pred             c--CCCcEEEEEEecC
Q 022910          276 S--HTDSIECIGFSRS  289 (290)
Q Consensus       276 ~--~~~~v~~i~~s~d  289 (290)
                      .  +..++.+++|.|.
T Consensus       302 ~~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        302 EYKSCSPFRSFGFLPK  317 (568)
T ss_pred             ccccCCCccceEEccc
Confidence            2  4578999999985

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.3e-36  Score=234.55  Aligned_cols=222  Identities=23%  Similarity=0.509  Sum_probs=199.7

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      ....+.+.|.||++.|.|+.|..   .++++|+.|.+|++||+++++++.++-.|...|..+.|+  +.++++++.|.++
T Consensus       225 n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsi  299 (499)
T KOG0281|consen  225 NSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSI  299 (499)
T ss_pred             ccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCcee
Confidence            34678889999999999999965   599999999999999999999999999999999999994  5699999999999


Q ss_pred             EEEcCCCCce---EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE
Q 022910          132 QIWDPSSGNL---KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (290)
Q Consensus       132 ~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  208 (290)
                      .+||+....-   ...+.+|...|+.+.|+  .+++++++.|.+|++|++.++..++++.+|...|.|+.+  .++++++
T Consensus       300 aVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVS  375 (499)
T KOG0281|consen  300 AVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVS  375 (499)
T ss_pred             EEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEe
Confidence            9999987643   34567899999999995  569999999999999999999999999999999999988  5889999


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---------EEEEEccCCC
Q 022910          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK---------VVSSLVSHTD  279 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---------~~~~~~~~~~  279 (290)
                      |+.|.+|++||+..|.++..+.+   |..-|.++.|  +.+.+++|+.||+|++||+..+.         ++.++..|.+
T Consensus       376 GSSDntIRlwdi~~G~cLRvLeG---HEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg  450 (499)
T KOG0281|consen  376 GSSDNTIRLWDIECGACLRVLEG---HEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG  450 (499)
T ss_pred             cCCCceEEEEeccccHHHHHHhc---hHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccc
Confidence            99999999999999999999988   8899999999  56789999999999999998753         4566677888


Q ss_pred             cEEEEEEe
Q 022910          280 SIECIGFS  287 (290)
Q Consensus       280 ~v~~i~~s  287 (290)
                      .|..+.|.
T Consensus       451 RVFrLQFD  458 (499)
T KOG0281|consen  451 RVFRLQFD  458 (499)
T ss_pred             eeEEEeec
Confidence            99988885

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.7e-35  Score=244.32  Aligned_cols=235  Identities=25%  Similarity=0.435  Sum_probs=209.0

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe----eeeeeccccCCEEEEEECCCC-CEEEEEe
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDG-QLLASGG  126 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~  126 (290)
                      .++..-..+.||+..|.++.... .+.+|+||+.|.++++|.++++.    ++....+|.+.|.+++++..+ .+|+++|
T Consensus       353 ~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS  431 (775)
T KOG0319|consen  353 LPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS  431 (775)
T ss_pred             cCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec
Confidence            34555568899999999999444 55899999999999999885432    344567899999999997655 4899999


Q ss_pred             CCCcEEEEcCCCCce-----E----EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEE
Q 022910          127 LDGLVQIWDPSSGNL-----K----CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG  197 (290)
Q Consensus       127 ~dg~i~i~d~~~~~~-----~----~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  197 (290)
                      .|+++++|++...+.     .    .+...|...|++++++|+.+++|||+.|.+.+||++.......++.+|...|.++
T Consensus       432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V  511 (775)
T KOG0319|consen  432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCV  511 (775)
T ss_pred             CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEE
Confidence            999999999976221     1    1234688899999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910          198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  277 (290)
                      .|+|..+.++++|.|++|+||.+.+..+++++.+   |...|-.+.|-.++..|++++.||-|++|+++++.++.++.+|
T Consensus       512 ~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG---H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H  588 (775)
T KOG0319|consen  512 SFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG---HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH  588 (775)
T ss_pred             EeccccceeEeccCCceEEEEEeccceeeeeecC---ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence            9999999999999999999999999999999998   8999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEecCC
Q 022910          278 TDSIECIGFSRSE  290 (290)
Q Consensus       278 ~~~v~~i~~s~d~  290 (290)
                      +..|++++-+|.+
T Consensus       589 ~DrvWaL~~~~~~  601 (775)
T KOG0319|consen  589 NDRVWALSVSPLL  601 (775)
T ss_pred             cceeEEEeecCcc
Confidence            9999999988753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.9e-34  Score=220.87  Aligned_cols=189  Identities=29%  Similarity=0.505  Sum_probs=181.0

Q ss_pred             eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEEC
Q 022910           99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA  178 (290)
Q Consensus        99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~  178 (290)
                      ....+.+|.+.|.|+++.|.+.+|++|+.|++++|||+.++++..++.+|...+..+++++-..|+++++.|+.|+.||+
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            44557899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 022910          179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG  258 (290)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  258 (290)
                      ...+.++.+.+|-+.|.|++.+|.-+.|++|+.|.+++|||+++...+..+.+   |..+|..+.+.|-...+++|+.|+
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G---H~~~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG---HTNPVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC---CCCcceeEEeecCCCceEEecCCc
Confidence            99999999999999999999999999999999999999999999999999998   889999999999777899999999


Q ss_pred             cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          259 SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       259 ~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +|++||++.|+...++..|+..|++++.+|.+
T Consensus       300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e  331 (460)
T KOG0285|consen  300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKE  331 (460)
T ss_pred             eEEEeeeccCceeEeeecccceeeEEecCCch
Confidence            99999999999999999999999999999863

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.6e-34  Score=233.56  Aligned_cols=229  Identities=23%  Similarity=0.364  Sum_probs=210.0

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      .++.+.-..-+|.+..|-+ ..+.+++|+.|..|++|++.+++.+..+..|..-|++++.+|...+++++|.|-+|++|+
T Consensus        47 mVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~  125 (794)
T KOG0276|consen   47 MVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWD  125 (794)
T ss_pred             eeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEee
Confidence            4555556677888999988 788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC-ceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC--CEEEEEeC
Q 022910          136 PSSG-NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG--KTICTGSD  211 (290)
Q Consensus       136 ~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~  211 (290)
                      .+.. .+.+++.+|...|.+++|+| +.+.+++++-|++|++|.+.+..+..++.+|...|.|+.|-+.|  .+|++|+.
T Consensus       126 we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD  205 (794)
T KOG0276|consen  126 WENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD  205 (794)
T ss_pred             ccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC
Confidence            9876 67789999999999999999 56799999999999999999999999999999999999999844  69999999


Q ss_pred             CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      |.+|+|||..+..+++++.+   |...|..++|+|.-.++++|+.||++++|+..+-++..++.-.-..|++|+-.+
T Consensus       206 D~tiKvWDyQtk~CV~TLeG---Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k  279 (794)
T KOG0276|consen  206 DLTIKVWDYQTKSCVQTLEG---HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK  279 (794)
T ss_pred             CceEEEeecchHHHHHHhhc---ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC
Confidence            99999999999999999998   889999999999999999999999999999999888887776667888887554

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-33  Score=221.45  Aligned_cols=239  Identities=22%  Similarity=0.453  Sum_probs=200.7

Q ss_pred             CCCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC---eeeeeeccccCCEEEEEECCCCCEEEEE
Q 022910           49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSMDGQLLASG  125 (290)
Q Consensus        49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~  125 (290)
                      ....|.+..+.+..|++.|.-+.|++ +|++||+++.|.+..+|.+...   +..+++.+|..+|..+.|+||.++|++|
T Consensus       209 ~~qip~qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC  287 (519)
T KOG0293|consen  209 RLQIPSQTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC  287 (519)
T ss_pred             cccCCchhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence            45578888999999999999999999 8899999999999999998654   4577888999999999999999999999


Q ss_pred             eCCCcEEEEcCCCCceEEEEec-CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE---------------------
Q 022910          126 GLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY---------------------  183 (290)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------  183 (290)
                      +.+..+.+||+.+|.....+.. +...+.+.+|.|+|..+++|+.|+.|..||+.....                     
T Consensus       288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk  367 (519)
T KOG0293|consen  288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGK  367 (519)
T ss_pred             CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCc
Confidence            9999999999999998877764 356899999999999999999999999999864310                     


Q ss_pred             -EEe-------------------eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEE
Q 022910          184 -LNM-------------------FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT  243 (290)
Q Consensus       184 -~~~-------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  243 (290)
                       +..                   +.....+|++++.|.+++++++.-.+..|++||+.....+..+.+++.. .-+..-|
T Consensus       368 ~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~-~fiIrSC  446 (519)
T KOG0293|consen  368 YVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQG-HFIIRSC  446 (519)
T ss_pred             EEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccccc-ceEEEec
Confidence             000                   0112457788888888888888888888888888877777777776532 3344445


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          244 ISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       244 ~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      |.- +..++++|+.|+.|++|+..+++++..+.+|...|++++|+|.
T Consensus       447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~  493 (519)
T KOG0293|consen  447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA  493 (519)
T ss_pred             cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence            654 5689999999999999999999999999999999999999995

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.3e-32  Score=211.88  Aligned_cols=209  Identities=22%  Similarity=0.396  Sum_probs=190.0

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      ..+....+.+|++.|+++.|+. ++.+||||..+|.|+||...++.....+...-..|.=+.|+|.+..|+.|+.||.+.
T Consensus        95 ~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW  173 (399)
T KOG0296|consen   95 TGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW  173 (399)
T ss_pred             CCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence            4557888899999999999999 889999999999999999999998888876667788899999999999999999999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee------------------------
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS------------------------  188 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------------------  188 (290)
                      .|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++|++.+++++.++.                        
T Consensus       174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~  253 (399)
T KOG0296|consen  174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS  253 (399)
T ss_pred             EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence            99999988899999999999999999999999999999999999999876543332                        


Q ss_pred             -----------------------------------------------------------------------cCCCCeEEE
Q 022910          189 -----------------------------------------------------------------------GHGSSVTCG  197 (290)
Q Consensus       189 -----------------------------------------------------------------------~~~~~i~~~  197 (290)
                                                                                             .|..+|..+
T Consensus       254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l  333 (399)
T KOG0296|consen  254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL  333 (399)
T ss_pred             CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence                                                                                   135668888


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      .|.+ ..+|++++.+|.|+.||.|+|++...+.+   |...|..++++|+.+++++++.|++.+||++.
T Consensus       334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G---H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG---HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEcC-cchheeeccCceEEeeeccccceEEEEec---CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9988 67899999999999999999999999998   88999999999999999999999999999864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.4e-33  Score=238.04  Aligned_cols=233  Identities=22%  Similarity=0.355  Sum_probs=210.2

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (290)
                      ..+..|..|.++|..++|+| .+.+|++|+.|-.|++|++.+.+++.++.+|-.-|+.+.|++.-.+|+++|.|.+|+||
T Consensus        42 tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIW  120 (1202)
T KOG0292|consen   42 TLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIW  120 (1202)
T ss_pred             hHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEE
Confidence            34567778999999999999 88899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-----------------------------EEE
Q 022910          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----------------------------YLN  185 (290)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~  185 (290)
                      +..+.+++..+.+|...|.|..|+|....+++++-|.+|++||+...+                             ...
T Consensus       121 Nwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~  200 (1202)
T KOG0292|consen  121 NWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH  200 (1202)
T ss_pred             eccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence            999999999999999999999999999999999999999999985311                             123


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       186 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      .+.+|...|..++|+|.-.+|++|+.|..|++|.+...+. ..+....+|...|+++.|+|...++++.+.|++|++||+
T Consensus       201 VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm  279 (1202)
T KOG0292|consen  201 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM  279 (1202)
T ss_pred             eecccccccceEEecCCcceEEecCCcceeeEEEeccccc-eeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence            4568999999999999999999999999999999875443 444444559999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCcEEEEEEecC
Q 022910          266 TTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       266 ~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      ...+.++++.-.++..+.++-+|.
T Consensus       280 ~kRt~v~tfrrendRFW~laahP~  303 (1202)
T KOG0292|consen  280 TKRTSVQTFRRENDRFWILAAHPE  303 (1202)
T ss_pred             ccccceeeeeccCCeEEEEEecCC
Confidence            999999999877788888888875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=9.3e-33  Score=215.07  Aligned_cols=237  Identities=24%  Similarity=0.440  Sum_probs=203.2

Q ss_pred             CCCCCceeeeccCCcCEEEEEECCCC--CcEEEEecCCCcEEEEEccCCeee----eeeccccCCEEEEEECCCCCEEEE
Q 022910           51 EQPDDSTHIFSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRINQGDWA----SEIQGHKDSVSSLAFSMDGQLLAS  124 (290)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~  124 (290)
                      +..++....+.||.++|.+++|...+  ...|++++.|.++++|.++.+...    ..-.+|...|-++...+++..+++
T Consensus       131 d~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~S  210 (423)
T KOG0313|consen  131 DLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCS  210 (423)
T ss_pred             ecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEe
Confidence            35788999999999999998886522  236999999999999999876543    233589999999999999999999


Q ss_pred             EeCCCcEEEEcCC-------------------------CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC
Q 022910          125 GGLDGLVQIWDPS-------------------------SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD  179 (290)
Q Consensus       125 ~~~dg~i~i~d~~-------------------------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  179 (290)
                      |+.|..|.||+..                         +..++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.
T Consensus       211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle  289 (423)
T KOG0313|consen  211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE  289 (423)
T ss_pred             ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence            9999999999932                         1235667889999999999997 7799999999999999999


Q ss_pred             cccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCC
Q 022910          180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDG  258 (290)
Q Consensus       180 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg  258 (290)
                      ++..+..+. .+..+.++.++|..++|++|+.|..|++||.+++.--........|...|.++.|+| +...|++|+.|+
T Consensus       290 tg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  290 TGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             cccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            999888887 456799999999999999999999999999998754333333333888999999999 556789999999


Q ss_pred             cEEEEEcCCCc-EEEEEccCCCcEEEEEEecC
Q 022910          259 SVHMVNITTGK-VVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       259 ~i~~wd~~~~~-~~~~~~~~~~~v~~i~~s~d  289 (290)
                      ++++||+++.+ ++..+.+|...|.++.|+.-
T Consensus       369 t~klWDvRS~k~plydI~~h~DKvl~vdW~~~  400 (423)
T KOG0313|consen  369 TVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG  400 (423)
T ss_pred             eEEEEEeccCCCcceeeccCCceEEEEeccCC
Confidence            99999999988 99999999999999999754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.2e-32  Score=246.25  Aligned_cols=224  Identities=19%  Similarity=0.380  Sum_probs=192.9

Q ss_pred             eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----e----eeeeeccccCCEEEEEECC-CCCEEEEEeCCCc
Q 022910           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----D----WASEIQGHKDSVSSLAFSM-DGQLLASGGLDGL  130 (290)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~----~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~  130 (290)
                      +.+|.+.|.+++|+| ++.+||+|+.|+.|+||++...    .    ....+. +...+.+++|++ .+.+|++++.||+
T Consensus       479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence            445899999999999 7889999999999999997542    1    122233 356799999987 4779999999999


Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEc-CCCCEEEE
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT-PDGKTICT  208 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~  208 (290)
                      |++||+.+++.+..+..|...|++++|+| ++.+|++|+.||.|++||++++..+..+..+ ..+.++.|+ +++.+|++
T Consensus       557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat  635 (793)
T PLN00181        557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF  635 (793)
T ss_pred             EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence            99999999999999999999999999997 7889999999999999999999888888754 678999995 47899999


Q ss_pred             EeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CcEEEEEccCCCcE
Q 022910          209 GSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT------GKVVSSLVSHTDSI  281 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~------~~~~~~~~~~~~~v  281 (290)
                      |+.||.|++||+++.+ .+..+.+   |...|.++.|. ++.+|++++.|++|++||++.      .+++..+.+|...+
T Consensus       636 gs~dg~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i  711 (793)
T PLN00181        636 GSADHKVYYYDLRNPKLPLCTMIG---HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK  711 (793)
T ss_pred             EeCCCeEEEEECCCCCccceEecC---CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence            9999999999998765 3445554   78899999997 678999999999999999974      36788999999999


Q ss_pred             EEEEEecCC
Q 022910          282 ECIGFSRSE  290 (290)
Q Consensus       282 ~~i~~s~d~  290 (290)
                      ..++|+|++
T Consensus       712 ~~v~~s~~~  720 (793)
T PLN00181        712 NFVGLSVSD  720 (793)
T ss_pred             eEEEEcCCC
Confidence            999999875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9.2e-32  Score=245.57  Aligned_cols=222  Identities=22%  Similarity=0.347  Sum_probs=192.6

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC-CCCEEEEEeCCCcEEEEcCCCCceE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~  142 (290)
                      ...|.+++|+|..+.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||+.++..+
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI  611 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence            468999999986778999999999999999999999999999999999999997 7889999999999999999999888


Q ss_pred             EEEecCCCCEEEEEEc-CCCCEEEEeeCCCeEEEEECCccc-EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910          143 CTLEGPGGGVEWVSWH-PRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (290)
Q Consensus       143 ~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  220 (290)
                      ..+..+ ..+.++.|+ +++.+|++|+.||.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.|+.|++||+
T Consensus       612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~  689 (793)
T PLN00181        612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL  689 (793)
T ss_pred             EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence            888754 579999995 578999999999999999998765 567778899999999997 6789999999999999999


Q ss_pred             CCC------eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE-------------ccCCCcE
Q 022910          221 KSG------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL-------------VSHTDSI  281 (290)
Q Consensus       221 ~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-------------~~~~~~v  281 (290)
                      +.+      .++..+.+   |...+.+++|+|++.+|++|+.||.|++|+.....++..+             ..|...|
T Consensus       690 ~~~~~~~~~~~l~~~~g---h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V  766 (793)
T PLN00181        690 SMSISGINETPLHSFMG---HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI  766 (793)
T ss_pred             CCCccccCCcceEEEcC---CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence            753      44556655   7788999999999999999999999999998766544332             2344679


Q ss_pred             EEEEEecCC
Q 022910          282 ECIGFSRSE  290 (290)
Q Consensus       282 ~~i~~s~d~  290 (290)
                      ++++|+|++
T Consensus       767 ~~v~ws~~~  775 (793)
T PLN00181        767 SSVCWRGQS  775 (793)
T ss_pred             EEEEEcCCC
Confidence            999999975

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-33  Score=240.37  Aligned_cols=231  Identities=23%  Similarity=0.363  Sum_probs=208.3

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (290)
                      ..|...+..|..++|+| ....++++-.+|.|++||.+.+.++..+..|.++|+.+.|+|.+.+|++|+.|-.|+||+..
T Consensus         3 tkfEskSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    3 TKFESKSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             chhhcccccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence            34566778999999999 77788899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 022910          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV  217 (290)
Q Consensus       138 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  217 (290)
                      +.+++.++.+|...|+.+.||+.-.++++++.|.+|+||+..+++++..+++|...|+|..|+|....++++|-|.+|||
T Consensus        82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV  161 (1202)
T ss_pred             cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCeeeEE-----------------E---------eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--
Q 022910          218 WNPKSGENIHV-----------------I---------RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK--  269 (290)
Q Consensus       218 ~d~~~~~~~~~-----------------~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--  269 (290)
                      ||+...+....                 +         ....+|..+|+.++|+|.-.++++|+.|..|++|.+...+  
T Consensus       162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW  241 (1202)
T KOG0292|consen  162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW  241 (1202)
T ss_pred             EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence            99853211000                 0         0112388999999999999999999999999999987655  


Q ss_pred             EEEEEccCCCcEEEEEEecC
Q 022910          270 VVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       270 ~~~~~~~~~~~v~~i~~s~d  289 (290)
                      .+-+..+|.++|+++-|+|.
T Consensus       242 EvDtcrgH~nnVssvlfhp~  261 (1202)
T KOG0292|consen  242 EVDTCRGHYNNVSSVLFHPH  261 (1202)
T ss_pred             eehhhhcccCCcceEEecCc
Confidence            46678899999999999994

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-33  Score=208.14  Aligned_cols=223  Identities=20%  Similarity=0.372  Sum_probs=194.3

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-CeeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCc
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN  140 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~  140 (290)
                      -.+.+..++|++...+.+++++.||+++|||+.. ..++..++.|...|.++.|++- ++.++++|.|++|++|+...++
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            4678999999998889999999999999999754 4577889999999999999984 4578888999999999999999


Q ss_pred             eEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 022910          141 LKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVW  218 (290)
Q Consensus       141 ~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~  218 (290)
                      .++++++|...|...+|+| ..+.+++++.|+++++||++..-....+..|...|.++.|+. +.+.|++|+.|+.|++|
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW  218 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence            9999999999999999999 467999999999999999987654555888999999999998 66788999999999999


Q ss_pred             cCCCCee-eEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CcEEEEEccCCCcEEEEEEec
Q 022910          219 NPKSGEN-IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       219 d~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      |+++.+. +..+.+   |.-.|..+.||| ...+|++++.|-++++||... ..++.+..-|..-|.++.||+
T Consensus       219 Dir~~r~pl~eL~g---h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~  288 (311)
T KOG0277|consen  219 DIRNLRTPLFELNG---HGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL  288 (311)
T ss_pred             ehhhccccceeecC---CceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc
Confidence            9997653 445544   888999999999 457899999999999999874 446667778888888988886

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=7.7e-35  Score=224.75  Aligned_cols=212  Identities=26%  Similarity=0.510  Sum_probs=193.6

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (290)
                      ..+.|+|+.+..   ..+++|..|.+|+|||.++..+...+.+|++.|.|+.|  +.+.|++|+.|.+|+|||+++++++
T Consensus       196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             cCCceEEEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchh
Confidence            456899999863   46889999999999999999999999999999999999  5679999999999999999999999


Q ss_pred             EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910          143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (290)
Q Consensus       143 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  219 (290)
                      .++-.|...|..+.|+  ..++++++.|.+|.+||+....   +.+.+.+|...|..+.|+  .+++++++.|.+|++|+
T Consensus       271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~  346 (499)
T KOG0281|consen  271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS  346 (499)
T ss_pred             hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence            9999999999999996  5699999999999999998764   345677899999999995  56999999999999999


Q ss_pred             CCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      +.+++.+.++.+   |..+|.|+.+  .++++++|++|.+|++||+..|++++.+++|+.-|++|.|..
T Consensus       347 ~st~efvRtl~g---HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~  410 (499)
T KOG0281|consen  347 TSTCEFVRTLNG---HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN  410 (499)
T ss_pred             ccceeeehhhhc---ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC
Confidence            999999999888   8888988888  589999999999999999999999999999999999999864

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-32  Score=201.66  Aligned_cols=226  Identities=20%  Similarity=0.367  Sum_probs=204.8

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (290)
                      ..++||..+++-+.|+. ++.+|.+++.|.+..+|-..+|+.+.++.+|++.|+|+..+-+.+++++|+.|.++++||+.
T Consensus         4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            45789999999999999 88999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-----CCeEEEEECC-------cccEEEeeecCCCCeEEEEEcCCCCE
Q 022910          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNAD-------RAAYLNMFSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       138 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~  205 (290)
                      +|+.+..++. ..+|..+.|++.|++++.+..     .+.|.++|++       ...++.++..+.+.++.+-|.|-+.+
T Consensus        83 tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   83 TGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET  161 (327)
T ss_pred             CCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence            9999999984 457999999999998887654     4679999998       44567788888899999999999999


Q ss_pred             EEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG  285 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~  285 (290)
                      |++|..+|.|.+||+++++.+...  ...|...|+.|+++|+..++++++.|.+-++||+.+-.+++++.. ..||++.+
T Consensus       162 ii~Ghe~G~is~~da~~g~~~v~s--~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aa  238 (327)
T KOG0643|consen  162 IIAGHEDGSISIYDARTGKELVDS--DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAA  238 (327)
T ss_pred             EEEecCCCcEEEEEcccCceeeec--hhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-ccccccee
Confidence            999999999999999998654333  223888999999999999999999999999999999999999986 67999999


Q ss_pred             Eec
Q 022910          286 FSR  288 (290)
Q Consensus       286 ~s~  288 (290)
                      ++|
T Consensus       239 isP  241 (327)
T KOG0643|consen  239 ISP  241 (327)
T ss_pred             ccc
Confidence            998

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6e-34  Score=218.23  Aligned_cols=236  Identities=24%  Similarity=0.390  Sum_probs=205.6

Q ss_pred             CCCceeeec-cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--------cccCCEEEEEECCCCCEEE
Q 022910           53 PDDSTHIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--------GHKDSVSSLAFSMDGQLLA  123 (290)
Q Consensus        53 ~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~  123 (290)
                      |....+.++ |.+..+-|..|+| ++++|++|+.||.|.+|+..+|+..+.++        -+..+|.|+.|+.+...+|
T Consensus       201 Pt~l~r~IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlA  279 (508)
T KOG0275|consen  201 PTQLARSIKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLA  279 (508)
T ss_pred             hHHhhhheecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhh
Confidence            344444333 4566788999999 88999999999999999999988766543        3678999999999999999


Q ss_pred             EEeCCCcEEEEcCCCCceEEEEe-cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCC
Q 022910          124 SGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD  202 (290)
Q Consensus       124 ~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  202 (290)
                      +|+.||.|++|.+.+|.++..|. .|...|+|+.|+.++..+++++.|.++++.-+.++++++.+.+|.+.|+...|.++
T Consensus       280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d  359 (508)
T KOG0275|consen  280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD  359 (508)
T ss_pred             ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence            99999999999999999999987 79999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC--------------------------------------------CcccC
Q 022910          203 GKTICTGSDDATLRVWNPKSGENIHVIRGHP--------------------------------------------YHTEG  238 (290)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------------------------------~~~~~  238 (290)
                      |..+++++.||+|++|+.++.+++.+++...                                            ...+.
T Consensus       360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGd  439 (508)
T KOG0275|consen  360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGD  439 (508)
T ss_pred             CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCc
Confidence            9999999999999999998877655443221                                            02233


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       239 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      ..+.+++|.|.++++.+.|+.++.|.+.+|++-+++..|...|-+++-+|.
T Consensus       440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH  490 (508)
T KOG0275|consen  440 FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH  490 (508)
T ss_pred             eEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence            456678999999999999999999999999999999999988888887774

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=9.1e-32  Score=201.08  Aligned_cols=219  Identities=23%  Similarity=0.435  Sum_probs=190.0

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC--eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS  138 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  138 (290)
                      .+|+..|++++|+| .+++||+|+.|.++.||.-..+  +++..+.+|...|.|++|+++|++||+++.|.+|-||.+..
T Consensus        58 ~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de  136 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE  136 (312)
T ss_pred             ccchheeeeeeecC-CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC
Confidence            47999999999999 7789999999999999987654  57788999999999999999999999999999999999874


Q ss_pred             C---ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC---cccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          139 G---NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD---RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       139 ~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      +   .+...++.|...|..+.|||...+|++++.|.+|++|.-.   .-.+.+++.+|...|.+++|+|.|..|++++.|
T Consensus       137 ddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD  216 (312)
T KOG0645|consen  137 DDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD  216 (312)
T ss_pred             CCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence            4   5677889999999999999999999999999999999876   236889999999999999999999999999999


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC------cEEE-EEccCCCcEEEEE
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG------KVVS-SLVSHTDSIECIG  285 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~------~~~~-~~~~~~~~v~~i~  285 (290)
                      ++|+||-..+.     +..  .|...+..+.|.  ...|++++.|+.|++|.-...      +++. .-..|...|++++
T Consensus       217 ~tv~Iw~~~~~-----~~~--~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~  287 (312)
T KOG0645|consen  217 GTVSIWRLYTD-----LSG--MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQ  287 (312)
T ss_pred             cceEeeeeccC-----cch--hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEE
Confidence            99999987622     222  277889999998  558999999999999986542      1222 3346888999999


Q ss_pred             EecC
Q 022910          286 FSRS  289 (290)
Q Consensus       286 ~s~d  289 (290)
                      |.|.
T Consensus       288 w~p~  291 (312)
T KOG0645|consen  288 WNPK  291 (312)
T ss_pred             EcCC
Confidence            9993

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=2.6e-32  Score=207.84  Aligned_cols=225  Identities=23%  Similarity=0.381  Sum_probs=196.1

Q ss_pred             CCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC------------------CeeeeeeccccCCEEE
Q 022910           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------------GDWASEIQGHKDSVSS  112 (290)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------------~~~~~~~~~~~~~i~~  112 (290)
                      +.+.-....+..|+.++.+.+|+| ++.++|+|+.|..|+|.|++.                  ...++++..|...|++
T Consensus        99 e~~~yEt~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~  177 (430)
T KOG0640|consen   99 EPSEYETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVND  177 (430)
T ss_pred             CCcccceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccc
Confidence            344556788899999999999999 899999999999999999862                  1246677789999999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee--
Q 022910          113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--  188 (290)
Q Consensus       113 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--  188 (290)
                      +.|+|....|++++.|++|++||+......+.++  ....++.++.|+|.|.+|++|....++++||+.+.++.....  
T Consensus       178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd  257 (430)
T KOG0640|consen  178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD  257 (430)
T ss_pred             eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence            9999999999999999999999997654332222  244579999999999999999999999999999988765543  


Q ss_pred             -cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          189 -GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       189 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                       .|...|+++.+++.+++.++++.||.|++||--+++++.++.... ....|++..|..+++|+++.+.|..+++|.+.+
T Consensus       258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST  336 (430)
T ss_pred             cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence             488899999999999999999999999999999999998887553 456799999999999999999999999999999


Q ss_pred             CcEEEEEccC
Q 022910          268 GKVVSSLVSH  277 (290)
Q Consensus       268 ~~~~~~~~~~  277 (290)
                      ++++..+.+.
T Consensus       337 ~R~l~~YtGA  346 (430)
T KOG0640|consen  337 GRMLKEYTGA  346 (430)
T ss_pred             CceEEEEecC
Confidence            9999988764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.2e-31  Score=199.79  Aligned_cols=234  Identities=22%  Similarity=0.340  Sum_probs=201.1

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC--CCcEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL--DGLVQ  132 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~  132 (290)
                      ++.+.|+.-.+.|.++.|++ ++.++++++.|.+++|||..+++.+.++..+.-.+..++|......++.++.  |.+|+
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             ccccccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            45566677788999999999 7778888999999999999999999999988889999999877777777766  88999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee------------------------
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS------------------------  188 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------------------  188 (290)
                      ..++.+.+.++.+.+|...|..++.+|-+..+++++.|++|++||++..++...+.                        
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~  163 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSEL  163 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCe
Confidence            99999999999999999999999999999999999999999999999644321111                        


Q ss_pred             ---------------------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC
Q 022910          189 ---------------------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD  247 (290)
Q Consensus       189 ---------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  247 (290)
                                           +.....+.|.|+|+|++|+.++..+.+++.|.-+|.....+..++....-.-..+|+|+
T Consensus       164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd  243 (311)
T KOG1446|consen  164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD  243 (311)
T ss_pred             EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence                                 11345677889999999999888899999999889888888876544433467789999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEEcc-CCCcEEEEEEecC
Q 022910          248 STLALSGSKDGSVHMVNITTGKVVSSLVS-HTDSIECIGFSRS  289 (290)
Q Consensus       248 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~i~~s~d  289 (290)
                      ++++++|+.||+|.+|++.+++.+..+.+ +.++++++.|+|.
T Consensus       244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~  286 (311)
T KOG1446|consen  244 SKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR  286 (311)
T ss_pred             CcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence            99999999999999999999999999998 6889999999984

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-32  Score=230.97  Aligned_cols=210  Identities=24%  Similarity=0.385  Sum_probs=194.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-----eee----eeccccCCEEEEEECCCCCEEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WAS----EIQGHKDSVSSLAFSMDGQLLAS  124 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~----~~~~~~~~i~~~~~~~~~~~l~~  124 (290)
                      ..++....||++.|.+++++..+..+|++++.|+++++|++...+     .+.    ....|...|+|++++|+.++||+
T Consensus       401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT  480 (775)
T KOG0319|consen  401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT  480 (775)
T ss_pred             hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence            445667789999999999998788899999999999999997622     111    23469999999999999999999


Q ss_pred             EeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCC
Q 022910          125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  204 (290)
                      ||.|.+.+||+++......++.+|...+.++.|+|....+++++.|++|+||.+.+..+++++.+|...|..+.|-.++.
T Consensus       481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~  560 (775)
T KOG0319|consen  481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK  560 (775)
T ss_pred             cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      .|++++.||.|++|+++++.+..++..   |...|++++.+|...++++|+.||.|.+|.=-
T Consensus       561 qliS~~adGliKlWnikt~eC~~tlD~---H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  561 QLISAGADGLIKLWNIKTNECEMTLDA---HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             EEEeccCCCcEEEEeccchhhhhhhhh---ccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence            999999999999999999999999988   89999999999999999999999999999643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=7.9e-32  Score=230.41  Aligned_cols=225  Identities=26%  Similarity=0.483  Sum_probs=204.9

Q ss_pred             CCCCceee-eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910           52 QPDDSTHI-FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (290)
Q Consensus        52 ~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (290)
                      .+...+.. +.||.+.|.+++|.. ++.++++|+.|.++++||..++++...+.+|.+.|.++..  ...++++|+.|.+
T Consensus       236 ~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~t  312 (537)
T KOG0274|consen  236 NNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNT  312 (537)
T ss_pred             ccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCce
Confidence            34555666 999999999999997 7889999999999999999999999999999999999988  4567888999999


Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      |++|++.++..+..+.+|.++|+++..+  +.++++|+.|++|++|++.++++++.+.+|...|+++.+.+. ..+++|+
T Consensus       313 VkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs  389 (537)
T KOG0274|consen  313 VKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS  389 (537)
T ss_pred             EEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee
Confidence            9999999999999999999999999997  889999999999999999999999999999999999988754 8999999


Q ss_pred             CCCeEEEEcCCCC-eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc-CCCcEEEEEEe
Q 022910          211 DDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS-HTDSIECIGFS  287 (290)
Q Consensus       211 ~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~i~~s  287 (290)
                      .|+.|++||+++. +++.++.+   |...+..+.+  .+++|++++.|+.|++||..++++++.+.+ |.+.|+.+++.
T Consensus       390 ~D~~IkvWdl~~~~~c~~tl~~---h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~  463 (537)
T KOG0274|consen  390 LDTTIKVWDLRTKRKCIHTLQG---HTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG  463 (537)
T ss_pred             eccceEeecCCchhhhhhhhcC---Cccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence            9999999999999 88888887   6676766555  578999999999999999999999999999 67889888774

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-32  Score=230.75  Aligned_cols=229  Identities=19%  Similarity=0.316  Sum_probs=187.7

Q ss_pred             eeec-cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--------------------------------C-------
Q 022910           58 HIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------------------------------G-------   97 (290)
Q Consensus        58 ~~~~-~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------------------------------~-------   97 (290)
                      +.+. .|.++|.++.|++ +|++||+|+.||.|+||.+..                                .       
T Consensus       260 Qe~~~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eccccccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            3344 7999999999999 999999999999999998754                                0       


Q ss_pred             ---------------------eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEE
Q 022910           98 ---------------------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS  156 (290)
Q Consensus        98 ---------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~  156 (290)
                                           +++..+.+|.+.|..+.|+. +++|++++.|.+|++|++....++..|. |...|+|++
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence                                 12233468999999999995 4589999999999999999999999997 888899999


Q ss_pred             EcC-CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC--
Q 022910          157 WHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--  233 (290)
Q Consensus       157 ~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--  233 (290)
                      |+| |.++|++|+-||.|+||++...+.+.-.. ...-|++++|.|+|++.++|+.+|.+++|+....+.........  
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence            999 78899999999999999998776554443 45889999999999999999999999999998877654443211  


Q ss_pred             ---CcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCC--cEEEEEEecCC
Q 022910          234 ---YHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD--SIECIGFSRSE  290 (290)
Q Consensus       234 ---~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~v~~i~~s~d~  290 (290)
                         .....|+.+.|.| +...|++.+.|..|||||.+...++..|+++.+  .=...+|+.||
T Consensus       496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg  558 (712)
T KOG0283|consen  496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG  558 (712)
T ss_pred             CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC
Confidence               1123799999998 444577788999999999999999999887543  33445676665

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-32  Score=217.27  Aligned_cols=226  Identities=28%  Similarity=0.426  Sum_probs=196.8

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCC
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPS  137 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~  137 (290)
                      .+.-.++.|+++.|.. +|.+||+|...|.|+|||+.+...+..+.+|+.+|..+.|+|+++ .|++|+.|+.+++||+.
T Consensus        63 ~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s  141 (487)
T KOG0310|consen   63 TFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS  141 (487)
T ss_pred             hHHhhccceeEEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence            3444677899999998 899999999999999999777677888999999999999999655 78888889999999999


Q ss_pred             CCceEEEEecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910          138 SGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       138 ~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                      +......+.+|...|+|.+|+|.. ..+++|+.||.|++||++.. ..+..+. |..+|..+.+.|.|..+++++. ..|
T Consensus       142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~v  219 (487)
T KOG0310|consen  142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSV  219 (487)
T ss_pred             CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeE
Confidence            998777889999999999999964 48999999999999999987 5566665 8999999999999999998864 579


Q ss_pred             EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +|||+-+|........  .|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+.- .++|.+++.+|++
T Consensus       220 kVWDl~~G~qll~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd  291 (487)
T KOG0310|consen  220 KVWDLTTGGQLLTSMF--NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDD  291 (487)
T ss_pred             EEEEecCCceehhhhh--cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCC
Confidence            9999996654333322  2888999999999999999999999999999999999999875 6899999999974

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-31  Score=221.30  Aligned_cols=221  Identities=24%  Similarity=0.420  Sum_probs=202.3

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc-ccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (290)
                      +...|+++.|++ ++.+||+|..+|.|.|||..+.+.+..+.+ |...|.+++|+  +..+.+|+.++.|..+|++..+.
T Consensus       216 ~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~  292 (484)
T KOG0305|consen  216 GEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH  292 (484)
T ss_pred             CCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence            488999999999 889999999999999999999999999998 99999999996  77899999999999999998876


Q ss_pred             EEE-EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC-CCCEEEEEe--CCCeEEE
Q 022910          142 KCT-LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGS--DDATLRV  217 (290)
Q Consensus       142 ~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~i  217 (290)
                      ... +.+|...|..+.|+++++++|+|+.|+.+.|||.....++..+..|...|.+++|+| ...+||+|+  .|+.|++
T Consensus       293 ~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f  372 (484)
T KOG0305|consen  293 VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF  372 (484)
T ss_pred             hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence            655 788999999999999999999999999999999988899999999999999999999 677888864  5999999


Q ss_pred             EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG--SKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ||..++..+..+.    ..+.|++|.|++..+-|+++  ..++.|.||+..+.+++..+.+|...|..+++||||
T Consensus       373 wn~~~g~~i~~vd----tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg  443 (484)
T KOG0305|consen  373 WNTNTGARIDSVD----TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDG  443 (484)
T ss_pred             EEcCCCcEecccc----cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCC
Confidence            9999999988887    57899999999987655553  457799999999999999999999999999999996

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.1e-31  Score=201.94  Aligned_cols=228  Identities=19%  Similarity=0.337  Sum_probs=188.9

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-Ceee-eeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWA-SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      .-.+.|.+|+|+|....++++|+.||+||+|+++. +..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            44678999999998778888999999999999987 3333 345579999999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCEEEEEEcCCCC--EEEEeeCCCeEEEEECCcccEEEeeec----------------------------
Q 022910          140 NLKCTLEGPGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRAAYLNMFSG----------------------------  189 (290)
Q Consensus       140 ~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------  189 (290)
                      + +..+..|.++|..+.|-+...  .|++|+.|.+|+.||+|...++.++..                            
T Consensus       105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL  183 (347)
T KOG0647|consen  105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL  183 (347)
T ss_pred             C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence            5 556677999999999988665  899999999999999998765443321                            


Q ss_pred             -------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC--eeeEEEeCCCCc------ccCeEEEEEcCCC
Q 022910          190 -------------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG--ENIHVIRGHPYH------TEGLTCLTISADS  248 (290)
Q Consensus       190 -------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~------~~~v~~~~~~~~~  248 (290)
                                   .+-.++|++..++....+.|+-.|.+.|..+..+  +.-.+++.|...      --.|++++|+|..
T Consensus       184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h  263 (347)
T KOG0647|consen  184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH  263 (347)
T ss_pred             CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence                         1235788888888877888999999888877765  334455554311      2358899999998


Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          249 TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       249 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ..|+|++.||++.+||-.....+.+.+.|..+|++.+|+.+|
T Consensus       264 gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G  305 (347)
T KOG0647|consen  264 GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNG  305 (347)
T ss_pred             ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCC
Confidence            999999999999999998888999999999999999999886

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4.2e-31  Score=196.62  Aligned_cols=227  Identities=21%  Similarity=0.335  Sum_probs=205.0

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (290)
                      ...+++|.+.|-.++|+|..+.+|++++.|.+|++||...+++...+....+. .-+.|+|+|.++++++.|..|.+.|.
T Consensus        57 ~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~  135 (313)
T KOG1407|consen   57 ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDA  135 (313)
T ss_pred             hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEe
Confidence            34567999999999999999999999999999999999999999888754444 45789999999999999999999999


Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  216 (290)
                      ++.+.....+. ...+.-+.|+-++.+++.....|.|.|......+++..+++|.....||.|+|+|++|++|+.|..+.
T Consensus       136 r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS  214 (313)
T KOG1407|consen  136 RTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS  214 (313)
T ss_pred             cccceeehhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceee
Confidence            99888766653 34578889997788888777789999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      +||+...-+.+.+..   +.-+|..+.|+.+|++||+|+.|..|-|=++.+|..+..++ +.++-..++|+|.
T Consensus       215 LWD~~ELiC~R~isR---ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk  283 (313)
T KOG1407|consen  215 LWDVDELICERCISR---LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPK  283 (313)
T ss_pred             ccChhHhhhheeecc---ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCC
Confidence            999998888888877   78899999999999999999999999999999999999998 4889999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.6e-30  Score=210.38  Aligned_cols=231  Identities=26%  Similarity=0.387  Sum_probs=206.8

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      .+..+-.+.||...|++++|-|..+..++||+.|++|.+|.-..-+...++..|..-|.|+.|+|+|.++++++.||++.
T Consensus       136 SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~  215 (603)
T KOG0318|consen  136 SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY  215 (603)
T ss_pred             CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence            46677888999999999999998899999999999999999888888888999999999999999999999999999999


Q ss_pred             EEcCCCCceEEEEe---cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCC---CeEEEEEcCCCCEE
Q 022910          133 IWDPSSGNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS---SVTCGDFTPDGKTI  206 (290)
Q Consensus       133 i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l  206 (290)
                      +||-.+++.+..+.   +|.+.|.+++|+|++..|++++.|.+++|||+.+.++++++.....   ....+.|.  ...|
T Consensus       216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~l  293 (603)
T KOG0318|consen  216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHL  293 (603)
T ss_pred             EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeE
Confidence            99999999999998   7999999999999999999999999999999999999888864322   33344464  6689


Q ss_pred             EEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE-ccCCCcEEEEE
Q 022910          207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL-VSHTDSIECIG  285 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~i~  285 (290)
                      ++.+.+|.|.+++......+..+.+   |...|+++..+|++.+|++|+.||.|.-|+..++..-+.. +.|.+.|.+++
T Consensus       294 ItVSl~G~in~ln~~d~~~~~~i~G---HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~  370 (603)
T KOG0318|consen  294 ITVSLSGTINYLNPSDPSVLKVISG---HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA  370 (603)
T ss_pred             EEEEcCcEEEEecccCCChhheecc---cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence            9999999999999999998888888   8999999999999999999999999999999988765544 56888888877


Q ss_pred             Eec
Q 022910          286 FSR  288 (290)
Q Consensus       286 ~s~  288 (290)
                      -+.
T Consensus       371 ~~~  373 (603)
T KOG0318|consen  371 ASE  373 (603)
T ss_pred             ecC
Confidence            654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=2.8e-31  Score=210.20  Aligned_cols=233  Identities=21%  Similarity=0.334  Sum_probs=207.7

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      ..+.+..|+||+..|+.+.|+| ....+++++.|..|+||.............|..+|+.+..+|.|.||++++.||+..
T Consensus       250 s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~  328 (506)
T KOG0289|consen  250 SNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA  328 (506)
T ss_pred             hhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEE
Confidence            4667889999999999999999 778889999999999999988877778888999999999999999999999999999


Q ss_pred             EEcCCCCceEEEEecC--CCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910          133 IWDPSSGNLKCTLEGP--GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      +.|++++..+......  .-.+++.+|||||.+|.+|..||.|+|||+..+..+..|.+|.++|..++|+.+|-+|++++
T Consensus       329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a  408 (506)
T KOG0289|consen  329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA  408 (506)
T ss_pred             EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe
Confidence            9999999988776642  23589999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCcEEEEEccCCCcEEEEEEec
Q 022910          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI--TTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~--~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      .|+.|++||+|..+...++....  ...+.++.|.+.|.+|+.++.+=+|++++-  ++...+..+..|.+..+++.|..
T Consensus       409 dd~~V~lwDLRKl~n~kt~~l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~  486 (506)
T KOG0289|consen  409 DDGSVKLWDLRKLKNFKTIQLDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGE  486 (506)
T ss_pred             cCCeEEEEEehhhcccceeeccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecc
Confidence            99999999999988888777542  347999999999999999987766666663  25678888888888888888854

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-32  Score=201.92  Aligned_cols=213  Identities=26%  Similarity=0.397  Sum_probs=189.1

Q ss_pred             CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC-CCCEEEEEeCC
Q 022910           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLD  128 (290)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d  128 (290)
                      ..++..|++.++.|...|.++.|++..+..+++++.|++|++|+...++.+.++.+|...|...+|+| ..+.++++|.|
T Consensus        90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd  169 (311)
T KOG0277|consen   90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD  169 (311)
T ss_pred             cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence            45678899999999999999999998888999999999999999999999999999999999999999 46799999999


Q ss_pred             CcEEEEcCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcC-CCCE
Q 022910          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKT  205 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~  205 (290)
                      +++++||++.......+..|...|.++.|+. +.+.++||+.|+.|+.||++.. .++..+.+|.-.|+.++||| ...+
T Consensus       170 ~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l  249 (311)
T KOG0277|consen  170 GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL  249 (311)
T ss_pred             ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence            9999999987655556888999999999987 5678999999999999999985 46788899999999999999 4578


Q ss_pred             EEEEeCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 022910          206 ICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~  265 (290)
                      |++++.|=+++|||...+.. +.+...   |..-+..+.|++ ++.++|+++.|+.++||+.
T Consensus       250 LaSasYDmT~riw~~~~~ds~~e~~~~---HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  250 LASASYDMTVRIWDPERQDSAIETVDH---HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccccceEEecccccchhhhhhhhc---cceEEeccccccccCceeeecccccceeeecc
Confidence            89999999999999985543 333333   788899999998 7889999999999999984

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.6e-32  Score=202.01  Aligned_cols=232  Identities=23%  Similarity=0.421  Sum_probs=211.6

Q ss_pred             CCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (290)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (290)
                      -..+.=+-+|.||++.|.+..++. +....|+++.|-+-++||.-++..+..+. |..-|..++|+.+.++|++|+.+..
T Consensus        46 g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekl  123 (334)
T KOG0278|consen   46 GDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKL  123 (334)
T ss_pred             CCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHH
Confidence            345667899999999999999988 77788999999999999999999999988 9999999999999999999999999


Q ss_pred             EEEEcCCCCc-eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910          131 VQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (290)
Q Consensus       131 i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  209 (290)
                      ++|||++..+ +...+.+|.+.|..+.|....+.|++++.+++|++||.++++.++++. .+.+|+++.++++|++|.++
T Consensus       124 lrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia  202 (334)
T KOG0278|consen  124 LRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA  202 (334)
T ss_pred             hhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe
Confidence            9999998764 567788999999999999988999999999999999999999999887 67899999999999987776


Q ss_pred             eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE-ccCCCcEEEEEEec
Q 022910          210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL-VSHTDSIECIGFSR  288 (290)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~i~~s~  288 (290)
                      . .+.|.+||..+..+++.+.    ....|.+..++|+..++++|+.|+.++.||..++..+..+ ++|-++|-|+.|+|
T Consensus       203 ~-gssV~Fwdaksf~~lKs~k----~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP  277 (334)
T KOG0278|consen  203 Y-GSSVKFWDAKSFGLLKSYK----MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP  277 (334)
T ss_pred             c-CceeEEeccccccceeecc----CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC
Confidence            4 5679999999998888777    5678999999999999999999999999999999999986 89999999999999


Q ss_pred             CC
Q 022910          289 SE  290 (290)
Q Consensus       289 d~  290 (290)
                      ||
T Consensus       278 dG  279 (334)
T KOG0278|consen  278 DG  279 (334)
T ss_pred             CC
Confidence            97

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-30  Score=194.97  Aligned_cols=232  Identities=19%  Similarity=0.342  Sum_probs=199.3

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC-----
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-----  127 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----  127 (290)
                      .++.+-++.||++.|+|+.... +...+++|+.|.++++||+.+|+.+..++ ...+|..+.|+++|++++.+..     
T Consensus        41 nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~  118 (327)
T KOG0643|consen   41 NGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGY  118 (327)
T ss_pred             CCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCc
Confidence            5778899999999999999998 77889999999999999999999999988 6778999999999998777643     


Q ss_pred             CCcEEEEcCC-------CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-EEEeeecCCCCeEEEEE
Q 022910          128 DGLVQIWDPS-------SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDF  199 (290)
Q Consensus       128 dg~i~i~d~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~  199 (290)
                      .+.|.+++++       ..++...+..+...++.+.|.|-+..|++|..+|.|.+||+++++ .+.....|...|+.|++
T Consensus       119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~  198 (327)
T KOG0643|consen  119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF  198 (327)
T ss_pred             ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccc
Confidence            5789999987       456677888888999999999999999999999999999999974 55666779999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCc--EEEEEcCCC---------
Q 022910          200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS--VHMVNITTG---------  268 (290)
Q Consensus       200 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~~wd~~~~---------  268 (290)
                      +|+..++++++.|.+-++||.++...++++.    ...+|++.+++|-...++.|+....  |.-=..+.|         
T Consensus       199 s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~----te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~  274 (327)
T KOG0643|consen  199 SRDRTYFITGSKDTTAKLVDVRTLEVLKTYT----TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHL  274 (327)
T ss_pred             cCCcceEEecccCccceeeeccceeeEEEee----ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHH
Confidence            9999999999999999999999999999888    5789999999996666666654322  222222223         


Q ss_pred             ---cEEEEEccCCCcEEEEEEecCC
Q 022910          269 ---KVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       269 ---~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                         +.+..+++|-++|++++|||+|
T Consensus       275 i~eEEigrvkGHFGPINsvAfhPdG  299 (327)
T KOG0643|consen  275 IFEEEIGRVKGHFGPINSVAFHPDG  299 (327)
T ss_pred             HHHHHhccccccccCcceeEECCCC
Confidence               4677889999999999999997

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.6e-32  Score=219.81  Aligned_cols=207  Identities=20%  Similarity=0.384  Sum_probs=183.5

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCC-CEEEEEeCCCcE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLV  131 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i  131 (290)
                      ...++++|.||..+|.+++|++ .+..|++++.|+.|++||+++|+++..+. -...++|+.|.|++ +.|++|+.|+.|
T Consensus       247 ~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki  324 (503)
T KOG0282|consen  247 DRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKI  324 (503)
T ss_pred             Ccceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcE
Confidence            4778999999999999999999 77778899999999999999999999987 45678999999998 789999999999


Q ss_pred             EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE--------------------------
Q 022910          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN--------------------------  185 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------------------  185 (290)
                      +.||+++++.++.+..|-++|..+.|-++++.+++++.++.++||+.+..-+++                          
T Consensus       325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs  404 (503)
T KOG0282|consen  325 RQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS  404 (503)
T ss_pred             EEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence            999999999999999999999999999999999999999999999987542211                          


Q ss_pred             --------------------eeecC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEE
Q 022910          186 --------------------MFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT  243 (290)
Q Consensus       186 --------------------~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  243 (290)
                                          .+.+|  .+.-..+.|||+|.+|++|..+|.+.+||.++.+.+..++.   |..++..+.
T Consensus       405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka---h~~~ci~v~  481 (503)
T KOG0282|consen  405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA---HDQPCIGVD  481 (503)
T ss_pred             cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc---CCcceEEEE
Confidence                                11222  23446689999999999999999999999999998888887   789999999


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEE
Q 022910          244 ISA-DSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       244 ~~~-~~~~l~~~~~dg~i~~wd  264 (290)
                      |+| ....+|+++.+|.|++|+
T Consensus       482 wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  482 WHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ecCCCcceeEecccCceeEecC
Confidence            999 557899999999999996

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=6.5e-31  Score=195.61  Aligned_cols=227  Identities=21%  Similarity=0.349  Sum_probs=202.7

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee--eccccCCEEEEEECC-CCCEEEEEeCCCcEEEE
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--IQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIW  134 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~  134 (290)
                      +.+++|...|.+++|+. ++..|++|+.|+++++|++...+....  ..+|.+.|-.++|+| +...|++++.|.+|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            77889999999999999 888999999999999999988765543  468999999999987 45689999999999999


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 022910          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (290)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  214 (290)
                      |++.+++...+....+.| -+.|+|+|.++++++.|..|.+.|.++.+.+...+ ....+.-++|+.++.+|+.....|.
T Consensus        93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCce
Confidence            999999999888666544 48899999999999999999999999988776665 4556778889888888888888899


Q ss_pred             EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      |.|......+++..++.   |.....|+.|+|+|++||+|+.|-.+.+||+...-+++.+.-+.-+|+.|+||.||
T Consensus       171 v~ILsypsLkpv~si~A---H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg  243 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKA---HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG  243 (313)
T ss_pred             EEEEecccccccccccc---CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc
Confidence            99999988888888887   78899999999999999999999999999999999999999999999999999886

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=1.2e-30  Score=207.62  Aligned_cols=232  Identities=20%  Similarity=0.366  Sum_probs=195.7

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----------eeeeeeccccCCEEEEEECCCCC-EEEE
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----------DWASEIQGHKDSVSSLAFSMDGQ-LLAS  124 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~-~l~~  124 (290)
                      .+...-.|.+.|+.+.+.|++..++|+++..+.|.|||..+.          .+..++.+|...-++++|++... +|++
T Consensus       116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls  195 (422)
T KOG0264|consen  116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS  195 (422)
T ss_pred             EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence            344446799999999999999999999999999999998652          12236788998788999998654 8999


Q ss_pred             EeCCCcEEEEcCCCCc-------eEEEEecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECC--cccEEEeeecCCCCe
Q 022910          125 GGLDGLVQIWDPSSGN-------LKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNAD--RAAYLNMFSGHGSSV  194 (290)
Q Consensus       125 ~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i  194 (290)
                      ++.|+.|++||+....       +...+.+|...|..++|++. ..+|++++.|+.+.|||+|  +.++.....+|.+.|
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v  275 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV  275 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence            9999999999997542       34677889999999999995 4588899999999999999  566777888999999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC---
Q 022910          195 TCGDFTP-DGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG---  268 (290)
Q Consensus       195 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~---  268 (290)
                      .|++|+| ++..||+|+.|++|++||+|+.+. +..+.+   |...|.++.|+| ....||+++.|+++.+||+..-   
T Consensus       276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~---H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e  352 (422)
T KOG0264|consen  276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG---HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE  352 (422)
T ss_pred             eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC---CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence            9999999 667788999999999999998654 445554   899999999999 5578999999999999998642   


Q ss_pred             -----------cEEEEEccCCCcEEEEEEecCC
Q 022910          269 -----------KVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       269 -----------~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                                 +++....||...|..+.|+|.+
T Consensus       353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~e  385 (422)
T KOG0264|consen  353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE  385 (422)
T ss_pred             cChhhhccCCcceeEEecCcccccccccCCCCC
Confidence                       3456777999999999999974

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1e-29  Score=217.04  Aligned_cols=223  Identities=17%  Similarity=0.260  Sum_probs=174.5

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee-------------eeeccccCCEEEEEECC-CCCEEEEEeCCC
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-------------SEIQGHKDSVSSLAFSM-DGQLLASGGLDG  129 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg  129 (290)
                      -..|.....++ ++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++++|++++.|+
T Consensus        20 ~~~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         20 FLNVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             eeccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            34555555566 4334456666666666765433222             13668999999999999 788999999999


Q ss_pred             cEEEEcCCCC-------ceEEEEecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC
Q 022910          130 LVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP  201 (290)
Q Consensus       130 ~i~i~d~~~~-------~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  201 (290)
                      +|++|++.++       .++..+.+|...|.+++|+|.+ ++|++++.|+.|++||+++++.+..+..|...|.+++|+|
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp  178 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL  178 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence            9999999765       3567788999999999999975 6999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCccc-CeEEEEEcCCCCEEEEEe----CCCcEEEEEcCCCc-EEEEEc
Q 022910          202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE-GLTCLTISADSTLALSGS----KDGSVHMVNITTGK-VVSSLV  275 (290)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~----~dg~i~~wd~~~~~-~~~~~~  275 (290)
                      ++.+|++++.|+.|++||+++++.+..+..   |.. .+..+.|.+++..|++++    .|+.|++||+++.. ++....
T Consensus       179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~---H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~  255 (493)
T PTZ00421        179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEA---HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD  255 (493)
T ss_pred             CCCEEEEecCCCEEEEEECCCCcEEEEEec---CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence            999999999999999999999998887776   433 345678898877777654    47899999998754 444444


Q ss_pred             cC-CCcEEEEEEecCC
Q 022910          276 SH-TDSIECIGFSRSE  290 (290)
Q Consensus       276 ~~-~~~v~~i~~s~d~  290 (290)
                      .+ ...+....|++++
T Consensus       256 ~d~~~~~~~~~~d~d~  271 (493)
T PTZ00421        256 LDQSSALFIPFFDEDT  271 (493)
T ss_pred             cCCCCceEEEEEcCCC
Confidence            33 2355556677664

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-30  Score=195.76  Aligned_cols=229  Identities=21%  Similarity=0.355  Sum_probs=188.7

Q ss_pred             CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC--EEEEEeC
Q 022910           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGL  127 (290)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~  127 (290)
                      ......++..+..|.++|+++|.+   +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.+...  +|++|+.
T Consensus        29 ~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd  105 (362)
T KOG0294|consen   29 VKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD  105 (362)
T ss_pred             cceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC
Confidence            344567789999999999999985   47999999999999999999998998989999999999998765  8999999


Q ss_pred             CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec------------------
Q 022910          128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG------------------  189 (290)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------  189 (290)
                      ||.|.+|+...-.++..+++|.+.|+.++.+|.+++.++.+.|+.+++|++-+++.-..+.-                  
T Consensus       106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV  185 (362)
T ss_pred             CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999977653222210                  


Q ss_pred             ---------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEE--cC
Q 022910          190 ---------------------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI--SA  246 (290)
Q Consensus       190 ---------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--~~  246 (290)
                                           ....+.++.|. ++..|++|..++.|.+||.....+...+..   |...|..+.+  .|
T Consensus       186 ~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A---H~~RVK~i~~~~~~  261 (362)
T KOG0294|consen  186 SGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA---HENRVKDIASYTNP  261 (362)
T ss_pred             EeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec---chhheeeeEEEecC
Confidence                                 01123344443 455688888999999999988887777777   7888888874  46


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCC-----cEEEEEccCCCcEEEEEE
Q 022910          247 DSTLALSGSKDGSVHMVNITTG-----KVVSSLVSHTDSIECIGF  286 (290)
Q Consensus       247 ~~~~l~~~~~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~i~~  286 (290)
                      ++.+|+++++||.|++||+...     +++..+.. +..++|+..
T Consensus       262 ~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  262 EHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             CceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence            7889999999999999999765     45555554 456666654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.98  E-value=4.9e-31  Score=207.52  Aligned_cols=232  Identities=23%  Similarity=0.350  Sum_probs=201.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      .....+|.|..++|+++.|.+ .++.+++++.|+.+++|++...+...++.+|+..|+++.|......+++|+.|.+|++
T Consensus       209 ~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~  287 (459)
T KOG0288|consen  209 SELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKL  287 (459)
T ss_pred             hhhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhh
Confidence            446778888899999999999 6667778889999999999999999999999999999999877767999999999999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  213 (290)
                      ||+....+..++- ....+..|..+  ...+++|-.|+.|++||+++..+......++ .|+++..++++..|++++.|.
T Consensus       288 WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDd  363 (459)
T KOG0288|consen  288 WDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDD  363 (459)
T ss_pred             hhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCC
Confidence            9999987776654 33446666665  5578889999999999999999999888665 999999999999999999999


Q ss_pred             eEEEEcCCCCeeeEEEeCCCC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCC--cEEEEEEecCC
Q 022910          214 TLRVWNPKSGENIHVIRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD--SIECIGFSRSE  290 (290)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~v~~i~~s~d~  290 (290)
                      ++.+.|+++.....++..... ..+.++.+.|||++.|+++|+.||.|+||++.++++...+.....  .|++++|+|.|
T Consensus       364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG  443 (459)
T KOG0288|consen  364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG  443 (459)
T ss_pred             ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC
Confidence            999999999988777764332 334589999999999999999999999999999999999886554  59999999976

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=2.6e-30  Score=217.04  Aligned_cols=230  Identities=22%  Similarity=0.337  Sum_probs=207.4

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      .++++++..  +-+.|..|.| +.+++++|...|.+.+||+.....+.+++.|.+.|+.++.+|++..+++||.|.+|++
T Consensus       404 ~kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkf  480 (888)
T KOG0306|consen  404 LKCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKF  480 (888)
T ss_pred             cceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEE
Confidence            444555543  3788999999 8899999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCC-----CceE--------EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEc
Q 022910          134 WDPSS-----GNLK--------CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT  200 (290)
Q Consensus       134 ~d~~~-----~~~~--------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  200 (290)
                      |+..-     +...        .++. -...|.|+.+||++++|+++--|.++++|-+.+.+....+.+|.-||.||..+
T Consensus       481 Wdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS  559 (888)
T KOG0306|consen  481 WDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS  559 (888)
T ss_pred             EeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEecc
Confidence            99631     1111        1222 23469999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCc
Q 022910          201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS  280 (290)
Q Consensus       201 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  280 (290)
                      |+++.++||+.|..|+||-+.=|.+-+.+..   |...|.++.|.|...++++++.|+.|+.||-...+.++++.+|...
T Consensus       560 ~DSklivTgSADKnVKiWGLdFGDCHKS~fA---HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e  636 (888)
T KOG0306|consen  560 PDSKLIVTGSADKNVKIWGLDFGDCHKSFFA---HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE  636 (888)
T ss_pred             CCcCeEEeccCCCceEEeccccchhhhhhhc---ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe
Confidence            9999999999999999999999998888776   8899999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCC
Q 022910          281 IECIGFSRSE  290 (290)
Q Consensus       281 v~~i~~s~d~  290 (290)
                      |++++.+|+|
T Consensus       637 v~cLav~~~G  646 (888)
T KOG0306|consen  637 VWCLAVSPNG  646 (888)
T ss_pred             eeeeEEcCCC
Confidence            9999999986

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.6e-30  Score=206.33  Aligned_cols=221  Identities=22%  Similarity=0.353  Sum_probs=195.2

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC-----
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-----  137 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-----  137 (290)
                      -.++|.|++-+| .+.+|+.|+-.|.|++|.+.+|.++..+.+|-..|+|+.|+-|+.+|++|+.||.|.+|.+.     
T Consensus        80 ~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   80 LPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             cccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            467899999999 88888888899999999999999999999999999999999999999999999999999863     


Q ss_pred             ----CCceEEEEecCCCCEEEEEEcCC--CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC
Q 022910          138 ----SGNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (290)
Q Consensus       138 ----~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  211 (290)
                          +-++++.+..|.-+|+.+...+.  ..++++++.|.++++||+..+..+.++. ....+.++++.|.++.+++|+.
T Consensus       159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~  237 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTE  237 (476)
T ss_pred             ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCC
Confidence                34678889999999999998764  4599999999999999999999888876 6788999999999999999999


Q ss_pred             CCeEEEEcCCCCe----------------eeEEEeCCCCccc--CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 022910          212 DATLRVWNPKSGE----------------NIHVIRGHPYHTE--GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS  273 (290)
Q Consensus       212 dg~i~i~d~~~~~----------------~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  273 (290)
                      +|.|.+.++....                .+..+.+   |..  .|+|++.+-||.+|++|+.||.|+|||+.+.+++++
T Consensus       238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G---h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG---HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             cceEEeeehhcCCcccccccccccccccceeeeecc---ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence            9999998775432                2233334   444  999999999999999999999999999999999999


Q ss_pred             EccCCCcEEEEEEec
Q 022910          274 LVSHTDSIECIGFSR  288 (290)
Q Consensus       274 ~~~~~~~v~~i~~s~  288 (290)
                      +....++|+.+.+.|
T Consensus       315 l~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  315 LQTSKGPVTNLQINP  329 (476)
T ss_pred             HhhhccccceeEeec
Confidence            986688999888843

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.5e-30  Score=219.79  Aligned_cols=213  Identities=19%  Similarity=0.336  Sum_probs=182.1

Q ss_pred             CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC-CCCEEEEEeCC
Q 022910           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLD  128 (290)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d  128 (290)
                      .....+|++.|.||.+.|..|+|+. + ++|++++.|.+||||++....+++.|. |..-|+|++|+| |.+||++|+-|
T Consensus       355 f~f~ekP~~ef~GHt~DILDlSWSK-n-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD  431 (712)
T KOG0283|consen  355 FVFSEKPFCEFKGHTADILDLSWSK-N-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLD  431 (712)
T ss_pred             ccccccchhhhhccchhheeccccc-C-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccc
Confidence            3346789999999999999999996 4 577799999999999999999999998 999999999999 67899999999


Q ss_pred             CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec--------CCCCeEEEEEc
Q 022910          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--------HGSSVTCGDFT  200 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~  200 (290)
                      |.|+||++...+.+.-...+ .-|++++|.|+|+..++|+.+|.+++|++...+....+..        ....|+++.|.
T Consensus       432 ~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~  510 (712)
T KOG0283|consen  432 GKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFF  510 (712)
T ss_pred             cceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEec
Confidence            99999999987766554444 5699999999999999999999999999988776554321        12379999999


Q ss_pred             C-CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          201 P-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       201 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      | +...+++.+.|..|||||.+...++..+++.....+ -....|+.+|++|++++.|..|++|+...
T Consensus       511 p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S-Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  511 PGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS-QISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             CCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc-ceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            8 445688888999999999999899999988764433 34568889999999999999999999743

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.6e-31  Score=217.40  Aligned_cols=225  Identities=21%  Similarity=0.455  Sum_probs=198.1

Q ss_pred             cCCcCEE---EEEECCCCCcEEEEecCCCcEEEEEccCCe------eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           62 GHSDEVY---SVACSPTDATLVATGGGDDKGFFWRINQGD------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        62 ~h~~~v~---~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      .|...|.   .+..++.++++|+||+.||.|++|++....      ...+++.|...|..+....+++.|+++|.|-+|+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK   98 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK   98 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence            3444555   566666678889999999999999987532      3667888999999999999999999999999999


Q ss_pred             EEcCCCC--ceEEEEecCCCCEEEEEE-cCCCCEEEEeeCCCeEEEEECCccc--EE--------Eeee-cCCCCeEEEE
Q 022910          133 IWDPSSG--NLKCTLEGPGGGVEWVSW-HPRGHIVLAGSEDSTVWMWNADRAA--YL--------NMFS-GHGSSVTCGD  198 (290)
Q Consensus       133 i~d~~~~--~~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~dg~i~i~d~~~~~--~~--------~~~~-~~~~~i~~~~  198 (290)
                      +|+...+  -+..++..|...|.|+++ .++..++|+|+-|+.|.+||+.++.  .+        ..+. ++..+|++++
T Consensus        99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA  178 (735)
T KOG0308|consen   99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA  178 (735)
T ss_pred             EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence            9999887  566788889999999999 7788899999999999999999772  22        2222 6788999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910          199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       199 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  278 (290)
                      ..+.|..|++|+..+.|++||.++++.+..+++   |...|..+..++||..++++++||+|++||+...+++.++..|.
T Consensus       179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG---HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~  255 (735)
T KOG0308|consen  179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG---HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK  255 (735)
T ss_pred             cCCcceEEEecCcccceEEeccccccceeeeec---cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence            999999999999999999999999999999987   89999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEecC
Q 022910          279 DSIECIGFSRS  289 (290)
Q Consensus       279 ~~v~~i~~s~d  289 (290)
                      ..|+++.-+|+
T Consensus       256 e~VWaL~~~~s  266 (735)
T KOG0308|consen  256 EGVWALQSSPS  266 (735)
T ss_pred             CceEEEeeCCC
Confidence            99999988764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=7.6e-30  Score=202.07  Aligned_cols=222  Identities=21%  Similarity=0.387  Sum_probs=202.2

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (290)
                      ..|.++...| ....+++|+.|..+.++|...++.+..+++|...|+.+.|+|+...+++++.|..|+||..........
T Consensus       220 pgi~ald~~~-s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~  298 (506)
T KOG0289|consen  220 PGITALDIIP-SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS  298 (506)
T ss_pred             CCeeEEeecC-CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence            4688888888 467888999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (290)
Q Consensus       145 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  222 (290)
                      ...|..+|+.+..+|.|.||++++.||+..+.|++++..+......  .-.+++.+|+|+|.+|.+|..||.|+|||+.+
T Consensus       299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks  378 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS  378 (506)
T ss_pred             cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence            8899999999999999999999999999999999999888776642  34589999999999999999999999999999


Q ss_pred             CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC-CcEEEEEEecCC
Q 022910          223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT-DSIECIGFSRSE  290 (290)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~i~~s~d~  290 (290)
                      +.....|.+   |.++|..++|+.+|-+|++++.|+.|++||++.-+.+.++.... .+|.++.|.+.|
T Consensus       379 ~~~~a~Fpg---ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SG  444 (506)
T KOG0289|consen  379 QTNVAKFPG---HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSG  444 (506)
T ss_pred             ccccccCCC---CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCC
Confidence            987777777   89999999999999999999999999999999999888887543 378899888765

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.6e-30  Score=207.35  Aligned_cols=221  Identities=25%  Similarity=0.425  Sum_probs=192.6

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      .++|.+++|+|..+.-+|+.+. -.+.||+..+....+.+......+.++.|..||++|++|...|.|+|||+.+...+.
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR  104 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR  104 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence            4689999999988877776653 679999999888888888888999999999999999999999999999987767788


Q ss_pred             EEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEcCC
Q 022910          144 TLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPK  221 (290)
Q Consensus       144 ~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~  221 (290)
                      .+.+|..++..+.|+|+++ .|++|+.|+.+++||+.+......+.+|...|+|.+|+|. +..+++|+.||.|++||++
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence            8999999999999999655 7778888999999999999877789999999999999995 4588999999999999999


Q ss_pred             CC-eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEEccCCCcEEEEEEecCC
Q 022910          222 SG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       222 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +. ..+..+.    |..+|..+.+-|.|..+++++. ..|++||+.+| +.+..+..|...|+|+++..++
T Consensus       185 ~~~~~v~eln----hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~  250 (487)
T KOG0310|consen  185 SLTSRVVELN----HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS  250 (487)
T ss_pred             cCCceeEEec----CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCC
Confidence            87 5555555    8999999999999999998875 48999999955 5556666699999999998754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.1e-29  Score=221.11  Aligned_cols=234  Identities=22%  Similarity=0.330  Sum_probs=203.6

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC------------------CeeeeeeccccCCEEEEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------------GDWASEIQGHKDSVSSLA  114 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------------~~~~~~~~~~~~~i~~~~  114 (290)
                      -...+.+...|.+.|.|+.|+| ++.+||+|+.|+.|.||....                  .+.+..+.+|...|..++
T Consensus        58 l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~  136 (942)
T KOG0973|consen   58 LPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN  136 (942)
T ss_pred             cchhheeeccccCceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec
Confidence            4678899999999999999999 889999999999999999872                  135667889999999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC----
Q 022910          115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH----  190 (290)
Q Consensus       115 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----  190 (290)
                      |+|++.+|++++.|++|.||+..+.+.+.++.+|.+.|..+.|.|-|++||+-+.|++|++|.+......+.+..+    
T Consensus       137 Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~  216 (942)
T KOG0973|consen  137 WSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES  216 (942)
T ss_pred             cCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999998776666666543    


Q ss_pred             --CCCeEEEEEcCCCCEEEEEe----CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-----CCC----------
Q 022910          191 --GSSVTCGDFTPDGKTICTGS----DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-----DST----------  249 (290)
Q Consensus       191 --~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~----------  249 (290)
                        ...+..+.|+|+|.+|++..    .-..+.|.+..+.+.-..+-+   |..++.++.|+|     ..+          
T Consensus       217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG---H~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG---HSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec---CCCceEEEEeChHHhccccccCCccCCCcc
Confidence              34578899999999998753    234788998887777777777   788999999998     122          


Q ss_pred             --EEEEEeCCCcEEEEEcCCCcEEEEEc-cCCCcEEEEEEecCC
Q 022910          250 --LALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSRSE  290 (290)
Q Consensus       250 --~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~s~d~  290 (290)
                        .+|+|+.|++|.||.....+++..+. -.+..|..++|+|||
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG  337 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDG  337 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCC
Confidence              68899999999999998888876654 346799999999997

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3e-28  Score=178.35  Aligned_cols=226  Identities=19%  Similarity=0.361  Sum_probs=188.8

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-----------e----eeeeeccccCCEEEEEECCCCCEEEEEe
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-----------D----WASEIQGHKDSVSSLAFSMDGQLLASGG  126 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----------~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~  126 (290)
                      ..+..|.+++|+| .+.+.++|+...+++|......           .    ..++-+-|.+.|.|.+|+|.|.+|++|+
T Consensus        30 ~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   30 EDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             cchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence            4567899999999 7789999999999998865321           0    1122346889999999999999999999


Q ss_pred             CCCcEEEEcCCCCce-----EEEEecCCCCEEEEEEcCC----CCEEEEeeC-CCeEEEEECCcccEEEeeecCCCCeEE
Q 022910          127 LDGLVQIWDPSSGNL-----KCTLEGPGGGVEWVSWHPR----GHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTC  196 (290)
Q Consensus       127 ~dg~i~i~d~~~~~~-----~~~~~~~~~~i~~i~~~~~----~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~  196 (290)
                      .|.+|++.-.+....     -..+.-|.+.|+.++|-.+    +.+|++++. |..|++-|..+++.+..+.+|.+.|.+
T Consensus       109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila  188 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA  188 (350)
T ss_pred             CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence            999999987654322     3467779999999999643    457777654 678899999999999999999999987


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC----CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 022910          197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS  272 (290)
Q Consensus       197 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  272 (290)
                      + ++-++-.+++|+.|.+|++||++-..++.++....    ...+.|.+++..|.|++|++|-.|....+||++.++.++
T Consensus       189 l-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq  267 (350)
T KOG0641|consen  189 L-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ  267 (350)
T ss_pred             E-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence            6 45578899999999999999999888887765332    134679999999999999999999999999999999999


Q ss_pred             EEccCCCcEEEEEEecC
Q 022910          273 SLVSHTDSIECIGFSRS  289 (290)
Q Consensus       273 ~~~~~~~~v~~i~~s~d  289 (290)
                      ++..|...|+++.|||.
T Consensus       268 ~f~phsadir~vrfsp~  284 (350)
T KOG0641|consen  268 RFHPHSADIRCVRFSPG  284 (350)
T ss_pred             eeCCCccceeEEEeCCC
Confidence            99999999999999995

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=7.8e-32  Score=225.26  Aligned_cols=230  Identities=26%  Similarity=0.488  Sum_probs=216.1

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (290)
                      .+.+..|...|.|+..-. ....+++|+.+..+-+|.+.....+..+.+|..+|.++.|++...+|++|+.+|+|++||+
T Consensus        21 ~~~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl   99 (825)
T KOG0267|consen   21 TREFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL   99 (825)
T ss_pred             chhhhhhhhhhceeeeec-cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence            356678999999999854 7788999999999999999888888889999999999999999999999999999999999


Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  216 (290)
                      +..+.++++.+|...+..+.|+|-+.+++.|+.|+.+++||++..-+...+.+|...+..+.|+|+|++++.++.|..++
T Consensus       100 eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  100 EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK  179 (825)
T ss_pred             hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence            99999999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             EEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      |||+..|+....|..   |...+..+.|+|..-++++|+.|++|++||+++...+.........|.+.+|+|+|
T Consensus       180 i~d~~agk~~~ef~~---~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~  250 (825)
T KOG0267|consen  180 IWDLTAGKLSKEFKS---HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDG  250 (825)
T ss_pred             eeccccccccccccc---ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCc
Confidence            999999998888887   78899999999999999999999999999999999999998888999999999986

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.5e-29  Score=201.61  Aligned_cols=226  Identities=28%  Similarity=0.412  Sum_probs=199.8

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (290)
                      ++|.+.|.+++.++ ++++||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....+++++.|+.|++|++....
T Consensus       199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s  277 (479)
T KOG0299|consen  199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS  277 (479)
T ss_pred             ccccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence            48999999999999 89999999999999999999999999999999999999999888899999999999999999999


Q ss_pred             eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910          141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (290)
Q Consensus       141 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  220 (290)
                      .+.++.+|...|..|....-.+.+-+|+.|+++++|++. ......+.++.+.+.|++|-. ...|++|+.+|.|.+|++
T Consensus       278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSL  355 (479)
T ss_pred             HHHHHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeee
Confidence            999999999999999988888888888899999999994 344556677888999999984 567999999999999999


Q ss_pred             CCCeeeEEEeCCCC---------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----cEEEEEccCCCcEEEEEEe
Q 022910          221 KSGENIHVIRGHPY---------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTG----KVVSSLVSHTDSIECIGFS  287 (290)
Q Consensus       221 ~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~~~~~v~~i~~s  287 (290)
                      ...+++.+....+.         ++..|++++..|...++++|+.+|.|++|-+..+    .++..+. -.+-|++++|+
T Consensus       356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~  434 (479)
T KOG0299|consen  356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS  434 (479)
T ss_pred             cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence            98888776653321         2237899999999999999999999999999877    4666666 47899999999


Q ss_pred             cCC
Q 022910          288 RSE  290 (290)
Q Consensus       288 ~d~  290 (290)
                      ++|
T Consensus       435 ~sg  437 (479)
T KOG0299|consen  435 NSG  437 (479)
T ss_pred             cCC
Confidence            986

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=7.8e-30  Score=193.29  Aligned_cols=188  Identities=27%  Similarity=0.443  Sum_probs=169.8

Q ss_pred             eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC-CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEE
Q 022910           99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN  177 (290)
Q Consensus        99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d  177 (290)
                      ++..+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++. .-+-...+++|.++|..+.|.++++.+++++.|.+++.||
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            344567899999999999999999999999999999954 3345667889999999999999999999999999999999


Q ss_pred             CCcccEEEeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC
Q 022910          178 ADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  256 (290)
                      .++++.++++++|..-+.++.-+.-|. ++.+++.||++++||+|+...++++.    ..-.++++.|...+..+.+|+-
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----~kyqltAv~f~d~s~qv~sggI  194 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----NKYQLTAVGFKDTSDQVISGGI  194 (338)
T ss_pred             cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----cceeEEEEEecccccceeeccc
Confidence            999999999999999999988555454 55678899999999999988887776    4678999999999999999999


Q ss_pred             CCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       257 dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      |+.|++||++....+..+.+|..+|+++..+|+|
T Consensus       195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g  228 (338)
T KOG0265|consen  195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG  228 (338)
T ss_pred             cCceeeeccccCcceEEeecccCceeeEEeccCC
Confidence            9999999999999999999999999999999986

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.9e-28  Score=177.21  Aligned_cols=229  Identities=23%  Similarity=0.356  Sum_probs=192.4

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee-----eeeeccccCCEEEEEECCC----CCEEEEEe-
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLAFSMD----GQLLASGG-  126 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~~i~~~~~~~~----~~~l~~~~-  126 (290)
                      .+.-+.|++.|+|.+|+| .+.+|++|+.|.+|++..++....     -..+.-|.+.|..++|..+    +..|++++ 
T Consensus        82 ~kr~khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga  160 (350)
T KOG0641|consen   82 CKRNKHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA  160 (350)
T ss_pred             eeeccccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence            344467899999999999 889999999999999987765322     2346679999999999642    44677664 


Q ss_pred             CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-------CCCCeEEEEE
Q 022910          127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-------HGSSVTCGDF  199 (290)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~  199 (290)
                      .|..|++-|..+++..+.+.+|.+.|.++- +-++-.+++|+.|.+|++||++-..++..+..       ..+.|.+++.
T Consensus       161 gdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  161 GDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             CcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence            478899999999999999999999888763 33688999999999999999999888877642       2367999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----cEEEEEc
Q 022910          200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG----KVVSSLV  275 (290)
Q Consensus       200 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~  275 (290)
                      .|.|++|++|-.|....+||++.++.++.+..   |...|.++.|+|...||++++.|..|++-|+...    -++....
T Consensus       240 dpsgrll~sg~~dssc~lydirg~r~iq~f~p---hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~  316 (350)
T KOG0641|consen  240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHP---HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA  316 (350)
T ss_pred             CCCcceeeeccCCCceEEEEeeCCceeeeeCC---CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE
Confidence            99999999999999999999999999988876   8899999999999999999999999999998642    2344555


Q ss_pred             cCCCcEEEEEEecCC
Q 022910          276 SHTDSIECIGFSRSE  290 (290)
Q Consensus       276 ~~~~~v~~i~~s~d~  290 (290)
                      .|...+-.+.|+|.+
T Consensus       317 ehkdk~i~~rwh~~d  331 (350)
T KOG0641|consen  317 EHKDKAIQCRWHPQD  331 (350)
T ss_pred             eccCceEEEEecCcc
Confidence            788888889999864

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=2.7e-28  Score=209.57  Aligned_cols=189  Identities=16%  Similarity=0.265  Sum_probs=159.4

Q ss_pred             ecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCc--------eEEEEecCCCCEE
Q 022910           83 GGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN--------LKCTLEGPGGGVE  153 (290)
Q Consensus        83 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~  153 (290)
                      |+..+.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+||++.++.        ++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            566789999998887788889999999999999996 7899999999999999997642        3446778999999


Q ss_pred             EEEEcCCCCE-EEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCC
Q 022910          154 WVSWHPRGHI-VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH  232 (290)
Q Consensus       154 ~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  232 (290)
                      +++|+|++.. |++++.|+.|++||+++++.+..+. +...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+ 
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g-  207 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI-  207 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec-
Confidence            9999998875 5789999999999999998777775 567899999999999999999999999999999998888877 


Q ss_pred             CCcccCe-----EEEEEcCCCCEEEEEeCCC----cEEEEEcCC-CcEEEEEc
Q 022910          233 PYHTEGL-----TCLTISADSTLALSGSKDG----SVHMVNITT-GKVVSSLV  275 (290)
Q Consensus       233 ~~~~~~v-----~~~~~~~~~~~l~~~~~dg----~i~~wd~~~-~~~~~~~~  275 (290)
                        |...+     ....|++++.+|++++.++    .|++||+++ ++++..+.
T Consensus       208 --H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~  258 (568)
T PTZ00420        208 --HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS  258 (568)
T ss_pred             --ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence              44433     2334568889999988774    799999995 56666544

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=3e-29  Score=218.51  Aligned_cols=228  Identities=29%  Similarity=0.430  Sum_probs=199.1

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEec--CCCcEEEEEccC------------CeeeeeeccccCCEEEEEECCCCCEEEEEe
Q 022910           61 SGHSDEVYSVACSPTDATLVATGG--GDDKGFFWRINQ------------GDWASEIQGHKDSVSSLAFSMDGQLLASGG  126 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  126 (290)
                      ..+...|.++..+| ++..+|||+  .||.++||+...            .+.+..+..|.+.|.|+.|+|||++||+|+
T Consensus        10 ~H~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS   88 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS   88 (942)
T ss_pred             ccCCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence            34566799999999 889999999  899999998753            245566778999999999999999999999


Q ss_pred             CCCcEEEEcCCC------------------CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee
Q 022910          127 LDGLVQIWDPSS------------------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS  188 (290)
Q Consensus       127 ~dg~i~i~d~~~------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  188 (290)
                      .|+.|.||....                  .+....+.+|.+.|..++|+|++.+|++++.|++|.+|+.++.+.+.++.
T Consensus        89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~  168 (942)
T KOG0973|consen   89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR  168 (942)
T ss_pred             CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence            999999998762                  13567788999999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC---cccCeEEEEEcCCCCEEEEEeC----CCcEE
Q 022910          189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSK----DGSVH  261 (290)
Q Consensus       189 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~----dg~i~  261 (290)
                      +|.+.|..+.|.|-|+||++-+.|++|+||.+.+....+.+..+..   .......+.|+|||++|++...    -.++.
T Consensus       169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~  248 (942)
T KOG0973|consen  169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA  248 (942)
T ss_pred             cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence            9999999999999999999999999999999877666666654332   2345788999999999998743    34799


Q ss_pred             EEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          262 MVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       262 ~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      |.+-.+.+.-..|.+|.+++.++.|+|.
T Consensus       249 IieR~tWk~~~~LvGH~~p~evvrFnP~  276 (942)
T KOG0973|consen  249 IIERGTWKVDKDLVGHSAPVEVVRFNPK  276 (942)
T ss_pred             EEecCCceeeeeeecCCCceEEEEeChH
Confidence            9999899999999999999999999983

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.2e-29  Score=184.95  Aligned_cols=185  Identities=23%  Similarity=0.445  Sum_probs=169.0

Q ss_pred             eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEEC
Q 022910           99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA  178 (290)
Q Consensus        99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~  178 (290)
                      ....+..++++|..+.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.++..|++|+.|..+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC--eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC
Q 022910          179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG--ENIHVIRGHPYHTEGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  256 (290)
                      .+++.++++.+|...|..++|+.....+++|+-|..+++||.++.  ++++.+..   ....|.++...  +..+++|+.
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde---a~D~V~Si~v~--~heIvaGS~  163 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE---AKDGVSSIDVA--EHEIVAGSV  163 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh---hcCceeEEEec--ccEEEeecc
Confidence            999999999999999999999999999999999999999999864  45555554   56778888875  668999999


Q ss_pred             CCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       257 dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ||+++.||++.|+......+  .+|++++|++||
T Consensus       164 DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~  195 (307)
T KOG0316|consen  164 DGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDG  195 (307)
T ss_pred             CCcEEEEEeecceeehhhcC--CcceeEEecCCC
Confidence            99999999999998887776  589999999986

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=8.7e-29  Score=188.32  Aligned_cols=220  Identities=20%  Similarity=0.357  Sum_probs=180.8

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      ...|.++.|+|. +..|++++.||++++|++........++ |..++.+++|.+ ...+++|+.||.|+.+|+.++... 
T Consensus        13 ~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-   88 (323)
T KOG1036|consen   13 EDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-   88 (323)
T ss_pred             hhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence            678999999984 4455566799999999999887666666 999999999986 567999999999999999998765 


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910          144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (290)
Q Consensus       144 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  223 (290)
                      .+-.|..+|+||.+++....+++|+.|++|++||.+.......+.. ...|.++...  ++.|++|+.+..|.+||+++.
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence            4455889999999999889999999999999999998655555543 3478887764  778999999999999999864


Q ss_pred             eeeE---------------EE---------------------------------eCCCC------cccCeEEEEEcCCCC
Q 022910          224 ENIH---------------VI---------------------------------RGHPY------HTEGLTCLTISADST  249 (290)
Q Consensus       224 ~~~~---------------~~---------------------------------~~~~~------~~~~v~~~~~~~~~~  249 (290)
                      ....               .+                                 +.|..      .--+|++++|+|-..
T Consensus       166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~  245 (323)
T KOG1036|consen  166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG  245 (323)
T ss_pred             cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence            3211               11                                 11100      123689999999988


Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       250 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .|+||+.||.|.+||+.+.+.+..+......|.+++|+.+|
T Consensus       246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG  286 (323)
T KOG1036|consen  246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG  286 (323)
T ss_pred             eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC
Confidence            99999999999999999999999998888899999999886

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.3e-29  Score=187.82  Aligned_cols=202  Identities=25%  Similarity=0.415  Sum_probs=181.0

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (290)
                      |+--|.+++|+. +.++|++|+.+..+|||+++..+ +...+.+|.+.|..+.|+...+.|++.+.|++||+||.++++.
T Consensus        99 hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~  177 (334)
T KOG0278|consen   99 HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE  177 (334)
T ss_pred             hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence            777899999998 77888899999999999998754 4567889999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC
Q 022910          142 KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK  221 (290)
Q Consensus       142 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  221 (290)
                      ++++.. ..+++++.++++|++|.++.. +.|.+||..+...++.+. ....|.+..++|+...+++|+.|..++.||..
T Consensus       178 v~sL~~-~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~  254 (334)
T KOG0278|consen  178 VQSLEF-NSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYN  254 (334)
T ss_pred             EEEEec-CCCCcceeeccCCCEEEEecC-ceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEecc
Confidence            999874 456999999999988777654 789999999999888887 45678999999999999999999999999999


Q ss_pred             CCeeeEEE-eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 022910          222 SGENIHVI-RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV  271 (290)
Q Consensus       222 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  271 (290)
                      ++..+..+ ++   |.++|.|+.|+|+|...++|+.||+|++|.+..++..
T Consensus       255 TgeEi~~~nkg---h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  255 TGEEIGSYNKG---HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCceeeecccC---CCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            99988775 44   8899999999999999999999999999998776643

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=3.6e-29  Score=195.15  Aligned_cols=203  Identities=23%  Similarity=0.448  Sum_probs=178.0

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-------------------------CeeeeeeccccCCE
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-------------------------GDWASEIQGHKDSV  110 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------------------------~~~~~~~~~~~~~i  110 (290)
                      .+..-+||...|-+++..+ ++..+++|+.|..|.||+..+                         ..++..+.+|..+|
T Consensus       185 ~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~V  263 (423)
T KOG0313|consen  185 ALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPV  263 (423)
T ss_pred             HHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccce
Confidence            3444459999999999999 888999999999999999321                         22456678999999


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---EEEee
Q 022910          111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMF  187 (290)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~  187 (290)
                      .++.|++ ...+++++.|.+|+.||+.++....++.+.. .+.++.++|..++|++|+.|..|++||.+++.   ....+
T Consensus       264 s~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~  341 (423)
T KOG0313|consen  264 SSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL  341 (423)
T ss_pred             eeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee
Confidence            9999997 7789999999999999999999998888654 59999999999999999999999999999863   56788


Q ss_pred             ecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          188 SGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       188 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      .+|...|.++.|+| +...|++++.|+++++||+|+.+ ++..+.+   |...|-++.|. ++.++++|+.|.+|+++.-
T Consensus       342 ~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~---h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  342 IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG---HNDKVLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc---CCceEEEEecc-CCceEEeccCcceEEEecc
Confidence            89999999999999 45667899999999999999988 7888877   78999999998 4679999999999999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3e-30  Score=217.28  Aligned_cols=219  Identities=21%  Similarity=0.361  Sum_probs=188.6

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccC---CeeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCce
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL  141 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~  141 (290)
                      .+..+.|+....++|||++..|.|.+||+..   .+.+..+..|...++++.|++- ..+|++||.||+|++||++..+.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            4556888877889999999999999999987   5666788899999999999874 45899999999999999999999


Q ss_pred             EEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910          142 KCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (290)
Q Consensus       142 ~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  219 (290)
                      ..++.+....|+.+.|+| .+.+|+++...|.+.+||+|.. ++...+.+|.++|.|+.|+|++.+||+|+.|+.|+|||
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            989988888999999999 5779999999999999999975 56788899999999999999999999999999999999


Q ss_pred             CCCCee--eEEEeCCCCcccCeEEEEEcCCCC-EEEEEeC--CCcEEEEEcCCC-cEEEEEccCCCcEEEEEEec
Q 022910          220 PKSGEN--IHVIRGHPYHTEGLTCLTISADST-LALSGSK--DGSVHMVNITTG-KVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       220 ~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~--dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~s~  288 (290)
                      +.+++.  ..++.    ...++.++.|-|..+ .|++++.  |-.|+|||++.. -+..++..|...++.++|-.
T Consensus       249 ~t~~~~~~~~tIn----Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  249 MTDSRAKPKHTIN----TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             ccCCCccceeEEe----ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence            976554  33444    467899999999665 4555544  678999999764 35678889999999999954

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.1e-28  Score=207.46  Aligned_cols=226  Identities=24%  Similarity=0.363  Sum_probs=201.8

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (290)
                      ...+.||...|.+++++. +..++++|+ .+.+++|+..+.+++.++..  +-+.+..|.|.++++++|...|.+.+||+
T Consensus       366 ~i~~~GHR~dVRsl~vS~-d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl  441 (888)
T KOG0306|consen  366 NIEIGGHRSDVRSLCVSS-DSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDL  441 (888)
T ss_pred             eeeeccchhheeEEEeec-CceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEe
Confidence            356789999999999998 666776664 68999999999999999973  37899999999999999999999999999


Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-----cEEEee-------ecCCCCeEEEEEcCCCC
Q 022910          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-----AYLNMF-------SGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~-------~~~~~~i~~~~~~~~~~  204 (290)
                      .+...+.++++|.+.|+.++.+|++..+++|+.|.+|++||+.-.     ...+.+       -.....|.|+.+||+++
T Consensus       442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK  521 (888)
T ss_pred             ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence            999999999999999999999999999999999999999997421     111111       12456799999999999


Q ss_pred             EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEE
Q 022910          205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI  284 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i  284 (290)
                      +|+++--|.+|+||-+.+.+-...+.+   |.-+|.||..+||+++++||+.|.+|++|=+.-|.+-+++.+|...|.++
T Consensus       522 ~LaVsLLdnTVkVyflDtlKFflsLYG---HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V  598 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLKFFLSLYG---HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSV  598 (888)
T ss_pred             EEEEEeccCeEEEEEecceeeeeeecc---cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEE
Confidence            999999999999999999888788887   88999999999999999999999999999999999999999999999999


Q ss_pred             EEecC
Q 022910          285 GFSRS  289 (290)
Q Consensus       285 ~~s~d  289 (290)
                      .|-|.
T Consensus       599 ~F~P~  603 (888)
T KOG0306|consen  599 QFLPK  603 (888)
T ss_pred             EEccc
Confidence            99985

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.5e-28  Score=210.41  Aligned_cols=218  Identities=28%  Similarity=0.534  Sum_probs=198.3

Q ss_pred             eeecc-CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee-eccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           58 HIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        58 ~~~~~-h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      ..+.+ |...+.+..|..   ..+++++.+++|++|+..++..+.. +.+|.+.|.++++...+.++++|+.|.++++||
T Consensus       201 ~~~~~~~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd  277 (537)
T KOG0274|consen  201 KVLLGTDDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD  277 (537)
T ss_pred             eeecccCcchhhhheeec---CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence            34443 566788888874   4788999999999999999998888 999999999999987788999999999999999


Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                      +.++++...+.+|...+.++...  ..++++|+.|.+|++|++.++..+..+.+|..+|.++.++  +.++++|+.|+.|
T Consensus       278 ~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  278 CSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV  353 (537)
T ss_pred             cCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence            99999999999999999999874  5578889999999999999999999999999999999997  8899999999999


Q ss_pred             EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEEccCCCcEEEEEE
Q 022910          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGF  286 (290)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~  286 (290)
                      ++||+.+++++..+.+   |...|.++.+.+. ..+++|+.|++|++||+.+. +++.++.+|..-|.++.+
T Consensus       354 ~VW~~~~~~cl~sl~g---H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~  421 (537)
T KOG0274|consen  354 KVWDPRTGKCLKSLSG---HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL  421 (537)
T ss_pred             EEEEhhhceeeeeecC---CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc
Confidence            9999999999999998   8899999988764 89999999999999999999 999999999988877655

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=6.7e-29  Score=197.67  Aligned_cols=213  Identities=22%  Similarity=0.375  Sum_probs=180.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-------eeeeeccccCCEEEEEECCC-CCEEEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-------WASEIQGHKDSVSSLAFSMD-GQLLASG  125 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~i~~~~~~~~-~~~l~~~  125 (290)
                      -.|-..|.||++.-++|+|++...-.|++|+.|++|++||+....       ....+.+|...|..++|++- ...|+++
T Consensus       167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv  246 (422)
T KOG0264|consen  167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV  246 (422)
T ss_pred             CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence            356668999999999999999888899999999999999997632       34567899999999999984 5589999


Q ss_pred             eCCCcEEEEcCC--CCceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcC
Q 022910          126 GLDGLVQIWDPS--SGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP  201 (290)
Q Consensus       126 ~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~  201 (290)
                      +.|+.+.|||++  +.++.....+|.+.+.|++|+| ++..||+|+.|++|++||+|+. +++..+.+|...|.++.|+|
T Consensus       247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP  326 (422)
T KOG0264|consen  247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP  326 (422)
T ss_pred             cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence            999999999999  5677778889999999999999 5668999999999999999986 57788999999999999999


Q ss_pred             -CCCEEEEEeCCCeEEEEcCCCCe-----------eeEEEeCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcC
Q 022910          202 -DGKTICTGSDDATLRVWNPKSGE-----------NIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       202 -~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~  266 (290)
                       ....|++++.|+.+.|||+..-.           +...+-.|.+|...|..+.|+|.. ..|++.+.|+.+.||...
T Consensus       327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence             45778899999999999986422           122333445589999999999965 467778889999999974

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.3e-29  Score=195.19  Aligned_cols=209  Identities=24%  Similarity=0.421  Sum_probs=170.7

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      .+..+++.||..+|..+.|+| +.++|++|+.+..+.+||+.++.....+. ++...+.+++|.|||..+++|+.|+.+.
T Consensus       259 ~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  259 FKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII  337 (519)
T ss_pred             eeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence            556889999999999999999 66677788888899999999999887776 3457899999999999999999999999


Q ss_pred             EEcCCCCc----------------------eEEE-------------------EecCCCCEEEEEEcCCCCEEEEeeCCC
Q 022910          133 IWDPSSGN----------------------LKCT-------------------LEGPGGGVEWVSWHPRGHIVLAGSEDS  171 (290)
Q Consensus       133 i~d~~~~~----------------------~~~~-------------------~~~~~~~i~~i~~~~~~~~l~~~~~dg  171 (290)
                      -|++....                      .+..                   +.....+|+++..+.+++++++--.+.
T Consensus       338 ~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q  417 (519)
T KOG0293|consen  338 MWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQ  417 (519)
T ss_pred             EecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccC
Confidence            99976321                      1100                   011234677778888888887777788


Q ss_pred             eEEEEECCcccEEEeeecCCCC--eEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-C
Q 022910          172 TVWMWNADRAAYLNMFSGHGSS--VTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-D  247 (290)
Q Consensus       172 ~i~i~d~~~~~~~~~~~~~~~~--i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  247 (290)
                      .|.+||++..+.++++.+|...  +-.-+|-- +..++++|+.|+.|+||+..+++++..+.+   |...|++++|+| +
T Consensus       418 ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG---Hs~~vNcVswNP~~  494 (519)
T KOG0293|consen  418 EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG---HSKTVNCVSWNPAD  494 (519)
T ss_pred             eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC---CcceeeEEecCCCC
Confidence            8888888877788888887654  33334544 457899999999999999999999999998   889999999999 6


Q ss_pred             CCEEEEEeCCCcEEEEEcC
Q 022910          248 STLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       248 ~~~l~~~~~dg~i~~wd~~  266 (290)
                      ..++|+|+.||+|++|-..
T Consensus       495 p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  495 PEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             HHHhhccCCCCeEEEecCC
Confidence            7899999999999999865

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=9.5e-29  Score=188.53  Aligned_cols=236  Identities=19%  Similarity=0.323  Sum_probs=197.3

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--cccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      -..+++|-.|.++|+++.|+| ...+|++|+.|++|++||+.+....+.++  ....+|.++.|+|.|.+|++|..-.++
T Consensus       162 hPvIRTlYDH~devn~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~  240 (430)
T KOG0640|consen  162 HPVIRTLYDHVDEVNDLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTL  240 (430)
T ss_pred             CceEeehhhccCcccceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCce
Confidence            467899999999999999999 78899999999999999998754443333  245789999999999999999999999


Q ss_pred             EEEcCCCCceEEEEe---cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-C-CCCeEEEEEcCCCCEE
Q 022910          132 QIWDPSSGNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-H-GSSVTCGDFTPDGKTI  206 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~l  206 (290)
                      ++||+++.++.....   .|.+.|+++.+++.+++.++++.||.|++||--+++++.++.. | +..|.+..|..+++++
T Consensus       241 rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi  320 (430)
T KOG0640|consen  241 RLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI  320 (430)
T ss_pred             eEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence            999999988765443   4788999999999999999999999999999989998888753 3 4578999999999999


Q ss_pred             EEEeCCCeEEEEcCCCCeeeEEEeCCCC--cccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEEc-cCCCcEE
Q 022910          207 CTGSDDATLRVWNPKSGENIHVIRGHPY--HTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVVSSLV-SHTDSIE  282 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~-~~~~~v~  282 (290)
                      ++++.|..+++|.+.+++.+..+.+...  ...--+...|+....|++.-.. .+.+.-||.+++..+..+. +|++.++
T Consensus       321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R  400 (430)
T KOG0640|consen  321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVR  400 (430)
T ss_pred             eecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCce
Confidence            9999999999999999999988876421  1122345567777777766544 5689999999987766654 7999999


Q ss_pred             EEEEecCC
Q 022910          283 CIGFSRSE  290 (290)
Q Consensus       283 ~i~~s~d~  290 (290)
                      .|.-||.+
T Consensus       401 ~i~HSP~~  408 (430)
T KOG0640|consen  401 WIVHSPVE  408 (430)
T ss_pred             EEEeCCCC
Confidence            99999864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.9e-28  Score=187.59  Aligned_cols=232  Identities=22%  Similarity=0.443  Sum_probs=201.0

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc------C-----------------------------
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN------Q-----------------------------   96 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~------~-----------------------------   96 (290)
                      ....++..+.||.+.|++++|++ .+.++++++.|++-.||...      .                             
T Consensus       178 Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s  256 (481)
T KOG0300|consen  178 ESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS  256 (481)
T ss_pred             ccccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence            35788999999999999999999 88899999999999999731      1                             


Q ss_pred             -----CeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCC
Q 022910           97 -----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS  171 (290)
Q Consensus        97 -----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg  171 (290)
                           ..++..+.+|.+.|.+..|...++.+++++.|.+..+||++++.++..+.+|....+.++-+|..+++++++.|.
T Consensus       257 D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDt  336 (481)
T KOG0300|consen  257 DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDT  336 (481)
T ss_pred             CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCc
Confidence                 014456788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCC
Q 022910          172 TVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADST  249 (290)
Q Consensus       172 ~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~  249 (290)
                      +.++||++.. ..+..|++|...|+++.|..+ ..+++|+.|.+|++||+++.. ++.++.    ..++++.++.+..+.
T Consensus       337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g~~  411 (481)
T KOG0300|consen  337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKGHP  411 (481)
T ss_pred             eeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee----cCCccceeEeecCCc
Confidence            9999999854 567889999999999999865 468999999999999999765 355666    578899999998888


Q ss_pred             EEEEEeCCCcEEEEEcCCCcEE----EEEccCCCcEEEEEEecC
Q 022910          250 LALSGSKDGSVHMVNITTGKVV----SSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       250 ~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~v~~i~~s~d  289 (290)
                      +++.--.+..|++||++..++.    ..-++|..-|+|.+|..+
T Consensus       412 iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee  455 (481)
T KOG0300|consen  412 IIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE  455 (481)
T ss_pred             eEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence            9999988999999999644322    233578889999999753

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4.3e-28  Score=185.53  Aligned_cols=234  Identities=19%  Similarity=0.295  Sum_probs=184.2

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-----------------------------------
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----------------------------------   98 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------------------------------   98 (290)
                      +-.+..|+||.+.|++++|+. +++.|||++.|++|++|++..-.                                   
T Consensus        76 pl~~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g  154 (420)
T KOG2096|consen   76 PLNVSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG  154 (420)
T ss_pred             chhhhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence            445667899999999999999 88999999999999999985310                                   


Q ss_pred             -eeeee-----------------------ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEE
Q 022910           99 -WASEI-----------------------QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW  154 (290)
Q Consensus        99 -~~~~~-----------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  154 (290)
                       .+..+                       ..|+-.|..+-...++.+|++++.|..|.+|++. |+.+..+.......+.
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~  233 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD  233 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence             00000                       1234455556666677899999999999999998 8888888877777888


Q ss_pred             EEEcCCCCEEEEeeCCCeEEEEECC---cc-----cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC---
Q 022910          155 VSWHPRGHIVLAGSEDSTVWMWNAD---RA-----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG---  223 (290)
Q Consensus       155 i~~~~~~~~l~~~~~dg~i~i~d~~---~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---  223 (290)
                      .+.+|+|+++++++..-.|++|.+-   .+     ..+..+++|.+.|..++|+|+...+++.+.||.+++||..-.   
T Consensus       234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence            9999999999999999999999853   22     235577899999999999999999999999999999997521   


Q ss_pred             -eeeEEEeCC----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cCCCcEEEEEEecCC
Q 022910          224 -ENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSRSE  290 (290)
Q Consensus       224 -~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~s~d~  290 (290)
                       +-.+.++..    ....+....+.++|.|+.|+.+. ...+++|..++|+..-.+. .|...|++|+|+++|
T Consensus       314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g  385 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDG  385 (420)
T ss_pred             CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCC
Confidence             111222111    11233445899999999998765 4589999999998887776 589999999999986

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1e-28  Score=189.10  Aligned_cols=227  Identities=24%  Similarity=0.438  Sum_probs=194.7

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      .++.|.||++.|..++-.. ...++.+++.|.+.+||.+++++++..+.+|.+.|.+++|++.+.++++++.|++-.||.
T Consensus       140 lvre~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             ehhhhcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            4566789999999999887 677999999999999999999999999999999999999999999999999999999996


Q ss_pred             C------CC----------------------------------CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEE
Q 022910          136 P------SS----------------------------------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM  175 (290)
Q Consensus       136 ~------~~----------------------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i  175 (290)
                      .      ..                                  ..++..+.+|.+.|.+..|-..+..+++++.|.+..+
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl  298 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL  298 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence            2      10                                  0234567889999999999999999999999999999


Q ss_pred             EECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe
Q 022910          176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS  255 (290)
Q Consensus       176 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (290)
                      ||++++.++..+.+|...++.++-+|..+++++++.|.+.++||++.  .+..+....+|...|+++.|..+. .+++|+
T Consensus       299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd-~vVSgS  375 (481)
T KOG0300|consen  299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDD-RVVSGS  375 (481)
T ss_pred             eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCC-ceeecC
Confidence            99999999999999999999999999999999999999999999983  333433344489999999998754 678999


Q ss_pred             CCCcEEEEEcCCCc-EEEEEccCCCcEEEEEEe
Q 022910          256 KDGSVHMVNITTGK-VVSSLVSHTDSIECIGFS  287 (290)
Q Consensus       256 ~dg~i~~wd~~~~~-~~~~~~~~~~~v~~i~~s  287 (290)
                      .|.+|++||+++.+ ++.++.. ..+++.++.+
T Consensus       376 DDrTvKvWdLrNMRsplATIRt-dS~~NRvavs  407 (481)
T KOG0300|consen  376 DDRTVKVWDLRNMRSPLATIRT-DSPANRVAVS  407 (481)
T ss_pred             CCceEEEeeeccccCcceeeec-CCccceeEee
Confidence            99999999998864 5566554 3455555544

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=3.3e-28  Score=189.74  Aligned_cols=212  Identities=19%  Similarity=0.327  Sum_probs=171.7

Q ss_pred             CCceeeeccCCcCEEEEEECCC-CCcEEEEecCCCcEEEEEccC----------------CeeeeeeccccCCEEEEEEC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQ----------------GDWASEIQGHKDSVSSLAFS  116 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~----------------~~~~~~~~~~~~~i~~~~~~  116 (290)
                      +.......+|.+.|+.+.-.+. +..+.|+-+..|.|.||++..                .+++.++.+|...=+.++||
T Consensus       141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS  220 (440)
T KOG0302|consen  141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS  220 (440)
T ss_pred             ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc
Confidence            3444555678888888887775 345677778899999999853                34677788999999999999


Q ss_pred             CCC-CEEEEEeCCCcEEEEcCCCCceE---EEEecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCccc---EEEeee
Q 022910          117 MDG-QLLASGGLDGLVQIWDPSSGNLK---CTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAA---YLNMFS  188 (290)
Q Consensus       117 ~~~-~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~---~~~~~~  188 (290)
                      |-. ..|++|..-+.|++|...++...   ..+.+|...|-.++|+|. ...|++|+.||.|+|||+|.+.   ++.+ +
T Consensus       221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k  299 (440)
T KOG0302|consen  221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K  299 (440)
T ss_pred             cccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e
Confidence            933 25888888899999999887543   345679999999999996 4589999999999999999883   3333 7


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 022910          189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       189 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~  266 (290)
                      .|.+.|..|.|+....+|++|+.||+++|||+|+.+.-..+.....|..+|+++.|+| +...|++++.|.+|.+||+.
T Consensus       300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            8999999999999888999999999999999997554333333334999999999999 56788899999999999985

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.8e-29  Score=193.70  Aligned_cols=208  Identities=25%  Similarity=0.373  Sum_probs=184.9

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      ..+..-.|--|..+|.|+.|+. +...+|+|+.||.|++|.+.+|.++.++. .|...|+|+.|+.++..+++++.|.++
T Consensus       252 kYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tv  330 (508)
T KOG0275|consen  252 KYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTV  330 (508)
T ss_pred             hhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceE
Confidence            3444455666889999999999 88899999999999999999999999987 899999999999999999999999999


Q ss_pred             EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec----------------------
Q 022910          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG----------------------  189 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------  189 (290)
                      +|.-+.+|+++..+++|.+.|+...|.++|.++++++.||+|++|+..+..++.+++.                      
T Consensus       331 RiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV  410 (508)
T KOG0275|consen  331 RIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV  410 (508)
T ss_pred             EEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE
Confidence            9999999999999999999999999999999999999999999999887655433321                      


Q ss_pred             -------------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEE
Q 022910          190 -------------------------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI  244 (290)
Q Consensus       190 -------------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  244 (290)
                                               ..+...+.+++|.|.++++.+.|+.++.|...+|+...++..   |...+..++-
T Consensus       411 CNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V---hEkdvIGl~H  487 (508)
T KOG0275|consen  411 CNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV---HEKDVIGLTH  487 (508)
T ss_pred             EcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec---cccccccccc
Confidence                                     123344567899999999999999999999999998888877   7788899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEE
Q 022910          245 SADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       245 ~~~~~~l~~~~~dg~i~~wd  264 (290)
                      +|..+.||+-+.||.+++|.
T Consensus       488 HPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  488 HPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CcccchhhhhcccchhhhcC
Confidence            99999999999999999994

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5e-29  Score=193.41  Aligned_cols=228  Identities=15%  Similarity=0.252  Sum_probs=198.9

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      ....+..|.||.+.|.|++=+|..-..+++|+.||.|+|||+.+..+...+..|.+.|..|++..  ..+++++.|.+|+
T Consensus        55 akPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK  132 (433)
T KOG0268|consen   55 AKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK  132 (433)
T ss_pred             hccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCccee
Confidence            45678888999999999999995558899999999999999999999999999999999999976  6788999999999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC-CEEEEEeC
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSD  211 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~  211 (290)
                      .|-+.. .++.++.+. +.+..+.-+..+..++|++.  .|.|||.+...+++.+......|.++.|+|.. ..|+++..
T Consensus       133 ~wk~~~-~p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s  208 (433)
T KOG0268|consen  133 QWKIDG-PPLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS  208 (433)
T ss_pred             eeeccC-Ccceeeecc-ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence            999875 466666543 44777887777888998875  69999999999999999888899999999955 56677779


Q ss_pred             CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEEccCCCcEEEEEEecCC
Q 022910          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      |+.|.+||++++.+++.+.    ....-+.++|+|.+-.+++|+.|..++.||++.. .++....+|.+.|.++.|||-|
T Consensus       209 DrsIvLyD~R~~~Pl~KVi----~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG  284 (433)
T KOG0268|consen  209 DRSIVLYDLRQASPLKKVI----LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG  284 (433)
T ss_pred             CCceEEEecccCCccceee----eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc
Confidence            9999999999999988776    4566788999998888999999999999999874 5788889999999999999976

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=2e-27  Score=180.08  Aligned_cols=213  Identities=20%  Similarity=0.371  Sum_probs=178.2

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe----------eeee-----eccccCCEEEEEECC-CC
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----------WASE-----IQGHKDSVSSLAFSM-DG  119 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~-----~~~~~~~i~~~~~~~-~~  119 (290)
                      .....+.|.+.|+++...+..++++++|+.||.|.+||++...          .+..     -.+|.-.|..+.|.| +.
T Consensus        35 d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   35 DKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             CcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence            3445567999999999999999999999999999999997632          1111     135788999999999 55


Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCC---CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEE
Q 022910          120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR---GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC  196 (290)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  196 (290)
                      ..|.+++.|.+++|||.++.+....|+- .+.|..-+|+|-   ..++|+|..+-.|++.|+.++.....+.+|...|.+
T Consensus       115 GmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  115 GMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA  193 (397)
T ss_pred             ceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence            5888999999999999999998888874 456888899883   458889999999999999999999999999999999


Q ss_pred             EEEcCCCCE-EEEEeCCCeEEEEcCCCC-eeeEEE-----------eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 022910          197 GDFTPDGKT-ICTGSDDATLRVWNPKSG-ENIHVI-----------RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV  263 (290)
Q Consensus       197 ~~~~~~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w  263 (290)
                      +.|+|...+ |++|+.||.|++||++.- .+...+           +....|.+.++.++|+.++.++++++.|..+++|
T Consensus       194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w  273 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW  273 (397)
T ss_pred             EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence            999997665 578999999999999854 233333           2233477889999999999999999999999999


Q ss_pred             EcCCCc
Q 022910          264 NITTGK  269 (290)
Q Consensus       264 d~~~~~  269 (290)
                      +..+|+
T Consensus       274 n~~~G~  279 (397)
T KOG4283|consen  274 NMESGR  279 (397)
T ss_pred             ecccCc
Confidence            987764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.9e-28  Score=202.93  Aligned_cols=209  Identities=25%  Similarity=0.438  Sum_probs=190.1

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC--eeeeeeccccCCEEEEEE-CCCCCEEEEEeCCCcEE
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAF-SMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~  132 (290)
                      .+..+..|.+-|..++... .++.|++++.|-+|++|+...+  -+...+..|...|.|++. .++...+|+|+.|+.|.
T Consensus        65 ~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If  143 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF  143 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence            4888999999999999887 6667889999999999999887  567788899999999999 78888999999999999


Q ss_pred             EEcCCCCc--eEE--------EEe-cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC
Q 022910          133 IWDPSSGN--LKC--------TLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP  201 (290)
Q Consensus       133 i~d~~~~~--~~~--------~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  201 (290)
                      +||++++.  .+.        .+. ++..+|++++.++.|..|++|+..+.|++||.++.+.+..+.+|...|.++..++
T Consensus       144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d  223 (735)
T KOG0308|consen  144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND  223 (735)
T ss_pred             EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC
Confidence            99999772  222        222 6777899999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910          202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                      +|+.+++++.||+|++||+...+++.++..   |...|+++..+|+-..+++|+.||.|+.=|+++.
T Consensus       224 DGt~~ls~sSDgtIrlWdLgqQrCl~T~~v---H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  224 DGTRLLSASSDGTIRLWDLGQQRCLATYIV---HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             CCCeEeecCCCceEEeeeccccceeeeEEe---ccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            999999999999999999999999999887   7788999999999999999999999999999884

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.1e-27  Score=196.85  Aligned_cols=209  Identities=26%  Similarity=0.451  Sum_probs=186.5

Q ss_pred             CCCceeeecc-CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee-eccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910           53 PDDSTHIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (290)
Q Consensus        53 ~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (290)
                      ..+.++.+.+ |...|-+++|+.   ..+.+|+.++.|..+|+...+.... +.+|...|..++|++++.++|+|+.|+.
T Consensus       248 ~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~  324 (484)
T KOG0305|consen  248 EQKKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNV  324 (484)
T ss_pred             hccccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccc
Confidence            3556677777 999999999984   6888999999999999998766555 8899999999999999999999999999


Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEee--CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  207 (290)
                      +.|||.....+...+..|.+.|.+++|+| ...+||+|+  .|++|++||..+++.+..+. ..+.|..|.|++..+-|+
T Consensus       325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~  403 (484)
T KOG0305|consen  325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELL  403 (484)
T ss_pred             eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEE
Confidence            99999988899999999999999999999 566888865  59999999999999888876 568899999999887776


Q ss_pred             E--EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910          208 T--GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       208 ~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                      +  |..+..|.||+..+.+++..+.+   |...|..++++|+|..+++|+.|.++++|++-..
T Consensus       404 sthG~s~n~i~lw~~ps~~~~~~l~g---H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  404 STHGYSENQITLWKYPSMKLVAELLG---HTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EecCCCCCcEEEEeccccceeeeecC---CcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            5  45577899999999888888887   8889999999999999999999999999998764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.7e-28  Score=179.37  Aligned_cols=230  Identities=22%  Similarity=0.322  Sum_probs=187.1

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC---eeeeeeccccCCEEEEEECC--CCCEEEEEeCCCcE
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLV  131 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i  131 (290)
                      ...-..|.+.|..+...- .+..|||++.|++|+|+.+...   +++..+.+|.+||..++|..  .|..||+++.||.|
T Consensus         4 q~idt~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV   82 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV   82 (299)
T ss_pred             eehhhhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence            345578999999988877 7889999999999999999864   56788999999999999965  78999999999999


Q ss_pred             EEEcCCCCce--EEEEecCCCCEEEEEEcCC--CCEEEEeeCCCeEEEEECCcc---cEEEeeecCCCCeEEEEEcCC--
Q 022910          132 QIWDPSSGNL--KCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPD--  202 (290)
Q Consensus       132 ~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~--  202 (290)
                      .||.-..++-  ...+..|...+++++|.|.  |-.|++++.||.|.|.+.+..   ...+....|.-.|++++|.|.  
T Consensus        83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~  162 (299)
T KOG1332|consen   83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA  162 (299)
T ss_pred             EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence            9999887743  3456679999999999985  569999999999999998765   234556679999999999995  


Q ss_pred             -C-----------CEEEEEeCCCeEEEEcCCCCe--eeEEEeCCCCcccCeEEEEEcCCC----CEEEEEeCCCcEEEEE
Q 022910          203 -G-----------KTICTGSDDATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADS----TLALSGSKDGSVHMVN  264 (290)
Q Consensus       203 -~-----------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~~wd  264 (290)
                       |           +.|++|+.|..|+||+..+++  .-.++.+   |...|+.++|.|.-    .+||+++.||++.||-
T Consensus       163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~---H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG---HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh---cchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence             4           569999999999999998762  1223444   89999999999943    5899999999999998


Q ss_pred             cCCCc---EEEEEccCCCcEEEEEEecCC
Q 022910          265 ITTGK---VVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       265 ~~~~~---~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .....   ....+......++.++||+.|
T Consensus       240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sG  268 (299)
T KOG1332|consen  240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSG  268 (299)
T ss_pred             ecCccCcccccccccCCcceEEEEEeccc
Confidence            76321   122233355789999999875

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.2e-27  Score=187.79  Aligned_cols=226  Identities=26%  Similarity=0.417  Sum_probs=195.0

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee----ee---e-----------ccccCCEEEEEECCC
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA----SE---I-----------QGHKDSVSSLAFSMD  118 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----~~---~-----------~~~~~~i~~~~~~~~  118 (290)
                      ...+..|.-+|.|++++| +..+.++++.+|+|.-|++.+++..    .+   +           +.|...+.+++.+++
T Consensus       135 ~~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD  213 (479)
T ss_pred             ceeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence            678889999999999999 6778889999999999999877632    11   0           267888999999999


Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEE
Q 022910          119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD  198 (290)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  198 (290)
                      ++||++|+.|..|.||+..+.+.++.+++|.+.|.+++|-.....|++++.|+.|++|++.....+.++.+|+..|..|.
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            99999999999999999999999999999999999999998888999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cC
Q 022910          199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SH  277 (290)
Q Consensus       199 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~  277 (290)
                      ....++.+-+|+.|+++++|++.... ...+.+   +.+.+.|++|-.+ ..+++|+.+|.|.+|++-+.+++.+.. +|
T Consensus       294 aL~reR~vtVGgrDrT~rlwKi~ees-qlifrg---~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AH  368 (479)
T KOG0299|consen  294 ALSRERCVTVGGRDRTVRLWKIPEES-QLIFRG---GEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAH  368 (479)
T ss_pred             hhcccceEEeccccceeEEEeccccc-eeeeeC---CCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccc
Confidence            98888888889999999999995433 234444   6778999999854 578899999999999999999888765 23


Q ss_pred             C-----------CcEEEEEEec
Q 022910          278 T-----------DSIECIGFSR  288 (290)
Q Consensus       278 ~-----------~~v~~i~~s~  288 (290)
                      .           .+|++++..|
T Consensus       369 gv~~~~~~~~~~~Witsla~i~  390 (479)
T KOG0299|consen  369 GVIPELDPVNGNFWITSLAVIP  390 (479)
T ss_pred             cccCCccccccccceeeeEecc
Confidence            1           1677777655

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.5e-27  Score=181.10  Aligned_cols=232  Identities=15%  Similarity=0.246  Sum_probs=185.1

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      .|.+...++....  ..|+.|++ .|.+||+|+.+|.|.|||+.+......+.+|..+|++++|+++|++|+++|.|..|
T Consensus        13 ~PEel~~tld~~~--a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si   89 (405)
T KOG1273|consen   13 YPEELTHTLDNPL--AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI   89 (405)
T ss_pred             ChHhhceeccCCc--cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence            3444555555433  78999999 88999999999999999999999888899999999999999999999999999999


Q ss_pred             EEEcCCCCceEEEEecCCCCEE-----------------------------------------------EEEEcCCCCEE
Q 022910          132 QIWDPSSGNLKCTLEGPGGGVE-----------------------------------------------WVSWHPRGHIV  164 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~-----------------------------------------------~i~~~~~~~~l  164 (290)
                      .+||+..|.+++.+.- .++|+                                               +..|.+.|+++
T Consensus        90 ~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yI  168 (405)
T KOG1273|consen   90 KLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYI  168 (405)
T ss_pred             EEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEE
Confidence            9999998877665421 11111                                               22355667899


Q ss_pred             EEeeCCCeEEEEECCcccEEEeeecCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee------e---EEEeCCCC
Q 022910          165 LAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN------I---HVIRGHPY  234 (290)
Q Consensus       165 ~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~---~~~~~~~~  234 (290)
                      ++|...|.+.+|+..+.+++..++... ..|..+.++..|++|++.+.|..||.|+++.--.      +   +.++.. .
T Consensus       169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-V  247 (405)
T KOG1273|consen  169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-V  247 (405)
T ss_pred             EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-H
Confidence            999999999999999999998887665 7899999999999999999999999999862110      0   111100 0


Q ss_pred             cccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEEccCC-CcEEEEEEec
Q 022910          235 HTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVVSSLVSHT-DSIECIGFSR  288 (290)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~-~~v~~i~~s~  288 (290)
                      ....-.+++|+.+|.|+++|+. -..+++|....|.+++.+.+.. .....+.|+|
T Consensus       248 Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp  303 (405)
T KOG1273|consen  248 NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP  303 (405)
T ss_pred             hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc
Confidence            2345678899999999988875 3579999999999999999877 4566777776

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4.7e-29  Score=208.73  Aligned_cols=201  Identities=25%  Similarity=0.434  Sum_probs=187.4

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ..++..|.+|..+|.++.|++ ...+|++|+.+|+|++||+...+.++++.+|...+..+.|+|-+.|++.|+.|+.+++
T Consensus        60 p~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~i  138 (825)
T KOG0267|consen   60 PNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKI  138 (825)
T ss_pred             CchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccccee
Confidence            344556999999999999999 8899999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  213 (290)
                      ||++...+...+.+|...+.++.|+|+|++++.|+.|..++|||+..++.+..|..|...+.++.|+|..-+++.|+.|+
T Consensus       139 wD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~  218 (825)
T KOG0267|consen  139 WDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR  218 (825)
T ss_pred             hhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998999999999


Q ss_pred             eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 022910          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG  258 (290)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  258 (290)
                      +|++||+++...+.....   ....|.+.+|+|++..+++|....
T Consensus       219 tv~f~dletfe~I~s~~~---~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  219 TVRFWDLETFEVISSGKP---ETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeeeeccceeEEeeccCC---ccCCceeeeecCCceeeecCchhh
Confidence            999999998877666655   577899999999999999886653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.6e-27  Score=174.96  Aligned_cols=215  Identities=25%  Similarity=0.345  Sum_probs=175.2

Q ss_pred             CCCCceeeeccCCcCEEEEEEC-CCCCcEEEEecCCCcEEEEEccCCeee--eeeccccCCEEEEEECCC--CCEEEEEe
Q 022910           52 QPDDSTHIFSGHSDEVYSVACS-PTDATLVATGGGDDKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMD--GQLLASGG  126 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~i~~~~~~~~--~~~l~~~~  126 (290)
                      .+...+..|+||+++|..++|. |.-+.+||+++.||.|.||.-.+++..  .....|...|++++|.|.  |-.|++++
T Consensus        44 ~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas  123 (299)
T KOG1332|consen   44 GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS  123 (299)
T ss_pred             CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEee
Confidence            3457899999999999999985 667889999999999999999887543  345679999999999985  45899999


Q ss_pred             CCCcEEEEcCCCC---ceEEEEecCCCCEEEEEEcCC---C-----------CEEEEeeCCCeEEEEECCccc--EEEee
Q 022910          127 LDGLVQIWDPSSG---NLKCTLEGPGGGVEWVSWHPR---G-----------HIVLAGSEDSTVWMWNADRAA--YLNMF  187 (290)
Q Consensus       127 ~dg~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~--~~~~~  187 (290)
                      .||.|.|++.+..   ........|.-.+++++|.|-   |           +.|++|+.|..|+||+.....  .-+++
T Consensus       124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l  203 (299)
T KOG1332|consen  124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL  203 (299)
T ss_pred             CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh
Confidence            9999999998765   122345678888999999985   4           579999999999999998763  33558


Q ss_pred             ecCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 022910          188 SGHGSSVTCGDFTPDG----KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV  263 (290)
Q Consensus       188 ~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w  263 (290)
                      .+|...|+.++|.|.-    .+|++++.||+|.||-.+.................+..+.|++.|++|++++.|+.|.+|
T Consensus       204 ~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  204 EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW  283 (299)
T ss_pred             hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence            8999999999999943    579999999999999776332222222222256789999999999999999999999999


Q ss_pred             EcC
Q 022910          264 NIT  266 (290)
Q Consensus       264 d~~  266 (290)
                      .-.
T Consensus       284 ke~  286 (299)
T KOG1332|consen  284 KEN  286 (299)
T ss_pred             EeC
Confidence            754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1.9e-27  Score=192.30  Aligned_cols=201  Identities=26%  Similarity=0.346  Sum_probs=164.4

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee-eee-----ccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-SEI-----QGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (290)
                      +||...++|.+|+|.....|+|++.||++|||++...+.. ..+     .+..-+++.++|++++++||+|+.||+|.+|
T Consensus       265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W  344 (641)
T KOG0772|consen  265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW  344 (641)
T ss_pred             CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence            3699999999999988899999999999999999875422 222     2334578999999999999999999999999


Q ss_pred             cCCCCce---EEEEecCCC--CEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-EEEeeecC--CCCeEEEEEcCCCCEE
Q 022910          135 DPSSGNL---KCTLEGPGG--GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGH--GSSVTCGDFTPDGKTI  206 (290)
Q Consensus       135 d~~~~~~---~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~l  206 (290)
                      +......   ...-..|..  .|+||.|+++|++|++-+.|+++++||+++.+ ++....+.  ..+-+.++|||+.++|
T Consensus       345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli  424 (641)
T KOG0772|consen  345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLI  424 (641)
T ss_pred             ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEE
Confidence            9754422   122345655  89999999999999999999999999999864 45444432  2345778999999999


Q ss_pred             EEEeC------CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910          207 CTGSD------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       207 ~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  264 (290)
                      ++|+.      .|.+.+||..+...++.+..   ....|..+.|+|.-+.|++|+.||.+++|=
T Consensus       425 ~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i---~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  425 LTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI---STASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             EecccccCCCCCceEEEEeccceeeEEEecC---CCceEEEEeecchhhheeeecCCCceEEEE
Confidence            99853      57899999999998888876   467789999999888899999999999874

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.4e-26  Score=196.32  Aligned_cols=220  Identities=20%  Similarity=0.316  Sum_probs=192.2

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (290)
                      +...|.+++...   ..|++|+.+++|.+|.+..++.-..+....-++++++|+.+|+++|.||.|-.|++.++.+....
T Consensus        55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~  131 (933)
T KOG1274|consen   55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE  131 (933)
T ss_pred             cCceeEEEeecc---cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh
Confidence            788899988764   47889999999999999998877777777889999999999999999999999999999999999


Q ss_pred             EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec--------CCCCeEEEEEcCCCCEEEEEeCCCe
Q 022910          143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--------HGSSVTCGDFTPDGKTICTGSDDAT  214 (290)
Q Consensus       143 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~  214 (290)
                      ..+++|.++|.++.|+|++++||+.+.||.|++|++..+.+...+.+        ....+..++|+|++..|++.+.|+.
T Consensus       132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~  211 (933)
T KOG1274|consen  132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT  211 (933)
T ss_pred             eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence            99999999999999999999999999999999999999876665543        1456788999999888988899999


Q ss_pred             EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      |++|+..+......+.... +...++.++|+|+|.|||+++.+|.|.|||+.+...    ......|.+++|.|++
T Consensus       212 Vkvy~r~~we~~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  212 VKVYSRKGWELQFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNA  282 (933)
T ss_pred             EEEEccCCceeheeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCC
Confidence            9999999999888887654 445599999999999999999999999999987222    2234689999998864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-25  Score=179.92  Aligned_cols=223  Identities=17%  Similarity=0.252  Sum_probs=187.8

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--CeeeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCCCCc
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGN  140 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  140 (290)
                      .+.|+++.|+| ...++++++.||+++||.+..  ...+..+.-...+|.+..|.|+|. .+++++....++.||+.+.+
T Consensus       213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             cCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            57899999999 888899999999999999864  344555655678999999999999 89999999999999999887


Q ss_pred             eEEEE--ecC-CCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 022910          141 LKCTL--EGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV  217 (290)
Q Consensus       141 ~~~~~--~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  217 (290)
                      ....-  .++ ...+.....+|++++|++.+..|.|.+....+++.+..++ ..+.|..++|+.+++.|++++.+|.|.+
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            54332  222 2357778889999999999999999999999999998887 5678999999999999999999999999


Q ss_pred             EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CcEEEEEccCCCcEEEEEEecCC
Q 022910          218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT------GKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~------~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ||++...+++.+...  ..-.-++++.++++.|||+|+..|.|.|||.++      .+++..+..-...|++++|+||.
T Consensus       371 ~nl~~~~~~~rf~D~--G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~  447 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDD--GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA  447 (514)
T ss_pred             EecCCcceEEEEeec--CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence            999999888887642  122346677788999999999999999999653      56778777777899999999974

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.5e-25  Score=171.37  Aligned_cols=207  Identities=22%  Similarity=0.348  Sum_probs=173.8

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      .++.++.|.||...|..|+.+| ....+++++.|++|++||++..++...+.....  ..++|.|.|-++|++.....|+
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~Ik  165 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIK  165 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEE
Confidence            5788999999999999999999 668888999999999999998777776654433  3578999999999998888999


Q ss_pred             EEcCCCC--ceEEEEec---CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCe---EEEEEcCCCC
Q 022910          133 IWDPSSG--NLKCTLEG---PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV---TCGDFTPDGK  204 (290)
Q Consensus       133 i~d~~~~--~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i---~~~~~~~~~~  204 (290)
                      +||++..  .+-.++..   .....+.|.|+|+|++|+.++..+.+++.|.-+|..+..+..+...-   -..+|+|+++
T Consensus       166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~  245 (311)
T KOG1446|consen  166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK  245 (311)
T ss_pred             EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence            9999864  33444433   35678999999999999999999999999999999888887654432   5678999999


Q ss_pred             EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      ++++|+.||+|.+|+++++..+..+.+.  +..++.++.|+|.-.++++++  ..+.+|=..
T Consensus       246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~--~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~  303 (311)
T KOG1446|consen  246 FVLSGSDDGTIHVWNLETGKKVAVLRGP--NGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD  303 (311)
T ss_pred             EEEEecCCCcEEEEEcCCCcEeeEecCC--CCCCccccccCCceeeeeecC--ceEEEEecc
Confidence            9999999999999999999999998875  678899999999876776664  467777543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=1.2e-27  Score=188.49  Aligned_cols=235  Identities=21%  Similarity=0.338  Sum_probs=207.8

Q ss_pred             CCCCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCCCCEEEEE
Q 022910           48 ENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASG  125 (290)
Q Consensus        48 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~  125 (290)
                      -....|......+..|.+.|..+.|-+ +...|++|+.|..|++|++...+  .+.++.+..++|+.+.|.+++++++++
T Consensus       159 v~~~lpS~~~~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa  237 (459)
T KOG0288|consen  159 VEDTLPSRALFVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAA  237 (459)
T ss_pred             hhcccchhhhhhhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEee
Confidence            345678888999999999999999999 77789999999999999998766  677788888999999999999999999


Q ss_pred             eCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE
Q 022910          126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  205 (290)
                      +.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|+.||+.+..+.+++. ..+.+..|..+  +..
T Consensus       238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~  314 (459)
T KOG0288|consen  238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISD  314 (459)
T ss_pred             cCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--cee
Confidence            999999999999999999999999999999998877779999999999999999988887765 34556666665  557


Q ss_pred             EEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC----CCcE
Q 022910          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH----TDSI  281 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~v  281 (290)
                      +++|..|+.|++||.++..+...+..    .+.|+++..++++..|++++.|.++.+.|+++......+.+.    ....
T Consensus       315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~----gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw  390 (459)
T KOG0288|consen  315 VISGHFDKKVRFWDIRSADKTRSVPL----GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW  390 (459)
T ss_pred             eeecccccceEEEeccCCceeeEeec----CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence            88999999999999999999888874    458999999999999999999999999999999888877642    2358


Q ss_pred             EEEEEecCC
Q 022910          282 ECIGFSRSE  290 (290)
Q Consensus       282 ~~i~~s~d~  290 (290)
                      +.+.|||++
T Consensus       391 trvvfSpd~  399 (459)
T KOG0288|consen  391 TRVVFSPDG  399 (459)
T ss_pred             ceeEECCCC
Confidence            899999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.95  E-value=1.6e-26  Score=186.33  Aligned_cols=219  Identities=16%  Similarity=0.280  Sum_probs=188.7

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (290)
                      .-.|++... ...++++|+..+.|+|||++...+.+.+++|+..|+++.++-...|||+++..|.|.|..+.++.....|
T Consensus        81 ~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f  159 (673)
T KOG4378|consen   81 NAFCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF  159 (673)
T ss_pred             hHHHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence            334555554 3468889999999999999977777888999999999999999999999999999999999999888888


Q ss_pred             ecC-CCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEee-ecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCC
Q 022910          146 EGP-GGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMF-SGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPK  221 (290)
Q Consensus       146 ~~~-~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~  221 (290)
                      ... ...++-+.|+|..+ +|.+++.+|.|.+||+....++..+ ..|..+...|+|+| +..+|++.+.|..|.+||.+
T Consensus       160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            755 44677999999766 6677899999999999887766554 46999999999999 56778899999999999999


Q ss_pred             CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcEEEEEccCCCcEEEEEEecC
Q 022910          222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      .......+.    ...+.+.++|+++|.+|++|+..|.|..||++. ..++..+.+|...|++|+|-|.
T Consensus       240 s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  240 SQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             cccccceee----ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            877766666    567899999999999999999999999999986 4578899999999999999764

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=6.5e-26  Score=189.22  Aligned_cols=226  Identities=25%  Similarity=0.411  Sum_probs=197.1

Q ss_pred             CCCCceeeeccCCcCEEE-EEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910           52 QPDDSTHIFSGHSDEVYS-VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (290)
                      ........+.+|.+-|.+ ++|-+.++-.+++|+.|..|.+|.+.+..+...+++|++.|.|+....++. +++||.|.+
T Consensus        45 ~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T  123 (745)
T KOG0301|consen   45 KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST  123 (745)
T ss_pred             cccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccc
Confidence            344555678888888887 888875666788999999999999999999999999999999999887777 999999999


Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      +++|..  +++...+.+|..+|++++.-|.+ .+++|+.|.+|++|.-  ++.++++.+|...|+.+++.|++ .|++++
T Consensus       124 akvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScs  197 (745)
T KOG0301|consen  124 AKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCS  197 (745)
T ss_pred             eEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeec
Confidence            999975  55666799999999999999987 8999999999999975  78899999999999999999864 588999


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .||.|++|++ ++..+..+.+   |..-+.++...+++..+++++.|+++++|+..  .+.+.+.-....|+++.+-++|
T Consensus       198 NDg~Ir~w~~-~ge~l~~~~g---htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng  271 (745)
T KOG0301|consen  198 NDGSIRLWDL-DGEVLLEMHG---HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG  271 (745)
T ss_pred             CCceEEEEec-cCceeeeeec---cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC
Confidence            9999999999 7788777777   88889999988888899999999999999975  7778777666788888776554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=1.1e-25  Score=188.00  Aligned_cols=201  Identities=23%  Similarity=0.390  Sum_probs=176.0

Q ss_pred             CCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (290)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (290)
                      .....|..+|+||+..|.|++... .+. +++|+.|.++++|...  ++...+++|+..|+++++.|.+ .+++||.|.+
T Consensus        88 ~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKt  162 (745)
T KOG0301|consen   88 LSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKT  162 (745)
T ss_pred             cCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcce
Confidence            346789999999999999999776 444 7899999999999764  5566699999999999999988 8999999999


Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      |++|.-  ++.+.+|.+|...|+.+++-+++ .|++++.||.|++|++ ++..+..+.+|...++++...+++..+++++
T Consensus       163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g  238 (745)
T KOG0301|consen  163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG  238 (745)
T ss_pred             eeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence            999975  78889999999999999998754 6899999999999999 7889999999999999999888889999999


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      .|++++||+..  .+.+.+..   ....++++.+-++|. +++|++||.||||...
T Consensus       239 EDrtlriW~~~--e~~q~I~l---PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  239 EDRTLRIWKKD--ECVQVITL---PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             CCceEEEeecC--ceEEEEec---CccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            99999999976  66666663   344788888888776 5678899999999875

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=5.3e-26  Score=190.68  Aligned_cols=230  Identities=18%  Similarity=0.341  Sum_probs=200.7

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC---CCCEEEEEeCCCcEEEEc
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM---DGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d  135 (290)
                      ..-+....+.+++.+| +++.||+|..-|.++||++...+....+..|...|.|+.|+.   ..++||+++.|..|+|||
T Consensus       454 s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D  532 (1080)
T KOG1408|consen  454 STCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD  532 (1080)
T ss_pred             hhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence            3344567899999999 888999999999999999999999999999999999999984   356899999999999999


Q ss_pred             CCCC-ceEEEEecCCCCEEEEEEcCCC--CEEEEeeCCCeEEEEECCcccEEEeee-----cCCCCeEEEEEcCCCCEEE
Q 022910          136 PSSG-NLKCTLEGPGGGVEWVSWHPRG--HIVLAGSEDSTVWMWNADRAAYLNMFS-----GHGSSVTCGDFTPDGKTIC  207 (290)
Q Consensus       136 ~~~~-~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~  207 (290)
                      +... .+++++.+|...|+++.|...|  ..+++++.|..|.+--.++......+.     .....++.|+..|..++++
T Consensus       533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~  612 (1080)
T KOG1408|consen  533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV  612 (1080)
T ss_pred             cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence            9654 5678889999999999998877  689999998877654333221122222     1345789999999999999


Q ss_pred             EEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEe
Q 022910          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS  287 (290)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s  287 (290)
                      +++.|..|+||++.+++..+.+++...|.+....+...|.|.||++.+.|.++.++|..+|+++.++.+|...|+++.|.
T Consensus       613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~  692 (1080)
T KOG1408|consen  613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL  692 (1080)
T ss_pred             EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 022910          288 RS  289 (290)
Q Consensus       288 ~d  289 (290)
                      +|
T Consensus       693 nD  694 (1080)
T KOG1408|consen  693 ND  694 (1080)
T ss_pred             cc
Confidence            87

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=5.6e-26  Score=183.54  Aligned_cols=222  Identities=20%  Similarity=0.369  Sum_probs=187.6

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---eeeeec--cccCCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (290)
                      .|..-|.++.++. ..+.++||+. |-|+|||+....   .+..+.  ....-|+++...|+|+.|++|+.-.+|.|||+
T Consensus       417 ~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            4777888888887 6778889885 889999997642   233333  23567999999999999999999999999999


Q ss_pred             CCCceEE--EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 022910          137 SSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (290)
Q Consensus       137 ~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  214 (290)
                      ....+..  .+....-...+++.+|+.+..+++..||.|.|||++....++.+++|...+.||.++++|..|.+|+-|.+
T Consensus       495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence            8765432  33333345778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ||.||++.++.+....    ..+.|.++..+|.+.+|++|-.++.+.|.... +..-..+..|...|.++.|++.|
T Consensus       575 vRcWDlregrqlqqhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cG  645 (705)
T KOG0639|consen  575 VRCWDLREGRQLQQHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCG  645 (705)
T ss_pred             eeehhhhhhhhhhhhh----hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccC
Confidence            9999999988765554    57889999999999999999999999998864 44556677789999999999865

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2e-26  Score=194.39  Aligned_cols=212  Identities=21%  Similarity=0.333  Sum_probs=177.6

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC-CCCEEEEEeCCCcE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLV  131 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i  131 (290)
                      ..+.+..|..|...|+++.|++..+++|++|+.||.|++||++..+...++.+....|+.++|+| .+.+|+++...|.|
T Consensus       122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~l  201 (839)
T KOG0269|consen  122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYL  201 (839)
T ss_pred             cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceE
Confidence            45667789999999999999999999999999999999999999988888888889999999998 46689999999999


Q ss_pred             EEEcCCCC-ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE--EeeecCCCCeEEEEEcCCCCE-EE
Q 022910          132 QIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGKT-IC  207 (290)
Q Consensus       132 ~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~-l~  207 (290)
                      ++||++.. ++...+.+|.++|.|+.|+|++.+||+|+.|+.|+||+..+.+..  .++. ...+|.+++|-|...+ |+
T Consensus       202 qlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLA  280 (839)
T KOG0269|consen  202 QLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLA  280 (839)
T ss_pred             EEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhh
Confidence            99999865 456678899999999999999999999999999999999866433  3333 4578999999996655 55


Q ss_pred             EEe--CCCeEEEEcCCCCeee-EEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 022910          208 TGS--DDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       208 ~~~--~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                      +++  .|-.|+|||++..... .++..   |...++.++|.. +...|.+++.||+|..-.++++
T Consensus       281 tcsmv~dtsV~VWDvrRPYIP~~t~~e---H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  281 TCSMVVDTSVHVWDVRRPYIPYATFLE---HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             hhhccccceEEEEeeccccccceeeec---cCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            554  3778999999865543 33333   888999999976 6678999999998876665544

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=2.4e-25  Score=173.88  Aligned_cols=209  Identities=22%  Similarity=0.433  Sum_probs=168.8

Q ss_pred             CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee---eeccccCCEEEEEECCCC-CEEEEE
Q 022910           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGHKDSVSSLAFSMDG-QLLASG  125 (290)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~i~~~~~~~~~-~~l~~~  125 (290)
                      ......++.++.+|.+.=++|+|+|.....|++|..-+.|++|...++....   .+.+|+..|-.++|+|.. ..|++|
T Consensus       197 ~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc  276 (440)
T KOG0302|consen  197 KDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC  276 (440)
T ss_pred             cccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEee
Confidence            3356789999999999999999999655567888888999999999876543   356799999999999965 489999


Q ss_pred             eCCCcEEEEcCCCCc--eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc---cEEEeeecCCCCeEEEEEc
Q 022910          126 GLDGLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFT  200 (290)
Q Consensus       126 ~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~  200 (290)
                      |.||+|+|||++.+.  .....+.|.+.|+.|.|+..-.+||+|+.+|+++|||+|+.   +++..++.|..+|++|.|+
T Consensus       277 S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~  356 (440)
T KOG0302|consen  277 SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH  356 (440)
T ss_pred             ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence            999999999999872  22344789999999999998889999999999999999864   6788999999999999999


Q ss_pred             C-CCCEEEEEeCCCeEEEEcCCCCee----------------eEEEeCCCCcccCeEEEEEcCC-CCEEEEEeCCCc
Q 022910          201 P-DGKTICTGSDDATLRVWNPKSGEN----------------IHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGS  259 (290)
Q Consensus       201 ~-~~~~l~~~~~dg~i~i~d~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~  259 (290)
                      | ....|++++.|.+|.+||+..-.-                .+.+..|. ....+.-+.|++. ..+|++.+.||.
T Consensus       357 p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  357 PHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             cccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccce
Confidence            9 456788899999999999853211                11122211 3445778899984 457777778874

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=5.9e-25  Score=187.00  Aligned_cols=178  Identities=18%  Similarity=0.299  Sum_probs=162.2

Q ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE---ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE
Q 022910          108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL  184 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  184 (290)
                      ..+++++.++.|++.+.|+..|.|-+|++.+|-....+   ..|.++|+.++...-++.+++++.+|.+++||+.+...+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            46788888899999999999999999999999888888   579999999999988999999999999999999988877


Q ss_pred             EeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910          185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       185 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  264 (290)
                      ..+. ....+.++.++.....++++..|-.|+++|..+.+.++.+.+   |...|+.++|||||++|++++.|++|++||
T Consensus       529 ~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g---h~nritd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  529 KSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG---HGNRITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             eeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc---cccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence            7776 566788899998888999999999999999999988888888   899999999999999999999999999999


Q ss_pred             cCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          265 ITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       265 ~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +.++.++-.+.. ..+.+++.|||+|
T Consensus       605 lpt~~lID~~~v-d~~~~sls~SPng  629 (910)
T KOG1539|consen  605 LPTGTLIDGLLV-DSPCTSLSFSPNG  629 (910)
T ss_pred             ccCcceeeeEec-CCcceeeEECCCC
Confidence            999999998875 6799999999986

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1e-24  Score=187.33  Aligned_cols=227  Identities=19%  Similarity=0.247  Sum_probs=196.3

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      -+|+..-+.|+|.| ++..|++++.||.|++|+.... .....+..+...|.+++.  .+.+|++|+.+++|.+|.+..+
T Consensus        10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence            47899999999999 7779999999999999998776 444455547778888877  5569999999999999999988


Q ss_pred             ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910          140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (290)
Q Consensus       140 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  219 (290)
                      ..-..+....-++++++|+.+|+++|.|+.|-.|++.++......+.+.+|..+|.++.|+|.+.+||+.+.||.|++|+
T Consensus        87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence            77666666667899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeEEEeCCCCc-----ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc--CCCcEEEEEEecCC
Q 022910          220 PKSGENIHVIRGHPYH-----TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--HTDSIECIGFSRSE  290 (290)
Q Consensus       220 ~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~i~~s~d~  290 (290)
                      +.++....++.+....     ...++.++|+|++..|++.+.|+.|++|+..++.....+..  +...+..++|+|.|
T Consensus       167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG  244 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG  244 (933)
T ss_pred             cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence            9998877766544322     34567899999988888888999999999999998888764  34459999999987

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2e-24  Score=179.96  Aligned_cols=234  Identities=23%  Similarity=0.379  Sum_probs=192.8

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee-eeecc-ccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-SEIQG-HKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      -...+.+.--..+|.++||+. ..+.||.+-.+|.|.||++..+-.. ..+.+ ....|-+++|++ +..|++.+.+|.|
T Consensus        15 vhrcrf~d~~Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i   92 (691)
T KOG2048|consen   15 VHRCRFVDYKPSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSI   92 (691)
T ss_pred             EEEEEEEeeeccceEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceE
Confidence            334455566678999999999 6667999999999999999875332 33433 456899999994 5567888889999


Q ss_pred             EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE--EeeecCCCCeEEEEEcCCCCEEEEE
Q 022910          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGKTICTG  209 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~  209 (290)
                      .-||+.++++...+....+.|++++.+|.+..+++|+.||.++.++...++..  +.+....+.|.+++|+|++..+++|
T Consensus        93 ~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~G  172 (691)
T KOG2048|consen   93 TEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGG  172 (691)
T ss_pred             EEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEec
Confidence            99999999999999999999999999999999999999998888888777644  3444566899999999999999999


Q ss_pred             eCCCeEEEEcCCCCeeeEEE-----eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEE
Q 022910          210 SDDATLRVWNPKSGENIHVI-----RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI  284 (290)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i  284 (290)
                      +.||.|++||..++..+...     ........-|+++.|-.+ ..|++|.+-|+|.+||...+.++.++..|.+.|.++
T Consensus       173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~L  251 (691)
T KOG2048|consen  173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLAL  251 (691)
T ss_pred             ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEE
Confidence            99999999999998876622     111112344777777754 478899999999999999999999999999999999


Q ss_pred             EEecCC
Q 022910          285 GFSRSE  290 (290)
Q Consensus       285 ~~s~d~  290 (290)
                      +-.+++
T Consensus       252 av~~~~  257 (691)
T KOG2048|consen  252 AVADNE  257 (691)
T ss_pred             EEcCCC
Confidence            988763

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=1e-25  Score=179.87  Aligned_cols=232  Identities=16%  Similarity=0.189  Sum_probs=181.5

Q ss_pred             ceeeeccCCcCEEEEEECCCCC-cEEEEecCCCcEEEEEccCC----eeeeeeccccCCEEEEEECCCC-CEEEEEeCCC
Q 022910           56 STHIFSGHSDEVYSVACSPTDA-TLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDG  129 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg  129 (290)
                      .....+-|.++|++++|+|... +++|+|..-|+|-+||+.+.    .-+..+..|..+|.+|.|+|.+ ..+++.|.||
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            4456677899999999999766 79999999999999999532    2344567899999999999955 5899999999


Q ss_pred             cEEEEcCCCCceEEEEec--CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE-EEeeecCCCCeEEEEEcC-CCCE
Q 022910          130 LVQIWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTP-DGKT  205 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~  205 (290)
                      +|++-|++.+.....+..  ....+..+.|+.....++++..=|.+.+||+++... ...+..|...|.+|+++| ...+
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~  337 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF  337 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence            999999988754333333  455678888998888888888888999999998765 566677888999999999 5567


Q ss_pred             EEEEeCCCeEEEEcCCCCeeeEE--EeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC----CCcEEEEEccCCC
Q 022910          206 ICTGSDDATLRVWNPKSGENIHV--IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT----TGKVVSSLVSHTD  279 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~----~~~~~~~~~~~~~  279 (290)
                      |++++.|++++|||++.......  +... .|...|.+..|||.+..|+|.+.|..|+|||..    .-.+..++. |+.
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~  415 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN  415 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence            88999999999999987544332  3322 388999999999987779999999999999983    333444443 221


Q ss_pred             ------cEEEEEEecC
Q 022910          280 ------SIECIGFSRS  289 (290)
Q Consensus       280 ------~v~~i~~s~d  289 (290)
                            ......|.|+
T Consensus       416 ~t~RwlT~fKA~W~P~  431 (498)
T KOG4328|consen  416 RTGRWLTPFKAAWDPD  431 (498)
T ss_pred             cccccccchhheeCCC
Confidence                  3445567765

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.3e-25  Score=166.95  Aligned_cols=205  Identities=20%  Similarity=0.328  Sum_probs=169.5

Q ss_pred             EEEEecCCCcEEEEEccCC------------eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe
Q 022910           79 LVATGGGDDKGFFWRINQG------------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE  146 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  146 (290)
                      .|++|+....|.-+++...            .++..+..|.++|++++.  ++.++|+|+.|-+|+|||+.+...+..+-
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence            3566776666666655321            235567789999999999  78999999999999999999999999999


Q ss_pred             cCCCCEEEEEEcCCCC--EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe
Q 022910          147 GPGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE  224 (290)
Q Consensus       147 ~~~~~i~~i~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  224 (290)
                      .|.+.|+++.|.+...  +|++|+.||.|.+|+.....++..+++|...|+.++.+|.+++.++.+.|+.++.|++..|+
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            9999999999998765  99999999999999999999999999999999999999999999999999999999998776


Q ss_pred             eeEEEeCCCC------------------------------------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910          225 NIHVIRGHPY------------------------------------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       225 ~~~~~~~~~~------------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                      .-..+.....                                    ....+.++.|. ++..|++|+.++.|++||..+.
T Consensus       161 ~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~  239 (362)
T KOG0294|consen  161 VAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD  239 (362)
T ss_pred             cceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC
Confidence            5333321100                                    11123344443 5667889999999999999999


Q ss_pred             cEEEEEccCCCcEEEEEE
Q 022910          269 KVVSSLVSHTDSIECIGF  286 (290)
Q Consensus       269 ~~~~~~~~~~~~v~~i~~  286 (290)
                      .+...+.+|.+.|-++.+
T Consensus       240 ~~~~~~~AH~~RVK~i~~  257 (362)
T KOG0294|consen  240 TPLTEFLAHENRVKDIAS  257 (362)
T ss_pred             ccceeeecchhheeeeEE
Confidence            999999999999998874

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.3e-24  Score=162.87  Aligned_cols=229  Identities=21%  Similarity=0.329  Sum_probs=177.5

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----eeeeeeccccCCEEEEEECC--CCCEEEEEeCCCcEE
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ  132 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~  132 (290)
                      .-.+|.+-|+++.|.+ .|+.+|+|+.|++|+|||....    .+....+.|.+.|..+.|.+  -|+.+|+++.|+++.
T Consensus         8 i~s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             cccCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            3468999999999999 8899999999999999997543    35556778999999999964  588999999999999


Q ss_pred             EEcCCCC---------ceEEEEecCCCCEEEEEEcCC--CCEEEEeeCCCeEEEEECCcccE------EEeee-------
Q 022910          133 IWDPSSG---------NLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAY------LNMFS-------  188 (290)
Q Consensus       133 i~d~~~~---------~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~------~~~~~-------  188 (290)
                      ||.-...         ....++....+.|+.+.|.|.  |-.||+++.||.++||+.-....      ...++       
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            9975211         223455666778999999994  67999999999999998654322      22222       


Q ss_pred             cCCCCeEEEEEcC---CCCEEEEEeCC-----CeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCC----CCEEEEEe
Q 022910          189 GHGSSVTCGDFTP---DGKTICTGSDD-----ATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISAD----STLALSGS  255 (290)
Q Consensus       189 ~~~~~i~~~~~~~---~~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~  255 (290)
                      .+..+..|+.|+|   ...+|++|+.+     +.++||....+. +...+.....|..+|+.++|.|+    -.+||+++
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence            3566788999998   35678888766     478888765443 44444444558999999999994    35899999


Q ss_pred             CCCcEEEEEcCCC--------------------cEEEEEccCCCcEEEEEEecC
Q 022910          256 KDGSVHMVNITTG--------------------KVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       256 ~dg~i~~wd~~~~--------------------~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      .|| |+||.++..                    +.+..+..|++.|+.+.|+--
T Consensus       247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt  299 (361)
T KOG2445|consen  247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT  299 (361)
T ss_pred             cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence            999 999998731                    245667789999999999743

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.8e-26  Score=179.32  Aligned_cols=209  Identities=21%  Similarity=0.362  Sum_probs=171.9

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCc
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN  140 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~  140 (290)
                      +|++.|.+|+|+..-.++||+|+.|.+|++||+.++++..++..|...|.++.|+|. ..+|++|+.|++|.+.|.+...
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~  320 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS  320 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence            799999999999988899999999999999999999999999999999999999985 5589999999999999998532


Q ss_pred             eE-EEEecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEE
Q 022910          141 LK-CTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLR  216 (290)
Q Consensus       141 ~~-~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~  216 (290)
                      .. ..++ ..+.|-.++|.|.. ..+++++.||+++-+|+|+. +++.+++.|..+|.+|++++ ...++++++.++.|+
T Consensus       321 ~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk  399 (463)
T KOG0270|consen  321 NSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK  399 (463)
T ss_pred             ccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence            22 2333 44569999999864 47888889999999999986 89999999999999999998 456788999999999


Q ss_pred             EEcCCCCeeeEEEeCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEE
Q 022910          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVS  272 (290)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~  272 (290)
                      +|++...... ....+...-+...|+++.|+- -+|+.|+..+.+++||+.+...++
T Consensus       400 lw~~~~~~~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  400 LWKFDVDSPK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             EEeecCCCCc-ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            9998755442 222222233446777888854 467778888889999998876554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=2.4e-23  Score=170.07  Aligned_cols=225  Identities=14%  Similarity=0.093  Sum_probs=171.3

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC-cEEEE
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-LVQIW  134 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~  134 (290)
                      ....+..+.. +..++|+|++..++++++.++.+++||+.+.+.+..+.. ...+.+++|+|+++++++++.++ .+.+|
T Consensus        65 ~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~  142 (300)
T TIGR03866        65 VIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFI  142 (300)
T ss_pred             EEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEE
Confidence            3344444433 567899995555556667789999999998877776653 34468899999999999888765 46778


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe-eCCCeEEEEECCcccEEEeeecCC-------CCeEEEEEcCCCCEE
Q 022910          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNADRAAYLNMFSGHG-------SSVTCGDFTPDGKTI  206 (290)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l  206 (290)
                      +..+++....+... ..+.+++|+|++.+|+++ ..++.|++||+++++.+..+..+.       .....++|+|+++++
T Consensus       143 d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~  221 (300)
T TIGR03866       143 DTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA  221 (300)
T ss_pred             eCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence            99888776555433 346789999999988655 468999999999988776654221       123568899999986


Q ss_pred             EE-EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEEccCCCcEEEE
Q 022910          207 CT-GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLVSHTDSIECI  284 (290)
Q Consensus       207 ~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i  284 (290)
                      ++ .+.++.|.+||+++++....+.    +...+.+++|+|++++|+++ +.+|.|++||+.+++++..++.. ...++|
T Consensus       222 ~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~  296 (300)
T TIGR03866       222 FVALGPANRVAVVDAKTYEVLDYLL----VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGV  296 (300)
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEE----eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccccee
Confidence            55 4556789999999887765554    34568899999999999886 45899999999999999999864 566999


Q ss_pred             EEec
Q 022910          285 GFSR  288 (290)
Q Consensus       285 ~~s~  288 (290)
                      +|+|
T Consensus       297 ~~~~  300 (300)
T TIGR03866       297 VVRP  300 (300)
T ss_pred             EeCC
Confidence            9986

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.1e-24  Score=173.32  Aligned_cols=197  Identities=22%  Similarity=0.374  Sum_probs=160.9

Q ss_pred             EEEEECCC------CCcEEEEecCCCcEEEEEccCCe---------------------eeeeeccccCCEEEEEECCCC-
Q 022910           68 YSVACSPT------DATLVATGGGDDKGFFWRINQGD---------------------WASEIQGHKDSVSSLAFSMDG-  119 (290)
Q Consensus        68 ~~~~~~~~------~~~~l~~~~~dg~i~iw~~~~~~---------------------~~~~~~~~~~~i~~~~~~~~~-  119 (290)
                      .|++|...      .++++|.|+.+..|.|||+.-..                     .-....+|+..|..++|+..- 
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            56677532      35799999999999999985210                     001123688888899998754 


Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEE
Q 022910          120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD  198 (290)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  198 (290)
                      +.||+||.|.+|++||+.++++..++..|...|.++.|+|. ..+|++|+.|+++.+.|+|........-...+.|-.++
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~  336 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA  336 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence            47999999999999999999999999999999999999995 56899999999999999996433332223567899999


Q ss_pred             EcC-CCCEEEEEeCCCeEEEEcCCCC-eeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 022910          199 FTP-DGKTICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       199 ~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      |.| ....++++..||+|+-+|+|+. +++.+++.   |..+|.++++++ ...+|++++.|+.|++|++..
T Consensus       337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A---Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA---HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             ecCCCceeEEEecCCceEEeeecCCCCCceeEEEe---ccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence            999 4567788999999999999976 77888887   889999999998 456899999999999999864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=4.6e-23  Score=168.41  Aligned_cols=232  Identities=17%  Similarity=0.177  Sum_probs=174.4

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQ  132 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~  132 (290)
                      .+.+..+.+|. .+.+++|+|++..++++++.++.|++|++.+++....+..+.. +..+.|+|+++.++++ +.++.|+
T Consensus        21 ~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~   98 (300)
T TIGR03866        21 LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVT   98 (300)
T ss_pred             CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEE
Confidence            34566666654 4678999995545557788899999999999888777765443 5678999999977655 5689999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCC-eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-e
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS-TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-S  210 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~  210 (290)
                      +||+.+.+.+..+... ..+.+++|+|++.+++++..++ .+.+||.++++....+.. ...+.+++|+|++++|+++ .
T Consensus        99 ~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866        99 VIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence            9999998877776533 3468899999999999988765 577889988876655432 3456789999999988655 4


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCC--C--cccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910          211 DDATLRVWNPKSGENIHVIRGHP--Y--HTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLVSHTDSIECIG  285 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~  285 (290)
                      .++.|++||+.+++.+..+....  .  .......++|+|++++++++ +.++.|.+||+.+++.+..+. +...+.+++
T Consensus       177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~  255 (300)
T TIGR03866       177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLA  255 (300)
T ss_pred             CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEE
Confidence            68999999999988766554211  0  11124568899999986554 456789999999998877664 345799999


Q ss_pred             EecCC
Q 022910          286 FSRSE  290 (290)
Q Consensus       286 ~s~d~  290 (290)
                      |+|+|
T Consensus       256 ~~~~g  260 (300)
T TIGR03866       256 FTPDE  260 (300)
T ss_pred             ECCCC
Confidence            99986

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.5e-24  Score=173.59  Aligned_cols=208  Identities=22%  Similarity=0.362  Sum_probs=179.5

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEc
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH  158 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  158 (290)
                      ++++-.....+.+|.+...........-.++|.+++-+|.|.+|+.|+..|.|++|.+.+|.++..+..|..+|+|+.|+
T Consensus        53 llsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs  132 (476)
T KOG0646|consen   53 LLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS  132 (476)
T ss_pred             eeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe
Confidence            34343445678999987765554444456889999999999999999899999999999999999999999999999999


Q ss_pred             CCCCEEEEeeCCCeEEEEECC---------cccEEEeeecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEcCCCCeeeE
Q 022910          159 PRGHIVLAGSEDSTVWMWNAD---------RAAYLNMFSGHGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGENIH  227 (290)
Q Consensus       159 ~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~  227 (290)
                      -++.+|++|+.||.|.+|.+.         +.+++..+..|.-+|+.+...+.  ..+|++++.|.++++||+..+..+.
T Consensus       133 ~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl  212 (476)
T KOG0646|consen  133 DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL  212 (476)
T ss_pred             CCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence            999999999999999999874         24678889999999999998875  3689999999999999999999888


Q ss_pred             EEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----------------cEEEEEccCCC--cEEEEEEecC
Q 022910          228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG----------------KVVSSLVSHTD--SIECIGFSRS  289 (290)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----------------~~~~~~~~~~~--~v~~i~~s~d  289 (290)
                      .+.    ....+.+++.+|.++.+++|+.+|.|.+.++...                ..+..+.+|.+  .|+|++.+-|
T Consensus       213 ti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D  288 (476)
T KOG0646|consen  213 TIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD  288 (476)
T ss_pred             EEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC
Confidence            887    5788999999999999999999999999887432                35677889988  9999999987


Q ss_pred             C
Q 022910          290 E  290 (290)
Q Consensus       290 ~  290 (290)
                      |
T Consensus       289 g  289 (476)
T KOG0646|consen  289 G  289 (476)
T ss_pred             c
Confidence            6

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=8e-25  Score=180.17  Aligned_cols=235  Identities=18%  Similarity=0.284  Sum_probs=182.9

Q ss_pred             CCCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC--------
Q 022910           49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--------  120 (290)
Q Consensus        49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------  120 (290)
                      -.+.|..+...++||++.|.||...| .+..|++|+.||+|+||.+.+++++..+. ..+.|.|++|+|.+.        
T Consensus       385 LrPFPt~~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~  462 (733)
T KOG0650|consen  385 LRPFPTRCALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV  462 (733)
T ss_pred             cCCCcceeeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe
Confidence            35567888999999999999999999 89999999999999999999999888775 445666666666544        


Q ss_pred             ------------------------------------------------------------------------EEEEEeC-
Q 022910          121 ------------------------------------------------------------------------LLASGGL-  127 (290)
Q Consensus       121 ------------------------------------------------------------------------~l~~~~~-  127 (290)
                                                                                              ||++... 
T Consensus       463 ~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~  542 (733)
T KOG0650|consen  463 GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD  542 (733)
T ss_pred             cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC
Confidence                                                                                    2222211 


Q ss_pred             --CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE
Q 022910          128 --DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       128 --dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  205 (290)
                        ...|.|+++...+...-|+...+.+.++.|+|...+|++++. ..|+|||+..+..++.+......|..++.+|.|.-
T Consensus       543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn  621 (733)
T KOG0650|consen  543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN  621 (733)
T ss_pred             CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe
Confidence              112222232222222223334567899999999999999887 78999999998888888878889999999999999


Q ss_pred             EEEEeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------C--cEEEEEc
Q 022910          206 ICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-------G--KVVSSLV  275 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-------~--~~~~~~~  275 (290)
                      |++|+.|+.+..||+.-.. +.+++..   |...+++++|++.-.++++|+.||++.|+.-.-       .  -++..+.
T Consensus       622 li~gs~d~k~~WfDldlsskPyk~lr~---H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~  698 (733)
T KOG0650|consen  622 LILGSYDKKMCWFDLDLSSKPYKTLRL---HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR  698 (733)
T ss_pred             EEEecCCCeeEEEEcccCcchhHHhhh---hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence            9999999999999997554 3344443   889999999999999999999999999986431       1  2567788


Q ss_pred             cCCCc----EEEEEEecC
Q 022910          276 SHTDS----IECIGFSRS  289 (290)
Q Consensus       276 ~~~~~----v~~i~~s~d  289 (290)
                      +|...    |....|||.
T Consensus       699 gH~~~~~~gVLd~~wHP~  716 (733)
T KOG0650|consen  699 GHEKTNDLGVLDTIWHPR  716 (733)
T ss_pred             CceeecccceEeecccCC
Confidence            88654    999999985

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=8.8e-25  Score=181.03  Aligned_cols=232  Identities=17%  Similarity=0.248  Sum_probs=179.4

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee--eccccCCEEEEEECCCCC-EEEEEeCCCcEE
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQ  132 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~  132 (290)
                      .++.+..|.+.|..+.|-| +..+|++++.|.++++||+++.+++..  +.+|.+.|.+++|.|... .|++|+.||.|.
T Consensus        92 ~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il  170 (720)
T KOG0321|consen   92 QLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL  170 (720)
T ss_pred             hhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEE
Confidence            3567788999999999999 999999999999999999999988776  889999999999999655 799999999999


Q ss_pred             EEcCCCCc--------------------e-------EEEEecCCCCEEE---EEEcCCCCEEEEeeC-CCeEEEEECCcc
Q 022910          133 IWDPSSGN--------------------L-------KCTLEGPGGGVEW---VSWHPRGHIVLAGSE-DSTVWMWNADRA  181 (290)
Q Consensus       133 i~d~~~~~--------------------~-------~~~~~~~~~~i~~---i~~~~~~~~l~~~~~-dg~i~i~d~~~~  181 (290)
                      |||++-..                    +       +...+.+...|.+   +.+..|...||+++. |+.|++||+++.
T Consensus       171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~  250 (720)
T KOG0321|consen  171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN  250 (720)
T ss_pred             EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence            99986321                    0       1112233444555   555668888998887 999999999986


Q ss_pred             cEEEee--------ecC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee--eEEEeCCCCcccCeEEEEEcCCC
Q 022910          182 AYLNMF--------SGH---GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADS  248 (290)
Q Consensus       182 ~~~~~~--------~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~  248 (290)
                      ......        ..+   ...+.++.....|.+|++.+.|+.|++|++.+...  +..+.+.... ..-..-..+|++
T Consensus       251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~-sf~vks~lSpd~  329 (720)
T KOG0321|consen  251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS-SFYVKSELSPDD  329 (720)
T ss_pred             ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccc-eeeeeeecCCCC
Confidence            543222        122   34577888888899999999999999999986532  3333332211 122233568999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCc-EEEEEccCCCcEEEEEEecC
Q 022910          249 TLALSGSKDGSVHMVNITTGK-VVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       249 ~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~i~~s~d  289 (290)
                      .+|++|+.|...++|.+.+.. ....+.+|.-.|++++|.|.
T Consensus       330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  330 CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence            999999999999999998765 45667799999999999885

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.93  E-value=3.3e-24  Score=168.50  Aligned_cols=214  Identities=22%  Similarity=0.380  Sum_probs=175.9

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-------eeeeeeccccCCEEEEEECCCC-CEEEEEe
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDG-QLLASGG  126 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~  126 (290)
                      ...-.+.||+++|..++|+|.+...||+|+.|.+|.||.+..+       +.+..+.+|...|.-++|+|.. +.|++++
T Consensus        72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            3455678999999999999999999999999999999999764       3566788999999999999964 5789999


Q ss_pred             CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCC-CeEEEEEcCCCCE
Q 022910          127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCGDFTPDGKT  205 (290)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~  205 (290)
                      .|.+|.+|++.+++.+.++. |...|.++.|+.+|.+|++++.|..|+|||.++++.+..-.+|.+ ....+.|..++.+
T Consensus       152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i  230 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI  230 (472)
T ss_pred             CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce
Confidence            99999999999999888888 999999999999999999999999999999999999988776654 3455567778885


Q ss_pred             EEEEe---CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCcE
Q 022910          206 ICTGS---DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSVHMVNITTGKV  270 (290)
Q Consensus       206 l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~  270 (290)
                      +.+|.   .+.++-+||..+......+.... ..++|----|.++.++++. |-.|+.||.|.+....+
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            55553   47789999988765543333222 4566777778888776655 55699999999987663

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.9e-25  Score=172.64  Aligned_cols=213  Identities=23%  Similarity=0.362  Sum_probs=172.6

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC------------------------------------
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------------------------------   96 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------------------------------   96 (290)
                      ...+...+..|.+.|..|++..   ..+++++.|.+|+.|.+..                                    
T Consensus        98 qR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~  174 (433)
T KOG0268|consen   98 QRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDE  174 (433)
T ss_pred             hhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeeccc
Confidence            4667899999999999999986   4566888889888887432                                    


Q ss_pred             --CeeeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeE
Q 022910           97 --GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV  173 (290)
Q Consensus        97 --~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i  173 (290)
                        ..++..+.-....|.++.|+|... .|++|+.|+.|.+||++++.+++.+.. ...-+.|+|+|.+-.|++|+.|..+
T Consensus       175 ~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nl  253 (433)
T KOG0268|consen  175 QRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNL  253 (433)
T ss_pred             ccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccc
Confidence              112223333345678888888655 677777999999999999998876653 3346789999988899999999999


Q ss_pred             EEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEE
Q 022910          174 WMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL  252 (290)
Q Consensus       174 ~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (290)
                      +.||++.. .++....+|.+.|..++|+|.|+-|++|+.|.+|+||..+.+.....+...  ....|.++.|+-|.+|++
T Consensus       254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~  331 (433)
T KOG0268|consen  254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYII  331 (433)
T ss_pred             eehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEE
Confidence            99999875 577888899999999999999999999999999999999887664444322  456799999999999999


Q ss_pred             EEeCCCcEEEEEcCCCcEE
Q 022910          253 SGSKDGSVHMVNITTGKVV  271 (290)
Q Consensus       253 ~~~~dg~i~~wd~~~~~~~  271 (290)
                      +|+.|+.|++|..+..+.+
T Consensus       332 SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  332 SGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             ecCCCcceeeeecchhhhc
Confidence            9999999999997655433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=4e-25  Score=178.67  Aligned_cols=219  Identities=18%  Similarity=0.269  Sum_probs=187.6

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee--eeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (290)
                      ..-|.++.+.| +++-|++|+.-.++.|||+......  ..+....-...+++.+||.+..+++..||.|.|||+.+...
T Consensus       465 dnyiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~  543 (705)
T KOG0639|consen  465 DNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL  543 (705)
T ss_pred             ccceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence            45688889999 7777789999999999999875443  33443345678899999999999999999999999999999


Q ss_pred             EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC
Q 022910          142 KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK  221 (290)
Q Consensus       142 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  221 (290)
                      +..|++|...+.||.++++|..|.+|+-|.+|+.||+++++.+.... ..+.|.++-++|.+.+|++|-..+.+.|....
T Consensus       544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s  622 (705)
T KOG0639|consen  544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS  622 (705)
T ss_pred             eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence            99999999999999999999999999999999999999998766554 56889999999999999999999999888776


Q ss_pred             CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      ..++ ..+..   |.+.|-++.|.+.|+++++.+.|..+..|.+.-|..+...+. ..+|.+...|-|
T Consensus       623 kp~k-yqlhl---heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~d  685 (705)
T KOG0639|consen  623 KPEK-YQLHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFD  685 (705)
T ss_pred             Cccc-eeecc---cccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccC
Confidence            5443 33333   889999999999999999999999999999999988877765 567887777655

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.6e-24  Score=170.66  Aligned_cols=230  Identities=18%  Similarity=0.317  Sum_probs=186.9

Q ss_pred             eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee--eecccc-CCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS--EIQGHK-DSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (290)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (290)
                      +.--..+|.+.+|.|++...+++++....++.||+.+.+...  .+.++. ..+.....+|++++|+..+..|.|.+...
T Consensus       253 ~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha  332 (514)
T KOG2055|consen  253 IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA  332 (514)
T ss_pred             eeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehh
Confidence            333456899999999666689999999999999998876443  333333 45677888999999999999999999999


Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCC-CeEEEEEcCCCCEEEEEeCCCeE
Q 022910          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                      .+++.+..++. .+.|..++|+.+++.|++++.+|.|++||+++..+++++....+ .-++++.++++.+||+|+..|.|
T Consensus       333 kT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiV  411 (514)
T KOG2055|consen  333 KTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIV  411 (514)
T ss_pred             hhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceE
Confidence            99999999984 45699999999999999999999999999999999998874322 33677888999999999999999


Q ss_pred             EEEcCCCC---eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCcEEEEEccCC---CcEEEEEEe
Q 022910          216 RVWNPKSG---ENIHVIRGHPYHTEGLTCLTISADSTLALSGSK--DGSVHMVNITTGKVVSSLVSHT---DSIECIGFS  287 (290)
Q Consensus       216 ~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~---~~v~~i~~s  287 (290)
                      .|||..+.   ...+.+.........|++|+|+|+.++||.++.  ...+++..+.+......++..+   +.|+|++||
T Consensus       412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS  491 (514)
T KOG2055|consen  412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS  491 (514)
T ss_pred             EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence            99996532   222233332236678999999999999988876  5689999999988888887544   478999999


Q ss_pred             cCC
Q 022910          288 RSE  290 (290)
Q Consensus       288 ~d~  290 (290)
                      |.|
T Consensus       492 P~s  494 (514)
T KOG2055|consen  492 PNS  494 (514)
T ss_pred             CCC
Confidence            964

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=6.5e-24  Score=180.70  Aligned_cols=198  Identities=22%  Similarity=0.329  Sum_probs=181.8

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee---ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (290)
                      ...+++++.++ .|++.+.|+..|.|-+|++++|....++   +.|.++|+.++...-++.+++++.+|.+.+|+..+..
T Consensus       448 ~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~  526 (910)
T KOG1539|consen  448 DINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV  526 (910)
T ss_pred             CcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence            36789999999 8888999999999999999999988888   5899999999998888899999999999999999988


Q ss_pred             eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910          141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (290)
Q Consensus       141 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  220 (290)
                      ++..+.. ...+.++.++.....++++..+-.|+++|..+.+.++.+.+|+..|+.++|||+|++|++++.|++|++||+
T Consensus       527 l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  527 LKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             eeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence            8777774 446899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCC
Q 022910          221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-GSVHMVNITT  267 (290)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~~wd~~~  267 (290)
                      .++.++-.+.    ...+.+++.|+|+|.+|||...| .-|++|--++
T Consensus       606 pt~~lID~~~----vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  606 PTGTLIDGLL----VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             cCcceeeeEe----cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            9999988887    57889999999999999999988 6799997544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.7e-24  Score=190.03  Aligned_cols=222  Identities=22%  Similarity=0.366  Sum_probs=180.5

Q ss_pred             cCEEEEEECCCCCc---EEEEecCCCcEEEEEccCC------eeeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEEE
Q 022910           65 DEVYSVACSPTDAT---LVATGGGDDKGFFWRINQG------DWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIW  134 (290)
Q Consensus        65 ~~v~~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~  134 (290)
                      ..-+.|+|.+.+..   +||.|..||.|.+|+...-      ..+.+...|.+.|..+.|++... +||+|+.+|.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            45678999985544   6999999999999998762      24556678999999999999655 99999999999999


Q ss_pred             cCCCCceEEEEe--cCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeeecCCC--CeEEEEEcCCC-CEEEE
Q 022910          135 DPSSGNLKCTLE--GPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS--SVTCGDFTPDG-KTICT  208 (290)
Q Consensus       135 d~~~~~~~~~~~--~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~~l~~  208 (290)
                      |+.+.+.-..+.  .....|.+++|+.. ...|++++.+|.+.|||++..+.+-.+..+..  .+..++|+|+. ..|++
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~  224 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV  224 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence            998765444432  24567999999874 45788899999999999999988877765544  57899999965 45666


Q ss_pred             EeCCC---eEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEE
Q 022910          209 GSDDA---TLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC  283 (290)
Q Consensus       209 ~~~dg---~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~  283 (290)
                      ++.|.   .|.+||+|.-. +++.+.+   |..+|.++.|++ |..+|++++.|++|.+|+.++++.+..+....++++.
T Consensus       225 As~dd~~PviqlWDlR~assP~k~~~~---H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd  301 (1049)
T KOG0307|consen  225 ASGDDSAPVIQLWDLRFASSPLKILEG---HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD  301 (1049)
T ss_pred             ecCCCCCceeEeecccccCCchhhhcc---cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence            66543   69999998644 3344444   899999999999 4589999999999999999999999999998899999


Q ss_pred             EEEecC
Q 022910          284 IGFSRS  289 (290)
Q Consensus       284 i~~s~d  289 (290)
                      +.|+|.
T Consensus       302 v~w~pr  307 (1049)
T KOG0307|consen  302 VQWCPR  307 (1049)
T ss_pred             eeecCC
Confidence            999985

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=2.3e-23  Score=160.04  Aligned_cols=222  Identities=23%  Similarity=0.407  Sum_probs=177.5

Q ss_pred             cCEEEEEEC-------CCCCcEEEEecCCCcEEEEEccCCeeeeeecc--ccC---CEEEEEECCCCCEEEEEeCCCcEE
Q 022910           65 DEVYSVACS-------PTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKD---SVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        65 ~~v~~~~~~-------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~---~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      ..|+..+|-       | +..++|+.+.+.-|++||.-+++....+.+  |..   ...+++|+|+|.+|++|. ...|+
T Consensus       105 ~tvydy~wYs~M~s~qP-~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir  182 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQP-STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR  182 (406)
T ss_pred             CEEEEEEeeeccccCCC-ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence            457777775       4 667999999999999999999998877653  332   457899999999999876 67899


Q ss_pred             EEcC-CCCceEE--EE-----ecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC
Q 022910          133 IWDP-SSGNLKC--TL-----EGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG  203 (290)
Q Consensus       133 i~d~-~~~~~~~--~~-----~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  203 (290)
                      ++|+ +.|.-..  ..     .+..+-|.+++|+|. ...+++|+....+-||.-..+.++..+.+|.+.|+.++|.++|
T Consensus       183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG  262 (406)
T KOG2919|consen  183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG  262 (406)
T ss_pred             EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence            9999 4443221  11     123567899999995 4599999999999999988999999999999999999999999


Q ss_pred             CEEEEEeC-CCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcEEEEEccCCCc
Q 022910          204 KTICTGSD-DATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDS  280 (290)
Q Consensus       204 ~~l~~~~~-dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~  280 (290)
                      +.|++|+. +-.|..||+|... ++..+..+......-.-....|++++|++|+.+|.|++||++. +..+..+..|...
T Consensus       263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~  342 (406)
T KOG2919|consen  263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT  342 (406)
T ss_pred             CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence            99999875 6789999998643 4455555332223333445568999999999999999999998 7778888889999


Q ss_pred             EEEEEEec
Q 022910          281 IECIGFSR  288 (290)
Q Consensus       281 v~~i~~s~  288 (290)
                      |+.++++|
T Consensus       343 vNgvslnP  350 (406)
T KOG2919|consen  343 VNGVSLNP  350 (406)
T ss_pred             ccceecCc
Confidence            99999988

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.92  E-value=6.9e-22  Score=160.06  Aligned_cols=216  Identities=22%  Similarity=0.388  Sum_probs=172.9

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc---
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN---  140 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---  140 (290)
                      ++-|.|++|.+ ++. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+| +|+.|..|..||-.-.+   
T Consensus       246 kk~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~  322 (626)
T KOG2106|consen  246 KKFVLCVTFLE-NGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRE  322 (626)
T ss_pred             ceEEEEEEEcC-CCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEecccccccccc
Confidence            35799999999 554 5599999999999998888888777999999999999888755 59999999999832000   


Q ss_pred             -------------------------------------eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE
Q 022910          141 -------------------------------------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY  183 (290)
Q Consensus       141 -------------------------------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~  183 (290)
                                                           ......+|......++.+|..+.+++++.|+.+++|+  ..++
T Consensus       323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~  400 (626)
T KOG2106|consen  323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL  400 (626)
T ss_pred             ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence                                                 0012345667788999999999999999999999999  3444


Q ss_pred             EEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 022910          184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV  263 (290)
Q Consensus       184 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w  263 (290)
                      ..... ...++.|+.|+|.| .+++|+..|...+.|..+...+. +..   ...++++++|+|+|.+||.|+.|+.|++|
T Consensus       401 ~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~---d~~~ls~v~ysp~G~~lAvgs~d~~iyiy  474 (626)
T KOG2106|consen  401 EWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHT---DNEQLSVVRYSPDGAFLAVGSHDNHIYIY  474 (626)
T ss_pred             eEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEe---cCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence            43332 45788999999999 99999999999999998855443 333   47899999999999999999999999999


Q ss_pred             EcCCC-cEEEEEc-cCCCcEEEEEEecCC
Q 022910          264 NITTG-KVVSSLV-SHTDSIECIGFSRSE  290 (290)
Q Consensus       264 d~~~~-~~~~~~~-~~~~~v~~i~~s~d~  290 (290)
                      .+... ....... .+..+|+.+.||+|+
T Consensus       475 ~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds  503 (626)
T KOG2106|consen  475 RVSANGRKYSRVGKCSGSPITHLDWSSDS  503 (626)
T ss_pred             EECCCCcEEEEeeeecCceeEEeeecCCC
Confidence            98653 3333332 244899999999985

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.92  E-value=4.5e-24  Score=177.17  Aligned_cols=127  Identities=22%  Similarity=0.378  Sum_probs=108.8

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee--e----eeeccccCCEEEEEECCCCCEEEEEeC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--A----SEIQGHKDSVSSLAFSMDGQLLASGGL  127 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~----~~~~~~~~~i~~~~~~~~~~~l~~~~~  127 (290)
                      ...+..+.+|.+.|+.+.|+|....+||+|+.|..|+||.+..+-.  +    ..+.+..-.+-++.|+|...-|+..+.
T Consensus        69 ~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a  148 (1012)
T KOG1445|consen   69 TRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA  148 (1012)
T ss_pred             ccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc
Confidence            4467788999999999999998889999999999999999985421  1    123334457889999997765666666


Q ss_pred             CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc
Q 022910          128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR  180 (290)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~  180 (290)
                      .|+++|||+.+++.+..+.+|...|.++.|+.+|.+|++++.|..|+|||-+.
T Consensus       149 ~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  149 HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            89999999999999999999999999999999999999999999999999764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=7.2e-23  Score=155.83  Aligned_cols=193  Identities=22%  Similarity=0.335  Sum_probs=153.6

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC--EEEEEeCCCcEEEEc
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGLDGLVQIWD  135 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d  135 (290)
                      +....|.++|.+++|+. ++..+++|+.|+.+++||+.+++ +..+..|.++|.++.|-+...  .|++||.|.+|++||
T Consensus        66 ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD  143 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD  143 (347)
T ss_pred             hhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence            55667999999999998 77889999999999999999995 555677999999999977555  899999999999999


Q ss_pred             CCCCceEEEEecC-----------------------------------------CCCEEEEEEcCCCCEEEEeeCCCeEE
Q 022910          136 PSSGNLKCTLEGP-----------------------------------------GGGVEWVSWHPRGHIVLAGSEDSTVW  174 (290)
Q Consensus       136 ~~~~~~~~~~~~~-----------------------------------------~~~i~~i~~~~~~~~l~~~~~dg~i~  174 (290)
                      .+...++.++..+                                         .-.++|++..++....+.|+-.|.+.
T Consensus       144 ~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  144 TRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA  223 (347)
T ss_pred             cCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence            9876655443211                                         12457777777777778888888888


Q ss_pred             EEECCcc--cEEEeeecCC---------CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEE
Q 022910          175 MWNADRA--AYLNMFSGHG---------SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT  243 (290)
Q Consensus       175 i~d~~~~--~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  243 (290)
                      +..+..+  +.-..++.|.         ..|.+|+|+|.-..|++++.||++.+||-....++.....   +..+|++.+
T Consensus       224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~---~~qpItcc~  300 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET---HPQPITCCS  300 (347)
T ss_pred             EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc---CCCccceeE
Confidence            8877765  2223344443         2578899999889999999999999999877666555554   889999999


Q ss_pred             EcCCCCEEEEEe
Q 022910          244 ISADSTLALSGS  255 (290)
Q Consensus       244 ~~~~~~~l~~~~  255 (290)
                      |+.+|.+++-+.
T Consensus       301 fn~~G~ifaYA~  312 (347)
T KOG0647|consen  301 FNRNGSIFAYAL  312 (347)
T ss_pred             ecCCCCEEEEEe
Confidence            999999887653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.2e-23  Score=170.58  Aligned_cols=221  Identities=22%  Similarity=0.377  Sum_probs=185.9

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--------CeeeeeeccccCCEEEEEECCCCCEEEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------GDWASEIQGHKDSVSSLAFSMDGQLLASG  125 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  125 (290)
                      ..+..+++.|.+.|+.++|+| ....|++++.+|++++|+++.        -+++.++.+|.++|.|+++.+++.++++|
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg  362 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG  362 (577)
T ss_pred             cceeeeeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence            455668999999999999999 777888999999999999932        24677889999999999999999999999


Q ss_pred             eCCCcEEEEcCCCC----------ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE--E---------
Q 022910          126 GLDGLVQIWDPSSG----------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--L---------  184 (290)
Q Consensus       126 ~~dg~i~i~d~~~~----------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~---------  184 (290)
                      +.||+|+.|++...          .....+.+|...++.+++|+....|++++.||+++.|......+  .         
T Consensus       363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P  442 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP  442 (577)
T ss_pred             ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCc
Confidence            99999999976522          23456788999999999999999999999999999998754332  0         


Q ss_pred             ---------------------------------Eeee-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe
Q 022910          185 ---------------------------------NMFS-------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE  224 (290)
Q Consensus       185 ---------------------------------~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  224 (290)
                                                       ..+.       .....+..+.++|...+.+++..|+.|+++|..++.
T Consensus       443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence                                             0000       011346677888988999999999999999999999


Q ss_pred             eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910          225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  278 (290)
                      .+.....   |...++++++.|+|.+|++++.|+.+++|.+....++.....|.
T Consensus       523 ~l~s~~a---~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  523 ILHSMVA---HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cchheee---ccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            8887776   78899999999999999999999999999998888877776664

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=7.6e-23  Score=155.41  Aligned_cols=167  Identities=28%  Similarity=0.426  Sum_probs=145.7

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC---CCEEEEEeCCCcEEEE
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD---GQLLASGGLDGLVQIW  134 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~  134 (290)
                      ..-.+|+-.|..+.|-|.+.-+|.+++.|.++++||.++.+....++ ..+.|++-+++|-   ..++|+|..+-.|++.
T Consensus        95 ~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLC  173 (397)
T KOG4283|consen   95 QHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC  173 (397)
T ss_pred             cCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence            34467999999999999988899999999999999999998888877 6678999999884   3478899999999999


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcc-cEEEe--------------eecCCCCeEEEE
Q 022910          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA-AYLNM--------------FSGHGSSVTCGD  198 (290)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~--------------~~~~~~~i~~~~  198 (290)
                      |+.+|...+++.+|...|.++.|+|... .|++|+.||.|++||++.. -+...              -..|.+.+..++
T Consensus       174 Di~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla  253 (397)
T KOG4283|consen  174 DIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA  253 (397)
T ss_pred             eccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence            9999999999999999999999999776 6788999999999999864 22222              235778899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEcCCCCee
Q 022910          199 FTPDGKTICTGSDDATLRVWNPKSGEN  225 (290)
Q Consensus       199 ~~~~~~~l~~~~~dg~i~i~d~~~~~~  225 (290)
                      |..++.++++++.|..+++|+..+|..
T Consensus       254 ~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  254 WTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             ecccchhhhhccCccceEEeecccCcc
Confidence            999999999999999999999987754

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.1e-21  Score=163.73  Aligned_cols=230  Identities=19%  Similarity=0.285  Sum_probs=189.1

Q ss_pred             CCCceeeeccCC-cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           53 PDDSTHIFSGHS-DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        53 ~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      ..-....+.|+. ..|-+++|.+ +++++ +.+.+|.|.-||+.+++.+..+....+.|++++.+|.+..++.|+.||.+
T Consensus        57 ~w~~~~vi~g~~drsIE~L~W~e-~~RLF-S~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl  134 (691)
T KOG2048|consen   57 NWFLEPVIHGPEDRSIESLAWAE-GGRLF-SSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVL  134 (691)
T ss_pred             CceeeEEEecCCCCceeeEEEcc-CCeEE-eecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceE
Confidence            344556666664 5799999997 66555 77789999999999999999999999999999999999999999999988


Q ss_pred             EEEcCCCCceEE--EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee--------cCCCCeEEEEEcC
Q 022910          132 QIWDPSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--------GHGSSVTCGDFTP  201 (290)
Q Consensus       132 ~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~  201 (290)
                      .+++...++...  .+....+.+.++.|+|++..+++|+.||.|++||..++..+....        ....-|+++.|..
T Consensus       135 ~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr  214 (691)
T KOG2048|consen  135 YDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR  214 (691)
T ss_pred             EEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee
Confidence            888888777654  344456889999999999999999999999999999987666221        1233567787774


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE----EEEEccC
Q 022910          202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV----VSSLVSH  277 (290)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~  277 (290)
                      + ..|++|...|+|.+||...+..++.+..   |...|.+++..+++.++++++.|+.|..|...+.+.    ......|
T Consensus       215 d-~tI~sgDS~G~V~FWd~~~gTLiqS~~~---h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h  290 (691)
T KOG2048|consen  215 D-STIASGDSAGTVTFWDSIFGTLIQSHSC---HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH  290 (691)
T ss_pred             c-CcEEEecCCceEEEEcccCcchhhhhhh---hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC
Confidence            4 5799999999999999999988877776   888999999999999999999999999998876643    2233467


Q ss_pred             CCcEEEEEEec
Q 022910          278 TDSIECIGFSR  288 (290)
Q Consensus       278 ~~~v~~i~~s~  288 (290)
                      ...|++++..+
T Consensus       291 ~hdvrs~av~~  301 (691)
T KOG2048|consen  291 AHDVRSMAVIE  301 (691)
T ss_pred             cccceeeeeec
Confidence            77888887654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=9.7e-22  Score=150.14  Aligned_cols=225  Identities=17%  Similarity=0.272  Sum_probs=171.1

Q ss_pred             CCCCCceeeeccCCcCEEEEEECC-CCCcEEEEecCCCcEEEEEccC---------CeeeeeeccccCCEEEEEECCC--
Q 022910           51 EQPDDSTHIFSGHSDEVYSVACSP-TDATLVATGGGDDKGFFWRINQ---------GDWASEIQGHKDSVSSLAFSMD--  118 (290)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~i~~~~~~~~--  118 (290)
                      ..........+.|.+.|..+.|.+ .-|+.+|+++.|+++.||.-..         .....++......|+.++|.|.  
T Consensus        46 s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl  125 (361)
T KOG2445|consen   46 SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL  125 (361)
T ss_pred             CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc
Confidence            344667788899999999999964 5678999999999999998621         1233456667789999999984  


Q ss_pred             CCEEEEEeCCCcEEEEcCCCCc------eEEEEe-------cCCCCEEEEEEcCC---CCEEEEeeCC-----CeEEEEE
Q 022910          119 GQLLASGGLDGLVQIWDPSSGN------LKCTLE-------GPGGGVEWVSWHPR---GHIVLAGSED-----STVWMWN  177 (290)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~------~~~~~~-------~~~~~i~~i~~~~~---~~~l~~~~~d-----g~i~i~d  177 (290)
                      |-.||+++.||.||||+....-      +...++       .+..+..|+.|+|.   ..+||+|+.+     +.++||.
T Consensus       126 GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye  205 (361)
T KOG2445|consen  126 GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE  205 (361)
T ss_pred             ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence            5689999999999999875432      222222       35567889999973   4588888875     4788886


Q ss_pred             CCcc----cEEEeeecCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEcCCCC-----------------eeeEEEeCC
Q 022910          178 ADRA----AYLNMFSGHGSSVTCGDFTPD----GKTICTGSDDATLRVWNPKSG-----------------ENIHVIRGH  232 (290)
Q Consensus       178 ~~~~----~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~-----------------~~~~~~~~~  232 (290)
                      ....    ..+..+..|..+|+.|+|.|+    -.+|++++.|| |+||.++..                 -.+..+..+
T Consensus       206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~  284 (361)
T KOG2445|consen  206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL  284 (361)
T ss_pred             ecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence            5433    345667789999999999994    24689999999 999998731                 123444555


Q ss_pred             CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---CcEEEEEcc
Q 022910          233 PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT---GKVVSSLVS  276 (290)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~---~~~~~~~~~  276 (290)
                      ..|.+.|..+.|+-.|..|++.+.||.||+|...-   .+++..+..
T Consensus       285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~  331 (361)
T KOG2445|consen  285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKA  331 (361)
T ss_pred             cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEec
Confidence            56999999999999999999999999999998642   345555543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=1.5e-22  Score=161.86  Aligned_cols=236  Identities=19%  Similarity=0.206  Sum_probs=183.6

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--cccCCEEEEEECCCCCEEEEEeCCCc
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGL  130 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (290)
                      ....+..+..|..+|.+|.|+|.+...+++.+.||+|++-|++.+.....+.  .....+..+.|+.+...++.+..=|.
T Consensus       223 d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~  302 (498)
T KOG4328|consen  223 DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGN  302 (498)
T ss_pred             ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccc
Confidence            3556788899999999999999988999999999999999998865433333  24556778888888888888887789


Q ss_pred             EEEEcCCCCce-EEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccE----EEeeecCCCCeEEEEEcCCCC
Q 022910          131 VQIWDPSSGNL-KCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       131 i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~  204 (290)
                      +.+||++++.. ...+..|...|+.|+++|... +||+++.|++.+|||+|....    +.....|...|.+..|||.+.
T Consensus       303 f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g  382 (498)
T KOG4328|consen  303 FNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG  382 (498)
T ss_pred             eEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence            99999998765 555667888999999999654 789999999999999987532    223345899999999999887


Q ss_pred             EEEEEeCCCeEEEEcCC----CCeeeEEEeCCCCcccC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910          205 TICTGSDDATLRVWNPK----SGENIHVIRGHPYHTEG--LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  278 (290)
                      .|++.+.|..|+|||..    ...+...+.....+...  .....|.|+..++++|..-..|-|+|-..++.+..+....
T Consensus       383 tl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~  462 (498)
T KOG4328|consen  383 TLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE  462 (498)
T ss_pred             ceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc
Confidence            79999999999999983    33344444422112122  3356899999999999999999999998888788765443


Q ss_pred             C-cEEEE-EEec
Q 022910          279 D-SIECI-GFSR  288 (290)
Q Consensus       279 ~-~v~~i-~~s~  288 (290)
                      . .|.++ .|+|
T Consensus       463 ~~tI~~vn~~HP  474 (498)
T KOG4328|consen  463 SSTIPSVNEFHP  474 (498)
T ss_pred             ccccccceeecc
Confidence            3 45443 5666

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=6.4e-21  Score=154.49  Aligned_cols=218  Identities=18%  Similarity=0.373  Sum_probs=178.5

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee---cc-ccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI---QG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (290)
                      ..+..|....|+|.+.+++++++. |.+.+|+++.+...++.   .. ....|.|++|.++|+ +++|..+|.|.||+..
T Consensus       198 ~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~  275 (626)
T KOG2106|consen  198 TSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG  275 (626)
T ss_pred             eccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC
Confidence            345678899999999999999875 88999999987665543   22 236799999999887 7889999999999998


Q ss_pred             CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-----------E-----------------------
Q 022910          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----------Y-----------------------  183 (290)
Q Consensus       138 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~-----------------------  183 (290)
                      +.+..+....|.+.|.+++.-.+|.+|- |+.|..|..||-.-.+           .                       
T Consensus       276 ~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G  354 (626)
T KOG2106|consen  276 TNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG  354 (626)
T ss_pred             CceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence            8888777779999999999998887655 9999999999832110           0                       


Q ss_pred             ------EEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 022910          184 ------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD  257 (290)
Q Consensus       184 ------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  257 (290)
                            .....+|......++.+|..+.+++++.|+.+++|+  ..++.....    ...++.++.|+|.| .++.|+..
T Consensus       355 t~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt~~  427 (626)
T KOG2106|consen  355 TLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI----IEDPAECADFHPSG-VVAVGTAT  427 (626)
T ss_pred             eecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE----ecCceeEeeccCcc-eEEEeecc
Confidence                  012235777889999999999999999999999999  445555554    46788999999999 99999999


Q ss_pred             CcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       258 g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      |...+.|..+...+..-.. +.+++.++|+|+|
T Consensus       428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G  459 (626)
T KOG2106|consen  428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDG  459 (626)
T ss_pred             ceEEEEecccceeEEEEec-CCceEEEEEcCCC
Confidence            9999999999666665555 8899999999997

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=1.2e-22  Score=170.82  Aligned_cols=211  Identities=19%  Similarity=0.305  Sum_probs=179.7

Q ss_pred             CCceeeeccCCcCEEEEEECCC--CCcEEEEecCCCcEEEEEccCC-eeeeeeccccCCEEEEEECCCC--CEEEEEeCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPT--DATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDG--QLLASGGLD  128 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d  128 (290)
                      ......+..|...|.|+.|+..  ..++||+++.|+.|.|||+... .++.++.+|...|+++.|.-+|  ..+++++.|
T Consensus       491 l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGAD  570 (1080)
T KOG1408|consen  491 LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD  570 (1080)
T ss_pred             hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence            4456677789999999999853  4579999999999999999764 4667889999999999998766  589999999


Q ss_pred             CcEEEEcCCCCceEEEEec-----CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec---CCCCeEEEEEc
Q 022910          129 GLVQIWDPSSGNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG---HGSSVTCGDFT  200 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~  200 (290)
                      ..|.+--.....-...+..     ....+..|+..|..+++++++.|..|+||++..++..+.|++   |.+....+...
T Consensus       571 ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lD  650 (1080)
T KOG1408|consen  571 KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILD  650 (1080)
T ss_pred             hhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEEC
Confidence            9887654442222222222     234689999999999999999999999999999999999876   55667788999


Q ss_pred             CCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       201 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      |.|.|+++.+.|.+|.+||..+++++..+.+   |...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus       651 PSgiY~atScsdktl~~~Df~sgEcvA~m~G---HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  651 PSGIYLATSCSDKTLCFVDFVSGECVAQMTG---HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             CCccEEEEeecCCceEEEEeccchhhhhhcC---cchheeeeeecccchhheeecCCceEEEEECch
Confidence            9999999999999999999999999998888   889999999999999999999999999999854

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.4e-23  Score=182.85  Aligned_cols=215  Identities=20%  Similarity=0.383  Sum_probs=179.4

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--cccCCEEEEEECCCCC-EEEEEeCC
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQ-LLASGGLD  128 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~-~l~~~~~d  128 (290)
                      .....+..+..|+++|..+.|++..+++||+|+.+|.|.|||+++.+......  .....|.+++|+..-. .|++++.+
T Consensus       104 ~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s  183 (1049)
T KOG0307|consen  104 ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS  183 (1049)
T ss_pred             cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC
Confidence            34556778889999999999999888899999999999999999865554442  2457899999986544 68888999


Q ss_pred             CcEEEEcCCCCceEEEEecCCC--CEEEEEEcCCCC-EEEEeeCCC---eEEEEECCcc-cEEEeeecCCCCeEEEEEcC
Q 022910          129 GLVQIWDPSSGNLKCTLEGPGG--GVEWVSWHPRGH-IVLAGSEDS---TVWMWNADRA-AYLNMFSGHGSSVTCGDFTP  201 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~~-~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~  201 (290)
                      |.+.|||++..+.+..+..+.+  .+..++|||+.. .|++++.|.   .|.+||+|.. .+++.+.+|...|.++.|++
T Consensus       184 g~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~  263 (1049)
T KOG0307|consen  184 GRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCP  263 (1049)
T ss_pred             CCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCC
Confidence            9999999999988877765544  477899999754 666666543   5999999864 57788889999999999999


Q ss_pred             CC-CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc
Q 022910          202 DG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGK  269 (290)
Q Consensus       202 ~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~  269 (290)
                      .+ .+|++++.|++|.+|+..+++.+..+..   ....+..+.|+|. ...+++++-||.|-||.+.+..
T Consensus       264 ~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~---~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  264 QDPRLLLSSGKDNRIICWNPNTGEVLGELPA---QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCchhhhcccCCCCeeEecCCCceEeeecCC---CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            55 8889999999999999999998888876   6788999999994 4588899999999999987654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=5.9e-22  Score=150.14  Aligned_cols=228  Identities=22%  Similarity=0.409  Sum_probs=176.9

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCC-------CcEEEEEccCC---------eeeeeec-cccCCEEEEEECCC
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGD-------DKGFFWRINQG---------DWASEIQ-GHKDSVSSLAFSMD  118 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~---------~~~~~~~-~~~~~i~~~~~~~~  118 (290)
                      ....|..|.+.|..++-+|.++.+|+|+..+       -.+-||.+...         +.+..+. .+-+.|.|+.|.|+
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            3456778999999999999999999987542       23689988653         2333443 45668999999999


Q ss_pred             CCEEEEEeCCCcEEEEcCCCCce-EEEEec-----CCCCEEEEEEcC--CCCEEEEeeCCCeEEEEECCcccEEEeee-c
Q 022910          119 GQLLASGGLDGLVQIWDPSSGNL-KCTLEG-----PGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFS-G  189 (290)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~-----~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~  189 (290)
                      +..+++-. +..|.+|++..+.. +..+..     +....++-+|+|  +++.+++.+ ++++..||+|+.+....+. +
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dA  212 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDA  212 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhh
Confidence            99999877 78999999987765 333322     344577888998  666776654 6999999999987665554 5


Q ss_pred             CCCCeEEEEEcCCCC-EEEEEeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 022910          190 HGSSVTCGDFTPDGK-TICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       190 ~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~  266 (290)
                      |...|..+.|+|+.+ +|++|+.||.|+|||.|..+ +++.+..   |...|.++.|+| ..++|++|+.|..|.+|...
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~---HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG---HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC---CceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            888899999999765 56789999999999998654 3444444   889999999999 56789999999999999753


Q ss_pred             CC-----------------------------cEEEEEccCCCcEEEEEEec
Q 022910          267 TG-----------------------------KVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       267 ~~-----------------------------~~~~~~~~~~~~v~~i~~s~  288 (290)
                      +-                             .++.++..|...|++++||.
T Consensus       290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs  340 (370)
T KOG1007|consen  290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS  340 (370)
T ss_pred             ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence            21                             14557788999999999985

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.89  E-value=1.7e-22  Score=151.13  Aligned_cols=235  Identities=17%  Similarity=0.244  Sum_probs=179.6

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCc
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGL  130 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (290)
                      .|+.|...|++|.+.|+++.|-. +++ |.+|..-|.|++|.+.+.+....+. .+...|+.+.--|+ ..+.+-+.|+.
T Consensus         2 ~pPdP~fvLRp~~~~v~s~~fqa-~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~   78 (323)
T KOG0322|consen    2 VPPDPFFVLRPHSSSVTSVLFQA-NER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPL   78 (323)
T ss_pred             CCCCCeeEeccccchheehhhcc-chh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCce
Confidence            46789999999999999999987 444 7799999999999999988888777 57788999988887 56788888999


Q ss_pred             EEEEcCCCCceEEE---------------------------E--------------------------ecCCCCEEEEEE
Q 022910          131 VQIWDPSSGNLKCT---------------------------L--------------------------EGPGGGVEWVSW  157 (290)
Q Consensus       131 i~i~d~~~~~~~~~---------------------------~--------------------------~~~~~~i~~i~~  157 (290)
                      +.+|++.-+..+..                           +                          ....+.+.|..+
T Consensus        79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            99998764221110                           0                          001133444443


Q ss_pred             cC-CCC--EEEEeeCCCeEEEEECCccc----------EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe
Q 022910          158 HP-RGH--IVLAGSEDSTVWMWNADRAA----------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE  224 (290)
Q Consensus       158 ~~-~~~--~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  224 (290)
                      .. .+.  ++++|..+|.+.+||+.++.          .......|..+|.++.|.+.-..=++|+.+-.+..|.+....
T Consensus       159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~  238 (323)
T KOG0322|consen  159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST  238 (323)
T ss_pred             cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence            22 222  67788899999999999873          333445688999999998866666778888888899876431


Q ss_pred             e-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          225 N-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       225 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      . ...-..+.....++..+..-||++++|+++.|++||||..++..++..++-|.+.|.+++|+|+
T Consensus       239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd  304 (323)
T KOG0322|consen  239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD  304 (323)
T ss_pred             CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence            1 1111111114567889999999999999999999999999999999999999999999999997

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=3.2e-22  Score=153.97  Aligned_cols=226  Identities=19%  Similarity=0.312  Sum_probs=173.8

Q ss_pred             CCcCEEEEEECCC---CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCC-CEEEEEeCCCcEEEEcCCC
Q 022910           63 HSDEVYSVACSPT---DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSS  138 (290)
Q Consensus        63 h~~~v~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~  138 (290)
                      |...-+.++|+-+   +..++|+|+.-|.|+|.|+.+++....+.+|...|..+.|.|.. ++++++|.|..|++|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            5566677777642   34588888899999999999999999999999999999999965 6899999999999999999


Q ss_pred             CceEEEEe---cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE------E-------------------E---ee
Q 022910          139 GNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY------L-------------------N---MF  187 (290)
Q Consensus       139 ~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~-------------------~---~~  187 (290)
                      ..++..+-   +|...|.++.|++++.+|++++.|..|++|++...+.      .                   .   +-
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~  247 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT  247 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence            99998875   5888999999999999999999999999999984211      0                   0   11


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC-CCCee----------eEEEeCCCCcccCeEEEEE--cCCCCEEEEE
Q 022910          188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP-KSGEN----------IHVIRGHPYHTEGLTCLTI--SADSTLALSG  254 (290)
Q Consensus       188 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~----------~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~  254 (290)
                      ..|...|.|+.|-  |+++++-+.++.|..|.. +-.+.          ...+.........++.+.|  .|-+++||.|
T Consensus       248 diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g  325 (385)
T KOG1034|consen  248 DIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG  325 (385)
T ss_pred             ccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence            2356667777774  678999888999999987 22221          1122222224445666555  5668899999


Q ss_pred             eCCCcEEEEEcCCCcEE--EEEc--cCCCcEEEEEEecCC
Q 022910          255 SKDGSVHMVNITTGKVV--SSLV--SHTDSIECIGFSRSE  290 (290)
Q Consensus       255 ~~dg~i~~wd~~~~~~~--~~~~--~~~~~v~~i~~s~d~  290 (290)
                      ...|.|++||++...+.  .++.  .....|+..+||.||
T Consensus       326 nq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg  365 (385)
T KOG1034|consen  326 NQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG  365 (385)
T ss_pred             cCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC
Confidence            99999999999876552  2222  124689999999876

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=1.1e-22  Score=156.47  Aligned_cols=212  Identities=22%  Similarity=0.382  Sum_probs=165.8

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec---cccCCEEEEEECCCCCEEEEEeCCC
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      ..+....+.+|..+|+.+.|+|...+++++++.|..|++|++++..++..+.   +|...|.++.|++++.+|++++.|.
T Consensus       124 ~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh  203 (385)
T KOG1034|consen  124 SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH  203 (385)
T ss_pred             hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc
Confidence            5667788899999999999999888999999999999999999999988764   7999999999999999999999999


Q ss_pred             cEEEEcCCCCceEE----------------------------EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc-
Q 022910          130 LVQIWDPSSGNLKC----------------------------TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-  180 (290)
Q Consensus       130 ~i~i~d~~~~~~~~----------------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-  180 (290)
                      +|++|++...+...                            +..-|...|.|+.|-  |+++++-+-++.|..|...+ 
T Consensus       204 slk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl  281 (385)
T KOG1034|consen  204 SLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKL  281 (385)
T ss_pred             eEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchh
Confidence            99999997321100                            111244455555553  67899988889999998721 


Q ss_pred             c-------------cEEEeeecCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEcCCCCeee-EEEeCCCCcccCeEEEEE
Q 022910          181 A-------------AYLNMFSGHGSSVTCGDF--TPDGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTI  244 (290)
Q Consensus       181 ~-------------~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~  244 (290)
                      .             ..+..+......|.-+.|  .|-++.||.|.+.|.|++||++...+. .+...+......|...+|
T Consensus       282 ~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sf  361 (385)
T KOG1034|consen  282 EESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSF  361 (385)
T ss_pred             hhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeee
Confidence            1             123344444455555554  566789999999999999999987663 111122225678999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcC
Q 022910          245 SADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       245 ~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      +.++.+|+..+.|++|.-||..
T Consensus       362 S~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  362 SRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cccCcEEEEEeCCCcEEEEEee
Confidence            9999999999999999999964

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.6e-21  Score=147.75  Aligned_cols=199  Identities=18%  Similarity=0.220  Sum_probs=161.6

Q ss_pred             CCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (290)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (290)
                      +........+..|..+|.|+.+++ ....+++|+.|++|++||.........+. ....|.++..  .++.|++|+.+..
T Consensus        81 Dln~~~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~  156 (323)
T KOG1036|consen   81 DLNTGNEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRK  156 (323)
T ss_pred             EecCCcceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec--cCCEEEEeecCce
Confidence            345566677788999999999998 77788899999999999998755555555 4458888877  6778999999999


Q ss_pred             EEEEcCCCCceEEEEe--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc----cEEEeeecCC---------CCeE
Q 022910          131 VQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMFSGHG---------SSVT  195 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~---------~~i~  195 (290)
                      +.+||+++.....+..  .-...++|+++-|++.=+++++-+|.|.+=.+...    .....|+.|.         -+|.
T Consensus       157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVN  236 (323)
T KOG1036|consen  157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVN  236 (323)
T ss_pred             EEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEec
Confidence            9999999876543222  23457899999998888999999999998776655    3334444443         3799


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC
Q 022910          196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       196 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  256 (290)
                      +|+|+|--..|++|+.||.|.+||+.+.+.+..+..   ....|.+++|+.+|..||+++.
T Consensus       237 ai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~---~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  237 AIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK---YETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eeEeccccceEEecCCCceEEEccCcchhhhhhccC---CCCceEEEEeccCCCeEEEEec
Confidence            999999888999999999999999999888777775   4667999999999999999975

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.89  E-value=3e-23  Score=176.84  Aligned_cols=227  Identities=22%  Similarity=0.405  Sum_probs=179.6

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      .++.|.||.++|+|+.|.. .++++++|+.|..++||...+..+.....+|.+.|+.++.+.++.+++++|.|..|++|.
T Consensus       182 ~ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            4566789999999999998 888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEe---ee-cCCCCe-----------------
Q 022910          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM---FS-GHGSSV-----------------  194 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~-~~~~~i-----------------  194 (290)
                      +..+.++..+.+|.+.|++++|+|-.    +.+.||++++||.+-...+..   .. .....+                 
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            99999999999999999999999954    778899999999871100000   00 000111                 


Q ss_pred             ---------EEEEEcCCC-----------CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEE
Q 022910          195 ---------TCGDFTPDG-----------KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALS  253 (290)
Q Consensus       195 ---------~~~~~~~~~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  253 (290)
                               ..++|....           .+.+++-.+..+.+|++.++...+.+.+   |...+..+.++| +.+...+
T Consensus       337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g---hsd~~yvLd~Hpfn~ri~ms  413 (1113)
T KOG0644|consen  337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG---HSDEVYVLDVHPFNPRIAMS  413 (1113)
T ss_pred             CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc---cccceeeeeecCCCcHhhhh
Confidence                     112222222           2223333455677888888887777776   778899999999 6677788


Q ss_pred             EeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          254 GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       254 ~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ++.||.+.|||+..|.+++.+......+..-+||+||
T Consensus       414 ag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg  450 (1113)
T KOG0644|consen  414 AGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG  450 (1113)
T ss_pred             ccCCCceEeeecccCCcceeeecccceeeccccCCCC
Confidence            9999999999999999888766445667777899886

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=1.9e-21  Score=162.75  Aligned_cols=234  Identities=18%  Similarity=0.251  Sum_probs=188.0

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----eeeeeeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      -.+...+.||.+.|+.++|.| .+.+|++.+.|-+-|+|-.-..    -.+.+-+-|...++|++|-+....|++|....
T Consensus       351 w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEK  429 (764)
T KOG1063|consen  351 WTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEK  429 (764)
T ss_pred             eeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccce
Confidence            355667789999999999999 6678889999999999976522    22334456888999999988666789999899


Q ss_pred             cEEEEcCCC-------------------------------------------Cce-------------------------
Q 022910          130 LVQIWDPSS-------------------------------------------GNL-------------------------  141 (290)
Q Consensus       130 ~i~i~d~~~-------------------------------------------~~~-------------------------  141 (290)
                      .+|+|+...                                           |..                         
T Consensus       430 VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqL  509 (764)
T KOG1063|consen  430 VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQL  509 (764)
T ss_pred             eeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHH
Confidence            999997431                                           000                         


Q ss_pred             --------EEEEecCCCCEEEEEEcCCCCEEEEeeCC-----CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE
Q 022910          142 --------KCTLEGPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (290)
Q Consensus       142 --------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  208 (290)
                              ++.+.+|...|.+++.+|+++++|+++..     ..|++|+..+...++.+.+|.-.|+.|+|+|++++|++
T Consensus       510 q~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLs  589 (764)
T KOG1063|consen  510 QQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLS  589 (764)
T ss_pred             HHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEE
Confidence                    01135688899999999999999999864     35999999998888899999999999999999999999


Q ss_pred             EeCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--cEEEE--EccCCCcEEE
Q 022910          209 GSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--KVVSS--LVSHTDSIEC  283 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~--~~~~~~~v~~  283 (290)
                      .+.|+++.+|....... -..+...+.|..-|..+.|+|++.+++|++.|.+|++|.....  +.+..  ...+...|+.
T Consensus       590 vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA  669 (764)
T KOG1063|consen  590 VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA  669 (764)
T ss_pred             eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence            99999999998754332 1223334458889999999999999999999999999999877  55544  3357789999


Q ss_pred             EEEec
Q 022910          284 IGFSR  288 (290)
Q Consensus       284 i~~s~  288 (290)
                      ++|.|
T Consensus       670 v~~~~  674 (764)
T KOG1063|consen  670 VAYLP  674 (764)
T ss_pred             EEeec
Confidence            99876

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=1.3e-21  Score=163.74  Aligned_cols=212  Identities=23%  Similarity=0.308  Sum_probs=172.0

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCC-----cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDD-----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD  128 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  128 (290)
                      -+.++.|-||...|+|++.+| .++++|+++...     .|++|+..+...+..+.+|.-.|+.++|+|++++|++.+.|
T Consensus       515 wPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD  593 (764)
T KOG1063|consen  515 WPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD  593 (764)
T ss_pred             chhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence            456788899999999999999 889999987654     59999999988888999999999999999999999999999


Q ss_pred             CcEEEEcCCCCce----EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc--cEEEe--eecCCCCeEEEEEc
Q 022910          129 GLVQIWDPSSGNL----KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNM--FSGHGSSVTCGDFT  200 (290)
Q Consensus       129 g~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~--~~~~~~~i~~~~~~  200 (290)
                      +++.+|.......    ....+.|..-|.+..|+|++.+|+|++.|.+|++|.....  +.+..  ...+..+|++++|.
T Consensus       594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~  673 (764)
T KOG1063|consen  594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL  673 (764)
T ss_pred             ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence            9999998754321    1235678889999999999999999999999999998877  44433  23478899999998


Q ss_pred             C-----CCCEEEEEeCCCeEEEEcCCCC---------eeeEEEeCCCCcccCeEEEEEcCC----------CCEEEEEeC
Q 022910          201 P-----DGKTICTGSDDATLRVWNPKSG---------ENIHVIRGHPYHTEGLTCLTISAD----------STLALSGSK  256 (290)
Q Consensus       201 ~-----~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~  256 (290)
                      |     .+..+++|-..|.|.+|....-         .....+.....+...|+.+.|.|.          ...|++|+.
T Consensus       674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~  753 (764)
T KOG1063|consen  674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD  753 (764)
T ss_pred             ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence            8     2347789999999999985511         111222333347788999999974          235799999


Q ss_pred             CCcEEEEEcC
Q 022910          257 DGSVHMVNIT  266 (290)
Q Consensus       257 dg~i~~wd~~  266 (290)
                      |..++++++.
T Consensus       754 D~~vri~nv~  763 (764)
T KOG1063|consen  754 DESVRIFNVD  763 (764)
T ss_pred             cceeEEeecc
Confidence            9999999864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.8e-21  Score=147.14  Aligned_cols=201  Identities=19%  Similarity=0.353  Sum_probs=163.2

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC-
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-  137 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-  137 (290)
                      .-+.|+-.|..+-... ++.+|++++.|..|.+|++. |+.+..+......-+..+.+|+|+++++++...-|++|.+- 
T Consensus       182 f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f  259 (420)
T KOG2096|consen  182 FERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIF  259 (420)
T ss_pred             cchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence            3345777777777776 78899999999999999998 88888887777777889999999999999999999999863 


Q ss_pred             --CC-----ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-------cEEEee----ecCCCCeEEEEE
Q 022910          138 --SG-----NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-------AYLNMF----SGHGSSVTCGDF  199 (290)
Q Consensus       138 --~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~----~~~~~~i~~~~~  199 (290)
                        .|     ..+..+++|...|..++|+++...+++.+.||.+++||+.-.       +.++..    ....+....+.+
T Consensus       260 ~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~l  339 (420)
T KOG2096|consen  260 TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLEL  339 (420)
T ss_pred             ccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEe
Confidence              22     345678999999999999999999999999999999997532       122222    112334458999


Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       200 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      +|.|+.|+++. ...|++|..++++....+...  |...|.+++|+++|+++++++ |..++++.-
T Consensus       340 sP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcG-dr~vrv~~n  401 (420)
T KOG2096|consen  340 SPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI--HSTTISSISYSSDGKYIATCG-DRYVRVIRN  401 (420)
T ss_pred             CCCCcEEEeec-CCceEEEEcccCccchhHHHh--hcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence            99999888765 457999999998877666544  889999999999999999886 678888763

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.4e-21  Score=147.74  Aligned_cols=179  Identities=18%  Similarity=0.224  Sum_probs=143.3

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec
Q 022910          110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG  189 (290)
Q Consensus       110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  189 (290)
                      ..|+.|++.|.+||+|+.+|.|.|||+.+..+...+.+|..+|++++|+++|+.|++++.|..|.+||+..+.+++++. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999998887 


Q ss_pred             CCCCeEEEEEcCCC-CEEEEEeCCCeEEEEcCCCCeeeEEEeCCC--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          190 HGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       190 ~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      ..++|+...|+|.. +.+++.-.+..-.+.++..+.. ..+....  .......+..|.+.|+++++|...|.+.+++..
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence            78899999999943 3344433344444555543221 1222111  112223344688999999999999999999999


Q ss_pred             CCcEEEEEccCC-CcEEEEEEecCC
Q 022910          267 TGKVVSSLVSHT-DSIECIGFSRSE  290 (290)
Q Consensus       267 ~~~~~~~~~~~~-~~v~~i~~s~d~  290 (290)
                      +.+++.+++... ..|.+|.|+..|
T Consensus       184 t~e~vas~rits~~~IK~I~~s~~g  208 (405)
T KOG1273|consen  184 TLECVASFRITSVQAIKQIIVSRKG  208 (405)
T ss_pred             hheeeeeeeechheeeeEEEEeccC
Confidence            999999988655 678888887653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.8e-20  Score=136.76  Aligned_cols=215  Identities=18%  Similarity=0.275  Sum_probs=163.3

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccC---------C-eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQ---------G-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---------~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (290)
                      ..|.+-+|+| .+++|++|..+|.|.++.+..         + ..+...++|.++|+.++|.  ..+|++|+ ||.|+-|
T Consensus        11 ~tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   11 NTVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence            4566778999 788999999999999999864         1 2344558899999999996  55677766 5999998


Q ss_pred             cCCCCce------EEEEe-------cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC
Q 022910          135 DPSSGNL------KCTLE-------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP  201 (290)
Q Consensus       135 d~~~~~~------~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  201 (290)
                      ..+....      +...+       ..-..|++|...|..+.+++++.|+.++-||+++++..+.+++|...|.++.--.
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~  166 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN  166 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence            7653211      11111       1123589999999988888888999999999999999999999999999998855


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC-------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910          202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPY-------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  274 (290)
                      ....+++|+.||++|+||+++++.+..+...+.       ....|-+++.  +..+|++|+ ...+.+|++++.++...|
T Consensus       167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vf  243 (325)
T KOG0649|consen  167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVF  243 (325)
T ss_pred             cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEE
Confidence            566799999999999999999999888765431       1223445554  556887775 457999999998877776


Q ss_pred             ccCCCcEEEEEEe
Q 022910          275 VSHTDSIECIGFS  287 (290)
Q Consensus       275 ~~~~~~v~~i~~s  287 (290)
                      +. .++|..+.|-
T Consensus       244 pi-pa~v~~v~F~  255 (325)
T KOG0649|consen  244 PI-PARVHLVDFV  255 (325)
T ss_pred             ec-ccceeEeeee
Confidence            54 3445555443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.88  E-value=1.7e-20  Score=144.13  Aligned_cols=225  Identities=16%  Similarity=0.214  Sum_probs=177.4

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (290)
                      ..+.--..+|+|.+|++ ++..+|++.....|.||.....+   ...+++.|...|+++.|+|..+.|++|+.|..-++|
T Consensus         4 ~~~~~~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen    4 VVFHRLLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             EEeeeccCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence            44555678999999999 88899999999999999987654   677889999999999999999999999999999999


Q ss_pred             cCCC-C--ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE----EEeeecCCCCeEEEEEcCCCCEEE
Q 022910          135 DPSS-G--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGKTIC  207 (290)
Q Consensus       135 d~~~-~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~  207 (290)
                      .... +  ++...+..+....+++.|+|.++.||+|+....|.||-++...-    ...-+.+.+.|.++.|+|++-+|+
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla  162 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA  162 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence            9843 3  44555666888899999999999999999999999998876532    122234678899999999999999


Q ss_pred             EEeCCCeEEEEcCCC------------------CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 022910          208 TGSDDATLRVWNPKS------------------GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (290)
Q Consensus       208 ~~~~dg~i~i~d~~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  269 (290)
                      +|+.|+..|||...-                  |+.+..+.   ...+.+..+.|+|.|..|+-.+.|+.+.+-|.....
T Consensus       163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            999999999986421                  01111111   256789999999999999999999999999976654


Q ss_pred             -EEEEEccCCCcEEEEEE
Q 022910          270 -VVSSLVSHTDSIECIGF  286 (290)
Q Consensus       270 -~~~~~~~~~~~v~~i~~  286 (290)
                       .+..+....-+.+++.|
T Consensus       240 ~~v~~~~~~~lP~ls~~~  257 (361)
T KOG1523|consen  240 ERVQSVATAQLPLLSVSW  257 (361)
T ss_pred             hhccchhhccCCceeeEe
Confidence             33333322245555554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.88  E-value=1.8e-20  Score=160.02  Aligned_cols=222  Identities=20%  Similarity=0.269  Sum_probs=158.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCC---CcEEEEEccCCee--eeeeccccCCEEEEEECCCCCEEEEEe-C
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGD---DKGFFWRINQGDW--ASEIQGHKDSVSSLAFSMDGQLLASGG-L  127 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  127 (290)
                      ....+.+..|...+.+.+|+| ++..|+..+.+   ..|++|++.+++.  +..+.+   ....++|+|+|++|+.++ .
T Consensus       193 g~~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~  268 (429)
T PRK01742        193 GFNQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSK  268 (429)
T ss_pred             CCCceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEec
Confidence            333566788888999999999 55555555432   4799999988753  333333   344689999999888764 5


Q ss_pred             CCcEEEE--cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee-CCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcCCC
Q 022910          128 DGLVQIW--DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDG  203 (290)
Q Consensus       128 dg~i~i~--d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~  203 (290)
                      +|.+.||  ++.+++. ..+..+...+....|+|+|+.|+.++ .+|...+|++... .....+ .+..  ....|+|+|
T Consensus       269 ~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG  344 (429)
T PRK01742        269 DGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADG  344 (429)
T ss_pred             CCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCC
Confidence            7765555  6666654 44555666788899999999877655 5677777776432 122223 2333  457899999


Q ss_pred             CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCcEEEEEccCCCcE
Q 022910          204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI--TTGKVVSSLVSHTDSI  281 (290)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~--~~~~~~~~~~~~~~~v  281 (290)
                      ++|+..+.++ +.+||+.+++.......   .  ....+.|+|+|++|+.++.+|.+.+|.+  .+|+.++.+..|.+.+
T Consensus       345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~---~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~  418 (429)
T PRK01742        345 KTLVMINGDN-VVKQDLTSGSTEVLSST---F--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV  418 (429)
T ss_pred             CEEEEEcCCC-EEEEECCCCCeEEecCC---C--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCC
Confidence            9998887765 56699988865432222   1  2346789999999999999998888876  3688899999888899


Q ss_pred             EEEEEecC
Q 022910          282 ECIGFSRS  289 (290)
Q Consensus       282 ~~i~~s~d  289 (290)
                      ...+|||-
T Consensus       419 ~~p~wsp~  426 (429)
T PRK01742        419 KFPAWSPY  426 (429)
T ss_pred             CCcccCCC
Confidence            99999983

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=5.2e-19  Score=150.38  Aligned_cols=227  Identities=33%  Similarity=0.648  Sum_probs=189.0

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-eeeeecccc-CCEEEEEE-CCCCC-EEEEEeC-CCcEE
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQGHK-DSVSSLAF-SMDGQ-LLASGGL-DGLVQ  132 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~-~~i~~~~~-~~~~~-~l~~~~~-dg~i~  132 (290)
                      ..+..|...|.++.+.+ .+..++.++.++.+.+|+...+. ....+..+. ..+..+.+ .+++. .++..+. ++.+.
T Consensus        59 ~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          59 LLLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             heeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence            46789999999999999 77778888899999999999886 666666544 37777777 78887 5555444 89999


Q ss_pred             EEcCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCC-EEEEE
Q 022910          133 IWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTG  209 (290)
Q Consensus       133 i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  209 (290)
                      +|+... ......+..|...|..++|+|++.++++++. ++.+++|++.....+..+..|...+.+++|+|++. +++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  217 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG  217 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence            999998 7788888899999999999999998888886 99999999999888888988999999999999988 45555


Q ss_pred             eCCCeEEEEcCCCCeeeE-EEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE-EEEEccCCCcEEEEEEe
Q 022910          210 SDDATLRVWNPKSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-VSSLVSHTDSIECIGFS  287 (290)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~i~~s  287 (290)
                      +.|+.|++||...+.... .+..   |.... ...|+|++.++++++.++.+++|++..... +..+..|...|.++.|+
T Consensus       218 ~~d~~i~~wd~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  293 (466)
T COG2319         218 SSDGTIRLWDLSTGKLLRSTLSG---HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS  293 (466)
T ss_pred             cCCCcEEEEECCCCcEEeeecCC---CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence            899999999988777666 4554   44443 338999998999999999999999987665 55556788999999999


Q ss_pred             cC
Q 022910          288 RS  289 (290)
Q Consensus       288 ~d  289 (290)
                      |+
T Consensus       294 ~~  295 (466)
T COG2319         294 PD  295 (466)
T ss_pred             CC
Confidence            84

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=7.5e-21  Score=150.19  Aligned_cols=215  Identities=27%  Similarity=0.416  Sum_probs=163.7

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc--------C--------CeeeeeeccccCCEEEEEE
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--------Q--------GDWASEIQGHKDSVSSLAF  115 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~--------~--------~~~~~~~~~~~~~i~~~~~  115 (290)
                      ..-+....|..|..+|+++.|+| .+.+||+|+.+|.|.+|...        +        ......+.+|...|..++|
T Consensus        53 ~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W  131 (434)
T KOG1009|consen   53 MKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW  131 (434)
T ss_pred             eeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhc
Confidence            34566788899999999999999 88999999999999999876        2        1234456789999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-------
Q 022910          116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-------  188 (290)
Q Consensus       116 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------  188 (290)
                      +|++.++++++.|..+++||+..|+....+..|...+..++|.|-+.++++-+.|...+.+.+...+.+....       
T Consensus       132 s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~  211 (434)
T KOG1009|consen  132 SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK  211 (434)
T ss_pred             cCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence            9999999999999999999999999999999999999999999999999988888766666554322111000       


Q ss_pred             ---c---------C----CCCeEEEEEcCCCCE-----------------------------------------------
Q 022910          189 ---G---------H----GSSVTCGDFTPDGKT-----------------------------------------------  205 (290)
Q Consensus       189 ---~---------~----~~~i~~~~~~~~~~~-----------------------------------------------  205 (290)
                         .         |    ..-...++|+|+|.+                                               
T Consensus       212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~  291 (434)
T KOG1009|consen  212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS  291 (434)
T ss_pred             ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence               0         0    001122233333322                                               


Q ss_pred             -----------------------EEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910          206 -----------------------ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (290)
Q Consensus       206 -----------------------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  262 (290)
                                             +++++. ..|++||..+..++..+...  |-..++.++|+++|.+|+..+.||...+
T Consensus       292 pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~ni--hy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  292 PVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNI--HYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             eeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeee--eeeeecceeecCCCcEEEEeccCCceEE
Confidence                                   334443 35777777777776666654  7889999999999999999999998888


Q ss_pred             EEcCCCcE
Q 022910          263 VNITTGKV  270 (290)
Q Consensus       263 wd~~~~~~  270 (290)
                      .-+...++
T Consensus       369 vtfe~~el  376 (434)
T KOG1009|consen  369 VTFEPWEL  376 (434)
T ss_pred             EEEcchhc
Confidence            77765543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=2.7e-21  Score=156.44  Aligned_cols=221  Identities=17%  Similarity=0.244  Sum_probs=173.8

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCC--eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (290)
                      +.++.|+......+++.+.|..+++|.-...  +....-+.....-.|++......|+++|+..+.|+|||++...+.+.
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~  116 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF  116 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh
Confidence            8899998743334445566788999975432  11111111112334555555568999999999999999998777888


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC-CCCeEEEEEcCCCCEE-EEEeCCCeEEEEcCCC
Q 022910          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-GSSVTCGDFTPDGKTI-CTGSDDATLRVWNPKS  222 (290)
Q Consensus       145 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~  222 (290)
                      ++.|...|+++.++-...+||+++..|.|.|..+.++.....+... ...|+-+.|+|..+.+ .+++.+|.|.+||+..
T Consensus       117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g  196 (673)
T KOG4378|consen  117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG  196 (673)
T ss_pred             ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence            8999999999999999999999999999999999999877777755 4456689999977655 5789999999999987


Q ss_pred             CeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          223 GENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ..++..+.  ..|..+...++|+| +..+|++.+.|..|.+||+++.+....+.. ..+.+.++|+++|
T Consensus       197 ~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G  262 (673)
T KOG4378|consen  197 MSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECG  262 (673)
T ss_pred             CCcccchh--hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCc
Confidence            76655443  34889999999999 667889999999999999998877777764 6799999999987

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=1.8e-20  Score=148.07  Aligned_cols=226  Identities=23%  Similarity=0.397  Sum_probs=176.5

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---------eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      -..+|..+.|.+++...+|||+.|..|++|.+..+.         ....+..|...|+++.|+|+|..||+|+.+|.|.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            356899999999766699999999999999987532         34456789999999999999999999999999999


Q ss_pred             EcCC--------C--------CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEE
Q 022910          134 WDPS--------S--------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG  197 (290)
Q Consensus       134 ~d~~--------~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  197 (290)
                      |-..        +        -.....+.+|...|..++|+|++.++++++-|..+++||+..++....+..|...+..+
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            9765        2        12234566788899999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEe-----CC---------------CCcccCeEEEEEcCCCCEEEEEeC-
Q 022910          198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIR-----GH---------------PYHTEGLTCLTISADSTLALSGSK-  256 (290)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~---------------~~~~~~v~~~~~~~~~~~l~~~~~-  256 (290)
                      +|.|-++++++-+.|...+++.+...+.+..+.     ..               .....-...++|+|+|.+|++... 
T Consensus       172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~  251 (434)
T KOG1009|consen  172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL  251 (434)
T ss_pred             ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence            999999999998888877777765443332221     00               001223456789999999998643 


Q ss_pred             ---CCc-----EEEEEcCC-CcEEEEEccCCCcEEEEEEec
Q 022910          257 ---DGS-----VHMVNITT-GKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       257 ---dg~-----i~~wd~~~-~~~~~~~~~~~~~v~~i~~s~  288 (290)
                         .+.     .++|+-+. .+++..+.....+...+.|+|
T Consensus       252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p  292 (434)
T KOG1009|consen  252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP  292 (434)
T ss_pred             eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence               232     34444332 346666777777777887776

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=1.2e-18  Score=148.06  Aligned_cols=227  Identities=33%  Similarity=0.641  Sum_probs=188.7

Q ss_pred             ceeeeccCCc-CEEEEEE-CCCCCcEEEEe-cCCCcEEEEEccC-CeeeeeeccccCCEEEEEECCCCCEEEEEeC-CCc
Q 022910           56 STHIFSGHSD-EVYSVAC-SPTDATLVATG-GGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGL  130 (290)
Q Consensus        56 ~~~~~~~h~~-~v~~~~~-~~~~~~~l~~~-~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~  130 (290)
                      ....+.++.. .+..+.+ .+....+++.. ..++.+.+|+... ......+..|...|..++|+|++.++++++. ++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  179 (466)
T COG2319         100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT  179 (466)
T ss_pred             eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence            5666666443 7777777 77444245444 4499999999998 7788888899999999999999998888886 999


Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEE-eeecCCCCeEEEEEcCCCCEEEE
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICT  208 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~  208 (290)
                      +++|++..+..+..+..|...+.+++|+|++. .+++++.++.|++||...+..+. .+..|.... ...|+|++.++++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  258 (466)
T COG2319         180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS  258 (466)
T ss_pred             eEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE
Confidence            99999999888989998999999999999998 55555899999999998777777 677777775 4489999988999


Q ss_pred             EeCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc--cCCCcEEEEE
Q 022910          209 GSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV--SHTDSIECIG  285 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~i~  285 (290)
                      ++.++.+++|+++.... ...+   ..|...+.++.|.|++..+++++.|+.+.+|+..+........  .|...|..+.
T Consensus       259 ~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (466)
T COG2319         259 GSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS  335 (466)
T ss_pred             ecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE
Confidence            99999999999987765 4444   2268899999999988888889999999999999888777776  7877888888


Q ss_pred             E
Q 022910          286 F  286 (290)
Q Consensus       286 ~  286 (290)
                      |
T Consensus       336 ~  336 (466)
T COG2319         336 F  336 (466)
T ss_pred             E
Confidence            8

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=7.2e-21  Score=151.04  Aligned_cols=196  Identities=22%  Similarity=0.247  Sum_probs=158.6

Q ss_pred             EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec
Q 022910           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (290)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (290)
                      .+++|+. ++..+++|+.||++|+|++.....+.....|...|.++.|+|+|++|++.+.+ ..+||+..++..+.....
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999 88899999999999999999888888888899999999999999999999999 899999999976665542


Q ss_pred             --CCCCEEEEEEcCCC---C--EEEEeeCCCeEEEEECCcccE-----EEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910          148 --PGGGVEWVSWHPRG---H--IVLAGSEDSTVWMWNADRAAY-----LNMFSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       148 --~~~~i~~i~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                        ....+..+.|+.++   .  .++.....+.|+.|++.....     .++.......|++++.+++|++++.|+.+|.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence              22346667787766   3  333333456677776643221     22222234579999999999999999999999


Q ss_pred             EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      .|++..+.+.++.++..  |...|+.+.|+|+.+++++.+.+..+.+..+.-
T Consensus       306 ai~~~~~lq~~~~vk~a--H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEA--HLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEeceeeeeEeehhh--heeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99999998887777654  888999999999999999999999888887653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.87  E-value=2.7e-20  Score=141.25  Aligned_cols=213  Identities=20%  Similarity=0.338  Sum_probs=163.7

Q ss_pred             CCCCceeeec-cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee-eeeec-----cccCCEEEEEECC--CCCEE
Q 022910           52 QPDDSTHIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQ-----GHKDSVSSLAFSM--DGQLL  122 (290)
Q Consensus        52 ~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~-----~~~~~i~~~~~~~--~~~~l  122 (290)
                      .+.+.+..|. .+-+.|.|+.|.| ++..+++-. +..|.+|++..+.. +..+.     .+....++-+|+|  +++.+
T Consensus       110 ~tlE~v~~Ldteavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv  187 (370)
T KOG1007|consen  110 STLECVASLDTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV  187 (370)
T ss_pred             chhhHhhcCCHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence            4455666665 6777999999999 555555544 78999999987654 33222     3566788889998  67777


Q ss_pred             EEEeCCCcEEEEcCCCCceEEEEe-cCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEE
Q 022910          123 ASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDF  199 (290)
Q Consensus       123 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~  199 (290)
                      ++.+ ++++..||+++.+....+. .|...+..+.|+|+.. +|++++.||.|++||+|.. .+++.+.+|...|.++.|
T Consensus       188 ~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf  266 (370)
T KOG1007|consen  188 ATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF  266 (370)
T ss_pred             EEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence            7755 8999999999987776664 5778899999999765 7889999999999999875 478889999999999999


Q ss_pred             cC-CCCEEEEEeCCCeEEEEcCCCCe---------------------ee-----EEEeCCCCcccCeEEEEEcC-CCCEE
Q 022910          200 TP-DGKTICTGSDDATLRVWNPKSGE---------------------NI-----HVIRGHPYHTEGLTCLTISA-DSTLA  251 (290)
Q Consensus       200 ~~-~~~~l~~~~~dg~i~i~d~~~~~---------------------~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l  251 (290)
                      +| ..+++++|+.|..|.+|...+-.                     ..     ..+.....|...|.+++|+. +.-++
T Consensus       267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF  346 (370)
T KOG1007|consen  267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF  346 (370)
T ss_pred             cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence            99 45678899999999999754321                     00     11222334888999999997 55677


Q ss_pred             EEEeCCCcEEEEEcCC
Q 022910          252 LSGSKDGSVHMVNITT  267 (290)
Q Consensus       252 ~~~~~dg~i~~wd~~~  267 (290)
                      |+-+.||++.|=.+..
T Consensus       347 ASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  347 ASLSYDGRVIISSVPR  362 (370)
T ss_pred             EEeccCceEEeecCCh
Confidence            8889999998866643

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=2.1e-20  Score=155.34  Aligned_cols=199  Identities=17%  Similarity=0.303  Sum_probs=152.3

Q ss_pred             EEECC--CCCcEEEEecCCCcEEEEEccCCeee------eeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 022910           70 VACSP--TDATLVATGGGDDKGFFWRINQGDWA------SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (290)
Q Consensus        70 ~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (290)
                      ..|++  ....+||.+..+|.|.++|.......      .....|.+.|..+.|-|....|++++.|.++++||+.+.++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            44544  35579999999999999998764322      44557999999999999666899999999999999999988


Q ss_pred             EEE--EecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCccc---------------------------EEEeeecCC
Q 022910          142 KCT--LEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAA---------------------------YLNMFSGHG  191 (290)
Q Consensus       142 ~~~--~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~---------------------------~~~~~~~~~  191 (290)
                      +..  +.+|.+.+.+++|+|.. ..|++|+.||.|.|||++-..                           .+.....+.
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s  214 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS  214 (720)
T ss_pred             ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence            766  88999999999999954 588999999999999987432                           011122334


Q ss_pred             CCeEE---EEEcCCCCEEEEEeC-CCeEEEEcCCCCeeeEEEe-----CCCCc---ccCeEEEEEcCCCCEEEEEeCCCc
Q 022910          192 SSVTC---GDFTPDGKTICTGSD-DATLRVWNPKSGENIHVIR-----GHPYH---TEGLTCLTISADSTLALSGSKDGS  259 (290)
Q Consensus       192 ~~i~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-----~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~  259 (290)
                      ..|.+   +.+..|...|++++. |+.|+|||++.........     ..+.+   ...++++.....|.+|++.+.|+.
T Consensus       215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s  294 (720)
T KOG0321|consen  215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS  294 (720)
T ss_pred             CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence            44444   445567788888777 9999999999765433221     11112   446788888888899999999999


Q ss_pred             EEEEEcCCC
Q 022910          260 VHMVNITTG  268 (290)
Q Consensus       260 i~~wd~~~~  268 (290)
                      |++|++.+-
T Consensus       295 Iy~ynm~s~  303 (720)
T KOG0321|consen  295 IYFYNMRSL  303 (720)
T ss_pred             EEEEecccc
Confidence            999999753

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=3.6e-20  Score=140.65  Aligned_cols=223  Identities=16%  Similarity=0.213  Sum_probs=169.6

Q ss_pred             ccCCcCEEEEEECCCC----CcEEEEecCCCcEEEEEccCC--ee--eee-----eccccCCEEEEEECC-CCCEEEEEe
Q 022910           61 SGHSDEVYSVACSPTD----ATLVATGGGDDKGFFWRINQG--DW--ASE-----IQGHKDSVSSLAFSM-DGQLLASGG  126 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~--~~--~~~-----~~~~~~~i~~~~~~~-~~~~l~~~~  126 (290)
                      ..|.-+++.+.|.|+.    +.+|||++  ..+|+|.+...  +.  ...     -..+..++++..|+. +-++|.++|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            3588899999999943    25777765  68999998742  11  111     124667999999986 667899999


Q ss_pred             CCCcEEEEcCCCCc---eEEEEecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCcccEEEee---ecCCCCeEEEEE
Q 022910          127 LDGLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDF  199 (290)
Q Consensus       127 ~dg~i~i~d~~~~~---~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~  199 (290)
                      -|-+-.|||++++.   ....+-.|...|..++|...+ ..||+.+.||.+++||+|.......+   .....+...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            99999999999873   356677899999999999855 48999999999999999986543333   223567889999


Q ss_pred             cC-CCCEEEEEeCC-CeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCc------
Q 022910          200 TP-DGKTICTGSDD-ATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGK------  269 (290)
Q Consensus       200 ~~-~~~~l~~~~~d-g~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~------  269 (290)
                      ++ +.+++++-..| ..|.|.|+|... ++..++.   |...|+.++|.| ....|++++.|..+.+||+...-      
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~---H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d  327 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN---HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED  327 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCcceehhhc---CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence            98 56777765544 579999998654 3445554   899999999999 56789999999999999997532      


Q ss_pred             EEEEEccCCCcEEEEEEecC
Q 022910          270 VVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       270 ~~~~~~~~~~~v~~i~~s~d  289 (290)
                      ++..+. ..+.|..|.|+|.
T Consensus       328 Pilay~-a~~EVNqi~Ws~~  346 (364)
T KOG0290|consen  328 PILAYT-AGGEVNQIQWSSS  346 (364)
T ss_pred             chhhhh-ccceeeeeeeccc
Confidence            233333 3678999999864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=3.4e-20  Score=152.12  Aligned_cols=189  Identities=21%  Similarity=0.373  Sum_probs=159.2

Q ss_pred             eeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC--------CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCe
Q 022910          101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST  172 (290)
Q Consensus       101 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~  172 (290)
                      .++..|...|+.+.|.|....|++++.+|+|.+|++..        -+++.+|.+|.++|.|+++.+++.++++|+.||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            35667889999999999999999999999999999932        2578899999999999999999999999999999


Q ss_pred             EEEEECCcc----------cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCC----------
Q 022910          173 VWMWNADRA----------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH----------  232 (290)
Q Consensus       173 i~i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------  232 (290)
                      |+.|++...          .....+.+|...++.+++++....|++++.||+++.|+.....+ .++...          
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd  446 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD  446 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence            999976522          23356778999999999999999999999999999998764433 111000          


Q ss_pred             ---------------------------------------CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 022910          233 ---------------------------------------PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS  273 (290)
Q Consensus       233 ---------------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  273 (290)
                                                             ......+..+.++|.+.+.+++..|+.|+++|..+++++..
T Consensus       447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s  526 (577)
T KOG0642|consen  447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS  526 (577)
T ss_pred             eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence                                                   00123467788999999999999999999999999999999


Q ss_pred             EccCCCcEEEEEEecCC
Q 022910          274 LVSHTDSIECIGFSRSE  290 (290)
Q Consensus       274 ~~~~~~~v~~i~~s~d~  290 (290)
                      ..+|...++++++.|+|
T Consensus       527 ~~a~~~svtslai~~ng  543 (577)
T KOG0642|consen  527 MVAHKDSVTSLAIDPNG  543 (577)
T ss_pred             eeeccceecceeecCCC
Confidence            99999999999999876

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4.1e-20  Score=143.15  Aligned_cols=197  Identities=17%  Similarity=0.264  Sum_probs=156.7

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC--CCCEEEEEeCCCcEEEEcCCCCceEEEE--ecCC-CCE
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQIWDPSSGNLKCTL--EGPG-GGV  152 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~-~~i  152 (290)
                      ..+|++...|.|++||..+++.+..++++...+..+.|..  ....+.+|+.||+|++||++.......+  ..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5788888999999999999999999999999999999976  4557999999999999999987655443  3333 467


Q ss_pred             EEEEEcCCCCEEEEeeC----CCeEEEEECCcccE-EEee-ecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCee
Q 022910          153 EWVSWHPRGHIVLAGSE----DSTVWMWNADRAAY-LNMF-SGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGEN  225 (290)
Q Consensus       153 ~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  225 (290)
                      .+++..-.++.+++|+.    +-.|.+||+|..+. ++.+ ..|...|++++|+| +.++|++|+.||.|.+||+.....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            77777767888888864    66799999998765 5544 45999999999999 678999999999999999976533


Q ss_pred             eEEEeCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910          226 IHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~  274 (290)
                      --.+...-.+.+.|.++.|..++ +.|.+-+..+...+|+++.+.....+
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            22222222267789999999866 45788888999999999887654443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.4e-20  Score=154.12  Aligned_cols=220  Identities=19%  Similarity=0.284  Sum_probs=168.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECC--CCCEEEEEeCCCc
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSM--DGQLLASGGLDGL  130 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~dg~  130 (290)
                      ....+.|.||++.|.|+.|+. ++.+|++|+.|-.+.|||.-..+++..+. +|...|.+++|-|  +.+.+++|+.|..
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             cchhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            456678999999999999999 88999999999999999999888777764 8999999999998  4568999999999


Q ss_pred             EEEEcCCCC----------ceEEEEecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCcccE----------EEeeec
Q 022910          131 VQIWDPSSG----------NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAY----------LNMFSG  189 (290)
Q Consensus       131 i~i~d~~~~----------~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~  189 (290)
                      |+++|+...          .....+..|...|..++..|++ +.+.+++.||+|+-||++....          +..+..
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~  198 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP  198 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence            999999842          3345566788889999999988 7899999999999999987421          111112


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCe------------------eeEEEeCCCC-c--------ccCeEE
Q 022910          190 HGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGE------------------NIHVIRGHPY-H--------TEGLTC  241 (290)
Q Consensus       190 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~------------------~~~~~~~~~~-~--------~~~v~~  241 (290)
                      .--...++.++| ...+|++|+.|-..++||.+...                  ++..+..... .        ...++-
T Consensus       199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~  278 (758)
T KOG1310|consen  199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY  278 (758)
T ss_pred             hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence            223568899999 56788999999999999953211                  1111111100 0        112577


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910          242 LTISADSTLALSGSKDGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  274 (290)
                      +.|+|+|.-|++.-..-.|+++|+..++....+
T Consensus       279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  279 VTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             EEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            899999987777666669999999887755443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=7.7e-19  Score=147.21  Aligned_cols=218  Identities=18%  Similarity=0.314  Sum_probs=170.1

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce----
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL----  141 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----  141 (290)
                      .|+.++|-|++..++++++  ..+.+||...|....++++|...|.|++|+.+|+.+++|+.|..|.+|+..-...    
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYS   91 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYS   91 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeec
Confidence            8999999996666666554  6899999999999999999999999999999999999999999999998542211    


Q ss_pred             ----EEEE---------------------------e--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE--EEe
Q 022910          142 ----KCTL---------------------------E--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNM  186 (290)
Q Consensus       142 ----~~~~---------------------------~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~  186 (290)
                          ++.+                           .  .....+.+.+|..+|.+|+.|-.+|+|.+-+-.....  +.+
T Consensus        92 H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R  171 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER  171 (1081)
T ss_pred             cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeC
Confidence                1100                           0  0123567778888899999999999999886543332  223


Q ss_pred             eecCCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910          187 FSGHGSSVTCGDFTPDG-----KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH  261 (290)
Q Consensus       187 ~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  261 (290)
                      ..+.+++|.+++|+|..     ..+++.....++.+|.+. |+.+..-+.   ..-...|+.+.++|.+++.|+.|+.+.
T Consensus       172 pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~---L~FdP~CisYf~NGEy~LiGGsdk~L~  247 (1081)
T KOG1538|consen  172 PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA---LNFDPCCISYFTNGEYILLGGSDKQLS  247 (1081)
T ss_pred             CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc---CCCCchhheeccCCcEEEEccCCCceE
Confidence            33578899999999943     567888888888888774 444433332   345567899999999999999999999


Q ss_pred             EEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          262 MVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       262 ~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +|- +.|-.+.++-.....|+.++..|++
T Consensus       248 ~fT-R~GvrLGTvg~~D~WIWtV~~~PNs  275 (1081)
T KOG1538|consen  248 LFT-RDGVRLGTVGEQDSWIWTVQAKPNS  275 (1081)
T ss_pred             EEe-ecCeEEeeccccceeEEEEEEccCC
Confidence            996 6788888887778899999999975

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=1.2e-19  Score=143.03  Aligned_cols=162  Identities=23%  Similarity=0.385  Sum_probs=137.4

Q ss_pred             eccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCC-------ceEEEEecCCCCEEEEEEcCC-CCEEEEeeCCCeE
Q 022910          103 IQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTV  173 (290)
Q Consensus       103 ~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i  173 (290)
                      +.+|+++|..++|+|- ...||+||.|.+|.||.+..+       +++..+.+|...|--++|||. .+.|++++.|.+|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            4689999999999994 558999999999999998654       456788899999999999996 4689999999999


Q ss_pred             EEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEE
Q 022910          174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS  253 (290)
Q Consensus       174 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  253 (290)
                      .+|++.+++.+.++. |...|+++.|+.+|.+|++.+.|..|||||.++++.+..-..|.+  .....+.|-.+|.++.|
T Consensus       157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG--~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG--AKPARAIFLASGKIFTT  233 (472)
T ss_pred             EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC--CCcceeEEeccCceeee
Confidence            999999999888888 999999999999999999999999999999999998877766432  23445567778886655


Q ss_pred             Ee---CCCcEEEEEcCC
Q 022910          254 GS---KDGSVHMVNITT  267 (290)
Q Consensus       254 ~~---~dg~i~~wd~~~  267 (290)
                      |-   ++.++-+||..+
T Consensus       234 Gfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNN  250 (472)
T ss_pred             ccccccccceeccCccc
Confidence            53   367899998654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.84  E-value=2.7e-18  Score=134.46  Aligned_cols=195  Identities=19%  Similarity=0.215  Sum_probs=157.7

Q ss_pred             CEEEEEECCCCCcEEEEecCC--CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           66 EVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      .|.-+-|+.   .++|..+.+  +.+++++++....+..+. ...+|.++.++  .+.|+++-.+ .|+|||+++.+++.
T Consensus        48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLh  120 (391)
T KOG2110|consen   48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLH  120 (391)
T ss_pred             EEEEeeccc---ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccceeeh
Confidence            455555654   355544433  458999999888888776 56789999994  4566666544 49999999999988


Q ss_pred             EEec---CCCCEEEEEEcCCCCEEEEee--CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCe-EEE
Q 022910          144 TLEG---PGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT-LRV  217 (290)
Q Consensus       144 ~~~~---~~~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i  217 (290)
                      ++..   +...+.++.+++.+.+++.-+  ..|.|.+||+.+.+++..+..|.+++.+++|+++|.+||+++..|+ |||
T Consensus       121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV  200 (391)
T KOG2110|consen  121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV  200 (391)
T ss_pred             hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence            7754   334566666666677888743  4689999999999999999999999999999999999999999886 789


Q ss_pred             EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910          218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                      |.+.+|+++..++... ....|.+++|+|++++|++.+..++|++|.+...
T Consensus       201 f~v~~G~kl~eFRRG~-~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  201 FSVPEGQKLYEFRRGT-YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EEcCCccEeeeeeCCc-eeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            9999999999998654 3677999999999999999999999999998653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=1.9e-19  Score=153.69  Aligned_cols=203  Identities=22%  Similarity=0.302  Sum_probs=159.6

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee--eee----eccccCCEEEEEECCCC--CEEEEEeCCCcEEEEc
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASE----IQGHKDSVSSLAFSMDG--QLLASGGLDGLVQIWD  135 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~----~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d  135 (290)
                      ..+|+|+.|+|.+++++|.|..+|.|.+||+..+..  ...    ...|..+++.+.|..+.  .-|++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            468999999999999999999999999999988654  222    23588999999997644  4499999999999998


Q ss_pred             CCCCc---------------------------------------------------------------eEEEEecCCCCE
Q 022910          136 PSSGN---------------------------------------------------------------LKCTLEGPGGGV  152 (290)
Q Consensus       136 ~~~~~---------------------------------------------------------------~~~~~~~~~~~i  152 (290)
                      ++.-.                                                               ....+..|.++|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            64110                                                               011223466789


Q ss_pred             EEEEEcCCCCEEEEeeCCCeEEEEECC-cccEEEeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCeeeEEEe
Q 022910          153 EWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIR  230 (290)
Q Consensus       153 ~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  230 (290)
                      +++.++|-+..++..+.|.+++||... ...++..+..+...+++++||| ....|+++..+|.|.+||+..........
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s  481 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS  481 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence            999999977766666669999999988 6677777777888899999999 55678889999999999997654322222


Q ss_pred             CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                       ........+.+.|++.|++|++|...|++++|++..
T Consensus       482 -~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  482 -QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             -ccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence             112456778889999999999999999999999853

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=6.2e-20  Score=150.01  Aligned_cols=193  Identities=18%  Similarity=0.306  Sum_probs=156.4

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEE
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW  157 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  157 (290)
                      ..|+.++.||.+.|.+ +.++....+..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|-+..++.....+|+|++|
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence            4677888999998887 45677777889999999999999999999999999999998 556655566666778999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCccc
Q 022910          158 HPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE  237 (290)
Q Consensus       158 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  237 (290)
                      .|+.+.++.+.. +.+.|=.+.....+-+.+.|.+-|.++.|+|..+++++|+.|-..+|||.. |..+..-..   |.-
T Consensus       154 ~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~---~ey  228 (737)
T KOG1524|consen  154 APNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA---EEY  228 (737)
T ss_pred             CCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh---hcc
Confidence            998876665543 678888888887788899999999999999999999999999999999986 444333333   888


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +|++++|.|+ ..++.++.. +.|           --+...+.|..++|||||
T Consensus       229 ~ITSva~npd-~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DG  268 (737)
T KOG1524|consen  229 AITSVAFNPE-KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADG  268 (737)
T ss_pred             ceeeeeeccc-cceeeeeee-eee-----------ecCCCccceEEEEEcCCC
Confidence            9999999999 566666543 344           112345789999999997

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=7.6e-19  Score=147.25  Aligned_cols=209  Identities=19%  Similarity=0.351  Sum_probs=165.3

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee--------e--e------------------
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS--------E--I------------------  103 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--------~--~------------------  103 (290)
                      ..+..+..++||++.|+|++|+. ++.++|+|+.|..|.+|.-.-...++        -  +                  
T Consensus        41 ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglW  119 (1081)
T KOG1538|consen   41 SDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLW  119 (1081)
T ss_pred             CCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhcccc
Confidence            35778899999999999999999 88999999999999999864311110        0  0                  


Q ss_pred             -------c--cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe---cCCCCEEEEEEcCCC-----CEEEE
Q 022910          104 -------Q--GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE---GPGGGVEWVSWHPRG-----HIVLA  166 (290)
Q Consensus       104 -------~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~-----~~l~~  166 (290)
                             .  ....+|.+++|..+|++|+.|-.+|+|.|-+-. ++....+.   +...+|.+++|+|..     ..+++
T Consensus       120 S~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV  198 (1081)
T KOG1538|consen  120 SPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV  198 (1081)
T ss_pred             ChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence                   0  123467788899999999999999999998643 44333333   366799999999953     47888


Q ss_pred             eeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC
Q 022910          167 GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (290)
Q Consensus       167 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (290)
                      .....++.+|.+. ++.+..-+...-...|+.+.|+|.+++.|+.|+.+.+|- +.|-.+.++..   ....|+.++..|
T Consensus       199 ~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~---~D~WIWtV~~~P  273 (1081)
T KOG1538|consen  199 ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGE---QDSWIWTVQAKP  273 (1081)
T ss_pred             EeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccc---cceeEEEEEEcc
Confidence            9999999999885 444544444556678999999999999999999999995 45666666665   678899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCC
Q 022910          247 DSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       247 ~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      ++++++.|+.||+|..|++-.
T Consensus       274 NsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  274 NSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             CCceEEEEEccCeeehhhhHH
Confidence            999999999999999999743

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.84  E-value=4.3e-18  Score=145.15  Aligned_cols=226  Identities=19%  Similarity=0.215  Sum_probs=158.2

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEec---CCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGG---GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDG  129 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg  129 (290)
                      +...+.+..+...+.+.+|+| ++..|+..+   ....|.+|++.+++.... ....+.+..+.|+|+|++|+.. +.+|
T Consensus       188 g~~~~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g  265 (429)
T PRK03629        188 GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTG  265 (429)
T ss_pred             CCCCEEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCC
Confidence            344455666778899999999 555554332   245799999988754332 2233345568999999988765 3344


Q ss_pred             --cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC-C--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCC
Q 022910          130 --LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-S--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       130 --~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  204 (290)
                        .|++||+.+++..... .+...+....|+|+|+.|+.++.. +  .|+++++.++... .+...........|+|+|+
T Consensus       266 ~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~  343 (429)
T PRK03629        266 SLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGK  343 (429)
T ss_pred             CcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCC
Confidence              5889999888765443 344567889999999988877654 3  4666677766543 3343444566789999999


Q ss_pred             EEEEEeCC---CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCc---EEEEEcCCCcEEEEEccCC
Q 022910          205 TICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS---VHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       205 ~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~~wd~~~~~~~~~~~~~~  278 (290)
                      +|+..+.+   ..|.+||+.++... .+...    .......|+|||++|+.++.++.   ++++++ +|+....+.+|.
T Consensus       344 ~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~----~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~  417 (429)
T PRK03629        344 FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT----FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD  417 (429)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeE-EeCCC----CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC
Confidence            98876543   35889999887643 33321    12345789999999999888764   677777 577778888888


Q ss_pred             CcEEEEEEecC
Q 022910          279 DSIECIGFSRS  289 (290)
Q Consensus       279 ~~v~~i~~s~d  289 (290)
                      +.+...+|+|-
T Consensus       418 ~~~~~p~Wsp~  428 (429)
T PRK03629        418 GQVKFPAWSPY  428 (429)
T ss_pred             CCcCCcccCCC
Confidence            89999999983

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=1.1e-18  Score=134.53  Aligned_cols=208  Identities=19%  Similarity=0.341  Sum_probs=160.9

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCe------------eeeeec-cccCCEEEEEEC-------CCCCEEEEEe
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGD------------WASEIQ-GHKDSVSSLAFS-------MDGQLLASGG  126 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~-~~~~~i~~~~~~-------~~~~~l~~~~  126 (290)
                      ...+.|+| ++..|++-+.|..+++|++...-            ....+. .....|...+|.       |+..++++.+
T Consensus        52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            45788999 77788888999999999985311            111111 134567777885       5677999999


Q ss_pred             CCCcEEEEcCCCCceEEEEecCC-----CCEEEEEEcCCCCEEEEeeCCCeEEEEEC-CcccEEEe-------eecCCCC
Q 022910          127 LDGLVQIWDPSSGNLKCTLEGPG-----GGVEWVSWHPRGHIVLAGSEDSTVWMWNA-DRAAYLNM-------FSGHGSS  193 (290)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~-------~~~~~~~  193 (290)
                      .+.-|++||.-+|+....+..-.     ....+++|+|+|.+|++|.. ..|+++|+ |.++....       -.+..+-
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            99999999999999888776522     25678999999999998876 78999999 55532211       1234677


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC-CcE
Q 022910          194 VTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITT-GKV  270 (290)
Q Consensus       194 i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~-~~~  270 (290)
                      |.+++|+| +...+++|+...++-||.-....++..+.+   |.+.|+.++|+++|+.|++|.. +-.|..||++. ..+
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg---h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG---HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc---cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence            89999999 556899999999999998888888888876   8999999999999999999876 67899999985 445


Q ss_pred             EEEEccCCC
Q 022910          271 VSSLVSHTD  279 (290)
Q Consensus       271 ~~~~~~~~~  279 (290)
                      +..+..|.+
T Consensus       287 v~~L~rhv~  295 (406)
T KOG2919|consen  287 VYALERHVG  295 (406)
T ss_pred             hhhhhhhcc
Confidence            566665543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.84  E-value=1.5e-17  Score=130.39  Aligned_cols=209  Identities=16%  Similarity=0.227  Sum_probs=153.7

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec---cccCCEEEEEECCCCCEEEEEe--CCCcEEEEcCCCC
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGG--LDGLVQIWDPSSG  139 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~  139 (290)
                      .+|.++.++.   +.|+++-. ..|+|||++..+++.++.   .+...+.++.+++.+.+++.-+  ..|.|.|||+.+-
T Consensus        88 t~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl  163 (391)
T KOG2110|consen   88 TSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL  163 (391)
T ss_pred             CceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence            4666777764   34444443 459999999999988875   3445566676777777888643  3699999999999


Q ss_pred             ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCe-EEEEECCcccEEEeeecC--CCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910          140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST-VWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDATLR  216 (290)
Q Consensus       140 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~  216 (290)
                      +.+..+..|.+++.+++|+++|.+||+++..|+ |||+.+..++.+..|+..  ...|.+++|+|++.+|++.+..++|+
T Consensus       164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVH  243 (391)
T KOG2110|consen  164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVH  243 (391)
T ss_pred             eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence            999999999999999999999999999999997 899999999999888743  34689999999999999999999999


Q ss_pred             EEcCCCCeee----------------------------------EEEeCCCCcccCe-EEEEEc--CCCCEEEEEeCCCc
Q 022910          217 VWNPKSGENI----------------------------------HVIRGHPYHTEGL-TCLTIS--ADSTLALSGSKDGS  259 (290)
Q Consensus       217 i~d~~~~~~~----------------------------------~~~~~~~~~~~~v-~~~~~~--~~~~~l~~~~~dg~  259 (290)
                      +|.+......                                  +.+.......+.. ..+.+.  +...++.+++.||.
T Consensus       244 iFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~  323 (391)
T KOG2110|consen  244 IFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGH  323 (391)
T ss_pred             EEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCe
Confidence            9987532100                                  0000000011111 223333  46788999999999


Q ss_pred             EEEEEcCC--CcEEEEEccC
Q 022910          260 VHMVNITT--GKVVSSLVSH  277 (290)
Q Consensus       260 i~~wd~~~--~~~~~~~~~~  277 (290)
                      ++.|.+..  |.....++.|
T Consensus       324 ~y~y~l~~~~gGec~lik~h  343 (391)
T KOG2110|consen  324 LYSYRLPPKEGGECALIKRH  343 (391)
T ss_pred             EEEEEcCCCCCceeEEEEee
Confidence            99998764  4444444433

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=1.2e-19  Score=150.06  Aligned_cols=205  Identities=19%  Similarity=0.196  Sum_probs=172.8

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecC---CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ++..-.|..+|..+.|+. .|.+|++...   ...|.|+++...+....|....+.|.++.|+|...+|++++. ..|+|
T Consensus       514 v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRi  591 (733)
T KOG0650|consen  514 VCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRI  591 (733)
T ss_pred             eEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEE
Confidence            677778999999999999 7778877644   357999999888777777667788999999999999988875 67999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      ||+..+.++..+......|..++.+|.|..|+.|+.++.+..+|+.-. ++.+++..|...+++++|++.-.+|++|+.|
T Consensus       592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD  671 (733)
T KOG0650|consen  592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD  671 (733)
T ss_pred             EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence            999998887777777778999999999999999999999999999754 6778888899999999999999999999999


Q ss_pred             CeEEEEc------CCCCeeeEEEeCCCCcccC----eEEEEEcCCCCEEEEEeCCCcEEEE
Q 022910          213 ATLRVWN------PKSGENIHVIRGHPYHTEG----LTCLTISADSTLALSGSKDGSVHMV  263 (290)
Q Consensus       213 g~i~i~d------~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~~w  263 (290)
                      |++.||-      +..+..+..++...+|...    |-.+.|+|...+|++++.||+|++|
T Consensus       672 gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  672 GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            9999983      3333344444444335444    8888999999999999999999998

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.2e-17  Score=124.15  Aligned_cols=200  Identities=18%  Similarity=0.269  Sum_probs=154.8

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee------eeee--cccc-----CCEEEEEECCCCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW------ASEI--QGHK-----DSVSSLAFSMDGQ  120 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~--~~~~-----~~i~~~~~~~~~~  120 (290)
                      ..++..+++|.++|+.++|+.   .+|++|+ ||.|+=|..+....      ....  .-|.     -.|++|...|..+
T Consensus        52 k~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en  127 (325)
T KOG0649|consen   52 KLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN  127 (325)
T ss_pred             CcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC
Confidence            445666699999999999984   3555655 59999998765321      1111  1122     3588999999888


Q ss_pred             EEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec----------C
Q 022910          121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG----------H  190 (290)
Q Consensus       121 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~  190 (290)
                      .++.++.|+.++-||+++|+...++++|...+.++.--.....+++|+.||++++||+++++.++.+..          .
T Consensus       128 Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~  207 (325)
T KOG0649|consen  128 SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW  207 (325)
T ss_pred             cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence            788888899999999999999999999999999999866677899999999999999999998876643          1


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       191 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      ...|.+++.+  ..+|++|+ ...+.+|.+++.++...+.    ....+..+.|..  ..+++++..+.|.-|.+.
T Consensus       208 g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfp----ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  208 GKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFP----IPARVHLVDFVD--DCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             CceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEe----cccceeEeeeec--ceEEEeccccceeeeeec
Confidence            3346666654  56788775 4569999999999988887    466788888854  467777777788888763

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.5e-19  Score=143.65  Aligned_cols=178  Identities=19%  Similarity=0.279  Sum_probs=141.2

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-
Q 022910          111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-  189 (290)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  189 (290)
                      .+++|+++|..+++++.||++|||+..+...+.....|.+.|.++.|+|+++.|++.+.+ ..+||+++++..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999988888888888899999999999999999999999 999999999976666553 


Q ss_pred             -CCCCeEEEEEcCCC---CEE--EEEeCCCeEEEEcCCCCee--eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910          190 -HGSSVTCGDFTPDG---KTI--CTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH  261 (290)
Q Consensus       190 -~~~~i~~~~~~~~~---~~l--~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  261 (290)
                       .......+.|+.++   .++  +....-+.|+.|++.....  .............|++++.+++|++++.|+.+|.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             23345667787765   332  3333455677766643322  111111111345799999999999999999999999


Q ss_pred             EEEcCCCcEEEEEc-cCCCcEEEEEEecC
Q 022910          262 MVNITTGKVVSSLV-SHTDSIECIGFSRS  289 (290)
Q Consensus       262 ~wd~~~~~~~~~~~-~~~~~v~~i~~s~d  289 (290)
                      +++..+.+.++-.+ .|...|+.+.|+||
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pd  335 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPD  335 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence            99999988887765 79999999999998

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.83  E-value=2.1e-20  Score=150.14  Aligned_cols=214  Identities=14%  Similarity=0.207  Sum_probs=184.0

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (290)
                      .-+.+.|+. ++..++.|+..|.|-.+|+.++++...+. -...|.++.|..+.++||++- ...++|||- .|..++.+
T Consensus       131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHCl  206 (545)
T KOG1272|consen  131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCL  206 (545)
T ss_pred             CCeeeeecC-CccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeeh
Confidence            446788888 77777788899999999999999988887 456789999998888888765 678999994 56667777


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee
Q 022910          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN  225 (290)
Q Consensus       146 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  225 (290)
                      +.+. .+..+.|-|..-+|++++..|.++.-|+.+++.+..+....+.+..|+-+|-...+-+|...|+|.+|......+
T Consensus       207 k~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  207 KRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             hhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence            7554 589999999999999999999999999999999999988889999999999888999999999999999998888


Q ss_pred             eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      +..+..   |.++|.++++.++|+|++|.+.|..++|||++....+.++.. .-+...++||.
T Consensus       286 LvKiLc---H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq  344 (545)
T KOG1272|consen  286 LVKILC---HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ  344 (545)
T ss_pred             HHHHHh---cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence            777766   899999999999999999999999999999999887777655 33455555554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1e-18  Score=138.03  Aligned_cols=234  Identities=17%  Similarity=0.272  Sum_probs=177.0

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC------Ceeeeeec-cccCCEEEEEECCCCCEEEEEe
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------GDWASEIQ-GHKDSVSSLAFSMDGQLLASGG  126 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~  126 (290)
                      +-+.+-+.+|.+.|.++.|+. ++.+|++|+.|..+++|.+..      .+++.... .|...|.|++|...++++++|.
T Consensus        46 ~~~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~  124 (609)
T KOG4227|consen   46 PFCQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE  124 (609)
T ss_pred             chhhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence            445566789999999999999 688999999999999999864      23444333 4668999999999999999999


Q ss_pred             CCCcEEEEcCCCCceEEEEecC--CCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-EEE--eeecCCCCeEEEEEcC
Q 022910          127 LDGLVQIWDPSSGNLKCTLEGP--GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLN--MFSGHGSSVTCGDFTP  201 (290)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~--~~~~~~~~i~~~~~~~  201 (290)
                      .+++|.+.|+++.+.+..+...  .+.|..+..+|..+.|++.+.++.|.+||.+..+ ...  ...........+.|+|
T Consensus       125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence            9999999999999988877642  3589999999999999999999999999998765 221  1223455678888999


Q ss_pred             -CCCEEEEEeCCCeEEEEcCCCCeee------------------------------------------------EEEeCC
Q 022910          202 -DGKTICTGSDDATLRVWNPKSGENI------------------------------------------------HVIRGH  232 (290)
Q Consensus       202 -~~~~l~~~~~dg~i~i~d~~~~~~~------------------------------------------------~~~~~~  232 (290)
                       ...+|++.+..+-+.+||.+.....                                                ..++..
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D  284 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD  284 (609)
T ss_pred             CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence             5677888888888999998743210                                                000000


Q ss_pred             CC-----cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-----------------------cEEEEEccCCCcEEEE
Q 022910          233 PY-----HTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-----------------------KVVSSLVSHTDSIECI  284 (290)
Q Consensus       233 ~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-----------------------~~~~~~~~~~~~v~~i  284 (290)
                      ..     ....+.+++|..+ ..+++|+.+-.|++|.+...                       +.+..+++|..-+..+
T Consensus       285 ~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV  363 (609)
T KOG4227|consen  285 HNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV  363 (609)
T ss_pred             CCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence            00     1123556666544 34889999999999998531                       2456778999999999


Q ss_pred             EEecC
Q 022910          285 GFSRS  289 (290)
Q Consensus       285 ~~s~d  289 (290)
                      .|+|.
T Consensus       364 RF~~H  368 (609)
T KOG4227|consen  364 RFSQH  368 (609)
T ss_pred             eecCC
Confidence            99874

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.83  E-value=8.1e-20  Score=152.18  Aligned_cols=203  Identities=18%  Similarity=0.257  Sum_probs=155.2

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-------eeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcC
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDP  136 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~  136 (290)
                      ..|+.+.|.|.+...||+++.||.|++|.+..+       .....+..|...|+.+.|+|- .+.|++++.|-+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            368999999999999999999999999999764       345567889999999999994 568999999999999999


Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-EEEeeec-CCCCeEEEEEcCCCCEEEEEeCC--
Q 022910          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSG-HGSSVTCGDFTPDGKTICTGSDD--  212 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d--  212 (290)
                      .+++....+.+|...|..++|+|+|+.+++.+.||+|++|.-+++. +++.-++ ....-..|.|.-+|+++++.+-|  
T Consensus       708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~  787 (1012)
T KOG1445|consen  708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS  787 (1012)
T ss_pred             hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence            9999999999999999999999999999999999999999988764 3333322 12233557788899999887655  


Q ss_pred             --CeEEEEcCCCCe--eeEEEeCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc
Q 022910          213 --ATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGK  269 (290)
Q Consensus       213 --g~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~  269 (290)
                        .+|.+||..+..  .+.+....  ....+---.+.+| +-++++|-.|..|++|.+-...
T Consensus       788 SeRQv~~Y~Aq~l~~~pl~t~~lD--vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  788 SERQVQMYDAQTLDLRPLYTQVLD--VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             chhhhhhhhhhhccCCcceeeeec--ccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence              468899876543  22222111  0111111123444 4467788889999999986543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=9.5e-18  Score=143.59  Aligned_cols=225  Identities=19%  Similarity=0.235  Sum_probs=157.2

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecC---CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEE-EeCCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDG  129 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg  129 (290)
                      ....+.+..|...+.+.+|+| ++..|+..+.   ...|++|++.+++... +..+.+...++.|+|+|++|+. .+.+|
T Consensus       193 g~~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        193 GYNPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             CCCceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCC
Confidence            444566777888999999999 5555555442   3469999998776533 3334445567899999997764 45555


Q ss_pred             --cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-CC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCC
Q 022910          130 --LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       130 --~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  204 (290)
                        .|++|++.+++.. .+..+.......+|+|+++.|+.++. .|  .|+++++.+++..+ +..........+|+|+|+
T Consensus       271 ~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~  348 (433)
T PRK04922        271 NPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGK  348 (433)
T ss_pred             CceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCC
Confidence              5999999888754 44445445567899999998887764 34  47778887765433 322334455789999999


Q ss_pred             EEEEEeCCC---eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEEccCC
Q 022910          205 TICTGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       205 ~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~  278 (290)
                      +|+..+.++   .|.+||+.+++.. .+..    ........|+|+|++|+..+.+   +.|+++++. +.....+..+.
T Consensus       349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~----~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~  422 (433)
T PRK04922        349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLTP----GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSAD  422 (433)
T ss_pred             EEEEEECCCCceeEEEEECCCCCeE-ECCC----CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCC
Confidence            998765443   6999999887654 3332    2234467899999988776653   468888884 55667777667


Q ss_pred             CcEEEEEEec
Q 022910          279 DSIECIGFSR  288 (290)
Q Consensus       279 ~~v~~i~~s~  288 (290)
                      +.+...+|+|
T Consensus       423 g~~~~p~wsp  432 (433)
T PRK04922        423 GEVREPAWSP  432 (433)
T ss_pred             CCCCCCccCC
Confidence            7888999998

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.82  E-value=1.6e-18  Score=131.82  Aligned_cols=199  Identities=19%  Similarity=0.270  Sum_probs=154.6

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---eeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCC
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPS  137 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~  137 (290)
                      .+..++++..|+..+.++|.+++-|-+..|||++++.   ....+-.|...|..++|...+. .||+.+.||++++||++
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            3567999999999899999999999999999999863   3556778999999999998654 79999999999999998


Q ss_pred             CCceEEEEe---cCCCCEEEEEEcCC-CCEEEEeeCC-CeEEEEECCcc-cEEEeeecCCCCeEEEEEcC-CCCEEEEEe
Q 022910          138 SGNLKCTLE---GPGGGVEWVSWHPR-GHIVLAGSED-STVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGS  210 (290)
Q Consensus       138 ~~~~~~~~~---~~~~~i~~i~~~~~-~~~l~~~~~d-g~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~  210 (290)
                      ..+.-..+.   ....+..-++|+++ -+++|+-..| ..|.|.|+|.. .++.++.+|.+.|.+++|.| ....|.+++
T Consensus       228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence            775544332   22457888999885 4577765554 46999999975 57889999999999999999 557889999


Q ss_pred             CCCeEEEEcCCCCee---eEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 022910          211 DDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHM  262 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~  262 (290)
                      .|.++.+||+.+.-.   ...+.... ....|+.+.|++ .+..++.+.. +.+.+
T Consensus       308 DD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  308 DDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             CcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            999999999975332   01111111 467899999997 5667777654 34433

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.81  E-value=9.1e-19  Score=143.18  Aligned_cols=138  Identities=25%  Similarity=0.422  Sum_probs=120.5

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--------------C--------------eeeeeeccccCCEEEEEE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------------G--------------DWASEIQGHKDSVSSLAF  115 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------------~--------------~~~~~~~~~~~~i~~~~~  115 (290)
                      +..|+|+.|-|.+..+++++-.+|.+++|+...              +              .++..+....+.|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            368999999997778888888999999997631              0              011112223457889999


Q ss_pred             CCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeE
Q 022910          116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT  195 (290)
Q Consensus       116 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  195 (290)
                      +|+|++||+.+.||.++||+..+.+++..++..-+...|++|+|||++|++|+.|--|.||.+...+.+.+-++|++.|.
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs  378 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS  378 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence            99999999999999999999999999888888888899999999999999999999999999999999999999999999


Q ss_pred             EEEEcC
Q 022910          196 CGDFTP  201 (290)
Q Consensus       196 ~~~~~~  201 (290)
                      .++|.|
T Consensus       379 ~VaFDp  384 (636)
T KOG2394|consen  379 VVAFDP  384 (636)
T ss_pred             eEeecc
Confidence            999987

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=9.6e-19  Score=143.13  Aligned_cols=219  Identities=17%  Similarity=0.275  Sum_probs=163.5

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEE-EEECC-------CCCEEEEEeCCCcEEE
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS-LAFSM-------DGQLLASGGLDGLVQI  133 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~-~~~~~-------~~~~l~~~~~dg~i~i  133 (290)
                      .|...|.|+.|+. ....+.+ +.|..+.+|.-.+......+.....-+.. +-.-+       ....|+.++.||.+.|
T Consensus        12 r~~e~vc~v~w~~-~eei~~~-~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   12 RNSEKVCCVDWSS-NEEIYFV-SDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             ccceeEEeecccc-cceEEEe-ccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence            5667778999987 4445544 45666666654443322222211111111 11111       2347888899999999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  213 (290)
                      .+ +.++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.- ++....++.....+|+|++|.|+.+.++-+ ..+
T Consensus        90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~  166 (737)
T KOG1524|consen   90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGG  166 (737)
T ss_pred             ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe-cCC
Confidence            87 556777788899999999999999999999999999999984 555555555567899999999987666554 346


Q ss_pred             eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      .+.|=-+.....+-..+.   |.+-|-++.|++...++++|+.|-..++||. -|..+..-..|.-+|++++|.|+
T Consensus       167 h~~IKpL~~n~k~i~WkA---HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  167 HISIKPLAANSKIIRWRA---HDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             eEEEeecccccceeEEec---cCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc
Confidence            677777766666666666   8899999999999999999999999999996 57888888889999999999997

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.81  E-value=1.5e-18  Score=133.48  Aligned_cols=186  Identities=18%  Similarity=0.259  Sum_probs=152.1

Q ss_pred             cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc---eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc-
Q 022910          105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-  180 (290)
Q Consensus       105 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-  180 (290)
                      ....+|+|.+|+++...+|++.....|.||.....+   ...+++.|...|+.++|+|..+.|++++.|..-++|.... 
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            345789999999999999999999999999987665   5678889999999999999999999999999999999843 


Q ss_pred             c--cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeC-CCCcccCeEEEEEcCCCCEEEEEeCC
Q 022910          181 A--AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG-HPYHTEGLTCLTISADSTLALSGSKD  257 (290)
Q Consensus       181 ~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d  257 (290)
                      +  ++...+..++...+++.|+|.++.|++|+.-..|.||-+...+.-..-+. ...+.+.|+++.|+|++-+|++|+.|
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence            3  44555666889999999999999999999999999998765443211110 11267889999999999999999999


Q ss_pred             CcEEEEEcC------------------CCcEEEEEccCCCcEEEEEEecCC
Q 022910          258 GSVHMVNIT------------------TGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       258 g~i~~wd~~------------------~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +..|++..-                  -|.++..+....+.|..+.|+|+|
T Consensus       168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG  218 (361)
T KOG1523|consen  168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG  218 (361)
T ss_pred             cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC
Confidence            999999741                  133455554556899999999986

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=8.3e-17  Score=133.38  Aligned_cols=230  Identities=13%  Similarity=0.185  Sum_probs=151.2

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEE-EEecCCCcEEEEEccC-Cee--eeeeccccCCEEEEEECCCCCEEEEEeC-CCc
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLV-ATGGGDDKGFFWRINQ-GDW--ASEIQGHKDSVSSLAFSMDGQLLASGGL-DGL  130 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~  130 (290)
                      .+..+. +.+....++++| ++++| +++..++.|.+|++.. ++.  +.... .......++|+|++++|++++. ++.
T Consensus        27 ~~~~~~-~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~  103 (330)
T PRK11028         27 LLQVVD-VPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANC  103 (330)
T ss_pred             eeeEEe-cCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCe
Confidence            334443 345677899999 55554 4455688999999973 332  22222 2335678999999998888764 889


Q ss_pred             EEEEcCCCCc----eEEEEecCCCCEEEEEEcCCCCEEEEee-CCCeEEEEECCcccEEEe-----ee-cCCCCeEEEEE
Q 022910          131 VQIWDPSSGN----LKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNM-----FS-GHGSSVTCGDF  199 (290)
Q Consensus       131 i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-----~~-~~~~~i~~~~~  199 (290)
                      |.+|++.+..    .+..+. +.....+++++|+++++++++ .++.|.+||+.+...+..     .. ........++|
T Consensus       104 v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~  182 (330)
T PRK11028        104 VSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF  182 (330)
T ss_pred             EEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence            9999986432    222222 223467789999999886555 568999999976332211     11 12345678999


Q ss_pred             cCCCCEEEEEeC-CCeEEEEcCCC--C--eeeEEEeCCCC---cccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCc-
Q 022910          200 TPDGKTICTGSD-DATLRVWNPKS--G--ENIHVIRGHPY---HTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGK-  269 (290)
Q Consensus       200 ~~~~~~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~-  269 (290)
                      +|++++++++.. ++.|.+|++..  +  +.+..+...+.   .......+.++|++++|+++.. ++.|.+|++.... 
T Consensus       183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~  262 (330)
T PRK11028        183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS  262 (330)
T ss_pred             CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence            999999988776 89999999973  2  22333332111   1122346889999999999864 7899999986432 


Q ss_pred             ---EEEEEccCCCcEEEEEEecCC
Q 022910          270 ---VVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       270 ---~~~~~~~~~~~v~~i~~s~d~  290 (290)
                         .+..+.. ....+.++|+|||
T Consensus       263 ~~~~~~~~~~-~~~p~~~~~~~dg  285 (330)
T PRK11028        263 VLSFEGHQPT-ETQPRGFNIDHSG  285 (330)
T ss_pred             eEEEeEEEec-cccCCceEECCCC
Confidence               2333332 2355678898886

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=2.4e-17  Score=140.72  Aligned_cols=225  Identities=20%  Similarity=0.208  Sum_probs=152.2

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecC---CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEE-EeCCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDG  129 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg  129 (290)
                      ....+.+..+...+.+.+|+| +++.|+..+.   ...|.+|++.+++... +....+.+....|+|+|+.|+. .+.+|
T Consensus       185 G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g  262 (427)
T PRK02889        185 GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDG  262 (427)
T ss_pred             CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCC
Confidence            344455667888999999999 5555554432   2459999998876543 3334455678999999998764 56677


Q ss_pred             cEEEEc--CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-CCeEEEE--ECCcccEEEeeecCCCCeEEEEEcCCCC
Q 022910          130 LVQIWD--PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMW--NADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       130 ~i~i~d--~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~  204 (290)
                      ...||.  +..+. ...+..+.+......|+|+|+.|+..+. .|...+|  ++.++.... +...........|+|+|+
T Consensus       263 ~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~  340 (427)
T PRK02889        263 NSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGK  340 (427)
T ss_pred             CceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCC
Confidence            766654  44444 4445445555667899999998887654 3554555  555554322 222233345678999999


Q ss_pred             EEEEEeCCC---eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccCC
Q 022910          205 TICTGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       205 ~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~  278 (290)
                      +|+..+.++   .|.+||+.+++... +..    ........|+|+|++|+.++.++   .+++.++ +++....+..+.
T Consensus       341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~----~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~  414 (427)
T PRK02889        341 LLAYISRVGGAFKLYVQDLATGQVTA-LTD----TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG  414 (427)
T ss_pred             EEEEEEccCCcEEEEEEECCCCCeEE-ccC----CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence            998776554   69999998876533 322    12345779999999888877544   4666676 577777777777


Q ss_pred             CcEEEEEEec
Q 022910          279 DSIECIGFSR  288 (290)
Q Consensus       279 ~~v~~i~~s~  288 (290)
                      +.+...+|+|
T Consensus       415 g~~~~p~wsp  424 (427)
T PRK02889        415 GDVREPSWGP  424 (427)
T ss_pred             CCCCCCccCC
Confidence            8889999998

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=1.8e-17  Score=130.80  Aligned_cols=225  Identities=13%  Similarity=0.166  Sum_probs=174.9

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe----eeeeeccccCCEEEEEECCCCCE-EEEEeCC--
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDGQL-LASGGLD--  128 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d--  128 (290)
                      .+....+.+++|..++...  + .|++|-.+|.+.+|....+.    .+..+..+ ..+..|.-++...+ +++|+..  
T Consensus        97 ~~~~~~l~~~~I~gl~~~d--g-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~  172 (412)
T KOG3881|consen   97 DAKTVSLGTKSIKGLKLAD--G-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENI  172 (412)
T ss_pred             cccccccccccccchhhcC--C-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcc
Confidence            3446667788888888763  3 45577888999999988433    22233322 45666766766554 5558887  


Q ss_pred             CcEEEEcCCCCceEEEEecCC---------CCEEEEEEcCC--CCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEE
Q 022910          129 GLVQIWDPSSGNLKCTLEGPG---------GGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTC  196 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~---------~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~  196 (290)
                      ..+.|||+...+.+.+-+...         -.++.+.|-+.  ...|++++.-+.+++||.+.+ +++..+.-...++++
T Consensus       173 n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~  252 (412)
T KOG3881|consen  173 NELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISS  252 (412)
T ss_pred             cceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCccee
Confidence            889999999886554433211         24677888887  789999999999999999875 578888888899999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEE-EeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       197 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      +...|.++++++|..-|.+..||++.++.... +.+   ..+.|+++..+|.+++|++++-|..|||+|+.+.+++....
T Consensus       253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg---~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG---ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY  329 (412)
T ss_pred             eeecCCCcEEEEecccchhheecccCceeeccccCC---ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence            99999999999999999999999999988766 555   67889999999999999999999999999999988776654


Q ss_pred             cCCCcEEEEEEec
Q 022910          276 SHTDSIECIGFSR  288 (290)
Q Consensus       276 ~~~~~v~~i~~s~  288 (290)
                      . ...+++|.+.+
T Consensus       330 v-Ks~lt~il~~~  341 (412)
T KOG3881|consen  330 V-KSRLTFILLRD  341 (412)
T ss_pred             h-hccccEEEecC
Confidence            3 45566666644

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.80  E-value=3.7e-18  Score=139.64  Aligned_cols=198  Identities=20%  Similarity=0.302  Sum_probs=147.2

Q ss_pred             CcEEEEEccCCeeee-----eeccccCCEEEEEEC-----CCCCEEEEEeCCCcEEEEcCCCCceEEEEe----cCCCCE
Q 022910           87 DKGFFWRINQGDWAS-----EIQGHKDSVSSLAFS-----MDGQLLASGGLDGLVQIWDPSSGNLKCTLE----GPGGGV  152 (290)
Q Consensus        87 g~i~iw~~~~~~~~~-----~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~i  152 (290)
                      ..+++|+...+....     .+.... ...|-.|+     |.+--+++|-..|.|.+.+....+....+.    .....+
T Consensus       144 ~~lyv~~~~g~~~~~~pi~k~~y~gt-~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsv  222 (636)
T KOG2394|consen  144 RELYVYSYRGAADLSKPIDKREYKGT-SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSV  222 (636)
T ss_pred             CeEEEEEccCcchhccchhhhcccCC-CCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccce
Confidence            568888877432111     111112 22344452     445568888888999999876643322221    133679


Q ss_pred             EEEEEcCCC-CEEEEeeCCCeEEEEECCcc----------------------------cEEEeeecCCCCeEEEEEcCCC
Q 022910          153 EWVSWHPRG-HIVLAGSEDSTVWMWNADRA----------------------------AYLNMFSGHGSSVTCGDFTPDG  203 (290)
Q Consensus       153 ~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~  203 (290)
                      +|+.|-|.+ ..++++-.+|.+++||..-.                            .++..+..-.+.|..++|+|+|
T Consensus       223 T~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG  302 (636)
T KOG2394|consen  223 TCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG  302 (636)
T ss_pred             EEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC
Confidence            999999854 46777778999999976321                            0111222234578889999999


Q ss_pred             CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEE
Q 022910          204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC  283 (290)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~  283 (290)
                      ++||+.+.||.+||||..+.+.+..++.   .-+...|++|+|||+||++|+.|..|.||.+..++++..-++|+.+|+.
T Consensus       303 ~~LA~VSqDGfLRvF~fdt~eLlg~mkS---YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~  379 (636)
T KOG2394|consen  303 KYLATVSQDGFLRIFDFDTQELLGVMKS---YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV  379 (636)
T ss_pred             ceEEEEecCceEEEeeccHHHHHHHHHh---hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence            9999999999999999998887776665   5678999999999999999999999999999999999999999999999


Q ss_pred             EEEec
Q 022910          284 IGFSR  288 (290)
Q Consensus       284 i~~s~  288 (290)
                      ++|.|
T Consensus       380 VaFDp  384 (636)
T KOG2394|consen  380 VAFDP  384 (636)
T ss_pred             Eeecc
Confidence            99986

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=4.8e-18  Score=127.54  Aligned_cols=206  Identities=20%  Similarity=0.300  Sum_probs=156.0

Q ss_pred             Cceeeec-cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee--------------e----------------
Q 022910           55 DSTHIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--------------I----------------  103 (290)
Q Consensus        55 ~~~~~~~-~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------------~----------------  103 (290)
                      .....++ .|...|+.+.-.| + ..+.+-+.|+.+.+|++.-...+..              +                
T Consensus        46 r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~r  123 (323)
T KOG0322|consen   46 RDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSR  123 (323)
T ss_pred             ccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCc
Confidence            3444555 5778899999888 4 3466788999999999864221110              0                


Q ss_pred             -----------------------ccccCCEEEEEECC-CCC--EEEEEeCCCcEEEEcCCCCc----------eEEEEec
Q 022910          104 -----------------------QGHKDSVSSLAFSM-DGQ--LLASGGLDGLVQIWDPSSGN----------LKCTLEG  147 (290)
Q Consensus       104 -----------------------~~~~~~i~~~~~~~-~~~--~l~~~~~dg~i~i~d~~~~~----------~~~~~~~  147 (290)
                                             .+..+.+.|..+.. .+.  ++++|..+|.+.+||+.++.          .......
T Consensus       124 gsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as  203 (323)
T KOG0322|consen  124 GSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS  203 (323)
T ss_pred             ccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhh
Confidence                                   01233455555432 233  57778889999999999973          3334456


Q ss_pred             CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc----cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910          148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (290)
Q Consensus       148 ~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  223 (290)
                      |..++.++.|.+.-..=++|+.+..+.+|.+...    +...........|..+..-|+++.+++++.|+.||||..++.
T Consensus       204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl  283 (323)
T KOG0322|consen  204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL  283 (323)
T ss_pred             ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence            8889999999987777788888888999988643    111222334456888899999999999999999999999999


Q ss_pred             eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      +++..++-   |...|++++|+|+..++|+++.|++|.+|++
T Consensus       284 ~pLAVLky---Hsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  284 NPLAVLKY---HSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             Cchhhhhh---hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99888876   8899999999999999999999999999986

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=4e-17  Score=140.59  Aligned_cols=222  Identities=17%  Similarity=0.255  Sum_probs=181.4

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCC--cEEEEecCCCcEEEEEccCCeeeeee---------------------------
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDA--TLVATGGGDDKGFFWRINQGDWASEI---------------------------  103 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~---------------------------  103 (290)
                      ...+++.+.+|..+++.+.+.|...  .++.+++.+|.|++|+...+.+++++                           
T Consensus        46 Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~  125 (792)
T KOG1963|consen   46 TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVE  125 (792)
T ss_pred             hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecc
Confidence            4667888999999999999998655  46779999999999998765443332                           


Q ss_pred             ----------------------------------------------------------------------------cccc
Q 022910          104 ----------------------------------------------------------------------------QGHK  107 (290)
Q Consensus       104 ----------------------------------------------------------------------------~~~~  107 (290)
                                                                                                  ..|.
T Consensus       126 ~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Ht  205 (792)
T KOG1963|consen  126 DYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHT  205 (792)
T ss_pred             cceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhc
Confidence                                                                                        1255


Q ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEcCCC--C--ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE
Q 022910          108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--G--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY  183 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~  183 (290)
                      -.+++.+++|+++++|++..||.|.+|.--.  +  .....+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+++ 
T Consensus       206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-  284 (792)
T KOG1963|consen  206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-  284 (792)
T ss_pred             ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-
Confidence            6689999999999999999999999996433  1  2345667788899999999999999999999999999999988 


Q ss_pred             EEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCc--------ccCeEEEEEcCCCCEEEEEe
Q 022910          184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH--------TEGLTCLTISADSTLALSGS  255 (290)
Q Consensus       184 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~  255 (290)
                      .+-+....++|..+.++|++.+.+....|..|.+..+.+......+.+....        .+-.+.++++|..+.++-.+
T Consensus       285 kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~  364 (792)
T KOG1963|consen  285 KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG  364 (792)
T ss_pred             cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC
Confidence            5555667899999999999999999999999999988766555555444322        44577889999777888888


Q ss_pred             CCCcEEEEEcCCCcEEEEEc
Q 022910          256 KDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       256 ~dg~i~~wd~~~~~~~~~~~  275 (290)
                      ..|.|.+||+.+.+.+..+.
T Consensus       365 ~~g~vQ~ydl~td~~i~~~~  384 (792)
T KOG1963|consen  365 HPGHVQFYDLYTDSTIYKLQ  384 (792)
T ss_pred             CCceEEEEeccccceeeeEE
Confidence            99999999999988777665

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=1.6e-16  Score=136.19  Aligned_cols=225  Identities=15%  Similarity=0.174  Sum_probs=157.8

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEec---CCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEE-EEeCC
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGG---GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLD  128 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d  128 (290)
                      .+...+.+..|...+.+.+|+| +++.|+..+   .+..|.+|++.+++.. .+..+.+.+...+|+|+|+.|+ +.+.+
T Consensus       190 dg~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~  267 (435)
T PRK05137        190 DGANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQG  267 (435)
T ss_pred             CCCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecC
Confidence            3455667888899999999999 555555443   2468999999887653 3444666778899999999776 44555


Q ss_pred             Cc--EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-C--CeEEEEECCcccEEEeeecCCCCeEEEEEcCCC
Q 022910          129 GL--VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG  203 (290)
Q Consensus       129 g~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  203 (290)
                      +.  |++|++.++... .+..+.+......|+|+++.|+..+. +  ..|++|++.++... .+......+....|+|+|
T Consensus       268 g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG  345 (435)
T PRK05137        268 GNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRG  345 (435)
T ss_pred             CCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCC
Confidence            54  777898877654 45545555678999999998887764 3  36889998766543 333344556778899999


Q ss_pred             CEEEEEeCC---CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCcEEEEE
Q 022910          204 KTICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD------GSVHMVNITTGKVVSSL  274 (290)
Q Consensus       204 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~  274 (290)
                      ++|+..+.+   ..|.+||+.++.. ..+..    ...+..+.|+|+|++|+..+.+      ..++++++..+.. ..+
T Consensus       346 ~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~----~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l  419 (435)
T PRK05137        346 DLIAFTKQGGGQFSIGVMKPDGSGE-RILTS----GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REV  419 (435)
T ss_pred             CEEEEEEcCCCceEEEEEECCCCce-EeccC----CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEc
Confidence            999876543   3688899865543 33332    2246678999999988775543      3588888866554 455


Q ss_pred             ccCCCcEEEEEEec
Q 022910          275 VSHTDSIECIGFSR  288 (290)
Q Consensus       275 ~~~~~~v~~i~~s~  288 (290)
                      .. .+.+...+|+|
T Consensus       420 ~~-~~~~~~p~Wsp  432 (435)
T PRK05137        420 PT-PGDASDPAWSP  432 (435)
T ss_pred             cC-CCCccCcccCC
Confidence            53 45678888987

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.9e-18  Score=132.94  Aligned_cols=168  Identities=25%  Similarity=0.446  Sum_probs=132.6

Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcC--CCCEEEEeeCCCeEEEEECCcccEEEee--ecCC-CCe
Q 022910          120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMF--SGHG-SSV  194 (290)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~-~~i  194 (290)
                      ..+|++...|.|++||..+++.+..++++...+..+.|..  ....+.+++.||+|++||+|......++  ..++ .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4688888899999999999999999999999999999977  5678999999999999999987655443  3333 466


Q ss_pred             EEEEEcCCCCEEEEEeC----CCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 022910          195 TCGDFTPDGKTICTGSD----DATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       195 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                      .+++..-.++.+++|+.    +..|.+||.|..+. +..+...  |...|++++|+| +.++|++|+.||.|.+||++..
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS--H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES--HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh--ccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            77777667788888753    67899999998776 5555433  889999999999 7789999999999999999754


Q ss_pred             c---EEEEEccCCCcEEEEEEecC
Q 022910          269 K---VVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       269 ~---~~~~~~~~~~~v~~i~~s~d  289 (290)
                      .   .+...-.|...|-++.|+.+
T Consensus       199 ~EeDaL~~viN~~sSI~~igw~~~  222 (376)
T KOG1188|consen  199 NEEDALLHVINHGSSIHLIGWLSK  222 (376)
T ss_pred             cchhhHHHhhcccceeeeeeeecC
Confidence            2   12222234566777777654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.4e-16  Score=123.44  Aligned_cols=203  Identities=18%  Similarity=0.332  Sum_probs=144.7

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----ee----------eeeeccccCCEEEEEECCCCCEEEEEeC-
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DW----------ASEIQGHKDSVSSLAFSMDGQLLASGGL-  127 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  127 (290)
                      .+..|+|++|-|.++..|+.|+.. -|.||.....    +.          +...++| .+|++|.|.++|..+++++. 
T Consensus       139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g  216 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG  216 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence            456899999999888899888864 5889987531    11          1222344 68999999999999999876 


Q ss_pred             CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE
Q 022910          128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (290)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  207 (290)
                      +..|.|||..++..+.......+.++-+.|+|++.+|++++-|+..++|...............+.|...+|+|.|++|+
T Consensus       217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL  296 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL  296 (445)
T ss_pred             cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence            67899999999987766655566799999999999999999999999996654433333333455899999999998876


Q ss_pred             EEeCCCeEEEEcCCCCe------------eeEEE---------eCCCCcccCeEEEEEcCCCCEEEEEeCCC--------
Q 022910          208 TGSDDATLRVWNPKSGE------------NIHVI---------RGHPYHTEGLTCLTISADSTLALSGSKDG--------  258 (290)
Q Consensus       208 ~~~~dg~i~i~d~~~~~------------~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------  258 (290)
                      ..+.. .-++|.+.-..            ....+         .+.....+.+.+++|.|.|.+||+.-..+        
T Consensus       297 f~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~  375 (445)
T KOG2139|consen  297 FACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKL  375 (445)
T ss_pred             EEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhh
Confidence            54432 22344332110            00000         11112356789999999999999876543        


Q ss_pred             cEEEEEcCCC
Q 022910          259 SVHMVNITTG  268 (290)
Q Consensus       259 ~i~~wd~~~~  268 (290)
                      .|.+||.+..
T Consensus       376 ~i~~fdtr~s  385 (445)
T KOG2139|consen  376 HISRFDTRKS  385 (445)
T ss_pred             hhhhhccccc
Confidence            4777887643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=2.8e-16  Score=130.20  Aligned_cols=219  Identities=11%  Similarity=0.153  Sum_probs=142.7

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCe----eeeeeccccCCEEEEEECCCCCEEEEEe-CCCcEEEEcCCCCc
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSGN  140 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  140 (290)
                      ....++|+|++..++++...++.|.+|++.+..    .+..+. +.....+++++|+++++++++ .++.|.+|++.+..
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence            457899999554455555568999999997432    222222 234467889999999886554 56999999997643


Q ss_pred             eEE-----EEe-cCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCc--c--cEEEeeecC------CCCeEEEEEcCCC
Q 022910          141 LKC-----TLE-GPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADR--A--AYLNMFSGH------GSSVTCGDFTPDG  203 (290)
Q Consensus       141 ~~~-----~~~-~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~------~~~i~~~~~~~~~  203 (290)
                      .+.     ... ........++|+|++++++++.. ++.|.+|++..  +  +.+..+...      ......+.++|++
T Consensus       160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            221     111 12334678999999999988876 89999999973  2  223333221      1223468899999


Q ss_pred             CEEEEEeC-CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC--CCc--EEEEEccC
Q 022910          204 KTICTGSD-DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNIT--TGK--VVSSLVSH  277 (290)
Q Consensus       204 ~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~--~~~--~~~~~~~~  277 (290)
                      ++|+++.. ++.|.+|++........+............+.++|+|++|+++.. +++|.+|++.  ++.  .+..+.. 
T Consensus       240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~-  318 (330)
T PRK11028        240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV-  318 (330)
T ss_pred             CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc-
Confidence            99998854 789999998654321122111111234567899999999998776 8899999874  343  2344433 


Q ss_pred             CCcEEEEEE
Q 022910          278 TDSIECIGF  286 (290)
Q Consensus       278 ~~~v~~i~~  286 (290)
                      .....+++|
T Consensus       319 g~~P~~~~~  327 (330)
T PRK11028        319 GQGPMWVSV  327 (330)
T ss_pred             CCCceEEEE
Confidence            334445544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=7.6e-17  Score=138.91  Aligned_cols=227  Identities=21%  Similarity=0.312  Sum_probs=168.2

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--C--eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--G--DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (290)
                      .|...++|.+++| .++++|+|..||.|.+|.--.  .  .....+.-|...|.+++|+++|.+|++|+..|.+.+|.+.
T Consensus       203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            4777799999999 889999999999999997543  1  2234566788999999999999999999999999999999


Q ss_pred             CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-----------CCCCeEEEEEcCCCCEE
Q 022910          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-----------HGSSVTCGDFTPDGKTI  206 (290)
Q Consensus       138 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l  206 (290)
                      +++ .+-+..-.++|..+.++|++.+.+....|..|.+....+......+.+           ..+-.+.++++|..+.+
T Consensus       282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~  360 (792)
T KOG1963|consen  282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL  360 (792)
T ss_pred             CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence            998 555666778999999999999999999999999998765544333332           23345677888876777


Q ss_pred             EEEeCCCeEEEEcCCCCeeeEEEeCC------------------------------------------------------
Q 022910          207 CTGSDDATLRVWNPKSGENIHVIRGH------------------------------------------------------  232 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------------------------------------  232 (290)
                      +-.+..|.|.+||+.+...+..+...                                                      
T Consensus       361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~  440 (792)
T KOG1963|consen  361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN  440 (792)
T ss_pred             eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence            77788888888887654332221100                                                      


Q ss_pred             -----------CCcccCeEEEEEcC-CC-CEEEEEeCCCcEEEEEcCCCc----------EEEEEccCCCcEEEEEEecC
Q 022910          233 -----------PYHTEGLTCLTISA-DS-TLALSGSKDGSVHMVNITTGK----------VVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       233 -----------~~~~~~v~~~~~~~-~~-~~l~~~~~dg~i~~wd~~~~~----------~~~~~~~~~~~v~~i~~s~d  289 (290)
                                 ..|...+...++.+ .. ...++++.||.+++|-+...+          +...-.-|..+++.++|+.|
T Consensus       441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d  520 (792)
T KOG1963|consen  441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD  520 (792)
T ss_pred             cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence                       01444444444443 22 378899999999999984322          22221237789999999988


Q ss_pred             C
Q 022910          290 E  290 (290)
Q Consensus       290 ~  290 (290)
                      |
T Consensus       521 G  521 (792)
T KOG1963|consen  521 G  521 (792)
T ss_pred             C
Confidence            7

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.78  E-value=1.1e-16  Score=121.38  Aligned_cols=156  Identities=16%  Similarity=0.270  Sum_probs=114.9

Q ss_pred             EEEEECCCCCEEEEEeC----------CCcEEEEcCCC-CceEEEEec-CCCCEEEEEEcCCCCEEEEe--eCCCeEEEE
Q 022910          111 SSLAFSMDGQLLASGGL----------DGLVQIWDPSS-GNLKCTLEG-PGGGVEWVSWHPRGHIVLAG--SEDSTVWMW  176 (290)
Q Consensus       111 ~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~-~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~--~~dg~i~i~  176 (290)
                      ..+.|+|+|++|++-..          -+...+|-++. +.....+.. ..++|.+++|+|+++.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999987665433          13345555522 233444433 34579999999999987654  456799999


Q ss_pred             ECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEE
Q 022910          177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS  253 (290)
Q Consensus       177 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  253 (290)
                      |++ .+.+..+.  ...+..+.|+|+|++|++++.   .|.|.+||.++.+.+....    + ..++.++|+|+|++|++
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~-~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----H-SDATDVEWSPDGRYLAT  160 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----c-CcEEEEEEcCCCCEEEE
Confidence            997 55566554  567789999999999998864   4679999999888776654    3 34789999999999999


Q ss_pred             EeC------CCcEEEEEcCCCcEEEEEc
Q 022910          254 GSK------DGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       254 ~~~------dg~i~~wd~~~~~~~~~~~  275 (290)
                      ++.      |+.++||+. .|+++....
T Consensus       161 a~t~~r~~~dng~~Iw~~-~G~~l~~~~  187 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSF-QGRLLYKKP  187 (194)
T ss_pred             EEeccceeccccEEEEEe-cCeEeEecc
Confidence            875      788999998 477766543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=4.6e-17  Score=134.34  Aligned_cols=224  Identities=17%  Similarity=0.195  Sum_probs=170.0

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee----------------------------cccc------
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI----------------------------QGHK------  107 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----------------------------~~~~------  107 (290)
                      .|...-+.|..+|++.+++|+|..-..|++||+.+..+...-                            .-|.      
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            467788899999988899999999999999999764321110                            0110      


Q ss_pred             -----CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc
Q 022910          108 -----DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA  182 (290)
Q Consensus       108 -----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  182 (290)
                           ..-..|+++.-..-|++++....|+-++++.|..+..+....+.++++..++...+|++|+.+|.|..||.+...
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence                 111233443222235555556779999999999999998888899999999999999999999999999999876


Q ss_pred             EEEeeec------CCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC--CC
Q 022910          183 YLNMFSG------HGS-----SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD--ST  249 (290)
Q Consensus       183 ~~~~~~~------~~~-----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~  249 (290)
                      .+..+..      |.+     .|+++.|+.+|-.+++|+..|.|.|||+++.+++..-..  ....+|..+.|.+.  +.
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh--~~e~pi~~l~~~~~~~q~  286 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH--GYELPIKKLDWQDTDQQN  286 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc--CCccceeeecccccCCCc
Confidence            5554432      222     499999999999999999999999999999887654432  25678999999874  34


Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       250 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      .|++. ....++|||-.+|+....+.. ...+..+++-|+
T Consensus       287 ~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~  324 (703)
T KOG2321|consen  287 KVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPG  324 (703)
T ss_pred             eEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecC
Confidence            45444 456899999999999998886 345888887775

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=7.4e-17  Score=141.58  Aligned_cols=223  Identities=17%  Similarity=0.282  Sum_probs=160.2

Q ss_pred             cCEEEEEECC-CCCcEEEEecCCCcEEEEEccC-----Ceeeeeec-------cccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           65 DEVYSVACSP-TDATLVATGGGDDKGFFWRINQ-----GDWASEIQ-------GHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        65 ~~v~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      ..|+.+.+-. ++..++.+|+.||.|+||+--.     .+.+....       +..+.-.-+.|.....+|++++.-..|
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            3577777654 3556888999999999997432     23333221       111222446787777777777778999


Q ss_pred             EEEcCCCCceEEEEecC-CCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCccc---EEEeeecCCCC--eEEEEEcCCCC
Q 022910          132 QIWDPSSGNLKCTLEGP-GGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSS--VTCGDFTPDGK  204 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~-~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~--i~~~~~~~~~~  204 (290)
                      +|||.........+... ...++++.-+. .|+.+++|..||.|++||.|...   .+...+.|+..  |..+.+.++|-
T Consensus      1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred             EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence            99999988877766533 33566665443 47899999999999999998653   46667778777  99999998765


Q ss_pred             E-EEEEeCCCeEEEEcCCCCeeeEE--EeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC----
Q 022910          205 T-ICTGSDDATLRVWNPKSGENIHV--IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH----  277 (290)
Q Consensus       205 ~-l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----  277 (290)
                      . |++|+.+|.|++||++.......  +..+....+..+++..++....+|+|+. +.|+||++. |+.+..++.+    
T Consensus      1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFM 1347 (1387)
T ss_pred             cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccc
Confidence            4 99999999999999998532222  2221112345999999999999999998 999999984 5555444422    


Q ss_pred             ---CCcEEEEEEecC
Q 022910          278 ---TDSIECIGFSRS  289 (290)
Q Consensus       278 ---~~~v~~i~~s~d  289 (290)
                         .+.+.|++|||-
T Consensus      1348 ~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPH 1362 (1387)
T ss_pred             cCcCCCcceeeecch
Confidence               357899999984

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.7e-16  Score=123.22  Aligned_cols=193  Identities=19%  Similarity=0.277  Sum_probs=142.5

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCCCC--
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSG--  139 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~--  139 (290)
                      .-.+..++|++ .-..+|++..|-.|++|+-.. +....++ ..+..|+|++|-|.+. .|++|+..| |.||.....  
T Consensus        98 ~~dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln  174 (445)
T KOG2139|consen   98 EIDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN  174 (445)
T ss_pred             hcceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence            45678899999 667788999999999999776 4444444 3456899999999654 677777655 999976421  


Q ss_pred             --ce--------EE--EEecCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEE
Q 022910          140 --NL--------KC--TLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (290)
Q Consensus       140 --~~--------~~--~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  206 (290)
                        ..        .+  ..++| .+|++|.|.++|..+++++. +..|.|||..++..+.......+.++-+.|||++.+|
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l  253 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL  253 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence              11        11  22333 58999999999999999886 5679999999988776665556778899999999999


Q ss_pred             EEEeCCCeEEEEcCC-CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          207 CTGSDDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      ++++-|+..++|... +....+-..    ..+.|...+|+|+|++|+..+.. .-++|.+
T Consensus       254 faAt~davfrlw~e~q~wt~erw~l----gsgrvqtacWspcGsfLLf~~sg-sp~lysl  308 (445)
T KOG2139|consen  254 FAATCDAVFRLWQENQSWTKERWIL----GSGRVQTACWSPCGSFLLFACSG-SPRLYSL  308 (445)
T ss_pred             EEecccceeeeehhcccceecceec----cCCceeeeeecCCCCEEEEEEcC-CceEEEE
Confidence            999999999999544 333322222    34589999999999877655432 3344544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=9.5e-17  Score=137.22  Aligned_cols=193  Identities=18%  Similarity=0.179  Sum_probs=134.3

Q ss_pred             CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCC
Q 022910           86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH  162 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~  162 (290)
                      +..|.+||..... ...+..+...+..++|+|+|++|+.++.+   ..|++||+.+++.... ....+....++|+|+|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~  260 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS  260 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence            4689999986554 45566678889999999999999887654   4699999988764322 22223345789999999


Q ss_pred             EEEEee-CCCeE--EEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEcCCCC-eeeEEEeCCCCccc
Q 022910          163 IVLAGS-EDSTV--WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSG-ENIHVIRGHPYHTE  237 (290)
Q Consensus       163 ~l~~~~-~dg~i--~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~~~  237 (290)
                      .|+++. .+|.+  ++||+.++. ...+..+...+....|+|+|+.|+.++ .+|..+||++... .....+ .   +..
T Consensus       261 ~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~---~~~  335 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G---GRG  335 (429)
T ss_pred             EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c---CCC
Confidence            888765 57764  455776665 345555666788999999999877554 5777888876432 222222 2   222


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                        ....|+|+|++|+.++.++ +.+||+.+++.......+  ...+++|+|||
T Consensus       336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG  383 (429)
T PRK01742        336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNG  383 (429)
T ss_pred             --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCC
Confidence              3578999999998887754 666999888764332222  34567899986

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.3e-15  Score=130.57  Aligned_cols=194  Identities=15%  Similarity=0.086  Sum_probs=138.9

Q ss_pred             cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC---CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 022910           88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV  164 (290)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  164 (290)
                      .|.++|... .....+..+...+.+.+|+|+|+.|+..+.   +..|++|++.+++.. .+....+.+...+|+|+|+.|
T Consensus       183 ~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        183 RLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             EEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            688888754 444556667889999999999999888764   468999999888754 344455667889999999977


Q ss_pred             EE-eeCCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEcCCCCeeeEEEeCCCCcccC
Q 022910          165 LA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEG  238 (290)
Q Consensus       165 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~  238 (290)
                      +. .+.++  .|++||+.++.. ..+..+........|+|+|+.|+..+. +|  .|++||+..+... .+..   ....
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~---~~~~  335 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF---GGGR  335 (435)
T ss_pred             EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec---CCCc
Confidence            64 44444  488889987765 445555566778899999998887663 33  6888898766543 3332   2344


Q ss_pred             eEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          239 LTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       239 v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +....|+|+|++|+..+.+   ..|.+|++.++. ...+.. ...+..+.|+|||
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG  388 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNG  388 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCC
Confidence            5678899999999877643   368889986554 333432 3357788999986

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=9.2e-18  Score=137.83  Aligned_cols=167  Identities=26%  Similarity=0.422  Sum_probs=135.6

Q ss_pred             eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe-cCCCCEEEEEEcC--CCCEEEEeeCCCeEEE
Q 022910           99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHP--RGHIVLAGSEDSTVWM  175 (290)
Q Consensus        99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i  175 (290)
                      ....+.+|++.|.|+.|+.+|.+|++||.|-.+.|||.-..+++..+. +|.+.|.++.|-|  +.+.+++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            345678999999999999999999999999999999999888887764 7999999999998  4568999999999999


Q ss_pred             EECCcc----------cEEEeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEcCCCCeee-------EEEeCCCCccc
Q 022910          176 WNADRA----------AYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENI-------HVIRGHPYHTE  237 (290)
Q Consensus       176 ~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~  237 (290)
                      +|+...          .....+..|...|..|+..|++ ..+.+++.||+|+-||++....-       ..+......--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            999852          3445566788899999999977 88999999999999999863211       11111111223


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 022910          238 GLTCLTISA-DSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       238 ~v~~~~~~~-~~~~l~~~~~dg~i~~wd~  265 (290)
                      ...++.++| +..+|++|+.|-..++||.
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            467899999 5678999999999999994

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=5e-17  Score=128.59  Aligned_cols=167  Identities=14%  Similarity=0.224  Sum_probs=138.7

Q ss_pred             eeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC------CCceEEEEec-CCCCEEEEEEcCCCCEEEEeeCCCeE
Q 022910          101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS------SGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTV  173 (290)
Q Consensus       101 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~------~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i  173 (290)
                      +.+.+|.+.|.++.|+.++++|++|+.|..+++|++.      +.+++..... |...|.|++|....+.+++|..+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            3456899999999999999999999999999999975      3466655544 44789999999999999999999999


Q ss_pred             EEEECCcccEEEeeec--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcC-CCC
Q 022910          174 WMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISA-DST  249 (290)
Q Consensus       174 ~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~  249 (290)
                      ...|+++.+.+..+..  ..+.|+.+..+|..+.|++.+.++.|.+||.+... ....+.. .........+-|+| ...
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~-AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP-ANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee-cCCCccceeeeecCCCce
Confidence            9999999998887763  23589999999999999999999999999998765 3322222 22566788899999 567


Q ss_pred             EEEEEeCCCcEEEEEcCCC
Q 022910          250 LALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       250 ~l~~~~~dg~i~~wd~~~~  268 (290)
                      +|++.+..+-+.+||.+..
T Consensus       209 Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             eEEeccccCCCCceeeccc
Confidence            8889999999999998754

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=2.1e-16  Score=124.79  Aligned_cols=179  Identities=16%  Similarity=0.236  Sum_probs=150.4

Q ss_pred             cCEEEEEECCCCCcEEEEecCC--CcEEEEEccCCeeeeeeccc---------cCCEEEEEECCC--CCEEEEEeCCCcE
Q 022910           65 DEVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGH---------KDSVSSLAFSMD--GQLLASGGLDGLV  131 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~---------~~~i~~~~~~~~--~~~l~~~~~dg~i  131 (290)
                      ..+..+.-++..+.++|+|+..  ..+.|||+.+.+.+.+-+.-         .-.++++.|.+.  ...||+++.-+.+
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv  228 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV  228 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence            4566666677778899999998  88999999988766654321         124578888877  7799999999999


Q ss_pred             EEEcCCCC-ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEe-eecCCCCeEEEEEcCCCCEEEEE
Q 022910          132 QIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTG  209 (290)
Q Consensus       132 ~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~  209 (290)
                      ++||...+ +++..+.....+++++...|.++.+++|..-|.+..||+++++.... +.+..+.|++|..+|...+++++
T Consensus       229 R~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~  308 (412)
T KOG3881|consen  229 RLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC  308 (412)
T ss_pred             EEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEee
Confidence            99999876 56778887888999999999999999999999999999999988776 88899999999999999999999


Q ss_pred             eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC
Q 022910          210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD  247 (290)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  247 (290)
                      +-|..|||+|+.+.+.+....    ..+.++++.+.++
T Consensus       309 GLDRyvRIhD~ktrkll~kvY----vKs~lt~il~~~~  342 (412)
T KOG3881|consen  309 GLDRYVRIHDIKTRKLLHKVY----VKSRLTFILLRDD  342 (412)
T ss_pred             ccceeEEEeecccchhhhhhh----hhccccEEEecCC
Confidence            999999999999977665554    4566778877653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=1.4e-18  Score=139.74  Aligned_cols=213  Identities=19%  Similarity=0.273  Sum_probs=167.4

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE  146 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  146 (290)
                      |..+.|.. ...+||++. ...++|||-. |..++.++.| ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+.
T Consensus       173 v~Dv~~LH-neq~~AVAQ-K~y~yvYD~~-GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~  248 (545)
T KOG1272|consen  173 VRDVTFLH-NEQFFAVAQ-KKYVYVYDNN-GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR  248 (545)
T ss_pred             hhhhhhhc-chHHHHhhh-hceEEEecCC-CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH
Confidence            44444444 455666665 4789999954 5666667745 468999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeee
Q 022910          147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI  226 (290)
Q Consensus       147 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  226 (290)
                      ...+.+..|+-+|-+..+-+|...|+|.+|......++..+..|.++|.+|++.++|+|++|++.|..++|||+++...+
T Consensus       249 t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  249 TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CC--CcEEEEEccC--CCcEEEEEEecC
Q 022910          227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI-TT--GKVVSSLVSH--TDSIECIGFSRS  289 (290)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~-~~--~~~~~~~~~~--~~~v~~i~~s~d  289 (290)
                      .++..    ..+...+++|..| +||. +....|.+|.= -.  +..-..+..|  .++|..+.|.|-
T Consensus       329 ~t~~t----p~~a~~ls~Sqkg-lLA~-~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~  390 (545)
T KOG1272|consen  329 HTYRT----PHPASNLSLSQKG-LLAL-SYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY  390 (545)
T ss_pred             ceeec----CCCcccccccccc-ceee-ecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH
Confidence            77664    3456778888654 4444 44558899952 12  1111111122  347777777763

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.74  E-value=1e-15  Score=116.13  Aligned_cols=156  Identities=17%  Similarity=0.338  Sum_probs=113.4

Q ss_pred             EEEEECCCCCcEEEEecC---------CCcEEEEEccC-Ceeeeeecc-ccCCEEEEEECCCCCEEEEE--eCCCcEEEE
Q 022910           68 YSVACSPTDATLVATGGG---------DDKGFFWRINQ-GDWASEIQG-HKDSVSSLAFSMDGQLLASG--GLDGLVQIW  134 (290)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~  134 (290)
                      ..+.|+|.+..+++....         -+...+|.+.. ......+.- ..++|.+++|+|+++.||+.  ...+.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            467899966566655541         23455666633 233444432 34579999999999987655  356799999


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC---CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC
Q 022910          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (290)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  211 (290)
                      |++ ++.+..+.  ...+..+.|+|+|++|++++.   .|.|.+||+++.+.+.... | ..++.++|+|+|++|+++..
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence            996 56665554  456889999999999999874   4679999999888887765 3 34789999999999998764


Q ss_pred             ------CCeEEEEcCCCCeeeEEE
Q 022910          212 ------DATLRVWNPKSGENIHVI  229 (290)
Q Consensus       212 ------dg~i~i~d~~~~~~~~~~  229 (290)
                            |..++||+.. |+.+...
T Consensus       164 ~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             ccceeccccEEEEEec-CeEeEec
Confidence                  6778999984 6555443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=2.8e-15  Score=115.58  Aligned_cols=176  Identities=14%  Similarity=0.283  Sum_probs=139.8

Q ss_pred             CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC-CCceEEEEecCC--CCEEEEEEcCCCCE
Q 022910           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-SGNLKCTLEGPG--GGVEWVSWHPRGHI  163 (290)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~--~~i~~i~~~~~~~~  163 (290)
                      ..|.|||=...+++..+. ...+|.++.+.++  .|++.- .+.|+||... ..+.+..+....  ..+.+++-+....+
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            469999977777777777 7789999999654  566655 5789999987 445555554322  23555544444455


Q ss_pred             EEE-eeCCCeEEEEECCcccE--EEeeecCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEcCCCCeeeEEEeCCCCcccCe
Q 022910          164 VLA-GSEDSTVWMWNADRAAY--LNMFSGHGSSVTCGDFTPDGKTICTGSDDAT-LRVWNPKSGENIHVIRGHPYHTEGL  239 (290)
Q Consensus       164 l~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~v  239 (290)
                      ||. |-.-|.|.|-|+...+.  ...+.+|.+.|.|++++-+|..+|+++..|+ |||||..++.++..++... ....|
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~i  229 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADI  229 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheE
Confidence            665 44579999999987665  4778899999999999999999999999996 8999999999999887544 45679


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          240 TCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       240 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      .+++|+|+..+|++++.-|+|+++.++.
T Consensus       230 y~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  230 YCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            9999999999999999999999999865

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=7.2e-16  Score=137.28  Aligned_cols=225  Identities=15%  Similarity=0.167  Sum_probs=168.5

Q ss_pred             CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-------eeeeeeccccCCEEEEEECCCCCEE
Q 022910           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDGQLL  122 (290)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l  122 (290)
                      ....+..+..+..|+..|..++.++..+.+|++|+.||+|++|++...       +...++.....++.++.+.+.+..+
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            455677888999999999999999867799999999999999998752       2223344456789999999999999


Q ss_pred             EEEeCCCcEEEEcCCCCceE-------EEEecC-CCCEE-EEEEcC--CCCEEEEeeCCCeEEEEECCcccEEEeee--c
Q 022910          123 ASGGLDGLVQIWDPSSGNLK-------CTLEGP-GGGVE-WVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFS--G  189 (290)
Q Consensus       123 ~~~~~dg~i~i~d~~~~~~~-------~~~~~~-~~~i~-~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~  189 (290)
                      |+++.||.|++.++......       .....+ .+.+. .-+|..  ....++.+...+.|..||+++.....+++  .
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence            99999999999998763111       111111 12233 333322  22378888889999999999876554443  3


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC---CCEEEEEe--CCCcEEEEE
Q 022910          190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD---STLALSGS--KDGSVHMVN  264 (290)
Q Consensus       190 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--~dg~i~~wd  264 (290)
                      ..+.|++++.+|.++++++|+..|.+.+||+|=+.++....-.  +..++..+..+|-   ....++++  ..+.|.+|+
T Consensus      1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P--~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP--ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc--ccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            4678999999999999999999999999999987776666532  4577888888872   24555444  467899999


Q ss_pred             cCCCcEEEEEcc
Q 022910          265 ITTGKVVSSLVS  276 (290)
Q Consensus       265 ~~~~~~~~~~~~  276 (290)
                      +.+|.+-..+..
T Consensus      1272 ~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1272 METGLRQTVLWA 1283 (1431)
T ss_pred             cccCcceEEEEc
Confidence            999877666654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=5.3e-15  Score=126.97  Aligned_cols=226  Identities=15%  Similarity=0.193  Sum_probs=151.2

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCC--CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEE-EeCCC-
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDG-  129 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg-  129 (290)
                      ....+.+..+...+...+|+|++..++++...+  ..|.+|++.+++... +....+.+....|+|+|++|+. .+.+| 
T Consensus       188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~  266 (430)
T PRK00178        188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGN  266 (430)
T ss_pred             CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCC
Confidence            334566667788899999999544444444333  368899998876433 3323345567899999998774 44444 


Q ss_pred             -cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-C--CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE
Q 022910          130 -LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       130 -~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  205 (290)
                       .|++||+.+++.. .+..+........|+|+++.|+..+. +  ..|+++++.+++..+. ...........|+|++++
T Consensus       267 ~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~  344 (430)
T PRK00178        267 PEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKT  344 (430)
T ss_pred             ceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence             6888899887654 34444455667899999998776654 3  3688888887764332 222233445789999999


Q ss_pred             EEEEeCC-C--eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEEccCCC
Q 022910          206 ICTGSDD-A--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTD  279 (290)
Q Consensus       206 l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~  279 (290)
                      |+..+.. +  .|.+||+.+++. ..+...    .......|+|+|++|+..+.+   ..|+++++. +.....+..+.+
T Consensus       345 i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~----~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g  418 (430)
T PRK00178        345 LVMVHRQDGNFHVAAQDLQRGSV-RILTDT----SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQG  418 (430)
T ss_pred             EEEEEccCCceEEEEEECCCCCE-EEccCC----CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCC
Confidence            9876643 3  588999988764 333321    112245899999988877654   357777874 555556666667


Q ss_pred             cEEEEEEec
Q 022910          280 SIECIGFSR  288 (290)
Q Consensus       280 ~v~~i~~s~  288 (290)
                      .+...+|+|
T Consensus       419 ~~~~p~ws~  427 (430)
T PRK00178        419 EVREPSWSP  427 (430)
T ss_pred             CcCCCccCC
Confidence            788889987

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.73  E-value=4e-15  Score=127.38  Aligned_cols=223  Identities=19%  Similarity=0.262  Sum_probs=153.5

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCC---CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCC-
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGD---DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDG-  129 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg-  129 (290)
                      ...+.+..+...+...+|+| +++.|+.+...   ..|++|++.+++.... ..+...+.+++|+|+++.|+.. +.++ 
T Consensus       180 ~~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~  257 (417)
T TIGR02800       180 ANPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGN  257 (417)
T ss_pred             CCCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCC
Confidence            34566666777899999999 55555554432   4799999988765433 3355567789999999977654 4443 


Q ss_pred             -cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC-C--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE
Q 022910          130 -LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-S--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       130 -~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  205 (290)
                       .|++|++.+++.. .+..+........|+|+++.|+.++.. +  .|+++++.+++.. .+..+...+..+.|+|++++
T Consensus       258 ~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~  335 (417)
T TIGR02800       258 PDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDL  335 (417)
T ss_pred             ccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCE
Confidence             5889999877644 333344445577899999988776543 3  6888898877643 34445566778899999999


Q ss_pred             EEEEeCCC---eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccCCC
Q 022910          206 ICTGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTD  279 (290)
Q Consensus       206 l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~  279 (290)
                      |+.++.++   .|.+||+.++.. ..+..    ........|+|++++|+..+.++   .+++.+. +++....+..+.+
T Consensus       336 i~~~~~~~~~~~i~~~d~~~~~~-~~l~~----~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g  409 (417)
T TIGR02800       336 IAFVHREGGGFNIAVMDLDGGGE-RVLTD----TGLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNG  409 (417)
T ss_pred             EEEEEccCCceEEEEEeCCCCCe-EEccC----CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCC
Confidence            99888776   899999987543 33332    11234568999999888877654   4555554 5666677766666


Q ss_pred             cEEEEEEe
Q 022910          280 SIECIGFS  287 (290)
Q Consensus       280 ~v~~i~~s  287 (290)
                      .+..++|+
T Consensus       410 ~~~~~~ws  417 (417)
T TIGR02800       410 DVREPAWS  417 (417)
T ss_pred             CcCCCCCC
Confidence            77777774

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.1e-14  Score=123.94  Aligned_cols=227  Identities=15%  Similarity=0.150  Sum_probs=146.4

Q ss_pred             eeeeccCCcCEEEEEECCCCCc--EEEEecCCC--cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC-CC--
Q 022910           57 THIFSGHSDEVYSVACSPTDAT--LVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DG--  129 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~--~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--  129 (290)
                      .+.+......+..-+|+|++..  ++++...+|  .|.+.++..++... +....+.....+|+|+|++|+..+. .|  
T Consensus       177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~  255 (428)
T PRK01029        177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNP  255 (428)
T ss_pred             ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCc
Confidence            4455556667788899995544  333444444  57777887765433 2224445567899999998887653 22  


Q ss_pred             --cEEEEcCCCC---ceEEEEecCCCCEEEEEEcCCCCEEEEee-CCCe--EEEEECCc-ccEEEeeecCCCCeEEEEEc
Q 022910          130 --LVQIWDPSSG---NLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDST--VWMWNADR-AAYLNMFSGHGSSVTCGDFT  200 (290)
Q Consensus       130 --~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~~~~~~~i~~~~~~  200 (290)
                        .+.+|++..+   +.........+.....+|+|+|+.|+..+ .+|.  |+++++.. +.....+......+....|+
T Consensus       256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS  335 (428)
T PRK01029        256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS  335 (428)
T ss_pred             ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence              3444676653   33333333333446789999999877765 4564  55555542 23344455455567788999


Q ss_pred             CCCCEEEEEeCC---CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcEEEEE
Q 022910          201 PDGKTICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       201 ~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~  274 (290)
                      |+|+.|+..+..   ..|.+||+.+++... +..   ....+....|+|+|+.|+....   ...|+++++.+++.....
T Consensus       336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt  411 (428)
T PRK01029        336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTT---SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV  411 (428)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccC---CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            999988866543   479999998887643 322   2234667899999998875433   357999999877754443


Q ss_pred             ccCCCcEEEEEEecC
Q 022910          275 VSHTDSIECIGFSRS  289 (290)
Q Consensus       275 ~~~~~~v~~i~~s~d  289 (290)
                       ...+.+...+|+|-
T Consensus       412 -~~~g~~~~p~Ws~~  425 (428)
T PRK01029        412 -IGSGEKRFPSWGAF  425 (428)
T ss_pred             -cCCCcccCceecCC
Confidence             34567788899884

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.73  E-value=1.9e-15  Score=129.51  Aligned_cols=202  Identities=17%  Similarity=0.199  Sum_probs=148.5

Q ss_pred             CcEEEEEccCC-eeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCce--EE----EEecCCCCEEEEEEc
Q 022910           87 DKGFFWRINQG-DWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL--KC----TLEGPGGGVEWVSWH  158 (290)
Q Consensus        87 g~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--~~----~~~~~~~~i~~i~~~  158 (290)
                      +.+.+|++... .+...+. ....|+|++|+|. ..+++.|+.+|.|.+||+..+..  ..    ....|..++..+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            47999999876 3333444 6678999999994 55788888999999999988765  22    223477899999997


Q ss_pred             CCCC--EEEEeeCCCeEEEEECCcccEE------Eeee------cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCC
Q 022910          159 PRGH--IVLAGSEDSTVWMWNADRAAYL------NMFS------GHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSG  223 (290)
Q Consensus       159 ~~~~--~l~~~~~dg~i~i~d~~~~~~~------~~~~------~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~  223 (290)
                      .+..  -|++++.||.|..|+++.....      ....      .....+++++|.+ +...|++|+..|.|..=+....
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            6544  4999999999999998754321      0111      1234688999998 6678999999999877433322


Q ss_pred             eee-----EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCcEEEEEccCCCcEEEEEEecC
Q 022910          224 ENI-----HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-TGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       224 ~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      +..     .....+..|.++|+++.++|=+..++..+.|.++++|... ...++..+..+...|++++|||-
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT  452 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence            211     1123444588999999999955444444449999999988 77888888888888999999984

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=2.3e-15  Score=128.57  Aligned_cols=195  Identities=23%  Similarity=0.272  Sum_probs=130.8

Q ss_pred             CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 022910           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI  163 (290)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~  163 (290)
                      ..|.++|.. +.....+..+...+.+.+|+|+|+.|+..+..   ..|++||+.+++... +....+.+....|+|+|+.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            356666663 44444455577889999999999998887643   459999999887643 3333455678999999998


Q ss_pred             EEE-eeCCCeEEE--EECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEE--cCCCCeeeEEEeCCCCccc
Q 022910          164 VLA-GSEDSTVWM--WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVW--NPKSGENIHVIRGHPYHTE  237 (290)
Q Consensus       164 l~~-~~~dg~i~i--~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~~~  237 (290)
                      |+. .+.+|...+  +|+..+. ...+..+........|+|+|+.|+..+. .|...+|  ++.++.. ..+..   ...
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~---~g~  328 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTF---TGS  328 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEec---CCC
Confidence            874 566776555  4555444 4455545555677889999998876554 4555555  4444443 22221   122


Q ss_pred             CeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ......|+|+|++|+..+.++   .|++||+.+++... +.. ........|+|||
T Consensus       329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg  382 (427)
T PRK02889        329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNG  382 (427)
T ss_pred             CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCC
Confidence            334578999999998776654   69999998877543 332 2345678899986

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=2.2e-15  Score=129.14  Aligned_cols=195  Identities=18%  Similarity=0.167  Sum_probs=136.3

Q ss_pred             CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 022910           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI  163 (290)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~  163 (290)
                      ..|.+||.... ....+..+...+.+.+|+|++++|+.++..   ..|++|++.+++... +....+...+..|+|+|+.
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            35888887543 344455577789999999999999887643   469999998887543 3333444567899999997


Q ss_pred             EEE-eeCCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEcCCCCeeeEEEeCCCCccc
Q 022910          164 VLA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTE  237 (290)
Q Consensus       164 l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~  237 (290)
                      |+. .+.+|  .|++||+.+++. ..+..+.......+|+|+|++|+.++. +|  .|+++++.+++... +..   ...
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~---~g~  336 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF---QGN  336 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec---CCC
Confidence            764 44444  599999988764 344445555577899999998887664 44  47777877665432 221   223


Q ss_pred             CeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ....++|+|+|++|+..+.++   .|++|++.+++.. .+. +........|+|||
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG  390 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNG  390 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCC
Confidence            345689999999998765443   6999999887754 343 23345567899986

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.72  E-value=2.2e-18  Score=147.62  Aligned_cols=188  Identities=22%  Similarity=0.417  Sum_probs=149.3

Q ss_pred             eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEE
Q 022910           98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN  177 (290)
Q Consensus        98 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d  177 (290)
                      +.+..+.+|.+.|+|+.|...|.++++|+.|..++||...+..++....+|.+.|+.++.+.+..++++++.|..|++|.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            44556678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEE--------------EeC----------C-
Q 022910          178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV--------------IRG----------H-  232 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------~~~----------~-  232 (290)
                      +..+.++..+.+|.+.|++|+|+|-.    +.+.||++++||.+-.-.+..              +..          . 
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            99999999999999999999999954    778899999999871110000              000          0 


Q ss_pred             --CCcccCeEEEEEcCCC-----------CEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          233 --PYHTEGLTCLTISADS-----------TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       233 --~~~~~~v~~~~~~~~~-----------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                        ........+++|...+           .+.+++-.+-.+.+|++.+|.+++.+.+|...+..+.+||-
T Consensus       337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf  406 (1113)
T KOG0644|consen  337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF  406 (1113)
T ss_pred             CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence              0000111122222222           23334445667889999999999999999999999999873

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.4e-14  Score=124.27  Aligned_cols=224  Identities=18%  Similarity=0.233  Sum_probs=147.5

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCC--cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEE-EeCCCc--E
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDGL--V  131 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~--i  131 (290)
                      .+.+..+...+.+.+|+|++..++++...++  .|.+|++.+++... +....+......|+|+|+.|+. .+.+|.  |
T Consensus       210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I  288 (448)
T PRK04792        210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEI  288 (448)
T ss_pred             ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence            3455666778899999995444444443333  58888988776432 2222333457899999998765 455564  8


Q ss_pred             EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-C--CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE
Q 022910          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  208 (290)
                      +++++.+++.. .+..+........|+|+++.|+..+. +  ..|+++++.+++..+. ..........+|+|+|++|+.
T Consensus       289 y~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        289 YVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIM  366 (448)
T ss_pred             EEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEE
Confidence            88888877654 34444455677899999998877654 3  3577788877764432 222233345789999999876


Q ss_pred             EeC-CC--eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCCcEEEEEccCCCcEE
Q 022910          209 GSD-DA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-G--SVHMVNITTGKVVSSLVSHTDSIE  282 (290)
Q Consensus       209 ~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~v~  282 (290)
                      .+. .+  .|.++|+.+++.. .+...    .......|+|+|+.|+..+.+ |  .+++++. +|+....+..+.+.+.
T Consensus       367 ~~~~~g~~~I~~~dl~~g~~~-~lt~~----~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~  440 (448)
T PRK04792        367 VNRTNGKFNIARQDLETGAMQ-VLTST----RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVK  440 (448)
T ss_pred             EEecCCceEEEEEECCCCCeE-EccCC----CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcC
Confidence            654 33  5666788877643 33221    112234799999987776543 3  3777886 6777777877777888


Q ss_pred             EEEEecC
Q 022910          283 CIGFSRS  289 (290)
Q Consensus       283 ~i~~s~d  289 (290)
                      ..+|+|-
T Consensus       441 ~p~Wsp~  447 (448)
T PRK04792        441 SPAWSPF  447 (448)
T ss_pred             CCccCCC
Confidence            9999983

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=2.3e-14  Score=122.36  Aligned_cols=194  Identities=15%  Similarity=0.098  Sum_probs=133.2

Q ss_pred             cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC---CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 022910           88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV  164 (290)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  164 (290)
                      .|.+||...... ..+..+...+...+|+|+|+.|+..+.   ...|++|++.+++..... ...+.+..+.|+|+|+.|
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEE
Confidence            688888765443 334446678999999999998887643   457999999888654332 233345578999999988


Q ss_pred             EEe-eCCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEcCCCCeeeEEEeCCCCcccC
Q 022910          165 LAG-SEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-A--TLRVWNPKSGENIHVIRGHPYHTEG  238 (290)
Q Consensus       165 ~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~  238 (290)
                      +.. +.+|  .|++||+.+++..+ +..+...+....|+|+|+.|+..+.. +  .|+++++.++... .+..   ....
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---~~~~  332 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---EGSQ  332 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---CCCC
Confidence            865 3344  59999998876544 33344567889999999988776654 3  4666677766543 3322   2334


Q ss_pred             eEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          239 LTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       239 v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .....|+|+|++|+..+.+   ..|++||+.+++.. .+... .......|+|||
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG  385 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNG  385 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCC
Confidence            5678899999998876543   35889999887643 34322 234567899986

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.6e-16  Score=128.69  Aligned_cols=231  Identities=19%  Similarity=0.294  Sum_probs=166.2

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee--------------------------------
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--------------------------------  103 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------------------------  103 (290)
                      ....|.+|.+.|..+.|+. .+..|++|+.|..|.+||+..++.+..+                                
T Consensus       134 l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            4566778999999999998 8889999999999999998765443333                                


Q ss_pred             ----------------ccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceEEEEe---cCCC---CEEEEEEcCC
Q 022910          104 ----------------QGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLE---GPGG---GVEWVSWHPR  160 (290)
Q Consensus       104 ----------------~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~---~i~~i~~~~~  160 (290)
                                      ..|.++|.-++.-|... .|.+++.|+.+.-+|++.+.+...+.   .+..   ....++..|.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence                            23566666666666543 46667777777777776654433332   1222   4677888886


Q ss_pred             CC-EEEEeeCCCeEEEEECCcccE------EEeee------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe---
Q 022910          161 GH-IVLAGSEDSTVWMWNADRAAY------LNMFS------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE---  224 (290)
Q Consensus       161 ~~-~l~~~~~dg~i~i~d~~~~~~------~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---  224 (290)
                      .. .+++++.+-.+++||.+.-..      +.++-      .....|++++|+.++.-|+++..|-.|++|....+.   
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence            55 899999999999999875422      12221      234579999999888888888889999999543221   


Q ss_pred             ---------eeE-EEeCCCCcccCeEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          225 ---------NIH-VIRGHPYHTEGLTCLTI-SADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       225 ---------~~~-~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                               .+. .+++|. ....|..+-| -|...|+++|+.-|.|.||+-.+++.|+-+.+-..-|+||.=+|
T Consensus       373 p~~~s~~~~~~k~vYKGHr-N~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP  446 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHR-NSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP  446 (559)
T ss_pred             CCCCcchhhccchhhcccc-cccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence                     112 255544 2334767765 57888999999999999999999999998888666888887665

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=8.9e-16  Score=134.92  Aligned_cols=199  Identities=21%  Similarity=0.393  Sum_probs=151.2

Q ss_pred             EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEEC-CCCCEEEEEeCCCcEEEEcCCCC---ceE
Q 022910           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFS-MDGQLLASGGLDGLVQIWDPSSG---NLK  142 (290)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~---~~~  142 (290)
                      .-+.|..+.+.++++|. -..|+|||.........+. +....|+++.-+ +.|+.|++|..||.|++||.+..   ..+
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred             eeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence            34567776777776664 6899999999887777665 344566776654 35789999999999999998754   346


Q ss_pred             EEEecCCCC--EEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEe--eecC---CCCeEEEEEcCCCCEEEEEeCCCe
Q 022910          143 CTLEGPGGG--VEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNM--FSGH---GSSVTCGDFTPDGKTICTGSDDAT  214 (290)
Q Consensus       143 ~~~~~~~~~--i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--~~~~---~~~i~~~~~~~~~~~l~~~~~dg~  214 (290)
                      ..++.|...  |..+.+.+.|- .|++|+.+|.|++||+|.......  +..|   ++.++++..++....+++|+. +.
T Consensus      1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ 1326 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL 1326 (1387)
T ss_pred             eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce
Confidence            677778776  99999988765 599999999999999998522221  2222   335999999999999999998 99


Q ss_pred             EEEEcCCCCeeeEEEeCCC----CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 022910          215 LRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (290)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  269 (290)
                      |+||++. |+.+..++...    .....+.|++|+|-.-+||+|+.|.+|.+|......
T Consensus      1327 ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1327 IKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             EEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            9999986 44434433221    134567999999999999999999999999876543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.70  E-value=1.1e-13  Score=115.10  Aligned_cols=235  Identities=16%  Similarity=0.196  Sum_probs=153.7

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe-CCCcEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQ  132 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  132 (290)
                      .+.+..+......-..+.|+| +++++++++.||.|.++|+.+.+.+.+++.. ....+++++++|++++++. ..+.+.
T Consensus        26 ~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~  103 (369)
T PF02239_consen   26 NKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVS  103 (369)
T ss_dssp             -SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEE
T ss_pred             CeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCcee
Confidence            455666765544434577899 6667777788999999999999999998854 4468899999999988775 589999


Q ss_pred             EEcCCCCceEEEEecC-------CCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCcccEEE-eeecCCCCeEEEEEcCCC
Q 022910          133 IWDPSSGNLKCTLEGP-------GGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDG  203 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~  203 (290)
                      ++|..+.+++..+...       ...+..+..+|....+++.-. .+.|.+.|....+.+. .............|+|++
T Consensus       104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg  183 (369)
T PF02239_consen  104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG  183 (369)
T ss_dssp             EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTS
T ss_pred             EeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccc
Confidence            9999999998887542       346778888888886665554 5889999987654332 233345677889999999


Q ss_pred             CEEEEE-eCCCeEEEEcCCCCeeeEEEeCCCC------------------------------------------------
Q 022910          204 KTICTG-SDDATLRVWNPKSGENIHVIRGHPY------------------------------------------------  234 (290)
Q Consensus       204 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~------------------------------------------------  234 (290)
                      ++++++ .....|.++|..+++.+..+.....                                                
T Consensus       184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~  263 (369)
T PF02239_consen  184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK  263 (369)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred             ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence            988664 4566888888887765443321000                                                


Q ss_pred             ---cccCeEEEEEcCCCCEEEEE----eCCCcEEEEEcCCCcEEEEEccC-CCcEEEEEEecCC
Q 022910          235 ---HTEGLTCLTISADSTLALSG----SKDGSVHMVNITTGKVVSSLVSH-TDSIECIGFSRSE  290 (290)
Q Consensus       235 ---~~~~v~~~~~~~~~~~l~~~----~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~s~d~  290 (290)
                         ..+.-..+..+|++++|++.    ...++|.++|.++.+.+.++... ...+..+.|++||
T Consensus       264 ~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG  327 (369)
T PF02239_consen  264 TIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDG  327 (369)
T ss_dssp             EEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTS
T ss_pred             EEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCC
Confidence               01112456779999999988    44579999999999888888642 2369999999987

...

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=1.2e-13  Score=106.83  Aligned_cols=155  Identities=17%  Similarity=0.279  Sum_probs=118.1

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEcc-CCeeeeeeccccCCEEEEEECC--CCCEEEEE-eCCCcEEEEcCCCC
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSM--DGQLLASG-GLDGLVQIWDPSSG  139 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~  139 (290)
                      ..+|.++.+.+ +  .|++.- .+.|+||... +.+.++.+.....|=--++..|  +..+||.- -.-|.|+|-|+...
T Consensus        94 ~~~I~~V~l~r-~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~  169 (346)
T KOG2111|consen   94 NSEIKAVKLRR-D--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST  169 (346)
T ss_pred             ccceeeEEEcC-C--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence            45777887776 3  344433 5789999988 4555555543222211233344  33345543 34699999999877


Q ss_pred             ce--EEEEecCCCCEEEEEEcCCCCEEEEeeCCCe-EEEEECCcccEEEeeec--CCCCeEEEEEcCCCCEEEEEeCCCe
Q 022910          140 NL--KCTLEGPGGGVEWVSWHPRGHIVLAGSEDST-VWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDDAT  214 (290)
Q Consensus       140 ~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~  214 (290)
                      +.  ...+.+|.+.|.|++.+.+|.++|+++..|+ |+|||..++..+..++.  ....|++|+|+|+..+|++++.-|+
T Consensus       170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT  249 (346)
T KOG2111|consen  170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT  249 (346)
T ss_pred             CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence            65  4778899999999999999999999999998 89999999999988864  3467999999999999999999999


Q ss_pred             EEEEcCCC
Q 022910          215 LRVWNPKS  222 (290)
Q Consensus       215 i~i~d~~~  222 (290)
                      |+||.++.
T Consensus       250 lHiF~l~~  257 (346)
T KOG2111|consen  250 LHIFSLRD  257 (346)
T ss_pred             EEEEEeec
Confidence            99998865

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.66  E-value=3.8e-13  Score=111.94  Aligned_cols=192  Identities=18%  Similarity=0.194  Sum_probs=140.1

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEc
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH  158 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  158 (290)
                      ++++-..++.|.+.|..+.+.+..+.........+.|+|+++++++++.||.|.++|+.+++.+.+++... ....++++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s   86 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVS   86 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE-
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEc
Confidence            33566678999999999999999998654444557899999999999999999999999999999988654 47889999


Q ss_pred             CCCCEEEEee-CCCeEEEEECCcccEEEeeecC-------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEcCCCCeeeE--
Q 022910          159 PRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGH-------GSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIH--  227 (290)
Q Consensus       159 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~--  227 (290)
                      ++|++++++. ..+.+.++|.++.++++.+...       ...+.++..+|....++..-. .+.|.+.|....+.+.  
T Consensus        87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~  166 (369)
T PF02239_consen   87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT  166 (369)
T ss_dssp             -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred             CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence            9999988776 5899999999999988877542       346778888888886665544 5889888887654432  


Q ss_pred             EEeCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEEc
Q 022910          228 VIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      .+.    .........|+|++++++++ .....|-++|..+++.+..+.
T Consensus       167 ~i~----~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  167 TIK----VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             EEE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             eec----ccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence            333    34556788999999987665 556799999999998887664

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.66  E-value=6.9e-15  Score=114.14  Aligned_cols=197  Identities=18%  Similarity=0.223  Sum_probs=145.6

Q ss_pred             EEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEcCCCCceEEEEec
Q 022910           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKCTLEG  147 (290)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~  147 (290)
                      -..|+| +++++|+++.- .+.|-|..+.+....+. .-..|.-+.|..+..+++++ ..++.|.+|++...+....+..
T Consensus        13 ~c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde   89 (447)
T KOG4497|consen   13 FCSFSP-CGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE   89 (447)
T ss_pred             ceeECC-CCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence            357999 88999988754 78888888776555444 34568889999888876655 6688999999999988888888


Q ss_pred             CCCCEEEEEEcCCCCE-EEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC--------------
Q 022910          148 PGGGVEWVSWHPRGHI-VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD--------------  212 (290)
Q Consensus       148 ~~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------  212 (290)
                      ...++.++.|+|+|+. |.+...+-.|.+|.+.+.+.... +..+..+..++|+|+|++.+..+.-              
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W  168 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW  168 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence            8888999999999965 55566688999999988765443 3344566888999999987766431              


Q ss_pred             ----------------------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 022910          213 ----------------------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (290)
Q Consensus       213 ----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  270 (290)
                                            ..+.+||---...+..+.    ..-++..+.|+|.+++|++|+.|+.+|+.+--+.+.
T Consensus       169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe----~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~  244 (447)
T KOG4497|consen  169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE----RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP  244 (447)
T ss_pred             HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee----eccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence                                  224444432222222222    345788999999999999999999999988666555


Q ss_pred             EEE
Q 022910          271 VSS  273 (290)
Q Consensus       271 ~~~  273 (290)
                      +..
T Consensus       245 f~e  247 (447)
T KOG4497|consen  245 FGE  247 (447)
T ss_pred             hhh
Confidence            443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.65  E-value=1.3e-13  Score=107.23  Aligned_cols=228  Identities=16%  Similarity=0.191  Sum_probs=157.4

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC-------
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-------  128 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------  128 (290)
                      -...+......+.+++|+|++..+|.+...+-.|.+|.+.+.+... ++-.+..+..++|+|+|++.+.++.-       
T Consensus        83 w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~  161 (447)
T KOG4497|consen   83 WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQ  161 (447)
T ss_pred             eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHH
Confidence            3445566778999999999776888899999999999998866444 33234456889999999988876542       


Q ss_pred             -----------------------------CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC
Q 022910          129 -----------------------------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD  179 (290)
Q Consensus       129 -----------------------------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  179 (290)
                                                   ..+.+||.--.-.+..+. ..-.+..+.|+|.+++|++|+.|+.+++.+--
T Consensus       162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhcee
Confidence                                         223333322111111222 22358899999999999999999999886532


Q ss_pred             cccE------------------------------------------------------------EEeee------cCCCC
Q 022910          180 RAAY------------------------------------------------------------LNMFS------GHGSS  193 (290)
Q Consensus       180 ~~~~------------------------------------------------------------~~~~~------~~~~~  193 (290)
                      +-+.                                                            +..++      .....
T Consensus       241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g  320 (447)
T KOG4497|consen  241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG  320 (447)
T ss_pred             eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence            2111                                                            00011      11334


Q ss_pred             eEEEEEcCCCCEEEEEeC--CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 022910          194 VTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV  271 (290)
Q Consensus       194 i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  271 (290)
                      +.-++|+++..++++-..  -..+-+||++..+....+.    ...+|....|+|....|+.+....++++|.......+
T Consensus       321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi----Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V  396 (447)
T KOG4497|consen  321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI----QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV  396 (447)
T ss_pred             cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh----hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence            677899999988887643  3578999999877655554    5678999999998888888888888999987554433


Q ss_pred             EEEccCCCcEEEEEEecCC
Q 022910          272 SSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       272 ~~~~~~~~~v~~i~~s~d~  290 (290)
                      . .+...-.|..+.|..+|
T Consensus       397 ~-vP~~GF~i~~l~W~~~g  414 (447)
T KOG4497|consen  397 G-VPKKGFNIQKLQWLQPG  414 (447)
T ss_pred             e-cCCCCceeeeEEecCCC
Confidence            3 33334578888887654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.64  E-value=8.3e-14  Score=115.72  Aligned_cols=189  Identities=17%  Similarity=0.250  Sum_probs=156.7

Q ss_pred             CCCCcEEEEecCCCcEEEEEccCCeeeeeecc---ccCCEEEEEEC------C--------------CCCEEEEEeCCCc
Q 022910           74 PTDATLVATGGGDDKGFFWRINQGDWASEIQG---HKDSVSSLAFS------M--------------DGQLLASGGLDGL  130 (290)
Q Consensus        74 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~i~~~~~~------~--------------~~~~l~~~~~dg~  130 (290)
                      |....++|....||.+++|+...++....+..   -.+..++..|.      |              +...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            33667899999999999999999887666542   23344455552      2              2346888888999


Q ss_pred             EEEEcCCCCceEEEEe--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE
Q 022910          131 VQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  208 (290)
                      |.+|++..++....+.  .|.+++.++.++.+-..|.+++.|+.+..|+....+.++.+...+..+.+++++|++..+++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            9999999999888776  58889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC-----CCEEEEE-eCCCcEEEEEcCC
Q 022910          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-----STLALSG-SKDGSVHMVNITT  267 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~~wd~~~  267 (290)
                      ++  ++|++||+.+.+.+..+.+   |.++|+++.|.-.     |.+++++ ..+..|.+|-+..
T Consensus       162 as--~~ik~~~~~~kevv~~ftg---h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKEVVITFTG---HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cc--ceEEEEEccCceEEEEecC---CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            87  7899999999999999998   8899999999765     5665554 4455677776543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.64  E-value=4.7e-14  Score=117.17  Aligned_cols=167  Identities=19%  Similarity=0.286  Sum_probs=141.4

Q ss_pred             CCCCEEEEEeCCCcEEEEcCCCCceEEEEecC---CCCEEEEEE------cC--------------CCCEEEEeeCCCeE
Q 022910          117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP---GGGVEWVSW------HP--------------RGHIVLAGSEDSTV  173 (290)
Q Consensus       117 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~i~~i~~------~~--------------~~~~l~~~~~dg~i  173 (290)
                      |...++|....||.++||+...++..+.|...   .+..++..|      +|              +-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            45668999999999999999999887776531   223344444      22              23468888999999


Q ss_pred             EEEECCcccEEEeee--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEE
Q 022910          174 WMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA  251 (290)
Q Consensus       174 ~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  251 (290)
                      .+|++..++...++.  .|.++|.++.++.+-..|.+++.|+.+..|+....+.+.....   ....+.+++.+||+..|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcCCCCEE
Confidence            999999999888776  4889999999999999999999999999999999988888876   56778999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          252 LSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       252 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      ++++  +.|++|++.+++.+.+|.+|.++|++++|--
T Consensus       160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~  194 (541)
T KOG4547|consen  160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT  194 (541)
T ss_pred             Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE
Confidence            9886  5899999999999999999999999999964

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.64  E-value=2.1e-13  Score=116.77  Aligned_cols=195  Identities=18%  Similarity=0.203  Sum_probs=134.8

Q ss_pred             CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 022910           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI  163 (290)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~  163 (290)
                      ..|.++|..... ...+..+...+...+|+|++++|+.++..   ..|++|++.+++.... ..+.+.+.+++|+|+++.
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence            357777775433 34444566678999999999999887654   4799999998865433 334455777999999997


Q ss_pred             EEEe-eCCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEcCCCCeeeEEEeCCCCccc
Q 022910          164 VLAG-SEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-A--TLRVWNPKSGENIHVIRGHPYHTE  237 (290)
Q Consensus       164 l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~  237 (290)
                      |+.. +.++  .|++|++.+++.. .+..+........|+|+++.|+..+.. +  .|+++++.+++.. .+..   +..
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~---~~~  322 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF---RGG  322 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec---CCC
Confidence            7654 4343  5999999877643 333344445577899999988766543 3  6888898876543 3332   344


Q ss_pred             CeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .+..+.|+|++++|+.++.++   .|.+|++.++.. ..+... ......+|+|||
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg  376 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNG  376 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCC
Confidence            567789999999999888776   899999987654 333322 234456788875

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.63  E-value=3.5e-14  Score=126.77  Aligned_cols=191  Identities=18%  Similarity=0.251  Sum_probs=145.6

Q ss_pred             CeeeeeeccccCCEEEEEECCCC-CEEEEEeCCCcEEEEcCCCC-------ceEEEEecCCCCEEEEEEcCCCCEEEEee
Q 022910           97 GDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRGHIVLAGS  168 (290)
Q Consensus        97 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  168 (290)
                      |..+..+..|...+..++.++.. .+|++||.||+|++|++..-       +...++......+.++.+.+.+..+|+++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            56777788899999898887654 89999999999999998642       22334444567899999999999999999


Q ss_pred             CCCeEEEEECCccc-------EEEeeec--CCCCeEEEEEcC-CCC-EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCccc
Q 022910          169 EDSTVWMWNADRAA-------YLNMFSG--HGSSVTCGDFTP-DGK-TICTGSDDATLRVWNPKSGENIHVIRGHPYHTE  237 (290)
Q Consensus       169 ~dg~i~i~d~~~~~-------~~~~~~~--~~~~i~~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  237 (290)
                      .||.|.+.++....       ..+....  .+..+..-+|.. .+. .++.+..-+.|..||+++......++... ..+
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-~hG 1196 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-RHG 1196 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-ccc
Confidence            99999999987621       1122221  222233333333 233 67788889999999999888777776544 457


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cCCCcEEEEEEec
Q 022910          238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSR  288 (290)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~s~  288 (290)
                      .|++++.+|.+++++.|+..|.+.+||++-+.++.+.. ++..+|+.+..+|
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence            79999999999999999999999999999888887765 3457888877765

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.62  E-value=4e-13  Score=102.88  Aligned_cols=203  Identities=14%  Similarity=0.216  Sum_probs=150.5

Q ss_pred             CCCcEEEEEccCCeeee--ee-ccccCCEEEEEECC---CCC-EEEEEeCCCcEEEEcCCCCceEEEEecCC------CC
Q 022910           85 GDDKGFFWRINQGDWAS--EI-QGHKDSVSSLAFSM---DGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPG------GG  151 (290)
Q Consensus        85 ~dg~i~iw~~~~~~~~~--~~-~~~~~~i~~~~~~~---~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~  151 (290)
                      ..|.+.+|++...+...  .+ ......+..|.|+.   ++. .++-+...|.|.++..........+++-.      ..
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            45789999988765443  11 22345677788863   444 56667778999999876544444443321      12


Q ss_pred             EEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE--EeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCeeeEE
Q 022910          152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHV  228 (290)
Q Consensus       152 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  228 (290)
                      ..++.|++.+..++++..+|.+.+-+.......  +.++.|...++...|+. +.+++++|+.|+.+..||+|..+ ...
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i  202 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFI  202 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-cee
Confidence            457889999999999999999997766555443  47889999999999987 56788999999999999999443 234


Q ss_pred             EeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CcEEEEEccCCCcEEEEEEecC
Q 022910          229 IRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      +...+.|..+|.++.-+| .+.+|++|+.|-.|++||.++ ++++..-.. .+.|+.+.++|-
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~  264 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPE  264 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecch
Confidence            444445889999999887 788999999999999999995 666665543 488999999884

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=3.2e-14  Score=117.83  Aligned_cols=194  Identities=18%  Similarity=0.341  Sum_probs=155.0

Q ss_pred             EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec
Q 022910           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (290)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (290)
                      ..++++...-.+++.| ....|+-+++..|+.+..+....+.++++..++-..+|++|+.+|.|..||.+....+.++..
T Consensus       137 RDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~  215 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA  215 (703)
T ss_pred             ccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence            3455554344455444 456788999999999999988889999999999999999999999999999988776655532


Q ss_pred             ------CCC-----CEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-cCCCCeEEEEEcCC--CCEEEEEeCCC
Q 022910          148 ------PGG-----GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPD--GKTICTGSDDA  213 (290)
Q Consensus       148 ------~~~-----~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~l~~~~~dg  213 (290)
                            +.+     .|+++.|+.+|-.+++|+..|.+.|||+++.+++..-. +...+|..+.|.+.  ++.+++ ....
T Consensus       216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~  294 (703)
T KOG2321|consen  216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKR  294 (703)
T ss_pred             ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchH
Confidence                  222     49999999999999999999999999999988765543 34568999999875  344444 4567


Q ss_pred             eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      .++|||-.+|+....+.    ....++.+|+-|++.+++++-.++.+..|=+..
T Consensus       295 ~~kiWd~~~Gk~~asiE----pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  295 ILKIWDECTGKPMASIE----PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             HhhhcccccCCceeecc----ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            89999999999887776    456699999999999999999988887776654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=8.5e-13  Score=113.39  Aligned_cols=194  Identities=17%  Similarity=0.151  Sum_probs=130.8

Q ss_pred             cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 022910           88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV  164 (290)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  164 (290)
                      .|.++|..... ...+..+...+....|+|+|++|+..+..   ..|.+|++.+++... +....+.+....|+|+|+.|
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            46677776544 34444567788999999999998877643   469999998887543 33333445678999999988


Q ss_pred             EE-eeCCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEcCCCCeeeEEEeCCCCcccC
Q 022910          165 LA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-D--ATLRVWNPKSGENIHVIRGHPYHTEG  238 (290)
Q Consensus       165 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~~  238 (290)
                      +. ...+|  .|++||+.+++.. .+..+........|+|+|+.|+..+. +  ..|+++++.+++......    ....
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~----~~~~  332 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF----VGNY  332 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec----CCCC
Confidence            74 44444  6899999887644 34445555667889999998876553 3  368888887776433222    1223


Q ss_pred             eEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          239 LTCLTISADSTLALSGSKD-G--SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       239 v~~~~~~~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .....|+|+|++|+..+.. +  .|.+||+.+++. ..+.. ........|+|||
T Consensus       333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~~~~~p~~spdg  385 (430)
T PRK00178        333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TSLDESPSVAPNG  385 (430)
T ss_pred             ccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC-CCCCCCceECCCC
Confidence            3457899999998877653 3  588999988764 33332 2223356888886

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.61  E-value=5e-14  Score=123.87  Aligned_cols=187  Identities=21%  Similarity=0.353  Sum_probs=152.8

Q ss_pred             CCcEEEEecCCCcEEEEEccCCeeeeeeccccCC----EEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCC
Q 022910           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDS----VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG  151 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  151 (290)
                      ....++.++.+..+.+|+...+.....+......    ..-+.++++.-++++|+.-+.|.+|.....+....+.+|.+.
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence            3456777778899999999887776666532221    122234566669999999999999999855544578899999


Q ss_pred             EEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE-eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEe
Q 022910          152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR  230 (290)
Q Consensus       152 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  230 (290)
                      |..+.|+-+|+++++.+.|..+++|++.+.+... ..-+|...|..++|.|+  .+++++.|.+.++|+.. +..+..+.
T Consensus       178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~  254 (967)
T KOG0974|consen  178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYD  254 (967)
T ss_pred             eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhh
Confidence            9999999999999999999999999999988766 66789999999999988  89999999999999664 44445666


Q ss_pred             CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      .+  ....+..++..++...++|++.||.+++|++..
T Consensus       255 ~h--~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  255 EH--SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             hh--hhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            54  456799999999999999999999999999864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.60  E-value=1.7e-11  Score=101.96  Aligned_cols=222  Identities=18%  Similarity=0.293  Sum_probs=143.9

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-Ceeeee---ec----------cccCCEEEEEECCCCCEEEEEeC-C
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASE---IQ----------GHKDSVSSLAFSMDGQLLASGGL-D  128 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~~~~-d  128 (290)
                      ......++++|++..++++...+|.|.++++.. +.....   +.          ......+++.|+|+++++++... .
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~  165 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA  165 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence            345567899995555555555689999999987 333222   11          12346789999999998877643 4


Q ss_pred             CcEEEEcCCCCc--eE--EEEe-cCCCCEEEEEEcCCCCEEEEee-CCCeEEEEECC--ccc--EEEeeec------CCC
Q 022910          129 GLVQIWDPSSGN--LK--CTLE-GPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNAD--RAA--YLNMFSG------HGS  192 (290)
Q Consensus       129 g~i~i~d~~~~~--~~--~~~~-~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~------~~~  192 (290)
                      ..|++|++....  +.  ..+. ......+.++|+|+++++++.. .++.|.++++.  ++.  .+..+..      ...
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  245 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN  245 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred             CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence            579999987665  32  2222 2445689999999999877665 47789999987  332  2222221      112


Q ss_pred             CeEEEEEcCCCCEEEEEe-CCCeEEEEcCC--CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEc--C
Q 022910          193 SVTCGDFTPDGKTICTGS-DDATLRVWNPK--SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNI--T  266 (290)
Q Consensus       193 ~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~--~  266 (290)
                      ....|+++|+|++|+++. ....|.+|++.  ++.. ..+............+.++|+|++|+++.. ++.|.+|++  .
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~  324 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD  324 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence            578999999999988765 46789999983  2332 222222213455899999999999998875 568998876  5


Q ss_pred             CCcEEEEEc-cCCCcEEEEEE
Q 022910          267 TGKVVSSLV-SHTDSIECIGF  286 (290)
Q Consensus       267 ~~~~~~~~~-~~~~~v~~i~~  286 (290)
                      +|++...-. ..-....||.|
T Consensus       325 tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  325 TGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             TTEEEEEEEEEESSSEEEEEE
T ss_pred             CCcEEEecccccCCCCEEEeC
Confidence            666544432 22356677776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.59  E-value=9.6e-15  Score=134.48  Aligned_cols=197  Identities=12%  Similarity=0.272  Sum_probs=161.1

Q ss_pred             eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC
Q 022910           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS  138 (290)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  138 (290)
                      ++.|-..|.++.-+|.. .+.+||+.||.+++|....++.+..+. .....|+.+.|+.+|+.+..+..||.|.+|.+. 
T Consensus      2204 ~k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             eecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            34456678888888944 455699999999999999888776654 233889999999999999999999999999987 


Q ss_pred             CceEEEEecCCCCEEEEEEcCCCCEEEEee---CCCeEEEEECCcc---cEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGS---EDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       139 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      .++....+.|......+.|-.  ..+++++   .++.+.+||.-..   .++.  +.|...++++++.|..++|++|+.+
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence            677778888988888888864  5677654   4678999996432   2233  7799999999999999999999999


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      |.|++||++..+.++.++.            +. ...++++|+..|.|+||++.....+++++
T Consensus      2358 G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             CcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            9999999998777665552            44 56799999999999999999887777765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.58  E-value=3.6e-11  Score=100.09  Aligned_cols=225  Identities=20%  Similarity=0.285  Sum_probs=147.7

Q ss_pred             cCEEEEEECCCCCcEEEEecC----CCcEEEEEccCC--e--eeeeeccccCCEEEEEECCCCCEEEEEeC-CCcEEEEc
Q 022910           65 DEVYSVACSPTDATLVATGGG----DDKGFFWRINQG--D--WASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQIWD  135 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d  135 (290)
                      .....++++| ++.+|++...    .+.|..|.+...  +  .+............++++|++++|+++.. +|.|.+++
T Consensus        37 ~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   37 ENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            3456788899 4555555443    679999998764  3  23333323345567999999999888864 89999999


Q ss_pred             CCC-CceEEE---Ee----------cCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCccc--EE--Eee-ecCCCCeE
Q 022910          136 PSS-GNLKCT---LE----------GPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAA--YL--NMF-SGHGSSVT  195 (290)
Q Consensus       136 ~~~-~~~~~~---~~----------~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~~--~~~-~~~~~~i~  195 (290)
                      +.. +.+...   +.          .......++.|+|+++++++... ...|++|++....  ..  ..+ .......+
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            987 333222   21          12345789999999998887654 4579999987654  21  222 23556789


Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEcCC--CCe--eeEEEeCCC---CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 022910          196 CGDFTPDGKTICTGS-DDATLRVWNPK--SGE--NIHVIRGHP---YHTEGLTCLTISADSTLALSGSK-DGSVHMVNIT  266 (290)
Q Consensus       196 ~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~  266 (290)
                      .+.|+|+++++++.. .++.|.+|++.  ++.  .+..+....   ........++++|+|++|+++.. .+.|.+|++.
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            999999999887655 47889999887  442  233333221   11236789999999999888764 6689999993


Q ss_pred             --CCc--EEEEEccCCCcEEEEEEecCC
Q 022910          267 --TGK--VVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       267 --~~~--~~~~~~~~~~~v~~i~~s~d~  290 (290)
                        +++  .+..+.......+.++++|+|
T Consensus       276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g  303 (345)
T PF10282_consen  276 PATGTLTLVQTVPTGGKFPRHFAFSPDG  303 (345)
T ss_dssp             TTTTTEEEEEEEEESSSSEEEEEE-TTS
T ss_pred             cCCCceEEEEEEeCCCCCccEEEEeCCC
Confidence              333  444555444568999999986

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=3.3e-12  Score=109.71  Aligned_cols=194  Identities=17%  Similarity=0.137  Sum_probs=126.5

Q ss_pred             cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 022910           88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV  164 (290)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  164 (290)
                      .|.++|...... ..+..+...+....|+|+|++|+..+..   ..|++||+.+++.... ....+......|+|+|+.|
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence            566667654433 3444466788899999999988876543   3688999988775433 2223334578999999977


Q ss_pred             EE-eeCCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEcCCCCeeeEEEeCCCCcccC
Q 022910          165 LA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEG  238 (290)
Q Consensus       165 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~  238 (290)
                      +. .+.+|  .|+++|+.+++.. .+..+.......+|+|+++.|+..+. ++  .|+++|+.+++......    ....
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~----~g~~  351 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF----EGEQ  351 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec----CCCC
Confidence            75 45555  4888899877643 44445555677899999998876553 33  57777887776433221    1222


Q ss_pred             eEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          239 LTCLTISADSTLALSGSKD-G--SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       239 v~~~~~~~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ....+|+|+|++|+..+.. +  .|.++|+.+++.. .+... .......|+|||
T Consensus       352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG  404 (448)
T PRK04792        352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNG  404 (448)
T ss_pred             CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCC
Confidence            3456899999988776553 3  5667788777643 33322 122345788876

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.54  E-value=9e-11  Score=95.92  Aligned_cols=199  Identities=14%  Similarity=0.122  Sum_probs=142.6

Q ss_pred             ECCCCCcEEEEec---------CCCcEEEEEccCCeeeeeeccccC-------CEEEEEECCCCCEEEEEe-C-CCcEEE
Q 022910           72 CSPTDATLVATGG---------GDDKGFFWRINQGDWASEIQGHKD-------SVSSLAFSMDGQLLASGG-L-DGLVQI  133 (290)
Q Consensus        72 ~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~-~-dg~i~i  133 (290)
                      ++|+++.++++.+         .+..|.+||+.+.+.+..+.....       ....++++|+|++|++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8995555555556         688999999999999988763222       234788999999988776 3 689999


Q ss_pred             EcCCCCceEEEEecCC------------------CC-------------EEEE--------------EEcC-CCCEEEEe
Q 022910          134 WDPSSGNLKCTLEGPG------------------GG-------------VEWV--------------SWHP-RGHIVLAG  167 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~------------------~~-------------i~~i--------------~~~~-~~~~l~~~  167 (290)
                      .|+.+++.+..+....                  +.             ....              .|.+ +++++++.
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence            9999887665432111                  00             0011              1123 67777776


Q ss_pred             eCCCeEEEEECCcc-----cEEEeeec-------CCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEcCCCCee
Q 022910          168 SEDSTVWMWNADRA-----AYLNMFSG-------HGSSVTCGDFTPDGKTICTGS----------DDATLRVWNPKSGEN  225 (290)
Q Consensus       168 ~~dg~i~i~d~~~~-----~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~  225 (290)
                      .. |.|++.|+...     .....+..       ....+.-++++|+++.+++..          ..+.|.++|..+++.
T Consensus       213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv  291 (352)
T TIGR02658       213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR  291 (352)
T ss_pred             cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence            66 99999996443     22222211       233445599999999888743          124799999999999


Q ss_pred             eEEEeCCCCcccCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCcEEEEEc
Q 022910          226 IHVIRGHPYHTEGLTCLTISADST-LALSGS-KDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~~~  275 (290)
                      +..+..    ...+..++++||++ +|++.. .++.|.++|+.+++.++++.
T Consensus       292 i~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       292 LRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            988873    56789999999999 887776 57889999999999999983

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=6.3e-14  Score=113.97  Aligned_cols=210  Identities=20%  Similarity=0.341  Sum_probs=162.6

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee---ccccC---CEEEEEECCCCC-EEEEEeCCC
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI---QGHKD---SVSSLAFSMDGQ-LLASGGLDG  129 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~---~i~~~~~~~~~~-~l~~~~~dg  129 (290)
                      ...+..|.++|..++.-|...+-|.+++.|+.+.-+|+........+   ..+..   ....++..|... .+++++.|-
T Consensus       225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq  304 (559)
T KOG1334|consen  225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ  304 (559)
T ss_pred             ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence            55677899999999999988999999999999999999876543332   22333   567888888665 899999999


Q ss_pred             cEEEEcCCCCce------EEEEe------cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc------------cEEE
Q 022910          130 LVQIWDPSSGNL------KCTLE------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA------------AYLN  185 (290)
Q Consensus       130 ~i~i~d~~~~~~------~~~~~------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~------------~~~~  185 (290)
                      .+++||.+.-..      +..+.      ...-.|++++|+.++.-|+++..|-.|+++.-..+            ..++
T Consensus       305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k  384 (559)
T KOG1334|consen  305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK  384 (559)
T ss_pred             hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence            999999864321      12221      12346999999988888888888999999953321            1222


Q ss_pred             -eeecCCC--CeEEEEE-cCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910          186 -MFSGHGS--SVTCGDF-TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH  261 (290)
Q Consensus       186 -~~~~~~~--~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  261 (290)
                       .+++|..  .|..+-| -|...|+++|+..|.|.||+-.+++.+..+.+.   ...|+||.-+|--.+||+++-|..|+
T Consensus       385 ~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD---r~VVNCLEpHP~~PvLAsSGid~DVK  461 (559)
T KOG1334|consen  385 RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD---RHVVNCLEPHPHLPVLASSGIDHDVK  461 (559)
T ss_pred             hhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc---cceEeccCCCCCCchhhccCCcccee
Confidence             3667654  4556654 578899999999999999999999999888874   44899999999999999999999999


Q ss_pred             EEEcCCCc
Q 022910          262 MVNITTGK  269 (290)
Q Consensus       262 ~wd~~~~~  269 (290)
                      ||-..+.+
T Consensus       462 IWTP~~~e  469 (559)
T KOG1334|consen  462 IWTPLTAE  469 (559)
T ss_pred             eecCCccc
Confidence            99875443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=6.9e-12  Score=103.93  Aligned_cols=215  Identities=16%  Similarity=0.233  Sum_probs=145.4

Q ss_pred             CCcCEEEEEECCC-CCcEEEE-----ecCCCcEEEEEccCCeeeeee---ccccCCEEEEEECCCCC-EEEEEeC--C--
Q 022910           63 HSDEVYSVACSPT-DATLVAT-----GGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQ-LLASGGL--D--  128 (290)
Q Consensus        63 h~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~---~~~~~~i~~~~~~~~~~-~l~~~~~--d--  128 (290)
                      |...|..+.++|. ....+|+     .+.-+.|+||.+........+   .-....-..+.|++-|. +|+.++.  |  
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt  243 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT  243 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence            5778999999994 2344443     356678999998732221111   11223335688988777 3333322  2  


Q ss_pred             -------CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe--eCCCeEEEEECCcccEEEeeecCCCCeEEEEE
Q 022910          129 -------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG--SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF  199 (290)
Q Consensus       129 -------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  199 (290)
                             .+++++++........+. ..++|.++.|+|+++-|+++  ..-..+.|||++ +.++..+  ..++-.++-|
T Consensus       244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~f  319 (566)
T KOG2315|consen  244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFF  319 (566)
T ss_pred             CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEE
Confidence                   468888877434433333 47899999999999877664  456789999996 4445444  3566678889


Q ss_pred             cCCCCEEEEEeC---CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCcE
Q 022910          200 TPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK------DGSVHMVNITTGKV  270 (290)
Q Consensus       200 ~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~  270 (290)
                      +|.|++|+.++-   -|.|-|||+.+.+++..+..     ...+-+.|+|+|.+++|++.      |+.++||+. +|+.
T Consensus       320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~  393 (566)
T KOG2315|consen  320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSL  393 (566)
T ss_pred             CCCCCEEEEeecCCCCCceEEEeccchhhcccccc-----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCce
Confidence            999999987654   58899999999777766653     33566799999999999876      688999997 5666


Q ss_pred             EEEEccCCCcEEEEEEec
Q 022910          271 VSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       271 ~~~~~~~~~~v~~i~~s~  288 (290)
                      +....-. ...+.+.|-|
T Consensus       394 l~~~~f~-sEL~qv~W~P  410 (566)
T KOG2315|consen  394 LHEKMFK-SELLQVEWRP  410 (566)
T ss_pred             eehhhhh-HhHhheeeee
Confidence            5543321 1455666653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.2e-11  Score=105.46  Aligned_cols=197  Identities=11%  Similarity=0.089  Sum_probs=123.0

Q ss_pred             cEEEEEccCCeeeeeeccccCCEEEEEECCCCCE--E-EEEeCC--CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCC
Q 022910           88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL--L-ASGGLD--GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH  162 (290)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l-~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~  162 (290)
                      .|.+.|...+.. ..+......+..-.|+|+|+.  + ++...+  ..|.+.++.+++...... ..+......|+|+|+
T Consensus       166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~  243 (428)
T PRK01029        166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKK  243 (428)
T ss_pred             eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCC
Confidence            566666654433 334445556778899999975  3 233333  468888988776543333 344456789999999


Q ss_pred             EEEEeeC-CC----eEEEEECCcc---cEEEeeecCCCCeEEEEEcCCCCEEEEEe-CCCe--EEEEcCCC-CeeeEEEe
Q 022910          163 IVLAGSE-DS----TVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDAT--LRVWNPKS-GENIHVIR  230 (290)
Q Consensus       163 ~l~~~~~-dg----~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~~  230 (290)
                      .|+..+. .|    .+..|++..+   ...+............+|+|+|+.|+..+ .+|.  |+++++.. +.....+.
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt  323 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT  323 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence            8887653 22    3444777652   32333322223446789999999887655 4564  44445432 22233333


Q ss_pred             CCCCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          231 GHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .   ....+....|+|+|+.|+..+..   ..|++||+.+++... +......+....|+|||
T Consensus       324 ~---~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG  382 (428)
T PRK01029        324 K---KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDS  382 (428)
T ss_pred             c---CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCC
Confidence            2   33456788999999988876543   379999998887643 43334467788999986

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.52  E-value=1.9e-10  Score=94.10  Aligned_cols=200  Identities=15%  Similarity=0.169  Sum_probs=143.2

Q ss_pred             CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC----------CCcEEEEcCCCCceEEEEecCCC------
Q 022910           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL----------DGLVQIWDPSSGNLKCTLEGPGG------  150 (290)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~------  150 (290)
                      ++|.+.|..+++.+..+.....+- .+ ++|+++.|+++..          +..|.+||+.+.+.+..+.....      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            899999999999988887544443 35 9999998777755          78999999999999988875322      


Q ss_pred             -CEEEEEEcCCCCEEEEee-C-CCeEEEEECCcccEEEeeecCC-------------------------------CCeEE
Q 022910          151 -GVEWVSWHPRGHIVLAGS-E-DSTVWMWNADRAAYLNMFSGHG-------------------------------SSVTC  196 (290)
Q Consensus       151 -~i~~i~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~-------------------------------~~i~~  196 (290)
                       ....++++|+|++|++.. . +..|.++|+.+++.+..+....                               ..+..
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence             234789999999999876 3 6889999999877654332100                               00111


Q ss_pred             E--------------EEcC-CCCEEEEEeCCCeEEEEcCCCC-----eeeEEEeCC----CCcccCeEEEEEcCCCCEEE
Q 022910          197 G--------------DFTP-DGKTICTGSDDATLRVWNPKSG-----ENIHVIRGH----PYHTEGLTCLTISADSTLAL  252 (290)
Q Consensus       197 ~--------------~~~~-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~  252 (290)
                      .              .|.+ +++++++... |.|++.|+...     .....+...    ......+.-++++|+++.++
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence            1              1233 7777777766 99999996432     222222211    11344555699999999888


Q ss_pred             EEe----------CCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          253 SGS----------KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       253 ~~~----------~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +..          ..+.|.++|+.+++.+..+.. ...+.+|+++|||
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dg  310 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDA  310 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCC
Confidence            853          125799999999999999986 4689999999986

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=4.5e-14  Score=116.89  Aligned_cols=211  Identities=20%  Similarity=0.318  Sum_probs=152.2

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-------CeeeeeeccccCCEEEEEECCCCCEEEE
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-------GDWASEIQGHKDSVSSLAFSMDGQLLAS  124 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~  124 (290)
                      ...-.++.+.||+..|..++--. +.+-+++++.|.+|++|.++.       ..+..+++.|+.+|.++.|..+.+++++
T Consensus       723 ~~~irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S  801 (1034)
T KOG4190|consen  723 FDHIRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS  801 (1034)
T ss_pred             cceeeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee
Confidence            34456788999999999988665 667788999999999999864       2366778899999999999998888876


Q ss_pred             EeCCCcEEEEcCCCCceEEEEec--CCCCEEEEEEcC--CCCEEEEe-eCCCeEEEEECCcccEEEeee-----cCCCCe
Q 022910          125 GGLDGLVQIWDPSSGNLKCTLEG--PGGGVEWVSWHP--RGHIVLAG-SEDSTVWMWNADRAAYLNMFS-----GHGSSV  194 (290)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~i  194 (290)
                      +  ||-|.+||.--++++..+..  ..+.+..+..-+  +...++.| +...+|+++|.+.......++     +.+..+
T Consensus       802 c--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~  879 (1034)
T KOG4190|consen  802 C--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT  879 (1034)
T ss_pred             c--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence            6  78899999887776653321  122233333323  33344444 678999999999887655443     345678


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE-EEcCCCc
Q 022910          195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM-VNITTGK  269 (290)
Q Consensus       195 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~-wd~~~~~  269 (290)
                      ++++..|.|++++++-..|.|.+.|.++|+.+..++..   ....-.++ .|..+.|+....|.++.+ |..-.+.
T Consensus       880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm---ecdllqla-apsdq~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  880 RAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM---ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             eEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc---cchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence            99999999999999999999999999999987766542   22222222 344556666666666666 6554443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.2e-10  Score=98.89  Aligned_cols=210  Identities=10%  Similarity=0.038  Sum_probs=135.4

Q ss_pred             CEEEEEECCCCCcEEEE-ecC--CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe-C--CCcEEEEcCCCC
Q 022910           66 EVYSVACSPTDATLVAT-GGG--DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-L--DGLVQIWDPSSG  139 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~-~~~--dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--dg~i~i~d~~~~  139 (290)
                      .+....|+|++..+++. ...  ...|.++++.+++...... ..+......|+|+|+.|+... .  +..|.++++.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            77889999955543443 322  3569999998876554433 455567788999998776543 2  356888898877


Q ss_pred             ceEEEEecCCCCEEEEEEcCCCCEEEEeeCC-C--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC----
Q 022910          140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-S--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD----  212 (290)
Q Consensus       140 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----  212 (290)
                      +... +..+........|+|+|+.|+..+.. +  .|+++++.+++..+.... ...  ...|+|+|++|+..+..    
T Consensus       268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~  343 (419)
T PRK04043        268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNE  343 (419)
T ss_pred             cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcc
Confidence            6443 43333334456899999987776642 2  688899988775443322 111  24899999998766543    


Q ss_pred             -----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccCCCcEEEE
Q 022910          213 -----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECI  284 (290)
Q Consensus       213 -----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~i  284 (290)
                           ..|.+.|+.++.. ..+...    .......|+|||+.|+..+..+   .+.+.++. |.....+....+.|+..
T Consensus       344 ~~~~~~~I~v~d~~~g~~-~~LT~~----~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~p  417 (419)
T PRK04043        344 FGKNTFNLYLISTNSDYI-RRLTAN----GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQSI  417 (419)
T ss_pred             cCCCCcEEEEEECCCCCe-EECCCC----CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCCC
Confidence                 3788889987764 333321    1223578999999877665432   47777774 44444455445556554


Q ss_pred             EE
Q 022910          285 GF  286 (290)
Q Consensus       285 ~~  286 (290)
                      +|
T Consensus       418 ~W  419 (419)
T PRK04043        418 DW  419 (419)
T ss_pred             CC
Confidence            44

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.49  E-value=1.2e-11  Score=94.81  Aligned_cols=218  Identities=15%  Similarity=0.172  Sum_probs=149.9

Q ss_pred             CcCEEEEEECC--CCCc-EEEEecCCCcEEEEEccCCeeeeeecccc------CCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910           64 SDEVYSVACSP--TDAT-LVATGGGDDKGFFWRINQGDWASEIQGHK------DSVSSLAFSMDGQLLASGGLDGLVQIW  134 (290)
Q Consensus        64 ~~~v~~~~~~~--~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (290)
                      +..+..+.|..  .++. .++-+-..|.|.+|..........+.+-.      ....++.|++.+..++++-.+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            34566666653  3343 56667778999999876544444333211      124578889999999999999999966


Q ss_pred             cCCCCceE--EEEecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCc-ccEEEe-eecCCCCeEEEEEcC-CCCEEEE
Q 022910          135 DPSSGNLK--CTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADR-AAYLNM-FSGHGSSVTCGDFTP-DGKTICT  208 (290)
Q Consensus       135 d~~~~~~~--~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~-~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~  208 (290)
                      +.....+.  +.++.|...++-..|+.. .+++++|+.|+.+..||+|. ++.+.. .+.|...|.+|.-+| .+.++++
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence            65555443  478889988988888764 46899999999999999993 333333 556889999998887 6789999


Q ss_pred             EeCCCeEEEEcCCC-CeeeEEEeCCCCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCC--c---EEEEEccCCCc
Q 022910          209 GSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTG--K---VVSSLVSHTDS  280 (290)
Q Consensus       209 ~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~--~---~~~~~~~~~~~  280 (290)
                      |+.|-.|++||.|+ ++++..-.    ..++|+.+.++|.  +.+|+++-..| .+|.+...+  +   .+...+.|.+-
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~~~----v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl  303 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFKAK----VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSL  303 (339)
T ss_pred             eccccceeeeehhcccCccccCc----cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccce
Confidence            99999999999994 44443333    4688999999993  34455444444 566665543  2   33444555554


Q ss_pred             EEEEEE
Q 022910          281 IECIGF  286 (290)
Q Consensus       281 v~~i~~  286 (290)
                      +.+-.|
T Consensus       304 ~YG~DW  309 (339)
T KOG0280|consen  304 CYGGDW  309 (339)
T ss_pred             eecccc
Confidence            444433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.48  E-value=5.8e-10  Score=88.54  Aligned_cols=211  Identities=17%  Similarity=0.194  Sum_probs=146.1

Q ss_pred             EEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEEC-CCCCEEEEEeCCCcEEEEcCCCCceEEEEec
Q 022910           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (290)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (290)
                      ++.|.+..+.++++.-..+.|..|+..+++... +....  ...+++. +++ .|+.+... .+.++|+.+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeec
Confidence            567888678888888889999999998876543 22111  6677777 564 45555544 466669988866544443


Q ss_pred             -----CCCCEEEEEEcCCCCEEEEeeCC--------CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE-EEeCCC
Q 022910          148 -----PGGGVEWVSWHPRGHIVLAGSED--------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDA  213 (290)
Q Consensus       148 -----~~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg  213 (290)
                           .....+.+++.|+|++.++....        |.|+.++.. ++...... .-.....|+|+|+++.|+ +-+..+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence                 33468899999999977776543        568888877 44333333 345678999999998776 566788


Q ss_pred             eEEEEcCCCCee----eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEe
Q 022910          214 TLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS  287 (290)
Q Consensus       214 ~i~i~d~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s  287 (290)
                      .|..|++.....    ...+............+++..+|+++++....+.|.+++.. |+++..+......+++++|.
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence            899999853221    12222211122347889999999998888889999999976 99999888766689999994

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.48  E-value=2.1e-12  Score=101.03  Aligned_cols=212  Identities=15%  Similarity=0.234  Sum_probs=148.6

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-----eeeeeccc------------cCCEEEEEECCCCC--EEEE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGH------------KDSVSSLAFSMDGQ--LLAS  124 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~------------~~~i~~~~~~~~~~--~l~~  124 (290)
                      .+-|.++.|.. .|.+||||..+|.|.+|.-....     ....++.|            ...|..+.|.++++  .++.
T Consensus        25 adiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   25 ADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hcceeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            45688999998 88999999999999999765432     22233333            34688999998665  6777


Q ss_pred             EeCCCcEEEEcCCCCce-----------------------------------EEEE-ecCCCCEEEEEEcCCCCEEEEee
Q 022910          125 GGLDGLVQIWDPSSGNL-----------------------------------KCTL-EGPGGGVEWVSWHPRGHIVLAGS  168 (290)
Q Consensus       125 ~~~dg~i~i~d~~~~~~-----------------------------------~~~~-~~~~~~i~~i~~~~~~~~l~~~~  168 (290)
                      .+.|.+|++|.+.....                                   .+.+ .+|...|.++.++.+...++++.
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD  183 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD  183 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence            78899999998743210                                   0111 34667789999999888888765


Q ss_pred             CCCeEEEEECCccc-E--EEeeecC-----CCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCeee----EEEeC--CC
Q 022910          169 EDSTVWMWNADRAA-Y--LNMFSGH-----GSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENI----HVIRG--HP  233 (290)
Q Consensus       169 ~dg~i~i~d~~~~~-~--~~~~~~~-----~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~--~~  233 (290)
                       |-.|.+|+++-.. .  +--++++     ..-|++..|+| ..+.|+-++..|+|++-|++....-    ..+..  .+
T Consensus       184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence             5789999987432 1  2222222     34588999999 5677888889999999999843211    11110  00


Q ss_pred             -------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCcEEEEEccCC
Q 022910          234 -------YHTEGLTCLTISADSTLALSGSKDGSVHMVNI-TTGKVVSSLVSHT  278 (290)
Q Consensus       234 -------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~  278 (290)
                             .--+.|..+.|++.|+|+++-.. -+|++||+ ...+++.+++.|.
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~  314 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHE  314 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehH
Confidence                   12346888999999999997654 48999999 5677888887763

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=1e-11  Score=105.94  Aligned_cols=220  Identities=15%  Similarity=0.262  Sum_probs=161.4

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---------------eeeeeccccCCEEEEEECCCCCEEEEEeCC
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------------WASEIQGHKDSVSSLAFSMDGQLLASGGLD  128 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  128 (290)
                      .....|++|+. ...++|+|+.||.+++..+.+..               ...++.+|...|.-+.|+.+.+.|-+...+
T Consensus        14 nvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            45678999998 77899999999999999886521               223467899999999999999999999999


Q ss_pred             CcEEEEcCCCCceEEEE--ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE----------------------
Q 022910          129 GLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL----------------------  184 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------------------  184 (290)
                      |.|.+|-+-.+.....+  ....+-|.+|+|+.+|..++....||.|.+=.+...+.-                      
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence            99999998777544322  224556889999999999888888887766544332110                      


Q ss_pred             ------------------------------EeeecCCCCeEEEEEc--------CCCCEEEEEeCCCeEEEEcCCCCeee
Q 022910          185 ------------------------------NMFSGHGSSVTCGDFT--------PDGKTICTGSDDATLRVWNPKSGENI  226 (290)
Q Consensus       185 ------------------------------~~~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~  226 (290)
                                                    ..+......|..+.|.        |+...|+++...|.+.+..-.+....
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence                                          0001112234455553        35677888888888888765555544


Q ss_pred             EEEeCCCCcccCeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          227 HVIRGHPYHTEGLTCLTISADSTLALSGSKD---------GSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      ..+.    ....+....|+++|.+|++++.+         +.|.+|. .-|+.+.+++.....|++++|-..
T Consensus       253 vv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~  319 (1189)
T KOG2041|consen  253 VVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGT  319 (1189)
T ss_pred             eEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCC
Confidence            4554    34668889999999999998864         2566665 468889999988899999999643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.46  E-value=1.6e-12  Score=114.59  Aligned_cols=147  Identities=22%  Similarity=0.361  Sum_probs=126.2

Q ss_pred             ECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE-EEecCCC
Q 022910           72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGPGG  150 (290)
Q Consensus        72 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~  150 (290)
                      +++ ..-++++|+.-+.|.+|+....+....+.+|.+.|..+.|+.+|+++++.|.|.++++|.+.+.+... ..-+|..
T Consensus       141 ~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa  219 (967)
T KOG0974|consen  141 DSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA  219 (967)
T ss_pred             ccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence            344 56788899999999999998555455688999999999999999999999999999999999987765 5567999


Q ss_pred             CEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910          151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (290)
Q Consensus       151 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  222 (290)
                      .+..++|+|+  .+++++.|.+.++|... +..+..+..|. ..|..++..+..-.+++++.||.+++|++..
T Consensus       220 Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  220 RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9999999988  99999999999999765 34444666654 5789999999999999999999999999864

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.43  E-value=3.6e-10  Score=105.90  Aligned_cols=202  Identities=11%  Similarity=0.097  Sum_probs=137.5

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccc-----------------cCCEEEEEECC-CCCEEEEEeCC
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-----------------KDSVSSLAFSM-DGQLLASGGLD  128 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~~~~~d  128 (290)
                      ...+++.++++.++++-..++.|+++++.++.. .++.+-                 -..-..++|+| ++..+++.+.+
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            477888884444555555667899999877543 222110                 11336799999 55566676778


Q ss_pred             CcEEEEcCCCCceEEEEecC---------------CCCEEEEEEcCCCCEEE-EeeCCCeEEEEECCcccEEEeeec---
Q 022910          129 GLVQIWDPSSGNLKCTLEGP---------------GGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAYLNMFSG---  189 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~---------------~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~---  189 (290)
                      +.|++|+..++... .+.+.               ......|+++|++..|+ +-+.++.|++||+.++.......+   
T Consensus       705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~  783 (1057)
T PLN02919        705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT  783 (1057)
T ss_pred             CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence            99999998876543 22111               12356799999988554 555678999999987643211100   


Q ss_pred             ------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCC----------CCcccCeEE
Q 022910          190 ------------------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH----------PYHTEGLTC  241 (290)
Q Consensus       190 ------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~~~v~~  241 (290)
                                        .-.....++++++|+++++-+.++.|++||..++.........          ...-.....
T Consensus       784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G  863 (1057)
T PLN02919        784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG  863 (1057)
T ss_pred             cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence                              0113468899999998888899999999999877654332210          001235678


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 022910          242 LTISADSTLALSGSKDGSVHMVNITTGKV  270 (290)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  270 (290)
                      ++++++|+++++-+.++.|++||+.+++.
T Consensus       864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        864 LALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            99999999999888999999999988765

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.42  E-value=2.5e-11  Score=95.14  Aligned_cols=158  Identities=18%  Similarity=0.353  Sum_probs=124.7

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccC----CeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC---
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP---  136 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~---  136 (290)
                      ..+++++.+.+ ....|++|-..|++.-+.+..    ....+....|..++..+.|+....++++.+.|..+.---.   
T Consensus        68 P~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~  146 (404)
T KOG1409|consen   68 PSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG  146 (404)
T ss_pred             CCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence            46788999998 778888999999999887653    3445556678888888888877777777766643322111   


Q ss_pred             --------------------------------------CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEEC
Q 022910          137 --------------------------------------SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA  178 (290)
Q Consensus       137 --------------------------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~  178 (290)
                                                            ..-.++.++.+|.+.+.+++|.|....|++|..|..+.+||+
T Consensus       147 ~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi  226 (404)
T KOG1409|consen  147 NRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDI  226 (404)
T ss_pred             CcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEec
Confidence                                                  112345667889999999999999999999999999999999


Q ss_pred             Cccc-EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910          179 DRAA-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (290)
Q Consensus       179 ~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  222 (290)
                      -..+ ....+.+|...|..+...+--+.+++++.||.|.+|+++.
T Consensus       227 gg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  227 GGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             cCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            7654 3456678999999999888888999999999999999864

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.42  E-value=1.3e-11  Score=96.70  Aligned_cols=214  Identities=17%  Similarity=0.291  Sum_probs=157.1

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-Ceeeeeec-cccCCEEEEEECCCCCEEEEEeCCC
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      ..+..++.++||.+.|++...-| ...-+++.+.|.+++||--.. ++.-..+. .-..+++++.+.+....|++|-..|
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng   90 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG   90 (404)
T ss_pred             cchhhhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc
Confidence            34567788999999999999888 555567999999999996443 33222222 2346789999999999999999999


Q ss_pred             cEEEEcCC----CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEE-------------------------------
Q 022910          130 LVQIWDPS----SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW-------------------------------  174 (290)
Q Consensus       130 ~i~i~d~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~-------------------------------  174 (290)
                      ++.-+.+.    .....+.+..|...+..+-|+....++++.+.|..+.                               
T Consensus        91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fv  170 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFV  170 (404)
T ss_pred             eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEe
Confidence            99888653    3344445556667777777666555666555544332                               


Q ss_pred             --------EEEC--CcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeee-EEEeCCCCcccCeEEEE
Q 022910          175 --------MWNA--DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLT  243 (290)
Q Consensus       175 --------i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~  243 (290)
                              +..+  ....++.++.+|...+++++|.|....|++|..|..+.+||+--.+-+ ..+.+   |...|..+.
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g---h~~kV~~l~  247 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG---HNDKVQALS  247 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc---chhhhhhhh
Confidence                    2211  112346677889999999999999999999999999999999654432 22333   777888888


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCc
Q 022910          244 ISADSTLALSGSKDGSVHMVNITTGK  269 (290)
Q Consensus       244 ~~~~~~~l~~~~~dg~i~~wd~~~~~  269 (290)
                      ..+--+.|.+++.||.|.+|+.+..+
T Consensus       248 ~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  248 YAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhhheeeeeccCCCeEEEEecccee
Confidence            88878899999999999999987543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1.7e-10  Score=95.79  Aligned_cols=213  Identities=13%  Similarity=0.156  Sum_probs=145.0

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe-----C-----CCcEEEE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-----L-----DGLVQIW  134 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~-----dg~i~i~  134 (290)
                      .+++..++++ +++++|.+. +..++|++...+..+......  .++++.|+|-+.+|.+--     .     .-.+.+|
T Consensus        35 ~~~~v~~~S~-~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~  110 (566)
T KOG2315|consen   35 RPCNVFAYSN-NGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY  110 (566)
T ss_pred             CcceeEEEcC-CCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence            3467778888 888887654 688999999988655544422  789999999999887631     1     2346788


Q ss_pred             cCCCCceEEE----------------------------------------EecCCCCEEEEEEcCCC--CEEEE-----e
Q 022910          135 DPSSGNLKCT----------------------------------------LEGPGGGVEWVSWHPRG--HIVLA-----G  167 (290)
Q Consensus       135 d~~~~~~~~~----------------------------------------~~~~~~~i~~i~~~~~~--~~l~~-----~  167 (290)
                      ++.++.....                                        -+.|...|+.+.++|.+  ..+|+     .
T Consensus       111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k  190 (566)
T KOG2315|consen  111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKK  190 (566)
T ss_pred             eeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCC
Confidence            8776322111                                        01234456777777752  23332     2


Q ss_pred             eCCCeEEEEECCcc---------------------------------------------------------cEEEeeecC
Q 022910          168 SEDSTVWMWNADRA---------------------------------------------------------AYLNMFSGH  190 (290)
Q Consensus       168 ~~dg~i~i~d~~~~---------------------------------------------------------~~~~~~~~~  190 (290)
                      +.-+.++||...-.                                                         ...-. -..
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~-L~k  269 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP-LLK  269 (566)
T ss_pred             CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-cCC
Confidence            33455666654310                                                         00000 013


Q ss_pred             CCCeEEEEEcCCCCEEEE--EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEEc
Q 022910          191 GSSVTCGDFTPDGKTICT--GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNI  265 (290)
Q Consensus       191 ~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~  265 (290)
                      .++|.++.|+|+++-|++  |..-..+.|||++ +.++..+     ..++-+++-|+|.|++|+.+|-   -|.|-|||+
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-----~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-----PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC-----CCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence            689999999999987765  5567889999997 4555544     3567788999999999988876   479999999


Q ss_pred             CCCcEEEEEccCCCcEEEEEEecCC
Q 022910          266 TTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       266 ~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .+.+++.++....  -+-+.|+|||
T Consensus       344 ~n~K~i~~~~a~~--tt~~eW~PdG  366 (566)
T KOG2315|consen  344 PNRKLIAKFKAAN--TTVFEWSPDG  366 (566)
T ss_pred             cchhhccccccCC--ceEEEEcCCC
Confidence            9999999998743  4456799997

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.39  E-value=2.5e-10  Score=86.80  Aligned_cols=222  Identities=14%  Similarity=0.095  Sum_probs=148.3

Q ss_pred             EEEEECCC----CCcEEEEecCCCcEEEEEccCCeeeeee-ccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCce
Q 022910           68 YSVACSPT----DATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL  141 (290)
Q Consensus        68 ~~~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~  141 (290)
                      ..+.|.|.    .--+||.|+..|...+|...+.+....+ ..|...|+-+.=.-+ ..-+..++.|.++++.++..+..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            34666662    2247889999999999999876543332 334333322211112 22466778888888888776544


Q ss_pred             EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-E-EE-eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 022910          142 KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-Y-LN-MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW  218 (290)
Q Consensus       142 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~-~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  218 (290)
                      ...+....-...+++++++++++++.+....|..|.+.... . ++ ........-.+..|+.....+|++.+||++.||
T Consensus       151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~  230 (344)
T KOG4532|consen  151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY  230 (344)
T ss_pred             cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence            33332222337889999999999999999999999987542 2 22 222334455678899999999999999999999


Q ss_pred             cCCCCeeeEEE--eCCCCcccCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcEEEEEcc-------CC-CcEEEEEE
Q 022910          219 NPKSGENIHVI--RGHPYHTEGLTCLTISADST--LALSGSKDGSVHMVNITTGKVVSSLVS-------HT-DSIECIGF  286 (290)
Q Consensus       219 d~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~-------~~-~~v~~i~~  286 (290)
                      |++....+...  ...+.|.+.+..+.|++.|.  +|+..-.-+.+.+.|+++++..+.+..       |. ..|.+..|
T Consensus       231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f  310 (344)
T KOG4532|consen  231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNF  310 (344)
T ss_pred             EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccc
Confidence            99976543222  22233889999999998553  566665678999999999876555432       22 23666666


Q ss_pred             ecC
Q 022910          287 SRS  289 (290)
Q Consensus       287 s~d  289 (290)
                      +.+
T Consensus       311 ~~~  313 (344)
T KOG4532|consen  311 NNE  313 (344)
T ss_pred             cCC
Confidence            543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.37  E-value=1.3e-11  Score=96.70  Aligned_cols=202  Identities=15%  Similarity=0.272  Sum_probs=141.7

Q ss_pred             cCEEEEEECCCC-CcEEEEecCCCcEEEEEccCCeeee-----------------------------------e-ecccc
Q 022910           65 DEVYSVACSPTD-ATLVATGGGDDKGFFWRINQGDWAS-----------------------------------E-IQGHK  107 (290)
Q Consensus        65 ~~v~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~-----------------------------------~-~~~~~  107 (290)
                      ..|..+.|.+++ ...++..+.|.+|++|.+.......                                   . -..|.
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            478899998853 3466677889999999875321100                                   0 03578


Q ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE---EEEecC-----CCCEEEEEEcCC-CCEEEEeeCCCeEEEEEC
Q 022910          108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK---CTLEGP-----GGGVEWVSWHPR-GHIVLAGSEDSTVWMWNA  178 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~-----~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~  178 (290)
                      ..|.++.++.+...++++. |=.|.+|+++-...-   .-++.+     ..-|++..|||. .++|+-++..|+|++.|+
T Consensus       165 yhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm  243 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM  243 (433)
T ss_pred             eEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence            8899999999999888865 678999998643221   222222     235788899995 567888888999999999


Q ss_pred             CcccEE----E------------eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC-CCCeeeEEEeCCCCcc-----
Q 022910          179 DRAAYL----N------------MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP-KSGENIHVIRGHPYHT-----  236 (290)
Q Consensus       179 ~~~~~~----~------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~-----  236 (290)
                      |....-    +            -+..--..|..+.|++.|+++++-.. -+|++||+ ...+++.+++.+....     
T Consensus       244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~  322 (433)
T KOG1354|consen  244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCS  322 (433)
T ss_pred             hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence            854211    1            11122356889999999999988653 58999999 4455666665433211     


Q ss_pred             ----cC---eEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910          237 ----EG---LTCLTISADSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       237 ----~~---v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                          ..   -..++|+.++.+++||+....++++++..|
T Consensus       323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                11   245789988999999999999999996544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.37  E-value=5.2e-09  Score=83.01  Aligned_cols=228  Identities=15%  Similarity=0.219  Sum_probs=150.6

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecC---CCcEEEEEccC--Ceeee--eeccccCCEEEEEECCCCCEEEEEeC-CCcEEE
Q 022910           62 GHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQ--GDWAS--EIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQI  133 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i  133 (290)
                      .+.+..+-|+|+| +++.|+++-.   .|.|--|.+..  |++..  .......+-..+++++++++++++.. .|.|.+
T Consensus        37 ~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v  115 (346)
T COG2706          37 AELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV  115 (346)
T ss_pred             cccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence            4566788899999 6666666543   57788887775  44322  22222334478999999999888865 689999


Q ss_pred             EcCCC-CceEE--EEecCCCC----------EEEEEEcCCCCEEEEeeC-CCeEEEEECCcccEEEee---ecCCCCeEE
Q 022910          134 WDPSS-GNLKC--TLEGPGGG----------VEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMF---SGHGSSVTC  196 (290)
Q Consensus       134 ~d~~~-~~~~~--~~~~~~~~----------i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~---~~~~~~i~~  196 (290)
                      +-+.. |.+..  ....|.++          +.+..+.|++++|++.+- .-.|.+|++..++....-   -......+.
T Consensus       116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH  195 (346)
T COG2706         116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH  195 (346)
T ss_pred             EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence            99865 43221  12224443          788999999999888765 346999999877543211   135567799


Q ss_pred             EEEcCCCCEEEEEeC-CCeEEEEcCCCC-eeeEEEeC---CC---CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 022910          197 GDFTPDGKTICTGSD-DATLRVWNPKSG-ENIHVIRG---HP---YHTEGLTCLTISADSTLALSGSK-DGSVHMVNITT  267 (290)
Q Consensus       197 ~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~---~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~  267 (290)
                      |.|+|++++.++.+. +++|.+|..... ..+..++.   .+   ........+.++|+|++|+++.. ...|.+|.+..
T Consensus       196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            999999999876654 899999988763 22222222   11   13456778899999999998854 34788887753


Q ss_pred             --CcE--EEEEccCCCcEEEEEEecCC
Q 022910          268 --GKV--VSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       268 --~~~--~~~~~~~~~~v~~i~~s~d~  290 (290)
                        +++  +.....+....+.+.|+|+|
T Consensus       276 ~~g~L~~~~~~~teg~~PR~F~i~~~g  302 (346)
T COG2706         276 DGGKLELVGITPTEGQFPRDFNINPSG  302 (346)
T ss_pred             CCCEEEEEEEeccCCcCCccceeCCCC
Confidence              322  22222333346677776654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.37  E-value=4.6e-09  Score=83.31  Aligned_cols=220  Identities=16%  Similarity=0.264  Sum_probs=145.8

Q ss_pred             EEEEECCCCCcEEEEecCCCcEEEEEccC-Ceeee--eeccccCC----------EEEEEECCCCCEEEEEeC-CCcEEE
Q 022910           68 YSVACSPTDATLVATGGGDDKGFFWRINQ-GDWAS--EIQGHKDS----------VSSLAFSMDGQLLASGGL-DGLVQI  133 (290)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~--~~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg~i~i  133 (290)
                      +.+++++++..++.+-...|.|.++-++. |.+..  .+..|.++          +....|.|++++|++..- --.|.+
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~  171 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL  171 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence            77888884444444445568999999865 33222  12234444          889999999999888754 246999


Q ss_pred             EcCCCCceEEEEe---cCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCcc-cEEEeeec---------CCCCeEEEEE
Q 022910          134 WDPSSGNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRA-AYLNMFSG---------HGSSVTCGDF  199 (290)
Q Consensus       134 ~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~---------~~~~i~~~~~  199 (290)
                      |++..+++...-.   ......+.|.|+|++++.++.+. +++|.+|..... ..+..++.         .......|.+
T Consensus       172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi  251 (346)
T COG2706         172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI  251 (346)
T ss_pred             EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence            9999776542211   34556899999999998887765 889999998763 22222211         2446788999


Q ss_pred             cCCCCEEEEEeC-CCeEEEEcCCCC-eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEEcC--CCcEEEEE
Q 022910          200 TPDGKTICTGSD-DATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNIT--TGKVVSSL  274 (290)
Q Consensus       200 ~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~--~~~~~~~~  274 (290)
                      +|+|++|+++.. ...|.+|.+... ..+..+.....+........|+|.+++|+++..++ .|.+|.+.  +|++-...
T Consensus       252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~  331 (346)
T COG2706         252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLG  331 (346)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence            999999988754 235777765432 22333333333455578899999999999988754 67777654  55544333


Q ss_pred             c-cCCCcEEEEEEe
Q 022910          275 V-SHTDSIECIGFS  287 (290)
Q Consensus       275 ~-~~~~~v~~i~~s  287 (290)
                      . .......||.|.
T Consensus       332 ~~~~~p~Pvcv~f~  345 (346)
T COG2706         332 RYAVVPEPVCVKFL  345 (346)
T ss_pred             cccCCCCcEEEEEc
Confidence            3 233456677765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1.1e-09  Score=93.14  Aligned_cols=172  Identities=12%  Similarity=0.111  Sum_probs=116.1

Q ss_pred             CEEEEEECCCCCE-EEEEeC---CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee-C--CCeEEEEECCcc
Q 022910          109 SVSSLAFSMDGQL-LASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-E--DSTVWMWNADRA  181 (290)
Q Consensus       109 ~i~~~~~~~~~~~-l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~--dg~i~i~d~~~~  181 (290)
                      .+....|+|+|+. ++..+.   ...|+++|+.+++...... ..+......|+|+|+.++... .  +..|+++++.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            7788999999985 665443   3569999998887655443 455567788999998776543 2  357888998877


Q ss_pred             cEEEeeecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-
Q 022910          182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-  257 (290)
Q Consensus       182 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-  257 (290)
                      .. +.+..+........|+|+|+.|+..+. .+  .|+++|+.+++..+....    ..  ....|+|+|++|+..+.. 
T Consensus       268 ~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----g~--~~~~~SPDG~~Ia~~~~~~  340 (419)
T PRK04043        268 TL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----GK--NNSSVSTYKNYIVYSSRET  340 (419)
T ss_pred             cE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC----CC--cCceECCCCCEEEEEEcCC
Confidence            64 344433333345679999988876553 23  688889987765333321    11  124899999988776653 


Q ss_pred             --------CcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          258 --------GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       258 --------g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                              ..|.+.++.++.. +.+... .......|+|||
T Consensus       341 ~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG  379 (419)
T PRK04043        341 NNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDG  379 (419)
T ss_pred             CcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCC
Confidence                    3688889887764 444432 233468899987

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.34  E-value=3.6e-09  Score=99.38  Aligned_cols=220  Identities=15%  Similarity=0.200  Sum_probs=145.2

Q ss_pred             EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc--------------ccCCEEEEEECCCCCEEEEEe-CCCcEE
Q 022910           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--------------HKDSVSSLAFSMDGQLLASGG-LDGLVQ  132 (290)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~-~dg~i~  132 (290)
                      ..+++++.++.++++-+.++.|++|+... ..+..+..              .-.....+++.++++.|+++. ..+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788876677888888889999999764 33333321              112357899998888666654 457899


Q ss_pred             EEcCCCCceEEEEecC-----------------CCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEeeec-----
Q 022910          133 IWDPSSGNLKCTLEGP-----------------GGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSG-----  189 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~-----------------~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----  189 (290)
                      ++|+.++.. .++.+.                 -.....++++| ++.++++.+.++.|++|+..++... .+.+     
T Consensus       650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            999877653 333210                 11346799999 5666677777899999998776532 2211     


Q ss_pred             ----------CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEcCCCCeeeEEEeCCC------------------CcccCeE
Q 022910          190 ----------HGSSVTCGDFTPDGKTI-CTGSDDATLRVWNPKSGENIHVIRGHP------------------YHTEGLT  240 (290)
Q Consensus       190 ----------~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------~~~~~v~  240 (290)
                                .-.....|+++|+++.| ++-+.++.|++||+.++.......+..                  ..-....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                      11245679999998855 455667899999998765322111000                  0011346


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-------------cCCCcEEEEEEecCC
Q 022910          241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-------------SHTDSIECIGFSRSE  290 (290)
Q Consensus       241 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------~~~~~v~~i~~s~d~  290 (290)
                      .++++++|.++++-+.+++|++||..++.......             +.-....+|+++++|
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG  870 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG  870 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence            88999999998888899999999998776553321             111256788888875

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.33  E-value=8.9e-10  Score=90.18  Aligned_cols=176  Identities=19%  Similarity=0.242  Sum_probs=137.0

Q ss_pred             ECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC-cEEEEcCCCCceEEEEecCCC
Q 022910           72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-LVQIWDPSSGNLKCTLEGPGG  150 (290)
Q Consensus        72 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~  150 (290)
                      |++.++.+++..+. |...|.+...+-.+. + ++.+.|.-..+..+++-++.|..|| .|-|++..+++.. .+...-+
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg  402 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLG  402 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCcc
Confidence            45556777777764 788888766554333 2 3677798888888888999999999 8999999887744 5555677


Q ss_pred             CEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEcCCCCeee
Q 022910          151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA----TLRVWNPKSGENI  226 (290)
Q Consensus       151 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~  226 (290)
                      .|.++..+|+|++++++.....|.++|+.++.....-+...+-|+.++|+|+++++|-+--+|    .|++||+.+++..
T Consensus       403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence            899999999999999999999999999999987666666778899999999999999876555    6999999887764


Q ss_pred             EEEeCCCCcccCeEEEEEcCCCCEEEEEe
Q 022910          227 HVIRGHPYHTEGLTCLTISADSTLALSGS  255 (290)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (290)
                      ....    ....=.+-+|.|++++|.--+
T Consensus       483 ~vTT----~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         483 DVTT----PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EecC----CcccccCcccCCCCcEEEEEe
Confidence            4333    223334567889999876543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.32  E-value=1.9e-09  Score=88.33  Aligned_cols=123  Identities=15%  Similarity=0.202  Sum_probs=102.8

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCC-cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDD-KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      -+|.+.|.-..+.. ++.-++.|..|| .+-||+..+++... +...-+.|.++..+++|++++++.....|.+.|+.++
T Consensus       356 v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng  433 (668)
T COG4946         356 VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG  433 (668)
T ss_pred             cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence            35777888888877 555788899999 89999998877544 4446788999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCC----eEEEEECCcccEEE
Q 022910          140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS----TVWMWNADRAAYLN  185 (290)
Q Consensus       140 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~  185 (290)
                      .....-+...+-|+.++|||+++++|-+--+|    .|+++|+.+++...
T Consensus       434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            98777677778899999999999999876655    69999998876543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.32  E-value=1.2e-10  Score=101.88  Aligned_cols=183  Identities=16%  Similarity=0.211  Sum_probs=138.6

Q ss_pred             CcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEE
Q 022910           77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS  156 (290)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~  156 (290)
                      +..++.|+....+..+|+.+.+......-..+.|+-|+.  +++++.+|...|+|.+-|.++.+.++++..|.+.|..+.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            344556666667777888877766665544445655554  788999999999999999999999999999999888776


Q ss_pred             EcCCCCEEEEeeC---------CCeEEEEECCcccEEEeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEcCCCCe-e
Q 022910          157 WHPRGHIVLAGSE---------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGE-N  225 (290)
Q Consensus       157 ~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~  225 (290)
                      .  .|+.|++++.         |..|+|||+|..+.+.-+.-+.++ .-+.|+|. ...+++++..|...+-|..+.. +
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP  301 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP  301 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence            5  6889998875         456899999988877666544444 66788883 4678888999999999943221 1


Q ss_pred             -eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          226 -IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       226 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                       .......+ ..+.+..++++++++.|+.|..+|.|.+|--
T Consensus       302 ~~~~~~v~p-~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  302 PAGVKMVNP-NGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ccceeEEcc-CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence             12222111 4566999999999999999999999999973

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.31  E-value=1.5e-09  Score=100.15  Aligned_cols=223  Identities=12%  Similarity=0.151  Sum_probs=150.6

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEE----EccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFW----RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (290)
                      ...+.|.++.|.+ +...++.+..+|.|.++    +..... +.....-...|.+++||||+..|+.++.+++|.+....
T Consensus        73 ~~~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~  150 (928)
T PF04762_consen   73 DPNDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD  150 (928)
T ss_pred             CCCCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence            3457899999999 66666777888999999    444332 33333456789999999999999999999998887521


Q ss_pred             ---------------C--------CceEEEEec------------------------CCCCEEEEEEcCCCCEEEEeeC-
Q 022910          138 ---------------S--------GNLKCTLEG------------------------PGGGVEWVSWHPRGHIVLAGSE-  169 (290)
Q Consensus       138 ---------------~--------~~~~~~~~~------------------------~~~~i~~i~~~~~~~~l~~~~~-  169 (290)
                                     .        |+....|.+                        ....-..|+|-.||.++|+.+- 
T Consensus       151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence                           0        111111111                        1223456889999999999874 


Q ss_pred             --C---CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEcCCCCeeeEEEeCCC-CcccCeE
Q 022910          170 --D---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHP-YHTEGLT  240 (290)
Q Consensus       170 --d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~  240 (290)
                        .   ..|+||+-+ |....+.....+--.+++|.|.|++||+...   ...|.+|..+ |-....+.... .....|.
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~  308 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVI  308 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceee
Confidence              2   479999865 6555444444444567899999999988764   3567778754 43333333221 2456799


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCc--EEEEEcc-CCCcEEEEEEecC
Q 022910          241 CLTISADSTLALSGSKDGSVHMVNITTGK--VVSSLVS-HTDSIECIGFSRS  289 (290)
Q Consensus       241 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~-~~~~v~~i~~s~d  289 (290)
                      .+.|++++..||....|. |.+|-..+..  +-+.+.- ....+..+.|+|.
T Consensus       309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe  359 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE  359 (928)
T ss_pred             EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence            999999999999987665 9999988754  2222221 1234555888874

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.30  E-value=5.6e-11  Score=94.91  Aligned_cols=161  Identities=21%  Similarity=0.194  Sum_probs=112.6

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEcCCCCce----EEEEecCCCCEEEEEEcCCCCEEEEeeCCC---eEEEEECCccc
Q 022910          110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL----KCTLEGPGGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAA  182 (290)
Q Consensus       110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~  182 (290)
                      ...+..++.++++|++..+....++++.....    +..+.... .-+++.|..+......+...|   .+.+|....+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            34455678888999998888877777654432    22222222 234444444444455544444   45555555433


Q ss_pred             EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910          183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (290)
Q Consensus       183 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  262 (290)
                       ...+-+|-+-++.++|+|++++++++..|..|++-.......+..+..  +|..-|..++.-++ ..|++|+.|++|++
T Consensus       144 -~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  144 -CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             -cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence             344557889999999999999999999999999977765554444432  28888999998764 56899999999999


Q ss_pred             EEcCCCcEEEEEc
Q 022910          263 VNITTGKVVSSLV  275 (290)
Q Consensus       263 wd~~~~~~~~~~~  275 (290)
                      ||+.+|+++.++.
T Consensus       220 Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  220 WDITSGKLLDTCD  232 (390)
T ss_pred             EecccCCcccccc
Confidence            9999999887665

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.30  E-value=2.6e-11  Score=103.82  Aligned_cols=211  Identities=15%  Similarity=0.257  Sum_probs=151.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      ......+.||+..|+.+.|+|+.+..+++++.|-.+..||+.+.. .+.....-......++|+-....+.+.+..+.|+
T Consensus       104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~  183 (1081)
T KOG0309|consen  104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF  183 (1081)
T ss_pred             cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence            445667889999999999999999999999999999999998754 4444444455678899987666666677788999


Q ss_pred             EEcCCCC-ceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEE-EeeecCCCCeEEEEEcCCCC--EEE
Q 022910          133 IWDPSSG-NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYL-NMFSGHGSSVTCGDFTPDGK--TIC  207 (290)
Q Consensus       133 i~d~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~--~l~  207 (290)
                      +||++.+ .++..+++|...+..++|.. ....+.+++.||+|+.|+..+.... ........+|..-++.|-|.  ++.
T Consensus       184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~m  263 (1081)
T KOG0309|consen  184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIM  263 (1081)
T ss_pred             EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEec
Confidence            9999876 56788888888899998875 3447888999999999998765322 22223456777777777433  322


Q ss_pred             EEeCCCeEEEEcCCC----------CeeeEEEeCCCCcccCeEEEEEcCC----------CCEEEEEeCCCcEEEEEcCC
Q 022910          208 TGSDDATLRVWNPKS----------GENIHVIRGHPYHTEGLTCLTISAD----------STLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       208 ~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~~wd~~~  267 (290)
                      -.-.+..+.+++.++          .++++.+.+   |...|.-..|-..          .-.|+|-+.|..+++|-+.+
T Consensus       264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G---H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG---HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cccCCeeeeeccccchhhhhccccCCcceeeecC---cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            222222444444432          245666666   6666666555431          12689999999999998754

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=2.2e-10  Score=99.06  Aligned_cols=185  Identities=15%  Similarity=0.172  Sum_probs=135.1

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      ...++|++++.   ..|+-|+.+|.|++++....-  .+...|...      ...|.++++||.||+|.|-.+-+.+...
T Consensus        39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hhHHHHHHhhc---ceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            45777888764   688999999999999976433  333345444      6689999999999999999999888777


Q ss_pred             EEecCCCCEEEEEEcCC-----CCEEEEeeCCCeEEEEECCc--ccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910          144 TLEGPGGGVEWVSWHPR-----GHIVLAGSEDSTVWMWNADR--AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (290)
Q Consensus       144 ~~~~~~~~i~~i~~~~~-----~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  216 (290)
                      ++. ...++.+++++|+     .+.+++|+..| +.++.-+-  .+....+....++|.++.|.  |+++|-++.+| |+
T Consensus       108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~  182 (846)
T KOG2066|consen  108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK  182 (846)
T ss_pred             eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence            766 4457999999997     56899999988 77665321  11112455677899999995  77888887777 89


Q ss_pred             EEcCCCCeeeEEEeCCCC---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          217 VWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       217 i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      |||+.+.+.+..+.....   ...-...+.|.++.+ |+.| +..+|++..++
T Consensus       183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK  233 (846)
T ss_pred             EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence            999998887766654321   122345678886554 4444 44588888887

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.29  E-value=6.5e-11  Score=89.50  Aligned_cols=169  Identities=20%  Similarity=0.258  Sum_probs=111.0

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee-eeeeccccCCEEEEEECCCCCEEEEEeC----
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQGHKDSVSSLAFSMDGQLLASGGL----  127 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~----  127 (290)
                      ...+.+.+..|+++-.+-+.+- -..-++++..||.+.+++.+.-.. ..++..-...-.+.+....++.+.++..    
T Consensus        78 ~i~~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n  156 (319)
T KOG4714|consen   78 GIDPFKVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWN  156 (319)
T ss_pred             CcCceeeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEe
Confidence            3445555555655544444443 445688999999999999876211 1112111111222333344555554422    


Q ss_pred             -CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCccc-EEEeeecCCCCeEEEEEcC-CC
Q 022910          128 -DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTP-DG  203 (290)
Q Consensus       128 -dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~-~~  203 (290)
                       -+..++|+++..+.....+.....+++++-+|. .+.+++|+.+|.+.+||.+... +...+..|+.++..+-|+| ++
T Consensus       157 ~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p  236 (319)
T KOG4714|consen  157 AQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP  236 (319)
T ss_pred             eccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence             345667776654433332323345999999984 5578888999999999999874 4456778999999999999 77


Q ss_pred             CEEEEEeCCCeEEEEcCCC
Q 022910          204 KTICTGSDDATLRVWNPKS  222 (290)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~  222 (290)
                      ..|++++.||.+-.||..+
T Consensus       237 ~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  237 EHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hheeEecCCCcEEEEcCCC
Confidence            8999999999999999874

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.27  E-value=1.7e-10  Score=92.21  Aligned_cols=161  Identities=17%  Similarity=0.190  Sum_probs=113.0

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCee----eeeeccccCCEEEEEECCCCCEEEEEe---CCCcEEEEcCCC
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDW----ASEIQGHKDSVSSLAFSMDGQLLASGG---LDGLVQIWDPSS  138 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~  138 (290)
                      .+..+..++ ++.+||++..+....++++.....    ..... -...-+++.|..+......+.   ....+.+|....
T Consensus        64 a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~  141 (390)
T KOG3914|consen   64 APALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS  141 (390)
T ss_pred             cccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence            344455666 788888888777766776654332    22222 222334555555555444443   345566666665


Q ss_pred             CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 022910          139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-SGHGSSVTCGDFTPDGKTICTGSDDATLRV  217 (290)
Q Consensus       139 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  217 (290)
                      +... .+-+|-..++.++|+||+.+|+++..|..|++-.......+..+ -+|..-|..+++-++ ..|++++.|++|++
T Consensus       142 ~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  142 GRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             cCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence            4443 44578899999999999999999999999999887665555444 469999999999864 45899999999999


Q ss_pred             EcCCCCeeeEEEe
Q 022910          218 WNPKSGENIHVIR  230 (290)
Q Consensus       218 ~d~~~~~~~~~~~  230 (290)
                      ||+++++.+.++.
T Consensus       220 Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  220 WDITSGKLLDTCD  232 (390)
T ss_pred             EecccCCcccccc
Confidence            9999999876553

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.27  E-value=2.6e-11  Score=103.84  Aligned_cols=232  Identities=19%  Similarity=0.267  Sum_probs=157.6

Q ss_pred             CCCceeeeccC-CcCEEEEEECCCCC-cEEEEecCCCcEEEEEccC---CeeeeeeccccCCEEEEEECCCCC-EEEEEe
Q 022910           53 PDDSTHIFSGH-SDEVYSVACSPTDA-TLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDGQ-LLASGG  126 (290)
Q Consensus        53 ~~~~~~~~~~h-~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~  126 (290)
                      |..+.+.+..- .-.|-.+.|+|... .+-++......-.+|++..   ......+.+|...|+.+.|+|+.. .+++++
T Consensus        55 p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs  134 (1081)
T KOG0309|consen   55 PFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS  134 (1081)
T ss_pred             CCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc
Confidence            44444444322 23466788887422 2444444556677999865   344556778999999999998765 799999


Q ss_pred             CCCcEEEEcCCCCc-eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcC-CC
Q 022910          127 LDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DG  203 (290)
Q Consensus       127 ~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~  203 (290)
                      .|-.+..||+++.. ++..+..-......++|+.....+++.+....|.+||++.+ .++..+++|...|..++|.. ..
T Consensus       135 vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~  214 (1081)
T KOG0309|consen  135 VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY  214 (1081)
T ss_pred             ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh
Confidence            99999999998764 45555555556788999987777777888889999999986 56778888888999999876 33


Q ss_pred             CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC--CCCEEEEEeCCCcEEEEE---------cCC-CcEE
Q 022910          204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA--DSTLALSGSKDGSVHMVN---------ITT-GKVV  271 (290)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd---------~~~-~~~~  271 (290)
                      ..+.+++.||+|++||.............  ...+|..-++.|  +|.++.---.+..+.+++         +.+ .+++
T Consensus       215 s~~~s~~~d~tvkfw~y~kSt~e~~~~vt--t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pV  292 (1081)
T KOG0309|consen  215 SEIMSSSNDGTVKFWDYSKSTTESKRTVT--TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPV  292 (1081)
T ss_pred             hhhcccCCCCceeeecccccccccceecc--ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcce
Confidence            56788999999999998754332211111  345666666666  333333222222444443         332 4689


Q ss_pred             EEEccCCCcEEEEEE
Q 022910          272 SSLVSHTDSIECIGF  286 (290)
Q Consensus       272 ~~~~~~~~~v~~i~~  286 (290)
                      ++|.+|...|..+.|
T Consensus       293 h~F~GH~D~V~eFlW  307 (1081)
T KOG0309|consen  293 HTFVGHDDVVLEFLW  307 (1081)
T ss_pred             eeecCcchHHHHHhh
Confidence            999999877655444

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.26  E-value=4.8e-08  Score=77.55  Aligned_cols=209  Identities=16%  Similarity=0.192  Sum_probs=151.1

Q ss_pred             CEEEEEECCCCCcEEEEecCCCc-EEEEEccCCeeeeeeccccCCEE--EEEECCCCCEEEEEeC-----CCcEEEEcCC
Q 022910           66 EVYSVACSPTDATLVATGGGDDK-GFFWRINQGDWASEIQGHKDSVS--SLAFSMDGQLLASGGL-----DGLVQIWDPS  137 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~-----dg~i~i~d~~  137 (290)
                      ....++.+|..+..++.+..-|+ ..+||..+++....+....+.-.  .-.|+++|++|++.-.     .|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            44578889977788888877765 78899999988877764433321  3679999999998743     5899999998


Q ss_pred             -CCceEEEEecCCCCEEEEEEcCCCCEEEEeeC------------------CCeEEEEECCcccEEEeee----cCCCCe
Q 022910          138 -SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE------------------DSTVWMWNADRAAYLNMFS----GHGSSV  194 (290)
Q Consensus       138 -~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~----~~~~~i  194 (290)
                       +.+.+..+..+.-....+.+.|+++.|+++..                  +..+.+.|..+++.+.+..    .|...|
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence             66778888888777888999999987777632                  2356667778888776633    367789


Q ss_pred             EEEEEcCCCCEEEEEeCCCe-------EEEEcCCCCeeeEEEeCCC----CcccCeEEEEEcCCCCEEEEEe-CCCcEEE
Q 022910          195 TCGDFTPDGKTICTGSDDAT-------LRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLALSGS-KDGSVHM  262 (290)
Q Consensus       195 ~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~  262 (290)
                      +.|++.++|..++..-..|.       |.+++..  ..+..+....    .....+-+|++++++.++++.+ ..+.+.+
T Consensus       166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            99999999877666544432       4444432  3233333211    1346789999999998775554 5679999


Q ss_pred             EEcCCCcEEEEEcc
Q 022910          263 VNITTGKVVSSLVS  276 (290)
Q Consensus       263 wd~~~~~~~~~~~~  276 (290)
                      ||..+++.+....-
T Consensus       244 ~d~~tg~~~~~~~l  257 (305)
T PF07433_consen  244 WDAATGRLLGSVPL  257 (305)
T ss_pred             EECCCCCEeecccc
Confidence            99999998876653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.26  E-value=3.4e-11  Score=111.85  Aligned_cols=165  Identities=16%  Similarity=0.286  Sum_probs=136.8

Q ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec-CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE
Q 022910          106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL  184 (290)
Q Consensus       106 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  184 (290)
                      +-..|.++.-+|...+.++|+.||.+++|....++.+..++. ....++.+.|+.+|+.+.++..||.+.+|.+. .++.
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence            456788888889999999999999999999999988877763 33689999999999999999999999999987 6677


Q ss_pred             EeeecCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910          185 NMFSGHGSSVTCGDFTPDGKTICTGS---DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH  261 (290)
Q Consensus       185 ~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  261 (290)
                      ...+.|......+.|-.  ..+++++   .++.+.+||..-......+.  ..|..+++++++.|..++|++|+.+|.|+
T Consensus      2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred             eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEE
Confidence            77888998888888864  5566543   47889999975433323332  34899999999999999999999999999


Q ss_pred             EEEcCCCcEEEEEc
Q 022910          262 MVNITTGKVVSSLV  275 (290)
Q Consensus       262 ~wd~~~~~~~~~~~  275 (290)
                      +||++..+++++++
T Consensus      2362 l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             EeehHHHHHHHHhh
Confidence            99999887766654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.25  E-value=7.6e-09  Score=79.77  Aligned_cols=196  Identities=17%  Similarity=0.153  Sum_probs=118.7

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc-------ccCCEEEEEECCCC------CEEEEEeCCCcEEE
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-------HKDSVSSLAFSMDG------QLLASGGLDGLVQI  133 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~~~~i~~~~~~~~~------~~l~~~~~dg~i~i  133 (290)
                      =+.++|+| ++.+||.+...|+|++||+.... +..+..       -...|..|.|.+..      ..|++....|.++-
T Consensus        46 WRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   46 WRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             heEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            36789999 88899999999999999997643 223321       23567788885432      14666677888887


Q ss_pred             EcCCC-----CceEEEEec---CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE
Q 022910          134 WDPSS-----GNLKCTLEG---PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       134 ~d~~~-----~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  205 (290)
                      |-+..     .+....+..   ....|.++.|+|..++|++|+....      +.+.    -++....+++-....+..+
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Py  193 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPY  193 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCc
Confidence            76532     222333332   3557999999999998888875432      0000    0011122222222111111


Q ss_pred             -E-EEEeCCCe------EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910          206 -I-CTGSDDAT------LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       206 -l-~~~~~dg~------i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  277 (290)
                       . ++...++.      ..+|.+-+.+.   +.........|..|..||||..||+...+|.|.+|++.+-++.++...+
T Consensus       194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~---fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  194 YKQVTSSEDDITASSKRRGLLRIPSFKF---FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             EEEccccCccccccccccceeeccceee---eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence             1 11111211      12333322221   1111225678999999999999999999999999999998887776544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.23  E-value=7.8e-12  Score=109.01  Aligned_cols=207  Identities=17%  Similarity=0.241  Sum_probs=157.0

Q ss_pred             CCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC-
Q 022910           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-  129 (290)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-  129 (290)
                      ...-.+.+.|+.|...-+|++|+- +.+.|+.|+..|.|++|++.+|........|..+|+-+.=+.+|..+++.+... 
T Consensus      1088 FSRFr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred             HhhcccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC
Confidence            345667888899999999999998 888999999999999999999999999999999999999999998766654432 


Q ss_pred             -cEEEEcCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-c---CCCCeEEEEEcCCC
Q 022910          130 -LVQIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-G---HGSSVTCGDFTPDG  203 (290)
Q Consensus       130 -~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~---~~~~i~~~~~~~~~  203 (290)
                       ...+|++.+ +...++|..    -.++.|+.....-+.|+......+||++++.++.++- +   ....-.+..|+|..
T Consensus      1167 PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred             chHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence             467999854 445555543    3568888765566667777789999999987766532 1   22223677899988


Q ss_pred             CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      .+++   .||  .+||++..+.++.+......    ..-.|+|.|.-++.-+     -|||+++.+++++.+.
T Consensus      1243 ~LIl---ndG--vLWDvR~~~aIh~FD~ft~~----~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRFDQFTDY----GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS 1301 (1516)
T ss_pred             ceEe---eCc--eeeeeccHHHHhhhhhheec----ccccccCCCceEEeec-----hhhhhHHHHHHhcCcc
Confidence            7765   456  47999988877777653211    1235999998888765     4899999888776654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.23  E-value=5.9e-11  Score=89.70  Aligned_cols=197  Identities=16%  Similarity=0.168  Sum_probs=121.7

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee------------eeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS------------EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (290)
                      |+.+.+.  ....|+++..++.+..+...++.+..            .+..|+.+-.+-+.+-.++.++++..||.+.++
T Consensus        39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~  116 (319)
T KOG4714|consen   39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF  116 (319)
T ss_pred             EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence            5666665  34567777777766666544333222            222233332222333345679999999999999


Q ss_pred             cCCCCceE-EEEecCCCCEEEEEEcCCCCEEEEeeC-----CCeEEEEECCcccEEEeeecCCCCeEEEEEcCC-CCEEE
Q 022910          135 DPSSGNLK-CTLEGPGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTIC  207 (290)
Q Consensus       135 d~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~  207 (290)
                      +.+.-..+ ..+........+.++...++.+.++.-     -+..+.|+++..+.+..-......|.+++-+|. ...++
T Consensus       117 s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~  196 (319)
T KOG4714|consen  117 STDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC  196 (319)
T ss_pred             echHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence            87652111 111111111222333334555555432     245666776655433322223344999999994 56677


Q ss_pred             EEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 022910          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      +|+.||.+.+||.++...+.  .....|+.+++.+-|+| ++..|++++.||.+..||..+
T Consensus       197 cgt~dg~~~l~d~rn~~~p~--S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  197 CGTDDGIVGLWDARNVAMPV--SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCeEEEEEcccccchH--HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            89999999999999874332  22334899999999999 788999999999999999763

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=3.6e-11  Score=100.06  Aligned_cols=174  Identities=13%  Similarity=0.237  Sum_probs=129.9

Q ss_pred             eeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC-------CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCe
Q 022910          100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST  172 (290)
Q Consensus       100 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~  172 (290)
                      +..+.+|+..|+.++--.+.+.+++++.|.+|++|.++.       ..+..+++.|+.+|..+.|-.+.++++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            344668999998888777788899999999999999863       23566778899999999998887777765  688


Q ss_pred             EEEEECCcccEEEeeec--CCCCeEEEEEcC--CCCEEEEE-eCCCeEEEEcCCCCeeeEEEeCC--CCcccCeEEEEEc
Q 022910          173 VWMWNADRAAYLNMFSG--HGSSVTCGDFTP--DGKTICTG-SDDATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTIS  245 (290)
Q Consensus       173 i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~  245 (290)
                      |.+||.--++++..+..  ..+.+..+..-|  +...+++| +...+|+++|.+.+.-...++..  +.....+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            99999776665553321  122233333333  33444444 67889999999987655444432  3355678999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          246 ADSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       246 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      +.|+.++++-..|.|.+.|.++|+.+.+..
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence            999999999999999999999999887543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=5.8e-11  Score=93.18  Aligned_cols=161  Identities=12%  Similarity=0.191  Sum_probs=121.0

Q ss_pred             EEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-----cEEEeeecCCCCeEEE
Q 022910          123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-----AYLNMFSGHGSSVTCG  197 (290)
Q Consensus       123 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~  197 (290)
                      ++.+.+-.+-+-++.++-. +.|. ..+.|.++.|+..+++++.|+.+|.|..+|++.+     .+...+ -|.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence            4445566788888887753 2333 4556888999988999999999999999999875     233444 388899998


Q ss_pred             EEcC-CCCEEEEEeCCCeEEEEcCCCCee---eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 022910          198 DFTP-DGKTICTGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS  273 (290)
Q Consensus       198 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  273 (290)
                      .... ++++|++++.+|.|.+||++..++   +..+.+|... ..-.-+...+....+++++.|...|+|.++.|.++.+
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~-~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL-SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccc-ccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            8776 788999999999999999998777   6666664321 2222234456677888899999999999999999999


Q ss_pred             EccCC----CcEEEEEEe
Q 022910          274 LVSHT----DSIECIGFS  287 (290)
Q Consensus       274 ~~~~~----~~v~~i~~s  287 (290)
                      ++-..    ..+.+++|.
T Consensus       384 ipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  384 IPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             cCCCCccccccccceehh
Confidence            87533    245666664

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=2.6e-09  Score=92.39  Aligned_cols=212  Identities=13%  Similarity=0.102  Sum_probs=159.3

Q ss_pred             CCCceeeeccCCcCEEEEEECCC-----------CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC---C
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPT-----------DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM---D  118 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~---~  118 (290)
                      ..+.++.+.-|+..|+.+.|.|-           ...+||++...|.|.+||...+..+..+..|..++..++|-+   +
T Consensus        44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~  123 (1062)
T KOG1912|consen   44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD  123 (1062)
T ss_pred             hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence            46678888899999999999872           234788888999999999999999999999999999999976   3


Q ss_pred             C-CEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCc-------ccEEEeeec
Q 022910          119 G-QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADR-------AAYLNMFSG  189 (290)
Q Consensus       119 ~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~  189 (290)
                      . ..|++.....+|.+|+..+|+....+........|+.+.| +.+++..-+..|.+.+.+.-.       ++..+.-..
T Consensus       124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd  203 (1062)
T KOG1912|consen  124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD  203 (1062)
T ss_pred             chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC
Confidence            3 3666777788999999999999888877777788899998 566777777778888776532       122222222


Q ss_pred             CCC-------------------------CeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEE
Q 022910          190 HGS-------------------------SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI  244 (290)
Q Consensus       190 ~~~-------------------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  244 (290)
                      |..                         ....++|+|.-+-++-......+.++|++-..++..+..   ..+.+..+.|
T Consensus       204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi---er~~akfv~v  280 (1062)
T KOG1912|consen  204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI---ERGGAKFVDV  280 (1062)
T ss_pred             ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe---ccCCcceeEe
Confidence            211                         012356788555444445567799999998888877775   4556677788


Q ss_pred             cCCC--CEEEEEeCCCcEEEEEcCC
Q 022910          245 SADS--TLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       245 ~~~~--~~l~~~~~dg~i~~wd~~~  267 (290)
                      -|++  ..|++.-.+|.+.+|-.+.
T Consensus       281 lP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  281 LPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ccCCCcceEEEEecCCeEEEEEeec
Confidence            7755  5799999999999997654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.20  E-value=2.2e-09  Score=81.72  Aligned_cols=200  Identities=12%  Similarity=0.032  Sum_probs=128.4

Q ss_pred             cCCCcEEEEEccCCe-eeeeeccccCCEEEEEECC-----CCCEEEEEeCCCcEEEEcCCCCceEEE-EecCCCCEEEEE
Q 022910           84 GGDDKGFFWRINQGD-WASEIQGHKDSVSSLAFSM-----DGQLLASGGLDGLVQIWDPSSGNLKCT-LEGPGGGVEWVS  156 (290)
Q Consensus        84 ~~dg~i~iw~~~~~~-~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~i~  156 (290)
                      +....+-+|++-+.. .+..+.      ..+.|-|     .-.+||.|+..|.+.+|...+.+.... ...+...|+-+.
T Consensus        49 ~~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~  122 (344)
T KOG4532|consen   49 SKTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK  122 (344)
T ss_pred             cceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence            344557777765543 111111      3345544     345899999999999999987654332 223332222111


Q ss_pred             Ec-CCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe-eeEEEeCCCC
Q 022910          157 WH-PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPY  234 (290)
Q Consensus       157 ~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~  234 (290)
                      =. -..--+..++.|.++++.++..+..........-.+.++.++++++++++.+....|..|.+.... .+..+.... 
T Consensus       123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~-  201 (344)
T KOG4532|consen  123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP-  201 (344)
T ss_pred             hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc-
Confidence            11 112356677888888888876554333332222347899999999999999999999999876432 222211111 


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE-----EEEccCCCcEEEEEEecCC
Q 022910          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV-----SSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-----~~~~~~~~~v~~i~~s~d~  290 (290)
                      ....--+..|+.....+|++..||++.|||++.....     .+-..|++.|+.+.|+|-|
T Consensus       202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence            3344567789998899999999999999999875432     2233588999999999754

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=5e-10  Score=86.97  Aligned_cols=211  Identities=13%  Similarity=0.256  Sum_probs=142.7

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-----eeeeecccc------------CCEEEEEECCCCC--EEEE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGHK------------DSVSSLAFSMDGQ--LLAS  124 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~------------~~i~~~~~~~~~~--~l~~  124 (290)
                      ...|+++.|.. .+.++++|...|.|.+|.-....     ....+++|.            ..|..+.|..++.  .++.
T Consensus        26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            45789999998 77899999999999999866532     222344442            3578888875443  6777


Q ss_pred             EeCCCcEEEEcCCCCc-------------------e------------------E-----EEE-ecCCCCEEEEEEcCCC
Q 022910          125 GGLDGLVQIWDPSSGN-------------------L------------------K-----CTL-EGPGGGVEWVSWHPRG  161 (290)
Q Consensus       125 ~~~dg~i~i~d~~~~~-------------------~------------------~-----~~~-~~~~~~i~~i~~~~~~  161 (290)
                      .+.|.+|++|.+....                   +                  +     +.+ ..|...|.++.|..+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            7889999999764220                   0                  0     011 3455668888898887


Q ss_pred             CEEEEeeCCCeEEEEECCccc---EEEeeecCC-----CCeEEEEEcCC-CCEEEEEeCCCeEEEEcCCCCee------e
Q 022910          162 HIVLAGSEDSTVWMWNADRAA---YLNMFSGHG-----SSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGEN------I  226 (290)
Q Consensus       162 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~------~  226 (290)
                      ..++++. +-.|.+|++....   .+.-+++|.     ..|++..|+|. .+.+.-++..|.|++-|++....      +
T Consensus       185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            7777664 5789999986532   222333333     35788899994 45666777899999999984321      1


Q ss_pred             EEE--eC-----CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEEccC
Q 022910          227 HVI--RG-----HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSH  277 (290)
Q Consensus       227 ~~~--~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~  277 (290)
                      ...  .+     .....+.|..+.|+++|+++++-.. -+|++||++.. .++.++.-|
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence            111  10     0112356888999999999987654 48999999864 467777554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.19  E-value=1.8e-08  Score=83.21  Aligned_cols=196  Identities=13%  Similarity=0.098  Sum_probs=136.5

Q ss_pred             cCEEEEEECCC-CCcEEEE-----ecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe-----------C
Q 022910           65 DEVYSVACSPT-DATLVAT-----GGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-----------L  127 (290)
Q Consensus        65 ~~v~~~~~~~~-~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------~  127 (290)
                      ..|...+|+|. +...||.     .+..+.+++|.+..+..+....-....-..+.|.+.|++|++--           .
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            56788889984 2233443     46678999999987766655443333445688999998766531           1


Q ss_pred             CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee--CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE
Q 022910          128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  205 (290)
                      ...++|+++....+. ......++|...+|.|.++.+++.+  ....+.++|++.. ....+  ....=..+.|+|.+++
T Consensus       254 esnLyl~~~~e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~  329 (561)
T COG5354         254 ESNLYLLRITERSIP-VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERY  329 (561)
T ss_pred             cceEEEEeecccccc-eeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccE
Confidence            256888888744433 3335678999999999988766654  6788999999877 22222  3344466789999999


Q ss_pred             EEEEeC---CCeEEEEcCCCCeeeE-EEeCCCCcccCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCc
Q 022910          206 ICTGSD---DATLRVWNPKSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSK------DGSVHMVNITTGK  269 (290)
Q Consensus       206 l~~~~~---dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~  269 (290)
                      ++.++-   .|.|-+||........ .+.+     ...+-+.|+|+++++.+...      |..|.+||+...+
T Consensus       330 il~agF~nl~gni~i~~~~~rf~~~~~~~~-----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             EEEecCCccccceEEeccCCceEEEEEeec-----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            988664   4789999987655433 4433     34455689999999988754      7789999986543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.18  E-value=1.9e-08  Score=79.36  Aligned_cols=187  Identities=18%  Similarity=0.214  Sum_probs=123.4

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE-ecCC---CCEE
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL-EGPG---GGVE  153 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~i~  153 (290)
                      ..+++++.++.|..||..+++.+..+.. ...+.... ...+..+++++.++.|+.+|..+++.+... ....   ....
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~  114 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS  114 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence            3455667899999999999998877764 22211111 224556777778889999999999998874 3221   1122


Q ss_pred             EEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCC----------eEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910          154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS----------VTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (290)
Q Consensus       154 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  223 (290)
                      .......+..++++..++.|..+|+++++.+.........          +..-....++ .+++++.++.+..+|+.++
T Consensus       115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg  193 (238)
T PF13360_consen  115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG  193 (238)
T ss_dssp             -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT
T ss_pred             ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC
Confidence            2233334788899988999999999999988777653322          1122222344 7777777885444499999


Q ss_pred             eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 022910          224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS  273 (290)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  273 (290)
                      +.+.... .    ..+.. .....+..|++++.++.|.+||+++|+.+.+
T Consensus       194 ~~~w~~~-~----~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  194 EKLWSKP-I----SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EEEEEEC-S----S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CEEEEec-C----CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            8664222 1    11222 1345677888888999999999999998754

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=1.2e-08  Score=87.83  Aligned_cols=210  Identities=15%  Similarity=0.264  Sum_probs=139.5

Q ss_pred             CCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--cccCCEEEEEECCCCCEEEEEeCC
Q 022910           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLD  128 (290)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d  128 (290)
                      ......-+++.||++.|.-+.|+. ..+.|-|+..+|.|.+|-+-++.....+.  ...+.|.+++|+.+|..|+....|
T Consensus        58 ~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD  136 (1189)
T KOG2041|consen   58 ASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYED  136 (1189)
T ss_pred             ccccchhhhhccCcceEEEEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEcc
Confidence            344556688999999999999998 55677788999999999998887655443  355679999999999999998888


Q ss_pred             CcEEEEcCCCCceE-EEEec---------------------------------------------------CCCCEEEEE
Q 022910          129 GLVQIWDPSSGNLK-CTLEG---------------------------------------------------PGGGVEWVS  156 (290)
Q Consensus       129 g~i~i~d~~~~~~~-~~~~~---------------------------------------------------~~~~i~~i~  156 (290)
                      |.|.+=.+..++.- ..+++                                                   ....|..+.
T Consensus       137 GavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~  216 (1189)
T KOG2041|consen  137 GAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE  216 (1189)
T ss_pred             CCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence            88876554432211 00110                                                   111233334


Q ss_pred             Ec--------CCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC---------eEEEEc
Q 022910          157 WH--------PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA---------TLRVWN  219 (290)
Q Consensus       157 ~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d  219 (290)
                      |.        |+...|+++..+|.+.+..-.+......+. .+..+..+.|+++|..|++++.+.         .|.+|.
T Consensus       217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys  295 (1189)
T KOG2041|consen  217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS  295 (1189)
T ss_pred             eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence            32        244566666666666554433222111222 236688899999999999987643         466665


Q ss_pred             CCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      . -|..+.+++.   ....|++++|-..|-.++.+ -|+.|++=+++.
T Consensus       296 p-~G~i~gtlkv---pg~~It~lsWEg~gLriA~A-vdsfiyfanIRP  338 (1189)
T KOG2041|consen  296 P-YGHIVGTLKV---PGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP  338 (1189)
T ss_pred             c-chhheEEEec---CCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence            4 3566667765   67789999998766666554 466777666653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.14  E-value=1.3e-08  Score=84.09  Aligned_cols=219  Identities=14%  Similarity=0.101  Sum_probs=151.6

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC-------------
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-------------  129 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------------  129 (290)
                      -.-++..++|+| .+.+|++... ..|.+|.......+..+. | ..|..+.|+|.++||.+-+..+             
T Consensus        31 ~~~p~~~~~~SP-~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~  106 (561)
T COG5354          31 ENWPVAYVSESP-LGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS  106 (561)
T ss_pred             cCcchhheeecC-cchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence            456888999999 7777776654 458899988877666665 4 3589999999999999976543             


Q ss_pred             --cEEEEcCCCCceEEEEecCCCC--EE-EEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-CCCCeEEEEEcCCC
Q 022910          130 --LVQIWDPSSGNLKCTLEGPGGG--VE-WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTPDG  203 (290)
Q Consensus       130 --~i~i~d~~~~~~~~~~~~~~~~--i~-~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~  203 (290)
                        .+.+||+.++.++..+.....+  .+ -+.|+.+.+++|-. -...++|+++...-....+.. ....|....|+|.+
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~  185 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG  185 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence              4999999999999988876655  44 67888888776655 335799999722211111111 13568888899953


Q ss_pred             --CEEEE-----EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe-----------CCCcEEEEEc
Q 022910          204 --KTICT-----GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-----------KDGSVHMVNI  265 (290)
Q Consensus       204 --~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~dg~i~~wd~  265 (290)
                        ..|+.     ....+.+++|.+..+..+.+..-   ....-..+.|.+.|.+|++--           ....++++++
T Consensus       186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l---fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~  262 (561)
T COG5354         186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL---FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI  262 (561)
T ss_pred             CCceEEEEccccCCCCcEEEEEEccCCCeeeeeee---EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence              34443     45788999999986665544332   333445788999888776421           1356888888


Q ss_pred             CCCcEEEEEccCCCcEEEEEEecCC
Q 022910          266 TTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       266 ~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +.. -+.....-.++|..++|.|.+
T Consensus       263 ~e~-~i~V~~~~~~pVhdf~W~p~S  286 (561)
T COG5354         263 TER-SIPVEKDLKDPVHDFTWEPLS  286 (561)
T ss_pred             ccc-ccceeccccccceeeeecccC
Confidence            733 333333557899999998863

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.14  E-value=2e-08  Score=92.93  Aligned_cols=198  Identities=16%  Similarity=0.306  Sum_probs=129.3

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc---------------C--------Ceeeeeecc--------------
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRIN---------------Q--------GDWASEIQG--------------  105 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~---------------~--------~~~~~~~~~--------------  105 (290)
                      -...|.|++|+| ++.+|+..+.++++.+....               .        |+....+.|              
T Consensus       119 vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  119 VDSGILAASWSP-DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EcCcEEEEEECC-CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            356899999999 77888888888888776431               0        000000100              


Q ss_pred             ----------ccCCEEEEEECCCCCEEEEEeC---C---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC
Q 022910          106 ----------HKDSVSSLAFSMDGQLLASGGL---D---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE  169 (290)
Q Consensus       106 ----------~~~~i~~~~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  169 (290)
                                +...-..++|..||.++|+.+.   .   ..|+||+-+ |.+..+...-.+--.+++|.|.|++||+.-.
T Consensus       198 ~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~  276 (928)
T PF04762_consen  198 VPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR  276 (928)
T ss_pred             CCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence                      2224467899999999999875   2   579999965 6655555444444567999999999998765


Q ss_pred             ---CCeEEEEECC---cccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe--eeEEEeCCCCcccCeEE
Q 022910          170 ---DSTVWMWNAD---RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE--NIHVIRGHPYHTEGLTC  241 (290)
Q Consensus       170 ---dg~i~i~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~  241 (290)
                         ...|.+|.-.   .++....+......|..|.|++++..|++...+. |.+|-..+..  ..+.+.-.  ....+..
T Consensus       277 ~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~--~~~~~~~  353 (928)
T PF04762_consen  277 LPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS--SSESVNF  353 (928)
T ss_pred             cCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc--CCCCCCc
Confidence               3346666522   2222222233466899999999999999987665 9999887653  12222211  2334555


Q ss_pred             EEEcC-CCCEEEEEeCCCcEEEEEc
Q 022910          242 LTISA-DSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       242 ~~~~~-~~~~l~~~~~dg~i~~wd~  265 (290)
                      +.|+| +...|...+.+|.+..++.
T Consensus       354 ~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  354 VKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             eEECCCCCCEEEEEecCCcEEEEEE
Confidence            99999 4556777776676655543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.13  E-value=4.4e-08  Score=82.88  Aligned_cols=191  Identities=16%  Similarity=0.113  Sum_probs=124.7

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccccCCEE-----EEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCC--C-
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVS-----SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG--G-  150 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~-  150 (290)
                      .++.++.+|.+..||..+++.+..+......+.     +...  .+..++.+..+|.+..+|+.+++.+.......  + 
T Consensus       147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~  224 (377)
T TIGR03300       147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR  224 (377)
T ss_pred             EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence            455566788899999888887766653222111     1111  13467788888999999999998765443110  0 


Q ss_pred             -C---EEEEEEcC--CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe
Q 022910          151 -G---VEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE  224 (290)
Q Consensus       151 -~---i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  224 (290)
                       .   ...+.-+|  .+..+++++.+|.++.||..+++.+..... .. ......  .+..+++++.+|.|+.+|..+++
T Consensus       225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPAV--DDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCceE--eCCEEEEECCCCeEEEEECCCCc
Confidence             0   00111111  355788888899999999999987765542 11 122222  46678888899999999999998


Q ss_pred             eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCC
Q 022910          225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD  279 (290)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  279 (290)
                      .+......  ......+...  .+..|++++.+|.|+++|..+++.+.+++.+..
T Consensus       301 ~~W~~~~~--~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~  351 (377)
T TIGR03300       301 ELWKNDEL--KYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS  351 (377)
T ss_pred             EEEccccc--cCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence            76554321  1111222222  366888999999999999999999998886554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=1.3e-08  Score=84.92  Aligned_cols=215  Identities=14%  Similarity=0.123  Sum_probs=147.0

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC-----------CCcEEEEc
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-----------DGLVQIWD  135 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d  135 (290)
                      =+-+.||| .|.+|+|--..| |.+|--.+-..+.++. |.+ |.-+.|||+.+||++-+.           ...++|||
T Consensus       213 etyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  213 ETYVRWSP-KGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeeEEecC-CceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            35688999 778888876544 7799766666666665 654 788999999999999653           25799999


Q ss_pred             CCCCceEEEEecCCC---CEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-
Q 022910          136 PSSGNLKCTLEGPGG---GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-  211 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~---~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  211 (290)
                      +.+|.....+....+   .-.-+.||.+++++|.-.. ..|.||+..+..++-.-...-..|....|+|.+++||--.. 
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe  367 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE  367 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence            999998888775322   2234689999999998777 56999998776555444444567889999999888875432 


Q ss_pred             ----CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcE-EEEEcc
Q 022910          212 ----DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS----------KDGSVHMVNITTGKV-VSSLVS  276 (290)
Q Consensus       212 ----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~wd~~~~~~-~~~~~~  276 (290)
                          -..+.+..+.+.+.+++...   +.-.=..+.|-.+|.+|+.--          .-..+-|+.++.... +..+ .
T Consensus       368 ~~~~parvtL~evPs~~~iRt~nl---fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-e  443 (698)
T KOG2314|consen  368 TNNIPARVTLMEVPSKREIRTKNL---FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-E  443 (698)
T ss_pred             ccCCcceEEEEecCccceeeeccc---eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-e
Confidence                23566677766666555443   333445677777888887532          112345555554332 2222 2


Q ss_pred             CCCcEEEEEEecCC
Q 022910          277 HTDSIECIGFSRSE  290 (290)
Q Consensus       277 ~~~~v~~i~~s~d~  290 (290)
                      -...|...+|-|.|
T Consensus       444 lke~vi~FaWEP~g  457 (698)
T KOG2314|consen  444 LKESVIAFAWEPHG  457 (698)
T ss_pred             cchheeeeeeccCC
Confidence            35677888887765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.13  E-value=3.4e-08  Score=83.59  Aligned_cols=191  Identities=15%  Similarity=0.106  Sum_probs=121.0

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEE-EE
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW-VS  156 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~-i~  156 (290)
                      ..+++++.+|.|..+|..+++.+............+..  ++..+++++.+|.|+.+|..+|+.+........ +.+ ..
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p~  142 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPPL  142 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCCE
Confidence            35667778899999999999988766533322222222  567788888999999999999998776654332 221 11


Q ss_pred             EcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeE-----EEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeC
Q 022910          157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT-----CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG  231 (290)
Q Consensus       157 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  231 (290)
                      .  .+..++.++.+|.|+.||.++++.+..+......+.     +...  .+..++++..+|.+..+|+++++.+.....
T Consensus       143 v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~  218 (377)
T TIGR03300       143 V--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRV  218 (377)
T ss_pred             E--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence            1  345777788899999999999987766653322111     1111  234678888899999999999987654332


Q ss_pred             CCCcc-cC---eEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          232 HPYHT-EG---LTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       232 ~~~~~-~~---v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      ..... ..   ...+.-+|  .+..+++++.+|.++.||..+|+.+....
T Consensus       219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~  268 (377)
T TIGR03300       219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD  268 (377)
T ss_pred             ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence            10000 00   00011111  24466666777778888877777665543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.13  E-value=3.1e-07  Score=72.92  Aligned_cols=181  Identities=17%  Similarity=0.190  Sum_probs=120.5

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc-----ccCCEEEEEECCCCCEEEEEeCC--------CcEEE
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-----HKDSVSSLAFSMDGQLLASGGLD--------GLVQI  133 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i  133 (290)
                      ...+++...++.++++. . +.+.++|..+++.......     .....+.+++.|+|++.++....        |.|..
T Consensus        42 ~~G~~~~~~~g~l~v~~-~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVAD-S-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEEEEE-T-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEEEEE-c-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            56677773266666554 3 4556669888765443332     34567899999999977776543        55777


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEE-EeeCCCeEEEEECCccc-------EEEeeecCCCCeEEEEEcCCCCE
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAA-------YLNMFSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~  205 (290)
                      ++.. ++...... .-...+.|+|+|+++.|+ +-+..+.|..|++....       ....+....+..-.+++..+|++
T Consensus       120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l  197 (246)
T PF08450_consen  120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL  197 (246)
T ss_dssp             EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred             ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence            7776 55443333 344578999999998766 55667889999986322       11222222234789999999998


Q ss_pred             EEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEc-CCCCEEEEEe
Q 022910          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGS  255 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  255 (290)
                      .++....+.|.+++.. ++.+..+..   ....+++++|. ++.+.|+..+
T Consensus       198 ~va~~~~~~I~~~~p~-G~~~~~i~~---p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  198 WVADWGGGRIVVFDPD-GKLLREIEL---PVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEETTTEEEEEETT-SCEEEEEE----SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEEcCCCEEEEECCC-ccEEEEEcC---CCCCEEEEEEECCCCCEEEEEe
Confidence            8888889999999987 888887775   23479999994 6666555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=1.3e-08  Score=88.18  Aligned_cols=221  Identities=15%  Similarity=0.200  Sum_probs=160.3

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCC------------CEEEEEeCCCcEEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG------------QLLASGGLDGLVQI  133 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~l~~~~~dg~i~i  133 (290)
                      .-.++.|+| +| +||-|+. ..|.+-|..+.+.+..+.-|...|+.+.|.|-.            -.||++...|.|.+
T Consensus        17 N~~A~Dw~~-~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   17 NRNAADWSP-SG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             cccccccCc-cc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            356788998 54 6666663 578899999999999999999999999998721            15777788899999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcC---CC-CEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC-CCCEEEE
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHP---RG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICT  208 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  208 (290)
                      ||...+..+..+..+..++..++|-+   +. ..|++-.....|.+|+..+|+.+.++........|+.+.| +.+.+..
T Consensus        94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~  173 (1062)
T KOG1912|consen   94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV  173 (1062)
T ss_pred             EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence            99999998888998999999999976   33 4666666678999999999999988887778888999999 6677777


Q ss_pred             EeCCCeEEEEcCCC-------CeeeEEEeCCCC-------------cccC---------eEEEEEcCCCCEEEEEeCCCc
Q 022910          209 GSDDATLRVWNPKS-------GENIHVIRGHPY-------------HTEG---------LTCLTISADSTLALSGSKDGS  259 (290)
Q Consensus       209 ~~~dg~i~i~d~~~-------~~~~~~~~~~~~-------------~~~~---------v~~~~~~~~~~~l~~~~~dg~  259 (290)
                      -+..|.|.+-+.-.       ++..+.-..+..             +...         .-.++|+|.-+.++-......
T Consensus       174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre  253 (1062)
T KOG1912|consen  174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE  253 (1062)
T ss_pred             EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence            77777777765431       222222111100             0000         123567885544444556778


Q ss_pred             EEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          260 VHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       260 i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      +.++|++-..++.......+.+.-+.|-|+
T Consensus       254 llv~dle~~~~l~vvpier~~akfv~vlP~  283 (1062)
T KOG1912|consen  254 LLVFDLEYECCLAVVPIERGGAKFVDVLPD  283 (1062)
T ss_pred             eEEEcchhhceeEEEEeccCCcceeEeccC
Confidence            999999888887777665665555555554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=6e-10  Score=90.47  Aligned_cols=211  Identities=18%  Similarity=0.169  Sum_probs=153.3

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC---CeeeeeeccccCCEEEEEECCCCCEEEEEeC-CCcEEEEcCC
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQIWDPS  137 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~  137 (290)
                      -|.+.|+.+...  -..++.+++.||.++.|.-..   -+.+..+..|-..|.+++.+-++.++.+.+. |..++++|+.
T Consensus         7 mhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    7 MHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             cccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            478888887655  457888999999999997554   2344456678889999999999999999777 9999999998


Q ss_pred             CCceEEEEecCC--CCEEEEEEcCCC--CEEEE-eeCCCeEEEEECCccc--EEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910          138 SGNLKCTLEGPG--GGVEWVSWHPRG--HIVLA-GSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       138 ~~~~~~~~~~~~--~~i~~i~~~~~~--~~l~~-~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      +...+..++...  +.+. ...++..  ..+++ .-.+|.+.++|-....  ....-.-|..+|.++.+.|.+..+++..
T Consensus        85 n~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             ccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence            776554443222  2122 2222211  13333 3457889999976543  3334445899999999999999999999


Q ss_pred             CCCeEEEEcCCC-Ceee-----EE------EeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          211 DDATLRVWNPKS-GENI-----HV------IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       211 ~dg~i~i~d~~~-~~~~-----~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      ..|.|.-|.... .+..     ..      +.+........+++.|+|++..+.+-+.|..|+++.+++|++++.+.
T Consensus       164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence            999999998762 1111     11      11122245678899999999999999999999999999999887664

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=1.3e-08  Score=84.91  Aligned_cols=182  Identities=13%  Similarity=0.189  Sum_probs=128.0

Q ss_pred             EEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee
Q 022910           89 GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS  168 (290)
Q Consensus        89 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  168 (290)
                      ...|+.........-....-.-+-+.|||.|.||++--.-| |.+|--.+...++.+. |.+ +.-+.|||..+||++=+
T Consensus       192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s  268 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYS  268 (698)
T ss_pred             EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEec
Confidence            44555443322222222223446789999999999988766 8999877777777775 554 99999999999999854


Q ss_pred             C-----------CCeEEEEECCcccEEEeeecCCC--C-eEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC
Q 022910          169 E-----------DSTVWMWNADRAAYLNMFSGHGS--S-VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY  234 (290)
Q Consensus       169 ~-----------dg~i~i~d~~~~~~~~~~~~~~~--~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  234 (290)
                      .           ...++|||+++|...+.+.....  . -.-+.||.+++++|.-.. ..|.||+..+..+   +.....
T Consensus       269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l---ld~Ksl  344 (698)
T KOG2314|consen  269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML---LDKKSL  344 (698)
T ss_pred             CCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee---eccccc
Confidence            2           25799999999998887765222  2 234689999999987666 4689999876433   333333


Q ss_pred             cccCeEEEEEcCCCCEEEEEeC-----CCcEEEEEcCCCcEEEEEccC
Q 022910          235 HTEGLTCLTISADSTLALSGSK-----DGSVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~  277 (290)
                      ...+|....|+|.+++||--+-     -.++.+..+.+++.+++-..|
T Consensus       345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf  392 (698)
T KOG2314|consen  345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF  392 (698)
T ss_pred             CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccce
Confidence            5678999999999888876433     235777777777777665443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=4e-09  Score=85.80  Aligned_cols=220  Identities=20%  Similarity=0.176  Sum_probs=156.4

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecC-CCcEEEEEccCCeeeeeeccccCCEEEEEEC-CCCC---EEEEE-eC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGG-DDKGFFWRINQGDWASEIQGHKDSVSSLAFS-MDGQ---LLASG-GL  127 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-~~~~---~l~~~-~~  127 (290)
                      .+.+..++.|-+.|.+++.+- ++.+++|.+. |..++++|+.+-..+..++-..-+ ..+.|. ..|.   .|+++ -.
T Consensus        43 vEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~  120 (558)
T KOG0882|consen   43 VEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFK  120 (558)
T ss_pred             eeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeeccc
Confidence            345677788999999999887 8889989777 999999999876554333311111 112222 2221   34433 34


Q ss_pred             CCcEEEEcCCCCc--eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc-cc-----E---------EEeeecC
Q 022910          128 DGLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AA-----Y---------LNMFSGH  190 (290)
Q Consensus       128 dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~-----~---------~~~~~~~  190 (290)
                      +|.+.|+|-....  ....-.-|..+|.++.+.+-+..+++....|.|..|.... .+     .         +..+...
T Consensus       121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~  200 (558)
T KOG0882|consen  121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA  200 (558)
T ss_pred             CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccc
Confidence            7899999976543  2333345889999999999999999999999999999873 11     1         1112224


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC-----------------------------Cc-ccCeE
Q 022910          191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP-----------------------------YH-TEGLT  240 (290)
Q Consensus       191 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------------------~~-~~~v~  240 (290)
                      .....++.|+|++..+.+-+.|..|++++.++++.++.+....                             .+ ...-+
T Consensus       201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~  280 (558)
T KOG0882|consen  201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGT  280 (558)
T ss_pred             ccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccc
Confidence            5667899999999999999999999999999987665442110                             01 12345


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       241 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      .+.|...+++|+-|+-=| |++.++.++.+++.+-.
T Consensus       281 ~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk  315 (558)
T KOG0882|consen  281 NAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK  315 (558)
T ss_pred             eeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence            678888999999998765 89999999988877643

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=8.5e-10  Score=86.78  Aligned_cols=162  Identities=15%  Similarity=0.187  Sum_probs=119.7

Q ss_pred             EEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC-----ceEEEEecCCCCEEEE
Q 022910           81 ATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-----NLKCTLEGPGGGVEWV  155 (290)
Q Consensus        81 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~i  155 (290)
                      ++.+.+-.|-+-++.++-.. .+. ..+.|.++.|...++.+..|+..|.|..+|++..     .+.+.+ .|.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence            34445667778888776422 233 5667889999988999999999999999999865     333444 378889998


Q ss_pred             EEcC-CCCEEEEeeCCCeEEEEECCcccE---EEeeecCCCCeEE--EEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEE
Q 022910          156 SWHP-RGHIVLAGSEDSTVWMWNADRAAY---LNMFSGHGSSVTC--GDFTPDGKTICTGSDDATLRVWNPKSGENIHVI  229 (290)
Q Consensus       156 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  229 (290)
                      ..-. ++.+|++.+.+|.|++||++.-++   +.++.+|...-.-  +-+.+....+++++.|...|||.++.+..+.++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            8766 678999999999999999998777   7888887553332  234556678889999999999999999988777


Q ss_pred             eCCCC-cccCeEEEEEc
Q 022910          230 RGHPY-HTEGLTCLTIS  245 (290)
Q Consensus       230 ~~~~~-~~~~v~~~~~~  245 (290)
                      +.... ....+.+++|.
T Consensus       385 pf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  385 PFPYSASEVDIPSVAFD  401 (425)
T ss_pred             CCCCccccccccceehh
Confidence            64321 12234555554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=99.05  E-value=8.3e-08  Score=87.10  Aligned_cols=201  Identities=12%  Similarity=0.145  Sum_probs=134.1

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC----C--
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS----S--  138 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~----~--  138 (290)
                      +.|.++.|.. ++..++.+...|.|.+-|..+..... ...-...|.+++|+|+.+.++..+..++|.+..-.    .  
T Consensus        69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   69 DEIVSVQFLA-DTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             cceEEEEEec-ccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            6899999998 66777778888999999887754332 33356789999999999999999888888775421    0  


Q ss_pred             -----------------CceEEEEecCC---------------------CCEEEEEEcCCCCEEEEe-----eCCCeEEE
Q 022910          139 -----------------GNLKCTLEGPG---------------------GGVEWVSWHPRGHIVLAG-----SEDSTVWM  175 (290)
Q Consensus       139 -----------------~~~~~~~~~~~---------------------~~i~~i~~~~~~~~l~~~-----~~dg~i~i  175 (290)
                                       |+....|.+..                     ..=+.|.|--+|.++|+.     .....|++
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence                             11111222111                     112358899999999983     23378999


Q ss_pred             EECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE---eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEE
Q 022910          176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG---SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL  252 (290)
Q Consensus       176 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (290)
                      ||-+ +..-..-....+.-.+++|-|.|..+++-   ..++.|.+|..+....-......+.....+..++|+.++..|+
T Consensus       227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA  305 (1265)
T KOG1920|consen  227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA  305 (1265)
T ss_pred             eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence            9977 43322222233344688999999988874   3466799998653332111111222334499999999999998


Q ss_pred             E---EeCCCcEEEEEcCCC
Q 022910          253 S---GSKDGSVHMVNITTG  268 (290)
Q Consensus       253 ~---~~~dg~i~~wd~~~~  268 (290)
                      +   ......|++|-+.+.
T Consensus       306 v~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  306 VVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeecccccceEEEEEecCe
Confidence            8   444455999988764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=6.9e-08  Score=84.67  Aligned_cols=206  Identities=14%  Similarity=0.152  Sum_probs=135.5

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCC-EEEEEECCCCCEEEEEeCCC-----cEEEEcCCCC
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS-VSSLAFSMDGQLLASGGLDG-----LVQIWDPSSG  139 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~  139 (290)
                      .|.|  |++ ++..++.|+.+|.|.+++- ..+.+..++.+... |..+....+..+|++.+.|+     .|+||+++.-
T Consensus        27 ~isc--~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   27 AISC--CSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             ceeE--EcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence            4544  455 6678899999999877763 23444677777776 44444444446788777654     4899998643


Q ss_pred             ------ceE---EEEe--c--CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC---c-ccEEEeeecCCCCeEEEEEcCC
Q 022910          140 ------NLK---CTLE--G--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD---R-AAYLNMFSGHGSSVTCGDFTPD  202 (290)
Q Consensus       140 ------~~~---~~~~--~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~---~-~~~~~~~~~~~~~i~~~~~~~~  202 (290)
                            .++   ..+.  .  ...++.+++.+.+-+.+|+|-.+|.|..+.-.   . +....-......+|+.+++..+
T Consensus       103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence                  222   1111  1  24678999999999999999999999998532   1 1222222335679999999888


Q ss_pred             CCEEEEEeCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cCCC
Q 022910          203 GKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTD  279 (290)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~  279 (290)
                      +..++-......|.+|.+....+ ...+.   .+...++|..+++....+++++ ...+.+|+....++-..+. +|..
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld---~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRTPSLKVLD---NNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK  257 (933)
T ss_pred             CceeEEEEecceeEEEEecCCCcceeeec---cCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence            87633333345799999874332 22233   3778899999987555455554 3479999987766666666 5544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.01  E-value=2.3e-10  Score=100.12  Aligned_cols=181  Identities=18%  Similarity=0.219  Sum_probs=132.9

Q ss_pred             eeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCC--eEEEEE
Q 022910          100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS--TVWMWN  177 (290)
Q Consensus       100 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--~i~i~d  177 (290)
                      ...+..|....+|++|+-..++|++|+..|.|++|++.+|.......+|.++|+.+.-+.+|..+++.+...  -..+|+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            445667888999999999999999999999999999999999999999999999999999999877766544  477898


Q ss_pred             CCc-ccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEe-CCCCcccCeEEEEEcCCCCEEEEEe
Q 022910          178 ADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR-GHPYHTEGLTCLTISADSTLALSGS  255 (290)
Q Consensus       178 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~  255 (290)
                      +.. +.....+.    .-.++.|+.....-+.|+......+||+.++.++.++. ......-.-++..|+|+..+++   
T Consensus      1174 ~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred             cccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---
Confidence            764 33344443    23567787755445566666678999999998876632 2221222346788999888776   


Q ss_pred             CCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          256 KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       256 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .||  .+||++..+.++.|...+..+.+ .|+|+|
T Consensus      1247 ndG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~g 1278 (1516)
T KOG1832|consen 1247 NDG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPSG 1278 (1516)
T ss_pred             eCc--eeeeeccHHHHhhhhhheecccc-cccCCC
Confidence            466  47999988888777654422222 355554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=99.00  E-value=1.3e-07  Score=84.60  Aligned_cols=134  Identities=14%  Similarity=0.215  Sum_probs=94.9

Q ss_pred             eCCCcEEEEcCCCCceEEEEecCCCC-EEEEEEcC-----CCCEEEEeeCCCeEEEEECCccc--EEEe-e--ecCCCCe
Q 022910          126 GLDGLVQIWDPSSGNLKCTLEGPGGG-VEWVSWHP-----RGHIVLAGSEDSTVWMWNADRAA--YLNM-F--SGHGSSV  194 (290)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~-----~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~--~~~~~~i  194 (290)
                      .....|+-.|++.|+.+..+..+... |..++-..     ....-++|-.+..+..||.|-..  ++.. .  -......
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            34678999999999999999987653 44443221     13456778888899999998642  2211 1  1234567


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEcCCCCeee-EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       195 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      +|++-+.+| +||+|+.+|.||+||. .+... ..+.+   ...+|.+|..+.||++|++.+. ..|.++++
T Consensus       581 s~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~---lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  581 SCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPG---LGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             eEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCC---CCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            788777665 7999999999999995 33332 22333   6789999999999999987764 57777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.00  E-value=1.9e-07  Score=73.71  Aligned_cols=185  Identities=17%  Similarity=0.173  Sum_probs=120.8

Q ss_pred             CCcEEEEEccCCeeeeeeccc--cCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 022910           86 DDKGFFWRINQGDWASEIQGH--KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI  163 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~  163 (290)
                      +|+|..||..+++.+......  .....+. ..+.+.++++++.++.|+.||..+|+.+..+..... +.... ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecccc
Confidence            688999999999988877531  1222211 233567788888999999999999998877775322 11111 224556


Q ss_pred             EEEeeCCCeEEEEECCcccEEEee-ecCC---CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcc-c-
Q 022910          164 VLAGSEDSTVWMWNADRAAYLNMF-SGHG---SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-E-  237 (290)
Q Consensus       164 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~-  237 (290)
                      +++++.++.|+.+|..+++.+... ....   .....+.....+..++++..++.|..+|+++|+.+.......... . 
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            777778889999999999988774 3221   111222222247888999889999999999999988876532111 1 


Q ss_pred             -----CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910          238 -----GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       238 -----~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  274 (290)
                           .+..-....++ .++.++.++.+..+|+.+++.+...
T Consensus       159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~  199 (238)
T PF13360_consen  159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSK  199 (238)
T ss_dssp             EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEE
T ss_pred             eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEe
Confidence                 11222222344 7777777886444499999866533

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.95  E-value=1e-06  Score=70.08  Aligned_cols=194  Identities=17%  Similarity=0.195  Sum_probs=132.0

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEe-----cCCCcEEEEEcc-CCeeeeeeccccCCEEEEEECCCCCEEEEEe--
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATG-----GGDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSMDGQLLASGG--  126 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~-----~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--  126 (290)
                      .+-+.|.||      -.|++ ++.+|++.     ...|.|-|||.. +.+.+..+..|.-.-..+.+.|+++.|+++-  
T Consensus        47 ~~gRHFyGH------g~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG  119 (305)
T PF07433_consen   47 PPGRHFYGH------GVFSP-DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG  119 (305)
T ss_pred             CCCCEEecC------EEEcC-CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence            444555555      36888 56666654     446899999999 6677778887777778899999998777763  


Q ss_pred             ----------------CCCcEEEEcCCCCceEEEEec----CCCCEEEEEEcCCCCEEEEeeCCC-------eEEEEECC
Q 022910          127 ----------------LDGLVQIWDPSSGNLKCTLEG----PGGGVEWVSWHPRGHIVLAGSEDS-------TVWMWNAD  179 (290)
Q Consensus       127 ----------------~dg~i~i~d~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~dg-------~i~i~d~~  179 (290)
                                      .+.+|.+.|..+|+++.....    |...|+.+++.++|..++..-..|       -|.++.-.
T Consensus       120 I~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g  199 (305)
T PF07433_consen  120 IETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG  199 (305)
T ss_pred             CccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC
Confidence                            235577777888888766433    666899999999987666654433       24444332


Q ss_pred             cccEEEee-------ecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEE
Q 022910          180 RAAYLNMF-------SGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA  251 (290)
Q Consensus       180 ~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  251 (290)
                        ..+..+       ......+-+|++++++.+++++ -..+.+.+||..++..+.....     ..+..++..+++ ++
T Consensus       200 --~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-----~D~cGva~~~~~-f~  271 (305)
T PF07433_consen  200 --GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-----PDACGVAPTDDG-FL  271 (305)
T ss_pred             --CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-----CceeeeeecCCc-eE
Confidence              222222       2345789999999999887654 4577899999999987766543     346677777666 55


Q ss_pred             EEEeCCCcEEEEE
Q 022910          252 LSGSKDGSVHMVN  264 (290)
Q Consensus       252 ~~~~~dg~i~~wd  264 (290)
                      ++.+ .|.+....
T Consensus       272 ~ssG-~G~~~~~~  283 (305)
T PF07433_consen  272 VSSG-QGQLIRLS  283 (305)
T ss_pred             EeCC-CccEEEcc
Confidence            5544 45544433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.95  E-value=1.4e-07  Score=82.81  Aligned_cols=108  Identities=15%  Similarity=0.286  Sum_probs=85.2

Q ss_pred             EEEECCCCCcEEEEec----CCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE
Q 022910           69 SVACSPTDATLVATGG----GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (290)
Q Consensus        69 ~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (290)
                      -.+|+| ...+||+++    ..|.|.||- .+|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+....
T Consensus        20 i~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   20 ISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             ccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            356999 666777764    357788874 4455433322 122356799999988899999999999999888877777


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC
Q 022910          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD  179 (290)
Q Consensus       145 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  179 (290)
                      ...|..+|..+.|+++|+.++++..-|.+.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            77899999999999999999999999999999875

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.94  E-value=3.3e-07  Score=77.74  Aligned_cols=228  Identities=19%  Similarity=0.267  Sum_probs=140.6

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEec--CC-CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe-CCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGG--GD-DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDG  129 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~--~d-g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg  129 (290)
                      ..-.+.+..-...+..-+|+|.+..+....-  .. ..+.++++.+++....+. ..+.-...+|+|+|++|+.+. .+|
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg  260 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG  260 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence            4444555555667778889995555443321  12 469999999877655554 334445678999999766654 455


Q ss_pred             --cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-CC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCC
Q 022910          130 --LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       130 --~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  204 (290)
                        .|+++|+..+... .+....+.-..-.|+|+|++++..+. .|  .|.+++...... .++......-..-.|+|+|+
T Consensus       261 ~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~  338 (425)
T COG0823         261 SPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGD  338 (425)
T ss_pred             CccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCC
Confidence              4666777776633 34444444456789999998887664 33  477777776655 33333333333678999999


Q ss_pred             EEEEEeC-CCe--EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCcEEEEEccCCC
Q 022910          205 TICTGSD-DAT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG--SVHMVNITTGKVVSSLVSHTD  279 (290)
Q Consensus       205 ~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~  279 (290)
                      +|+..+. +|.  |.++|+.++...+.+.    .........|.|+++.+...+..+  .+..--..+++....+....+
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt----~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~~~~~  414 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGGKIRILT----STYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLPLADG  414 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCCcEEEcc----ccccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEeccCc
Confidence            9987664 344  7778887766544444    233344557888888766554432  222222234555555655556


Q ss_pred             cEEEEEEec
Q 022910          280 SIECIGFSR  288 (290)
Q Consensus       280 ~v~~i~~s~  288 (290)
                      .+...+|+|
T Consensus       415 ~~~~p~w~~  423 (425)
T COG0823         415 DVRVPAWSP  423 (425)
T ss_pred             ceecccccC
Confidence            777777765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.3e-07  Score=76.13  Aligned_cols=227  Identities=12%  Similarity=0.081  Sum_probs=135.5

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQI  133 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i  133 (290)
                      ++...+.+|...|..++|+|...-++..++.+.+|+|.|+.+...+..+..+ ..+++++|.-+.. +|+.|-..|.|.|
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence            3355777888999999999966668889999999999999999888888877 7899999987654 7888889999999


Q ss_pred             EcCCCCce-EEEEec--CCCCEEEEEEc------CCCCEEEEeeCCCeEEEEECCc--c--cEEEeeecCCCCeEEEEEc
Q 022910          134 WDPSSGNL-KCTLEG--PGGGVEWVSWH------PRGHIVLAGSEDSTVWMWNADR--A--AYLNMFSGHGSSVTCGDFT  200 (290)
Q Consensus       134 ~d~~~~~~-~~~~~~--~~~~i~~i~~~------~~~~~l~~~~~dg~i~i~d~~~--~--~~~~~~~~~~~~i~~~~~~  200 (290)
                      ||++..+- +..+.+  ...+|..++.-      +.+.+|+....+  +..|.+..  .  .++..+ ...+...++.+.
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e~pG~cismqy~  339 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-EPPGICISMQYH  339 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-CCCcceeeeeec
Confidence            99986532 222222  22344444332      234444444432  44454432  1  122222 234555666776


Q ss_pred             CCCCEEEEEeCCC-------eEEE-EcCCCCeeeEEEeC----CCCcccCeEEEEE-cCCCCEEEE-EeCCCcEEEEEcC
Q 022910          201 PDGKTICTGSDDA-------TLRV-WNPKSGENIHVIRG----HPYHTEGLTCLTI-SADSTLALS-GSKDGSVHMVNIT  266 (290)
Q Consensus       201 ~~~~~l~~~~~dg-------~i~i-~d~~~~~~~~~~~~----~~~~~~~v~~~~~-~~~~~~l~~-~~~dg~i~~wd~~  266 (290)
                      +..+.++......       .|.+ -|.+.|.++...+.    .....-.-+...+ .++.++++. |...+.+.+||..
T Consensus       340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~  419 (463)
T KOG1645|consen  340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH  419 (463)
T ss_pred             CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence            6555554443321       1111 12233333222111    1100111111222 234455444 4456789999999


Q ss_pred             CCcEEEEEccCCCcEEEEEE
Q 022910          267 TGKVVSSLVSHTDSIECIGF  286 (290)
Q Consensus       267 ~~~~~~~~~~~~~~v~~i~~  286 (290)
                      ++..++++.. +.+|..|+.
T Consensus       420 s~evvQ~l~~-~epv~Dicp  438 (463)
T KOG1645|consen  420 SFEVVQTLAL-SEPVLDICP  438 (463)
T ss_pred             hhheeeeccc-Ccceeecce
Confidence            9999999876 467776654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.93  E-value=1.9e-06  Score=65.99  Aligned_cols=149  Identities=11%  Similarity=0.074  Sum_probs=106.1

Q ss_pred             CCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCE
Q 022910           73 SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV  152 (290)
Q Consensus        73 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  152 (290)
                      .++...+++.|+..+.+.--|..+++...... -..+|-+-+.- -|++++.|+..|.+++.+.++|.....+.....-=
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk   96 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK   96 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc
Confidence            34456788899999999999999988776543 22333333322 57789999999999999999998877776433211


Q ss_pred             EEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910          153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (290)
Q Consensus       153 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  223 (290)
                      ......+++..+.+|+.|++.+..|.++..++.+.+...+...+-+..|....|+++...|.|.--..+..
T Consensus        97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen   97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            22345678999999999999999999999999887765555555566664444555555666655554443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.93  E-value=2.8e-09  Score=58.43  Aligned_cols=38  Identities=34%  Similarity=0.642  Sum_probs=35.6

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWR   93 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~   93 (290)
                      ++++.+.+|.++|++|+|+| .+.+|++|+.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            46889999999999999999 788999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.92  E-value=3.1e-08  Score=87.31  Aligned_cols=149  Identities=18%  Similarity=0.328  Sum_probs=118.5

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC---------CCcEEEEcC
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---------DGLVQIWDP  136 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~  136 (290)
                      .|+-++.   +++++.+|...|+|.+-|.++.+.++++..|++.|..+..  .|+.|++++.         |..|+|||+
T Consensus       179 ~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL  253 (1118)
T KOG1275|consen  179 GVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL  253 (1118)
T ss_pred             ceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence            3555554   4468889999999999999999999999999999987666  7889999875         567899999


Q ss_pred             CCCceEEEEecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEEC---Ccc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeC
Q 022910          137 SSGNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNA---DRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~---~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  211 (290)
                      +..+.+.-+.-+.++ .-+.|+|. ...+++++..|...+.|.   ... .-+..+...+..+.+++++++++.++.|..
T Consensus       254 Rmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~  332 (1118)
T KOG1275|consen  254 RMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH  332 (1118)
T ss_pred             hhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence            988877666655553 66788885 457888888999999993   333 123334445566999999999999999999


Q ss_pred             CCeEEEEcC
Q 022910          212 DATLRVWNP  220 (290)
Q Consensus       212 dg~i~i~d~  220 (290)
                      +|.|.+|--
T Consensus       333 ~g~v~~wa~  341 (1118)
T KOG1275|consen  333 EGHVNLWAD  341 (1118)
T ss_pred             cCcEeeecC
Confidence            999999973

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.92  E-value=4.7e-07  Score=81.20  Aligned_cols=139  Identities=17%  Similarity=0.204  Sum_probs=96.8

Q ss_pred             cEEEE-ecCCCcEEEEEccCCeeeeeeccccCC-EEEEEECCC-------CCEEEEEeCCCcEEEEcCCCCc--eEEE-E
Q 022910           78 TLVAT-GGGDDKGFFWRINQGDWASEIQGHKDS-VSSLAFSMD-------GQLLASGGLDGLVQIWDPSSGN--LKCT-L  145 (290)
Q Consensus        78 ~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~--~~~~-~  145 (290)
                      .+|+. ......|+-.|++.|+.+.....+... |..+  .|+       ....++|-.+..|..||.+-..  ++.. .
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            34433 344578899999999999998877643 5444  443       2345666678889999987532  2211 1


Q ss_pred             e--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910          146 E--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (290)
Q Consensus       146 ~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  220 (290)
                      +  ......+|++-+.+| +||+|+.+|.||+||--..+....+.+.+.+|..|..+.+|+++++.+.. .|.+++.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence            1  133457788777655 79999999999999954334445566778999999999999999888754 4556654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=2.2e-07  Score=81.00  Aligned_cols=159  Identities=18%  Similarity=0.304  Sum_probs=118.6

Q ss_pred             ceeeeccCCcCEEEEEECCC------------CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC-----
Q 022910           56 STHIFSGHSDEVYSVACSPT------------DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-----  118 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-----  118 (290)
                      ....|..|.+.|.-..+.-.            .|.++++|+.||+|.|-.+-+.+....+. ...++.+++++|+     
T Consensus        50 ~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~  128 (846)
T KOG2066|consen   50 KFFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQ  128 (846)
T ss_pred             ceeeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhh
Confidence            44556678888877776553            47899999999999999999988877776 5678999999997     


Q ss_pred             CCEEEEEeCCCcEEEEcCCCC--ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCC---
Q 022910          119 GQLLASGGLDGLVQIWDPSSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS---  193 (290)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---  193 (290)
                      .+.+++|+..| +.++.-.-.  +....+....++|.++.|.  |+++|-++..| |++||+.+.+.+..+......   
T Consensus       129 sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~  204 (846)
T KOG2066|consen  129 SKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP  204 (846)
T ss_pred             hhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc
Confidence            45899999888 777764321  2222456677899999994  78899888877 999999998887776543332   


Q ss_pred             ---eEEEEEcCCCCEEEEEeCCCeEEEEcCC
Q 022910          194 ---VTCGDFTPDGKTICTGSDDATLRVWNPK  221 (290)
Q Consensus       194 ---i~~~~~~~~~~~l~~~~~dg~i~i~d~~  221 (290)
                         ...+.|.+. ..|+.|-.| +|+|..++
T Consensus       205 e~fpphl~W~~~-~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  205 ELFPPHLHWQDE-DRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             ccCCCceEecCC-CeEEEecCC-eEEEEEEe
Confidence               245677654 456666444 68888776

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.91  E-value=4.6e-06  Score=65.37  Aligned_cols=204  Identities=12%  Similarity=0.155  Sum_probs=120.7

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccc-cCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-KDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      .+.+.+-...+..|+|+|+.+.++++....+.|..++.. ++.+.++.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            345667777899999999778899999999999888864 6777766532 35578889987777777666689999998


Q ss_pred             CCCCc----e--EEEEe-----cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc---ccEEEe--------eecCCCC
Q 022910          136 PSSGN----L--KCTLE-----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---AAYLNM--------FSGHGSS  193 (290)
Q Consensus       136 ~~~~~----~--~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~--------~~~~~~~  193 (290)
                      +....    .  ...+.     .+...+-.++|.|.++.|+++-...-..+|.+..   ...+..        .......
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            84321    1  11221     2334589999999888888877666666666543   111111        1123456


Q ss_pred             eEEEEEcCC-CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC------cccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 022910          194 VTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPY------HTEGLTCLTISADSTLALSGSKDGSVHMV  263 (290)
Q Consensus       194 i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~~w  263 (290)
                      +.+++++|. +.+++.+.....|..+| ..|+.+..+.-...      .-...-.|+|.++|++++++ .-+..+++
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            889999994 56667777888999999 56776665553321      12357889999998666554 55555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.91  E-value=7.9e-09  Score=56.59  Aligned_cols=39  Identities=38%  Similarity=0.819  Sum_probs=36.6

Q ss_pred             ccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910          181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (290)
Q Consensus       181 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  219 (290)
                      ++++..+.+|...|.+|+|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.90  E-value=5.9e-06  Score=69.83  Aligned_cols=218  Identities=16%  Similarity=0.189  Sum_probs=157.9

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC---CCcEEEEcCCCCceEE
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKC  143 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~  143 (290)
                      -..++.++.+.+.+++...+..|.+.|..+.+......... ....++++|+++.++++..   ++++.+.|..+++.+.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            35678888666677777778999999988777766665333 5578999999987777755   6899999999998888


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEee-CCCeEEEEECCcccEEE-e---eecCCCCeEEEEEcCCCCEEEEEeCC---CeE
Q 022910          144 TLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLN-M---FSGHGSSVTCGDFTPDGKTICTGSDD---ATL  215 (290)
Q Consensus       144 ~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i  215 (290)
                      .......+ ..+++.|+++.++.+. .++.|.+.|.......+ .   ..........+.++|++.++++....   +.+
T Consensus       155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence            75544444 8899999999666665 68899999987665553 1   11123345678899999977665544   589


Q ss_pred             EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEEccCCC---cEEEEEEec
Q 022910          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVVSSLVSHTD---SIECIGFSR  288 (290)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~---~v~~i~~s~  288 (290)
                      .+.|..++.......... .. ....+..+|+|.++.+... .+.+.+.|..+.+....+.....   .+..+++.+
T Consensus       234 ~~id~~~~~v~~~~~~~~-~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~  308 (381)
T COG3391         234 LKIDTATGNVTATDLPVG-SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP  308 (381)
T ss_pred             EEEeCCCceEEEeccccc-cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence            999999887665522211 22 4667889999999888844 48999999999888887664332   355555544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.84  E-value=6.5e-07  Score=75.91  Aligned_cols=138  Identities=15%  Similarity=0.188  Sum_probs=92.8

Q ss_pred             CEEEEEECCC-CCEEEEE----eCCCc----EEEEcCCCCceEE--EEe-cCCCCEEEEEEcCCCCEEEEeeCCCeEEEE
Q 022910          109 SVSSLAFSMD-GQLLASG----GLDGL----VQIWDPSSGNLKC--TLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMW  176 (290)
Q Consensus       109 ~i~~~~~~~~-~~~l~~~----~~dg~----i~i~d~~~~~~~~--~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~  176 (290)
                      ...++.|+.. ...+.+.    +.+|.    -.+|++..++...  ... .....+.+++++|+...|+.|+.||.|.+|
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY  286 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence            3466777753 3344443    22343    3466666554321  111 355679999999999999999999999999


Q ss_pred             ECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee-------------eEEEeCCCCcccCeEEEE
Q 022910          177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-------------IHVIRGHPYHTEGLTCLT  243 (290)
Q Consensus       177 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------~~~~~~~~~~~~~v~~~~  243 (290)
                      |...+.....  ...-.++.++|+|+|.++++|+..|.|.+||+.-...             .-.+..+-.+...+..+.
T Consensus       287 D~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iq  364 (545)
T PF11768_consen  287 DTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQ  364 (545)
T ss_pred             EcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeE
Confidence            9877643322  3446678999999999999999999999999864322             122222223455667778


Q ss_pred             EcCCC
Q 022910          244 ISADS  248 (290)
Q Consensus       244 ~~~~~  248 (290)
                      |.+..
T Consensus       365 W~~~~  369 (545)
T PF11768_consen  365 WAPAP  369 (545)
T ss_pred             eccCC
Confidence            87543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.83  E-value=9e-10  Score=93.26  Aligned_cols=201  Identities=22%  Similarity=0.271  Sum_probs=134.6

Q ss_pred             CcCEEEEEECCC-CCcEEEEecCCCcEEEEEccCCee--eeeeccccCCEEEEEECC-CCCEEEEEe----CCCcEEEEc
Q 022910           64 SDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSM-DGQLLASGG----LDGLVQIWD  135 (290)
Q Consensus        64 ~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~dg~i~i~d  135 (290)
                      ...+.|+++.-. +..++++|..+|.|-+-.+....-  .....++....++++|++ |.++||+|-    .+..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            446778886653 346889999999999988876432  234567888999999987 456777763    367899999


Q ss_pred             CCCC--ceE--EEEec-CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC-CCCEEEEE
Q 022910          136 PSSG--NLK--CTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTG  209 (290)
Q Consensus       136 ~~~~--~~~--~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  209 (290)
                      +.++  .+.  ..+.+ ......+++|-.+.+++++|.....+.++|++..... ........+..+.+.| .++++++.
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceecc
Confidence            9876  221  12222 2234568888888889999999999999999854321 1111334677788888 77777776


Q ss_pred             eCCCeEEEEc-CCCCee-eEEEe-CCCCcccCeEEEEEcCCC-CEEEEEe-CCCcEEEEEcC
Q 022910          210 SDDATLRVWN-PKSGEN-IHVIR-GHPYHTEGLTCLTISADS-TLALSGS-KDGSVHMVNIT  266 (290)
Q Consensus       210 ~~dg~i~i~d-~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~-~dg~i~~wd~~  266 (290)
                      . ||.|.+|| .++-+. +..+. ........+..++|+|.. ..|++.. ..++|++|++.
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            5 99999999 443332 22221 111123358999999932 3444444 45789999975

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.82  E-value=3.8e-06  Score=70.63  Aligned_cols=207  Identities=14%  Similarity=0.162  Sum_probs=123.1

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee-------------------------------------------ee
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-------------------------------------------SE  102 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------------------------------------------~~  102 (290)
                      .|+.+.|.+ ...-|++|...|.|.||.+...+..                                           ..
T Consensus         3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            588999999 6667788889999999987532111                                           01


Q ss_pred             eccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec--------CCCCEEEEEEcC-----CC---CEEEE
Q 022910          103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG--------PGGGVEWVSWHP-----RG---HIVLA  166 (290)
Q Consensus       103 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~i~~~~-----~~---~~l~~  166 (290)
                      +....++|++++.+ +=.++|+|..+|.+.|.|++....+..-..        ....++++.|..     ++   -.+++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            12246789999997 555999999999999999988877765321        223678888863     22   48999


Q ss_pred             eeCCCeEEEEECCc---cc----EEEeeecCCCCeEEEE-EcCC--------------------CCEEEEEeCCCeEEEE
Q 022910          167 GSEDSTVWMWNADR---AA----YLNMFSGHGSSVTCGD-FTPD--------------------GKTICTGSDDATLRVW  218 (290)
Q Consensus       167 ~~~dg~i~i~d~~~---~~----~~~~~~~~~~~i~~~~-~~~~--------------------~~~l~~~~~dg~i~i~  218 (290)
                      |+..|.+.+|.+--   +.    .......+.++|..|. ++.+                    -.-+++......++++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            99999999998752   11    1112223455655554 3211                    0124444557789999


Q ss_pred             cCCCCeeeEEEeCCCCcccCeEEEEEc-----CCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910          219 NPKSGENIHVIRGHPYHTEGLTCLTIS-----ADSTLALSGSKDGSVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  277 (290)
                      ...+.+.......   .......+++-     ..+..|++-..+|.|++|.+..-+.+..+..+
T Consensus       241 ~~~~~k~~~K~~~---~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~  301 (395)
T PF08596_consen  241 KPPKSKGAHKSFD---DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP  301 (395)
T ss_dssp             -TT---EEEEE-S---S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred             eCCCCcccceeec---cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence            9988776655542   22223333442     25678888899999999999998888877653

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.76  E-value=1.3e-07  Score=73.93  Aligned_cols=183  Identities=17%  Similarity=0.329  Sum_probs=122.1

Q ss_pred             cCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-----eEEEEecCC------------CCEEEEEEcCCC--CEEEEe
Q 022910          107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----LKCTLEGPG------------GGVEWVSWHPRG--HIVLAG  167 (290)
Q Consensus       107 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~------------~~i~~i~~~~~~--~~l~~~  167 (290)
                      ...|+++.|...|.|+++|...|.|.+|.-....     ....+++|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4578999999999999999999999999765432     122344443            256778886543  378888


Q ss_pred             eCCCeEEEEECCcccE------------------------------------------EEee-ecCCCCeEEEEEcCCCC
Q 022910          168 SEDSTVWMWNADRAAY------------------------------------------LNMF-SGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       168 ~~dg~i~i~d~~~~~~------------------------------------------~~~~-~~~~~~i~~~~~~~~~~  204 (290)
                      +.+.+|++|.+.....                                          .+.+ ..|...|.++.|..+..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            8999999998764310                                          0111 34666788999988877


Q ss_pred             EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCc-----ccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcE------EE
Q 022910          205 TICTGSDDATLRVWNPKSGENIHVIRGHPYH-----TEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKV------VS  272 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~------~~  272 (290)
                      .++++ .|-.|.+|++.-...-..+...+.|     ...|++..|+|. ...+.-.++.|.|++-|++...+      +.
T Consensus       186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            77765 5778999998744322222111112     235888999993 45666677889999999983221      11


Q ss_pred             ----------EEccCCCcEEEEEEecCC
Q 022910          273 ----------SLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       273 ----------~~~~~~~~v~~i~~s~d~  290 (290)
                                -+.+-...|+.+.|+++|
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ng  292 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNG  292 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCC
Confidence                      111223478888999876

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=5.8e-07  Score=79.06  Aligned_cols=173  Identities=19%  Similarity=0.247  Sum_probs=116.8

Q ss_pred             EECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCC-EEEEEEcCCCCEEEEeeCCC-----eEEEEECCcc------
Q 022910          114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-VEWVSWHPRGHIVLAGSEDS-----TVWMWNADRA------  181 (290)
Q Consensus       114 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~------  181 (290)
                      +|++.+..++.|+.+|.|.+++ +..+.++.++.+... ++.+....+.++|++.+.|+     .+++|+++..      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            4678889999999999998887 334555777776666 44444443446777766654     5999998753      


Q ss_pred             cEE---Eeee----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC--CCeeeEEEeCCCCcccCeEEEEEcCCCCEEE
Q 022910          182 AYL---NMFS----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK--SGENIHVIRGHPYHTEGLTCLTISADSTLAL  252 (290)
Q Consensus       182 ~~~---~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (290)
                      +++   +.+.    ....++.+++++.+-+.+|+|-.+|.|..+.-.  ..+-.+....+. ...+|+.+++..++..++
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~-~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHR-GKEPITGLALRSDGKSVL  187 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeecc-CCCCceeeEEecCCceeE
Confidence            233   2121    135678999999999999999999999988421  111111111121 578999999998887733


Q ss_pred             EEeCCCcEEEEEcCCCcE-EEEEccCCCcEEEEEEec
Q 022910          253 SGSKDGSVHMVNITTGKV-VSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       253 ~~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~i~~s~  288 (290)
                      -...-..|.+|.+....+ ...+..|..++.|.+|++
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~  224 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD  224 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccceeeecCC
Confidence            333345799999874442 455777777888888875

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.75  E-value=4.6e-06  Score=71.02  Aligned_cols=191  Identities=16%  Similarity=0.070  Sum_probs=118.9

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccccCCEEE-EEECC--CCCEEEEEeCCCcEEEEcCCCCceEEEEecCC--C---
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS-LAFSM--DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG--G---  150 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~-~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~---  150 (290)
                      .++.+..++.+..+|..+++.+..+......+.. ..-+|  .+..++.++.+|.+..++..+++.+.......  +   
T Consensus       162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~  241 (394)
T PRK11138        162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE  241 (394)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc
Confidence            3445666788888888888877766532111000 00011  13356777788999999999988765543211  0   


Q ss_pred             --CEEEEEEcC--CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeee
Q 022910          151 --GVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI  226 (290)
Q Consensus       151 --~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  226 (290)
                        ....+..+|  .+..+++++.+|.+..+|+.+++.+-+....  ....+..  .+..+++++.+|.|..+|..+++.+
T Consensus       242 ~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        242 IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             hhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence              011111222  3556777788899999999999876554321  1112222  4667888889999999999999875


Q ss_pred             EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910          227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  277 (290)
                      .......  .....+...  .+.+|+.++.+|.|+++|..+|+.+.+....
T Consensus       318 W~~~~~~--~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~  364 (394)
T PRK11138        318 WSQSDLL--HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD  364 (394)
T ss_pred             EcccccC--CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence            5433211  111122222  2557788999999999999999998877643

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.74  E-value=4.1e-06  Score=72.87  Aligned_cols=178  Identities=11%  Similarity=0.043  Sum_probs=113.6

Q ss_pred             EecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC----CcEEEEcCCCCceEEEEecCCCCEEEEEE
Q 022910           82 TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD----GLVQIWDPSSGNLKCTLEGPGGGVEWVSW  157 (290)
Q Consensus        82 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~i~~  157 (290)
                      +.-..+.+.+.|..+.+....+.-. +....+.++|+++++++.+.+    .++...+......+..+....  +  .++
T Consensus       210 ~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~  284 (635)
T PRK02888        210 PKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEA  284 (635)
T ss_pred             ccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHh
Confidence            3334566777788877776666532 244678899999998887632    233333332222222221110  0  133


Q ss_pred             cCCCCEEEEeeCCCeEEEEECCc-----ccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEcCCCCeeeE----
Q 022910          158 HPRGHIVLAGSEDSTVWMWNADR-----AAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIH----  227 (290)
Q Consensus       158 ~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~----  227 (290)
                      .++|++...+  ++.|.+.|.++     .+.+..+. .......+.++|+|+++++++. +.+|.|+|+.+.+...    
T Consensus       285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence            4577766663  57899999998     34444444 5667789999999999876554 8899999998755310    


Q ss_pred             ----EEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          228 ----VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       228 ----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                          .+.............+|.++|..+.+-..|..|..|++.+
T Consensus       362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                1111111233445678999998888888899999999876

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.74  E-value=2.2e-06  Score=72.84  Aligned_cols=114  Identities=18%  Similarity=0.220  Sum_probs=83.6

Q ss_pred             CEEEEEECCCCCcEEEEe----cCCCc----EEEEEccCCeeeee---eccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910           66 EVYSVACSPTDATLVATG----GGDDK----GFFWRINQGDWASE---IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~----~~dg~----i~iw~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (290)
                      ...++.|+...++.+.|-    +.+|.    -.+|++..++....   --.....|.|++++|+...++.|+.||+|.+|
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY  286 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence            345777776556655553    33443    45677665543221   11367789999999999999999999999999


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc
Q 022910          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA  181 (290)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~  181 (290)
                      |...+...  +....-..+.++|||+|..+++|+..|.+.+||+.-.
T Consensus       287 D~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  287 DTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            98776433  2234456789999999999999999999999998644

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.71  E-value=3.8e-06  Score=71.53  Aligned_cols=194  Identities=14%  Similarity=0.093  Sum_probs=118.0

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccccC-CE-E-----EEEECC--CCCEEEEEeCCCcEEEEcCCCCceEEEEecCC
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHKD-SV-S-----SLAFSM--DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG  149 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~i-~-----~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  149 (290)
                      .+++++.+|.+.-+|..+++.+........ .. .     .+.-.|  .+..++.++.+|.++.+|..+|+.+-......
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  150 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG  150 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence            555667789999999999988776542210 00 0     000011  35577788889999999999999887766443


Q ss_pred             CCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeE-EEEEcC--CCCEEEEEeCCCeEEEEcCCCCeee
Q 022910          150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT-CGDFTP--DGKTICTGSDDATLRVWNPKSGENI  226 (290)
Q Consensus       150 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  226 (290)
                      ........  .+..+++++.+|.|+.+|..+++.+-.+......+. ...-+|  .+..++.++.+|.+..+|..+++.+
T Consensus       151 ~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~  228 (394)
T PRK11138        151 EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLI  228 (394)
T ss_pred             ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhh
Confidence            21111122  245677788889999999999998876653211110 000122  2345777888999999999998876


Q ss_pred             EEEeCCCCcc-c---CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910          227 HVIRGHPYHT-E---GLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       227 ~~~~~~~~~~-~---~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~  274 (290)
                      .......... .   ....+..+|  .+..+++++.+|.++.+|+.+|+.+.+.
T Consensus       229 W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~  282 (394)
T PRK11138        229 WQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR  282 (394)
T ss_pred             heeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence            5543211000 0   011111222  2445666677888888888888766554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.68  E-value=6.6e-05  Score=63.50  Aligned_cols=223  Identities=14%  Similarity=0.170  Sum_probs=144.1

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceEEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCT  144 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~  144 (290)
                      ....+.+.|.+..+.++-.....+...+................-..+++++.+..+ ++...++.|.+.|..+.+....
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            445667777444544444333345555544222222122111334567888888744 4444568999999888877766


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEeeC---CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEcC
Q 022910          145 LEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNP  220 (290)
Q Consensus       145 ~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~  220 (290)
                      ..... ....++++|+++.++++..   ++.+.+.|..+.+.+........+ ..+++.|+|..+++.. .++.|.++|.
T Consensus       112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~  189 (381)
T COG3391         112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT  189 (381)
T ss_pred             eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence            65433 5678999999987777766   688999999998888875544344 8899999999766554 7889999997


Q ss_pred             CCCeeeE-EEeCCCCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEE-EccCCCcEEEEEEecCC
Q 022910          221 KSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSS-LVSHTDSIECIGFSRSE  290 (290)
Q Consensus       221 ~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~-~~~~~~~v~~i~~s~d~  290 (290)
                      .+..... ..............+.++|+|.++++....   +.+...|..++..... +.........+..+|+|
T Consensus       190 ~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g  264 (381)
T COG3391         190 SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAG  264 (381)
T ss_pred             CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCC
Confidence            7665542 100001123445678999999977666544   5999999998887776 22211145566666654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.66  E-value=2.9e-05  Score=60.39  Aligned_cols=142  Identities=15%  Similarity=0.172  Sum_probs=93.7

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEcCCCC--ceEEEEe---cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee
Q 022910          113 LAFSMDGQLLASGGLDGLVQIWDPSSG--NLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF  187 (290)
Q Consensus       113 ~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  187 (290)
                      ++.+.+|+.||+.- |..|.|-..+..  ..+....   .....-+.++|+|++..||.+...|+|++||+..... ..+
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVI   80 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEc
Confidence            55677888777654 677777765543  2222222   2333567899999999999999999999999976433 233


Q ss_pred             ec-------CCCCeEEEEEcCC------CCEEEEEeCCCeEEEEcCCC-----CeeeEEEeCCCCcccCeEEEEEcCCCC
Q 022910          188 SG-------HGSSVTCGDFTPD------GKTICTGSDDATLRVWNPKS-----GENIHVIRGHPYHTEGLTCLTISADST  249 (290)
Q Consensus       188 ~~-------~~~~i~~~~~~~~------~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~  249 (290)
                      ..       ....|..|.|.+.      ...|++-...|.++-|-+..     .+....+.....+..+|+++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            22       2346777777652      12456666788888776532     233344444334678999999999988


Q ss_pred             EEEEEeC
Q 022910          250 LALSGSK  256 (290)
Q Consensus       250 ~l~~~~~  256 (290)
                      +|++|+.
T Consensus       161 LLlVgG~  167 (282)
T PF15492_consen  161 LLLVGGC  167 (282)
T ss_pred             EEEEecc
Confidence            8887764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.65  E-value=9.3e-07  Score=76.25  Aligned_cols=144  Identities=13%  Similarity=0.168  Sum_probs=100.6

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      ..|.--++.. ...+++.|+.-|.+++|+-..++....-. +-.+.+..+..+++..++|.|+..|.|.++-+....+..
T Consensus        34 ~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   34 ARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             ceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            3444334444 66789999999999999987766544332 234455667778888899999999999999887643221


Q ss_pred             ---E--E-ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc----cEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910          144 ---T--L-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       144 ---~--~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                         .  . +.|...|++++|++++..+++|...|.|..-.+...    ...+.+....+.|..+.+. ++.+|++..
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl  188 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL  188 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh
Confidence               1  1 236778999999999999999999999999888772    1223333456677777765 333444433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.64  E-value=3.5e-06  Score=71.60  Aligned_cols=171  Identities=16%  Similarity=0.207  Sum_probs=109.2

Q ss_pred             CeeeeeeccccCCEEEEEECCCCCEEEEEe---CC-CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee-CCC
Q 022910           97 GDWASEIQGHKDSVSSLAFSMDGQLLASGG---LD-GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDS  171 (290)
Q Consensus        97 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d-g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg  171 (290)
                      +.....+......+..-+|+|+++.++..+   .. ..+.++++.+++....+. ..+.-...+|+|+|+.|+.+. .+|
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg  260 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG  260 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence            333444444455677788999998655542   22 469999999987665555 333455678999999777654 455


Q ss_pred             --eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe-CCC--eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC
Q 022910          172 --TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (290)
Q Consensus       172 --~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (290)
                        .|+++|+.++...+ +....+.-..-.|+|+|++++-.+ ..|  .|.++++...........    ...-..-.|+|
T Consensus       261 ~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~----~~~~~~p~~Sp  335 (425)
T COG0823         261 SPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS----GGGNSNPVWSP  335 (425)
T ss_pred             CccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc----CCCCcCccCCC
Confidence              48888888777333 443333334667999999987554 344  477778776665333322    22222678999


Q ss_pred             CCCEEEEEeCC-Cc--EEEEEcCCCcEEEE
Q 022910          247 DSTLALSGSKD-GS--VHMVNITTGKVVSS  273 (290)
Q Consensus       247 ~~~~l~~~~~d-g~--i~~wd~~~~~~~~~  273 (290)
                      +|++|+..+.. |.  |.+.++.++..++.
T Consensus       336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~  365 (425)
T COG0823         336 DGDKIVFESSSGGQWDIDKNDLASGGKIRI  365 (425)
T ss_pred             CCCEEEEEeccCCceeeEEeccCCCCcEEE
Confidence            99998877753 44  66777766553333

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=1.6e-06  Score=72.70  Aligned_cols=141  Identities=18%  Similarity=0.278  Sum_probs=97.1

Q ss_pred             CCCE-EEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-------EEEEeeCCCeEEEEECCcccE--EEee
Q 022910          118 DGQL-LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-------IVLAGSEDSTVWMWNADRAAY--LNMF  187 (290)
Q Consensus       118 ~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~--~~~~  187 (290)
                      +.++ |.++.....|+-.|++.|+.+..++.+.. |+-+.+.|+.+       .-+.|-.+..|.-||.|-...  +...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            4444 33445556788899999999999987776 77788888643       234566788899999874321  2111


Q ss_pred             ec----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910          188 SG----HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (290)
Q Consensus       188 ~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  262 (290)
                      ..    ......|.+-..+ .++++|+.+|.||+||. .+.. ...+++   ...+|..+..+.+|++|++.+ +..+.+
T Consensus       423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPg---LG~~I~hVdvtadGKwil~Tc-~tyLlL  496 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPG---LGDAIKHVDVTADGKWILATC-KTYLLL  496 (644)
T ss_pred             eccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccc---cCCceeeEEeeccCcEEEEec-ccEEEE
Confidence            21    2234455555444 48999999999999998 4443 233444   788999999999999988766 456666


Q ss_pred             EEc
Q 022910          263 VNI  265 (290)
Q Consensus       263 wd~  265 (290)
                      .++
T Consensus       497 i~t  499 (644)
T KOG2395|consen  497 IDT  499 (644)
T ss_pred             EEE
Confidence            665

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.63  E-value=2.2e-08  Score=85.12  Aligned_cols=162  Identities=17%  Similarity=0.223  Sum_probs=108.4

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEec----CCCcEEEEEccCC--eeee--eecc-ccCCEEEEEECCCCCEEEEEeC
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGG----GDDKGFFWRINQG--DWAS--EIQG-HKDSVSSLAFSMDGQLLASGGL  127 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~--~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~  127 (290)
                      .....+|..+.++++|++-+.+.||+|-    .+..+.|||+.++  .+..  .+.. -.....+++|..+.+.+.+|..
T Consensus        95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~  174 (783)
T KOG1008|consen   95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT  174 (783)
T ss_pred             ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence            4455678889999999998888888773    3567999999875  2221  1222 2234558889888889999999


Q ss_pred             CCcEEEEcCCCCc-eEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEE-CCccc-EEEeeec----CCCCeEEEEE
Q 022910          128 DGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWN-ADRAA-YLNMFSG----HGSSVTCGDF  199 (290)
Q Consensus       128 dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d-~~~~~-~~~~~~~----~~~~i~~~~~  199 (290)
                      ...+.++|++... ....+  .+..+..+...| .++++++-. +|.|.+|| .++-+ ++..+..    ....+..++|
T Consensus       175 sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay  251 (783)
T KOG1008|consen  175 SRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY  251 (783)
T ss_pred             cchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe
Confidence            9999999987432 12222  233466677888 566666655 89999999 43322 2222221    2235899999


Q ss_pred             cCCC-CEEEE-EeCCCeEEEEcCC
Q 022910          200 TPDG-KTICT-GSDDATLRVWNPK  221 (290)
Q Consensus       200 ~~~~-~~l~~-~~~dg~i~i~d~~  221 (290)
                      .|.. ..+++ .-..++|+.||+.
T Consensus       252 cPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  252 CPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ccCCcchhhhhccCcceEEEeccc
Confidence            9933 23444 4456789999986

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.62  E-value=1.4e-06  Score=76.79  Aligned_cols=189  Identities=15%  Similarity=0.229  Sum_probs=129.7

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE---
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC---  143 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---  143 (290)
                      +++++|+| ...+|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..++++..-|.|.+|....-..++   
T Consensus        62 atSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~  140 (1416)
T KOG3617|consen   62 ATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN  140 (1416)
T ss_pred             hhhhccCh-HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence            45699999 88899999999999999998877766677899999999999999999999999999999875211110   


Q ss_pred             ---------------EEec---------------CCCCEE------------EE--EEcCCCCEEEEeeCCCeEEEEECC
Q 022910          144 ---------------TLEG---------------PGGGVE------------WV--SWHPRGHIVLAGSEDSTVWMWNAD  179 (290)
Q Consensus       144 ---------------~~~~---------------~~~~i~------------~i--~~~~~~~~l~~~~~dg~i~i~d~~  179 (290)
                                     .+..               ....+-            ++  .-.|+|..|+.++.+|+|+..|-.
T Consensus       141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~  220 (1416)
T KOG3617|consen  141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN  220 (1416)
T ss_pred             hhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC
Confidence                           0000               000000            00  012467788888899998888733


Q ss_pred             cccE-------------------EEe-------------------------ee---------------------------
Q 022910          180 RAAY-------------------LNM-------------------------FS---------------------------  188 (290)
Q Consensus       180 ~~~~-------------------~~~-------------------------~~---------------------------  188 (290)
                      ..+.                   +..                         +.                           
T Consensus       221 g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~  300 (1416)
T KOG3617|consen  221 GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL  300 (1416)
T ss_pred             CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh
Confidence            2110                   000                         00                           


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC-------eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC
Q 022910          189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG-------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       189 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  256 (290)
                      .....+.|++++..+..|..|...|.+.+|--...       .....+.+.....+.|+.+.|.|-.+.+++-+.
T Consensus       301 e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~  375 (1416)
T KOG3617|consen  301 ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTE  375 (1416)
T ss_pred             hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhh
Confidence            01345789999998889999999999999953321       234555555556678999999986555554443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.61  E-value=6.2e-05  Score=61.18  Aligned_cols=212  Identities=16%  Similarity=0.152  Sum_probs=134.0

Q ss_pred             EEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec-
Q 022910           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-  147 (290)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  147 (290)
                      +-.|.+..+.++.+--..+.|.-|+..+++... +. +.+.+.++.....+..|+++..  -+.+++..++..+..+.. 
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence            345777566677787788899999987654322 22 2233344444444445555542  366777766655333321 


Q ss_pred             ----CCCCEEEEEEcCCCCEEEEeeC-----------CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-
Q 022910          148 ----PGGGVEWVSWHPRGHIVLAGSE-----------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-  211 (290)
Q Consensus       148 ----~~~~i~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  211 (290)
                          .....+.....|+|.+.++...           -|.|+.++. .+..++.+..+-.....|+|||+++.|+.+.. 
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~  183 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP  183 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence                1235667888999887766544           133444443 45556666555566688999999988877655 


Q ss_pred             CCeEEEEcCCC--Ce---eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910          212 DATLRVWNPKS--GE---NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVVSSLVSHTDSIECIG  285 (290)
Q Consensus       212 dg~i~i~d~~~--~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~v~~i~  285 (290)
                      .+.|..|++..  +.   ....+. .....+..-.++...+|.+.+++...| .|.+|+.. |+++..+..+...+++++
T Consensus       184 ~~~i~r~~~d~~~g~~~~~~~~~~-~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~  261 (307)
T COG3386         184 ANRIHRYDLDPATGPIGGRRGFVD-FDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA  261 (307)
T ss_pred             CCeEEEEecCcccCccCCcceEEE-ccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence            47888887652  11   111111 111445667788888898886665554 99999987 999999887767777777


Q ss_pred             Ee
Q 022910          286 FS  287 (290)
Q Consensus       286 ~s  287 (290)
                      |-
T Consensus       262 Fg  263 (307)
T COG3386         262 FG  263 (307)
T ss_pred             Ee
Confidence            74

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.61  E-value=3.9e-05  Score=60.24  Aligned_cols=187  Identities=18%  Similarity=0.281  Sum_probs=111.9

Q ss_pred             eeccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceEEEEecCC-CCEEEEEEcCCCCEEEEeeCCCeEEEEECC
Q 022910          102 EIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDSTVWMWNAD  179 (290)
Q Consensus       102 ~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  179 (290)
                      .+.+-...++.++|+|+.+ ++++....+.|..++. +|+.+..+.... +-.-.|++..++.++++.-.++.+.++.+.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4455556799999999765 6666677888888886 478887776433 458889998777777766668999999884


Q ss_pred             ccc------EEEeee-----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC---CeeeEEEeC-----CCCcccCeE
Q 022910          180 RAA------YLNMFS-----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---GENIHVIRG-----HPYHTEGLT  240 (290)
Q Consensus       180 ~~~------~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~-----~~~~~~~v~  240 (290)
                      ...      ....+.     .++..+-.++|.|.++.|+++-......+|.++.   ...+.....     .......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321      112221     2455689999999888888887776667776653   222111110     111344578


Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC---------CcEEEEEEecCC
Q 022910          241 CLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHT---------DSIECIGFSRSE  290 (290)
Q Consensus       241 ~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~i~~s~d~  290 (290)
                      +++++| .+++++.......|..+| .+|+++..+.-..         ..--+|+|.++|
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG  233 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence            899999 567777788888999999 6788877665332         256789998876

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.59  E-value=3.4e-05  Score=67.30  Aligned_cols=187  Identities=13%  Similarity=0.029  Sum_probs=112.3

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeecccc-------------CCEE-------EEEE--------C-----CCCCEEEE
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQGHK-------------DSVS-------SLAF--------S-----MDGQLLAS  124 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~i~-------~~~~--------~-----~~~~~l~~  124 (290)
                      +.|.+|+..|.++|+-+.+++.+..+....             ..|.       .+.|        |     -+|+||+.
T Consensus        67 y~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fi  146 (635)
T PRK02888         67 YGFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFI  146 (635)
T ss_pred             EEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEE
Confidence            467789999999999999988776652110             0111       0111        1     15667766


Q ss_pred             EeC-CCcEEEEcCCCCceEEEEecC-CCCEEEEE-------------------EcCCCCEEEEe-eCCCeEEEEECCccc
Q 022910          125 GGL-DGLVQIWDPSSGNLKCTLEGP-GGGVEWVS-------------------WHPRGHIVLAG-SEDSTVWMWNADRAA  182 (290)
Q Consensus       125 ~~~-dg~i~i~d~~~~~~~~~~~~~-~~~i~~i~-------------------~~~~~~~l~~~-~~dg~i~i~d~~~~~  182 (290)
                      -.. ...|-..++...++-+.+..+ ...+..+.                   +.|+|+.+... -..+.+.+.|..+.+
T Consensus       147 ndk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme  226 (635)
T PRK02888        147 NDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME  226 (635)
T ss_pred             ecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce
Confidence            543 445555555544433322211 11222222                   23455444322 224567788888777


Q ss_pred             EEEeeecCCCCeEEEEEcCCCCEEEEEe----------------------------------------CCCeEEEEcCCC
Q 022910          183 YLNMFSGHGSSVTCGDFTPDGKTICTGS----------------------------------------DDATLRVWNPKS  222 (290)
Q Consensus       183 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------------------------------------~dg~i~i~d~~~  222 (290)
                      ...++... .....++++|+|+++++.+                                        .++.|.++|.++
T Consensus       227 V~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t  305 (635)
T PRK02888        227 VAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRK  305 (635)
T ss_pred             EEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCc
Confidence            66665533 3456678888888887765                                        124577777776


Q ss_pred             -----CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCc
Q 022910          223 -----GENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGK  269 (290)
Q Consensus       223 -----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~  269 (290)
                           ...+..+.    -......+.++|||+++++++. +.+|.|+|+.+.+
T Consensus       306 ~~~~~~~v~~yIP----VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        306 AANAGSALTRYVP----VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             cccCCcceEEEEE----CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence                 33444444    3456778999999998887766 8899999998855

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.58  E-value=8.5e-05  Score=63.35  Aligned_cols=191  Identities=12%  Similarity=0.085  Sum_probs=105.7

Q ss_pred             cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc------eEEEEecCCCCEEEEEEcCCC
Q 022910           88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN------LKCTLEGPGGGVEWVSWHPRG  161 (290)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~i~~i~~~~~~  161 (290)
                      .|+||+.. |+.+.++.-..+.|.++.|+.+. .|++...+|.+++||+....      .+.........+....+..+|
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            48889865 45566555444899999998754 55566789999999986333      011111111222333333345


Q ss_pred             CEEEEeeCCCeEEEEECCccc-EEEeeecCCCCeE----------EEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEe
Q 022910          162 HIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVT----------CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR  230 (290)
Q Consensus       162 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~----------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  230 (290)
                      -.+++  .++.+++..--... ..+.+........          ...++.+....+....++.+.+.+....+.   +.
T Consensus       140 ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~  214 (410)
T PF04841_consen  140 IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID  214 (410)
T ss_pred             EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence            33333  34445444322211 1111111001000          012333334444444445555443322111   11


Q ss_pred             CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC-CCcEEEEEEecC
Q 022910          231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH-TDSIECIGFSRS  289 (290)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~s~d  289 (290)
                          ..+++..|++||++++||.-..+|.+.+....-.+.+..+... ......|.|.-+
T Consensus       215 ----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  215 ----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             ----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence                2467999999999999999999999999987766677666654 356778888654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.56  E-value=2.9e-05  Score=71.30  Aligned_cols=178  Identities=16%  Similarity=0.214  Sum_probs=119.4

Q ss_pred             cCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC----cc-
Q 022910          107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD----RA-  181 (290)
Q Consensus       107 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~----~~-  181 (290)
                      ...|.++.|..+...++.+...|.|.+-|..+......-. -...|.+++|+|+...++..+..+++.+-.-.    .. 
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~-vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN-VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeee-ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            3589999999999999999999999999888765443322 34569999999999999999988887765320    00 


Q ss_pred             ------------------cEEEeeecC---------------------CCCeEEEEEcCCCCEEEEE-----eCCCeEEE
Q 022910          182 ------------------AYLNMFSGH---------------------GSSVTCGDFTPDGKTICTG-----SDDATLRV  217 (290)
Q Consensus       182 ------------------~~~~~~~~~---------------------~~~i~~~~~~~~~~~l~~~-----~~dg~i~i  217 (290)
                                        +....+.+.                     ...=+.|.|--+|.++++.     .....|+|
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence                              101112210                     1122458899999999883     22378999


Q ss_pred             EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCcE----EEEEccCCCcEEEEEEecCC
Q 022910          218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS---KDGSVHMVNITTGKV----VSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~----~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ||.. +..- .....  ....-.+++|-|.|..+++-.   .++.|.+|.- +|-.    ...++.....|..++|+.++
T Consensus       227 ~drE-g~Ln-s~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~s  301 (1265)
T KOG1920|consen  227 YDRE-GALN-STSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNS  301 (1265)
T ss_pred             eccc-chhh-cccCc--ccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCC
Confidence            9987 4332 22211  334456799999999998863   4667999984 3433    22333334458999998763

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.55  E-value=6.6e-05  Score=65.70  Aligned_cols=195  Identities=15%  Similarity=0.219  Sum_probs=122.9

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccccC------CEE--EEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCC
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHKD------SVS--SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG  150 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~i~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  150 (290)
                      .++.++.++.|.-.|..+++.+..+.....      .+.  .+... ++..++.++.++.|+-+|..+++.+-.+.....
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~  141 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ  141 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence            455667789999999999988776653221      010  11111 226788888899999999999998877664322


Q ss_pred             C--EEEEEEcC--CCCEEEEee---------CCCeEEEEECCcccEEEeeecCCC--------------------Ce-EE
Q 022910          151 G--VEWVSWHP--RGHIVLAGS---------EDSTVWMWNADRAAYLNMFSGHGS--------------------SV-TC  196 (290)
Q Consensus       151 ~--i~~i~~~~--~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~--------------------~i-~~  196 (290)
                      .  -..+.-+|  .+.+++.++         .+|.++.+|..+++.+-++.....                    .+ ..
T Consensus       142 ~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~  221 (488)
T cd00216         142 VPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWAS  221 (488)
T ss_pred             cCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCC
Confidence            1  00111111  124455554         368899999999987766543211                    01 12


Q ss_pred             EEEcCCCCEEEEEeCCC------------------eEEEEcCCCCeeeEEEeCCCCcc----cCeEEEEEc----CCCC-
Q 022910          197 GDFTPDGKTICTGSDDA------------------TLRVWNPKSGENIHVIRGHPYHT----EGLTCLTIS----ADST-  249 (290)
Q Consensus       197 ~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~----~~v~~~~~~----~~~~-  249 (290)
                      .++.+.+..+++++.++                  .|.-+|+.+++....++... +.    .......+.    -++. 
T Consensus       222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~-~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP-HDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC-CCCcccccCCCCeEEeccccCCCe
Confidence            34455567788887665                  79999999999988775321 11    000111111    1333 


Q ss_pred             --EEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          250 --LALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       250 --~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                        ++++++.+|.++.+|..+|+.+....
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeE
Confidence              68888899999999999999887654

The alignment model contains an 8-bladed beta-propeller.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.1e-06  Score=71.07  Aligned_cols=94  Identities=13%  Similarity=0.185  Sum_probs=79.9

Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCC-CCEEEE
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICT  208 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~  208 (290)
                      +++.+..+.+....+..+...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-+ ..+|++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            66666666666666777888999999999877 7888999999999999999999998877 78999999875 467889


Q ss_pred             EeCCCeEEEEcCCCCee
Q 022910          209 GSDDATLRVWNPKSGEN  225 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~  225 (290)
                      |-..|.|.|||++..+.
T Consensus       254 Gl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             eccCceEEEEEccCCCc
Confidence            99999999999997654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.49  E-value=3.1e-05  Score=66.18  Aligned_cols=165  Identities=16%  Similarity=0.135  Sum_probs=91.2

Q ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE
Q 022910          106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN  185 (290)
Q Consensus       106 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  185 (290)
                      .......+.++|+++++++++ +|...|+.....+...  .   +.-...+|.+ .+.+|+-...+.|.++.--+.....
T Consensus        31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~--~---G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA--F---GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE--E---EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred             CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc--c---CceeEEEEec-CccEEEEECCCeEEEEEcCccccce
Confidence            444578899999999988855 7888888743333222  1   2244578888 4557777778889997432333223


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       186 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      .+.. ...+..|-.   |.+|+..+.+ .|.+||..+++.+..+..     .+|..+.|++++.+++..+.+ .+++++.
T Consensus       104 ~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  104 SIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             EEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            3332 223444432   7777777654 899999999999888873     238999999999999988765 6777775


Q ss_pred             CCC-----------cEEEEEccCCCcEEEEEEec
Q 022910          266 TTG-----------KVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       266 ~~~-----------~~~~~~~~~~~~v~~i~~s~  288 (290)
                      ...           ..+..+..-...|.+.+|..
T Consensus       173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~  206 (443)
T PF04053_consen  173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE  206 (443)
T ss_dssp             -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET
T ss_pred             cchhcccccccCchhceEEEEEecceeEEEEEEc
Confidence            433           02222222245677777754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.48  E-value=4.8e-05  Score=63.79  Aligned_cols=201  Identities=15%  Similarity=0.203  Sum_probs=113.3

Q ss_pred             CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecC-----------------
Q 022910           86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP-----------------  148 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------  148 (290)
                      .+.+.|||+.+++...... ....+....|+|+|++++... ++.|.++++.++...+.....                 
T Consensus        22 ~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            4679999999976555444 367788999999999999887 578999998877544322211                 


Q ss_pred             CCCEEEEEEcCCCCEEEEeeCCC------------------------------------eEEEEECCcccEEE--ee---
Q 022910          149 GGGVEWVSWHPRGHIVLAGSEDS------------------------------------TVWMWNADRAAYLN--MF---  187 (290)
Q Consensus       149 ~~~i~~i~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~~~~~~--~~---  187 (290)
                      -+.-..+.|+|++++|+....|-                                    .+.++++.+++...  ..   
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~  179 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL  179 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred             cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence            12235688999999888754321                                    23344444443211  11   


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEE--eCC---CeEEEEcCCCCeeeEEEeCC-CCcccCeEEEEEc-CC-CCEEEEEeCCC-
Q 022910          188 SGHGSSVTCGDFTPDGKTICTG--SDD---ATLRVWNPKSGENIHVIRGH-PYHTEGLTCLTIS-AD-STLALSGSKDG-  258 (290)
Q Consensus       188 ~~~~~~i~~~~~~~~~~~l~~~--~~d---g~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~-~~-~~~l~~~~~dg-  258 (290)
                      ......+..+.|.+++..|+..  ..+   ..+.++|..++.....+... ...-..-....|. ++ ..+|.....+| 
T Consensus       180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~  259 (353)
T PF00930_consen  180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY  259 (353)
T ss_dssp             HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred             CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence            1234457888999988844432  222   24667788776553333211 0111122244444 54 45566666777 


Q ss_pred             -cEEEEEcCCCcEEEEEccCCCcEEE-EEEecC
Q 022910          259 -SVHMVNITTGKVVSSLVSHTDSIEC-IGFSRS  289 (290)
Q Consensus       259 -~i~~wd~~~~~~~~~~~~~~~~v~~-i~~s~d  289 (290)
                       .|++++...+. ...+....-.|.. +.|+++
T Consensus       260 ~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~  291 (353)
T PF00930_consen  260 RHLYLYDLDGGK-PRQLTSGDWEVTSILGWDED  291 (353)
T ss_dssp             EEEEEEETTSSE-EEESS-SSS-EEEEEEEECT
T ss_pred             cEEEEEcccccc-eeccccCceeecccceEcCC
Confidence             46666665554 4456555556754 445543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.44  E-value=0.00036  Score=53.88  Aligned_cols=169  Identities=15%  Similarity=0.122  Sum_probs=103.6

Q ss_pred             ceeeeccCCcCEEEEEECCC------------------CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC
Q 022910           56 STHIFSGHSDEVYSVACSPT------------------DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM  117 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~------------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~  117 (290)
                      .....-.|...+.++.+-..                  -+.+++.|+..|.+++.+.+++.....+.....--......+
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~  103 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF  103 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC
Confidence            44455567777777665430                  124577889999999999999977766653322112234567


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc--EEEeeecCCCCeE
Q 022910          118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVT  195 (290)
Q Consensus       118 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~  195 (290)
                      ++..|..++.|++.+..|..+...+...+...+...+-+..|-...|+.+...|.+.--......  .+.... ..++|.
T Consensus       104 ~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF  182 (354)
T KOG4649|consen  104 DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIF  182 (354)
T ss_pred             CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCccc
Confidence            89999999999999999999999998887666655555666644455555555666555444331  111111 122332


Q ss_pred             E--EEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEE
Q 022910          196 C--GDFTPDGKTICTGSDDATLRVWNPKSGENIHVI  229 (290)
Q Consensus       196 ~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  229 (290)
                      +  ++   -+..+..++-||.+.-++ ..|+.+...
T Consensus       183 ~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~  214 (354)
T KOG4649|consen  183 ASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRP  214 (354)
T ss_pred             cCcee---ccceEEEEEeccEEEEEc-CCCcEEEee
Confidence            2  11   133455566677776666 444444433

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.43  E-value=9.7e-05  Score=64.69  Aligned_cols=185  Identities=14%  Similarity=0.187  Sum_probs=117.6

Q ss_pred             CCCcEEEEEccCCeeeeeeccccC--------------------CE-EEEEECCCCCEEEEEeCCC--------------
Q 022910           85 GDDKGFFWRINQGDWASEIQGHKD--------------------SV-SSLAFSMDGQLLASGGLDG--------------  129 (290)
Q Consensus        85 ~dg~i~iw~~~~~~~~~~~~~~~~--------------------~i-~~~~~~~~~~~l~~~~~dg--------------  129 (290)
                      .+|.+..+|..+++.+..+.....                    .+ ...++.+.+..++.++.++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            367889999999988776643211                    01 1234444566777777655              


Q ss_pred             ----cEEEEcCCCCceEEEEecCCCCEE------EEEEc----CCCC---EEEEeeCCCeEEEEECCcccEEEeeecCCC
Q 022910          130 ----LVQIWDPSSGNLKCTLEGPGGGVE------WVSWH----PRGH---IVLAGSEDSTVWMWNADRAAYLNMFSGHGS  192 (290)
Q Consensus       130 ----~i~i~d~~~~~~~~~~~~~~~~i~------~i~~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  192 (290)
                          .|.-+|+.+++.+-.++.......      ...+.    -++.   .+++++.+|.++.+|.++++.+-.....  
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--  330 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--  330 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence                799999999998877653211111      00111    1232   6788889999999999999987665421  


Q ss_pred             CeEEEEEcCCCCEEEEE------------------eCCCeEEEEcCCCCeeeEEEeCCCCcc-----cCe--EEEEEcCC
Q 022910          193 SVTCGDFTPDGKTICTG------------------SDDATLRVWNPKSGENIHVIRGHPYHT-----EGL--TCLTISAD  247 (290)
Q Consensus       193 ~i~~~~~~~~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v--~~~~~~~~  247 (290)
                       ...+..+|  ..++++                  ..+|.|.-+|+.+++.+..........     .+.  ..+..  .
T Consensus       331 -~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~  405 (488)
T cd00216         331 -EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--A  405 (488)
T ss_pred             -ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--c
Confidence             11233444  333332                  246789999999999877665421000     111  11222  4


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          248 STLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       248 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      +.+|++++.||.|+.+|..+|+.+.+++.
T Consensus       406 g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         406 GNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            67888999999999999999999988764

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.41  E-value=6.6e-05  Score=64.18  Aligned_cols=191  Identities=13%  Similarity=0.110  Sum_probs=100.5

Q ss_pred             CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      .+...-..+.+....-....+.++| .++.++++ .+|...||.....+...     .+.-....|.+.+ .+|+-...+
T Consensus        18 g~~~~l~~k~lg~~~~~p~~ls~np-ngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~   89 (443)
T PF04053_consen   18 GERLPLSVKELGSCEIYPQSLSHNP-NGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSS   89 (443)
T ss_dssp             TS-B----EEEEE-SS--SEEEE-T-TSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS
T ss_pred             CceeeEEeccCCCCCcCCeeEEECC-CCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCC
Confidence            3344455566666666788999999 66666664 46888888844433322     2234567898844 566666688


Q ss_pred             cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  209 (290)
                      +|.|+.--+.+....++.. ..+..|..   |.+|+..+. +.|.+||..+++.++++...  +|..+.|++++.+++..
T Consensus        90 ~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~  162 (443)
T PF04053_consen   90 TIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALV  162 (443)
T ss_dssp             -EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE
T ss_pred             eEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEE
Confidence            9999632233332333322 23444543   777777765 48999999999999998743  48999999999999988


Q ss_pred             eCCCeEEEEcCCCC-----------eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910          210 SDDATLRVWNPKSG-----------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (290)
Q Consensus       210 ~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  262 (290)
                      +.+ .+.|++....           ..+..+..   ....|.+.+|..+ -++++. .. +|+.
T Consensus       163 t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~d-~fiYtT-~~-~lkY  219 (443)
T PF04053_consen  163 TKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVED-CFIYTT-SN-HLKY  219 (443)
T ss_dssp             -S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEETT-EEEEE--TT-EEEE
T ss_pred             eCC-eEEEEEecchhcccccccCchhceEEEEE---ecceeEEEEEEcC-EEEEEc-CC-eEEE
Confidence            765 5777764322           02233321   2456777888755 333333 33 5554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=1.7e-05  Score=66.69  Aligned_cols=139  Identities=18%  Similarity=0.216  Sum_probs=97.1

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC-------EEEEEeCCCcEEEEcCCCCce--EEEEecC-
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-------LLASGGLDGLVQIWDPSSGNL--KCTLEGP-  148 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~--~~~~~~~-  148 (290)
                      +|.++.....++-.|++.|+.+...+-+.. |.-+.+.|+.+       .-+.|-.+..|.-||.+-...  +.....| 
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            344555566788889999999998886665 77788888654       233455678899999874322  2222222 


Q ss_pred             ---CCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910          149 ---GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (290)
Q Consensus       149 ---~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  220 (290)
                         .....|.+-..+ .++++|+.+|.|++||--..+....+.+.+.+|..+..+.+|++|++.+.. .|.+.++
T Consensus       427 y~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~t  499 (644)
T KOG2395|consen  427 YSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLLIDT  499 (644)
T ss_pred             cccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEEEEE
Confidence               223555555444 489999999999999974445556678889999999999999998877644 4555554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.40  E-value=0.00057  Score=55.50  Aligned_cols=198  Identities=13%  Similarity=0.082  Sum_probs=118.2

Q ss_pred             EEECCCCCcEEEEe--cCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCC-CCceEEEE
Q 022910           70 VACSPTDATLVATG--GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPS-SGNLKCTL  145 (290)
Q Consensus        70 ~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~-~~~~~~~~  145 (290)
                      ++++. ++++++..  +-.-.|.|-|+...+.+..+.- .++ ..+  .|. .+.|.+.+.||.+.-..+. .|+.....
T Consensus       100 ~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC-~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen  100 FALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGC-WLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             EEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSE-EEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             eEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCE-EEE--EecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence            45666 44444332  3334678888888887776652 222 222  232 2457788889999988887 45554322


Q ss_pred             e----cCCCCEE-EEEEcCCCCEEEEeeCCCeEEEEECCcccEE--Eeeec----------CCCCeEEEEEcCCCCEEEE
Q 022910          146 E----GPGGGVE-WVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSG----------HGSSVTCGDFTPDGKTICT  208 (290)
Q Consensus       146 ~----~~~~~i~-~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~----------~~~~i~~~~~~~~~~~l~~  208 (290)
                      .    ....++. .-++...+..++..+..|.|+-.|+......  ..+..          ..+.-.-+++++..+.|++
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence            1    1112222 2334445556666788899999998765422  22211          1233455778876666655


Q ss_pred             EeC---CC-------eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC-EEEEE-eCCCcEEEEEcCCCcEEEEEcc
Q 022910          209 GSD---DA-------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSG-SKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       209 ~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      --.   .|       .|-+||+.+++.+..+..    ..++.+|..+.+.+ +|++. ..++.|.+||..+|++++++..
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            321   11       488889999999988873    45677899998654 66554 4578999999999999999985

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.37  E-value=0.00035  Score=57.82  Aligned_cols=181  Identities=18%  Similarity=0.204  Sum_probs=107.9

Q ss_pred             CcEEEEecC----------CCcEEEEEccCC-----eeeee-eccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc
Q 022910           77 ATLVATGGG----------DDKGFFWRINQG-----DWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (290)
Q Consensus        77 ~~~l~~~~~----------dg~i~iw~~~~~-----~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (290)
                      ..+|++|+.          .|.|.++++...     +.... -....++|++++-. ++ +|+++. .+.|.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence            567777643          289999999884     22211 12357889998876 34 455444 4889999998887


Q ss_pred             -eEEEEec-CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc-ccEEEee--ecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910          141 -LKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMF--SGHGSSVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       141 -~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                       ....... ....+.++...  ++++++|..-..+.++..+. ...+..+  ......++++.|.++++.++++..+|.|
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl  196 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL  196 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred             cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence             4433322 22356666654  66999999888888775443 2212222  2245668888898666799999999999


Q ss_pred             EEEcCCC-------Ce-eeEEEeCCCCcccCeEEE---EEcCC--C------CEEEEEeCCCcEEEE
Q 022910          216 RVWNPKS-------GE-NIHVIRGHPYHTEGLTCL---TISAD--S------TLALSGSKDGSVHMV  263 (290)
Q Consensus       216 ~i~d~~~-------~~-~~~~~~~~~~~~~~v~~~---~~~~~--~------~~l~~~~~dg~i~~w  263 (290)
                      .++....       +. .+....... ....|+++   ++.|.  +      ..++.++.+|.|.+.
T Consensus       197 ~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  197 FVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            9987652       22 222222221 45567777   54551  2      247788889988743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.37  E-value=9.1e-05  Score=61.29  Aligned_cols=174  Identities=11%  Similarity=0.140  Sum_probs=106.9

Q ss_pred             CcEEEEEccCCeeeeeeccc-cCCEEE---EEECCC----CCEEEEEeC----------CCcEEEEcCCCC----ceEEE
Q 022910           87 DKGFFWRINQGDWASEIQGH-KDSVSS---LAFSMD----GQLLASGGL----------DGLVQIWDPSSG----NLKCT  144 (290)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~-~~~i~~---~~~~~~----~~~l~~~~~----------dg~i~i~d~~~~----~~~~~  144 (290)
                      ..|++.|..+.+.+..+.-. ...+.+   +.+..+    ..+|++|+.          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35788888777766554421 223343   334332    457777753          289999999884    12221


Q ss_pred             E--ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-EEEeeec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910          145 L--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (290)
Q Consensus       145 ~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  220 (290)
                      +  ....++|++++-- .+. |+++. .+.|.+|++...+ ....-.. ....+.++...  ++++++|..-..|.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence            1  2246789988876 444 44444 3789999998777 4433221 33466666654  669999998888887744


Q ss_pred             CC-CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          221 KS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       221 ~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      .. ...+..+.... ....++++.|-+++..++++..+|.|.++...
T Consensus       157 ~~~~~~l~~va~d~-~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  157 DEENNKLILVARDY-QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             ETTTE-EEEEEEES-S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EccCCEEEEEEecC-CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            33 33333443221 45568888888666799999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=3.2e-06  Score=72.17  Aligned_cols=95  Identities=20%  Similarity=0.250  Sum_probs=79.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910          190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT-CLTISADSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       190 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                      ....+..+.|+|.-.++|++..+|.|.+..+. .+.+.++..   +...++ +++|.|||++||+|-.||+|++.|+.++
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~---p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI---PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC---CCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            34568889999999999999999999999887 677777775   445555 9999999999999999999999999999


Q ss_pred             cEEEEEc-cCCCcEEEEEEec
Q 022910          269 KVVSSLV-SHTDSIECIGFSR  288 (290)
Q Consensus       269 ~~~~~~~-~~~~~v~~i~~s~  288 (290)
                      ..+..+. .....|+++-|+|
T Consensus        95 ~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   95 GRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             Cceeccccccccchheeeccc
Confidence            8887732 2356888888864

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.33  E-value=0.00014  Score=61.40  Aligned_cols=201  Identities=13%  Similarity=0.102  Sum_probs=113.7

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee--cc------ccCCEEEEEECC-----CC-
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--QG------HKDSVSSLAFSM-----DG-  119 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~------~~~~i~~~~~~~-----~~-  119 (290)
                      -.|...+...+++|++++.+.  =-++|.|..+|.+.|.|++....+..-  ..      ....|+++.|..     ++ 
T Consensus        76 f~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   76 FLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             cCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            456677777899999999984  348889999999999999887766652  12      234688888862     22 


Q ss_pred             --CEEEEEeCCCcEEEEcCC--C-CceE----EEEecCCCCEEEEE-EcCC--------------------CCEEEEeeC
Q 022910          120 --QLLASGGLDGLVQIWDPS--S-GNLK----CTLEGPGGGVEWVS-WHPR--------------------GHIVLAGSE  169 (290)
Q Consensus       120 --~~l~~~~~dg~i~i~d~~--~-~~~~----~~~~~~~~~i~~i~-~~~~--------------------~~~l~~~~~  169 (290)
                        -.+++|+..|.+.+|.+.  . +...    .....+.++|..|. ++.+                    -+-+++...
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              278899999999999874  1 2111    11123445555554 3221                    023444455


Q ss_pred             CCeEEEEECCcccEEEeeecCCCCeEEEEEc-----CCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC-CcccCeEEEE
Q 022910          170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFT-----PDGKTICTGSDDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLT  243 (290)
Q Consensus       170 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~  243 (290)
                      ...++++..-+.+...+..........+.+-     ..+..|++-..+|.|++|.+-..+.+..+.... .....+....
T Consensus       234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss  313 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS  313 (395)
T ss_dssp             SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred             ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence            6889999998877665554332333444453     256678888999999999999888877776532 1222344566


Q ss_pred             EcCCCCEEEEEeC
Q 022910          244 ISADSTLALSGSK  256 (290)
Q Consensus       244 ~~~~~~~l~~~~~  256 (290)
                      ++++|..++..+.
T Consensus       314 is~~Gdi~~~~gp  326 (395)
T PF08596_consen  314 ISRNGDIFYWTGP  326 (395)
T ss_dssp             E-TTS-EEEE-SS
T ss_pred             ECCCCCEEEEeCc
Confidence            7888887766654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.32  E-value=0.00023  Score=59.72  Aligned_cols=227  Identities=17%  Similarity=0.196  Sum_probs=122.9

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee-cc---------------c-cCCEEEEEECCCCC
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QG---------------H-KDSVSSLAFSMDGQ  120 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~---------------~-~~~i~~~~~~~~~~  120 (290)
                      ..+......+....|+| +++.+|... ++.|.+++..++.....- .+               - -+.-..+-|||+++
T Consensus        36 ~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~  113 (353)
T PF00930_consen   36 TPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK  113 (353)
T ss_dssp             EESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS
T ss_pred             EECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCC
Confidence            33333366788999999 566665554 578999988776433221 11               0 11235688999999


Q ss_pred             EEEEEeCC-C-----------------------------------cEEEEcCCCCceEE-EE----ecCCCCEEEEEEcC
Q 022910          121 LLASGGLD-G-----------------------------------LVQIWDPSSGNLKC-TL----EGPGGGVEWVSWHP  159 (290)
Q Consensus       121 ~l~~~~~d-g-----------------------------------~i~i~d~~~~~~~~-~~----~~~~~~i~~i~~~~  159 (290)
                      +||....| .                                   .+.|+++.+++... ..    ......+..+.|.+
T Consensus       114 ~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~  193 (353)
T PF00930_consen  114 YLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP  193 (353)
T ss_dssp             EEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE
T ss_pred             EEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC
Confidence            98876432 1                                   13344554444321 11    12234577888998


Q ss_pred             CCCEEEEeeC-----CCeEEEEECCcccEEEeeec-CCCCe---EEEEEc-CCCC-EEEEEeCCC--eEEEEcCCCCeee
Q 022910          160 RGHIVLAGSE-----DSTVWMWNADRAAYLNMFSG-HGSSV---TCGDFT-PDGK-TICTGSDDA--TLRVWNPKSGENI  226 (290)
Q Consensus       160 ~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~-~~~~i---~~~~~~-~~~~-~l~~~~~dg--~i~i~d~~~~~~~  226 (290)
                      ++..|+..-.     ...+.++|..++........ ....|   ..+.|. +++. +|.....+|  +|.+++...+...
T Consensus       194 d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~  273 (353)
T PF00930_consen  194 DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR  273 (353)
T ss_dssp             TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE
T ss_pred             CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee
Confidence            8884444322     22477778776643322221 12222   244454 5554 455555666  4666677666533


Q ss_pred             EEEeCCCCcccCeE-EEEEcCCCCEE-EEEeCC----CcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          227 HVIRGHPYHTEGLT-CLTISADSTLA-LSGSKD----GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       227 ~~~~~~~~~~~~v~-~~~~~~~~~~l-~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                       .+..   ..-.|+ .+.|+++++.| +++..+    ..|+..++..+..+..+....+.-..+.|||+|
T Consensus       274 -~lT~---G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg  339 (353)
T PF00930_consen  274 -QLTS---GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG  339 (353)
T ss_dssp             -ESS----SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred             -cccc---CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence             3332   344564 46778876544 455543    356666776345566666544433799999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=4.1e-06  Score=71.59  Aligned_cols=95  Identities=22%  Similarity=0.285  Sum_probs=80.6

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEE-EEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (290)
                      -.-.|.-+.|+| ...++|++..+|.|.+..++ .+.+.++.-|...++ +++|.|+|+.||+|-.||+|++.|+.++..
T Consensus        19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            345678899999 88899999999999999998 777888886777777 999999999999999999999999999988


Q ss_pred             EEEEe-cCCCCEEEEEEcC
Q 022910          142 KCTLE-GPGGGVEWVSWHP  159 (290)
Q Consensus       142 ~~~~~-~~~~~i~~i~~~~  159 (290)
                      +..+. .....|.++.|.+
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            77632 2445688888864

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.32  E-value=1.5e-05  Score=69.08  Aligned_cols=117  Identities=15%  Similarity=0.200  Sum_probs=90.1

Q ss_pred             CEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEe-eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeee---
Q 022910          151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI---  226 (290)
Q Consensus       151 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---  226 (290)
                      .+.--+++..+++++.|+.-|.+++|+-..++.... ..+..+.+..+.+++...++|+|+..|.|.++-+....+.   
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            344455666789999999999999999766653322 2234556677788888889999999999999988764432   


Q ss_pred             EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      ..-..+..|...|++++|++++..|++|...|+|.+-.+.+
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            22233334788999999999999999999999999988877

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.31  E-value=0.0017  Score=55.83  Aligned_cols=215  Identities=15%  Similarity=0.143  Sum_probs=117.4

Q ss_pred             CEEEEEECCCCCcEEEEecCCC----cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC-----------c
Q 022910           66 EVYSVACSPTDATLVATGGGDD----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-----------L  130 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------~  130 (290)
                      .+...+++|++..++++-+..|    .++++|+.+++.+...-.... ...+.|.++++.|+....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            4446789994444444434444    599999999977653321111 22399999988766654333           3


Q ss_pred             EEEEcCCCCceE--EEEecCCCC--EEEEEEcCCCCEEEEeeC---C-CeEEEEECCcc-----cEEEeeecCCCCeEEE
Q 022910          131 VQIWDPSSGNLK--CTLEGPGGG--VEWVSWHPRGHIVLAGSE---D-STVWMWNADRA-----AYLNMFSGHGSSVTCG  197 (290)
Q Consensus       131 i~i~d~~~~~~~--~~~~~~~~~--i~~i~~~~~~~~l~~~~~---d-g~i~i~d~~~~-----~~~~~~~~~~~~i~~~  197 (290)
                      |+.|.+.+....  ..+......  ...+..++++++|+....   + ..+++.++...     ..........+....+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            788888776432  445443332  567889999998776443   2 45888888874     3333333233333444


Q ss_pred             EEcCCCCEEEEEe---CCCeEEEEcCCCCee--eE-EEeCCCCccc--CeEEEEEcCCCCEEEEEeCCC--cEEEEEcCC
Q 022910          198 DFTPDGKTICTGS---DDATLRVWNPKSGEN--IH-VIRGHPYHTE--GLTCLTISADSTLALSGSKDG--SVHMVNITT  267 (290)
Q Consensus       198 ~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~-~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~  267 (290)
                      ... .+.+++...   ..+.|...++.+...  .. .+..   +..  .+..+... .+.+++....++  .|+++++..
T Consensus       284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~~  358 (414)
T PF02897_consen  284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLDD  358 (414)
T ss_dssp             EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-
T ss_pred             Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECCC
Confidence            443 343444332   246777788877653  22 3332   233  45555543 233444444444  689999984


Q ss_pred             CcEEEEEcc-CCCcEEEEEE
Q 022910          268 GKVVSSLVS-HTDSIECIGF  286 (290)
Q Consensus       268 ~~~~~~~~~-~~~~v~~i~~  286 (290)
                      +.....+.. -.+.|..+..
T Consensus       359 ~~~~~~~~~p~~g~v~~~~~  378 (414)
T PF02897_consen  359 GKESREIPLPEAGSVSGVSG  378 (414)
T ss_dssp             TEEEEEEESSSSSEEEEEES
T ss_pred             CcEEeeecCCcceEEeccCC
Confidence            444444443 2344555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.28  E-value=0.0013  Score=53.17  Aligned_cols=142  Identities=17%  Similarity=0.222  Sum_probs=86.6

Q ss_pred             CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE----------
Q 022910           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL----------  145 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------  145 (290)
                      .+..|+.|+.+| +.++++........+. +..+|..+...|.-+.+++-+ |+.|+++++.........          
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            456778888888 8999983332222222 233499999999888777765 599999998765443311          


Q ss_pred             ----ecCCCCEEEEE--EcCCCCEEEEeeCCCeEEEEECCcc-----cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 022910          146 ----EGPGGGVEWVS--WHPRGHIVLAGSEDSTVWMWNADRA-----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (290)
Q Consensus       146 ----~~~~~~i~~i~--~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  214 (290)
                          ......+...+  -...+...++......|.+|.....     +..+.+. ....+..++|.  ++.++.|..++ 
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-  158 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-  158 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-
Confidence                01122344444  1123333333444458888876542     3455554 45778899998  55677776554 


Q ss_pred             EEEEcCCCCe
Q 022910          215 LRVWNPKSGE  224 (290)
Q Consensus       215 i~i~d~~~~~  224 (290)
                      ..+.|+.++.
T Consensus       159 f~~idl~~~~  168 (275)
T PF00780_consen  159 FYLIDLNTGS  168 (275)
T ss_pred             eEEEecCCCC
Confidence            6677776543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=98.26  E-value=7.7e-05  Score=66.24  Aligned_cols=195  Identities=12%  Similarity=0.109  Sum_probs=102.6

Q ss_pred             CCcEEEEecCC------CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCCC-----cEEEEcCCCCceE
Q 022910           76 DATLVATGGGD------DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLK  142 (290)
Q Consensus        76 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~  142 (290)
                      ++.+++.|+.+      ..+..||..+......  +.........+.+  +++..+.|+.++     .+..||..+.+..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            45677777753      3477888777654322  2211122222222  677777777653     4788998876543


Q ss_pred             EE--EecCCCCEEEEEEcCCCCEEEEeeCCC-----------------------eEEEEECCcccEEE--eeecCCCCeE
Q 022910          143 CT--LEGPGGGVEWVSWHPRGHIVLAGSEDS-----------------------TVWMWNADRAAYLN--MFSGHGSSVT  195 (290)
Q Consensus       143 ~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~--~~~~~~~~i~  195 (290)
                      ..  +.........+.+  ++.+.+.|+.++                       .+..||..+.+-..  .+........
T Consensus       381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~  458 (557)
T PHA02713        381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG  458 (557)
T ss_pred             ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence            21  1111111122222  677777777542                       47778877664322  2211111111


Q ss_pred             EEEEcCCCCEEEEEeCC------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCC
Q 022910          196 CGDFTPDGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG--SVHMVNITT  267 (290)
Q Consensus       196 ~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~  267 (290)
                      .+.+  ++++.++|+.+      ..+..||..+......+...+........+.+  ++++.++|+.+|  .+-.||..+
T Consensus       459 ~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        459 VVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             EEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence            2222  46666777654      24678998872222222222212223333333  688999999888  788888877


Q ss_pred             CcEEEEEccCC
Q 022910          268 GKVVSSLVSHT  278 (290)
Q Consensus       268 ~~~~~~~~~~~  278 (290)
                      .+=-.....|.
T Consensus       535 ~~W~~~~~~~~  545 (557)
T PHA02713        535 YEWNHICHQHS  545 (557)
T ss_pred             ccccchhhhcC
Confidence            65433333343

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.19  E-value=0.0022  Score=52.17  Aligned_cols=217  Identities=16%  Similarity=0.128  Sum_probs=130.6

Q ss_pred             EEEECCCCCcEEEEec----------CCCcEEEEEccCCeeeeeeccccC-------CEEEEEECCCCCEEEEE--eCCC
Q 022910           69 SVACSPTDATLVATGG----------GDDKGFFWRINQGDWASEIQGHKD-------SVSSLAFSMDGQLLASG--GLDG  129 (290)
Q Consensus        69 ~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~--~~dg  129 (290)
                      .+..+| +++.+++++          ..-.|.+||..+......+.-...       ....++++.+++++++.  +-..
T Consensus        40 ~~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   40 NVALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             ceeECC-CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            356788 555555432          234699999999877664432111       12345778899987775  3456


Q ss_pred             cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC-cccEEEee----ecCCCCeE-EEEEcCCC
Q 022910          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYLNMF----SGHGSSVT-CGDFTPDG  203 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~----~~~~~~i~-~~~~~~~~  203 (290)
                      +|.|.|+..++.+..+..+.  ...+--++ ..-|.+-+.||.+.-..+. .++..++.    .....++. .-++...+
T Consensus       119 SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~  195 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG  195 (342)
T ss_dssp             EEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred             eEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence            79999999999988887654  22222222 2458888889999999887 45443222    22222332 22344455


Q ss_pred             CEEEEEeCCCeEEEEcCCCCeee--EEEeCC-------CCcccCeEEEEEcCCCCEEEEEeC---CC-------cEEEEE
Q 022910          204 KTICTGSDDATLRVWNPKSGENI--HVIRGH-------PYHTEGLTCLTISADSTLALSGSK---DG-------SVHMVN  264 (290)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~---dg-------~i~~wd  264 (290)
                      ..++--+..|.|+-.|+......  ..+...       ....+...-+++++..+.|++--.   +|       .|.++|
T Consensus       196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D  275 (342)
T PF06433_consen  196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD  275 (342)
T ss_dssp             TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred             CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence            55655778999999888755422  122111       112344556788875555554321   21       599999


Q ss_pred             cCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          265 ITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       265 ~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +.+++.+.++.. ..++.+|+.+.++
T Consensus       276 ~~t~krv~Ri~l-~~~~~Si~Vsqd~  300 (342)
T PF06433_consen  276 LKTHKRVARIPL-EHPIDSIAVSQDD  300 (342)
T ss_dssp             TTTTEEEEEEEE-EEEESEEEEESSS
T ss_pred             CCCCeEEEEEeC-CCccceEEEccCC
Confidence            999999999985 3568888887653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.16  E-value=0.00048  Score=61.29  Aligned_cols=188  Identities=14%  Similarity=0.156  Sum_probs=102.3

Q ss_pred             cCEEEEEECCCCCcEEEEec-----CCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC-----------
Q 022910           65 DEVYSVACSPTDATLVATGG-----GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-----------  128 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------  128 (290)
                      ..+...+++|++....++..     .+..-.||-...+.....+.. ....+.-.|+|+|+.|++.+..           
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            36778899995555544442     244444554332222233321 2237888999998877776532           


Q ss_pred             -CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEE---EECCccc-EE---Eeee-cCCCCeEEEEE
Q 022910          129 -GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM---WNADRAA-YL---NMFS-GHGSSVTCGDF  199 (290)
Q Consensus       129 -g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i---~d~~~~~-~~---~~~~-~~~~~i~~~~~  199 (290)
                       +.+.+..+..+....   ...+.|..+.|+|+|..++... +|.|++   -....+. .+   ..+. .....+..+.|
T Consensus       429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence             233333443333222   2345799999999999888766 477777   4433443 11   1122 23334688999


Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCC-CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910          200 TPDGKTICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH  261 (290)
Q Consensus       200 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  261 (290)
                      .+++.++ ++..++.-.+|.+.- +.....+.. .....++..++-++.  .|+....+|.+.
T Consensus       505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~-~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        505 RTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPS-RNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ecCCEEE-EEecCCCCceEEEecCCccccccCC-CCccCceEEEecCCc--eEEEEcCCceEE
Confidence            9988754 555544444444321 222122122 113456777777763  455566666443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.15  E-value=0.00066  Score=45.60  Aligned_cols=100  Identities=15%  Similarity=0.221  Sum_probs=70.2

Q ss_pred             EEEEEEcC---C-CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeE
Q 022910          152 VEWVSWHP---R-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH  227 (290)
Q Consensus       152 i~~i~~~~---~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  227 (290)
                      |++|++..   + .+.|++|+.|..|++|+-.  ..+..+.. ...|++++-... ..|+.+..+|+|-+|+..  ..+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence            55666554   3 2589999999999999743  55666663 456777776655 678999999999999863  4445


Q ss_pred             EEeCCCCcccCeEEEEEcC-C--C-CEEEEEeCCCcEE
Q 022910          228 VIRGHPYHTEGLTCLTISA-D--S-TLALSGSKDGSVH  261 (290)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~dg~i~  261 (290)
                      .++.    +..++++++.. +  | .-|++|-.+|.|-
T Consensus        76 RiKS----K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKS----KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eecc----CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            5553    44467776654 2  2 3688898898874

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=98.14  E-value=0.00025  Score=59.87  Aligned_cols=143  Identities=15%  Similarity=0.235  Sum_probs=91.7

Q ss_pred             CCCCEEE-EEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-------EEEEeeCCCeEEEEECCccc-EEEee
Q 022910          117 MDGQLLA-SGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-------IVLAGSEDSTVWMWNADRAA-YLNMF  187 (290)
Q Consensus       117 ~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~dg~i~i~d~~~~~-~~~~~  187 (290)
                      .+.++|+ .+..-..++-.|++.|+.+..+..+...  -+.|.|..+       .-++|-.+..|.-.|.+-.. .+...
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            3444444 4555677888999999999999877763  577777432       33445555666666655322 22211


Q ss_pred             ecCCCCeEEEEEcC----CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 022910          188 SGHGSSVTCGDFTP----DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV  263 (290)
Q Consensus       188 ~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w  263 (290)
                      . ....++.-.|+.    ...++++++..|.|++||.-.-+....+++   ....|..+..+.+|.++++.+.. .+.+-
T Consensus       555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~---lG~aIk~idvta~Gk~ilaTCk~-yllL~  629 (776)
T COG5167         555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPG---LGDAIKHIDVTANGKHILATCKN-YLLLT  629 (776)
T ss_pred             e-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcc---cccceeeeEeecCCcEEEEeecc-eEEEE
Confidence            1 112222222332    456899999999999999754443344444   67789999999999998877754 67777


Q ss_pred             EcC
Q 022910          264 NIT  266 (290)
Q Consensus       264 d~~  266 (290)
                      |++
T Consensus       630 d~~  632 (776)
T COG5167         630 DVP  632 (776)
T ss_pred             ecc
Confidence            764

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.13  E-value=0.0042  Score=53.15  Aligned_cols=183  Identities=10%  Similarity=0.047  Sum_probs=94.6

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee-------ccccCCEEEEEECCCCCEEEEEeC
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-------QGHKDSVSSLAFSMDGQLLASGGL  127 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~  127 (290)
                      ..+..+.--.+.|.++.|+. +..++ +-..+|.+++|++.... ...+       ......+....+..+|  ++.-..
T Consensus        71 ~ll~~i~w~~~~iv~~~wt~-~e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~  145 (410)
T PF04841_consen   71 KLLSSIPWDSGRIVGMGWTD-DEELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTG  145 (410)
T ss_pred             CEeEEEEECCCCEEEEEECC-CCeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--EEEECC
Confidence            33333333347888888887 55555 44579999999986433 1111       1112223333333344  333334


Q ss_pred             CCcEEEEcCCCCc-eEEEEecCCC---------CEEE-EEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEE
Q 022910          128 DGLVQIWDPSSGN-LKCTLEGPGG---------GVEW-VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC  196 (290)
Q Consensus       128 dg~i~i~d~~~~~-~~~~~~~~~~---------~i~~-i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  196 (290)
                      ++.+.+..-.... ....+.....         .... ..++.+....+....++.+.+.+-...+.   +. ..+++..
T Consensus       146 ~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~  221 (410)
T PF04841_consen  146 NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIK  221 (410)
T ss_pred             CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEE
Confidence            4555544322211 1111110000         0000 22333444444444555555444322211   21 2468999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCC
Q 022910          197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS  248 (290)
Q Consensus       197 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  248 (290)
                      |++||++++++.-..+|.+.+....-.+....+...  .......|.|+-+.
T Consensus       222 iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~--~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  222 IAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD--SKSPPKQMAWCGND  271 (410)
T ss_pred             EEECCCCCEEEEEECCCCEEEEECcccceeEEeecC--cCCCCcEEEEECCC
Confidence            999999999999999999999876555554444432  23455677776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.11  E-value=0.0043  Score=54.87  Aligned_cols=188  Identities=10%  Similarity=0.179  Sum_probs=115.2

Q ss_pred             CCcEEEEEccCCeeeeeecccc-------------------------------CCEE-EEEECCCCCEEEEEeCC-----
Q 022910           86 DDKGFFWRINQGDWASEIQGHK-------------------------------DSVS-SLAFSMDGQLLASGGLD-----  128 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~-------------------------------~~i~-~~~~~~~~~~l~~~~~d-----  128 (290)
                      +|.|..+|..+++.+..+..-.                               ..+. .+.+.|...+++.+...     
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~  259 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN  259 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence            6889999999988776543210                               0111 23556666666665421     


Q ss_pred             C-----------cEEEEcCCCCceEEEEecCCCCE---------EEEEEcCCCC---EEEEeeCCCeEEEEECCcccEEE
Q 022910          129 G-----------LVQIWDPSSGNLKCTLEGPGGGV---------EWVSWHPRGH---IVLAGSEDSTVWMWNADRAAYLN  185 (290)
Q Consensus       129 g-----------~i~i~d~~~~~~~~~~~~~~~~i---------~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~  185 (290)
                      +           +|.-.|+++|+..-.++.....+         .-+.+..+|+   .++.+..+|.+++.|-++++.+.
T Consensus       260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            2           67788999999887766422211         2223334565   78899999999999999998752


Q ss_pred             e--------e----ecCC-CCe----------------------------EEEEEcCCCCEEEEEeCC------------
Q 022910          186 M--------F----SGHG-SSV----------------------------TCGDFTPDGKTICTGSDD------------  212 (290)
Q Consensus       186 ~--------~----~~~~-~~i----------------------------~~~~~~~~~~~l~~~~~d------------  212 (290)
                      .        +    .... .++                            ..++++|...++++...+            
T Consensus       340 ~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~  419 (527)
T TIGR03075       340 AEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSY  419 (527)
T ss_pred             cccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEeccccccccccccccc
Confidence            1        1    0000 000                            125566655555543322            


Q ss_pred             ---------------------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 022910          213 ---------------------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV  271 (290)
Q Consensus       213 ---------------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  271 (290)
                                           |.|.-+|+.+++.........   ....+. +.-.+.+++.++.+|.++.+|.++|+.+
T Consensus       420 ~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~---p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       420 KKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDF---PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEEL  495 (527)
T ss_pred             CCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCC---CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEe
Confidence                                 457778888887766655321   111111 1114557778888999999999999999


Q ss_pred             EEEccC
Q 022910          272 SSLVSH  277 (290)
Q Consensus       272 ~~~~~~  277 (290)
                      .++...
T Consensus       496 w~~~~g  501 (527)
T TIGR03075       496 WKFKTG  501 (527)
T ss_pred             EEEeCC
Confidence            988753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.11  E-value=0.00056  Score=60.86  Aligned_cols=147  Identities=13%  Similarity=0.093  Sum_probs=88.3

Q ss_pred             CCEEEEEECCCCCEEEEEe------CCC--cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC---------
Q 022910          108 DSVSSLAFSMDGQLLASGG------LDG--LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---------  170 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------  170 (290)
                      ..+...+++|+|+.++...      .++  .|.+++.. +.. ..+... ...+.-.|+|+|..|++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678899999999877765      243  45555542 222 333222 237889999998877776532         


Q ss_pred             ---CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEE---EcCCCCeeeEE-----EeCCCCcccCe
Q 022910          171 ---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV---WNPKSGENIHV-----IRGHPYHTEGL  239 (290)
Q Consensus       171 ---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~~-----~~~~~~~~~~v  239 (290)
                         +.+.+..+..+....   .....|..+.|||+|..++... +|.|++   -....+. ...     +..  .....+
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~--~l~~~~  499 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGP--GLGDTA  499 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeec--ccCCcc
Confidence               234444444433222   2356799999999999988765 477777   4434443 111     111  123346


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          240 TCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       240 ~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      ..+.|.+++.++ ++..++...+|.+
T Consensus       500 ~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        500 VSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             ccceEecCCEEE-EEecCCCCceEEE
Confidence            889999988855 5555444444543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.09  E-value=0.0029  Score=51.56  Aligned_cols=165  Identities=13%  Similarity=0.085  Sum_probs=103.9

Q ss_pred             CcEEEEEccCCeeeeeec-----cccCCEEEEEECCCCCEEEEEeC-----------CCcEEEEcCCCCceEEEEecCCC
Q 022910           87 DKGFFWRINQGDWASEIQ-----GHKDSVSSLAFSMDGQLLASGGL-----------DGLVQIWDPSSGNLKCTLEGPGG  150 (290)
Q Consensus        87 g~i~iw~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~  150 (290)
                      .-+.+++..++..+..+.     ......+.+...|+|.+.++...           -|.|+.++. .+..+..+..+-.
T Consensus        85 ~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~  163 (307)
T COG3386          85 HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT  163 (307)
T ss_pred             cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE
Confidence            346677766555422221     11245567888899886665443           143444443 4555555555455


Q ss_pred             CEEEEEEcCCCCEEEEeeC-CCeEEEEECCc--c----c-EEEeeecCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEcCC
Q 022910          151 GVEWVSWHPRGHIVLAGSE-DSTVWMWNADR--A----A-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-TLRVWNPK  221 (290)
Q Consensus       151 ~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~--~----~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~  221 (290)
                      .-+.|+|||+++.|+.+.. .+.|..|++..  +    + ....+....+..-.++...+|.+.+++...| .|.+|+..
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            5678999999988877766 47788888752  1    1 1222223445666778888888876555554 89999998


Q ss_pred             CCeeeEEEeCCCCcccCeEEEEEc-CCCCEEEEEeC
Q 022910          222 SGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGSK  256 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~  256 (290)
                       ++++..+..   ....+++++|- |+.+.|++.+.
T Consensus       244 -G~l~~~i~l---P~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         244 -GKLLGEIKL---PVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             -CcEEEEEEC---CCCCCccceEeCCCcCEEEEEec
Confidence             888888875   33667788885 34455554443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.09  E-value=0.0046  Score=54.65  Aligned_cols=191  Identities=15%  Similarity=0.203  Sum_probs=119.7

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeecccc-CCEE---E-------EEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHK-DSVS---S-------LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~i~---~-------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (290)
                      .++.++.++.|+-+|..+++.+.++.... ..+.   +       +++  .+..++.++.++.|.-+|..+|+.+-....
T Consensus        71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~  148 (527)
T TIGR03075        71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKN  148 (527)
T ss_pred             EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence            45566778899999999998887765211 1111   1       122  235677888899999999999998866543


Q ss_pred             CCCC-EEEEEEcC--CCCEEEEeeC------CCeEEEEECCcccEEEeeecCCC--------------------------
Q 022910          148 PGGG-VEWVSWHP--RGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGS--------------------------  192 (290)
Q Consensus       148 ~~~~-i~~i~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~--------------------------  192 (290)
                      .... -..+.-+|  .+..++++..      +|.|..+|.++++.+-++.....                          
T Consensus       149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~  228 (527)
T TIGR03075       149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW  228 (527)
T ss_pred             ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence            2110 00111122  1234555432      68999999999987655432110                          


Q ss_pred             -----Ce-EEEEEcCCCCEEEEEeCC-----C-----------eEEEEcCCCCeeeEEEeCCCCcc-------cCeEEEE
Q 022910          193 -----SV-TCGDFTPDGKTICTGSDD-----A-----------TLRVWNPKSGENIHVIRGHPYHT-------EGLTCLT  243 (290)
Q Consensus       193 -----~i-~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~  243 (290)
                           .+ ..+++.|...+++.+...     +           .|.-.|+++|+....++..+ |.       ....-+.
T Consensus       229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~-~D~wD~d~~~~p~l~d  307 (527)
T TIGR03075       229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP-HDEWDYDGVNEMILFD  307 (527)
T ss_pred             ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCC-CCCccccCCCCcEEEE
Confidence                 11 134666666677766522     2           57778999999887776533 21       1122223


Q ss_pred             EcCCCC---EEEEEeCCCcEEEEEcCCCcEEE
Q 022910          244 ISADST---LALSGSKDGSVHMVNITTGKVVS  272 (290)
Q Consensus       244 ~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~  272 (290)
                      +..+|+   .++.+..+|.+++.|..+|+++.
T Consensus       308 ~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       308 LKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             eccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            334665   78899999999999999999874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.07  E-value=0.0011  Score=44.64  Aligned_cols=101  Identities=17%  Similarity=0.173  Sum_probs=69.7

Q ss_pred             EEEEEECC---CCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           67 VYSVACSP---TDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        67 v~~~~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      |++|++..   ++.+.|++|+.|..||+|+-.  ..+..+. -...|+++.-... ..|+.+..+|+|-+|+-  ...+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            56666554   355788899999999999754  5666666 4456777777655 56888999999999975  33344


Q ss_pred             EEecCCCCEEEEEEcC-CC---CEEEEeeCCCeEE
Q 022910          144 TLEGPGGGVEWVSWHP-RG---HIVLAGSEDSTVW  174 (290)
Q Consensus       144 ~~~~~~~~i~~i~~~~-~~---~~l~~~~~dg~i~  174 (290)
                      ..+.... +.++++.. ++   ..|++|-.+|.|-
T Consensus        76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4454333 56665543 22   2788998888874

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=0.00014  Score=66.17  Aligned_cols=96  Identities=20%  Similarity=0.284  Sum_probs=73.9

Q ss_pred             cEEEEecCCCcEEEEEccCC-eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEE
Q 022910           78 TLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS  156 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~  156 (290)
                      ..++.|+..|.+...|+... .+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..+++++.+..+..+.+.+-
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            45778888899988887653 22222233467999999999999999999999999999999999988887766555543


Q ss_pred             ---EcCCCCEEEEeeCCCeE
Q 022910          157 ---WHPRGHIVLAGSEDSTV  173 (290)
Q Consensus       157 ---~~~~~~~l~~~~~dg~i  173 (290)
                         +..++..++++...|.+
T Consensus       180 ~v~~t~~nS~llt~D~~Gsf  199 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGSF  199 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCce
Confidence               44456678888888873

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.02  E-value=0.0023  Score=48.83  Aligned_cols=208  Identities=17%  Similarity=0.208  Sum_probs=117.4

Q ss_pred             CCcEEEEecCCCcEEEEEccCCeeee-eeccccCCEEEEEECCCC---CEEEEEeCCCcEEEEcCCCC--ceEEEEec--
Q 022910           76 DATLVATGGGDDKGFFWRINQGDWAS-EIQGHKDSVSSLAFSMDG---QLLASGGLDGLVQIWDPSSG--NLKCTLEG--  147 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~--~~~~~~~~--  147 (290)
                      .+.++.+--..|.|.-||..+.+... .+.+.  +..++.+--.+   .+.+.++..-.|.-||....  ....++..  
T Consensus        26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~  103 (310)
T KOG4499|consen   26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ  103 (310)
T ss_pred             cceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence            45566666666778889988755333 23222  23333342222   23333343334455663322  22222110  


Q ss_pred             ---CCCCEEEEEEcCCCCEEEEeeC---------CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE-EEeCCCe
Q 022910          148 ---PGGGVEWVSWHPRGHIVLAGSE---------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDAT  214 (290)
Q Consensus       148 ---~~~~i~~i~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~  214 (290)
                         .....+.-..+|+|++++-.-.         .|.++.|-...  .+..+...-.--..++|+.+.+.++ +-+.+-.
T Consensus       104 ~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~  181 (310)
T KOG4499|consen  104 PDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE  181 (310)
T ss_pred             chHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceE
Confidence               1234566677899988432221         24455554321  1222222223336788987766654 5666778


Q ss_pred             EEEEc--CCCCee-----eEEEeCCCC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEE
Q 022910          215 LRVWN--PKSGEN-----IHVIRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF  286 (290)
Q Consensus       215 i~i~d--~~~~~~-----~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~  286 (290)
                      |.-||  ..+|..     +..++.... .....-.++...+|.+.++.-..|+|...|..+|+.+..+.-....|++.+|
T Consensus       182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF  261 (310)
T KOG4499|consen  182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF  261 (310)
T ss_pred             EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence            87776  555532     222322111 1112334566778888888888899999999999999999988999999998


Q ss_pred             e
Q 022910          287 S  287 (290)
Q Consensus       287 s  287 (290)
                      -
T Consensus       262 g  262 (310)
T KOG4499|consen  262 G  262 (310)
T ss_pred             c
Confidence            4

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.02  E-value=0.0022  Score=50.40  Aligned_cols=209  Identities=16%  Similarity=0.188  Sum_probs=127.4

Q ss_pred             CEEEEEECCCCCcEEEEecCCCc-EEEEEccCCeeeeeeccccCC--EEEEEECCCCCEEEEEeCC-----CcEEEEcCC
Q 022910           66 EVYSVACSPTDATLVATGGGDDK-GFFWRINQGDWASEIQGHKDS--VSSLAFSMDGQLLASGGLD-----GLVQIWDPS  137 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~  137 (290)
                      .-..++|+|..+.-++.+..-|+ ..++|....+....+...++.  --.-.|+|+|.+|+..-.|     |.|-|||..
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            44578899977777887777775 578888887666555432222  1123589999999887543     789999987


Q ss_pred             CC-ceEEEEecCCCCEEEEEEcCCCCEEEEeeCC------------------CeEEEEECCcccEEEeee----cCCCCe
Q 022910          138 SG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------------------STVWMWNADRAAYLNMFS----GHGSSV  194 (290)
Q Consensus       138 ~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------------------g~i~i~d~~~~~~~~~~~----~~~~~i  194 (290)
                      .+ +.+-.+..|.-....+.|.++|+.++.+...                  -.+.+.|..++..+.+..    .+.-.|
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi  228 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI  228 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence            54 4566777787778899999999998886531                  123333433443332221    234467


Q ss_pred             EEEEEcCCCCEEEEEeCCCe-----EEEEcCCCCeeeEEEeCCC----CcccCeEEEEEcCCCCEE-EEEeCCCcEEEEE
Q 022910          195 TCGDFTPDGKTICTGSDDAT-----LRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLA-LSGSKDGSVHMVN  264 (290)
Q Consensus       195 ~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd  264 (290)
                      ..++..++|+.++.+-..|.     -.+=-...++.+..+...+    .....|-+++.+.+..++ +|+=..+...+||
T Consensus       229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d  308 (366)
T COG3490         229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD  308 (366)
T ss_pred             eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence            78888888776655433331     1111122333333333211    022346677777644444 4444455778999


Q ss_pred             cCCCcEEEEE
Q 022910          265 ITTGKVVSSL  274 (290)
Q Consensus       265 ~~~~~~~~~~  274 (290)
                      ..+|.++..-
T Consensus       309 a~tG~vv~~a  318 (366)
T COG3490         309 AATGAVVSEA  318 (366)
T ss_pred             cCCCcEEecc
Confidence            9999877643

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=98.01  E-value=0.011  Score=54.24  Aligned_cols=195  Identities=12%  Similarity=0.165  Sum_probs=121.7

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccccC--------CEEEEEECC----------------CCCEEEEEeCCCcEEEE
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHKD--------SVSSLAFSM----------------DGQLLASGGLDGLVQIW  134 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------~i~~~~~~~----------------~~~~l~~~~~dg~i~i~  134 (290)
                      .++.++.++.|.-.|..+++.+.++.....        ..+.+.+..                .+..++.++.|+.|.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            555677789999999999998877653221        012233321                23478888999999999


Q ss_pred             cCCCCceEEEEecCCCCE-------------EEEEEcC--CCCEEEEeeC----------CCeEEEEECCcccEEEeeec
Q 022910          135 DPSSGNLKCTLEGPGGGV-------------EWVSWHP--RGHIVLAGSE----------DSTVWMWNADRAAYLNMFSG  189 (290)
Q Consensus       135 d~~~~~~~~~~~~~~~~i-------------~~i~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~  189 (290)
                      |..+|+.+..+... +.+             ..+.-.|  .+..+++|+.          .|.|+-+|.++++.+-.+..
T Consensus       276 DA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~  354 (764)
T TIGR03074       276 DADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP  354 (764)
T ss_pred             ECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence            99999988766421 111             0111122  2345666643          68899999999988766542


Q ss_pred             C---------C--------CCe-EEEEEcCCCCEEEEEe------------------CCCeEEEEcCCCCeeeEEEeCCC
Q 022910          190 H---------G--------SSV-TCGDFTPDGKTICTGS------------------DDATLRVWNPKSGENIHVIRGHP  233 (290)
Q Consensus       190 ~---------~--------~~i-~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~~~  233 (290)
                      .         .        ..+ ..+++.|...+++.+.                  ..+.|.-.|+.+++....++..+
T Consensus       355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~  434 (764)
T TIGR03074       355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVH  434 (764)
T ss_pred             CCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccC
Confidence            1         0        011 2344555444444422                  13457777888998877776522


Q ss_pred             Ccc-------cCeEEEEEcC-CCC---EEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          234 YHT-------EGLTCLTISA-DST---LALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       234 ~~~-------~~v~~~~~~~-~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                       |.       ....-+.+.. +|+   .++.++.+|.++++|.++|+++...+
T Consensus       435 -hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       435 -HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             -CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence             11       1112222322 553   89999999999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.00  E-value=0.0026  Score=50.26  Aligned_cols=171  Identities=13%  Similarity=0.209  Sum_probs=114.1

Q ss_pred             ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCC-CCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc
Q 022910          104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA  182 (290)
Q Consensus       104 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  182 (290)
                      .+-...+.++.|+|+.+.|++......-.|+=...|+.+.++.... ...-.|.|...+.+.++--.++.++++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            4445569999999999998888888888888778888888776321 234557777777777777778888888776552


Q ss_pred             EEEe----------eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEe---CCC----CcccCeEEEEEc
Q 022910          183 YLNM----------FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR---GHP----YHTEGLTCLTIS  245 (290)
Q Consensus       183 ~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~----~~~~~v~~~~~~  245 (290)
                      .+..          ....+.....++|.|....|+.+-.-.-+.||............   .+.    ..-..+.++.|+
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            2111          11125677899999998889888888888887765332111111   100    012357788888


Q ss_pred             C-CCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          246 A-DSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       246 ~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      + .+.+|+-+..++.+.-.|. .|.++..+.
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~-~G~~~~~ls  271 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDL-SGEVIELLS  271 (316)
T ss_pred             CCCCcEEEEecCCceEEEEec-CCCeeeeEE
Confidence            7 5667777777777777775 455454443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.98  E-value=0.0057  Score=49.62  Aligned_cols=157  Identities=13%  Similarity=0.220  Sum_probs=85.2

Q ss_pred             eccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEEC-Ccc
Q 022910          103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA-DRA  181 (290)
Q Consensus       103 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~-~~~  181 (290)
                      ...-.+.+..+..+++|+++++++....+.-|+.-...-...-+.....|..|.|.|++.+.+++ ..|.|+.=+. ...
T Consensus       140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence            34455778889899999999988766666677754433333333345689999999998776655 7788888872 222


Q ss_pred             cEEEe----eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 022910          182 AYLNM----FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD  257 (290)
Q Consensus       182 ~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  257 (290)
                      ..-..    +....-.+..++|.+++...++|+ .|.| +.....|+.-+..+........++.+.|.+..+-++. +.+
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~  295 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQD  295 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--ST
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCC
Confidence            21111    112334578999998877666665 5544 4555667766665543334567888888765555554 568


Q ss_pred             CcEEEE
Q 022910          258 GSVHMV  263 (290)
Q Consensus       258 g~i~~w  263 (290)
                      |.|.-|
T Consensus       296 G~ll~~  301 (302)
T PF14870_consen  296 GVLLRY  301 (302)
T ss_dssp             TEEEEE
T ss_pred             cEEEEe
Confidence            877665

>smart00320 WD40 WD40 repeats

Probab=97.96  E-value=2.5e-05  Score=41.54  Aligned_cols=38  Identities=32%  Similarity=0.515  Sum_probs=33.6

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWR   93 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~   93 (290)
                      .+...+..|...|.++.|++ ...++++++.++.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            45778889999999999999 668899999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.93  E-value=1.8e-05  Score=59.64  Aligned_cols=140  Identities=19%  Similarity=0.218  Sum_probs=81.9

Q ss_pred             EEEEeCCCcEEEEcCCCCceEEEEe-cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE-EEeeecCCCCeEE-EE
Q 022910          122 LASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTC-GD  198 (290)
Q Consensus       122 l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~-~~  198 (290)
                      +...+.+|.|+-++++.-+....-. .+...   ...-.-+..+++|+.+|.|++|.....-. ...+......|.+ +.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            4445668888888776543321111 11111   11112356899999999999998763211 1111112223322 22


Q ss_pred             EcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcc-cCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCC
Q 022910          199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-EGLTCLTISADSTLALSG--SKDGSVHMVNITT  267 (290)
Q Consensus       199 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~~wd~~~  267 (290)
                      -..++.+..+++.+|.|+.|+..-++.+.....   |. .++..+.....+.+|+.+  +.|..++.|++..
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~---h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ---HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeecc---ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            223456788999999999999988877666655   33 344444445556666666  6777777777654

>smart00320 WD40 WD40 repeats

Probab=97.92  E-value=5.4e-05  Score=40.12  Aligned_cols=38  Identities=39%  Similarity=0.818  Sum_probs=33.3

Q ss_pred             cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910          182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (290)
Q Consensus       182 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  219 (290)
                      ++...+..|...|.++.|.+.+.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566677888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=8.2e-05  Score=67.67  Aligned_cols=104  Identities=18%  Similarity=0.281  Sum_probs=79.2

Q ss_pred             CCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccC
Q 022910          160 RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG  238 (290)
Q Consensus       160 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  238 (290)
                      .+..++.|+..|.+...|.... .+...-....++|++++|+.+|.+++.|-.+|.|.+||+..++..+.+..+......
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            5667899999999999988764 222222335689999999999999999999999999999998888888764434444


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          239 LTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       239 v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      +-.+.+..++..++++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            555556666777888887776  4554

>PHA03098 kelch-like protein; Provisional

Probab=97.82  E-value=0.0041  Score=55.39  Aligned_cols=186  Identities=12%  Similarity=0.203  Sum_probs=93.5

Q ss_pred             CCcEEEEecCCC------cEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCC-----CcEEEEcCCCCceE
Q 022910           76 DATLVATGGGDD------KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNLK  142 (290)
Q Consensus        76 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~  142 (290)
                      ++.+++.|+.++      .+..||..+.+....  +.........+.+  ++..++.|+.+     ..+..||..+++..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            456777776543      477888877665332  1111122222223  56677777754     35778888776543


Q ss_pred             EEEecCCCC-EEEEEEcCCCCEEEEeeCC------CeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeCC-
Q 022910          143 CTLEGPGGG-VEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDD-  212 (290)
Q Consensus       143 ~~~~~~~~~-i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-  212 (290)
                      ..-..+... -.+++ .-+++.++.|+..      ..+..||+.+.+-...  +....... ++.. .++.+++.|+.. 
T Consensus       372 ~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~  448 (534)
T PHA03098        372 EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGISY  448 (534)
T ss_pred             eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCccC
Confidence            221111111 11122 2256777777632      4588899877643322  11111111 2222 245566666543 


Q ss_pred             -------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 022910          213 -------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK  269 (290)
Q Consensus       213 -------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~  269 (290)
                             ..+.+||..+++= ..+...+........+.+  ++++++.|+.+     +.|.+||..+.+
T Consensus       449 ~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        449 IDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence                   2388899876532 222211111111222222  67777777754     478899887653

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.79  E-value=0.0078  Score=49.99  Aligned_cols=194  Identities=15%  Similarity=0.155  Sum_probs=94.5

Q ss_pred             EccCCeeeeeeccccCCEEEE-----EECCCCCEEEEEeC---CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 022910           93 RINQGDWASEIQGHKDSVSSL-----AFSMDGQLLASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV  164 (290)
Q Consensus        93 ~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  164 (290)
                      |..+|..+.++.........+     +|.++|++|+.++.   ...+++.|+.+++..+...+.........++|+.+.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            455666666665433333323     45678876666554   4567888999988776555433323346677888887


Q ss_pred             EEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEc--CCCCEEEEEe----------------------CCCeEEEEcC
Q 022910          165 LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT--PDGKTICTGS----------------------DDATLRVWNP  220 (290)
Q Consensus       165 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~----------------------~dg~i~i~d~  220 (290)
                      +-.-....|+-.|+++.+....+......+-...|.  .++..++-.-                      -...|.-.|+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            766666789999999988766666566666555564  3555543221                      1234667788


Q ss_pred             CCCeeeEEEeCCCCcccCeEEEEEcCCC-CEEEEEeC---CC-cEEEEEcC-CCcEEEEEccCC--CcEEEEEEecCC
Q 022910          221 KSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSK---DG-SVHMVNIT-TGKVVSSLVSHT--DSIECIGFSRSE  290 (290)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~---dg-~i~~wd~~-~~~~~~~~~~~~--~~v~~i~~s~d~  290 (290)
                      .+++....+.    ....+..+.|+|.. .+|+-|-.   +. .-|||-++ .+...+.+..+.  ..+..=-|.|||
T Consensus       176 ~tG~~~~v~~----~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG  249 (386)
T PF14583_consen  176 KTGERKVVFE----DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDG  249 (386)
T ss_dssp             TT--EEEEEE----ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTS
T ss_pred             CCCceeEEEe----cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCC
Confidence            8887755555    45678899999944 44444322   21 12445443 244444443332  234444556654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.78  E-value=0.012  Score=47.58  Aligned_cols=145  Identities=13%  Similarity=0.155  Sum_probs=91.1

Q ss_pred             CCCCEEEEEeCCCcEEEEcCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee--------
Q 022910          117 MDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF--------  187 (290)
Q Consensus       117 ~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------  187 (290)
                      ..++.|+.|+.+| |+++++.. ........  ..+|..+...|.-+.|++-+. +.++++++.........        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEcC-CccEEEEchhhcccccccccccccc
Confidence            3577899999998 99999833 33333322  233999999998777666654 99999998765433311        


Q ss_pred             ------ecCCCCeEEEE--EcCCCCEEEEEeCCCeEEEEcCCCC-----eeeEEEeCCCCcccCeEEEEEcCCCCEEEEE
Q 022910          188 ------SGHGSSVTCGD--FTPDGKTICTGSDDATLRVWNPKSG-----ENIHVIRGHPYHTEGLTCLTISADSTLALSG  254 (290)
Q Consensus       188 ------~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  254 (290)
                            ......+...+  -.+.+...++......|.+|.....     +..+.+.    ....+..++|.  ++.|+.|
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~----lp~~~~~i~~~--~~~i~v~  154 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS----LPDPPSSIAFL--GNKICVG  154 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE----cCCCcEEEEEe--CCEEEEE
Confidence                  11223344444  1123333333444558888877653     3334444    45788999998  5577777


Q ss_pred             eCCCcEEEEEcCCCcEEE
Q 022910          255 SKDGSVHMVNITTGKVVS  272 (290)
Q Consensus       255 ~~dg~i~~wd~~~~~~~~  272 (290)
                      ..+ ...+.|+.++....
T Consensus       155 ~~~-~f~~idl~~~~~~~  171 (275)
T PF00780_consen  155 TSK-GFYLIDLNTGSPSE  171 (275)
T ss_pred             eCC-ceEEEecCCCCceE
Confidence            655 47788998766543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.76  E-value=0.012  Score=46.31  Aligned_cols=185  Identities=17%  Similarity=0.180  Sum_probs=119.6

Q ss_pred             eeeeeccccC--CEEEEEECCCCCEEEEEeCCC--cEEEEcCCCCceEEEEecCCC-CEEEEEEcCCCCEEEEeeCCCeE
Q 022910           99 WASEIQGHKD--SVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDSTV  173 (290)
Q Consensus        99 ~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i  173 (290)
                      .+.+++ |..  -...+.|..++.++-+.+.-|  .|+.+|+.+++......-... ---.++.. +++.+...-.++..
T Consensus        35 vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~  112 (264)
T PF05096_consen   35 VVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred             EEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence            344444 433  345677867787777777655  799999999998766654332 22234433 34455556678999


Q ss_pred             EEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC--cccCeEEEEEcCCCCEE
Q 022910          174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY--HTEGLTCLTISADSTLA  251 (290)
Q Consensus       174 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l  251 (290)
                      .+||..+.+.+.++.-. +.=+.++.  ++..|+.+.....|+++|..+.+....+.....  .-..++-+-|- +|.+.
T Consensus       113 f~yd~~tl~~~~~~~y~-~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy  188 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFPYP-GEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY  188 (264)
T ss_dssp             EEEETTTTEEEEEEE-S-SS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred             EEEccccceEEEEEecC-CcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence            99999999988888643 45577774  577788888888999999998877766654211  12245666665 67777


Q ss_pred             EEEeCCCcEEEEEcCCCcEEEEEcc------------C---CCcEEEEEEecC
Q 022910          252 LSGSKDGSVHMVNITTGKVVSSLVS------------H---TDSIECIGFSRS  289 (290)
Q Consensus       252 ~~~~~dg~i~~wd~~~~~~~~~~~~------------~---~~~v~~i~~s~d  289 (290)
                      |-.-....|...|..+|+++..+..            +   ..-.++|||.|.
T Consensus       189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~  241 (264)
T PF05096_consen  189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE  241 (264)
T ss_dssp             EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred             EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence            7777778899999999999887631            1   245789999875

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.73  E-value=0.013  Score=46.07  Aligned_cols=182  Identities=13%  Similarity=0.134  Sum_probs=113.4

Q ss_pred             EEEEEECCCCCcEEEEecCCC--cEEEEEccCCeeeeeecccc-CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           67 VYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHK-DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      ...+.|.. ++.++-+.+.-|  .|+.+++.+++......-.. ----.+... +++.+...-.++...+||..+.+.+.
T Consensus        47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence            35677755 566776766656  68999999988766544211 111223332 33444444568999999999999988


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC--C---CCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 022910          144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--G---SSVTCGDFTPDGKTICTGSDDATLRVW  218 (290)
Q Consensus       144 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~i~~~~~~~~~~~l~~~~~dg~i~i~  218 (290)
                      ++... +.=+.++  .++..|+.+.....|+++|..+.+..+.+...  .   ..+.-+.|. +|...|=.-....|...
T Consensus       125 ~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  125 TFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            88754 3456666  36777888877889999999888777665432  2   245567776 56555555566788899


Q ss_pred             cCCCCeeeEEEeCCC------------CcccCeEEEEEcCCCC-EEEEE
Q 022910          219 NPKSGENIHVIRGHP------------YHTEGLTCLTISADST-LALSG  254 (290)
Q Consensus       219 d~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~-~l~~~  254 (290)
                      |..+|+....+....            ....-.+.+++.|... +++||
T Consensus       201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            999998877663211            0135689999998554 55555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.73  E-value=0.02  Score=47.71  Aligned_cols=218  Identities=12%  Similarity=0.115  Sum_probs=107.3

Q ss_pred             CCCCceeeeccCCcCEEEEE-----ECCCCCcEEEEecCCCc--EEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEE
Q 022910           52 QPDDSTHIFSGHSDEVYSVA-----CSPTDATLVATGGGDDK--GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS  124 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~-----~~~~~~~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  124 (290)
                      ..+..+..|..+...-..+-     |.+++.++|+++..+|.  +.+.|+.+++...--.+.........++|+++.++-
T Consensus        18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y   97 (386)
T PF14583_consen   18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY   97 (386)
T ss_dssp             TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred             CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence            34556666665555444443     44545567777766664  666677777655433322122224567788888776


Q ss_pred             EeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEc--CCCCEEEEee----------------------CCCeEEEEECCc
Q 022910          125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH--PRGHIVLAGS----------------------EDSTVWMWNADR  180 (290)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~----------------------~dg~i~i~d~~~  180 (290)
                      ......|+-.|+.+.+....+..+....-...|.  .++..++-.-                      -...|...|+.+
T Consensus        98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t  177 (386)
T PF14583_consen   98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT  177 (386)
T ss_dssp             EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred             EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence            6666789999999998777777666655555664  3455544321                      123566677887


Q ss_pred             ccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEcCCC-CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE
Q 022910          181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-----TLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSG  254 (290)
Q Consensus       181 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  254 (290)
                      ++....+. ....+.-+.|+|....+++-|..|     .-|||-+++ +.....+.... ....+..=-|.|+|..|.--
T Consensus       178 G~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~  255 (386)
T PF14583_consen  178 GERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYD  255 (386)
T ss_dssp             --EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEE
T ss_pred             CceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEE
Confidence            77544444 566788899999555555544333     125554432 23333443322 24456666799999866542


Q ss_pred             e-----CCCcEEEEEcCCCcEE
Q 022910          255 S-----KDGSVHMVNITTGKVV  271 (290)
Q Consensus       255 ~-----~dg~i~~wd~~~~~~~  271 (290)
                      +     .+..|.-+++.+++..
T Consensus       256 ~~~~~~~~~~i~~~d~~t~~~~  277 (386)
T PF14583_consen  256 SYTPGGQDFWIAGYDPDTGERR  277 (386)
T ss_dssp             EEETTT--EEEEEE-TTT--EE
T ss_pred             eecCCCCceEEEeeCCCCCCce
Confidence            2     2446777888877643

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.72  E-value=0.015  Score=46.10  Aligned_cols=191  Identities=14%  Similarity=0.185  Sum_probs=119.1

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc-ccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      .|-...|.++.|+|+...++++ ...+.-.++=...|+.+.++.- .-...-.+.+..++++.++--.++.+.++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav-~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEe-cCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3445569999999955555555 4556666777777888887652 1223356778878888888778899998887665


Q ss_pred             ceEEEE----------ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE---Eeeec-------CCCCeEEEEE
Q 022910          140 NLKCTL----------EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL---NMFSG-------HGSSVTCGDF  199 (290)
Q Consensus       140 ~~~~~~----------~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~-------~~~~i~~~~~  199 (290)
                      .....+          .......-.++|.|....|+.+=.-.-+.||.+......   .....       .-..|.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            322211          111445788999999888888887777777776543211   11111       1235678888


Q ss_pred             cC-CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC------cccCeEEEEEcCCCCEEEE
Q 022910          200 TP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPY------HTEGLTCLTISADSTLALS  253 (290)
Q Consensus       200 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~  253 (290)
                      .+ .+.+|+-+..++.|.-.|.. +..+..+.....      .....-.++..++|.+.++
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv  300 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV  300 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence            87 45666777778888888875 343443332111      1123445677666654443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.67  E-value=0.026  Score=47.59  Aligned_cols=214  Identities=14%  Similarity=0.123  Sum_probs=102.8

Q ss_pred             CCceeeec-cCC-cCEEEEEECC-----------CCCcEEEEecCCCcEEEEEccC----Ceeeeeecc---cc----CC
Q 022910           54 DDSTHIFS-GHS-DEVYSVACSP-----------TDATLVATGGGDDKGFFWRINQ----GDWASEIQG---HK----DS  109 (290)
Q Consensus        54 ~~~~~~~~-~h~-~~v~~~~~~~-----------~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~---~~----~~  109 (290)
                      .+.+..+. .+. +.....-|+.           ...++++-|-..+.|+|+|+.+    .++.+.+..   +.    ..
T Consensus        52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~  131 (461)
T PF05694_consen   52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR  131 (461)
T ss_dssp             TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred             ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence            34444442 232 4666666651           1334555566889999999984    344444432   11    22


Q ss_pred             EEEEEECCCCCEEEEEeC------CCcEEEEcCCCCceEEEEecCC---CCEEEEEEcCCCCEEEEeeC-----------
Q 022910          110 VSSLAFSMDGQLLASGGL------DGLVQIWDPSSGNLKCTLEGPG---GGVEWVSWHPRGHIVLAGSE-----------  169 (290)
Q Consensus       110 i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~-----------  169 (290)
                      -..+-.-|+|+.++++-.      -|-+.++|-++.+.........   ..-..+-|.|..+.++++..           
T Consensus       132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~  211 (461)
T PF05694_consen  132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFN  211 (461)
T ss_dssp             EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---
T ss_pred             CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCC
Confidence            334445578888887622      3568888888888777765432   23466788898888888653           


Q ss_pred             ---------CCeEEEEECCcccEEEeeecCCC--CeEEEEEcCC--CCE-EEEEeCCCeEEEEcC-CCCe----eeEEEe
Q 022910          170 ---------DSTVWMWNADRAAYLNMFSGHGS--SVTCGDFTPD--GKT-ICTGSDDATLRVWNP-KSGE----NIHVIR  230 (290)
Q Consensus       170 ---------dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~--~~~-l~~~~~dg~i~i~d~-~~~~----~~~~~~  230 (290)
                               ..++.+||+.+.+.++++.-...  .+..+.|..+  ..+ ++.+...++|..|-. ..+.    .+-.+.
T Consensus       212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip  291 (461)
T PF05694_consen  212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP  291 (461)
T ss_dssp             TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred             hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence                     35799999999999998875432  3456666553  333 333334555555533 3332    111221


Q ss_pred             CCC--------------CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 022910          231 GHP--------------YHTEGLTCLTISADSTLALSGSK-DGSVHMVNITT  267 (290)
Q Consensus       231 ~~~--------------~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~  267 (290)
                      ..+              ....-|+.+.+|.|.++|+.++. .|.|+.||+..
T Consensus       292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence            110              01345789999999999888776 89999999975

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02790 Kelch-like protein; Provisional

Probab=97.64  E-value=0.011  Score=51.85  Aligned_cols=184  Identities=13%  Similarity=0.094  Sum_probs=91.9

Q ss_pred             CCcEEEEecCCC-----cEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCC--CcEEEEcCCCCceEEEEe
Q 022910           76 DATLVATGGGDD-----KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD--GLVQIWDPSSGNLKCTLE  146 (290)
Q Consensus        76 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~  146 (290)
                      ++.++++|+.++     .+..||..+++....  +.........+.  -++...++|+.+  ..+..|+..+++....-.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            556777887643     467788777654432  221121222222  366677777653  357788876654332211


Q ss_pred             cCCCCEEEEEEcCCCCEEEEeeCCC---eEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC
Q 022910          147 GPGGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK  221 (290)
Q Consensus       147 ~~~~~i~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  221 (290)
                      -+..........-+++..+.|+.++   .+..||.++.+-...  +.........+.+  ++.+.+.|   |.+.+||..
T Consensus       349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~  423 (480)
T PHA02790        349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCES  423 (480)
T ss_pred             CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCC
Confidence            1111111111122677778877653   467888876643321  1111111122222  45555555   457789987


Q ss_pred             CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 022910          222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK  269 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~  269 (290)
                      +++ ...+...+........+.+  ++++.++||.+     ..|.+||..+.+
T Consensus       424 ~~~-W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        424 SNT-WTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CCc-EeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            643 2222222111222222232  67788888764     356677766543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.61  E-value=0.00021  Score=54.07  Aligned_cols=137  Identities=12%  Similarity=0.073  Sum_probs=81.1

Q ss_pred             ecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE-EEEecCCCCEEEEE-EcC
Q 022910           83 GGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK-CTLEGPGGGVEWVS-WHP  159 (290)
Q Consensus        83 ~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~i~-~~~  159 (290)
                      -+.+|.|+-+++...+....-. .+...   .....-+..+++|+.+|.|++|...-.... ..+......|-++. --.
T Consensus        36 ~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~  112 (238)
T KOG2444|consen   36 TSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGR  112 (238)
T ss_pred             ccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccccc
Confidence            3556777776665433222111 12211   112224567999999999999998732111 11111222333322 223


Q ss_pred             CCCEEEEeeCCCeEEEEECCcccEEEeeecCC-CCeEEEEEcCCCCEEEEE--eCCCeEEEEcCCC
Q 022910          160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTG--SDDATLRVWNPKS  222 (290)
Q Consensus       160 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~  222 (290)
                      ++.+..++..+|.|+.|++.-.+.+-....|. .++..+..+..+++++.+  +.+..++.|++..
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            45688899999999999999888777766666 455555555556666666  6677777777653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.61  E-value=0.008  Score=53.64  Aligned_cols=187  Identities=17%  Similarity=0.283  Sum_probs=103.9

Q ss_pred             CCcEEEEecCC------CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCCC-----cEEEEcCCCCceE
Q 022910           76 DATLVATGGGD------DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLK  142 (290)
Q Consensus        76 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~  142 (290)
                      ++.++++|+.+      ..+..||..+++....  +...........+  +|...|+|+.+|     ++-.||..+.+..
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence            45788899988      3577888877765542  2222222222222  788888898886     4677887776543


Q ss_pred             EEEecCCCCEEEEEEcCCCCEEEEeeCCC------eEEEEECCcccEEE--eeecCCCCeEEEEEcCCCCEEEEEeCCC-
Q 022910          143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDS------TVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDDA-  213 (290)
Q Consensus       143 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg-  213 (290)
                      ..-.-....-..-...-++.+.++|+.++      .+..||..+.+...  .+...........+  ++.+.++|+.++ 
T Consensus       410 ~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~  487 (571)
T KOG4441|consen  410 PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGT  487 (571)
T ss_pred             ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCC
Confidence            22211111111111122678888888554      46788877765332  22222222222222  567778888776 


Q ss_pred             ----eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCc
Q 022910          214 ----TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGK  269 (290)
Q Consensus       214 ----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~  269 (290)
                          +|..||..+.+=. .+.......+.+..+.+  ++...++|+.||     +|..||..+.+
T Consensus       488 ~~~~~VE~ydp~~~~W~-~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  488 SALSSVERYDPETNQWT-MVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             CccceEEEEcCCCCcee-EcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence                3778998875532 22222212233333333  577888888876     57778766543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.60  E-value=0.0015  Score=60.23  Aligned_cols=145  Identities=14%  Similarity=-0.005  Sum_probs=93.4

Q ss_pred             CCEEEEEECCCCCEEEEE--eCCCcEEEEcCCCCceEE-----------EEecCCCCEEEEEEcCCCC-EEEEeeCCCeE
Q 022910          108 DSVSSLAFSMDGQLLASG--GLDGLVQIWDPSSGNLKC-----------TLEGPGGGVEWVSWHPRGH-IVLAGSEDSTV  173 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~-----------~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i  173 (290)
                      -+|..+...+++...++.  +.+-.|..||+++...-.           +.........++.|.|.-. ..++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            356666677787654444  334478899987542211           1111223456788888543 45667778889


Q ss_pred             EEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCc-ccCeEEEEEcCCCCEEE
Q 022910          174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH-TEGLTCLTISADSTLAL  252 (290)
Q Consensus       174 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~  252 (290)
                      ++..+........--......++++|+|.|+.+++|...|++.-|... ++....+...+.. ...|.+++|-....+|+
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            888775443222212345678999999999999999999999999764 4443444444333 36799999987666665


Q ss_pred             E
Q 022910          253 S  253 (290)
Q Consensus       253 ~  253 (290)
                      +
T Consensus       260 v  260 (1405)
T KOG3630|consen  260 V  260 (1405)
T ss_pred             E
Confidence            4

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.58  E-value=0.025  Score=45.03  Aligned_cols=148  Identities=21%  Similarity=0.195  Sum_probs=89.8

Q ss_pred             CEEEEEECCCCCEEEEEe---CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEE-CCcccEE
Q 022910          109 SVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN-ADRAAYL  184 (290)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~  184 (290)
                      .+...+++++++.++...   ....|+++..  +....... ....+....|++++...+....+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999999777665   3345555543  33332322 223688889999988777777666666663 3333221


Q ss_pred             -Eeeec--CCCCeEEEEEcCCCCEEEEEe---CCCeEEEEcCC---CCee---eEEEeCCCCcccCeEEEEEcCCCCEEE
Q 022910          185 -NMFSG--HGSSVTCGDFTPDGKTICTGS---DDATLRVWNPK---SGEN---IHVIRGHPYHTEGLTCLTISADSTLAL  252 (290)
Q Consensus       185 -~~~~~--~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (290)
                       .....  ....|..+.++|+|..++...   .++.|.+--+.   .+..   ...+.........++.+.|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             11211  112899999999999887655   35677765432   2201   111111111346789999999988877


Q ss_pred             EEeCCCc
Q 022910          253 SGSKDGS  259 (290)
Q Consensus       253 ~~~~dg~  259 (290)
                      .+...+.
T Consensus       182 ~~~~~~~  188 (253)
T PF10647_consen  182 LGRSAGG  188 (253)
T ss_pred             EeCCCCC
Confidence            7765443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.55  E-value=0.0098  Score=53.10  Aligned_cols=186  Identities=18%  Similarity=0.278  Sum_probs=102.9

Q ss_pred             CCcEEEEecCCC------cEEEEEccCCeeeeeecc-ccCCEEEEEECCCCCEEEEEeCC------CcEEEEcCCCCceE
Q 022910           76 DATLVATGGGDD------KGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLK  142 (290)
Q Consensus        76 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~  142 (290)
                      .+.+++.|+..+      .+..||..++.......- ....-.++++. ++...++|+.+      .++..||..+++..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            456777887763      688888888754433221 22223334443 56778888888      35778888877644


Q ss_pred             EEEe--cCCCCEEEEEEcCCCCEEEEeeCCCe-----EEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910          143 CTLE--GPGGGVEWVSWHPRGHIVLAGSEDST-----VWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDDA  213 (290)
Q Consensus       143 ~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg  213 (290)
                      ..-.  ..........+  +|.+.++|+.+|.     +-.||..+.+....  +...........+  +|.+.++|+.++
T Consensus       363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~  438 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDG  438 (571)
T ss_pred             ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCC
Confidence            3211  11111111111  6888999998874     77788776543222  2211122222222  577777887554


Q ss_pred             ------eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCc
Q 022910          214 ------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGK  269 (290)
Q Consensus       214 ------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~  269 (290)
                            .+..||..++.= ..+..............+  ++.+++.||.++     +|..||..+.+
T Consensus       439 ~~~~l~sve~YDP~t~~W-~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTW-TLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             CccccceEEEEcCCCCce-eecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCc
Confidence                  578889877542 111111111122222222  677888888776     37778877644

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.51  E-value=0.013  Score=50.85  Aligned_cols=149  Identities=13%  Similarity=0.088  Sum_probs=89.4

Q ss_pred             cCCEEEEEECCCCCEEEEEe---CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCC----CCEEEEeeCCCeEEEEECC
Q 022910          107 KDSVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR----GHIVLAGSEDSTVWMWNAD  179 (290)
Q Consensus       107 ~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~----~~~l~~~~~dg~i~i~d~~  179 (290)
                      -.++..++|. ||+.++...   ..|.+++=|   .+.+..|    ..|..+.|.|-    ...|++.-....|.+|-+.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            3578999997 666544432   234333322   1223333    34888999984    3356666667899999876


Q ss_pred             c-----ccEEEeeec-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC
Q 022910          180 R-----AAYLNMFSG-----HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST  249 (290)
Q Consensus       180 ~-----~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  249 (290)
                      .     .+.+.....     ..--...+.|+|....|++-.....-.+++++..........  ...+-|.|.+|.+||+
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi--~~~G~IhCACWT~DG~  168 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI--KTSGLIHCACWTKDGQ  168 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec--cCCceEEEEEecCcCC
Confidence            2     222221111     112235677999988887765554444666654433222221  1567899999999998


Q ss_pred             EEEEEeCC-CcEEEEEc
Q 022910          250 LALSGSKD-GSVHMVNI  265 (290)
Q Consensus       250 ~l~~~~~d-g~i~~wd~  265 (290)
                      .|+++-.. =.-++||-
T Consensus       169 RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  169 RLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             EEEEEeCCeEEEEEecC
Confidence            87776433 35688884

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.50  E-value=0.048  Score=46.33  Aligned_cols=86  Identities=9%  Similarity=0.168  Sum_probs=61.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC-----------------CC-EEE
Q 022910          191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-----------------ST-LAL  252 (290)
Q Consensus       191 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~-~l~  252 (290)
                      ...+.+|+.+|.+++.++...-|.|.++|+.++..++.+++..  ...+..+.....                 .. +++
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            3457889999999999998888999999999998888887753  222221111111                 11 233


Q ss_pred             EEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910          253 SGSKDGSVHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       253 ~~~~dg~i~~wd~~~~~~~~~~~~~~  278 (290)
                      -+-.-|.|-||.+++|..+..+....
T Consensus       385 yaprRg~lEvW~~~~g~Rv~a~~v~k  410 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVAAFNVGK  410 (415)
T ss_pred             EeccCCeEEEEecCCCCEEEEEEeCC
Confidence            35567899999999999998887533

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.47  E-value=0.058  Score=46.44  Aligned_cols=154  Identities=16%  Similarity=0.253  Sum_probs=89.1

Q ss_pred             EEEEEECCCCCEEEEE-eCCC----cEEEEcCCCCceEEEE-ecCCCCEEEEEEcCCCCEEEEeeCC-----------Ce
Q 022910          110 VSSLAFSMDGQLLASG-GLDG----LVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSED-----------ST  172 (290)
Q Consensus       110 i~~~~~~~~~~~l~~~-~~dg----~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d-----------g~  172 (290)
                      +....++|+++++|.+ +..|    .|+++|+.+++.+... ....  ...+.|.++++.|+....+           ..
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            4467889999988765 3344    5999999999776532 2221  2339999998877665432           24


Q ss_pred             EEEEECCcccE--EEeeecCCC--CeEEEEEcCCCCEEEEEeC---C-CeEEEEcCCCC----eeeEEEeCCCCcccCe-
Q 022910          173 VWMWNADRAAY--LNMFSGHGS--SVTCGDFTPDGKTICTGSD---D-ATLRVWNPKSG----ENIHVIRGHPYHTEGL-  239 (290)
Q Consensus       173 i~i~d~~~~~~--~~~~~~~~~--~i~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~----~~~~~~~~~~~~~~~v-  239 (290)
                      |+.|.+.+...  ...+.....  ....+..++++++|+..+.   + ..+++.++..+    .....+..   ....+ 
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~---~~~~~~  280 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP---REDGVE  280 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE---SSSS-E
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC---CCCceE
Confidence            88888876642  233333222  2567889999999875433   2 35888888774    23333332   22223 


Q ss_pred             EEEEEcCCCCEEEEEeC---CCcEEEEEcCCCc
Q 022910          240 TCLTISADSTLALSGSK---DGSVHMVNITTGK  269 (290)
Q Consensus       240 ~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~  269 (290)
                      ..+... .+.+++....   .+.|...++....
T Consensus       281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             EEEEcc-CCEEEEeeCCCCCCcEEEEecccccc
Confidence            333333 4444444322   3567777776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.46  E-value=0.038  Score=44.19  Aligned_cols=220  Identities=14%  Similarity=0.219  Sum_probs=126.5

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEcc-------CCeeeeeecc-----ccCCEEEEEECCCCC------------E
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRIN-------QGDWASEIQG-----HKDSVSSLAFSMDGQ------------L  121 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-------~~~~~~~~~~-----~~~~i~~~~~~~~~~------------~  121 (290)
                      .-+.|+++| .+.+.++....+...+|+..       ...++..+..     .....+.+.|+....            .
T Consensus        24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            347899999 66677777777899999986       1223333331     123567777764322            3


Q ss_pred             EEEEeCCCcEEEEcCCCCce-----EEEEe-cCCC-CEEEEEEcC--CCCEEEEee-CCCeEEEEECCcccEE--Eeeec
Q 022910          122 LASGGLDGLVQIWDPSSGNL-----KCTLE-GPGG-GVEWVSWHP--RGHIVLAGS-EDSTVWMWNADRAAYL--NMFSG  189 (290)
Q Consensus       122 l~~~~~dg~i~i~d~~~~~~-----~~~~~-~~~~-~i~~i~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~  189 (290)
                      ++.++.+|+|.-|...-+..     ...+. ...+ -...+++..  .+.+|+.+. ..++|.+||-.=.+..  ..+..
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D  182 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID  182 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence            67788999999998532222     12222 1112 233455543  345555543 5788998875422211  00110


Q ss_pred             C-------CCCe---------EEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC------C
Q 022910          190 H-------GSSV---------TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA------D  247 (290)
Q Consensus       190 ~-------~~~i---------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~------~  247 (290)
                      .       .-.|         +-..-.++...=+.|..-|.|-+||+. ++.++.+.... .-...+.|+..|      .
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g-~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSG-RLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCC-cccCCceeeeChhhhCCCC
Confidence            0       0001         111111222222333445789999985 66667664322 344566777765      4


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEEccCCC------cEEEEEEec
Q 022910          248 STLALSGSKDGSVHMVNITTGKVVSSLVSHTD------SIECIGFSR  288 (290)
Q Consensus       248 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~------~v~~i~~s~  288 (290)
                      +.+|+---.||+|..||..+++.+..+....+      .++.|+|..
T Consensus       261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            66777666799999999999998888875443      456777654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.44  E-value=0.016  Score=50.34  Aligned_cols=148  Identities=14%  Similarity=0.181  Sum_probs=91.5

Q ss_pred             cCEEEEEECCCCCcEEEEec--CCCcEEEEEccCCeeeeeeccccCCEEEEEECCCC----CEEEEEeCCCcEEEEcCC-
Q 022910           65 DEVYSVACSPTDATLVATGG--GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG----QLLASGGLDGLVQIWDPS-  137 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~-  137 (290)
                      -+|..++|.- +...+.|.-  .+|.+++=|   .+.+    +.-..|..+.|.|-+    ..+++......|.||.+- 
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            4889999985 666666642  233333222   1222    234568999999843    245555668899999874 


Q ss_pred             ----CCceEEEEecCCC-----CEEEEEEcCCCCEEEEeeCCCeEEEEECCcc--cEEEeeecCCCCeEEEEEcCCCCEE
Q 022910          138 ----SGNLKCTLEGPGG-----GVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKTI  206 (290)
Q Consensus       138 ----~~~~~~~~~~~~~-----~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l  206 (290)
                          +++.+.....+-+     --..+.|||....|++-.....-.+++++..  +....+ ...+.|.|.+|.++|+.|
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEE
Confidence                3343332222111     1245789999988888776655556666543  222333 356789999999999888


Q ss_pred             EEEe-CCCeEEEEcCC
Q 022910          207 CTGS-DDATLRVWNPK  221 (290)
Q Consensus       207 ~~~~-~dg~i~i~d~~  221 (290)
                      +++- ..=.-++||-.
T Consensus       171 VVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEeCCeEEEEEecCc
Confidence            7653 33456788754

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=97.43  E-value=0.006  Score=51.88  Aligned_cols=141  Identities=21%  Similarity=0.217  Sum_probs=89.4

Q ss_pred             CCcEEE-EecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCC--------CEEEEEeCCCcEEEEcCCC-CceEEEE
Q 022910           76 DATLVA-TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG--------QLLASGGLDGLVQIWDPSS-GNLKCTL  145 (290)
Q Consensus        76 ~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~-~~~~~~~  145 (290)
                      +..+|+ .|+....++-.|+..|+.+.....|...  -+.|.|..        +.|+-.| +..|.-.|.+- +..+...
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeee
Confidence            334443 4555667777888889988888877664  56777753        2344444 44455555542 3222222


Q ss_pred             ecCCCCEEEEEEc----CCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC
Q 022910          146 EGPGGGVEWVSWH----PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK  221 (290)
Q Consensus       146 ~~~~~~i~~i~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  221 (290)
                      .. ....+.-.|+    ....++|+++..|.|++||--..+....+.+.+..|..+..+.+|+++++.|.. .|.+-|++
T Consensus       555 es-KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         555 ES-KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             ee-hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            11 1112222222    245599999999999999965555555667788899999999999998887754 56666654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.35  E-value=0.042  Score=42.21  Aligned_cols=143  Identities=11%  Similarity=0.111  Sum_probs=87.7

Q ss_pred             cCCEEEEEECCCCCEEEEEeC---------CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEE-eeCCCeEEEE
Q 022910          107 KDSVSSLAFSMDGQLLASGGL---------DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMW  176 (290)
Q Consensus       107 ~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~  176 (290)
                      ..+...-..+|+|++++-.-.         .|.++.|-... + +..+...-+--+.++|+.+.+.+.. -+.+-.|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-Q-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-C-ceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            445667778999998443222         24455554321 1 2222222333466889877775554 4556678777


Q ss_pred             E--CCcccE-----EEeeec---C-CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEc
Q 022910          177 N--ADRAAY-----LNMFSG---H-GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS  245 (290)
Q Consensus       177 d--~~~~~~-----~~~~~~---~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  245 (290)
                      |  ..++..     +..++.   . .--.-.++....|++.+++-..|+|..+|+.+|+.+..+..   ....+++++|-
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFg  262 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFG  262 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEec
Confidence            7  555532     222221   1 11123455566889999999999999999999999998886   56789999996


Q ss_pred             C-CCCEEEEE
Q 022910          246 A-DSTLALSG  254 (290)
Q Consensus       246 ~-~~~~l~~~  254 (290)
                      - +-..|++.
T Consensus       263 Gkn~d~~yvT  272 (310)
T KOG4499|consen  263 GKNLDILYVT  272 (310)
T ss_pred             CCCccEEEEE
Confidence            3 33344443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.35  E-value=0.073  Score=44.96  Aligned_cols=186  Identities=12%  Similarity=0.108  Sum_probs=88.3

Q ss_pred             EEECCCCCcEEEEe--c----CCCcEEEEEccCCeeeeeeccc---cCCEEEEEECCCCCEEEEEeC-------------
Q 022910           70 VACSPTDATLVATG--G----GDDKGFFWRINQGDWASEIQGH---KDSVSSLAFSMDGQLLASGGL-------------  127 (290)
Q Consensus        70 ~~~~~~~~~~l~~~--~----~dg~i~iw~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-------------  127 (290)
                      +...| ++.+++++  .    .-|-+.++|-++.+........   ..--+.+-|.|..+.+++...             
T Consensus       135 ~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~  213 (461)
T PF05694_consen  135 VHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE  213 (461)
T ss_dssp             EEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred             eeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence            33445 56566654  2    2345778887776666655432   223466777888888888643             


Q ss_pred             -------CCcEEEEcCCCCceEEEEecCCC--CEEEEEEcC--CCCEEEEee-CCCeEEEEEC-Cccc----EEEeeec-
Q 022910          128 -------DGLVQIWDPSSGNLKCTLEGPGG--GVEWVSWHP--RGHIVLAGS-EDSTVWMWNA-DRAA----YLNMFSG-  189 (290)
Q Consensus       128 -------dg~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~--~~~~l~~~~-~dg~i~i~d~-~~~~----~~~~~~~-  189 (290)
                             ..+|.+||+.+.+.++++.....  ....+.|..  ...+=++++ -.++|..|-- ..++    .+..+.. 
T Consensus       214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~  293 (461)
T PF05694_consen  214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK  293 (461)
T ss_dssp             THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred             HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence                   36899999999999999875432  345666654  444433333 3445555433 3332    1111111 


Q ss_pred             ----------------CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEcCCCCeeeEEE---eCC-C------------Ccc
Q 022910          190 ----------------HGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVI---RGH-P------------YHT  236 (290)
Q Consensus       190 ----------------~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~---~~~-~------------~~~  236 (290)
                                      ...-|+.|..|.+.++|+.++ ..|.|+.||+......+..   ..- .            ...
T Consensus       294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~  373 (461)
T PF05694_consen  294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR  373 (461)
T ss_dssp             E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred             ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence                            134579999999999997655 5899999999765433222   100 0            012


Q ss_pred             cCeEEEEEcCCCCEEEEEeC
Q 022910          237 EGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       237 ~~v~~~~~~~~~~~l~~~~~  256 (290)
                      +...-+..|.||+.|+..++
T Consensus       374 GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  374 GGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             S----EEE-TTSSEEEEE--
T ss_pred             CCCCeEEEccCCeEEEEEee
Confidence            33467888899998887653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.35  E-value=0.00087  Score=37.71  Aligned_cols=36  Identities=17%  Similarity=0.359  Sum_probs=31.2

Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 022910          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV  271 (290)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  271 (290)
                      ....|..++|+|...+||.|+.+|.|.+|.+ +++.+
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            4567999999999999999999999999998 55543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.0042  Score=57.49  Aligned_cols=132  Identities=11%  Similarity=0.033  Sum_probs=85.4

Q ss_pred             CEEEEEEcCCCCEEEEe--eCCCeEEEEECCcccEEE-----------eeecCCCCeEEEEEcCCC-CEEEEEeCCCeEE
Q 022910          151 GVEWVSWHPRGHIVLAG--SEDSTVWMWNADRAAYLN-----------MFSGHGSSVTCGDFTPDG-KTICTGSDDATLR  216 (290)
Q Consensus       151 ~i~~i~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~-----------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~  216 (290)
                      +|..+...+++...++.  +.+-.|+.||+++.....           ..........++.|.|.- ...+++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45556666676654443  334479999998643211           111123345678888843 3456777899999


Q ss_pred             EEcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC----CCcEEEEEEe
Q 022910          217 VWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH----TDSIECIGFS  287 (290)
Q Consensus       217 i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~v~~i~~s  287 (290)
                      +.-+..... ...+.    .....++++|+|.|+.++.|-..|++.-|-. +.+....+...    ...|.+|+|-
T Consensus       182 V~~~~~~~~~v~s~p----~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP----VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             hhhhhhhhhhhcccC----cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEe
Confidence            987653322 12222    4567899999999999999999999998874 45544444432    3578888884

>PRK13684 Ycf48-like protein; Provisional

Probab=97.28  E-value=0.08  Score=44.09  Aligned_cols=153  Identities=10%  Similarity=0.032  Sum_probs=87.7

Q ss_pred             cCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE-EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE
Q 022910          107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN  185 (290)
Q Consensus       107 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  185 (290)
                      ...+..+.+.|++.+++++. .|.+..-.-..++.-. ........++.+.+.++++.++++. .|.+++=....+..-.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccc
Confidence            45688999999887766655 4655432112222222 2223345789999999988777654 5766543333333222


Q ss_pred             eeec----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910          186 MFSG----HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH  261 (290)
Q Consensus       186 ~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  261 (290)
                      ....    ....+..+.+.|++..+++ +.+|.|. .....++...............+.+.|..+++.++ .+..|.|.
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il  326 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLL  326 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEE
Confidence            1111    2235788899987775554 4567654 34444554444432111234677788876666655 45678887


Q ss_pred             EEE
Q 022910          262 MVN  264 (290)
Q Consensus       262 ~wd  264 (290)
                      .|+
T Consensus       327 ~~~  329 (334)
T PRK13684        327 RYV  329 (334)
T ss_pred             Eec
Confidence            765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.25  E-value=0.0016  Score=36.64  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee
Q 022910          190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN  225 (290)
Q Consensus       190 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  225 (290)
                      ....|.+++|+|...+||.++.+|.|.+|.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3457999999999999999999999999998 5554

>PHA02713 hypothetical protein; Provisional

Probab=97.23  E-value=0.0067  Score=54.15  Aligned_cols=145  Identities=13%  Similarity=0.136  Sum_probs=78.5

Q ss_pred             CCcEEEEecCCC-----cEEEEEccCCeeee--eeccccCCEEEEEECCCCCEEEEEeCC--------------------
Q 022910           76 DATLVATGGGDD-----KGFFWRINQGDWAS--EIQGHKDSVSSLAFSMDGQLLASGGLD--------------------  128 (290)
Q Consensus        76 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------------  128 (290)
                      ++.+.+.|+.++     .+..||..+.+...  .+.........+.+  ++...+.|+.+                    
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence            456677777654     37888887765443  22211122222223  67777777654                    


Q ss_pred             ---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC------CeEEEEECCc-ccE--EEeeecCCCCeEE
Q 022910          129 ---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------STVWMWNADR-AAY--LNMFSGHGSSVTC  196 (290)
Q Consensus       129 ---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~--~~~~~~~~~~i~~  196 (290)
                         ..+..||..+.+....-.-.......-...-++++.++|+.+      ..+..||..+ .+-  +..+.........
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~  508 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT  508 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence               247778887765432211111111111112256777777654      2467899887 443  3333333333333


Q ss_pred             EEEcCCCCEEEEEeCCC--eEEEEcCCCCe
Q 022910          197 GDFTPDGKTICTGSDDA--TLRVWNPKSGE  224 (290)
Q Consensus       197 ~~~~~~~~~l~~~~~dg--~i~i~d~~~~~  224 (290)
                      +.+  ++++.++|+.+|  .+..||..+.+
T Consensus       509 ~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        509 ILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EEE--CCEEEEEeeecceeehhhcCccccc
Confidence            333  678888998888  67777776654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.17  E-value=0.077  Score=44.86  Aligned_cols=144  Identities=16%  Similarity=0.237  Sum_probs=81.2

Q ss_pred             CCEEEEEECCCCCEEEEEe-----------CCC-cEEEEcCCC--Cc--eEEEEecCCCCEEEEEEcCCCCEEEEeeCCC
Q 022910          108 DSVSSLAFSMDGQLLASGG-----------LDG-LVQIWDPSS--GN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS  171 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg  171 (290)
                      .....|+|.++|+.+++-.           ..+ .|.+++-..  ++  ....+.........+++.+++ + +++....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-l-yV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-V-YVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-E-EEeCCCe
Confidence            3456789999998776643           223 677776432  22  223444334456889999888 4 4444433


Q ss_pred             eEEEEECCcc-----c---EEEeeecC----CCCeEEEEEcCCCCEEEEEeC-------------------CCeEEEEcC
Q 022910          172 TVWMWNADRA-----A---YLNMFSGH----GSSVTCGDFTPDGKTICTGSD-------------------DATLRVWNP  220 (290)
Q Consensus       172 ~i~i~d~~~~-----~---~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~-------------------dg~i~i~d~  220 (290)
                      ..++.+....     +   .+..+...    ......++|.|+|.+.++-+.                   .|.|..++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3334354321     1   11222221    234678999999987665442                   145666666


Q ss_pred             CCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 022910          221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD  257 (290)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  257 (290)
                      .+++. ..+..   .-.....++|+|+|.++++-..+
T Consensus       172 dg~~~-e~~a~---G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       172 DGGKL-RVVAH---GFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCCeE-EEEec---CcCCCccceECCCCCEEEEccCC
Confidence            55443 33322   23446789999999888765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.10  E-value=0.098  Score=41.49  Aligned_cols=147  Identities=18%  Similarity=0.255  Sum_probs=96.4

Q ss_pred             CEEEEEECCCCC-EEEEEeCCCc-EEEEcCCCCceEEEEecCCCC--EEEEEEcCCCCEEEEeeC-----CCeEEEEECC
Q 022910          109 SVSSLAFSMDGQ-LLASGGLDGL-VQIWDPSSGNLKCTLEGPGGG--VEWVSWHPRGHIVLAGSE-----DSTVWMWNAD  179 (290)
Q Consensus       109 ~i~~~~~~~~~~-~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~  179 (290)
                      ....|.|+|... -++.+-.-|+ ..++|....+...++....+.  .-.=.|||+|.+|+..-+     -|.|-+||.+
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            445678888654 4555555554 568898888776666543321  222468999999988654     3789999998


Q ss_pred             cc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCC------------------CeEEEEcCCCCeeeEEEeCC-CCcccCe
Q 022910          180 RA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDD------------------ATLRVWNPKSGENIHVIRGH-PYHTEGL  239 (290)
Q Consensus       180 ~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------g~i~i~d~~~~~~~~~~~~~-~~~~~~v  239 (290)
                      .+ +.+..+..|.-....+.|.++|+.++.+...                  -.+.+.|..+++.+.+..-. ..+.-.+
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi  228 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI  228 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence            54 4566778888888899999999999876420                  12444555555554332211 1244567


Q ss_pred             EEEEEcCCCCEEEEEe
Q 022910          240 TCLTISADSTLALSGS  255 (290)
Q Consensus       240 ~~~~~~~~~~~l~~~~  255 (290)
                      ..+...++|..++.+-
T Consensus       229 RHld~g~dgtvwfgcQ  244 (366)
T COG3490         229 RHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             eeeeeCCCCcEEEEEE
Confidence            8888888887766553

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.09  E-value=0.13  Score=43.53  Aligned_cols=138  Identities=16%  Similarity=0.144  Sum_probs=76.9

Q ss_pred             CCEEEEEEcCCCCEEEEee-----------CCC-eEEEEECCc--cc--EEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910          150 GGVEWVSWHPRGHIVLAGS-----------EDS-TVWMWNADR--AA--YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (290)
Q Consensus       150 ~~i~~i~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  213 (290)
                      .....|+|.++|+++++-.           ..+ .|.+++-..  ++  ....+...-.....|++.+++  |++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            3467789999998777643           223 677776532  22  223343333456889999888  44444444


Q ss_pred             eEEEEcCCCC-----eeeEEEeCCCC----cccCeEEEEEcCCCCEEEEEeCC-------------------CcEEEEEc
Q 022910          214 TLRVWNPKSG-----ENIHVIRGHPY----HTEGLTCLTISADSTLALSGSKD-------------------GSVHMVNI  265 (290)
Q Consensus       214 ~i~i~d~~~~-----~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~~wd~  265 (290)
                      ..++.|....     +....+.....    +......++|.|+|.+.++-+..                   |.|..++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3334454321     22222232221    13447789999999877655521                   45666666


Q ss_pred             CCCcEEEEEccCCCcEEEEEEecCC
Q 022910          266 TTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       266 ~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .+++. ..+...-.....++|+|+|
T Consensus       172 dg~~~-e~~a~G~rnp~Gl~~d~~G  195 (367)
T TIGR02604       172 DGGKL-RVVAHGFQNPYGHSVDSWG  195 (367)
T ss_pred             CCCeE-EEEecCcCCCccceECCCC
Confidence            54443 2232222345688888765

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.07  E-value=0.2  Score=46.30  Aligned_cols=151  Identities=11%  Similarity=0.085  Sum_probs=98.8

Q ss_pred             CEEEEEECCCCCcEEEEec----------CCCcEEEEEccCCeeeeeecc--ccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           66 EVYSVACSPTDATLVATGG----------GDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      .|.++.|..+...++++|.          ..|.|.+|.+...+.+.....  -.+.+.++... +|+++|.-  ...|++
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrL  852 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRL  852 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEE
Confidence            3455567775466777764          357888888877333333222  23445554332 66666655  468999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc--EEEee-ecCCCCeEEEEEcCCCCEEEEEe
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMF-SGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~-~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      |++.+.+.++.-..+..++..+...-.+..+++|..-+.+.+.-.+..+  ....- ..+..+.+++.+-.+ ..++.+.
T Consensus       853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~-d~ylgae  931 (1096)
T KOG1897|consen  853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDD-DTYLGAE  931 (1096)
T ss_pred             EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecC-ceEEeec
Confidence            9999987776666677889999999899999999988887776555433  33222 235677788777644 4455556


Q ss_pred             CCCeEEEEcC
Q 022910          211 DDATLRVWNP  220 (290)
Q Consensus       211 ~dg~i~i~d~  220 (290)
                      .+|.+.+...
T Consensus       932 ~~gNlf~v~~  941 (1096)
T KOG1897|consen  932 NSGNLFTVRK  941 (1096)
T ss_pred             ccccEEEEEe
Confidence            6777776543

>PRK10115 protease 2; Provisional

Probab=97.07  E-value=0.24  Score=45.59  Aligned_cols=194  Identities=14%  Similarity=0.076  Sum_probs=101.3

Q ss_pred             cCEEEEEECCCCCcEEEE-ecCCC----cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC------CcEEE
Q 022910           65 DEVYSVACSPTDATLVAT-GGGDD----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD------GLVQI  133 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~-~~~dg----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i  133 (290)
                      -.+..+.|+| ++.+|+. ...+|    .|++.++.++..+...-....  ..++|.++++.|+....+      ..|+.
T Consensus       127 ~~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            3567789999 5555544 33333    588899987764322211211  459999999866665432      36888


Q ss_pred             EcCCCC--ceEEEEecCCCCEE-EEEEcCCCCEEEEeeC---CCeEEEEECC--cccEEEeeecCCCCeEEEEEcCCCCE
Q 022910          134 WDPSSG--NLKCTLEGPGGGVE-WVSWHPRGHIVLAGSE---DSTVWMWNAD--RAAYLNMFSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       134 ~d~~~~--~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~  205 (290)
                      +++.++  +-...+........ .+..+.++++++..+.   ++.+.+|+..  .+.....+.........+. +.. ..
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~  281 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HR  281 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CE
Confidence            888887  44445554333333 2333447776665443   3568888843  3332222222222222222 223 34


Q ss_pred             EEEEeC----CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          206 ICTGSD----DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       206 l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      |+..+.    ...|...++........+.... ....+..+.+. .+.++++...+|.-+++-+
T Consensus       282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPR-ENIMLEGFTLF-TDWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             EEEEEcCCCCCceEEEecCCCcccCeEEECCC-CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence            433332    2245445554222223333321 13367778877 3456666666775444443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.05  E-value=0.13  Score=41.98  Aligned_cols=213  Identities=14%  Similarity=0.171  Sum_probs=99.3

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec---cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce-E
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL-K  142 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~  142 (290)
                      ..++.|..  ...+++|. .+ +.+.....++.=..+.   .-.+....+....++. ...++..|.|+.=. +.++. .
T Consensus        64 l~~I~f~~--~~g~ivG~-~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~  137 (302)
T PF14870_consen   64 LNSISFDG--NEGWIVGE-PG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQ  137 (302)
T ss_dssp             EEEEEEET--TEEEEEEE-TT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEES-STTSSEE
T ss_pred             EEEEEecC--CceEEEcC-Cc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCee
Confidence            56677764  34455554 34 3344444333211111   1122333344333333 33334445544332 33332 3


Q ss_pred             EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC-C
Q 022910          143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP-K  221 (290)
Q Consensus       143 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~  221 (290)
                      .......+.+..+.-+++|.+++++.......-|+--...-...-......|..|.|.|++.+.+++ ..|.|++=+. .
T Consensus       138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~  216 (302)
T PF14870_consen  138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD  216 (302)
T ss_dssp             EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred             EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence            3344455778999999999999998876667788865433333333356889999999998776655 8898988772 2


Q ss_pred             CCeeeEE-EeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc---CCCcEEEEEEec
Q 022910          222 SGENIHV-IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS---HTDSIECIGFSR  288 (290)
Q Consensus       222 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~v~~i~~s~  288 (290)
                      ....... +.......-.+..++|.+++...++|+ .|.+ +.....|+--.+-..   -...++.|.|.+
T Consensus       217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~  285 (302)
T PF14870_consen  217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN  285 (302)
T ss_dssp             EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE
T ss_pred             CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcC
Confidence            2222111 111111334578899999877777665 4444 345555654444432   234566666654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.03  E-value=0.23  Score=46.04  Aligned_cols=157  Identities=16%  Similarity=0.168  Sum_probs=98.1

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEEecCCCC--------EEEEEEcC----------------CCCEEEEeeCCCeEE
Q 022910          119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG--------VEWVSWHP----------------RGHIVLAGSEDSTVW  174 (290)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------i~~i~~~~----------------~~~~l~~~~~dg~i~  174 (290)
                      +..++.++.++.|.-.|..+|+.+-.+......        .+.+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            556777788899999999999888776532210        11233321                244788899999999


Q ss_pred             EEECCcccEEEeeecCCCCe-------------EEEEEcC--CCCEEEEEeC----------CCeEEEEcCCCCeeeEEE
Q 022910          175 MWNADRAAYLNMFSGHGSSV-------------TCGDFTP--DGKTICTGSD----------DATLRVWNPKSGENIHVI  229 (290)
Q Consensus       175 i~d~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~  229 (290)
                      -.|.++++....+.. .+.+             ..+.-.|  .+..+++|+.          +|.|+-||.++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998866532 1111             1112223  2446666643          688999999999988776


Q ss_pred             eCCCC---------------cccCeEEEEEcCCCCEEEEEe------------------CCCcEEEEEcCCCcEEEEEcc
Q 022910          230 RGHPY---------------HTEGLTCLTISADSTLALSGS------------------KDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       230 ~~~~~---------------~~~~v~~~~~~~~~~~l~~~~------------------~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      .....               ....-..+++++...+++.+.                  ..+.|.-.|+++|+....++.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            53110               001113345555544444422                  235677888899998887765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK13684 Ycf48-like protein; Provisional

Probab=97.02  E-value=0.15  Score=42.58  Aligned_cols=151  Identities=18%  Similarity=0.161  Sum_probs=85.3

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEE-EccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFW-RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (290)
                      .+.+.++.+.| ++.+++++. .|.+..- +-...........-...++++.+.++++.++++. .|.+++-....+..-
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence            45678889988 666666654 4544321 2111122222233456789999999988776654 576654334444332


Q ss_pred             EEEec----CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee---ecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910          143 CTLEG----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       143 ~~~~~----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                      .....    ....+..+.+.+++..++++ .+|.+.. ....++.-...   .......+.+.|..+++.++ .+..|.|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i  325 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL  325 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence            22221    12357889999877765554 4565543 34444332222   22234677788876666555 4567888


Q ss_pred             EEEcC
Q 022910          216 RVWNP  220 (290)
Q Consensus       216 ~i~d~  220 (290)
                      ..|+-
T Consensus       326 l~~~~  330 (334)
T PRK13684        326 LRYVG  330 (334)
T ss_pred             EEecC
Confidence            77753

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.90  E-value=0.072  Score=47.61  Aligned_cols=114  Identities=16%  Similarity=0.151  Sum_probs=74.5

Q ss_pred             CCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-cCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEcCC-----
Q 022910          150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFT--PDGKTICTGSDDATLRVWNPK-----  221 (290)
Q Consensus       150 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~-----  221 (290)
                      ..++-+.-+.-++..++-+....+.|||.+.+.....-. .....|..+.|.  |+++.+++.+-...|.+|-..     
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344555555555555555555679999999886443322 357889999996  488888888888999998542     


Q ss_pred             ----CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          222 ----SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       222 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                          +...+..+........+|....|.++|.+++.+  .+.+.|++-
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence                112333333222234678899999998766544  347888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.76  E-value=0.0012  Score=59.60  Aligned_cols=99  Identities=9%  Similarity=0.102  Sum_probs=59.0

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--Ceeeee-----eccccCCEEEEEECC---CCCEEEEEeCC
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASE-----IQGHKDSVSSLAFSM---DGQLLASGGLD  128 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~-----~~~~~~~i~~~~~~~---~~~~l~~~~~d  128 (290)
                      .++|..+.|-.++|-..+-..++  ..-|.+.+|++.-  |+....     .......+.-+.|+|   +..++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            45566777777777643322222  3336788998763  333222     223334556667765   55678888888


Q ss_pred             CcEEEEcCCCCceEEEEecCCCCEEEEEEcCC
Q 022910          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR  160 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~  160 (290)
                      +.+++..+.+... ..+.+|...+..++|-..
T Consensus       205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~  235 (1283)
T KOG1916|consen  205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAE  235 (1283)
T ss_pred             CceeEeeechHHH-HHHHhcCCCcccHHHHhh
Confidence            9999887765433 344557666666665433

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.75  E-value=0.15  Score=45.72  Aligned_cols=111  Identities=20%  Similarity=0.255  Sum_probs=72.3

Q ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe-cCCCCEEEEEEc--CCCCEEEEeeCCCeEEEEECCc-----
Q 022910          109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWH--PRGHIVLAGSEDSTVWMWNADR-----  180 (290)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~--~~~~~l~~~~~dg~i~i~d~~~-----  180 (290)
                      ..+-+.-+.-++..++-+....+.|||...+.....-. ...+.|.++.|.  |++..+++.+..+.|.+|--..     
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34444445545544444555689999999887544333 346789999995  5788888888889999985321     


Q ss_pred             ----ccEEEee--ecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC
Q 022910          181 ----AAYLNMF--SGH-GSSVTCGDFTPDGKTICTGSDDATLRVWNPK  221 (290)
Q Consensus       181 ----~~~~~~~--~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  221 (290)
                          ..+++.+  ..+ ..+|....|.++|.+++.+  ...+.|+|-.
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence                1223332  222 3578999999988655544  3578888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.75  E-value=0.37  Score=44.70  Aligned_cols=172  Identities=17%  Similarity=0.157  Sum_probs=107.4

Q ss_pred             EEEEEccCCeeeeeecc--c--cCCEEEEEECCC-CCEEEEEeC----------CCcEEEEcCCCCceEEEEec--CCCC
Q 022910           89 GFFWRINQGDWASEIQG--H--KDSVSSLAFSMD-GQLLASGGL----------DGLVQIWDPSSGNLKCTLEG--PGGG  151 (290)
Q Consensus        89 i~iw~~~~~~~~~~~~~--~--~~~i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~--~~~~  151 (290)
                      ++++|-++.+.....+-  .  -..|.++.|..+ +.++++|..          .|.|.|+.....+.+.....  -.+.
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga  831 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA  831 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence            66677666555443321  1  123455567766 667777753          47888888777433333322  2234


Q ss_pred             EEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC--CCeeeEEE
Q 022910          152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK--SGENIHVI  229 (290)
Q Consensus       152 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~  229 (290)
                      +.++..- +|+++|.  -+..|++|+..+.+.++.-..+..++..+...-.+..+++|..=+.+.+.-.+  .|.....-
T Consensus       832 v~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA  908 (1096)
T KOG1897|consen  832 VYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA  908 (1096)
T ss_pred             eeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee
Confidence            4444322 5655554  45689999999887777777788899999998899999999887777665443  33333222


Q ss_pred             eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      +  ..+....+++.+-.+. .++.+..+|.+++....
T Consensus       909 r--D~~p~Wmtaveil~~d-~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  909 R--DYNPNWMTAVEILDDD-TYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             h--hhCccceeeEEEecCc-eEEeecccccEEEEEec
Confidence            2  2266677777776544 44456667777776543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.74  E-value=0.29  Score=41.46  Aligned_cols=196  Identities=19%  Similarity=0.177  Sum_probs=111.1

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccc--cCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCC-CEEEE
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGH--KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG-GVEWV  155 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~i  155 (290)
                      .++++..+|.|.-.|..+++.+.....-  ...+..-.+..+|+ |+.++.+|.++.+|..+++.+........ .+..-
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            3445577888888888888766543321  12222222323555 78888899999999989998888776651 11111


Q ss_pred             EEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCC---CCeEEEEEcCCCCEEEEEeC--CCeEEEEcCCCCeeeEEEe
Q 022910          156 SWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG---SSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIR  230 (290)
Q Consensus       156 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~  230 (290)
                      ..- ....++.++.++.+...+..+++..-......   ..+..--. .....++.+..  ++.+.-+|+.++......+
T Consensus       149 ~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~  226 (370)
T COG1520         149 PVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQK  226 (370)
T ss_pred             cEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence            111 22244444477899999988887765543221   11111001 12334555555  6678888888887766543


Q ss_pred             CCCCcc-cCe--E-EEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910          231 GHPYHT-EGL--T-CLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       231 ~~~~~~-~~v--~-~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  277 (290)
                      ...... ..+  . .+..-+  -+..++.++.++.+...+..+++.+.++...
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            211011 101  0 111000  1223356677888999999999988888763

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.73  E-value=0.21  Score=39.77  Aligned_cols=147  Identities=19%  Similarity=0.202  Sum_probs=88.2

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc-CCCCceE-E
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSSGNLK-C  143 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~-~  143 (290)
                      .+.+.++++++..+.+....++.-.||-...+.....+. ....+....|++++...+....+...+++. ...+... .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            688999999555454444233444444444433333322 223778889999987766666666666663 3333322 1


Q ss_pred             EEecC--CCCEEEEEEcCCCCEEEEee---CCCeEEEEECCc---c------cEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910          144 TLEGP--GGGVEWVSWHPRGHIVLAGS---EDSTVWMWNADR---A------AYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (290)
Q Consensus       144 ~~~~~--~~~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~~---~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~  209 (290)
                      .+...  .+.|..+.++|+|..++...   .++.|.+--+..   +      ............+..+.|.+++.+++.+
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~  183 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG  183 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence            22211  12799999999999877765   347777765432   2      1122222335688999999998877766


Q ss_pred             eCCC
Q 022910          210 SDDA  213 (290)
Q Consensus       210 ~~dg  213 (290)
                      ...+
T Consensus       184 ~~~~  187 (253)
T PF10647_consen  184 RSAG  187 (253)
T ss_pred             CCCC
Confidence            5544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA03098 kelch-like protein; Provisional

Probab=96.73  E-value=0.038  Score=49.31  Aligned_cols=143  Identities=14%  Similarity=0.212  Sum_probs=71.1

Q ss_pred             CCcEEEEecCC-----CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCC------CcEEEEcCCCCceE
Q 022910           76 DATLVATGGGD-----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLK  142 (290)
Q Consensus        76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~  142 (290)
                      ++.+++.|+.+     ..+..||..+.+....  +....... +++. -+++.++.|+..      ..+..||+.+++..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            44566677754     2467788776654332  21111111 1222 256666666632      45788998876543


Q ss_pred             EEEecCCCC-EEEEEEcCCCCEEEEeeCC--------CeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeC
Q 022910          143 CTLEGPGGG-VEWVSWHPRGHIVLAGSED--------STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSD  211 (290)
Q Consensus       143 ~~~~~~~~~-i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~  211 (290)
                      ..-...... -.+++ ..++..++.|+..        ..+.+||..+.+-...  +.........+.+  ++.+++.|+.
T Consensus       420 ~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~  496 (534)
T PHA03098        420 KGSPLPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGD  496 (534)
T ss_pred             ecCCCCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence            221111110 11122 2256677777643        2388899887654322  1111111122222  5666667665


Q ss_pred             C-----CeEEEEcCCCC
Q 022910          212 D-----ATLRVWNPKSG  223 (290)
Q Consensus       212 d-----g~i~i~d~~~~  223 (290)
                      +     ..|.+||..+.
T Consensus       497 ~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        497 KYEYYINEIEVYDDKTN  513 (534)
T ss_pred             cCCcccceeEEEeCCCC
Confidence            4     46778887654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.72  E-value=0.21  Score=39.50  Aligned_cols=196  Identities=16%  Similarity=0.179  Sum_probs=126.2

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (290)
                      .-+.++-.| ++...++++..|.|--.|..+++....--+....-..|..-|++..-++-+.. -|.-.+-++.+.. ++
T Consensus        63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f  139 (353)
T COG4257          63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RF  139 (353)
T ss_pred             CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-Ee
Confidence            446677777 67777788888888888888888666544455566778888988866664433 4555565555432 22


Q ss_pred             ----ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910          146 ----EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (290)
Q Consensus       146 ----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  220 (290)
                          ...........|.+.|++.+++.. |.---.|-.+ ..++.+.. .....+.|+..|+|...++.-.+..|-..|.
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp  217 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDP  217 (353)
T ss_pred             ecccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccc
Confidence                223456788899999998888763 2111111111 12223322 3345678899999999998888888888898


Q ss_pred             CCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      .++.. ..+............+-.+|.|+.-++....+.+..+|-..
T Consensus       218 ~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         218 FAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             ccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence            87733 34443332234455555667888887777777777777543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.17  Score=38.27  Aligned_cols=175  Identities=13%  Similarity=0.091  Sum_probs=101.0

Q ss_pred             CCcEEEEecC--CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceEEEEecCCCCE
Q 022910           76 DATLVATGGG--DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGPGGGV  152 (290)
Q Consensus        76 ~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  152 (290)
                      ++.++.+.+.  ...|++|++.+++.+...+-....+..=-...-+.++ +..-.+|.-.++|..+.+.+..+.... .-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G-eG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG-EG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC-cc
Confidence            4466666544  3469999999988776544221122111111123332 233458888999999988887776433 24


Q ss_pred             EEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec--CCCC---eEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeE
Q 022910          153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGSS---VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH  227 (290)
Q Consensus       153 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~---i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  227 (290)
                      +.++.  ++..|+.++...+++.-|.++.....++..  ...+   +.-+.|- +|...+-.-.+-.|...+..+|+.+.
T Consensus       134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence            45543  566677777777888888766544333321  1222   2334443 45555544555566677777777655


Q ss_pred             EEeCC---------CCcccCeEEEEEcCCC-CEEEEE
Q 022910          228 VIRGH---------PYHTEGLTCLTISADS-TLALSG  254 (290)
Q Consensus       228 ~~~~~---------~~~~~~v~~~~~~~~~-~~l~~~  254 (290)
                      .+...         ..+....+.+++.|++ +++++|
T Consensus       211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            44322         1244567889999976 566665

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.68  E-value=0.18  Score=45.71  Aligned_cols=113  Identities=12%  Similarity=0.169  Sum_probs=74.3

Q ss_pred             EEEEEEcC--CCCEEEEeeCCCeEEEEECCcc--------------------cEEEeeecCCCCeEEEEEc--CCCCEEE
Q 022910          152 VEWVSWHP--RGHIVLAGSEDSTVWMWNADRA--------------------AYLNMFSGHGSSVTCGDFT--PDGKTIC  207 (290)
Q Consensus       152 i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~--------------------~~~~~~~~~~~~i~~~~~~--~~~~~l~  207 (290)
                      |+.|....  ....|+.+..||.|.+|.+++-                    ++...+. ....+++++++  ...++||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            55554433  3458899999999999976321                    0111122 34578999998  7888999


Q ss_pred             EEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCC---C---EEEEEeCCCcEEEEEc
Q 022910          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS---T---LALSGSKDGSVHMVNI  265 (290)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~~wd~  265 (290)
                      +++....|.||-...............+...|.+++|-++.   .   .|++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            99988888887554321111111111266778999997732   2   7888889999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.31  Score=38.94  Aligned_cols=153  Identities=12%  Similarity=0.092  Sum_probs=97.8

Q ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec-CC-CCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---
Q 022910          108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PG-GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---  182 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---  182 (290)
                      +-+..+.++  +++.+.+..+.-++|.|+.+......... .. +-..++..  .|++..++..+.-+.++|+...+   
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence            345566664  55777777777799999987654333221 12 33344444  68899999877778888887643   


Q ss_pred             EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910          183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (290)
Q Consensus       183 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  262 (290)
                      ...++.........++.|  |++-+.+..|+-+.+.|+.+......+... .....+.++..+++..+++...  --+.+
T Consensus       163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~vvy~--egvli  237 (370)
T COG5276         163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYLVVYD--EGVLI  237 (370)
T ss_pred             eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEEEEcc--cceEE
Confidence            334444444444566665  778888889999999999876554433322 2344788888887766666543  34556


Q ss_pred             EEcCCCc
Q 022910          263 VNITTGK  269 (290)
Q Consensus       263 wd~~~~~  269 (290)
                      -|..+.+
T Consensus       238 vd~s~~s  244 (370)
T COG5276         238 VDVSGPS  244 (370)
T ss_pred             EecCCCC
Confidence            6665544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.27  Score=37.24  Aligned_cols=168  Identities=18%  Similarity=0.168  Sum_probs=99.5

Q ss_pred             CCCEEEEEeC--CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeeecCCCCe
Q 022910          118 DGQLLASGGL--DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV  194 (290)
Q Consensus       118 ~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  194 (290)
                      ++.++.+.+.  ...|++|++.+++.+...+.....+..=-...-+. ..+..-.+|.-.++|.++.+.+..+.- .+.-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence            4445555543  45799999999988766543311111111111233 333345678899999999888877663 3344


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 022910          195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS  272 (290)
Q Consensus       195 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  272 (290)
                      +.++.  ++..|+.+....+++.-|..+.....++....  ..-..++-+.|- +|.++|-.-....|...+..+|+.+.
T Consensus       134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence            55554  55668777777889988887765444333210  011223344443 56666666666778888888888776


Q ss_pred             EEcc------------CCCcEEEEEEecC
Q 022910          273 SLVS------------HTDSIECIGFSRS  289 (290)
Q Consensus       273 ~~~~------------~~~~v~~i~~s~d  289 (290)
                      .+..            |.+..++|++-|+
T Consensus       211 widlS~L~~~~~~~~~~~nvlNGIA~~~~  239 (262)
T COG3823         211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQ  239 (262)
T ss_pred             EEEccCCchhcCccccccccccceeecCc
Confidence            6542            2335567776664

>PLN02193 nitrile-specifier protein

Probab=96.38  E-value=0.62  Score=40.91  Aligned_cols=186  Identities=11%  Similarity=0.174  Sum_probs=90.1

Q ss_pred             CcEEEEecCC-------CcEEEEEccCCeeeeeecc----ccCCE-EEEEECCCCCEEEEEeCC-----CcEEEEcCCCC
Q 022910           77 ATLVATGGGD-------DKGFFWRINQGDWASEIQG----HKDSV-SSLAFSMDGQLLASGGLD-----GLVQIWDPSSG  139 (290)
Q Consensus        77 ~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~----~~~~i-~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  139 (290)
                      ..+++.|+.+       ..+.+||+.+.+....-..    ..... .+++ .-++..++.|+.+     ..+.+||+.+.
T Consensus       176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v-~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMV-SIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEE-EECCEEEEECCCCCCCCCccEEEEECCCC
Confidence            3455566642       2366778777654431110    00111 1121 1245566666654     35888898876


Q ss_pred             ceEEEEec---CCC-CEEEEEEcCCCCEEEEeeCCC-----eEEEEECCcccEEEeee-----cCCCCeEEEEEcCCCCE
Q 022910          140 NLKCTLEG---PGG-GVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAYLNMFS-----GHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       140 ~~~~~~~~---~~~-~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~  205 (290)
                      +....-..   +.. .-.+++. -++++++.|+.++     .+..||+.+.+-...-.     ........+.+  ++++
T Consensus       255 ~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~gki  331 (470)
T PLN02193        255 EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QGKV  331 (470)
T ss_pred             EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CCcE
Confidence            54332111   111 1112222 2566777776543     46778887665332111     01111112222  5667


Q ss_pred             EEEEeCC----CeEEEEcCCCCeeeEEEeCC---CCcccCeEEEEEcCCCCEEEEEeCC--------------CcEEEEE
Q 022910          206 ICTGSDD----ATLRVWNPKSGENIHVIRGH---PYHTEGLTCLTISADSTLALSGSKD--------------GSVHMVN  264 (290)
Q Consensus       206 l~~~~~d----g~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~~wd  264 (290)
                      ++.++.+    ..+.+||+.+.+= ..+...   +.......++.+  ++++++.|+..              ..+.+||
T Consensus       332 yviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D  408 (470)
T PLN02193        332 WVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASAAV--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD  408 (470)
T ss_pred             EEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEEEE--CCEEEEECCccCCccccccCccceeccEEEEE
Confidence            7777655    4588999987542 222211   111111222222  56777777753              2478888


Q ss_pred             cCCCc
Q 022910          265 ITTGK  269 (290)
Q Consensus       265 ~~~~~  269 (290)
                      +.+.+
T Consensus       409 ~~t~~  413 (470)
T PLN02193        409 TETLQ  413 (470)
T ss_pred             cCcCE
Confidence            87654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.36  E-value=0.28  Score=45.06  Aligned_cols=71  Identities=24%  Similarity=0.450  Sum_probs=44.0

Q ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEcCCC----------Cce--EE-EE--------ecCCCCEEEEEEcCC---CCE
Q 022910          108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSS----------GNL--KC-TL--------EGPGGGVEWVSWHPR---GHI  163 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~--~~-~~--------~~~~~~i~~i~~~~~---~~~  163 (290)
                      -.|..+.++|.|.+++..+..| |.|..+..          ++.  .. ++        ......|..+.|||.   +.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4688899999999999988766 55544431          111  11 11        112335667777774   356


Q ss_pred             EEEeeCCCeEEEEECC
Q 022910          164 VLAGSEDSTVWMWNAD  179 (290)
Q Consensus       164 l~~~~~dg~i~i~d~~  179 (290)
                      |++-+.|+++++||+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            6677777777777764

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.41  Score=43.13  Aligned_cols=182  Identities=12%  Similarity=0.144  Sum_probs=93.7

Q ss_pred             CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE---EecCCCCEEEEEEcCCCC
Q 022910           86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT---LEGPGGGVEWVSWHPRGH  162 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~i~~i~~~~~~~  162 (290)
                      ...|+||++. |+.+..+......+-.+.|+.+. .|++...+|++++|++........   +......|..+.+..+|-
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence            3568888865 55555544444478899998655 466668899999999854322211   112223344444444553


Q ss_pred             EEEEeeCCCeEEEEECCcccEEEeeec---CCCCeEEEEEcCCCC---EEEEEe-CCC-eEEEEcCCCCeeeEEEeCCCC
Q 022910          163 IVLAGSEDSTVWMWNADRAAYLNMFSG---HGSSVTCGDFTPDGK---TICTGS-DDA-TLRVWNPKSGENIHVIRGHPY  234 (290)
Q Consensus       163 ~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~---~l~~~~-~dg-~i~i~d~~~~~~~~~~~~~~~  234 (290)
                      .++  ..+|.+.+-.--....++++..   ...+-.|-...+++.   .++-.. ..+ .+..-+....+. ..+..   
T Consensus       141 avl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~-~~~~~---  214 (829)
T KOG2280|consen  141 AVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQL-HALSW---  214 (829)
T ss_pred             EEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccc-cccCC---
Confidence            333  3345544433222212222222   111112222222221   111110 111 011111111111 11111   


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      ..+.+..+..||+.++|+--...|.|.+-+....+.+..+.
T Consensus       215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            23568889999999999999999999999888777666665

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.34  E-value=0.57  Score=39.99  Aligned_cols=149  Identities=13%  Similarity=0.183  Sum_probs=83.0

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-----EE
Q 022910          110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----YL  184 (290)
Q Consensus       110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~  184 (290)
                      ...+..++++.+++.+.....++-|+--...-...-......++.+.+.+++..++++. .|.+.. ....++     ..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~G~l~~-S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-GGGLYV-SKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeC-CceEEE-ecCCCCcccccce
Confidence            34455677777777665433333344221111112222345689999999988777664 455443 333332     12


Q ss_pred             Eeeec--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910          185 NMFSG--HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (290)
Q Consensus       185 ~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  262 (290)
                      .....  ....+..+.|.+++..+++ +..|.+... ...++...............+.+.|.++++.+++| .+|.|..
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~  395 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR  395 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence            22221  2245888999887765555 467766555 34455444433222235668899998776666555 6777765


Q ss_pred             E
Q 022910          263 V  263 (290)
Q Consensus       263 w  263 (290)
                      |
T Consensus       396 ~  396 (398)
T PLN00033        396 Y  396 (398)
T ss_pred             e
Confidence            5

>PHA02790 Kelch-like protein; Provisional

Probab=96.33  E-value=0.16  Score=44.64  Aligned_cols=139  Identities=12%  Similarity=0.095  Sum_probs=69.7

Q ss_pred             CCcEEEEecCC--CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCCC---cEEEEcCCCCceEEEEec-
Q 022910           76 DATLVATGGGD--DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG---LVQIWDPSSGNLKCTLEG-  147 (290)
Q Consensus        76 ~~~~l~~~~~d--g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~-  147 (290)
                      ++.+.+.|+.+  ..+..|+..+++....  +.........+.+  +++..+.|+.++   .+..||..+.+....-.. 
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence            55667777753  3577788766554332  2211111222222  677777776543   467888877654332111 


Q ss_pred             -CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE--eeecCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEc
Q 022910          148 -PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDD-----ATLRVWN  219 (290)
Q Consensus       148 -~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d  219 (290)
                       +......+  .-++.+.+.|   |.+.+||.++.+-..  .+.........+.+  ++++.++|+.+     ..|..||
T Consensus       396 ~~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd  468 (480)
T PHA02790        396 YPHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYN  468 (480)
T ss_pred             CccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEE
Confidence             11111122  2256666666   457788887765432  22211222222222  56677777654     2455666


Q ss_pred             CCCC
Q 022910          220 PKSG  223 (290)
Q Consensus       220 ~~~~  223 (290)
                      ..++
T Consensus       469 ~~~~  472 (480)
T PHA02790        469 NRTY  472 (480)
T ss_pred             CCCC
Confidence            6543

>PLN02153 epithiospecifier protein

Probab=96.18  E-value=0.63  Score=38.95  Aligned_cols=187  Identities=13%  Similarity=0.163  Sum_probs=89.6

Q ss_pred             CCcEEEEecCC-------CcEEEEEccCCeeeeeecc---ccC---CEEEEEECCCCCEEEEEeCC-----CcEEEEcCC
Q 022910           76 DATLVATGGGD-------DKGFFWRINQGDWASEIQG---HKD---SVSSLAFSMDGQLLASGGLD-----GLVQIWDPS  137 (290)
Q Consensus        76 ~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~---~~~---~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~  137 (290)
                      ++.+++.|+.+       ..+.+||+.+.+.......   ...   ....+.+  +++.++.|+.+     ..+.+||+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            44677777653       2577888877654432110   110   1222333  55666666643     357788887


Q ss_pred             CCceEEEEec-----CCCCEEEEEEcCCCCEEEEeeCC-----------CeEEEEECCcccEEEeeec-----CCCCeEE
Q 022910          138 SGNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSED-----------STVWMWNADRAAYLNMFSG-----HGSSVTC  196 (290)
Q Consensus       138 ~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~-----~~~~i~~  196 (290)
                      +.+-...-..     ........+..-++++++.|+.+           ..+.+||+.+.+-...-..     .......
T Consensus       110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~  189 (341)
T PLN02153        110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGF  189 (341)
T ss_pred             CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceE
Confidence            7654321110     11111111222356677777753           2477888877643321110     1111112


Q ss_pred             EEEcCCCCEEEEEeCC-------------CeEEEEcCCCCeeeEEEeC---CCCcccCeEEEEEcCCCCEEEEEeCC---
Q 022910          197 GDFTPDGKTICTGSDD-------------ATLRVWNPKSGENIHVIRG---HPYHTEGLTCLTISADSTLALSGSKD---  257 (290)
Q Consensus       197 ~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d---  257 (290)
                      ..+  ++++++.++.+             ..|.+||+.+.+= ..+..   .+........+.+  ++++++.|+..   
T Consensus       190 ~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W-~~~~~~g~~P~~r~~~~~~~~--~~~iyv~GG~~~~~  264 (341)
T PLN02153        190 AVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW-TEVETTGAKPSARSVFAHAVV--GKYIIIFGGEVWPD  264 (341)
T ss_pred             EEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcE-EeccccCCCCCCcceeeeEEE--CCEEEEECcccCCc
Confidence            222  45665655432             3588898876532 12211   1111111222222  56777777742   


Q ss_pred             -----------CcEEEEEcCCCc
Q 022910          258 -----------GSVHMVNITTGK  269 (290)
Q Consensus       258 -----------g~i~~wd~~~~~  269 (290)
                                 ..|..||+.+.+
T Consensus       265 ~~~~~~~~~~~n~v~~~d~~~~~  287 (341)
T PLN02153        265 LKGHLGPGTLSNEGYALDTETLV  287 (341)
T ss_pred             cccccccccccccEEEEEcCccE
Confidence                       257888876543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.17  E-value=0.00061  Score=57.26  Aligned_cols=138  Identities=17%  Similarity=0.327  Sum_probs=95.0

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEE-EeeCCCeEEEEECCcccEEEeee
Q 022910          110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAYLNMFS  188 (290)
Q Consensus       110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~  188 (290)
                      .....|.|.+.-++.++.+..+..||-. ++...... ..+....++|..++..++ .+-..+.+++|++.+......-.
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence            3455678877778888888889999854 44443433 344566788888877554 45667899999997653222111


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEE
Q 022910          189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL  252 (290)
Q Consensus       189 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (290)
                      +....-.-+.|++....++.+...|.+.||+..+.+.+-....   |...+++++|.+.+..+.
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk---h~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK---HQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc---cccceeEEEecccceeee
Confidence            2222222377999889999999999999999887765544433   677889999988765444

>PRK10115 protease 2; Provisional

Probab=96.13  E-value=1.1  Score=41.38  Aligned_cols=111  Identities=9%  Similarity=0.069  Sum_probs=68.7

Q ss_pred             CCEEEEEECCCCCEEEEEeC-----CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC------CeEEEE
Q 022910          108 DSVSSLAFSMDGQLLASGGL-----DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------STVWMW  176 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~i~  176 (290)
                      -.+..+.|+|++++|+.+..     ...|++.++.++..+...-....  ..++|.++++.|+.+..+      ..|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            34677889999998887633     24688999988864322211111  459999998866665432      368888


Q ss_pred             ECCcc--cEEEeeecCCCCeE-EEEEcCCCCEEEEEeC---CCeEEEEcC
Q 022910          177 NADRA--AYLNMFSGHGSSVT-CGDFTPDGKTICTGSD---DATLRVWNP  220 (290)
Q Consensus       177 d~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~i~i~d~  220 (290)
                      ++.++  +....+........ .+..+.++++++..+.   ++.+.+|+.
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            88877  33334443333333 3333447777665443   457888884

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.13  E-value=0.00073  Score=56.80  Aligned_cols=137  Identities=12%  Similarity=0.192  Sum_probs=94.4

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCE-EEEEeCCCcEEEEcCCCCceEEEE
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL-LASGGLDGLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~  145 (290)
                      -....|-|.+.+ ++.++.+-.+..||-.. +...... ..+....++|..++.. ++.+-..+.+.+|++.+....+.-
T Consensus        37 pi~~~w~~e~~n-lavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   37 PIIHRWRPEGHN-LAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             cceeeEecCCCc-eehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            345567885666 66677788888898553 3333333 3455677889887775 444556789999999865322111


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEE
Q 022910          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (290)
Q Consensus       146 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  206 (290)
                      .+....-.-+.|++....++.+...|.+.+++..+.+.+...-.|...++++++.+.+..+
T Consensus       114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence            1112222237899988899999999999999998877666665588899999999876443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.12  E-value=0.65  Score=38.59  Aligned_cols=146  Identities=17%  Similarity=0.280  Sum_probs=86.7

Q ss_pred             cCCEEEEEECCCCCEEEEEeCCCc------EEEEcCCC--C--ceE-----EEEecCCC--------CEEEEEEcCCCCE
Q 022910          107 KDSVSSLAFSMDGQLLASGGLDGL------VQIWDPSS--G--NLK-----CTLEGPGG--------GVEWVSWHPRGHI  163 (290)
Q Consensus       107 ~~~i~~~~~~~~~~~l~~~~~dg~------i~i~d~~~--~--~~~-----~~~~~~~~--------~i~~i~~~~~~~~  163 (290)
                      -+.++.+.+.+++..+++.+.+|.      +..+.+..  +  ..+     ..+....+        -.-+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356788888866666666677777      65555543  1  111     11121211        2346788777877


Q ss_pred             EEEeeCC------CeEEEEECCcccEEEeee---------------cCCCCeEEEEEcCCCCEEEEEeCC-----C----
Q 022910          164 VLAGSED------STVWMWNADRAAYLNMFS---------------GHGSSVTCGDFTPDGKTICTGSDD-----A----  213 (290)
Q Consensus       164 l~~~~~d------g~i~i~d~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~d-----g----  213 (290)
                      +++.-.+      ..|+.++.. ++.+..+.               ..+...-+|+++|+|+.|+++...     +    
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7777666      788888876 54433331               134568899999999977665432     2    


Q ss_pred             -------eEEEEcCCC-Ceee--EEEeCCC----CcccCeEEEEEcCCCCEEEE
Q 022910          214 -------TLRVWNPKS-GENI--HVIRGHP----YHTEGLTCLTISADSTLALS  253 (290)
Q Consensus       214 -------~i~i~d~~~-~~~~--~~~~~~~----~~~~~v~~~~~~~~~~~l~~  253 (290)
                             .|..||..+ +...  ..+....    .....++.+.+-+++++|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                   244456654 2222  2222211    03467888999999987765

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=96.12  E-value=0.79  Score=40.30  Aligned_cols=142  Identities=17%  Similarity=0.207  Sum_probs=70.6

Q ss_pred             CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCC---EEEEEEcCCCC
Q 022910           86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG---VEWVSWHPRGH  162 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---i~~i~~~~~~~  162 (290)
                      .+...++|.. |..+..+.........+...++|.+++...  ..++.+|+. |+.+..+....+.   -..+..-|+|+
T Consensus       127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn  202 (477)
T PF05935_consen  127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN  202 (477)
T ss_dssp             EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred             CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC
Confidence            3445555533 344444332222221266778888777655  788899985 6665555443322   24577788999


Q ss_pred             EEEEeeC-------------CCeEEEEECCcccEEEeeec--C-------------------------CCCeEEEEEcC-
Q 022910          163 IVLAGSE-------------DSTVWMWNADRAAYLNMFSG--H-------------------------GSSVTCGDFTP-  201 (290)
Q Consensus       163 ~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~--~-------------------------~~~i~~~~~~~-  201 (290)
                      +|+.+..             .-.|..+| .+++.+..+..  |                         =..+.++.+.+ 
T Consensus       203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~  281 (477)
T PF05935_consen  203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS  281 (477)
T ss_dssp             EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred             EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence            8888772             12355555 55554443211  0                         02478999999 


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCC
Q 022910          202 DGKTICTGSDDATLRVWNPKSGENIHVIRGH  232 (290)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  232 (290)
                      ++.+|+++-.-..|...|.++++....+..+
T Consensus       282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  282 DDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             TTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             CCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            4444455544558999998888887777643

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=96.03  E-value=0.83  Score=40.17  Aligned_cols=147  Identities=14%  Similarity=0.167  Sum_probs=78.7

Q ss_pred             CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCC---eEEEEEcCCC
Q 022910          127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS---VTCGDFTPDG  203 (290)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---i~~~~~~~~~  203 (290)
                      ..+...++|.. |..+..+.........+...++|.+++...  ..++.+|+. |+.+..+......   =..+...|+|
T Consensus       126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG  201 (477)
T PF05935_consen  126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG  201 (477)
T ss_dssp             BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred             CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence            35566677743 555544443332222256677888776655  789999985 5555544432221   2456678899


Q ss_pred             CEEEEEeC-------------CCeEEEEcCCCCeeeEEEeCCCC------------------------cccCeEEEEEcC
Q 022910          204 KTICTGSD-------------DATLRVWNPKSGENIHVIRGHPY------------------------HTEGLTCLTISA  246 (290)
Q Consensus       204 ~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~~------------------------~~~~v~~~~~~~  246 (290)
                      ++|+.+..             .-.|..+| .+|+.+..+.....                        .=..++++.+.+
T Consensus       202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~  280 (477)
T PF05935_consen  202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP  280 (477)
T ss_dssp             -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred             CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence            99987771             12366667 67776655432110                        002378999998


Q ss_pred             -CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910          247 -DSTLALSGSKDGSVHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       247 -~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  278 (290)
                       ++.+|+++-.-..|...|.++++....+-.+.
T Consensus       281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~  313 (477)
T PF05935_consen  281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG  313 (477)
T ss_dssp             TTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred             CCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence             66777777666789999999999988887654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.99  E-value=0.8  Score=38.80  Aligned_cols=151  Identities=19%  Similarity=0.192  Sum_probs=87.0

Q ss_pred             EEEEEeCCCcEEEEcCCCCceEEEEecCC--CCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCC-CeEEE
Q 022910          121 LLASGGLDGLVQIWDPSSGNLKCTLEGPG--GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCG  197 (290)
Q Consensus       121 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~  197 (290)
                      .++++..+|.|.-.|..+++.+-......  ..+..-.+..+|+ +++++.+|.++.+|.++++.+-....... .+..-
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            45556778889999998888654333221  1122222222554 88888889999999988888877765541 11111


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCcEEEEE
Q 022910          198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK--DGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~  274 (290)
                      ..- ....++.++.++.+...+..++...............+..-... ....++.+..  ++.+.-.+..+|......
T Consensus       149 ~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         149 PVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             cEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeee
Confidence            111 22344445578999999999998876655321000001000001 2234444444  567777888788776664

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.95  E-value=0.34  Score=33.93  Aligned_cols=113  Identities=9%  Similarity=0.197  Sum_probs=72.2

Q ss_pred             EEEcCCCCEEEEeeCCCeEEEEECCccc--------EEEeeecCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEcCC
Q 022910          155 VSWHPRGHIVLAGSEDSTVWMWNADRAA--------YLNMFSGHGSSVTCGDFTP-----DGKTICTGSDDATLRVWNPK  221 (290)
Q Consensus       155 i~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~  221 (290)
                      -.|.....-|++++..|.|.|++.....        .++.+. ....|++|+-.+     ....|+.|+. ..|..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            4566666788889999999999876432        233333 456777776544     3466777765 468899998


Q ss_pred             CCeeeEEEeCCCCcccCeEEEEEcC----CCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910          222 SGENIHVIRGHPYHTEGLTCLTISA----DSTLALSGSKDGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~wd~~~~~~~~~~  274 (290)
                      .+.-+....    ....++++.+-.    ...++++ +.+..|.-||..-.+...+.
T Consensus        82 ~N~d~Fyke----~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   82 NNSDLFYKE----VPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             cCchhhhhh----CccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEEe
Confidence            776544333    456677777743    2344444 45667888886655555544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.94  E-value=0.051  Score=29.66  Aligned_cols=32  Identities=16%  Similarity=0.121  Sum_probs=27.2

Q ss_pred             cCEEEEEECCCCC--cEEEEecCCCcEEEEEccC
Q 022910           65 DEVYSVACSPTDA--TLVATGGGDDKGFFWRINQ   96 (290)
Q Consensus        65 ~~v~~~~~~~~~~--~~l~~~~~dg~i~iw~~~~   96 (290)
                      ++|.++.|+|...  .+|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            5789999998555  6888888889999999985

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.90  E-value=1.4  Score=40.66  Aligned_cols=74  Identities=15%  Similarity=0.168  Sum_probs=50.3

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccC----------Ce--eeee-e--------ccccCCEEEEEECCC---C
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----------GD--WASE-I--------QGHKDSVSSLAFSMD---G  119 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~--~~~~-~--------~~~~~~i~~~~~~~~---~  119 (290)
                      .-.|..|.++| .+.++|..|..| |.|-.+..          ++  ...+ +        ..+...|..+.|+|.   +
T Consensus        84 ~f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   84 LFEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             ceeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            45789999999 667777666655 44444421          11  1111 1        124457899999996   4


Q ss_pred             CEEEEEeCCCcEEEEcCCCC
Q 022910          120 QLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~  139 (290)
                      .+|++-+.|+++++||+...
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CeEEEEecCCEEEEEecCCC
Confidence            78999999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.38  Score=40.89  Aligned_cols=138  Identities=13%  Similarity=0.144  Sum_probs=85.4

Q ss_pred             EEEEECCCCCcEEEEecCCCcEEEEEccCCe--eeeee-ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE--
Q 022910           68 YSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEI-QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--  142 (290)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--  142 (290)
                      +.+-|...+..++++-  .|.+.=|-+....  ..-.+ ....++|.++.|++|.+.||+--.+.+|.+++....+..  
T Consensus        26 ngvFfDDaNkqlfavr--SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVR--SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             cceeeccCcceEEEEe--cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence            3444443233444443  3556666655432  11122 234679999999999999999999999999998443322  


Q ss_pred             --EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc-ccEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910          143 --CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (290)
Q Consensus       143 --~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  209 (290)
                        ...+.....|....|+.. .-+|.....| +-+|-+.. .+.++..+.++..|.-..|.++.+.++.+
T Consensus       104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence              223334456889999865 5566655545 45554332 23455556677788888888877665443

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.82  E-value=0.76  Score=36.87  Aligned_cols=157  Identities=15%  Similarity=0.093  Sum_probs=97.1

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc--ccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-  140 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-  140 (290)
                      .+-+..+.++.   .++..+..+.-++|.|+.+......+..  -.+-..++..  .|++..++..+.-+.+.|+.+.+ 
T Consensus        86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence            44556666664   4555666777899999987654333221  1133344444  78888888866667788886553 


Q ss_pred             --eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910          141 --LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       141 --~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                        +..++.........++.+  |++-..+..++-+.+.|+....   .+.... ....+.++..+++-.+++..  +--+
T Consensus       161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~egv  235 (370)
T COG5276         161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEGV  235 (370)
T ss_pred             ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccce
Confidence              333444455555666664  7788888899999999997653   222322 23367777777665544443  3346


Q ss_pred             EEEcCCCCeeeEEEe
Q 022910          216 RVWNPKSGENIHVIR  230 (290)
Q Consensus       216 ~i~d~~~~~~~~~~~  230 (290)
                      .+-|..+.+....+.
T Consensus       236 livd~s~~ssp~~~g  250 (370)
T COG5276         236 LIVDVSGPSSPTVFG  250 (370)
T ss_pred             EEEecCCCCCceEee
Confidence            677776665544443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.81  E-value=0.064  Score=29.29  Aligned_cols=32  Identities=13%  Similarity=0.280  Sum_probs=26.9

Q ss_pred             CCEEEEEEcCCC---CEEEEeeCCCeEEEEECCcc
Q 022910          150 GGVEWVSWHPRG---HIVLAGSEDSTVWMWNADRA  181 (290)
Q Consensus       150 ~~i~~i~~~~~~---~~l~~~~~dg~i~i~d~~~~  181 (290)
                      +.++++.|+|..   .+|+.+-..|.|.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   48888888999999999953

It contains a characteristic DLL sequence motif.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.81  E-value=1  Score=38.41  Aligned_cols=145  Identities=18%  Similarity=0.209  Sum_probs=79.7

Q ss_pred             EEEEEECCCCCcEEEEecCCCcE-EEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-----
Q 022910           67 VYSVACSPTDATLVATGGGDDKG-FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----  140 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i-~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----  140 (290)
                      ...+..++ ++.+++.+.. |.+ +-|+--.......-......+..+.|.+++..++++ ..|.+.. ....++     
T Consensus       241 f~~v~~~~-dG~~~~vg~~-G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSP-DGDYVAVSSR-GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcC-CCCEEEEECC-ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence            44455566 5566666543 433 233322111122222235578999999998877665 4565443 334443     


Q ss_pred             eEEEEec--CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee---ecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910          141 LKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       141 ~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                      .......  ....+..+.|.+++..+++| ..|.+.... ..++.-...   ......++.+.|.++++.+++| .+|.|
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i  393 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL  393 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence            1222221  22358889999877665555 457666553 344432222   2334678899998776655554 67877


Q ss_pred             EEE
Q 022910          216 RVW  218 (290)
Q Consensus       216 ~i~  218 (290)
                      ..|
T Consensus       394 l~~  396 (398)
T PLN00033        394 LRY  396 (398)
T ss_pred             EEe
Confidence            655

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.71  E-value=0.44  Score=33.40  Aligned_cols=116  Identities=11%  Similarity=0.073  Sum_probs=73.5

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEcCCCC--------ceEEEEecCCCCEEEEEEcC-----CCCEEEEeeCCCeEEEEEC
Q 022910          112 SLAFSMDGQLLASGGLDGLVQIWDPSSG--------NLKCTLEGPGGGVEWVSWHP-----RGHIVLAGSEDSTVWMWNA  178 (290)
Q Consensus       112 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~i~~i~~~~-----~~~~l~~~~~dg~i~i~d~  178 (290)
                      .-+|......|++++..|.|.|++....        ..+..+. -...|++++-.+     ....|+.|+. ..|..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence            3456555667888899999999987643        2344444 344577776544     2346777765 67999999


Q ss_pred             CcccEEEeeecCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEcCCCCeeeEEEe
Q 022910          179 DRAAYLNMFSGHGSSVTCGDFTP---DGKTICTGSDDATLRVWNPKSGENIHVIR  230 (290)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  230 (290)
                      ....-+... .....+.++.+-.   ...-++..+.+..|.-||....+...++.
T Consensus        81 ~~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt  134 (136)
T PF14781_consen   81 ENNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT  134 (136)
T ss_pred             ccCchhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence            877544322 2345677776632   22335555557788889887666655543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.71  E-value=0.65  Score=39.71  Aligned_cols=97  Identities=14%  Similarity=0.202  Sum_probs=70.1

Q ss_pred             CCCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEEC----CCC-----
Q 022910           49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS----MDG-----  119 (290)
Q Consensus        49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~----~~~-----  119 (290)
                      +...+......|......+.++..+| .+.+.|+...=|.|.++|+.++..++..++....  .+.|.    +..     
T Consensus       292 ~~~~~l~~r~~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~  368 (415)
T PF14655_consen  292 EPAAPLPMRFGLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSN  368 (415)
T ss_pred             CCCcccceEEeeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeeccccccccc
Confidence            34456667778888888999999999 6888888888899999999998887777664432  11121    000     


Q ss_pred             ----------C--EEEEEeCCCcEEEEcCCCCceEEEEecC
Q 022910          120 ----------Q--LLASGGLDGLVQIWDPSSGNLKCTLEGP  148 (290)
Q Consensus       120 ----------~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~  148 (290)
                                .  +++-+-.-|.|-||.++++..+..+...
T Consensus       369 ~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  369 SNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             ccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence                      1  2344566789999999998887776643

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.45  E-value=1.5  Score=37.67  Aligned_cols=151  Identities=12%  Similarity=0.041  Sum_probs=0.0

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCe-----eeeeeccccCCEEEEEE----CCCCCEEEEEeCCCcEEEEcC-
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGHKDSVSSLAF----SMDGQLLASGGLDGLVQIWDP-  136 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~i~~~~~----~~~~~~l~~~~~dg~i~i~d~-  136 (290)
                      |-.+.-++++...|++|+..|.++||+.....     .+...+ -..+|..+..    +......++.-.-..+.||.+ 
T Consensus        27 v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~  105 (418)
T PF14727_consen   27 VGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS  105 (418)
T ss_pred             EEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEE


Q ss_pred             --------CCCceEEEEecCCCCEEEEEEcC-------CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC
Q 022910          137 --------SSGNLKCTLEGPGGGVEWVSWHP-------RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP  201 (290)
Q Consensus       137 --------~~~~~~~~~~~~~~~i~~i~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  201 (290)
                              .+.-.+..+..|.-.-.+..+..       ...++.+-+-||.+.+|+-+.....+.+.. ---...+.|.+
T Consensus       106 ~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~  184 (418)
T PF14727_consen  106 LVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCP  184 (418)
T ss_pred             ecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEee


Q ss_pred             CCCEEEEEeCCCeEEEEc
Q 022910          202 DGKTICTGSDDATLRVWN  219 (290)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d  219 (290)
                      .-..|++++.+..|.-|.
T Consensus       185 ~tDsfvt~sss~~l~~Yk  202 (418)
T PF14727_consen  185 RTDSFVTASSSWTLECYK  202 (418)
T ss_pred             cCCEEEEecCceeEEEec

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.44  E-value=1.1  Score=40.84  Aligned_cols=142  Identities=9%  Similarity=0.064  Sum_probs=89.1

Q ss_pred             CcEEEEecCCCcEEEEEccCCeeee------ee----------------ccccCCEEEEEECC--CCCEEEEEeCCCcEE
Q 022910           77 ATLVATGGGDDKGFFWRINQGDWAS------EI----------------QGHKDSVSSLAFSM--DGQLLASGGLDGLVQ  132 (290)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~~~~~------~~----------------~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~  132 (290)
                      .++++++. .+.|.||+........      .+                ......|+.|....  +...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            44555554 5899999986432211      11                00112355554432  345788899999999


Q ss_pred             EEcCCC-------C-------------ceEEEEecCCCCEEEEEEc--CCCCEEEEeeCCCeEEEEECCcc--cE-EEee
Q 022910          133 IWDPSS-------G-------------NLKCTLEGPGGGVEWVSWH--PRGHIVLAGSEDSTVWMWNADRA--AY-LNMF  187 (290)
Q Consensus       133 i~d~~~-------~-------------~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~dg~i~i~d~~~~--~~-~~~~  187 (290)
                      +|.+++       .             ++...+. ....++.++++  ...++||++++...|.||-+...  +. ...-
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            996521       0             1122223 23468999998  88889999999888888765442  11 1111


Q ss_pred             ecCCCCeEEEEEcCCC---C---EEEEEeCCCeEEEEcC
Q 022910          188 SGHGSSVTCGDFTPDG---K---TICTGSDDATLRVWNP  220 (290)
Q Consensus       188 ~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~  220 (290)
                      ..+...|.+|+|.++.   .   ++++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1256678899998743   2   7788889999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.42  E-value=0.87  Score=34.84  Aligned_cols=141  Identities=16%  Similarity=0.162  Sum_probs=79.4

Q ss_pred             CEEEEEeCCCcEEEEcCC--CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC---C---eEEEE---ECC--cccEEE-
Q 022910          120 QLLASGGLDGLVQIWDPS--SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---S---TVWMW---NAD--RAAYLN-  185 (290)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g---~i~i~---d~~--~~~~~~-  185 (290)
                      +.|+.+...+.|.+|++.  ..+++.+|..- +.|..+.++..|++|++--.+   .   .+|+|   ...  ..++++ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            455444667889999988  34556677655 679999999999999985432   2   56664   222  111111 


Q ss_pred             eeec---------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee-e---EEEeC--C---CCc
Q 022910          186 MFSG---------------------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-I---HVIRG--H---PYH  235 (290)
Q Consensus       186 ~~~~---------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~---~~~~~--~---~~~  235 (290)
                      ++-+                     ...++.+++..|-..-|++|+ ++.+.+|.+..... .   ..+.-  .   ...
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~  186 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID  186 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence            1111                     244677888888433455554 45788887764332 1   11110  0   001


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          236 TEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       236 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      .-.+..+++.  +.|+|..+ +-.++++.+
T Consensus       187 ~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  187 NFKPTQVAIC--EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             CceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence            1224555554  55777665 446666654

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=95.37  E-value=1  Score=35.46  Aligned_cols=144  Identities=14%  Similarity=0.255  Sum_probs=80.7

Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-C--CeEEEEECCc----ccEEEe--eecCCCCeEEEEEcC
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADR----AAYLNM--FSGHGSSVTCGDFTP  201 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~----~~~~~~--~~~~~~~i~~~~~~~  201 (290)
                      -.+||+.+++....-.....-...-.+-++|++|.+|+. +  ..+++++...    ......  .-.....-.+....|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            457898887654322222222233456789999999876 2  3477777544    111110  011233444556678


Q ss_pred             CCCEEEEEeCCCe-EEEEcCCCC-eeeEEE---eCC--CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910          202 DGKTICTGSDDAT-LRVWNPKSG-ENIHVI---RGH--PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       202 ~~~~l~~~~~dg~-i~i~d~~~~-~~~~~~---~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  274 (290)
                      +|+.|+.|+.... ..+|..+.. .....+   ...  .....--..+...|+|++++.+..+.  .+||..+.+.++.+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence            9999999887753 344444221 111111   100  00112233566789999999887654  45788888877777


Q ss_pred             cc
Q 022910          275 VS  276 (290)
Q Consensus       275 ~~  276 (290)
                      ..
T Consensus       206 P~  207 (243)
T PF07250_consen  206 PD  207 (243)
T ss_pred             CC
Confidence            64

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.35  E-value=1.4  Score=36.76  Aligned_cols=218  Identities=12%  Similarity=0.142  Sum_probs=108.6

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCee---eeee----ccccCCEEEEEECCC---CCEEEEEeCC-------
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDW---ASEI----QGHKDSVSSLAFSMD---GQLLASGGLD-------  128 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~----~~~~~~i~~~~~~~~---~~~l~~~~~d-------  128 (290)
                      .-++|+|.| ++.+|++ ...|.|++++ ..+..   +..+    .........++++|+   ..+|++....       
T Consensus         3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            457899999 6777765 5589999999 33332   2222    234457899999994   3344443321       


Q ss_pred             --CcEEEEcCCCC-------ceE-EEEec---CCCCEEEEEEcCCCCEEEEeeCC-------------CeEEEEECCccc
Q 022910          129 --GLVQIWDPSSG-------NLK-CTLEG---PGGGVEWVSWHPRGHIVLAGSED-------------STVWMWNADRAA  182 (290)
Q Consensus       129 --g~i~i~d~~~~-------~~~-~~~~~---~~~~i~~i~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~  182 (290)
                        ..|.-|.+..+       +.+ ..+..   .......|.|.|++.++++.+..             |.|.-.+....-
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~  159 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI  159 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence              23444444333       111 11222   22346779999999766665433             233333332110


Q ss_pred             ------------EEEeeecCCCCeEEEEEcCC-CCEEEEE-eCCCeEEEEcCCCCe------------------------
Q 022910          183 ------------YLNMFSGHGSSVTCGDFTPD-GKTICTG-SDDATLRVWNPKSGE------------------------  224 (290)
Q Consensus       183 ------------~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~~dg~i~i~d~~~~~------------------------  224 (290)
                                  ....+..--.....++|+|. ++++++= +.++.=.|.-+..+.                        
T Consensus       160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~  239 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC  239 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred             CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence                        00111111123567899998 6555432 222211121111111                        


Q ss_pred             -----eeEEEeCCCCcccCeEEEEEcC-------CCCEEEEEeCCCcEEEEEcCCCcEEE---EE-ccCCCcEEEEEEec
Q 022910          225 -----NIHVIRGHPYHTEGLTCLTISA-------DSTLALSGSKDGSVHMVNITTGKVVS---SL-VSHTDSIECIGFSR  288 (290)
Q Consensus       225 -----~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~~wd~~~~~~~~---~~-~~~~~~v~~i~~s~  288 (290)
                           +...+.    +...+..+.|.+       .|.++++.-..+.|....+..+..+.   .+ ......+..|++.|
T Consensus       240 ~~~~~P~~~~~----~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p  315 (331)
T PF07995_consen  240 PGFVPPVFAYP----PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP  315 (331)
T ss_dssp             TTS---SEEET----TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred             CCcCccceeec----CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence                 111111    234566777753       45577766667788888887554332   22 23344899999999


Q ss_pred             CC
Q 022910          289 SE  290 (290)
Q Consensus       289 d~  290 (290)
                      ||
T Consensus       316 DG  317 (331)
T PF07995_consen  316 DG  317 (331)
T ss_dssp             TS
T ss_pred             CC
Confidence            97

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.26  E-value=0.66  Score=39.50  Aligned_cols=124  Identities=9%  Similarity=0.046  Sum_probs=78.4

Q ss_pred             CCCcEEEEcCCCC---ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE----EeeecCCCCeEEEEE
Q 022910          127 LDGLVQIWDPSSG---NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL----NMFSGHGSSVTCGDF  199 (290)
Q Consensus       127 ~dg~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~~~~  199 (290)
                      ..|.+.-|-+...   -++..-....++|.++.|++|.+.||+--.+..|.+++....+..    .+.+.....|....|
T Consensus        41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W  120 (657)
T KOG2377|consen   41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW  120 (657)
T ss_pred             ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE
Confidence            3455555554322   122222335568999999999999999999999999998443322    233344556889999


Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCEEEEEe
Q 022910          200 TPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGS  255 (290)
Q Consensus       200 ~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (290)
                      +.. .-++.-+..| +-+|-....+ .++.++.   +...|+...|+++.+.++-++
T Consensus       121 ~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks---~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  121 TSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKS---HNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             ecC-eeEEEEecCC-eEEEEEchhhhhhhhhhh---cccCccEEEEccccceEeeec
Confidence            866 4555555444 5666543322 2333333   677899999999877544443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=95.10  E-value=1.6  Score=36.14  Aligned_cols=106  Identities=13%  Similarity=0.214  Sum_probs=53.7

Q ss_pred             CCcEEEEecCCC-----cEEEEEccCCeee---eee---ccccCCEEEEEECCCCCEEEEEeC-----CCcEEEEcCCCC
Q 022910           76 DATLVATGGGDD-----KGFFWRINQGDWA---SEI---QGHKDSVSSLAFSMDGQLLASGGL-----DGLVQIWDPSSG  139 (290)
Q Consensus        76 ~~~~l~~~~~dg-----~i~iw~~~~~~~~---~~~---~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~  139 (290)
                      +..+++.|+.++     .+..||+.+.+..   ..+   ....... +++. -+++.++.|+.     ...+..||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            445667776543     4666777665531   112   1111111 2222 25566666653     246888898876


Q ss_pred             ceEEEEecCC-CCEEEEEEcCCCCEEEEeeCCC----eEEEEECCcccE
Q 022910          140 NLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDS----TVWMWNADRAAY  183 (290)
Q Consensus       140 ~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~~  183 (290)
                      +-...-.... ......+...++++++.|+.++    .+.+||+.+.+-
T Consensus       150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            5433211111 1112222233677777777654    356888887653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.07  E-value=1.1  Score=34.22  Aligned_cols=104  Identities=14%  Similarity=0.264  Sum_probs=62.7

Q ss_pred             CEEEEeeCCCeEEEEECCc--ccEEEeeecCCCCeEEEEEcCCCCEEEEEeC---CC---eEEEE---cCC--CCeeeE-
Q 022910          162 HIVLAGSEDSTVWMWNADR--AAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DA---TLRVW---NPK--SGENIH-  227 (290)
Q Consensus       162 ~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg---~i~i~---d~~--~~~~~~-  227 (290)
                      ..|+.+...+.|.+|++.+  .+.+.++..- +.|..+.++..|++|++-=.   ..   .+|+|   ...  ...++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            4454546668899999983  3455666543 78899999999999998422   22   56664   222  111111 


Q ss_pred             EEeCCC------------------CcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 022910          228 VIRGHP------------------YHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       228 ~~~~~~------------------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                      .+.++.                  ....++.+++-.| .|++| +|+ ++.+.+|.++..
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence            111110                  0234677888888 55554 454 458888987643

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.06  E-value=0.16  Score=27.44  Aligned_cols=41  Identities=17%  Similarity=0.201  Sum_probs=30.3

Q ss_pred             CCCCEEEEEe-CCCcEEEEEcCCCcEEEEEccCCCcEEEEEEe
Q 022910          246 ADSTLALSGS-KDGSVHMVNITTGKVVSSLVSHTDSIECIGFS  287 (290)
Q Consensus       246 ~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s  287 (290)
                      |++++|+++. .+++|.++|..+++.+.++.. ......++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence            5677666655 478999999999999998887 3445566654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.04  E-value=0.29  Score=38.06  Aligned_cols=65  Identities=18%  Similarity=0.298  Sum_probs=49.0

Q ss_pred             EcCCCCEEEEeeCCCeEEEEECCcccEEEee-------e-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910          157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-------S-------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (290)
Q Consensus       157 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  222 (290)
                      +...+.+|++.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3447889999999999999999988654322       1       2456788889998887776654 57889998753

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.95  E-value=0.27  Score=38.19  Aligned_cols=73  Identities=16%  Similarity=0.188  Sum_probs=51.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEE-e---CCC-------CcccCeEEEEEcCCCCEEEEEeCCCcE
Q 022910          192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI-R---GHP-------YHTEGLTCLTISADSTLALSGSKDGSV  260 (290)
Q Consensus       192 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i  260 (290)
                      .++..+.  ..+.+|++-+.+|.+++||+.+++.+..- .   ...       .....|..+.++.+|.-|++-+ +|..
T Consensus        13 s~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~   89 (219)
T PF07569_consen   13 SPVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDS   89 (219)
T ss_pred             CceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence            3444444  46889999999999999999988764322 0   000       2456788899998887776654 6788


Q ss_pred             EEEEcCC
Q 022910          261 HMVNITT  267 (290)
Q Consensus       261 ~~wd~~~  267 (290)
                      +.|+..-
T Consensus        90 y~y~~~L   96 (219)
T PF07569_consen   90 YSYSPDL   96 (219)
T ss_pred             EEecccc
Confidence            9998653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=94.77  E-value=3.6  Score=38.52  Aligned_cols=71  Identities=7%  Similarity=0.006  Sum_probs=50.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEE----eCCC------------CcccCeEEEEEcCCCCEEEEE
Q 022910          191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI----RGHP------------YHTEGLTCLTISADSTLALSG  254 (290)
Q Consensus       191 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~------------~~~~~v~~~~~~~~~~~l~~~  254 (290)
                      ...|.++....-+.+++....||+|.++|..+.+.+...    ....            .....+-.++|||.+..++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            356777777777888999999999999998877554333    1000            011134468899999999988


Q ss_pred             eCCCcEE
Q 022910          255 SKDGSVH  261 (290)
Q Consensus       255 ~~dg~i~  261 (290)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            8888865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.76  E-value=1.4  Score=40.04  Aligned_cols=163  Identities=13%  Similarity=0.148  Sum_probs=84.4

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee-ee--ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS-EI--QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      ..+++..+.|+. +..+| +-..+|++++|++....... ..  ......|..+.|..+|-.+.  ..+|.+.+-+-...
T Consensus        82 ~~~~lI~mgWs~-~eeLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavl--t~~g~v~~i~~~~~  157 (829)
T KOG2280|consen   82 KHGELIGMGWSD-DEELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVL--TVSGQVILINGVEE  157 (829)
T ss_pred             cCCCeeeecccC-CceEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEE--ecCCcEEEEcCCCc
Confidence            345888999997 55454 56789999999986432222 11  22344566666666664333  33455555443222


Q ss_pred             ceEEEEec-CCCCEEEEEE--cCCCC---EEEEee-CCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeC
Q 022910          140 NLKCTLEG-PGGGVEWVSW--HPRGH---IVLAGS-EDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (290)
Q Consensus       140 ~~~~~~~~-~~~~i~~i~~--~~~~~---~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  211 (290)
                      ..+..++. +.....+.+|  .+++.   .++-.. ..+ ..++-.... .....+....+.+..+..||+.++|+--..
T Consensus       158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~  236 (829)
T KOG2280|consen  158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE  236 (829)
T ss_pred             chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec
Confidence            22223322 1111111222  22211   111111 000 011111111 111222223466788999999999999999


Q ss_pred             CCeEEEEcCCCCeeeEEEe
Q 022910          212 DATLRVWNPKSGENIHVIR  230 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~  230 (290)
                      .|.|.+-+....+....+.
T Consensus       237 ~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  237 TGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CCcEEEEecchhhhhhccC
Confidence            9999998877666554444

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.67  E-value=0.61  Score=44.72  Aligned_cols=159  Identities=17%  Similarity=0.256  Sum_probs=94.7

Q ss_pred             ccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEE--------cCCCCEEEEeeCCCeEEEE
Q 022910          106 HKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW--------HPRGHIVLAGSEDSTVWMW  176 (290)
Q Consensus       106 ~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~--------~~~~~~l~~~~~dg~i~i~  176 (290)
                      |...-..+-+.|. ++.-+  +-|+.+.+|+.+++.....+.+-...|..+..        -|.-+++++...--.|.++
T Consensus        77 ~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il  154 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL  154 (1311)
T ss_pred             CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence            3333344555554 33333  34789999999997777776665555655543        2223344444444566666


Q ss_pred             ECCccc---------EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEE--EcCCCC---e-e-------------eEE
Q 022910          177 NADRAA---------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV--WNPKSG---E-N-------------IHV  228 (290)
Q Consensus       177 d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--~d~~~~---~-~-------------~~~  228 (290)
                      -+.-..         ...++...+..|.++....+|+.|++|- ||.|+-  |....+   + +             +..
T Consensus       155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs  233 (1311)
T KOG1900|consen  155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS  233 (1311)
T ss_pred             EEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhh
Confidence            443211         0122333466789999888888777765 554432  111111   0 0             011


Q ss_pred             EeCCC-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          229 IRGHP-YHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       229 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      +...+ .+..+|..+........|++-+..|+|.+|++..
T Consensus       234 ~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  234 LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            11111 3567899999998888999999999999999976

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.62  E-value=1.2  Score=42.83  Aligned_cols=34  Identities=15%  Similarity=0.152  Sum_probs=27.3

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW   99 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~   99 (290)
                      .....++|.| ...++|.++..|.|++|-...-+.
T Consensus        36 ~~~~~~afD~-~q~llai~t~tg~i~~yg~~~ve~   69 (993)
T KOG1983|consen   36 STPSALAFDP-TQGLLAIGTRTGAIKIYGQPGVEF   69 (993)
T ss_pred             CCCcceeecc-ccceEEEEEecccEEEecccceEE
Confidence            3556788999 788999999999999998654433

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=94.59  E-value=2.2  Score=35.31  Aligned_cols=105  Identities=12%  Similarity=0.212  Sum_probs=52.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEcCCCCceE---EEEecCCCCE--EEEEEcCCCCEEEEeeC-----CCeEEEEECCccc
Q 022910          118 DGQLLASGGLD-----GLVQIWDPSSGNLK---CTLEGPGGGV--EWVSWHPRGHIVLAGSE-----DSTVWMWNADRAA  182 (290)
Q Consensus       118 ~~~~l~~~~~d-----g~i~i~d~~~~~~~---~~~~~~~~~i--~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~  182 (290)
                      ++..++.|+.+     ..+..||+.+.+..   ..+.....+.  .+++.. ++++++.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            55566666653     35667777665531   1221111111  122222 5666666664     2358889988765


Q ss_pred             EEEe--eecCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEcCCCCe
Q 022910          183 YLNM--FSGHGSSVTCGDFTPDGKTICTGSDDA----TLRVWNPKSGE  224 (290)
Q Consensus       183 ~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~  224 (290)
                      -...  +... ......+...++++++.|+.++    .+.+||+.+.+
T Consensus       151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            3322  2111 1111122223566777777654    35688887653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=94.53  E-value=1.6  Score=35.26  Aligned_cols=116  Identities=13%  Similarity=0.210  Sum_probs=72.1

Q ss_pred             CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe------CCCeEEEEcCCCCeeeEEEeCC--CCcccCeEEE
Q 022910          171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS------DDATLRVWNPKSGENIHVIRGH--PYHTEGLTCL  242 (290)
Q Consensus       171 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~  242 (290)
                      ..|++||..+.+-...-.+..+.|+.|.|..+.++++.|.      ....+..||+.+.. ...+...  ..-..+++.+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence            4599999988876666666778899999986666666654      35578889987653 3334331  1234678887


Q ss_pred             EEcC-CC-CEEEEEe-C--CCcEEEEEcCCCcEEEE-EccCCCcEEEEEEe
Q 022910          243 TISA-DS-TLALSGS-K--DGSVHMVNITTGKVVSS-LVSHTDSIECIGFS  287 (290)
Q Consensus       243 ~~~~-~~-~~l~~~~-~--dg~i~~wd~~~~~~~~~-~~~~~~~v~~i~~s  287 (290)
                      .+.. ++ ++.++|. .  +..|..||=.+...+.. .......|+++.+-
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~  145 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL  145 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence            7743 33 3444444 2  33577777555555544 23334566666553

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.52  E-value=0.27  Score=41.72  Aligned_cols=161  Identities=17%  Similarity=0.161  Sum_probs=96.5

Q ss_pred             ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE-E-ecCCC----CEE-EEEEcCCCCEEEEeeCCCeEEEE
Q 022910          104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT-L-EGPGG----GVE-WVSWHPRGHIVLAGSEDSTVWMW  176 (290)
Q Consensus       104 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~-~~~~~----~i~-~i~~~~~~~~l~~~~~dg~i~i~  176 (290)
                      ......+..+-..|+++.++.-+. ..+.++++.+...... + ....+    .|+ ++..-..|..+++++.||.|.-|
T Consensus       217 ~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW  295 (733)
T COG4590         217 SVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW  295 (733)
T ss_pred             CCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence            334456777888999998877665 6788888876432211 1 11111    111 11112246678888889988877


Q ss_pred             -ECCcc-----cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCE
Q 022910          177 -NADRA-----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL  250 (290)
Q Consensus       177 -d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (290)
                       |.+..     ..++.++-....+..+.-..+.+-+++-+..|++.++.....+.+. +..   .-..+.-+++||.+.+
T Consensus       296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~---~~~~~~~~~~Sp~~~~  371 (733)
T COG4590         296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FER---AYQAPQLVAMSPNQAY  371 (733)
T ss_pred             eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhh---hhcCcceeeeCcccch
Confidence             44432     1233333334455544333345667888888998888654443322 221   2235677899999999


Q ss_pred             EEEEeCCCcEEEEEcCCCcE
Q 022910          251 ALSGSKDGSVHMVNITTGKV  270 (290)
Q Consensus       251 l~~~~~dg~i~~wd~~~~~~  270 (290)
                      |++- ..|.|+++.+.+..+
T Consensus       372 Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         372 LLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             heee-cCCceEEEEecCCCC
Confidence            8765 457899998876543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.48  E-value=0.079  Score=48.48  Aligned_cols=120  Identities=17%  Similarity=0.170  Sum_probs=73.8

Q ss_pred             CcCEEEEEECCC--CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEE-----------ECCCCCEEEEEeCCCc
Q 022910           64 SDEVYSVACSPT--DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA-----------FSMDGQLLASGGLDGL  130 (290)
Q Consensus        64 ~~~v~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~l~~~~~dg~  130 (290)
                      ...+.-+.|.|.  ...++..+-.++.+++..+.+... ..+.+|...+..++           .+|||..|+.++.||.
T Consensus       180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~  258 (1283)
T KOG1916|consen  180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS  258 (1283)
T ss_pred             CCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence            334455556552  446777788888988887765332 33444666555444           5899999999999999


Q ss_pred             EEEEcCC-CC----ceEEEEecCC-CCEEEEEEcCCC---------CEEEEee-CCCeEEEEECCcccEE
Q 022910          131 VQIWDPS-SG----NLKCTLEGPG-GGVEWVSWHPRG---------HIVLAGS-EDSTVWMWNADRAAYL  184 (290)
Q Consensus       131 i~i~d~~-~~----~~~~~~~~~~-~~i~~i~~~~~~---------~~l~~~~-~dg~i~i~d~~~~~~~  184 (290)
                      +++|.+- ++    .++...+.|. .+-.|..++.+.         .++++++ .+..+++|.....+++
T Consensus       259 v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  259 VGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            9988763 22    3444556565 333333344322         2344444 3556999987766665

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=94.48  E-value=1.9  Score=34.11  Aligned_cols=69  Identities=9%  Similarity=0.208  Sum_probs=44.8

Q ss_pred             CCCeEEEEEcC-------CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEE----EcCCCCEEEEEeCCCc
Q 022910          191 GSSVTCGDFTP-------DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT----ISADSTLALSGSKDGS  259 (290)
Q Consensus       191 ~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~~~dg~  259 (290)
                      ...|+||+--.       .-..|+.|+..|.|+|.|.........+...   .-++ .+.    |..-.-.|++++.||.
T Consensus       176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lp---svPv-~i~~~G~~devdyRI~Va~Rdg~  251 (257)
T PF14779_consen  176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLP---SVPV-FISVSGQYDEVDYRIVVACRDGK  251 (257)
T ss_pred             CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecC---CCce-EEEEEeeeeccceEEEEEeCCCE
Confidence            44677776543       1257999999999999999888777666642   2222 222    2211235677788998


Q ss_pred             EEEE
Q 022910          260 VHMV  263 (290)
Q Consensus       260 i~~w  263 (290)
                      |++.
T Consensus       252 iy~i  255 (257)
T PF14779_consen  252 IYTI  255 (257)
T ss_pred             EEEE
Confidence            8764

>PLN02153 epithiospecifier protein

Probab=94.43  E-value=2.6  Score=35.29  Aligned_cols=143  Identities=13%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             CCcEEEEecCC-----CcEEEEEccCCeeeee--ecc---ccCC-EEEEEECCCCCEEEEEeCC-----------CcEEE
Q 022910           76 DATLVATGGGD-----DKGFFWRINQGDWASE--IQG---HKDS-VSSLAFSMDGQLLASGGLD-----------GLVQI  133 (290)
Q Consensus        76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~--~~~---~~~~-i~~~~~~~~~~~l~~~~~d-----------g~i~i  133 (290)
                      ++.+++.|+.+     ..+.+||+.+.+....  +..   .... -.+++. -+++.++.|+.+           ..+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence            45677777653     2577888877654432  210   1111 122222 355666666643           24778


Q ss_pred             EcCCCCceEEEEec-----CCCCEEEEEEcCCCCEEEEeeCC-------------CeEEEEECCcccEEEeee-----cC
Q 022910          134 WDPSSGNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSED-------------STVWMWNADRAAYLNMFS-----GH  190 (290)
Q Consensus       134 ~d~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~-----~~  190 (290)
                      ||..+.+-...-..     .........+  ++++++.++.+             ..+.+||+.+.+-...-.     ..
T Consensus       164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~  241 (341)
T PLN02153        164 YNIADGKWVQLPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA  241 (341)
T ss_pred             EECCCCeEeeCCCCCCCCCCCCcceEEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence            88877654321110     1111112222  55666655431             458889988765443211     01


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC--------------CeEEEEcCCCC
Q 022910          191 GSSVTCGDFTPDGKTICTGSDD--------------ATLRVWNPKSG  223 (290)
Q Consensus       191 ~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~  223 (290)
                      .....++.+  ++.+++.|+..              ..|..||+.+.
T Consensus       242 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~  286 (341)
T PLN02153        242 RSVFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL  286 (341)
T ss_pred             cceeeeEEE--CCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence            111122222  46667777642              25778887654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.42  E-value=0.45  Score=42.71  Aligned_cols=76  Identities=17%  Similarity=0.216  Sum_probs=46.6

Q ss_pred             CCCCEEEEEeCCCeEEEEcCCC----CeeeEEEe-----------CC--------CCcccCeEEEEEcC----CCCEEEE
Q 022910          201 PDGKTICTGSDDATLRVWNPKS----GENIHVIR-----------GH--------PYHTEGLTCLTISA----DSTLALS  253 (290)
Q Consensus       201 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~-----------~~--------~~~~~~v~~~~~~~----~~~~l~~  253 (290)
                      ++...++++..||.+.......    +.......           +.        ......+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4666788888899888877654    21111111           00        01123456666666    6789999


Q ss_pred             EeCCCcEEEEEcCCCcEEEEEcc
Q 022910          254 GSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       254 ~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      -+.|+++|+||+.+++++.++..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEET
T ss_pred             EeCCCeEEEEECCCCeEEEEecc
Confidence            99999999999999999877643

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.42  E-value=1.7  Score=37.91  Aligned_cols=81  Identities=12%  Similarity=0.117  Sum_probs=51.5

Q ss_pred             CEEEEEEcCCCCEEEEeeCCCeEEEEEC---------CcccEEEee----------e-cCCCCeEEEEEcCCC---CEEE
Q 022910          151 GVEWVSWHPRGHIVLAGSEDSTVWMWNA---------DRAAYLNMF----------S-GHGSSVTCGDFTPDG---KTIC  207 (290)
Q Consensus       151 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~----------~-~~~~~i~~~~~~~~~---~~l~  207 (290)
                      .|..+..++.|..++.++.+|.+.++=.         +.++..-..          . ...-.+...+|+|+.   ..|+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            3666777888888888888886655431         122211111          1 112245677899964   6778


Q ss_pred             EEeCCCeEEEEcCCCCeeeEEEeC
Q 022910          208 TGSDDATLRVWNPKSGENIHVIRG  231 (290)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~  231 (290)
                      .-+.|..||+|++.....+....+
T Consensus       185 iL~sdnviRiy~lS~~telylqpg  208 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELYLQPG  208 (741)
T ss_pred             EEecCcEEEEEecCCcchhhccCC
Confidence            888899999999987665544443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.36  E-value=1.6  Score=36.32  Aligned_cols=106  Identities=12%  Similarity=0.210  Sum_probs=56.9

Q ss_pred             CEEEEEEcCCCCEEEEeeCCCeEEEEECCccc--EEEee----ecCCCCeEEEEEcCC---CCEEEEEeC-C--------
Q 022910          151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMF----SGHGSSVTCGDFTPD---GKTICTGSD-D--------  212 (290)
Q Consensus       151 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~----~~~~~~i~~~~~~~~---~~~l~~~~~-d--------  212 (290)
                      ..+.|+|.|++++|++ ...|.|++++.....  .+..+    ......+..++++|+   ..+|++... .        
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            3678999999877665 558999999933222  22222    224457899999994   344444333 1        


Q ss_pred             CeEEEEcCCCC--e---e---eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 022910          213 ATLRVWNPKSG--E---N---IHVIRGHPYHTEGLTCLTISADSTLALSGSKD  257 (290)
Q Consensus       213 g~i~i~d~~~~--~---~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  257 (290)
                      ..|.-|....+  .   .   +..+............|.|.|+|.++++.+..
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence            13444444332  1   1   11122211133456679999999777666543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.29  E-value=2.7  Score=34.97  Aligned_cols=107  Identities=15%  Similarity=0.211  Sum_probs=65.7

Q ss_pred             CCCEEEEEEcCCCCEEEEeeCCCe------EEEEECCcc----cEE-----EeeecCCC--------CeEEEEEcCCCCE
Q 022910          149 GGGVEWVSWHPRGHIVLAGSEDST------VWMWNADRA----AYL-----NMFSGHGS--------SVTCGDFTPDGKT  205 (290)
Q Consensus       149 ~~~i~~i~~~~~~~~l~~~~~dg~------i~i~d~~~~----~~~-----~~~~~~~~--------~i~~~~~~~~~~~  205 (290)
                      -+.+..+.+.+.+..+++.+.+|.      ++.+.+...    ..+     ..+....+        ..-+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356788899866666666666676      666655431    111     11111111        3447888677777


Q ss_pred             EEEEeCC------CeEEEEcCCCCeeeEEEeCC------------CCcccCeEEEEEcCCCCEEEEEeC
Q 022910          206 ICTGSDD------ATLRVWNPKSGENIHVIRGH------------PYHTEGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       206 l~~~~~d------g~i~i~d~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~l~~~~~  256 (290)
                      +++.=.+      ..|+.++.. ++....+...            ...+...-+|+++|+|+.|+++..
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            7776666      789999976 6554444211            124567889999999997666543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.20  E-value=0.47  Score=35.35  Aligned_cols=31  Identities=19%  Similarity=0.460  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCC------CEEEEEeCCCeEEEEcCCC
Q 022910          192 SSVTCGDFTPDG------KTICTGSDDATLRVWNPKS  222 (290)
Q Consensus       192 ~~i~~~~~~~~~------~~l~~~~~dg~i~i~d~~~  222 (290)
                      ..+..++|||.|      .+|++.+.+|.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999943      4678889999999997654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=93.97  E-value=1.3  Score=34.87  Aligned_cols=141  Identities=16%  Similarity=0.269  Sum_probs=76.7

Q ss_pred             EEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC---CCcEEEEcCCC----CceEE---EEecCCCCEEEEEEc
Q 022910           89 GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSS----GNLKC---TLEGPGGGVEWVSWH  158 (290)
Q Consensus        89 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~----~~~~~---~~~~~~~~i~~i~~~  158 (290)
                      -.+||+.+++....--...--+.+-.+.++|++|.+|+.   ...+++++...    .....   .+. ....-.....-
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L  126 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL  126 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence            457888876543321112222333457789999998875   23577777544    11110   011 11223334445


Q ss_pred             CCCCEEEEeeCCCe-EEEEECCcc--cEEE--eee-----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEE
Q 022910          159 PRGHIVLAGSEDST-VWMWNADRA--AYLN--MFS-----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV  228 (290)
Q Consensus       159 ~~~~~l~~~~~dg~-i~i~d~~~~--~~~~--~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  228 (290)
                      |+|+.|+.|+.... ..+|.-+..  ....  .+.     ....---.+...|+|++|+.+..++  .|||..+++.++.
T Consensus       127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~  204 (243)
T PF07250_consen  127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT  204 (243)
T ss_pred             CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence            68999999887643 444543211  1111  111     0111223566789999998887654  4678888776666


Q ss_pred             EeCC
Q 022910          229 IRGH  232 (290)
Q Consensus       229 ~~~~  232 (290)
                      +...
T Consensus       205 lP~l  208 (243)
T PF07250_consen  205 LPDL  208 (243)
T ss_pred             CCCC
Confidence            6543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.85  E-value=5.9  Score=37.30  Aligned_cols=140  Identities=14%  Similarity=0.205  Sum_probs=81.0

Q ss_pred             cCCCCEEEEEEc---C----CCCEEEEeeCCCeEEEEECCcc---------------cEEEeee---cCCCCeEEEEEcC
Q 022910          147 GPGGGVEWVSWH---P----RGHIVLAGSEDSTVWMWNADRA---------------AYLNMFS---GHGSSVTCGDFTP  201 (290)
Q Consensus       147 ~~~~~i~~i~~~---~----~~~~l~~~~~dg~i~i~d~~~~---------------~~~~~~~---~~~~~i~~~~~~~  201 (290)
                      ....+|..|+|.   .    ..++|++=. ...+.|+...-.               .++..+.   ..+.+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456678888887   2    223555544 355666661111               1222332   1345678899999


Q ss_pred             -CCCEEEEEeCCCeEEEEcCCCCee-----eEEEe---CC----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910          202 -DGKTICTGSDDATLRVWNPKSGEN-----IHVIR---GH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       202 -~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~---~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                       +.+.||+....|...||++.....     .....   +.    .........+.|.++...|++++. ..+.++|+.+.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence             557899999999999999921111     11111   10    011234557889888777777764 47889999877


Q ss_pred             cEEEEEc--cCCCcEEEEEEec
Q 022910          269 KVVSSLV--SHTDSIECIGFSR  288 (290)
Q Consensus       269 ~~~~~~~--~~~~~v~~i~~s~  288 (290)
                      .....+.  .....|..+.=+|
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~  256 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSP  256 (765)
T ss_pred             CccchhccCCChhheeeEEecC
Confidence            6533121  1234566655444

These proteins are found in fungi.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.72  E-value=1.3  Score=42.61  Aligned_cols=152  Identities=14%  Similarity=0.189  Sum_probs=93.3

Q ss_pred             EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEEC-C-------CCCEEEEEeCCCcEEEEcCCCC
Q 022910           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-M-------DGQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-~-------~~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      ..+-+-|.=++..+|  -|..+.+|+++++.....+.+....|..+..- |       .=+++++.+.--.|.++-+.-.
T Consensus        82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~  159 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD  159 (1311)
T ss_pred             eeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence            344555544444444  46889999999977777777666667666542 2       2234444444455666643211


Q ss_pred             ----ce-----EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEE--ECCcc---c-E----------------EEeee
Q 022910          140 ----NL-----KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW--NADRA---A-Y----------------LNMFS  188 (290)
Q Consensus       140 ----~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~--d~~~~---~-~----------------~~~~~  188 (290)
                          ..     ...+...+..|.|+....+|+.|++|-. |.|+-.  ....+   + +                +..+.
T Consensus       160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~  238 (1311)
T KOG1900|consen  160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP  238 (1311)
T ss_pred             cccCcccccccceeeecCCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence                11     1223334557899997778877666554 544322  11111   0 0                11222


Q ss_pred             -cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910          189 -GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (290)
Q Consensus       189 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  222 (290)
                       .+..+|..|.....-..+++-+..|+|++|++..
T Consensus       239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  239 GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence             4567999999988888999999999999999976

>PLN02193 nitrile-specifier protein

Probab=93.60  E-value=4.8  Score=35.44  Aligned_cols=144  Identities=12%  Similarity=0.142  Sum_probs=73.5

Q ss_pred             CCcEEEEecCC-----CcEEEEEccCCeeeeeecc----ccCCEEEEEECCCCCEEEEEeCC-----CcEEEEcCCCCce
Q 022910           76 DATLVATGGGD-----DKGFFWRINQGDWASEIQG----HKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNL  141 (290)
Q Consensus        76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  141 (290)
                      ++.+++.|+.+     ..+.+||+.+.+.......    ....-.++.. -+++.++.|+.+     ..+..||+.+.+.
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            45677777654     3578888887655432111    1111122222 255666666654     3467788777654


Q ss_pred             EEEEe-----cCCCCEEEEEEcCCCCEEEEeeCC----CeEEEEECCcccEEEeeec-----CCCCeEEEEEcCCCCEEE
Q 022910          142 KCTLE-----GPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYLNMFSG-----HGSSVTCGDFTPDGKTIC  207 (290)
Q Consensus       142 ~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~  207 (290)
                      ...-.     ........+.+  ++++++.++.+    ..+.+||+.+.+-...-..     ......++.+  ++++++
T Consensus       307 ~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv  382 (470)
T PLN02193        307 FHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVI  382 (470)
T ss_pred             EeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEE
Confidence            32111     01111112222  56777777655    4589999987754332211     1111222222  456677


Q ss_pred             EEeCC--------------CeEEEEcCCCCe
Q 022910          208 TGSDD--------------ATLRVWNPKSGE  224 (290)
Q Consensus       208 ~~~~d--------------g~i~i~d~~~~~  224 (290)
                      .|+..              ..+.+||+.+.+
T Consensus       383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~  413 (470)
T PLN02193        383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQ  413 (470)
T ss_pred             ECCccCCccccccCccceeccEEEEEcCcCE
Confidence            77643              247888887654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=93.25  E-value=3.8  Score=33.22  Aligned_cols=115  Identities=17%  Similarity=0.312  Sum_probs=72.2

Q ss_pred             CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe------CCCcEEEEcCCCCceEEEEec-----CCCCEEE
Q 022910           86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG------LDGLVQIWDPSSGNLKCTLEG-----PGGGVEW  154 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~  154 (290)
                      ...|++||..+.+....-.+-.+.|+.|.|..+.+.++.|.      ....+..||+.+.... .+..     -.+++..
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence            45699999998887776666778999999986666677664      3567888998876543 2222     2367888


Q ss_pred             EEEcC-CCC-EEEEee-C--CCeEEEEECCcccEEEe-eecCCCCeEEEEEcC
Q 022910          155 VSWHP-RGH-IVLAGS-E--DSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTP  201 (290)
Q Consensus       155 i~~~~-~~~-~l~~~~-~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~  201 (290)
                      +.+.. +.. ..+.|. .  ...|..||-.+...+.. .......|..+.+-|
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence            87743 333 443433 2  33577777655444433 222344555555543

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=93.16  E-value=2.1  Score=39.32  Aligned_cols=93  Identities=9%  Similarity=-0.009  Sum_probs=50.7

Q ss_pred             EEEEEcCCCCEEEEEeCCC-----eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 022910          195 TCGDFTPDGKTICTGSDDA-----TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (290)
Q Consensus       195 ~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  269 (290)
                      ..+.|-|+|..+++-..||     .|.++..+..+ -..+.........+..++|+-....++++ ..+.|.+|-.++..
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr-HGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh  327 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR-HGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH  327 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCCcc-cCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence            3478999999999876555     46666543211 11111111134456667777655555544 45588999876543


Q ss_pred             EEEEEccCCCcEEEEEEecC
Q 022910          270 VVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       270 ~~~~~~~~~~~v~~i~~s~d  289 (290)
                      -.-+..-.-..+.-+.|+|.
T Consensus       328 WYLK~e~~ip~~s~vkwhpe  347 (1243)
T COG5290         328 WYLKVERQIPGISYVKWHPE  347 (1243)
T ss_pred             EEEEEeecCCCcceeeeccc
Confidence            22222222234556666663

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.91  E-value=3.1  Score=36.31  Aligned_cols=80  Identities=14%  Similarity=0.110  Sum_probs=51.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEcCC---------CCeeeEEEeCCC--------CcccCeEEEEEcCCC---CEEE
Q 022910          193 SVTCGDFTPDGKTICTGSDDATLRVWNPK---------SGENIHVIRGHP--------YHTEGLTCLTISADS---TLAL  252 (290)
Q Consensus       193 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~--------~~~~~v~~~~~~~~~---~~l~  252 (290)
                      .|..+..++.|..++..+.+|.+.++=.+         .++....-+...        ...-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            46778889999999988889976655321         232211111000        012246678999964   5677


Q ss_pred             EEeCCCcEEEEEcCCCcEEE
Q 022910          253 SGSKDGSVHMVNITTGKVVS  272 (290)
Q Consensus       253 ~~~~dg~i~~wd~~~~~~~~  272 (290)
                      .-+.|..||+|++...+.+.
T Consensus       185 iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             EEecCcEEEEEecCCcchhh
Confidence            77889999999997655443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.89  E-value=1.3  Score=32.99  Aligned_cols=30  Identities=13%  Similarity=0.365  Sum_probs=25.1

Q ss_pred             CEEEEEEcCCC------CEEEEeeCCCeEEEEECCc
Q 022910          151 GVEWVSWHPRG------HIVLAGSEDSTVWMWNADR  180 (290)
Q Consensus       151 ~i~~i~~~~~~------~~l~~~~~dg~i~i~d~~~  180 (290)
                      .+..++|||.|      -+|++.+.+|.|.+|.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            69999999953      3899999999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=92.83  E-value=5.1  Score=33.57  Aligned_cols=53  Identities=21%  Similarity=0.266  Sum_probs=27.0

Q ss_pred             CCcEEEEecCC-----------CcEEEEEccCCeeeeeeccccCCEE--EEEECCCCCEEEEEeCC
Q 022910           76 DATLVATGGGD-----------DKGFFWRINQGDWASEIQGHKDSVS--SLAFSMDGQLLASGGLD  128 (290)
Q Consensus        76 ~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~d  128 (290)
                      ++.+.+.|+..           ..+..||..+.+.............  +....-+++..+.|+.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            55677777653           2477788877655443211111111  11112367777777654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.80  E-value=6.1  Score=34.42  Aligned_cols=113  Identities=9%  Similarity=0.126  Sum_probs=63.8

Q ss_pred             EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE--EEeee-----cCCCCeEEEEEcCCC------CEEEEEe-
Q 022910          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMFS-----GHGSSVTCGDFTPDG------KTICTGS-  210 (290)
Q Consensus       145 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~-----~~~~~i~~~~~~~~~------~~l~~~~-  210 (290)
                      +...-...+.|+|.|++++|++--..|.|++++..++..  +..+.     .....+..|+++|+-      .+|++.. 
T Consensus        25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt  104 (454)
T TIGR03606        25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT  104 (454)
T ss_pred             EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence            333344578999999998777665569999998655432  21111     135678899999873      3455442 


Q ss_pred             ---------CCCeEEEEcCCCC--e---eeEEEeCCCC-cccCeEEEEEcCCCCEEEEEeCC
Q 022910          211 ---------DDATLRVWNPKSG--E---NIHVIRGHPY-HTEGLTCLTISADSTLALSGSKD  257 (290)
Q Consensus       211 ---------~dg~i~i~d~~~~--~---~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d  257 (290)
                               ....|.-|.+...  .   ....+...+. ....-..|.|.|||.++++.+..
T Consensus       105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                     1234544544311  1   1122222110 11234578899999877665543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.55  E-value=0.82  Score=41.06  Aligned_cols=72  Identities=18%  Similarity=0.256  Sum_probs=45.9

Q ss_pred             CCCCEEEEeeCCCeEEEEECCc----ccEEEe-----------ee-----------cCCCCeEEEEEcC----CCCEEEE
Q 022910          159 PRGHIVLAGSEDSTVWMWNADR----AAYLNM-----------FS-----------GHGSSVTCGDFTP----DGKTICT  208 (290)
Q Consensus       159 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~-----------~~-----------~~~~~i~~~~~~~----~~~~l~~  208 (290)
                      ++...++.+..+|.+.......    +.....           +.           ........+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3667888888999888887664    111110           00           0123456666766    6789999


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEe
Q 022910          209 GSDDATLRVWNPKSGENIHVIR  230 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~  230 (290)
                      .+.|++||+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999966654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.51  E-value=5  Score=32.70  Aligned_cols=157  Identities=7%  Similarity=0.049  Sum_probs=88.2

Q ss_pred             CcEEEEcCCCCceEEEEecC------CCCEEEEEEcCCC-----CEEEEee-CCCeEEEEECCcccEEEeeecC------
Q 022910          129 GLVQIWDPSSGNLKCTLEGP------GGGVEWVSWHPRG-----HIVLAGS-EDSTVWMWNADRAAYLNMFSGH------  190 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~-----~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~------  190 (290)
                      -.|.+||+.+++.++++.-+      .+.+..+.+....     .+++.+. ..+-|.++|+.+++.-+....+      
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            36888999999888776532      3467777776632     2444443 3467999999988654443221      


Q ss_pred             -------------CCCeEEEEEcC---CCCEEEEEeCCC-eEEEEc---CCCCe---------eeEEEeCCCCcccCeEE
Q 022910          191 -------------GSSVTCGDFTP---DGKTICTGSDDA-TLRVWN---PKSGE---------NIHVIRGHPYHTEGLTC  241 (290)
Q Consensus       191 -------------~~~i~~~~~~~---~~~~l~~~~~dg-~i~i~d---~~~~~---------~~~~~~~~~~~~~~v~~  241 (290)
                                   ...+..++.+|   ++++|+-+...+ .++-..   +++..         .+..+..   .......
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g  190 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG  190 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence                         22366677765   556666555443 222221   11111         1122211   1245677


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCC---cEEEEE-ccC--CCcEEEEEEec
Q 022910          242 LTISADSTLALSGSKDGSVHMVNITTG---KVVSSL-VSH--TDSIECIGFSR  288 (290)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~i~~wd~~~~---~~~~~~-~~~--~~~v~~i~~s~  288 (290)
                      ++++++|.++++--..+.|..|+..+.   +.+..+ +..  -..+.++++.+
T Consensus       191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~  243 (287)
T PF03022_consen  191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDP  243 (287)
T ss_dssp             EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T
T ss_pred             EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeecc
Confidence            889999999999999999999998761   112222 221  24667777766

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=92.27  E-value=11  Score=36.03  Aligned_cols=131  Identities=18%  Similarity=0.236  Sum_probs=74.8

Q ss_pred             CCcEEEEcCCC-CceEEEEe--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec--CCCCeEEEEEcCC
Q 022910          128 DGLVQIWDPSS-GNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPD  202 (290)
Q Consensus       128 dg~i~i~d~~~-~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~  202 (290)
                      +|.++.|++-. ++.+.-+.  .-.+++.  +..|...++++|- ...+++|++-..+++++...  ....|+.+++  .
T Consensus       911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~  985 (1205)
T KOG1898|consen  911 SGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--Y  985 (1205)
T ss_pred             CCceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEee--c
Confidence            46677776533 33222221  1223443  4456555555544 47899999988776655432  3456777776  4


Q ss_pred             CCEEEEEeCCCeEEE--EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          203 GKTICTGSDDATLRV--WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       203 ~~~l~~~~~dg~i~i--~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      +..+++|..--.+.+  |+... +.+..+...+ ....|+++.+- |-..+|.+..=|.+.+..+.
T Consensus       986 ~~RI~VgD~qeSV~~~~y~~~~-n~l~~fadD~-~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen  986 GARIVVGDIQESVHFVRYRRED-NQLIVFADDP-VPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             ceEEEEeeccceEEEEEEecCC-CeEEEEeCCC-ccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence            667777765555544  44433 3344554433 34456666654 45567777777888777654

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=92.22  E-value=7.1  Score=33.80  Aligned_cols=32  Identities=13%  Similarity=0.286  Sum_probs=25.2

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          236 TEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       236 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      ...|.+++..+..+.|++.+.+|.|.+|++..
T Consensus       189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            34489999999889999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=92.21  E-value=6.6  Score=33.41  Aligned_cols=53  Identities=15%  Similarity=0.258  Sum_probs=26.2

Q ss_pred             CCcEEEEecCCC-----------cEEEEEccCCeeeeeeccccCCE--EEEEECCCCCEEEEEeCC
Q 022910           76 DATLVATGGGDD-----------KGFFWRINQGDWASEIQGHKDSV--SSLAFSMDGQLLASGGLD  128 (290)
Q Consensus        76 ~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d  128 (290)
                      ++.+++.|+...           .+..||..+.+....-.......  .+....-+++.++.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            456777776532           47778877765444221101111  111221366777777653

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.05  E-value=5.7  Score=32.36  Aligned_cols=189  Identities=14%  Similarity=0.167  Sum_probs=103.8

Q ss_pred             CEEEEEECCCCCcEEEE--ecC----------CCcEEEEEccCCeeeeeecc------ccCCEEEEEECCCC-----CEE
Q 022910           66 EVYSVACSPTDATLVAT--GGG----------DDKGFFWRINQGDWASEIQG------HKDSVSSLAFSMDG-----QLL  122 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~--~~~----------dg~i~iw~~~~~~~~~~~~~------~~~~i~~~~~~~~~-----~~l  122 (290)
                      .|..+...+ .+.+.+.  |.-          .-+|.+||+.+++.++++.-      ..+.+..+.+....     .++
T Consensus         2 sV~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a   80 (287)
T PF03022_consen    2 SVQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA   80 (287)
T ss_dssp             -EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred             cccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence            366677766 4444333  210          13799999999998877642      24567788886522     243


Q ss_pred             EEE-eCCCcEEEEcCCCCceEEEEecC-------------------CCCEEEEEEcC---CCCEEEEeeCCC-eEEEEEC
Q 022910          123 ASG-GLDGLVQIWDPSSGNLKCTLEGP-------------------GGGVEWVSWHP---RGHIVLAGSEDS-TVWMWNA  178 (290)
Q Consensus       123 ~~~-~~dg~i~i~d~~~~~~~~~~~~~-------------------~~~i~~i~~~~---~~~~l~~~~~dg-~i~i~d~  178 (290)
                      +.+ +..+-|.|+|+.+++..+.+..+                   ...+..++.+|   +++.|+...-.+ .++-...
T Consensus        81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T  160 (287)
T PF03022_consen   81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPT  160 (287)
T ss_dssp             EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEH
T ss_pred             EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEH
Confidence            333 33467999999988655443221                   12356666655   555666555433 2332221


Q ss_pred             ---Cccc---------EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe---eeEEEeCCCCcccCeEEEE
Q 022910          179 ---DRAA---------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE---NIHVIRGHPYHTEGLTCLT  243 (290)
Q Consensus       179 ---~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~v~~~~  243 (290)
                         +...         .+..+-........++++++|.++++--..+.|..|+..+.-   ....+......-..+..+.
T Consensus       161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~  240 (287)
T PF03022_consen  161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK  240 (287)
T ss_dssp             HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred             HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Confidence               1111         112221122466778899999999999999999999988621   2233332222346788999


Q ss_pred             EcC--CCCEEEEEe
Q 022910          244 ISA--DSTLALSGS  255 (290)
Q Consensus       244 ~~~--~~~~l~~~~  255 (290)
                      +.+  +|.+.+...
T Consensus       241 i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  241 IDPEGDGYLWVLSN  254 (287)
T ss_dssp             E-T--TS-EEEEE-
T ss_pred             eccccCceEEEEEC
Confidence            998  776666553

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.91  E-value=0.94  Score=38.64  Aligned_cols=167  Identities=13%  Similarity=0.121  Sum_probs=97.7

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee-e-ccccC----CEE-EEEECCCCCEEEEEeC
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-I-QGHKD----SVS-SLAFSMDGQLLASGGL  127 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~-~~~~~----~i~-~~~~~~~~~~l~~~~~  127 (290)
                      +.++.+..-...|..+-..| +++.++.-+. .++.++++.+.....+ + ....+    .|+ .+.....|..+++++.
T Consensus       211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~  288 (733)
T COG4590         211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE  288 (733)
T ss_pred             hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence            34444666677888889999 6665555443 6788888876432211 1 11011    111 1222335566888888


Q ss_pred             CCcEEEE-cCCCC-c----eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC
Q 022910          128 DGLVQIW-DPSSG-N----LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP  201 (290)
Q Consensus       128 dg~i~i~-d~~~~-~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  201 (290)
                      ||.|.-| |.+.+ .    .++.++-...++..+.-..+.+-+++-+.+|++.++.....+.+..-. .-..+.-+++||
T Consensus       289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp  367 (733)
T COG4590         289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSP  367 (733)
T ss_pred             CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCc
Confidence            9988877 44332 2    122233233344444433345567777888888888765554433222 223567788999


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCee
Q 022910          202 DGKTICTGSDDATLRVWNPKSGEN  225 (290)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~  225 (290)
                      .+.++++- ..|.|+++-+.+..+
T Consensus       368 ~~~~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         368 NQAYLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             ccchheee-cCCceEEEEecCCCC
Confidence            99988875 457799998876544

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.81  E-value=12  Score=35.40  Aligned_cols=158  Identities=13%  Similarity=0.098  Sum_probs=92.6

Q ss_pred             cccCCEEEEEEC---C----CCCEEEEEeCCCcEEEEcCC------CC---------ceEEEEec---CCCCEEEEEEcC
Q 022910          105 GHKDSVSSLAFS---M----DGQLLASGGLDGLVQIWDPS------SG---------NLKCTLEG---PGGGVEWVSWHP  159 (290)
Q Consensus       105 ~~~~~i~~~~~~---~----~~~~l~~~~~dg~i~i~d~~------~~---------~~~~~~~~---~~~~i~~i~~~~  159 (290)
                      ....+|..|+|.   .    ..++|++-. ...+.|+...      ..         .++..+..   .+.+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            356789999997   2    223555544 4567777621      11         22333331   334678899998


Q ss_pred             -CCCEEEEeeCCCeEEEEECCccc-----EEEeeecC----------CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910          160 -RGHIVLAGSEDSTVWMWNADRAA-----YLNMFSGH----------GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (290)
Q Consensus       160 -~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  223 (290)
                       +...||+....|...||++....     ........          ...-..+.|.++...|++++. ..+.++|+.+.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence             45699999999999999992211     11111111          123347889888778888764 56889999877


Q ss_pred             eeeEEEeCCCCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCC
Q 022910          224 ENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~  267 (290)
                      .....+... .....|..+.-+|.  ...++..  ...|...++..
T Consensus       235 ~~~~~l~~~-~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  235 WQTEYLVTA-KTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS  277 (765)
T ss_pred             CccchhccC-CChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence            653322221 14456777777765  2222222  23566666654

These proteins are found in fungi.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.71  E-value=1.2  Score=23.87  Aligned_cols=32  Identities=16%  Similarity=0.149  Sum_probs=24.5

Q ss_pred             CCCCcEEEEecCCCcEEEEEccCCeeeeeecc
Q 022910           74 PTDATLVATGGGDDKGFFWRINQGDWASEIQG  105 (290)
Q Consensus        74 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  105 (290)
                      |+++.++++...++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            33556676777789999999998888777764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.29  E-value=8.3  Score=32.69  Aligned_cols=195  Identities=10%  Similarity=0.137  Sum_probs=108.7

Q ss_pred             CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEEC----CCCCE--EEEEe-CC---CcEEEEcCCCC-ceEEE
Q 022910           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS----MDGQL--LASGG-LD---GLVQIWDPSSG-NLKCT  144 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~--l~~~~-~d---g~i~i~d~~~~-~~~~~  144 (290)
                      ...+++...+.+-+.+||+... .+..+.  .+.+..+..-    -.++.  |+.++ .+   .+|++|.+... ..+..
T Consensus        67 ~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             ccceEEEEeCCCCEEEEcCCCc-EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            4457777788899999999754 444443  2233333321    13442  44444 22   46999977532 22333


Q ss_pred             Eec-------CCCCEEEEEEc--C-CCC-EEEEeeCCCeEEEEECC---cc----cEEEeeecCCCCeEEEEEcCCCCEE
Q 022910          145 LEG-------PGGGVEWVSWH--P-RGH-IVLAGSEDSTVWMWNAD---RA----AYLNMFSGHGSSVTCGDFTPDGKTI  206 (290)
Q Consensus       145 ~~~-------~~~~i~~i~~~--~-~~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~i~~~~~~~~~~~l  206 (290)
                      +..       ....+..+|+.  + ++. ++++...+|.+..|-+.   .+    +.++.+.. .+.+..+.......+|
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~L  222 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRL  222 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEE
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCE
Confidence            221       11235666663  3 344 66677888988888774   22    45677764 4588999999888899


Q ss_pred             EEEeCCCeEEEEcCCCC--eeeEEE--eCCCCcccCeEEEEEcC--CC-CEEEEE-eCCCcEEEEEcCC-CcEEEEE
Q 022910          207 CTGSDDATLRVWNPKSG--ENIHVI--RGHPYHTEGLTCLTISA--DS-TLALSG-SKDGSVHMVNITT-GKVVSSL  274 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~~~--~~~~~~--~~~~~~~~~v~~~~~~~--~~-~~l~~~-~~dg~i~~wd~~~-~~~~~~~  274 (290)
                      +.+-.+.-|.-|+....  .....+  .........+-.|++-.  ++ .||+++ -.+++..+|+... ...+..|
T Consensus       223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF  299 (381)
T ss_dssp             EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred             EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence            99999988888887522  211222  11112345677777643  33 345444 4477899999765 3445554

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=91.10  E-value=8.2  Score=32.31  Aligned_cols=53  Identities=21%  Similarity=0.228  Sum_probs=26.8

Q ss_pred             CCCEEEEEeCC-----------CcEEEEcCCCCceEEEEecCCCCEEE--EEEcCCCCEEEEeeCC
Q 022910          118 DGQLLASGGLD-----------GLVQIWDPSSGNLKCTLEGPGGGVEW--VSWHPRGHIVLAGSED  170 (290)
Q Consensus       118 ~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~i~~--i~~~~~~~~l~~~~~d  170 (290)
                      +++..+.|+..           ..+..||..+.+-...-.........  ....-++++.+.|+.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            56667777653           24777888776543321111111111  1112367777887754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=90.98  E-value=6.8  Score=31.15  Aligned_cols=69  Identities=9%  Similarity=0.104  Sum_probs=47.2

Q ss_pred             CCEEEEEEcCC-------CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEE---EcCCCCEEEEEeCCCeEEEE
Q 022910          150 GGVEWVSWHPR-------GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD---FTPDGKTICTGSDDATLRVW  218 (290)
Q Consensus       150 ~~i~~i~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~---~~~~~~~l~~~~~dg~i~i~  218 (290)
                      ..|+||+--+.       -..|+.|+.+|.|+|.|......+.++.-..-++.-.+   |..-.-.|++++.||.|++.
T Consensus       177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI  255 (257)
T ss_pred             ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence            46788765431       23799999999999999998888877775555542222   21123457788899988764

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=90.87  E-value=7.5  Score=36.42  Aligned_cols=138  Identities=15%  Similarity=0.196  Sum_probs=77.4

Q ss_pred             cCCCcEEEEEccCCeeeeeeccccCCEEEEEE-CCCCC-------EEEEEeCCCcEEEEcC----CCCceE-----EEEe
Q 022910           84 GGDDKGFFWRINQGDWASEIQGHKDSVSSLAF-SMDGQ-------LLASGGLDGLVQIWDP----SSGNLK-----CTLE  146 (290)
Q Consensus        84 ~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~-~~~~~-------~l~~~~~dg~i~i~d~----~~~~~~-----~~~~  146 (290)
                      +.|..+.+|++.++..-..+......|..++. -|..+       +++..+....+.++-+    .+++.-     ....
T Consensus        99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnTgl~vs  178 (1263)
T COG5308          99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNTGLVVS  178 (1263)
T ss_pred             EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEecceEEe
Confidence            35688999999976655544444444554443 23222       1111222333444432    222221     1122


Q ss_pred             cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc--------cE-------------E---EeeecCCCCeEEEEEcCC
Q 022910          147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--------AY-------------L---NMFSGHGSSVTCGDFTPD  202 (290)
Q Consensus       147 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~-------------~---~~~~~~~~~i~~~~~~~~  202 (290)
                      ..+-.|.|+.-+.+|+.+++|-.|  +.+|.+.-.        ++             +   ..+..++..|..++....
T Consensus       179 vqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqs  256 (1263)
T COG5308         179 VQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQS  256 (1263)
T ss_pred             ccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeeccc
Confidence            234568898888889988888877  566654211        00             0   111235567778888776


Q ss_pred             CCEEEEEeCCCeEEEEcCCCC
Q 022910          203 GKTICTGSDDATLRVWNPKSG  223 (290)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~  223 (290)
                      ...|.+-+....|+-|-+...
T Consensus       257 Rg~ly~Lr~kS~Vray~itkn  277 (1263)
T COG5308         257 RGLLYVLRKKSAVRAYSITKN  277 (1263)
T ss_pred             ccceeeecccceeeeEeeecc
Confidence            677777777777888766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	290
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-27
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-21
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-15
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-21
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-15
2h9l_A	329	Wdr5delta23 Length = 329		2e-21
2h9l_A	329	Wdr5delta23 Length = 329		2e-15
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-21
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-15
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-21
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-15
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-21
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-15
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-21
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-15
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-21
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-15
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-21
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-15
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-21
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-15
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-21
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-15
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-21
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-15
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-21
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-15
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-21
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-15
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-21
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		9e-16
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-21
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		7e-14
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-21
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		7e-14
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-20
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-10
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-18
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-16
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-16
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-16
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-14
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-16
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-16
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		5e-16
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-15
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		7e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-15
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-14
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		6e-14
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		9e-14
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-10
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		9e-14
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-10
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-13
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-13
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		9e-10
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-13
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-10
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-13
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-13
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-13
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-13
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-13
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		6e-13
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-11
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		4e-12
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-11
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-07
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-11
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-11
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-11
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-11
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-11
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-11
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		9e-09
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-11
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		7e-11
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-10
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		8e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-08
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-08
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-08
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-08
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		6e-08
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-07
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		5e-07
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		5e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-06
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		9e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		5e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		1e-05
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-05
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-05
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-05
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		1e-05
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		1e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-05
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		9e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 118/229 (51%), Gaps = 9/229 (3%)
Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
              +GHS  V+ VA SP D   +A+   D     W  N G     + GH  SV  +AFS 
Sbjct: 51  QTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP 108
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
           DGQ +AS   D  V++W+  +G L  TL G    V  V++ P G  + + S+D TV +WN
Sbjct: 109 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
            +    L   +GH SSV    F+PDG+TI + SDD T+++WN ++G+ +  + GH     
Sbjct: 168 RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 225
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286
           G   +  S D     S S D +V + N   G+++ +L  H+ S+  + F
Sbjct: 226 G---VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAF 270

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 43  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 219
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 220 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 264

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 39  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 98
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 99  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 155
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 183

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 41  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 217
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 262

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 37  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 97  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 153
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 181

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 36  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 95  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 212
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 213 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 32  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 91
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 92  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 148
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 176

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 22  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 78  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 162

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 22  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 78  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 162

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 19  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 195
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 75  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 131
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 159

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 15  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 74  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 191
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 192 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 11  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 71  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 127
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 155

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 20  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 79  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 196
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 197 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 241

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 16  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 76  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 132
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 160

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 25  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 201
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 81  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 137
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 165

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 24  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 83  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 200
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 201 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 245

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 20  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 80  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 136
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 164

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 19  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 195
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 75  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 131
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 159

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 25  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 201
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 81  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 137
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 165

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 18  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 77  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 194
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 195 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 14  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 74  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 130
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 158

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 25  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 201
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 81  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 137
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 165

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP    L A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSA-DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           LK TL G    V  V + P G  + A S D  + +W A    +    SGH   ++   ++
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 78  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TGK + +L +H+D +  + F+R
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNR 162

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 22  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D  + + + + GK + +   H +   CI
Sbjct: 199 SFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           L  TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 78  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TG  + +L +H+D +  + F+R
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNR 162

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+  V SV  SP +   +A+   D     W    G +   I GHK  +S +A+S D 
Sbjct: 22  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            LL S   D  ++IWD SSG    TL+G    V   +++P+ +++++GS D +V +W+  
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
               L     H   V+   F  DG  I + S D   R+W+  SG+ +  +         +
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
           + +  S +    L+ + D ++ + + + GK + +   H +   CI
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
           L  TL G    V  V + P G  + + S D  + +W A    +    SGH   ++   ++
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
            D   + + SDD TL++W+  SG+ +  ++GH  +   + C   +  S L +SGS D SV
Sbjct: 78  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSR 288
            + ++ TG  + +L +H+D +  + F+R
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNR 162

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 111/246 (45%), Gaps = 18/246 (7%)
Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
           +  SGH   V  V   P  + +V+    D     W    GD+   ++GH DSV  ++F  
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVS-ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
            G+LLAS   D  +++WD        T+ G    V  VS  P G  +++ S D T+ MW 
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
                 +  F+GH   V       DG  I + S+D T+RVW   + E    +R H +  E
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 238 GLTCLTISADSTLA-----------------LSGSKDGSVHMVNITTGKVVSSLVSHTDS 280
            ++    S+ S+++                 LSGS+D ++ M +++TG  + +LV H + 
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 281 IECIGF 286
           +  + F
Sbjct: 341 VRGVLF 346

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS 193
           W P     K  L G    V  V +HP   ++++ SED+T+ +W+ +   +     GH  S
Sbjct: 94  WIPRPPE-KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS 152
Query: 194 VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253
           V    F   GK + + S D T+++W+ +  E I  + GH ++   ++ ++I  +    +S
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN---VSSVSIMPNGDHIVS 209
Query: 254 GSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284
            S+D ++ M  + TG  V +   H + +  +
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 11/222 (4%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
           +  H   GH+    +V C       V +G  D     W I  G     + GH  +V  + 
Sbjct: 190 ECIHTLYGHTS---TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 246
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
           +  DG+ + SG  D +V++WDP +     TL+G    V   S    G  V++GS D+++ 
Sbjct: 247 Y--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIR 302
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234
           +W+ +    ++  +GH  S+T G    D   + +G+ D+T+++W+ K+G+ +  ++G   
Sbjct: 303 VWDVETGNCIHTLTGH-QSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS 276
           H   +TCL  + +    ++ S DG+V + ++ TG+ + +LV+
Sbjct: 361 HQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVT 400

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 13/244 (5%)
Query: 56  STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF 115
           S  +   H+D VY  AC   D   +A+ G D     ++   G+   +I+ H+D V   AF
Sbjct: 607 SRLVVRPHTDAVYH-ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 665
Query: 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW-HPRGHIVLA-GSEDSTV 173
           S D   +A+   D  V+IWD ++G L  T +     V    + +   H++LA GS D  +
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG---ENIHVIR 230
            +W+ ++    N   GH +SV    F+PD + + + S D TLR+W+ +S    ++I+V R
Sbjct: 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785
Query: 231 GH------PYHTEGLT-CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283
                   P   E +  C + SAD    +  +K+  +     T+G +      H  +I+ 
Sbjct: 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845
Query: 284 IGFS 287
             FS
Sbjct: 846 CDFS 849

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 13/244 (5%)
Query: 56  STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF 115
           S  +   H+D VY  AC   D   +A+ G D     ++   G+   +I+ H+D V   AF
Sbjct: 614 SRLVVRPHTDAVYH-ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 672
Query: 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW-HPRGHIVLA-GSEDSTV 173
           S D   +A+   D  V+IWD ++G L  T +     V    + +   H++LA GS D  +
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG---ENIHVIR 230
            +W+ ++    N   GH +SV    F+PD + + + S D TLR+W+ +S    ++I+V R
Sbjct: 733 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 792
Query: 231 GH------PYHTEGLT-CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283
                   P   E +  C + SAD    +  +K+  +     T+G +      H  +I+ 
Sbjct: 793 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 852
Query: 284 IGFS 287
             FS
Sbjct: 853 CDFS 856

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 11/223 (4%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-----NQGDWASEIQGHKDSVSSLA 114
             GH+  V  +A +P    ++ +   D     W++     N G     ++GH   VS + 
Sbjct: 34  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            S DGQ   SG  DG +++WD ++G       G    V  V++      +++GS D T+ 
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 175 MWNA-DRAAYLNMFSGHGSSVTCGDFTPDGKT--ICTGSDDATLRVWNPKSGENIHVIRG 231
           +WN      Y      H   V+C  F+P+     I +   D  ++VWN     N  +   
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTN 210
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274
           H  HT  L  +T+S D +L  SG KDG   + ++  GK + +L
Sbjct: 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 11/223 (4%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-----NQGDWASEIQGHKDSVSSLA 114
             GH+  V  +A +P    ++ +   D     W++     N G     ++GH   VS + 
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            S DGQ   SG  DG +++WD ++G       G    V  V++      +++GS D T+ 
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 175 MWNA-DRAAYLNMFSGHGSSVTCGDFTPDGKT--ICTGSDDATLRVWNPKSGENIHVIRG 231
           +WN      Y      H   V+C  F+P+     I +   D  ++VWN     N  +   
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTN 187
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274
           H  HT  L  +T+S D +L  SG KDG   + ++  GK + +L
Sbjct: 188 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 230

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 14/238 (5%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-----SEIQGHKDSVSSLA 114
              H+D V ++A    +A ++ +   D     W++ + D A       + GH   V  + 
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            S DGQ   SG  DG +++WD ++G       G    V  V++      +++ S D T+ 
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 175 MWNADRAAYLNMFSG---HGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGENIHVI 229
           +WN        +  G   H   V+C  F+P+    TI + S D T++VWN  + +    +
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL 557
Query: 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
            GH   T  ++ + +S D +L  SG KDG V + ++  GK + SL +++  I  + FS
Sbjct: 558 AGH---TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFS 611

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 17/231 (7%)
Query: 60  FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASE---------IQGHKD 108
            +GH   V S+AC  +P  AT V +   D     W  N    +SE         ++GH  
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
            VS +A S +G    S   D  +++W+  +G  +    G    V  V++ P    +++G 
Sbjct: 69  FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 169 EDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTP--DGKTICTGSDDATLRVWNPKSGEN 225
            D+ + +WN        +  G H   V+C  F+P  D   I +G  D  ++VW+  +G  
Sbjct: 129 RDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL 188
Query: 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS 276
           +  ++GH   T  +T +T+S D +L  S  KDG   + ++T G+ +S + +
Sbjct: 189 VTDLKGH---TNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA 236

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 15/137 (10%)
Query: 164 VLAGSEDSTVWMW--NADRAAYL-------NMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214
           V++ S D T+  W  N DR +             GH + V+    + +G    + S D +
Sbjct: 31  VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274
           LR+WN ++G+  +   GH   T+ +  +  S D+   +SG +D ++ + N+  G+ + +L
Sbjct: 91  LRLWNLQNGQCQYKFLGH---TKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTL 146
Query: 275 V--SHTDSIECIGFSRS 289
              +HTD + C+ FS S
Sbjct: 147 SRGAHTDWVSCVRFSPS 163

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 14/220 (6%)
Query: 70  VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129
           V C   D   + +G  D+    W  N  +    + GH  SV  L    D +++ +G  D 
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDS 193
Query: 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM--- 186
            V++WD ++G +  TL      V  + ++    +++  S+D ++ +W+      + +   
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
             GH ++V   DF  D K I + S D T++VWN  + E +  + GH     G+ CL    
Sbjct: 252 LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH---KRGIACLQYR- 305
Query: 247 DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286
              L +SGS D ++ + +I  G  +  L  H + + CI F
Sbjct: 306 -DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 194 VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253
           V C  +  D + I +G  D T+++W+  + E   ++ GH   T  + CL    D  + ++
Sbjct: 136 VYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGH---TGSVLCL--QYDERVIIT 188
Query: 254 GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
           GS D +V + ++ TG+++++L+ H +++  + F+
Sbjct: 189 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN 222

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 18/254 (7%)
Query: 51  EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
           + P++     S  SD      C   D   +ATG  D     W I        +QGH+  +
Sbjct: 109 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 168
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSE 169
            SL +   G  L SG  D  V+IWD  +G    TL     GV  V+  P  G  + AGS 
Sbjct: 169 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSL 227
Query: 170 DSTVWMWNADRAAYLNMF-------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           D  V +W+++    +          +GH  SV    FT DG+++ +GS D ++++WN ++
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 223 GENIHVIR---------GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS 273
             N    +          +  H + +  +  + +    LSGSKD  V   +  +G  +  
Sbjct: 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347
Query: 274 LVSHTDSIECIGFS 287
           L  H +S+  +  +
Sbjct: 348 LQGHRNSVISVAVA 361

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 22/201 (10%)
Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR 160
           + ++GH  SV +     +   + +G  D +++++D  +      L G  GGV W   +  
Sbjct: 115 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGV-WALKYAH 172
Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT--PDGKTICTGSDDATLRVW 218
           G I+++GS D TV +W+  +    ++F GH S+V C D     + K I TGS D TL VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 219 N-------PKSGEN------IHVIRGHPYHTEGL-----TCLTISADSTLALSGSKDGSV 260
                   P  GE        H    +PY    L     +  T+S    + +SGS D ++
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 292
Query: 261 HMVNITTGKVVSSLVSHTDSI 281
            + ++   K +  L  HTD I
Sbjct: 293 IVWDVAQMKCLYILSGHTDRI 313

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
           F  H D + S+A  PT   +++  G DD   K + W   + +WA E   +GH+  V  +A
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
           F+  D    ASG LD  V++W         TL  G   GV +V ++P      ++  S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
            T+ +W+    + +    GH S+V+   F P    I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 94/235 (40%), Gaps = 5/235 (2%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
           D    FS  SD V  +   PT+   V T     +   W          IQ  +  V +  
Sbjct: 4   DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
           F      +  G  D  +++++ ++G      E     +  ++ HP    VL+GS+D TV 
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 175 MWN-ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNP-KSGENIHVIRG 231
           +WN  +  A    F GH   V C  F P D  T  +G  D T++VW+  +S  N  +  G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286
                  +    +  D    ++ S D ++ + +  T   V++L  H  ++    F
Sbjct: 183 QERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 4/149 (2%)
Query: 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
           ++K T       V+ + +HP    VL       V +WN +    +       + V  G F
Sbjct: 4   DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259
                 I  GSDD  +RV+N  +GE +     HP   + +  + +       LSGS D +
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLT 120
Query: 260 VHMVNITTG-KVVSSLVSHTDSIECIGFS 287
           V + N      +  +   H   + C+ F+
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFN 149

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
           F  H D + S+A  PT   +++  G DD   K + W   + +WA E   +GH+  V  +A
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
           F+  D    ASG LD  V++W         TL  G   GV +V ++P      ++  S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
            T+ +W+    + +    GH S+V+   F P    I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 94/235 (40%), Gaps = 5/235 (2%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
           D    FS  SD V  +   PT+   V T     +   W          IQ  +  V +  
Sbjct: 4   DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
           F      +  G  D  +++++ ++G      E     +  ++ HP    VL+GS+D TV 
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 175 MWN-ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNP-KSGENIHVIRG 231
           +WN  +  A    F GH   V C  F P D  T  +G  D T++VW+  +S  N  +  G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286
                  +    +  D    ++ S D ++ + +  T   V++L  H  ++    F
Sbjct: 183 QERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 4/149 (2%)
Query: 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
           ++K T       V+ + +HP    VL       V +WN +    +       + V  G F
Sbjct: 4   DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259
                 I  GSDD  +RV+N  +GE +     HP   + +  + +       LSGS D +
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLT 120
Query: 260 VHMVNITTG-KVVSSLVSHTDSIECIGFS 287
           V + N      +  +   H   + C+ F+
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFN 149

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 22/201 (10%)
Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR 160
           + ++GH  SV +     +   + +G  D  ++++D  +      L G  GGV W   +  
Sbjct: 115 TTLRGHXTSVIT-CLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGV-WALKYAH 172
Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT--PDGKTICTGSDDATLRVW 218
           G I+++GS D TV +W+  +    ++F GH S+V C D     + K I TGS D TL VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 219 N-------PKSGEN------IHVIRGHPYHTEGL-----TCLTISADSTLALSGSKDGSV 260
                   P  GE        H    +PY    L     +  T+S    + +SGS D ++
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTL 292
Query: 261 HMVNITTGKVVSSLVSHTDSI 281
            + ++   K +  L  HTD I
Sbjct: 293 IVWDVAQXKCLYILSGHTDRI 313

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
           F  H D + S+A  PT   +++  G DD   K + W   + +WA E   +GH+  V  +A
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
           F+  D    ASG LD  V++W         TL  G   GV +V ++P      ++  S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
            T+ +W+    + +    GH S+V+   F P    I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 94/235 (40%), Gaps = 5/235 (2%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
           D    FS  SD V  +   PT+   V T     +   W          IQ  +  V +  
Sbjct: 4   DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
           F      +  G  D  +++++ ++G      E     +  ++ HP    VL+GS+D TV 
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 175 MWN-ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNP-KSGENIHVIRG 231
           +WN  +  A    F GH   V C  F P D  T  +G  D T++VW+  +S  N  +  G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286
                  +    +  D    ++ S D ++ + +  T   V++L  H  ++    F
Sbjct: 183 QERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 4/149 (2%)
Query: 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
           ++K T       V+ + +HP    VL       V +WN +    +       + V  G F
Sbjct: 4   DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKF 63
Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259
                 I  GSDD  +RV+N  +GE +     HP   + +  + +       LSGS D +
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLT 120
Query: 260 VHMVNITTG-KVVSSLVSHTDSIECIGFS 287
           V + N      +  +   H   + C+ F+
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFN 149

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
           F  H D + S+A  PT   +++  G DD   K + W   + +WA E   +GH+  V  +A
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
           F+  D    ASG LD  V++W         TL  G   GV +V ++P      ++  S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
            T+ +W+    + +    GH S+V+   F P    I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 94/235 (40%), Gaps = 5/235 (2%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
           D    FS  SD V  +   PT+   V T     +   W          IQ  +  V +  
Sbjct: 4   DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
           F      +  G  D  +++++ ++G      E     +  ++ HP    VL+GS+D TV 
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 175 MWN-ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNP-KSGENIHVIRG 231
           +WN  +  A    F GH   V C  F P D  T  +G  D T++VW+  +S  N  +  G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286
                  +    +  D    ++ S D ++ + +  T   V++L  H  ++    F
Sbjct: 183 QERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 4/149 (2%)
Query: 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
           ++K T       V+ + +HP    VL       V +WN +    +       + V  G F
Sbjct: 4   DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259
                 I  GSDD  +RV+N  +GE +     HP   + +  + +       LSGS D +
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLT 120
Query: 260 VHMVNITTG-KVVSSLVSHTDSIECIGFS 287
           V + N      +  +   H   + C+ F+
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFN 149

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 7/237 (2%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
           +  H     S  V + A +P+    VA GG D+    + +   +     + E+ GH   +
Sbjct: 88  NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
           S   F  D Q++ S G D    +WD  +G    T  G  G V  +S  P   + ++G+ D
Sbjct: 147 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
           ++  +W+         F+GH S +    F P+G    TGSDDAT R+++ ++ + + +  
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 264
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
            H     G+T ++ S    L L+G  D + ++ +         L  H + + C+G +
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 7/237 (2%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
           +  H     S  V + A +P+    VA GG D+    + +   +     + E+ GH   +
Sbjct: 88  NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
           S   F  D Q++ S G D    +WD  +G    T  G  G V  +S  P   + ++G+ D
Sbjct: 147 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
           ++  +W+         F+GH S +    F P+G    TGSDDAT R+++ ++ + + +  
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 264
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
            H     G+T ++ S    L L+G  D + ++ +         L  H + + C+G +
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 7/237 (2%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
           +  H     S  V + A +P+    VA GG D+    + +   +     + E+ GH   +
Sbjct: 88  NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
           S   F  D Q++ S G D    +WD  +G    T  G  G V  +S  P   + ++G+ D
Sbjct: 147 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
           ++  +W+         F+GH S +    F P+G    TGSDDAT R+++ ++ + + +  
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 264
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
            H     G+T ++ S    L L+G  D + ++ +         L  H + + C+G +
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 7/237 (2%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
           +  H     S  V + A +P+    VA GG D+    + +   +     + E+ GH   +
Sbjct: 88  NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
           S   F  D Q++ S G D    +WD  +G    T  G  G V  +S  P   + ++G+ D
Sbjct: 147 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
           ++  +W+         F+GH S +    F P+G    TGSDDAT R+++ ++ + + +  
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 264
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
            H     G+T ++ S    L L+G  D + ++ +         L  H + + C+G +
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 7/237 (2%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
           +  H     S  V + A +P+    VA GG D+    + +   +     + E+ GH   +
Sbjct: 99  NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 157
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
           S   F  D Q++ S G D    +WD  +G    T  G  G V  +S  P   + ++G+ D
Sbjct: 158 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 216
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
           ++  +W+         F+GH S +    F P+G    TGSDDAT R+++ ++ + + +  
Sbjct: 217 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 275
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
            H     G+T ++ S    L L+G  D + ++ +         L  H + + C+G +
Sbjct: 276 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 332

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 60  FSGHSDEVYSVACSPTDA-TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD 118
           F GH  +V  +  +P++      +GG D K   W +  G      + H+  V+S+ +   
Sbjct: 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS 251
Query: 119 GQLLASGGLDGLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
           G   ASG  D   +++D  +         E    G   V +   G ++ AG  D T+ +W
Sbjct: 252 GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311
Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
           +  + + +++  GH + V+    +PDG   C+GS D TLRVW
Sbjct: 312 DVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 12/230 (5%)
Query: 67  VYSVACSPTDATLVATGGGDDKGFFWRI------NQGDWASEIQGHKDSVSSLAFS-MDG 119
           V + A +P+    +A GG D+K   + +      N       +  H + +S+ +F+  D 
Sbjct: 109 VMACAYAPSGCA-IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWN 177
           Q+L + G DG   +WD  SG L  +  G G  V  +   P   G+  ++G  D    +W+
Sbjct: 168 QILTASG-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
                 +  F  H S V    + P G    +GSDDAT R+++ ++   +  I        
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV-AIYSKESIIF 285
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
           G + +  S    L  +G  D ++++ ++  G  VS L  H + +  +  S
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFW-------RINQGDWASEIQGHKDSVSSL 113
           + H   + SVA  P   +L+A G  D     W       R  + D  + I+GH++ V  +
Sbjct: 55  TAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 114 AFSMDGQLLASGGLDGLVQIW--DPSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSE 169
           A+S DG  LA+   D  V IW  D S    +C   L+     V+ V WHP   ++ + S 
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173
Query: 170 DSTVWMWNA--DRAAYLNMFSGHGSSVTCGDF--TPDGKTICTGSDDATLRVWN 219
           D TV +W    D    + + +GH  +V   DF  T     +C+GSDD+T+RVW 
Sbjct: 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 52/194 (26%)
Query: 78  TLVATGGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134
           TL+A+ GGD +   W      W  +    +GH+ +V  +A+S  G  LAS   D    IW
Sbjct: 29  TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
Query: 135 DPSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR------------ 180
             +  + +C  TLEG    V+ V+W P G+++   S D +VW+W  D             
Sbjct: 89  KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148
Query: 181 -------------------AAY----------------LNMFSGHGSSVTCGDFTPDGKT 205
                              A+Y                     GH S+V    F P G+ 
Sbjct: 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR 208
Query: 206 ICTGSDDATLRVWN 219
           + + SDD T+R+W 
Sbjct: 209 LASCSDDRTVRIWR 222

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 6/169 (3%)
Query: 102 EIQGHKDSVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWVSW 157
            +  H DS    LA++  G LLAS G D  ++IW     +  C     EG    V  V+W
Sbjct: 10  RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW 69
Query: 158 HPRGHIVLAGSEDSTVWMW--NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215
            P G+ + + S D+T  +W  N D    +    GH + V    + P G  + T S D ++
Sbjct: 70  SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264
            VW     +    +     HT+ +  +       L  S S D +V +  
Sbjct: 130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 16/239 (6%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
             GH+  V S+A S     L+ +   D     W++   D          +GH   V    
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            + DG    S   D  +++WD ++G       G    V  V    +  ++++GS D T+ 
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
           +W   +   L    GH   V+     P+ K      TI +  +D  ++ WN        +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
                 H   +  LT S D TL  S  KDG + + N+   K + +L S  D +  + FS
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFS 246

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 16/239 (6%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
             GH+  V S+A S     L+ +   D     W++   D          +GH   V    
Sbjct: 7   LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            + DG    S   D  +++WD ++G       G    V  V    +  ++++GS D T+ 
Sbjct: 67  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
           +W   +   L    GH   V+     P+ K      TI +  +D  ++ WN        +
Sbjct: 127 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 182
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
                 H   +  LT S D TL  S  KDG + + N+   K + +L S  D +  + FS
Sbjct: 183 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFS 240

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 16/239 (6%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
             GH+  V S+A S     L+ +   D     W++   D          +GH   V    
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            + DG    S   D  +++WD ++G       G    V  V    +  ++++GS D T+ 
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
           +W   +   L    GH   V+     P+ K      TI +  +D  ++ WN        +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
                 H   +  LT S D TL  S  KDG + + N+   K + +L S  D +  + FS
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFS 246

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 16/239 (6%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
             GH+  V S+A S     L+ +   D     W++   D          +GH   V    
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            + DG    S   D  +++WD ++G       G    V  V    +  ++++GS D T+ 
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
           +W   +   L    GH   V+     P+ K      TI +  +D  ++ WN        +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
                 H   +  LT S D TL  S  KDG + + N+   K + +L S  D +  + FS
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFS 246

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 16/239 (6%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
             GH+  V S+A S     L+ +   D     W++   D          +GH   V    
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            + DG    S   D  +++WD ++G       G    V  V    +  ++++GS D T+ 
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
           +W   +   L    GH   V+     P+ K      TI +  +D  ++ WN        +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
                 H   +  LT S D TL  S  KDG + + N+   K + +L S  D +  + FS
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFS 246

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 1/167 (0%)
Query: 66  EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG 125
           + +++A SP D+  +ATG    K   + +  G     +      + S+A+S DG+ LASG
Sbjct: 124 DAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182
Query: 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185
            +DG++ I+D ++G L  TLEG    +  +++ P   +++  S+D  + +++   A    
Sbjct: 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242
Query: 186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
             SGH S V    F PD     + S D +++VW+  +   +H    H
Sbjct: 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH 289

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 14/207 (6%)
Query: 90  FFWRINQ-GDWASEIQGHKDSVSSLAFSMD----GQLLASGGLDGLVQIWD--PSSGNLK 142
           +F   NQ G    + Q H D++ S+A+  +     + + +G LD LV++W       +L+
Sbjct: 14  YFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ 73
Query: 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD 202
            +LEG   GV  V       I  + S D+ + +W+ +    +              F+PD
Sbjct: 74  WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD 133
Query: 203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI--SADSTLALSGSKDGSV 260
            + + TG+    + ++  +SG+     + +   T G   L+I  S D     SG+ DG +
Sbjct: 134 SQYLATGTHVGKVNIFGVESGK-----KEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFS 287
           ++ +I TGK++ +L  H   I  + FS
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFS 215

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 91/239 (38%), Gaps = 16/239 (6%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
             GH+  V S+A S     L+ +   D     W++   D          +GH   V    
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            + DG    S   D  +++WD ++G       G    V  V    +   +++GS D T+ 
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
           +W   +   L    GH   V+     P+ K      TI +  +D  ++ WN        +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
                 H   +  LT S D TL  S  KDG + + N+   K   +L S  D +  + FS
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL-SAQDEVFSLAFS 246

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           +QGH   V  LA+  DG  LASGG D +VQIWD  S   K T       V+ V+W P   
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 163 IVLA---GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT--GSDDATLRV 217
            +LA   G+ D  +  WNA   A +N     GS VT   ++P  K I +  G  D  L +
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 218 W 218
           W
Sbjct: 332 W 332

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 3/166 (1%)
Query: 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE 169
           V+S+ +S DG  L+ G  +GLV I+D  S     T+ G    V  +SW+   H++ +GS 
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSR 194
Query: 170 DSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
              +   +   A + +    GH S V    +  DG  + +G +D  +++W+ +S      
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT 254
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274
              H    + +      ++      G+ D  +H  N  TG  V+++
Sbjct: 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV 300

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 114/293 (38%), Gaps = 66/293 (22%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS +VYS+  +P +   + +   D +   W          I+ H   V   AF+ +G
Sbjct: 62  LQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 120 QLLASGGLDGLVQIWDPSS-----GNLKCTL-----EGPGGGVEWV-------------- 155
           Q +A GGLD    I++ SS     GN+  +      +G     ++V              
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 156 -----------------SWHPRGH---------------IVLAGSEDSTVWMWNAD-RAA 182
                            S  P GH               + ++GS D+TV +W+    + 
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG---- 238
            +  + GH   +    F PDG+   TGSDD T R+++ ++G  + V    P   +     
Sbjct: 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300
Query: 239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL----VSHTDSIECIGFS 287
           +T +  S    L  +G  +G  ++ +    ++V +L     SH   I C+G S
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS 353

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
           TL+G  G V  + W P  + +++ S+D  + +WNA  +   +    H   V    F P+G
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 204 KTICTGSDDATLRVWNPKSGENI-------HVIRGHPYHTEGLTCLTISADSTLALSGSK 256
           +++  G  D+   ++N  S  +         V+ GH  +    +C  +    T  ++GS 
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS--SCQYVPDQETRLITGSG 178
Query: 257 DGSVHMVNITTGKVVS 272
           D +  + ++TTG+ +S
Sbjct: 179 DQTCVLWDVTTGQRIS 194

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 87/231 (37%), Gaps = 28/231 (12%)
Query: 59  IFSGHSDEVYSVACSPT-----DATLVATGGGDDKGFFWRINQ-------GDWASEIQGH 106
           I  GHSD V S+    +     D+ ++ +G  D     W++ +       G     + GH
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA 166
              VS LA S +     S   D  +++WD  +G       G    V  V++ P    +L+
Sbjct: 76  NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 167 GSEDSTVWMWNADRAAYLNMF--SGHGSSVTCGDFTPDGKT----------ICTGSDDAT 214
              +  + +WN       +      H   V+C  ++P  K+            +   D  
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
           L+VWN     N  +      H   +  L+IS +     +G KD  + + +I
Sbjct: 196 LKVWN----TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 9/201 (4%)
Query: 86  DDKGFFWRINQGDWASEIQGHK--DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143
           D+  + W  + GD    +Q  +  + +SS+A+  +G  LA G     VQ+WD        
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPD 202
            +      V  +SW+   +I+ +GS    +   +   A  ++   SGH   V    + PD
Sbjct: 184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241
Query: 203 GKTICTGSDDATLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258
           G+ + +G +D  + VW    GE     +     H    + +      ++      G+ D 
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301
Query: 259 SVHMVNITTGKVVSSLVSHTD 279
            + + N+ +G  +S++ +H+ 
Sbjct: 302 HIRIWNVCSGACLSAVDAHSQ 322

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 9/201 (4%)
Query: 86  DDKGFFWRINQGDWASEIQGHK--DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143
           D+  + W  + GD    +Q  +  + +SS+A+  +G  LA G     VQ+WD        
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPD 202
            +      V  +SW+   +I+ +GS    +   +   A  ++   SGH   V    + PD
Sbjct: 195 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 252
Query: 203 GKTICTGSDDATLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258
           G+ + +G +D  + VW    GE     +     H    + +      ++      G+ D 
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 312
Query: 259 SVHMVNITTGKVVSSLVSHTD 279
            + + N+ +G  +S++ +H+ 
Sbjct: 313 HIRIWNVCSGACLSAVDAHSQ 333

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 9/201 (4%)
Query: 86  DDKGFFWRINQGDWASEIQGHK--DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143
           D+  + W  + GD    +Q  +  + +SS+A+  +G  LA G     VQ+WD        
Sbjct: 44  DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPD 202
            +      V  +SW+   +I+ +GS    +   +   A  ++   SGH   V    + PD
Sbjct: 104 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161
Query: 203 GKTICTGSDDATLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258
           G+ + +G +D  + VW    GE     +     H    + +      ++      G+ D 
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221
Query: 259 SVHMVNITTGKVVSSLVSHTD 279
            + + N+ +G  +S++ +H+ 
Sbjct: 222 HIRIWNVCSGACLSAVDAHSQ 242

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 21/186 (11%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNAD 179
           L+A G     VQ+ D  SG+    L+G    +  VSW PR   +LA  S DS V +W+  
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 180 RA----------------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223
           RA                A  +  + H   V    FT DG  + T   D  +R+WN  +G
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 224 ENIHVIRGHPYHT--EGLTCLTISADSTLALSGSKDGS-VHMVNITTGKVVSSLVSHTDS 280
           EN  V  G   +   +GL   T+S   +        GS + +  + +G+ ++ L  H  +
Sbjct: 278 ENTLVNYGKVCNNSKKGLK-FTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT 336
Query: 281 IECIGF 286
           ++C  F
Sbjct: 337 VDCCVF 342

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
           D+ +IF+GH+  V  VA      +L  +   D K   W     N    +  +  H   V+
Sbjct: 222 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
            L+F+   + +LA+G  D  V +WD  +  LK  + E     +  V W P    +LA S 
Sbjct: 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 341
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
            D  + +W+  +                 L +  GH + ++   + P+    IC+ S+D 
Sbjct: 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401
Query: 214 TLRVWNPKSGENIH 227
            ++VW  +  EN++
Sbjct: 402 IMQVW--QMAENVY 413

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
           D+ +IF+GH+  V  VA      +L  +   D K   W     N    +  +  H   V+
Sbjct: 224 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 283
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
            L+F+   + +LA+G  D  V +WD  +  LK  + E     +  V W P    +LA S 
Sbjct: 284 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 343
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
            D  + +W+  +                 L +  GH + ++   + P+    IC+ S+D 
Sbjct: 344 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 403
Query: 214 TLRVWNPKSGENIH 227
            ++VW  +  EN++
Sbjct: 404 IMQVW--QMAENVY 415

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASE-IQGHKDSVS 111
           D+  IF+GHS  V  VA      +L  +   D K   W  R N     S  +  H   V+
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
            L+F+   + +LA+G  D  V +WD  +  LK  T E     +  V W P    +LA S 
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
            D  + +W+  +                 L +  GH + ++   + P+    IC+ S+D 
Sbjct: 340 TDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 399
Query: 214 TLRVWNPKSGENIH 227
            +++W  +  ENI+
Sbjct: 400 IMQIW--QMAENIY 411

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
           D+ +IF+GH+  V  VA      +L  +   D K   W     N    +  +  H   V+
Sbjct: 226 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 285
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
            L+F+   + +LA+G  D  V +WD  +  LK  + E     +  V W P    +LA S 
Sbjct: 286 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 345
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
            D  + +W+  +                 L +  GH + ++   + P+    IC+ S+D 
Sbjct: 346 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 405
Query: 214 TLRVWNPKSGENIH 227
            ++VW  +  EN++
Sbjct: 406 IMQVW--QMAENVY 417

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 43/197 (21%)
Query: 103 IQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLKC-------TLEGPGGGVEW 154
           + GH   V  +A+   +  ++ASG  D  V +W+   G L         TLEG    V  
Sbjct: 77  VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 155 VSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSD 211
           V+WHP    ++L+   D+ + +W+    A +       H  ++   D++ DG  ICT   
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
           D  +RV  P+ G                   T+ A+      G++   VH V ++ GK++
Sbjct: 197 DKRVRVIEPRKG-------------------TVVAEKDRPHEGTR--PVHAVFVSEGKIL 235
Query: 272 SSLVSHTDSIECIGFSR 288
           ++           GFSR
Sbjct: 236 TT-----------GFSR 241

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 23/195 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHK-- 107
           +S   FS HS  V +V  +     ++A+GG + + F W +N+      ++     G    
Sbjct: 104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163
Query: 108 --DSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN--LKCTLEGPGGGVEW----VSWH 158
             D V SLA++     + AS G      IWD  +    +  +   P  G++     V WH
Sbjct: 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223
Query: 159 PRGHIVLAGS----EDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFT-PDGKTICTGSD 211
           P+    +A +     D ++ +W+   A      +  GH   +   D+   D   + +   
Sbjct: 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283
Query: 212 DATLRVWNPKSGENI 226
           D T+ +WNP+S E +
Sbjct: 284 DNTVLLWNPESAEQL 298

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASE-IQGHKDSVS 111
           D+  IF+GHS  V  VA      +L  +   D K   W  R N     S  +  H   V+
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
            L+F+   + +LA+G  D  V +WD  +  LK  T E     +  V W P    +LA S 
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
            D  + +W+  +                 L +  GH + ++   + P+    IC+ S+D 
Sbjct: 340 TDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 399
Query: 214 TLRVWNPKSGENIH 227
             ++W  +  ENI+
Sbjct: 400 IXQIW--QXAENIY 411

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 43/197 (21%)
Query: 103 IQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLKC-------TLEGPGGGVEW 154
           + GH   V  +A+   +  ++ASG  D  V +W+   G L         TLEG    V  
Sbjct: 77  VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 155 VSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSD 211
           V+WHP    ++L+   D+ + +W+    A +       H  ++   D++ DG  ICT   
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
           D  +RV  P+ G                   T+ A+      G++   VH V ++ GK++
Sbjct: 197 DKRVRVIEPRKG-------------------TVVAEKDRPHEGTR--PVHAVFVSEGKIL 235
Query: 272 SSLVSHTDSIECIGFSR 288
           ++           GFSR
Sbjct: 236 TT-----------GFSR 241

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
           D+  IF+GH+  V  V+      +L  +   D K   W     N    +  +  H   V+
Sbjct: 218 DAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVN 277
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
            L+F+   + +LA+G  D  V +WD  +  LK  + E     +  V W P    +LA S 
Sbjct: 278 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 337
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
            D  + +W+  +                 L +  GH + ++   + P+    IC+ S+D 
Sbjct: 338 TDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 397
Query: 214 TLRVWNPKSGENIH 227
            ++VW  +  ENI+
Sbjct: 398 IMQVW--QMAENIY 409

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 25/224 (11%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +G +  + SV   P+    + +G  D+    +      + S    H   V S+ ++ DG
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLE-------GPGGGVEWVSWHPRGHIVLAGSEDST 172
            L AS G DG + +++   G      E          G V  ++W P G  + + S D T
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 262
Query: 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPD--------GKTICTGSDDATLRVWNPKSGE 224
           + +WN    A L +      ++  G    D         + + + S +  +   NP+ G 
Sbjct: 263 IKIWNV---ATLKV----EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS 315
Query: 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
              V  GH    + +T L+ SAD     S   +G ++  +I+TG
Sbjct: 316 IDQVRYGH---NKAITALSSSADGKTLFSADAEGHINSWDISTG 356

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Query: 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMF 187
           G V ++D  + N    L G    +  V + P R   +++GS+D+TV ++      + + F
Sbjct: 129 GHVFLFDTGTSN--GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 186
Query: 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR----GHPYHTEGLTCLT 243
             H   V    + PDG    +   D T+ ++N   G    V       +  H+  +  LT
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246
Query: 244 ISADSTLALSGSKDGSVHMVNITTGKV 270
            S D T   S S D ++ + N+ T KV
Sbjct: 247 WSPDGTKIASASADKTIKIWNVATLKV 273

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
           LLA  G  G+++I +P +        G G  +  + +HPR  +++L+ S+D  + +WN  
Sbjct: 87  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
               + +F    GH   V   D+   G+ I +   D +L++W   S   ++ I+
Sbjct: 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 7/198 (3%)
Query: 68  YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL 127
           Y++A SP D+ +  +   D     W ++      + QGH D  S +  S DG  L +GGL
Sbjct: 145 YALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187
           D  V+ WD   G  +         +  + + P G  +  G E S V + + ++     + 
Sbjct: 204 DNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262
Query: 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD 247
             H S V    F   GK   +   D  L  W    G +I   +     +  L+C  IS D
Sbjct: 263 L-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSC-DISVD 317
Query: 248 STLALSGSKDGSVHMVNI 265
               ++GS D    +  +
Sbjct: 318 DKYIVTGSGDKKATVYEV 335

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
           LLA  G  G+++I +P +        G G  +  + +HPR  +++L+ S+D  + +WN  
Sbjct: 86  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
               + +F    GH   V   D+   G+ I +   D +L++W   S   ++ I+
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
           LLA  G  G+++I +P +        G G  +  + +HPR  +++L+ S+D  + +WN  
Sbjct: 86  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
               + +F    GH   V   D+   G+ I +   D +L++W   S   ++ I+
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
           LLA  G  G+++I +P +        G G  +  + +HPR  +++L+ S+D  + +WN  
Sbjct: 82  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
               + +F    GH   V   D+   G+ I +   D +L++W   S   ++ I+
Sbjct: 142 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
           LLA  G  G+++I +P +        G G  +  + +HPR  +++L+ S+D  + +WN  
Sbjct: 123 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
               + +F    GH   V   D+   G+ I +   D +L++W   S   ++ I+
Sbjct: 183 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 236

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 90  FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG 149
           F ++I +     ++ GH   +S L F+   +LL S   DG ++IW   +GN +    G  
Sbjct: 230 FVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS 289
Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209
             +   SW      V++ S D +V +W+  +   L +    G  +  G  + DG+     
Sbjct: 290 QSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA 348
Query: 210 SDDATLRVWNPK 221
             D  + V++ K
Sbjct: 349 FMDGQVNVYDLK 360

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL 165
           H D V  LA   DG  ++    DGL+++ D  +G++  T EG    V  +   P G IV 
Sbjct: 183 HNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVS 241
Query: 166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
            G ED TV +W+ +  +   + +    S+   D   +G  I  GS D  +R+++ + 
Sbjct: 242 CG-EDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDII-VGSSDNLVRIFSQEK 296

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 125 GGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY 183
           G  +G +++ D S+ NL+  + +     +  + + P G  +++ S+D  + +W+    + 
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI--RGHPYHTEGLTC 241
                GH ++VT       G+ + + S D T+R+W   +G  IH    + +P+       
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 230
Query: 242 LTISADSTL-ALSGSKDGSVHM 262
           L +  D  L  +S SK  ++  
Sbjct: 231 LFVGTDRQLHEISTSKKNNLEF 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.87
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.86
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.85
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.78
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.77
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.76
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.75
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.75
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.74
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.74
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.73
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.72
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.71
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.71
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.7
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.69
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.69
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.67
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.66
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.64
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.64
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.63
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.63
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.61
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.61
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.58
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.57
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.56
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.54
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.52
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.51
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.47
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.47
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.45
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.43
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.42
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.42
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.36
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.36
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.35
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.34
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.31
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.31
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.31
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.29
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.29
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.26
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.25
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.25
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.24
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.23
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.23
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.23
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.21
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.2
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.2
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.18
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.18
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.16
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.16
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.15
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.15
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.12
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.12
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.08
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.08
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.05
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.05
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.04
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.02
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.99
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.98
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.94
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.93
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.92
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.91
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.9
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.89
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.89
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.88
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.88
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.85
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.8
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.79
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.77
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.76
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.74
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.73
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.72
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.69
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.67
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.66
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.66
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.62
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.61
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.61
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.6
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.58
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.58
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.57
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.56
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.54
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.5
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.49
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.49
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.42
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.34
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.31
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.31
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.25
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.23
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.11
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.1
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	98.09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.04
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.95
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.94
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.89
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.88
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.84
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.82
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.74
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.73
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.66
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.63
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.62
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.58
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.57
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.56
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.55
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.54
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.5
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.5
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.49
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.44
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.39
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.38
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.38
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.37
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.28
3ott_A	758	Two-component system sensor histidine kinase; beta	97.28
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.2
3ott_A	758	Two-component system sensor histidine kinase; beta	97.18
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.15
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.9
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.82
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.81
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.77
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.69
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.57
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.56
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.32
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.08
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.01
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.74
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.45
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.3
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.28
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	94.66
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.32
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	92.56
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	91.76
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.71
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.0
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.13
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	87.71
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	87.35
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.54
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	86.48
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	86.0
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	85.92
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	85.5
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	83.32
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	81.42

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.4e-45  Score=299.73  Aligned_cols=234  Identities=23%  Similarity=0.332  Sum_probs=217.9

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      .+..++|.+|.+.|++++|+| ++.+|++|+.||.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             ceeEEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence            466789999999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcC-CCCEEEEEeC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSD  211 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  211 (290)
                      ||+.+++.+..+.+|...|.+++|+|++++|++|+.||+|++||++++ .....+.+|...|.+++|+| ++.+|++|+.
T Consensus        82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            999999999999999999999999999999999999999999999887 45577889999999999999 6789999999


Q ss_pred             CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      |+.|++||++++.....+...  +...+..+.|+|  ++.+|++|+.|+.|++||+++++++..+.+|...|++++|+|+
T Consensus       162 D~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~  239 (304)
T 2ynn_A          162 DRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT  239 (304)
T ss_dssp             TSEEEEEETTCSSCSEEEECC--CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred             CCeEEEEECCCCCccceeccC--CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCC
Confidence            999999999988776666543  567899999987  7789999999999999999999999999999999999999998


Q ss_pred             C
Q 022910          290 E  290 (290)
Q Consensus       290 ~  290 (290)
                      +
T Consensus       240 ~  240 (304)
T 2ynn_A          240 L  240 (304)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.5e-45  Score=308.39  Aligned_cols=233  Identities=28%  Similarity=0.473  Sum_probs=222.2

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ......+.+|.++|++++|+| ++.+|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++
T Consensus        98 ~~~~~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i  176 (410)
T 1vyh_C           98 PPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL  176 (410)
T ss_dssp             SSCSCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             CCceEeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            345678999999999999999 7789999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  213 (290)
                      ||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||++++.++..+.+|...|.++.|+|++.+|++|+.|+
T Consensus       177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~  256 (410)
T 1vyh_C          177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  256 (410)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC--------------------CCEEEEEeCCCcEEEEEcCCCcEEEE
Q 022910          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD--------------------STLALSGSKDGSVHMVNITTGKVVSS  273 (290)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~~wd~~~~~~~~~  273 (290)
                      .|++||+++++....+..   |...|.+++|+|+                    +.+|++|+.||.|++||+++++++..
T Consensus       257 ~v~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~  333 (410)
T 1vyh_C          257 TVRVWVVATKECKAELRE---HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT  333 (410)
T ss_dssp             CEEEEETTTCCEEEEECC---CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCceeeEecC---CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            999999999998888876   7889999999996                    67899999999999999999999999


Q ss_pred             EccCCCcEEEEEEecCC
Q 022910          274 LVSHTDSIECIGFSRSE  290 (290)
Q Consensus       274 ~~~~~~~v~~i~~s~d~  290 (290)
                      +.+|.+.|++++|+|+|
T Consensus       334 ~~~h~~~v~~v~~~~~g  350 (410)
T 1vyh_C          334 LVGHDNWVRGVLFHSGG  350 (410)
T ss_dssp             EECCSSCEEEEEECSSS
T ss_pred             EECCCCcEEEEEEcCCC
Confidence            99999999999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.3e-45  Score=298.70  Aligned_cols=231  Identities=23%  Similarity=0.374  Sum_probs=221.1

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      ....+.+|...|.+++|+| ++.++++++.|++|++||+.+++.+..+..|...+.+++|+|++++|++++.+|.|++|+
T Consensus        72 ~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~  150 (321)
T 3ow8_A           72 LQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG  150 (321)
T ss_dssp             EEEEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEE
T ss_pred             eeeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            4557899999999999999 778999999999999999999999999998999999999999999999999999999999


Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                      +.+++....+..+...+.+++|+|++++|++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++++.|+.|
T Consensus       151 ~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i  230 (321)
T 3ow8_A          151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI  230 (321)
T ss_dssp             TTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCE
T ss_pred             cCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ++||+++++....+.+   |...|.+++|+|++.+|++|+.|++|++||+.+++++.++.+|...|++++|+|+|
T Consensus       231 ~iwd~~~~~~~~~~~~---h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g  302 (321)
T 3ow8_A          231 KIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG  302 (321)
T ss_dssp             EEEETTTCCEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             EEEECCCcceeEEEcC---CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            9999999998888876   78899999999999999999999999999999999999999999999999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-44  Score=306.36  Aligned_cols=234  Identities=21%  Similarity=0.399  Sum_probs=223.2

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      .......+.+|.+.|++++|+| ++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|+
T Consensus       139 ~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~  217 (410)
T 1vyh_C          139 TGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK  217 (410)
T ss_dssp             TCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             CCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence            3456788999999999999999 778999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCC----------
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD----------  202 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~----------  202 (290)
                      +||+.++.++..+.+|...|.++.|+|++.+|++|+.|+.|++||+++++....+..|...|.+++|+|+          
T Consensus       218 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  297 (410)
T 1vyh_C          218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT  297 (410)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred             EEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999996          


Q ss_pred             ----------CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 022910          203 ----------GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS  272 (290)
Q Consensus       203 ----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  272 (290)
                                +.+|++|+.|+.|++||++++.++..+.+   |...|++++|+|++++|++|+.||.|++||+.+++++.
T Consensus       298 ~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~---h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~  374 (410)
T 1vyh_C          298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK  374 (410)
T ss_dssp             SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE
T ss_pred             cccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC---CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence                      67899999999999999999999888887   78899999999999999999999999999999999999


Q ss_pred             EEccCCCcEEEEEEecCC
Q 022910          273 SLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       273 ~~~~~~~~v~~i~~s~d~  290 (290)
                      .+.+|...|++++|+|++
T Consensus       375 ~~~~h~~~v~~l~~~~~~  392 (410)
T 1vyh_C          375 TLNAHEHFVTSLDFHKTA  392 (410)
T ss_dssp             EEECCSSCEEEEEECSSS
T ss_pred             EEcCCCCcEEEEEEcCCC
Confidence            999999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.7e-43  Score=293.22  Aligned_cols=237  Identities=23%  Similarity=0.427  Sum_probs=208.0

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      .+......+++|.+.|++++|+| ++.+|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|
T Consensus        43 ~~~~~~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v  121 (340)
T 1got_B           43 IQMRTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             ccchhheeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeE
Confidence            34667889999999999999999 78899999999999999998888777777777777777777777766666655555


Q ss_pred             EEEc---------------------------------------------CCCCceEEEEecCCCCEEEEEEcCCCCEEEE
Q 022910          132 QIWD---------------------------------------------PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA  166 (290)
Q Consensus       132 ~i~d---------------------------------------------~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  166 (290)
                      ++|+                                             +.+++.+..+.+|.+.|.+++|+|++++|++
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  201 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence            5554                                             4445555566778889999999999999999


Q ss_pred             eeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC
Q 022910          167 GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (290)
Q Consensus       167 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (290)
                      |+.||.|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.. ..+...|++++|+|
T Consensus       202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~  280 (340)
T 1got_B          202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSVSFSK  280 (340)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECT
T ss_pred             EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc-CCcccceEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999888776653 22456799999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          247 DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       247 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ++++|++|+.||.|++||+.+++.+..+.+|.++|++++|+|+|
T Consensus       281 ~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg  324 (340)
T 1got_B          281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG  324 (340)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC
Confidence            99999999999999999999999999999999999999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.2e-43  Score=293.09  Aligned_cols=237  Identities=21%  Similarity=0.395  Sum_probs=214.7

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee------------------------------
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS------------------------------  101 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------  101 (290)
                      ........+.+|.+.|++++|+| ++.+|++|+.||+|++||..+++...                              
T Consensus        52 ~~~~~~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i  130 (354)
T 2pbi_B           52 FVMKTRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC  130 (354)
T ss_dssp             CCCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred             cccEEEEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCE
Confidence            34567889999999999999999 77899999999999999986654322                              


Q ss_pred             ------------------eeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcC--CC
Q 022910          102 ------------------EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP--RG  161 (290)
Q Consensus       102 ------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~--~~  161 (290)
                                        .+..|...|.+++|+|++.+|++++.|++|++||+.+++.+..+.+|...|.+++|+|  ++
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g  210 (354)
T 2pbi_B          131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG  210 (354)
T ss_dssp             EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred             EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC
Confidence                              2335778899999999999999999999999999999999999999999999999988  46


Q ss_pred             CEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEE
Q 022910          162 HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC  241 (290)
Q Consensus       162 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  241 (290)
                      ++|++|+.||.|++||+++++++..+..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+.... +...+.+
T Consensus       211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~-~~~~~~~  289 (354)
T 2pbi_B          211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES-IIFGASS  289 (354)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-CCSCEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC-cccceeE
Confidence            899999999999999999999999999999999999999999999999999999999999988776665422 4457899


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          242 LTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ++|+|++++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|+|
T Consensus       290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg  338 (354)
T 2pbi_B          290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG  338 (354)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS
T ss_pred             EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCC
Confidence            9999999999999999999999999999999999999999999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-43  Score=292.12  Aligned_cols=237  Identities=21%  Similarity=0.373  Sum_probs=217.3

Q ss_pred             CCCCCceeeeccCCcCEEEEEECCC---CCcEEEEecCCCcEEEEEccCCee--eeeeccccCCEEEEEECCCCCEEEEE
Q 022910           51 EQPDDSTHIFSGHSDEVYSVACSPT---DATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSMDGQLLASG  125 (290)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~  125 (290)
                      +......+.+.+|.+.|++++|+|+   ++.+|++|+.|++|++|++..++.  ...+.+|...|.+++|++++.+++++
T Consensus        19 ~~~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~   98 (321)
T 3ow8_A           19 NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASS   98 (321)
T ss_dssp             --CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             hhhhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEE
Confidence            3445556778899999999999984   356899999999999999987654  44688999999999999999999999


Q ss_pred             eCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE
Q 022910          126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  205 (290)
                      +.|++|++||+.+++.+..+..+...+.+++|+|++++|++++.+|.|++|++++++....+..+...|.+++|+|++++
T Consensus        99 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  178 (321)
T 3ow8_A           99 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY  178 (321)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred             eCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence            99999999999999999999988888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG  285 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~  285 (290)
                      |++++.||.|++||+++++.+..+..   |...|++++|+|++++|++|+.||.|++||+++++++..+.+|...|++++
T Consensus       179 lasg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  255 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGKLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA  255 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECC---CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcc---cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence            99999999999999999999888876   788999999999999999999999999999999999999999999999999


Q ss_pred             EecCC
Q 022910          286 FSRSE  290 (290)
Q Consensus       286 ~s~d~  290 (290)
                      |+|+|
T Consensus       256 ~sp~~  260 (321)
T 3ow8_A          256 FCPDD  260 (321)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            99986

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.8e-43  Score=286.71  Aligned_cols=233  Identities=22%  Similarity=0.330  Sum_probs=214.7

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ...++.+.+|..+|.+++|+| ++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++
T Consensus        45 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~l  123 (304)
T 2ynn_A           45 QVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL  123 (304)
T ss_dssp             TEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             CceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEE
Confidence            456788999999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCC-ceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEeee-cCCCCeEEEEEcC--CCCEEEE
Q 022910          134 WDPSSG-NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTP--DGKTICT  208 (290)
Q Consensus       134 ~d~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~  208 (290)
                      ||+.++ .....+.+|...|.+++|+| ++.+|++|+.|+.|++||+++......+. .+...+..+.|+|  ++.+|++
T Consensus       124 Wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  203 (304)
T 2ynn_A          124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT  203 (304)
T ss_dssp             EEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE
T ss_pred             EECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE
Confidence            999887 45567888999999999999 67899999999999999998877655554 4667899999987  6789999


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      ++.|+.|++||+++++++..+.+   |...|.+++|+|++++|++|+.||+|++||+.+++++..+..|...+++++|+|
T Consensus       204 ~s~D~~i~iWd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          204 ASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             EETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred             EcCCCeEEEEeCCCCccceeeCC---CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence            99999999999999999998887   788999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 022910          289 SE  290 (290)
Q Consensus       289 d~  290 (290)
                      +|
T Consensus       281 ~~  282 (304)
T 2ynn_A          281 TG  282 (304)
T ss_dssp             TC
T ss_pred             CC
Confidence            75

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.8e-43  Score=287.52  Aligned_cols=232  Identities=24%  Similarity=0.394  Sum_probs=212.8

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-----CeeeeeeccccCCEEEEEECCCCCEEEEEeCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLD  128 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  128 (290)
                      ......|.+|.+.|++++|+|.++.+|++|+.|++|++|++..     +..+..+.+|...|.+++|+|++++|++++.|
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            3456789999999999999996678999999999999999864     34567788999999999999999999999999


Q ss_pred             CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCC------
Q 022910          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD------  202 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------  202 (290)
                      ++|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||++ ++.+..+.+|...|.+++|+|.      
T Consensus        87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~  165 (319)
T 3frx_A           87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD  165 (319)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------
T ss_pred             CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence            999999999999999999999999999999999999999999999999996 4567788889999999999985      


Q ss_pred             CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEE
Q 022910          203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE  282 (290)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~  282 (290)
                      +.+|++++.|+.|++||+++.+....+.+   |...|++++|+|++++|++|+.||.|++||+.+++++..+..+ ..|.
T Consensus       166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~  241 (319)
T 3frx_A          166 SVTIISAGNDKMVKAWNLNQFQIEADFIG---HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVF  241 (319)
T ss_dssp             CCEEEEEETTSCEEEEETTTTEEEEEECC---CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEE
T ss_pred             ccEEEEEeCCCEEEEEECCcchhheeecC---CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEE
Confidence            44899999999999999999988877776   7889999999999999999999999999999999999999864 6899


Q ss_pred             EEEEecCC
Q 022910          283 CIGFSRSE  290 (290)
Q Consensus       283 ~i~~s~d~  290 (290)
                      +++|+|++
T Consensus       242 ~~~~sp~~  249 (319)
T 3frx_A          242 SLAFSPNR  249 (319)
T ss_dssp             EEEECSSS
T ss_pred             EEEEcCCC
Confidence            99999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.5e-43  Score=292.30  Aligned_cols=226  Identities=17%  Similarity=0.237  Sum_probs=198.9

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee----eccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE----IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (290)
                      ....|...|.+++|+| ++ .|++|+.||+|+|||+.+++....    +.+|...|++++|+|++++|++|+.|++|++|
T Consensus        77 ~~~~~~~~v~~~~~s~-d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw  154 (344)
T 4gqb_B           77 AGVQTEAGVADLTWVG-ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW  154 (344)
T ss_dssp             EEEEESSCEEEEEEET-TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeccCCCEEEEEEeC-CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            3445678899999999 54 567999999999999998765443    44799999999999999999999999999999


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeee--cCCCCeEEEEEcC-CCCEEEEEe
Q 022910          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTP-DGKTICTGS  210 (290)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~  210 (290)
                      |+.+++++..+.+|...|.+++|+|++. +|++++.|+.|++||+++++....+.  .+...+.+++|+| ++++|++|+
T Consensus       155 d~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred             ECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence            9999999999999999999999999875 78999999999999999998887764  3556799999999 567889999


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      .||.|++||+++++++..+.+   |...|++++|+|++ ++|++|+.|++|++||+.+++++ .+.+|.+.|++++|+|+
T Consensus       235 ~dg~v~~wd~~~~~~~~~~~~---h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~  310 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLSSAV---HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPL  310 (344)
T ss_dssp             TTSEEEEEESCC--CCEEEEC---CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSS
T ss_pred             cCCcEEEEECCCCcEEEEEcC---CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCC
Confidence            999999999999999998887   78899999999987 58999999999999999988765 57899999999999998


Q ss_pred             C
Q 022910          290 E  290 (290)
Q Consensus       290 ~  290 (290)
                      |
T Consensus       311 ~  311 (344)
T 4gqb_B          311 N  311 (344)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.3e-42  Score=288.98  Aligned_cols=237  Identities=25%  Similarity=0.447  Sum_probs=202.0

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCE-----------
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL-----------  121 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------  121 (290)
                      ...+.+.|.+|.+.|++++|+| ++.+|++|+.||+|+|||+.+++....+..|...|.+++|+|++++           
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~  133 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS  133 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred             eeEEeecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence            4556788999999999999999 7788999999999999999998888777777777777777776554           


Q ss_pred             ---------------------------------------EEEEeCCCcEEEEcCCCCceEEEE-----ecCCCCEEEEEE
Q 022910          122 ---------------------------------------LASGGLDGLVQIWDPSSGNLKCTL-----EGPGGGVEWVSW  157 (290)
Q Consensus       122 ---------------------------------------l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~~i~~  157 (290)
                                                             |++|+.|++|++||+.+++.+..+     .+|...|.+++|
T Consensus       134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~  213 (380)
T 3iz6_a          134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI  213 (380)
T ss_dssp             EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred             EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence                                                   445555566666666666665555     457788999999


Q ss_pred             cC-CCCEEEEeeCCCeEEEEECC-cccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC-
Q 022910          158 HP-RGHIVLAGSEDSTVWMWNAD-RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY-  234 (290)
Q Consensus       158 ~~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-  234 (290)
                      ++ ++++|++|+.||.|++||++ ..+.+..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+..... 
T Consensus       214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~  293 (380)
T 3iz6_a          214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR  293 (380)
T ss_dssp             CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS
T ss_pred             ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc
Confidence            87 78999999999999999998 4577888999999999999999999999999999999999999998887765321 


Q ss_pred             ---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE----ccCCCcEEEEEEecCC
Q 022910          235 ---HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL----VSHTDSIECIGFSRSE  290 (290)
Q Consensus       235 ---~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~----~~~~~~v~~i~~s~d~  290 (290)
                         +...+++++|+|+|++|++|+.||.|++||+.+++.+..+    .+|.+.|++++|+|+|
T Consensus       294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  356 (380)
T 3iz6_a          294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG  356 (380)
T ss_dssp             SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred             cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence               2235899999999999999999999999999999998888    6799999999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.5e-41  Score=274.71  Aligned_cols=226  Identities=26%  Similarity=0.473  Sum_probs=211.9

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      .......+.+|.+.|++++|+| ++.+|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|+
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CceeEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            3556788899999999999999 788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      +||+.+++.+..+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+..|..+|.+++|+|++++|++++.|
T Consensus        91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcE
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI  281 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v  281 (290)
                      |.|++||+++++.+..+...  +...+..++|+|++++|++++.||.|++||+++++++..+.+|...+
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  237 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK  237 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCS--SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS
T ss_pred             CcEEEEECCCCceeeEEecc--CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce
Confidence            99999999999887776543  56789999999999999999999999999999999999999887643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-41  Score=281.08  Aligned_cols=233  Identities=24%  Similarity=0.435  Sum_probs=203.7

Q ss_pred             CCceeeeccCCc-CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee---eeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910           54 DDSTHIFSGHSD-EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        54 ~~~~~~~~~h~~-~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      ...+..+.+|.+ .|.+++|+| ++.+||+|+.|++|+||++.++....   ...+|...|.+++|+|++++|++++.|+
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEeeeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            456788999998 999999999 78899999999999999998876432   2367999999999999999999999999


Q ss_pred             cEEEEcCCCCc--eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc---cEEEeeecCCCCeEEEEEcCCCC
Q 022910          130 LVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       130 ~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~  204 (290)
                      .|++|++..+.  .+..+.+|...|.+++|+|++++|++|+.|+.|++||++++   ..+..+..|...|.+++|+|+++
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            99999988764  56788899999999999999999999999999999999875   34667788999999999999999


Q ss_pred             EEEEEeCCCeEEEEcCCCCee--eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---------------
Q 022910          205 TICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT---------------  267 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~---------------  267 (290)
                      +|++++.|+.|++||.+++..  ...+.+   |...|++++|+|++++|++|+.||+|++|+...               
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~---h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~  240 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEG---HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS  240 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecC---CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCc
Confidence            999999999999999987753  345555   788999999999999999999999999999632               


Q ss_pred             CcEEEEEcc-CCCcEEEEEEecCC
Q 022910          268 GKVVSSLVS-HTDSIECIGFSRSE  290 (290)
Q Consensus       268 ~~~~~~~~~-~~~~v~~i~~s~d~  290 (290)
                      .+++..+.+ |...|++++|+|++
T Consensus       241 ~~~~~~~~~~h~~~v~~v~~~~~~  264 (345)
T 3fm0_A          241 WKCICTLSGFHSRTIYDIAWCQLT  264 (345)
T ss_dssp             EEEEEEECSSCSSCEEEEEECTTT
T ss_pred             cceeEEecCCCCCcEEEEEEecCC
Confidence            235566665 88899999999874

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.4e-40  Score=272.26  Aligned_cols=236  Identities=25%  Similarity=0.422  Sum_probs=214.3

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ......+.+|...|.+++|+| ++.+|++|+.|+.|++|++.+++.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus        55 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i  133 (312)
T 4ery_A           55 GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI  133 (312)
T ss_dssp             CCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             cccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            456778899999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-cCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      ||+.+++.+..+..|..+|.+++|+|++++|++++.||.|++||+++++.+..+. .+..++..++|+|++++|++++.|
T Consensus       134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  213 (312)
T 4ery_A          134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  213 (312)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred             EECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence            9999999999999999999999999999999999999999999999998877654 466789999999999999999999


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      |.|++||+++++.+..+..+......+......+++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+|++
T Consensus       214 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~  291 (312)
T 4ery_A          214 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE  291 (312)
T ss_dssp             TEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSS
T ss_pred             CeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcC
Confidence            999999999999988887754322333333344688999999999999999999999999999999999999999975

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.5e-41  Score=279.67  Aligned_cols=234  Identities=21%  Similarity=0.339  Sum_probs=202.1

Q ss_pred             CCCCceeeeccCCcCEEEEEE-----CCCCCcEEEEecCCCcEEEEEccCC-------eeeeeeccccCCEEEEEECCCC
Q 022910           52 QPDDSTHIFSGHSDEVYSVAC-----SPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDG  119 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~-----~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~  119 (290)
                      ........|.+|.+.|++++|     ++.++.+|++|+.|++|++|++...       .....+.+|...|.+++|+|++
T Consensus         9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R            9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred             eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence            345567889999999999999     6657789999999999999999753       4566788999999999999999


Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee--ecCCCCeEEE
Q 022910          120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF--SGHGSSVTCG  197 (290)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~  197 (290)
                      .++++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.........  ..|...|.++
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~  168 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV  168 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEE
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999844332222  2688899999


Q ss_pred             EEcCCC----------CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          198 DFTPDG----------KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       198 ~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      +|+|++          .+|++++.||.|++||. ..+....+..   |...|++++|+|++++|++|+.||.|++||+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~---h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKA---HESNVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             EECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEEC---CSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             eeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcC---ccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            999986          78999999999999994 4566666665   788999999999999999999999999999944


Q ss_pred             -CcEEEEEccCCCcEEEEEEecCC
Q 022910          268 -GKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       268 -~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                       ..+...+. +...|++++|+|++
T Consensus       245 ~~~~~~~~~-~~~~v~~v~~sp~~  267 (343)
T 2xzm_R          245 LTYPQREFD-AGSTINQIAFNPKL  267 (343)
T ss_dssp             CSSCSEEEE-CSSCEEEEEECSSS
T ss_pred             Ccccceeec-CCCcEEEEEECCCC
Confidence             44444443 45679999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.4e-41  Score=273.07  Aligned_cols=230  Identities=20%  Similarity=0.294  Sum_probs=198.9

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--CeeeeeeccccCCEEEEEECCC--CCEEEEEeCCCcEE
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGLVQ  132 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~  132 (290)
                      +..+.+|.+.|++++|+| ++.+||+|+.|++|+||++..  .+.+..+.+|..+|.+++|+|.  +++|++++.|++|+
T Consensus         2 ~~~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             CEECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             ceeccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            457889999999999999 788999999999999999974  3677889999999999999864  88999999999999


Q ss_pred             EEcCCCCc--eEEEEecCCCCEEEEEEcCC--CCEEEEeeCCCeEEEEECCccc--EEEeeecCCCCeEEEEEcCC----
Q 022910          133 IWDPSSGN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPD----  202 (290)
Q Consensus       133 i~d~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~----  202 (290)
                      +||+.+++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||+++..  ....+.+|...|.+++|+|+    
T Consensus        81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            99998874  55677789999999999997  8899999999999999998763  24566789999999999996    


Q ss_pred             ---------CCEEEEEeCCCeEEEEcCCCCe----eeEEEeCCCCcccCeEEEEEcCCC---CEEEEEeCCCcEEEEEcC
Q 022910          203 ---------GKTICTGSDDATLRVWNPKSGE----NIHVIRGHPYHTEGLTCLTISADS---TLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       203 ---------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~wd~~  266 (290)
                               +++|++|+.|+.|++||++++.    ....+.+   |...|.+++|+|++   .+|++++.|++|++|++.
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~---H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC---CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC---CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                     5799999999999999998765    3445554   88899999999984   899999999999999998


Q ss_pred             CCc---EEEEE--ccCCCcEEEEEEecCC
Q 022910          267 TGK---VVSSL--VSHTDSIECIGFSRSE  290 (290)
Q Consensus       267 ~~~---~~~~~--~~~~~~v~~i~~s~d~  290 (290)
                      +..   ....+  ..|...|.+++|+|+|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  266 (297)
T 2pm7_B          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSG  266 (297)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSS
T ss_pred             CCCCccceeeeecccCCCcEEEEEECCCC
Confidence            743   22333  4678899999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-41  Score=276.63  Aligned_cols=231  Identities=22%  Similarity=0.371  Sum_probs=196.7

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC--eeeeee-cc-ccCCEEEEEECCCCCEEEEEeCCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEI-QG-HKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      .+.+..+.+|.++|.+++|+| +  +|++|+.|++|++|++..+  .....+ .. |...|.+++|+|++++|++++.|+
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccceeeccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence            456788999999999999998 4  8999999999999999875  344455 34 999999999999999999999999


Q ss_pred             cEEEEcCCC-------CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc----ccEEEeeecCCCCeEEEE
Q 022910          130 LVQIWDPSS-------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR----AAYLNMFSGHGSSVTCGD  198 (290)
Q Consensus       130 ~i~i~d~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~~~  198 (290)
                      +|+||++..       .+.+..+.+|...|.+++|+|++++|++|+.|+.|++||++.    .+++..+.+|...|.+++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            999999853       345677889999999999999999999999999999999953    256778889999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEcCCCC--eeeEEEeCCCCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCC------
Q 022910          199 FTPDGKTICTGSDDATLRVWNPKSG--ENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTG------  268 (290)
Q Consensus       199 ~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~------  268 (290)
                      |+|++.+|++++.|+.|++||..++  +++..+.+   |...|.+++|+|+  +.+|++|+.|++|++|++.++      
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~  237 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG---HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ  237 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC---CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC---CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence            9999999999999999999998776  45666665   7889999999998  678999999999999998765      


Q ss_pred             --cEEEEEcc-CCCcEEEEEEecCC
Q 022910          269 --KVVSSLVS-HTDSIECIGFSRSE  290 (290)
Q Consensus       269 --~~~~~~~~-~~~~v~~i~~s~d~  290 (290)
                        .++..+.. |...|++++|++++
T Consensus       238 ~~~~~~~~~~~h~~~v~~v~~s~~~  262 (330)
T 2hes_X          238 EWVCEAILPDVHKRQVYNVAWGFNG  262 (330)
T ss_dssp             EEEEEEECCSCCSSCEEEEEECTTS
T ss_pred             eeEEeeecccccccceEEEEEcCCC
Confidence              45566665 89999999999764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4e-40  Score=270.60  Aligned_cols=230  Identities=20%  Similarity=0.347  Sum_probs=209.9

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ..++..+.+|...|.+++|+| ++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++
T Consensus        55 ~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~v  133 (319)
T 3frx_A           55 GVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV  133 (319)
T ss_dssp             EEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             cccceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            346788999999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCC------CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPR------GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  207 (290)
                      |++. ++.+..+.+|...+.++.|+|.      +..|++++.|+.|++||+++.+....+.+|...|.+++|+|++++|+
T Consensus       134 wd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~  212 (319)
T 3frx_A          134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIA  212 (319)
T ss_dssp             EETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEE
T ss_pred             EECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEE
Confidence            9986 5667788889999999999985      44899999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc--------CCC
Q 022910          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--------HTD  279 (290)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--------~~~  279 (290)
                      +++.||.|++||+++++.+..+..    ...|.+++|+|++.+|++++.+ .|++|++..+..+..+..        |..
T Consensus       213 s~~~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~  287 (319)
T 3frx_A          213 SAGKDGEIMLWNLAAKKAMYTLSA----QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEP  287 (319)
T ss_dssp             EEETTCEEEEEETTTTEEEEEEEC----CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred             EEeCCCeEEEEECCCCcEEEEecC----CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCc
Confidence            999999999999999998888873    4679999999999999988755 599999998888877753        356


Q ss_pred             cEEEEEEecCC
Q 022910          280 SIECIGFSRSE  290 (290)
Q Consensus       280 ~v~~i~~s~d~  290 (290)
                      .|.+++|+|||
T Consensus       288 ~v~~~~~spdg  298 (319)
T 3frx_A          288 HAVSLAWSADG  298 (319)
T ss_dssp             CEEEEEECTTS
T ss_pred             ceeEEEECCCC
Confidence            79999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.1e-41  Score=279.62  Aligned_cols=228  Identities=21%  Similarity=0.288  Sum_probs=195.1

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee----eeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS----EIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (290)
                      .......+|...|++++|+| ++.++ +++.||+|+|||+.+++...    ...+|...|++++|+|++++|++++.|+.
T Consensus        85 ~~~~~~~~~~~~V~~~~~s~-d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~  162 (357)
T 4g56_B           85 SLCTAGVQTEAGVTDVAWVS-EKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS  162 (357)
T ss_dssp             GGCSEEEECSSCEEEEEEET-TTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             eEecccCCCCCCEEEEEEcC-CCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence            34455678999999999999 55554 67789999999998876543    33479999999999999999999999999


Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeee--cCCCCeEEEEEcCC-CCEE
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPD-GKTI  206 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l  206 (290)
                      |++||+.+++.+..+..|...|++++|+|++. ++++++.||.|++||+++++....+.  .+...+.+++|+|+ +.+|
T Consensus       163 v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l  242 (357)
T 4g56_B          163 VKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTF  242 (357)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEE
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceE
Confidence            99999999999999999999999999999875 78999999999999999988766543  46778999999996 5788


Q ss_pred             EEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910          207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG  285 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~  285 (290)
                      ++|+.|+.|++||+++++.+..+..   |...|++++|+|++ ++|++|+.||+|++||+++++++..+ +|.+.|++|+
T Consensus       243 a~g~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~va  318 (357)
T 4g56_B          243 ACGDETGNVSLVNIKNPDSAQTSAV---HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVA  318 (357)
T ss_dssp             EEEESSSCEEEEESSCGGGCEEECC---CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEE
T ss_pred             EEeecccceeEEECCCCcEeEEEec---cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEE
Confidence            9999999999999999999888877   78899999999986 68999999999999999999887655 7999999999


Q ss_pred             Eec
Q 022910          286 FSR  288 (290)
Q Consensus       286 ~s~  288 (290)
                      |+|
T Consensus       319 fsP  321 (357)
T 4g56_B          319 WSP  321 (357)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            998

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.1e-40  Score=293.01  Aligned_cols=234  Identities=23%  Similarity=0.349  Sum_probs=207.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC--eeeeeeccccCCEEEEEECCCCCEEEEEeCC---
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLD---  128 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---  128 (290)
                      ......|.+|...|++++|+| ++.+||+|+.||+|+|||+.++  .....+.+|.++|.+++|+|++++|++++.+   
T Consensus        49 ~~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~  127 (611)
T 1nr0_A           49 LTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER  127 (611)
T ss_dssp             SSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred             cccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCc
Confidence            457788999999999999999 8899999999999999999754  3455678899999999999999999998865   


Q ss_pred             -CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEE
Q 022910          129 -GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (290)
Q Consensus       129 -g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  206 (290)
                       +.|++||  .++....+.+|...|.+++|+|++. .|++|+.|++|++||..+++....+.+|...|.+++|+|++++|
T Consensus       128 ~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~l  205 (611)
T 1nr0_A          128 FGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF  205 (611)
T ss_dssp             SEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             eeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEE
Confidence             4788887  4566677889999999999999987 69999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEcCCCCeeeEEEeCC----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE---------
Q 022910          207 CTGSDDATLRVWNPKSGENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS---------  273 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~---------  273 (290)
                      ++++.|+.|++||+.+++....+...    ..|...|.+++|+|++++|++++.|++|++||+.+++++.+         
T Consensus       206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~  285 (611)
T 1nr0_A          206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED  285 (611)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence            99999999999999999887776421    13888999999999999999999999999999998776543         


Q ss_pred             ----------------------------------EccCCCcEEEEEEecCC
Q 022910          274 ----------------------------------LVSHTDSIECIGFSRSE  290 (290)
Q Consensus       274 ----------------------------------~~~~~~~v~~i~~s~d~  290 (290)
                                                        +.+|...|++++|+|+|
T Consensus       286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg  336 (611)
T 1nr0_A          286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG  336 (611)
T ss_dssp             CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC
Confidence                                              35788999999999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-39  Score=274.71  Aligned_cols=218  Identities=30%  Similarity=0.478  Sum_probs=198.0

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (290)
                      .|.+++|+| ++.+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++....+
T Consensus       125 ~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             BEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            599999999 7889999999999999999999999999999999999999999999999999999999999999888777


Q ss_pred             ecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEee-------ecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 022910          146 EGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMF-------SGHGSSVTCGDFTPDGKTICTGSDDATLRV  217 (290)
Q Consensus       146 ~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  217 (290)
                      . +...+.+++|+| ++++|++|+.||.|++||+++++.+..+       .+|...|.+++|+|++++|++++.||.|++
T Consensus       204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~  282 (393)
T 1erj_A          204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL  282 (393)
T ss_dssp             E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            6 455699999999 8999999999999999999998877766       568899999999999999999999999999


Q ss_pred             EcCCCCe------------eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910          218 WNPKSGE------------NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG  285 (290)
Q Consensus       218 ~d~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~  285 (290)
                      ||+++..            +...+.+   |...|.+++|+|++.+|++|+.||.|++||+.+++++..+.+|.+.|.+++
T Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~  359 (393)
T 1erj_A          283 WNLQNANNKSDSKTPNSGTCEVTYIG---HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA  359 (393)
T ss_dssp             EEC---------------CEEEEEEC---CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EECCCCCCcccccCCCCCcceEEEec---ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEE
Confidence            9997643            2334444   778899999999999999999999999999999999999999999999999


Q ss_pred             Eec
Q 022910          286 FSR  288 (290)
Q Consensus       286 ~s~  288 (290)
                      |+|
T Consensus       360 ~~~  362 (393)
T 1erj_A          360 VAN  362 (393)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1e-39  Score=270.98  Aligned_cols=228  Identities=24%  Similarity=0.437  Sum_probs=197.6

Q ss_pred             eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC--eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (290)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (290)
                      ..+|...|.+++|+| ++.+|++|+.|+++++|++..+  +.+..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus        57 ~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~  135 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD  135 (345)
T ss_dssp             CSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             ccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence            478999999999999 7889999999999999999876  4567788999999999999999999999999999999998


Q ss_pred             CCc---eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc--EEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          138 SGN---LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       138 ~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      ++.   .+..+..|...|.+++|+|++++|++++.|+.|++|+++++.  +...+.+|...|.+++|+|++++|++++.|
T Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD  215 (345)
T ss_dssp             TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence            764   356677899999999999999999999999999999998764  456788999999999999999999999999


Q ss_pred             CeEEEEcCCCC---------------eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--------
Q 022910          213 ATLRVWNPKSG---------------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK--------  269 (290)
Q Consensus       213 g~i~i~d~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--------  269 (290)
                      +.|++|+....               +++..+.+.  |...|.+++|+|++.+|++++.|+.|++|+...+.        
T Consensus       216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  293 (345)
T 3fm0_A          216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS  293 (345)
T ss_dssp             SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE
T ss_pred             CeEEEeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE
Confidence            99999996322               122333332  67889999999999999999999999999987542        


Q ss_pred             -EEEEEccCCCcEEEEEEecCC
Q 022910          270 -VVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       270 -~~~~~~~~~~~v~~i~~s~d~  290 (290)
                       ......+|...|++++|+|++
T Consensus       294 ~~~~~~~~h~~~V~~v~~~p~~  315 (345)
T 3fm0_A          294 LTAHLHQAHSQDVNCVAWNPKE  315 (345)
T ss_dssp             EEEEETTSSSSCEEEEEECSSS
T ss_pred             EEeeecccccCcEeEeEEeCCC
Confidence             123346899999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.9e-40  Score=270.65  Aligned_cols=208  Identities=21%  Similarity=0.243  Sum_probs=182.7

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcC
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDP  136 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~  136 (290)
                      ..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++. +|++++.|++|++||+
T Consensus       121 ~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~  199 (344)
T 4gqb_B          121 FCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT  199 (344)
T ss_dssp             EEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             ccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence            34568999999999999 788999999999999999999999999999999999999999885 7899999999999999


Q ss_pred             CCCceEEEEe--cCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC-CEEEEEeCC
Q 022910          137 SSGNLKCTLE--GPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDD  212 (290)
Q Consensus       137 ~~~~~~~~~~--~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d  212 (290)
                      .+++....+.  .+...+.+++|+|+ +++|++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++|+.|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D  279 (344)
T 4gqb_B          200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED  279 (344)
T ss_dssp             TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT
T ss_pred             cccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC
Confidence            9999887764  35567999999995 5689999999999999999999999999999999999999987 578999999


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcE
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKV  270 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~  270 (290)
                      ++|+|||+++++... +.+   |...|++++|+|++. +|++|+.||+|++|++.+...
T Consensus       280 ~~i~vwd~~~~~~~~-~~~---H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          280 CSLAVLDSSLSELFR-SQA---HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             SCEEEECTTCCEEEE-ECC---CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             CeEEEEECCCCcEEE-EcC---CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            999999999887653 444   889999999999876 677899999999999987543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.2e-41  Score=274.06  Aligned_cols=233  Identities=19%  Similarity=0.301  Sum_probs=191.4

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECC--CCCEEEEEeCCCcEE
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ  132 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~  132 (290)
                      ...+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.++.  .+..+.+|..+|.+++|+|  ++++|++++.|++|+
T Consensus         6 ~~~~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             --------CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             eeecccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            345679999999999999 78899999999999999998864  4667889999999999986  488999999999999


Q ss_pred             EEcCCCCc--eEEEEecCCCCEEEEEEcCC--CCEEEEeeCCCeEEEEECCccc---EEEeeecCCCCeEEEEEcCC---
Q 022910          133 IWDPSSGN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPD---  202 (290)
Q Consensus       133 i~d~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~---  202 (290)
                      +||+.+++  ....+.+|...|.+++|+|+  +.+|++|+.|+.|++|+++...   ....+.+|...|.+++|+|+   
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            99998874  56677889999999999997  7899999999999999998763   24556678899999999997   


Q ss_pred             --------------CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCC----CEEEEEeCCCcEEEEE
Q 022910          203 --------------GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS----TLALSGSKDGSVHMVN  264 (290)
Q Consensus       203 --------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~~wd  264 (290)
                                    +++|++|+.|+.|++||++.......+.....|...|.+++|+|++    .+|++|+.||+|++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                          4689999999999999997653222333333488999999999986    8999999999999999


Q ss_pred             cCCCc----EEEEEccCCCcEEEEEEecCC
Q 022910          265 ITTGK----VVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       265 ~~~~~----~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +.+..    ....+..|...|++++|+|+|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g  274 (316)
T 3bg1_A          245 CDDASSNTWSPKLLHKFNDVVWHVSWSITA  274 (316)
T ss_dssp             CSSTTCCCCBCCEEEECSSCEEEEEECTTT
T ss_pred             ccCccccchhhhhhhcCCCcEEEEEEcCCC
Confidence            87631    223456788999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.2e-39  Score=288.38  Aligned_cols=236  Identities=23%  Similarity=0.425  Sum_probs=203.7

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ......+.+|...|++++|+|+++.+|++|+.|++|++|+..+++....+.+|...|.+++|+|++++|++++.|++|++
T Consensus       137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~l  216 (611)
T 1nr0_A          137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL  216 (611)
T ss_dssp             CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEE
Confidence            34566789999999999999965567999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCceEEEEe-------cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE---------------------
Q 022910          134 WDPSSGNLKCTLE-------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN---------------------  185 (290)
Q Consensus       134 ~d~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---------------------  185 (290)
                      |++.+++.+..+.       +|.+.|.+++|+|++++|++++.|++|++||+++++.+.                     
T Consensus       217 wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (611)
T 1nr0_A          217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA  296 (611)
T ss_dssp             EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred             EECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence            9999999888874       689999999999999999999999999999998765443                     


Q ss_pred             ----------------------eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeC-CC---------
Q 022910          186 ----------------------MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG-HP---------  233 (290)
Q Consensus       186 ----------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~---------  233 (290)
                                            .+.+|...|.+++|+|++++|++++.|+.|++||+.++.....+.. +.         
T Consensus       297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s  376 (611)
T 1nr0_A          297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT  376 (611)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred             EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence                                  3346888999999999999999999999999999987654322100 00         


Q ss_pred             ---------------------------------------------------------------------CcccCeEEEEE
Q 022910          234 ---------------------------------------------------------------------YHTEGLTCLTI  244 (290)
Q Consensus       234 ---------------------------------------------------------------------~~~~~v~~~~~  244 (290)
                                                                                           .+...+.+++|
T Consensus       377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~  456 (611)
T 1nr0_A          377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL  456 (611)
T ss_dssp             TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred             CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence                                                                                 01235788999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCcE--EEEEccCCCcEEEEEEecCC
Q 022910          245 SADSTLALSGSKDGSVHMVNITTGKV--VSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       245 ~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +|+|++|++|+.|++|++|++.+++.  +.. .+|...|++++|||||
T Consensus       457 spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg  503 (611)
T 1nr0_A          457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNG  503 (611)
T ss_dssp             CTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTS
T ss_pred             eCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCC
Confidence            99999999999999999999987654  334 6799999999999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.7e-39  Score=267.46  Aligned_cols=229  Identities=19%  Similarity=0.301  Sum_probs=196.8

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ..+...+.+|...|.+++|+| ++.++++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus        66 ~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~  144 (343)
T 2xzm_R           66 GIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKL  144 (343)
T ss_dssp             EEEEEEECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEE
T ss_pred             ccccchhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEE
Confidence            345778999999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCceEEEEe---cCCCCEEEEEEcCCC----------CEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEc
Q 022910          134 WDPSSGNLKCTLE---GPGGGVEWVSWHPRG----------HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT  200 (290)
Q Consensus       134 ~d~~~~~~~~~~~---~~~~~i~~i~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  200 (290)
                      ||+... ......   .|...|.+++|+|++          .+|++++.||.|++||. ..+....+.+|...|.+++|+
T Consensus       145 wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s  222 (343)
T 2xzm_R          145 WNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSIS  222 (343)
T ss_dssp             EESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEEC
T ss_pred             EeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEEC
Confidence            999843 333333   577889999999986          79999999999999994 556677888999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEcCCC-CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE--EEc--
Q 022910          201 PDGKTICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS--SLV--  275 (290)
Q Consensus       201 ~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~--  275 (290)
                      |++++|++|+.||.|++||++. ......+.    +...|.+++|+|++.+|+++ .|+.|++|++.+++...  .+.  
T Consensus       223 ~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~----~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~  297 (343)
T 2xzm_R          223 PNGKYIATGGKDKKLLIWDILNLTYPQREFD----AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAE  297 (343)
T ss_dssp             TTSSEEEEEETTCEEEEEESSCCSSCSEEEE----CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCC
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcccceeec----CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecC
Confidence            9999999999999999999954 34444443    34569999999999888755 57889999998766433  443  


Q ss_pred             ---------cCCCcEEEEEEecCC
Q 022910          276 ---------SHTDSIECIGFSRSE  290 (290)
Q Consensus       276 ---------~~~~~v~~i~~s~d~  290 (290)
                               +|...|++++|+|+|
T Consensus       298 ~~~~~~~~~~~~~~v~~~~~sp~g  321 (343)
T 2xzm_R          298 PITKAEGQKGKNPQCTSLAWNALG  321 (343)
T ss_dssp             SGGGBTTBCCSCCCEEEEEECSSS
T ss_pred             cchhhhhhcCCCCceEEEEECCCC
Confidence                     677899999999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.8e-39  Score=271.58  Aligned_cols=227  Identities=26%  Similarity=0.472  Sum_probs=199.7

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccC------------------CEEEEEECCCCCEE
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD------------------SVSSLAFSMDGQLL  122 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------------------~i~~~~~~~~~~~l  122 (290)
                      .+|.+.|.+++|+| ++.+||+|+ ++.+++|++.+++.+..+..|..                  .|.+++|+|++++|
T Consensus        61 ~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l  138 (393)
T 1erj_A           61 LDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  138 (393)
T ss_dssp             EECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             cCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence            37999999999999 778888876 78999999999988877765432                  49999999999999


Q ss_pred             EEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC-
Q 022910          123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-  201 (290)
Q Consensus       123 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-  201 (290)
                      ++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+++++....+. +...+.+++|+| 
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~  217 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPG  217 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECST
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECC
Confidence            999999999999999999999999999999999999999999999999999999999998877776 567899999999 


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCC----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----------
Q 022910          202 DGKTICTGSDDATLRVWNPKSGENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT----------  267 (290)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~----------  267 (290)
                      ++++|++|+.||.|++||++++..+..+...    ..|...|.+++|+|++++|++|+.||.|++||+++          
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  297 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  297 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence            8999999999999999999998877766321    23788999999999999999999999999999975          


Q ss_pred             --CcEEEEEccCCCcEEEEEEecCC
Q 022910          268 --GKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       268 --~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                        +.+...+.+|...|.+++|+|++
T Consensus       298 ~~~~~~~~~~~h~~~v~~~~~~~~~  322 (393)
T 1erj_A          298 NSGTCEVTYIGHKDFVLSVATTQND  322 (393)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGG
T ss_pred             CCCcceEEEecccCcEEEEEECCCC
Confidence              34567788999999999999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-41  Score=284.29  Aligned_cols=228  Identities=11%  Similarity=0.133  Sum_probs=196.9

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC--eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      ..+..|.++|++++|+| ++.+|++|+.|+.|++|++.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus         5 ~~~~~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            5 QVLHILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             EEEEECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred             eeEecCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            45566788999999999 7889999999999999999988  77888999999999999999999999999999999999


Q ss_pred             CCCCc---eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---EEEeeec-CCCCeEEEEEcCCCCEEEE
Q 022910          136 PSSGN---LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSG-HGSSVTCGDFTPDGKTICT  208 (290)
Q Consensus       136 ~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~l~~  208 (290)
                      +.+++   ....+..|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |...|.+++|+|++++|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~  163 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA  163 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred             cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence            99877   667778899999999999999999999999999999999887   3677777 9999999999999999999


Q ss_pred             EeCCCeEEEEcCCC------------------CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 022910          209 GSDDATLRVWNPKS------------------GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (290)
Q Consensus       209 ~~~dg~i~i~d~~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  270 (290)
                      ++.|+.|++||++.                  ++.+..+    .|...|++++|+|++++|++++.||.|++||+.+++.
T Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            99999999999853                  2233333    4888999999999999999999999999999999987


Q ss_pred             ----EEEEccCCCcEEEEEEecCC
Q 022910          271 ----VSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       271 ----~~~~~~~~~~v~~i~~s~d~  290 (290)
                          +..+.+|..+|++++|+|+|
T Consensus       240 ~~~~~~~~~~~~~~v~~~~~s~~~  263 (377)
T 3dwl_C          240 PPRALITVKLSQLPLRSLLWANES  263 (377)
T ss_dssp             CEEECCCEECSSSCEEEEEEEETT
T ss_pred             cceeeEeecCCCCceEEEEEcCCC
Confidence                88889999999999999986

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.9e-39  Score=291.61  Aligned_cols=232  Identities=27%  Similarity=0.455  Sum_probs=209.4

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-----eeeeeeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-----DWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      .....+++|.+.|++++|+|+++.+|++|+.|++|++|++.+.     .....+.+|...|.+++|+|++++|++|+.||
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            3456789999999999999977789999999999999999763     34567889999999999999999999999999


Q ss_pred             cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee---ecCCCCeEEEEEcCCC--C
Q 022910          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDG--K  204 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~--~  204 (290)
                      +|+|||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+.........   .+|...|.+++|+|++  .
T Consensus       453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  532 (694)
T 3dm0_A          453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP  532 (694)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred             cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence            9999999999999999999999999999999999999999999999998765443332   4588899999999976  6


Q ss_pred             EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEE
Q 022910          205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI  284 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i  284 (290)
                      +|++++.|+.|++||+++++....+..   |...|++++|+|++++|++|+.||.|++||+.+++.+..+.. ...|.++
T Consensus       533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~---h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~  608 (694)
T 3dm0_A          533 TIVSASWDKTVKVWNLSNCKLRSTLAG---HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHAL  608 (694)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEE
T ss_pred             eEEEEeCCCeEEEEECCCCcEEEEEcC---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEE
Confidence            899999999999999999988888876   788999999999999999999999999999999999988875 5689999


Q ss_pred             EEecCC
Q 022910          285 GFSRSE  290 (290)
Q Consensus       285 ~~s~d~  290 (290)
                      +|+|++
T Consensus       609 ~~sp~~  614 (694)
T 3dm0_A          609 CFSPNR  614 (694)
T ss_dssp             EECSSS
T ss_pred             EEcCCC
Confidence            999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-39  Score=265.67  Aligned_cols=228  Identities=26%  Similarity=0.443  Sum_probs=188.8

Q ss_pred             eeee-cc-CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-------CeeeeeeccccCCEEEEEECCCCCEEEEEeC
Q 022910           57 THIF-SG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-------GDWASEIQGHKDSVSSLAFSMDGQLLASGGL  127 (290)
Q Consensus        57 ~~~~-~~-h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  127 (290)
                      ...+ .+ |.+.|.+++|+| ++.+|++|+.|++|++|++..       .+.+..+.+|...|.+++|+|++++|++++.
T Consensus        49 ~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~  127 (330)
T 2hes_X           49 IDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR  127 (330)
T ss_dssp             EEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred             EEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence            4445 44 999999999999 788999999999999999853       3456778899999999999999999999999


Q ss_pred             CCcEEEEcCCCC----ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc--cEEEeeecCCCCeEEEEEcC
Q 022910          128 DGLVQIWDPSSG----NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTP  201 (290)
Q Consensus       128 dg~i~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~  201 (290)
                      |++|++||+...    +.+..+..|...|.+++|+|++.+|++++.|+.|++|++.++  +++..+.+|...|.+++|+|
T Consensus       128 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~  207 (330)
T 2hes_X          128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK  207 (330)
T ss_dssp             TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC
T ss_pred             CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC
Confidence            999999999432    456778889999999999999999999999999999998765  67888999999999999999


Q ss_pred             C--CCEEEEEeCCCeEEEEcCCCC--------eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--
Q 022910          202 D--GKTICTGSDDATLRVWNPKSG--------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK--  269 (290)
Q Consensus       202 ~--~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--  269 (290)
                      +  +.+|++++.|++|++||++.+        .....+..  .|...|.+++|++++ +|++++.||.|++|+..+++  
T Consensus       208 ~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~  284 (330)
T 2hes_X          208 TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD--VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK  284 (330)
T ss_dssp             SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS--CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc--ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE
Confidence            8  678999999999999998754        22222222  277899999999765 89999999999999998774  


Q ss_pred             EEEE-EccCCC-cEEEEEEec
Q 022910          270 VVSS-LVSHTD-SIECIGFSR  288 (290)
Q Consensus       270 ~~~~-~~~~~~-~v~~i~~s~  288 (290)
                      .+.. +.+|.. .|++++|+|
T Consensus       285 ~~~~~~~~h~~~~v~~v~~~~  305 (330)
T 2hes_X          285 VFAKRALCHGVYEINVVKWLE  305 (330)
T ss_dssp             EEEEESCTTTTSCEEEEEEC-
T ss_pred             EEeccccccccceEEEEEEec
Confidence            3433 357877 899999998

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-38  Score=262.09  Aligned_cols=231  Identities=16%  Similarity=0.272  Sum_probs=208.4

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ......+.+|.+.|++++|+| ++.+|++|+.||.|++|++.+++.+..+..|...|.+++|+|++++|++++.||.|++
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             ccccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            445566899999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCceEEEEecCCC------------------------------------------------------------CEE
Q 022910          134 WDPSSGNLKCTLEGPGG------------------------------------------------------------GVE  153 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~------------------------------------------------------------~i~  153 (290)
                      ||+.+++.+..+. +..                                                            .+.
T Consensus       101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            9998877655543 222                                                            566


Q ss_pred             EEEEcCCCCEEEEeeCCCeEEEEECCc-ccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCC
Q 022910          154 WVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH  232 (290)
Q Consensus       154 ~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  232 (290)
                      +++|+|++++|++++.+|.|++||+++ .+.+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+.  
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--  257 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--  257 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--
Confidence            777777777888888889999999988 67788888899999999999999999999999999999999999888887  


Q ss_pred             CCcccCeEEEEEcCCCCEEEEEeCCC--------------cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          233 PYHTEGLTCLTISADSTLALSGSKDG--------------SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                        +...+..++|+|+++++++++.++              .|++||+.+++.+..+.+|...|++++|+|+|
T Consensus       258 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~  327 (369)
T 3zwl_B          258 --TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG  327 (369)
T ss_dssp             --CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             --CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC
Confidence              577899999999999999999988              89999999999999999999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.3e-38  Score=281.40  Aligned_cols=229  Identities=33%  Similarity=0.584  Sum_probs=211.6

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      ....+..+.+|...|.+++|+| ++.+|++|+.+|.|++|+. +++.+..+..|...|.+++|+|++++|++++.|+.|+
T Consensus       333 ~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~  410 (577)
T 2ymu_A          333 NGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK  410 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             CCCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence            4556778899999999999999 7889999999999999995 5677888889999999999999999999999999999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      +|+. +++.+..+..|...|++++|+|++++|++++.|+.|++|++ +++.+..+.+|...|.+++|+|++++|++++.|
T Consensus       411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d  488 (577)
T 2ymu_A          411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD  488 (577)
T ss_dssp             EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred             EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            9995 57788889999999999999999999999999999999996 567788889999999999999999999999999


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +.|++||. +++.+..+.+   |...|++++|+|++++|++++.||.|++||. +++++..+.+|.+.|++++|+|||
T Consensus       489 ~~i~iw~~-~~~~~~~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg  561 (577)
T 2ymu_A          489 KTVKLWNR-NGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG  561 (577)
T ss_dssp             SEEEEEET-TSCEEEEEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS
T ss_pred             CEEEEEcC-CCCEEEEEeC---CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCC
Confidence            99999995 6777788876   7889999999999999999999999999995 789999999999999999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.2e-40  Score=273.53  Aligned_cols=230  Identities=16%  Similarity=0.243  Sum_probs=190.4

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecC------CCcEEEEEccCCeeee----eeccccCCEEEEEECCCCCEEEEEeC
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGG------DDKGFFWRINQGDWAS----EIQGHKDSVSSLAFSMDGQLLASGGL  127 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~  127 (290)
                      ....+|...|++++|+| ++.+||+|+.      |+.|++|+..++....    ....|...|.+++|+|++. +++++.
T Consensus        36 ~~p~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~  113 (357)
T 4g56_B           36 TAPACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASD  113 (357)
T ss_dssp             ----CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEET
T ss_pred             CCcccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEEC
Confidence            34467999999999999 8889999987      7789999987765433    3346888999999999875 556788


Q ss_pred             CCcEEEEcCCCCceEE----EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC
Q 022910          128 DGLVQIWDPSSGNLKC----TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG  203 (290)
Q Consensus       128 dg~i~i~d~~~~~~~~----~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  203 (290)
                      ||+|+|||+.+++...    ...+|...|++++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++
T Consensus       114 dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~  193 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGK  193 (357)
T ss_dssp             TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTC
T ss_pred             CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCC
Confidence            9999999998876542    334688899999999999999999999999999999999999999999999999999987


Q ss_pred             C-EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcE
Q 022910          204 K-TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI  281 (290)
Q Consensus       204 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v  281 (290)
                      . ++++++.||.|++||+++++....+.... +...+++++|+|+ +.+|++|+.|+.|++||+++++++..+.+|...|
T Consensus       194 ~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v  272 (357)
T 4g56_B          194 DTIFLSCGEDGRILLWDTRKPKPATRIDFCA-SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNI  272 (357)
T ss_dssp             SSCEEEEETTSCEEECCTTSSSCBCBCCCTT-CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCE
T ss_pred             CceeeeeccCCceEEEECCCCceeeeeeecc-ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeE
Confidence            4 78999999999999999988766554332 6778999999996 5789999999999999999999999999999999


Q ss_pred             EEEEEecCC
Q 022910          282 ECIGFSRSE  290 (290)
Q Consensus       282 ~~i~~s~d~  290 (290)
                      ++++|+|++
T Consensus       273 ~~l~~sp~~  281 (357)
T 4g56_B          273 TGLAYSYHS  281 (357)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEcCCC
Confidence            999999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-39  Score=268.90  Aligned_cols=232  Identities=19%  Similarity=0.303  Sum_probs=202.3

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc--CCeeeeeeccccCCEEEEEECCC--CCEEEEEeCCCc
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--QGDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGL  130 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~  130 (290)
                      .++..+.+|.+.|++++|+| ++.+|++|+.||.|++|++.  +++.+..+.+|...|++++|+++  +++|++++.||.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ---CCEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CccEEecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            46788999999999999999 78899999999999999998  56677788899999999999987  899999999999


Q ss_pred             EEEEcCCCCc--eEEEEecCCCCEEEEEEcCC--CCEEEEeeCCCeEEEEECCccc--EEEeeecCCCCeEEEEEcC---
Q 022910          131 VQIWDPSSGN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTP---  201 (290)
Q Consensus       131 i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~---  201 (290)
                      |++||+.+++  .+..+..|...|.+++|+|+  +.+|++++.+|.|++||+++..  ....+..|...|.+++|+|   
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            9999999987  67777889999999999999  9999999999999999998873  4456678999999999999   


Q ss_pred             ----------CCCEEEEEeCCCeEEEEcCCCCeee----EEEeCCCCcccCeEEEEEcCC---CCEEEEEeCCCcEEEEE
Q 022910          202 ----------DGKTICTGSDDATLRVWNPKSGENI----HVIRGHPYHTEGLTCLTISAD---STLALSGSKDGSVHMVN  264 (290)
Q Consensus       202 ----------~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~wd  264 (290)
                                ++.+|++++.||.|++||++++...    ..+..   |...|.+++|+|+   +.+|++++.||.|++||
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC---CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec---ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence                      6999999999999999999876532    33443   7889999999999   89999999999999999


Q ss_pred             cCCCc---EEEEE--ccCCCcEEEEEEecCC
Q 022910          265 ITTGK---VVSSL--VSHTDSIECIGFSRSE  290 (290)
Q Consensus       265 ~~~~~---~~~~~--~~~~~~v~~i~~s~d~  290 (290)
                      +.++.   ....+  ..|...|++++|+|+|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  268 (379)
T 3jrp_A          238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSG  268 (379)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSS
T ss_pred             CCCCCccceeeeeccccCCCcEEEEEEcCCC
Confidence            99864   22333  3488899999999986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=265.83  Aligned_cols=240  Identities=15%  Similarity=0.249  Sum_probs=203.7

Q ss_pred             CCCCCCceeeeccCCcCEEEEEECCCC--CcEEEEecCCCcEEEEEccC-Ceee-eeeccccCCEEEEEECCCCCEEEEE
Q 022910           50 TEQPDDSTHIFSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRINQ-GDWA-SEIQGHKDSVSSLAFSMDGQLLASG  125 (290)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~  125 (290)
                      ...+...+..+.+|.+.|++++|+|+.  +.+|++|+.||.|++|++.+ +..+ ..+.+|...|++++|+|++++|+++
T Consensus        25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence            445678889999999999999999954  68999999999999999997 4444 6788899999999999999999999


Q ss_pred             eCCCcEEEEcCCCCceEEEEecCCCCEEEEEE--cCCCCEEEEeeCCCeEEEEECCcccEEEeeecCC------------
Q 022910          126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW--HPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG------------  191 (290)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------  191 (290)
                      +.||.|++||+.+++.+. +..|...|.+++|  +|++++|++++.||.|++||+++++.+..+..+.            
T Consensus       105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA  183 (368)
T ss_dssp             ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEE
T ss_pred             cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCee
Confidence            999999999999988766 5568899999999  8999999999999999999999887655554332            


Q ss_pred             -----------------------------CCeEEEEEcCCCCE----EEEEeCCCeEEEEcCCCC---eeeEEEeCCCC-
Q 022910          192 -----------------------------SSVTCGDFTPDGKT----ICTGSDDATLRVWNPKSG---ENIHVIRGHPY-  234 (290)
Q Consensus       192 -----------------------------~~i~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~-  234 (290)
                                                   ..+.++.+.+....    +++++.||.|++|+++..   .....+..+.. 
T Consensus       184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  263 (368)
T 3mmy_A          184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN  263 (368)
T ss_dssp             EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred             EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence                                         23444555444333    999999999999999887   45566665321 


Q ss_pred             --------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          235 --------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       235 --------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                              |...|++++|+|++++|++|+.||.|++||+.+++++..+..|..+|++++|+|+|
T Consensus       264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g  327 (368)
T 3mmy_A          264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG  327 (368)
T ss_dssp             ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS
T ss_pred             cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC
Confidence                    11279999999999999999999999999999999999999999999999999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-38  Score=266.70  Aligned_cols=228  Identities=18%  Similarity=0.212  Sum_probs=205.4

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (290)
                      .+..|.++|++++|+| ++.+|++|+.++.|++|++.+++  .+..+.+|...|.+++|+|++++|++++.||.|++|++
T Consensus         3 ~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             EEESCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             eecccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence            4566999999999999 78899999999999999999987  78888899999999999999999999999999999999


Q ss_pred             CCCceEEEE--ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE----EEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910          137 SSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       137 ~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      .+++....+  ..|...|.+++|+|++++|++++.+|.|++|+++....    ......|...|.+++|+|++++|++++
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  161 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  161 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence            888755444  56888999999999999999999999999999988762    333356889999999999999999999


Q ss_pred             CCCeEEEEcCC------------------CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 022910          211 DDATLRVWNPK------------------SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS  272 (290)
Q Consensus       211 ~dg~i~i~d~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  272 (290)
                      .||.|++||++                  .++.+..+..   |...|.+++|+|++++|++++.||.|++||+++++++.
T Consensus       162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  238 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS---SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA  238 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC---CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred             CCCCEEEEEcccccccccccccccccccchhhheEecCC---CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence            99999999954                  5666666654   78899999999999999999999999999999999999


Q ss_pred             EEccCCCcEEEEEEecCC
Q 022910          273 SLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       273 ~~~~~~~~v~~i~~s~d~  290 (290)
                      .+..|..+|++++|+|++
T Consensus       239 ~~~~~~~~v~~~~~~~~~  256 (372)
T 1k8k_C          239 TLASETLPLLAVTFITES  256 (372)
T ss_dssp             EEECSSCCEEEEEEEETT
T ss_pred             EEccCCCCeEEEEEecCC
Confidence            999999999999999985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-38  Score=263.08  Aligned_cols=233  Identities=20%  Similarity=0.333  Sum_probs=203.5

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----eeeeeeccccCCEEEEEECC--CCCEEEEEeCCC
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSM--DGQLLASGGLDG  129 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg  129 (290)
                      ....+.+|.+.|++++|+| ++.+|++|+.||.|++|++.++    +....+.+|...|.+++|+|  ++++|++++.||
T Consensus         3 ~~~~~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg   81 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK   81 (351)
T ss_dssp             CCCEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccccCcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence            4567889999999999999 7889999999999999999876    46667788999999999999  589999999999


Q ss_pred             cEEEEcCCCC---------ceEEEEecCCCCEEEEEEcCC--CCEEEEeeCCCeEEEEECCcccEEEeee----------
Q 022910          130 LVQIWDPSSG---------NLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAYLNMFS----------  188 (290)
Q Consensus       130 ~i~i~d~~~~---------~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------  188 (290)
                      .|++||+.++         +.+..+..|...|.+++|+|+  +.+|++++.||.|++||+++++.+..+.          
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence            9999999887         557778889999999999999  9999999999999999998876544332          


Q ss_pred             ---cCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCC----CEEEEEeCCC
Q 022910          189 ---GHGSSVTCGDFTPD---GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS----TLALSGSKDG  258 (290)
Q Consensus       189 ---~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg  258 (290)
                         .+...+.+++|+|+   +.+|++++.++.+.+|+...+... .+.....|...|++++|+|++    ++|++|+.||
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-EEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-eeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence               57788999999997   899999999999988888776542 222223388899999999998    8999999999


Q ss_pred             cEEEEEcCCC----------------------------------------------cEEEEEccCCCcEEEEEEecCC
Q 022910          259 SVHMVNITTG----------------------------------------------KVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       259 ~i~~wd~~~~----------------------------------------------~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .|++||++++                                              +++..+.+|...|++++|+|+|
T Consensus       241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~  318 (351)
T 3f3f_A          241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG  318 (351)
T ss_dssp             CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred             eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence            9999999875                                              6788889999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-38  Score=262.95  Aligned_cols=205  Identities=24%  Similarity=0.469  Sum_probs=190.6

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (290)
                      .....+.+|.+.|.+++|++ ++. +++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus       134 ~~~~~~~~h~~~v~~~~~~~-~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~w  211 (340)
T 1got_B          134 RVSRELAGHTGYLSCCRFLD-DNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW  211 (340)
T ss_dssp             EEEEEEECCSSCEEEEEEEE-TTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeEEEecCCCccEEEEEECC-CCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence            45667889999999999998 554 7789999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec--CCCCeEEEEEcCCCCEEEEEeCC
Q 022910          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      |+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..  +...|.+++|+|++++|++|+.|
T Consensus       212 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  291 (340)
T 1got_B          212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             ETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCC
Confidence            9999999999999999999999999999999999999999999999887776653  33579999999999999999999


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  264 (290)
                      |.|++||+.+++.+..+.+   |...|.+++|+|++.+|++|+.||.|++||
T Consensus       292 ~~i~vwd~~~~~~~~~~~~---h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          292 FNCNVWDALKADRAGVLAG---HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SEEEEEETTTCCEEEEEEC---CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CeEEEEEcccCcEeeEeec---CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999998888887   788999999999999999999999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=8.2e-39  Score=273.25  Aligned_cols=232  Identities=20%  Similarity=0.341  Sum_probs=206.1

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC----------CeeeeeeccccCCEEEEEECCCCC-EEEE
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----------GDWASEIQGHKDSVSSLAFSMDGQ-LLAS  124 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~  124 (290)
                      ......+|.+.|++++|+|+++.+|++++.+|.|++|++.+          .+....+.+|...|.+++|+|++. +|++
T Consensus       120 ~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             EEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred             EEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence            34667889999999999996578999999999999999987          567778889999999999999988 9999


Q ss_pred             EeCCCcEEEEcCCCCce-------EEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcc---cEEEeeecCCCC
Q 022910          125 GGLDGLVQIWDPSSGNL-------KCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSS  193 (290)
Q Consensus       125 ~~~dg~i~i~d~~~~~~-------~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~  193 (290)
                      ++.||.|++|++.++..       ...+..|...|.+++|+| ++.+|++++.+|.|++||++++   +.+..+..|...
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            99999999999987432       456678999999999999 6789999999999999999987   567778889999


Q ss_pred             eEEEEEcCCCC-EEEEEeCCCeEEEEcCCC-CeeeEEEeCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCC---
Q 022910          194 VTCGDFTPDGK-TICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITT---  267 (290)
Q Consensus       194 i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~---  267 (290)
                      |++++|+|++. +|++|+.||.|++||+++ ..++..+..   |...|++++|+|++. +|++++.||.|++||+..   
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~---h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~  356 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  356 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC---CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec---CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence            99999999886 688999999999999998 456777776   788999999999885 799999999999999987   


Q ss_pred             -----------CcEEEEEccCCCcEEEEEEecCC
Q 022910          268 -----------GKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       268 -----------~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                                 .+++..+.+|...|++++|+|++
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  390 (430)
T 2xyi_A          357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE  390 (430)
T ss_dssp             CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSS
T ss_pred             ccCccccccCCcceEEEcCCCCCCceEEEECCCC
Confidence                       47888889999999999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.3e-37  Score=257.00  Aligned_cols=233  Identities=26%  Similarity=0.435  Sum_probs=209.4

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-----eeeeeccccCCEEEEEECCCCCEEEEEeCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGHKDSVSSLAFSMDGQLLASGGLD  128 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  128 (290)
                      .....+|+||.+.|++|+|+|+++.+|+||+.|++|+||++.+.+     ....+.+|...|.+++|+|++++|++++.|
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            345567999999999999999768899999999999999987643     456778999999999999999999999999


Q ss_pred             CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE-EEeeecCCCCeEEEEEcCCC--CE
Q 022910          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTPDG--KT  205 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~--~~  205 (290)
                      +.|++|+............+...+..+.+++.+++|++++.|+.+++||+..... .....+|...+..++|++++  .+
T Consensus       108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            9999999999998888888888999999999999999999999999999976644 34556788999999999854  57


Q ss_pred             EEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG  285 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~  285 (290)
                      +++++.|+.|++||+++++....+..   |...|++++|+|++++|++|+.||.|++||+++++++..+..+ ..|.+++
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~  263 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHIG---HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALC  263 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCceeeEecC---CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeee
Confidence            88999999999999999998888876   7889999999999999999999999999999999999988864 6899999


Q ss_pred             EecCC
Q 022910          286 FSRSE  290 (290)
Q Consensus       286 ~s~d~  290 (290)
                      |+|++
T Consensus       264 ~~~~~  268 (340)
T 4aow_A          264 FSPNR  268 (340)
T ss_dssp             ECSSS
T ss_pred             cCCCC
Confidence            99974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.3e-38  Score=261.13  Aligned_cols=206  Identities=23%  Similarity=0.423  Sum_probs=190.9

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC--CCCEEEEEeCCCcEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ  132 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~  132 (290)
                      .....+.+|.+.|.+++|+| ++..|++++.|++|++||+.+++.+..+.+|...|.+++|+|  ++++|++|+.||.|+
T Consensus       145 ~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~  223 (354)
T 2pbi_B          145 AKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM  223 (354)
T ss_dssp             GGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred             ccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence            45677889999999999999 777889999999999999999999999999999999999987  468999999999999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC--CCCeEEEEEcCCCCEEEEEe
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~  210 (290)
                      +||+.+++++..+..|...|.+++|+|++.+|++|+.|++|++||+++.+.+..+..+  ...+.+++|+|++++|++|+
T Consensus       224 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~  303 (354)
T 2pbi_B          224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY  303 (354)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE
Confidence            9999999999999999999999999999999999999999999999998877666543  35789999999999999999


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  264 (290)
                      .|+.|++||+.+++.+..+.+   |...|++++|+|++++|++|+.||+|++|+
T Consensus       304 ~d~~i~vwd~~~~~~~~~l~~---h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          304 NDYTINVWDVLKGSRVSILFG---HENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTSCEEEEETTTCSEEEEECC---CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCcEEEEECCCCceEEEEEC---CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999998888876   788999999999999999999999999995

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1e-38  Score=270.22  Aligned_cols=234  Identities=21%  Similarity=0.397  Sum_probs=205.2

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-------eeeeeeccccCCEEEEEECCCC-CEEEEEe
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDG-QLLASGG  126 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~  126 (290)
                      .....+.+|.+.|++++|+|.++.+|++|+.||.|++|++.++       +.+..+.+|...|.+++|+|++ .+|++++
T Consensus        72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~  151 (402)
T 2aq5_A           72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG  151 (402)
T ss_dssp             TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred             CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence            4566788999999999999977789999999999999999987       5677888999999999999998 6999999


Q ss_pred             CCCcEEEEcCCCCceEEEE--ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee-ecCCCC-eEEEEEcCC
Q 022910          127 LDGLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-SGHGSS-VTCGDFTPD  202 (290)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-i~~~~~~~~  202 (290)
                      .||.|++||+.+++.+..+  ..|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|... +.++.|+|+
T Consensus       152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (402)
T 2aq5_A          152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE  231 (402)
T ss_dssp             TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST
T ss_pred             CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC
Confidence            9999999999999999998  789999999999999999999999999999999999998888 677765 899999999


Q ss_pred             CCEEEEE---eCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCcE-EEEEcc
Q 022910          203 GKTICTG---SDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSVHMVNITTGKV-VSSLVS  276 (290)
Q Consensus       203 ~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~-~~~~~~  276 (290)
                      +.+|++|   +.++.|++||++++.. .......  +...+.+++|+|++++|++ |+.||.|++|++.+++. +..+..
T Consensus       232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~  309 (402)
T 2aq5_A          232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM  309 (402)
T ss_dssp             TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE
T ss_pred             CcEEEEeccCCCCceEEEEcCccccCCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc
Confidence            9999999   7899999999998765 3333211  5678999999999999865 55799999999999883 444443


Q ss_pred             --CCCcEEEEEEecCC
Q 022910          277 --HTDSIECIGFSRSE  290 (290)
Q Consensus       277 --~~~~v~~i~~s~d~  290 (290)
                        |..+|++++|+|++
T Consensus       310 ~~~~~~v~~~~~sp~~  325 (402)
T 2aq5_A          310 FSSKESQRGMGYMPKR  325 (402)
T ss_dssp             ECCSSCCSEEEECCGG
T ss_pred             cccCCcccceEEeccc
Confidence              56899999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.9e-38  Score=289.53  Aligned_cols=234  Identities=23%  Similarity=0.331  Sum_probs=220.2

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ....+.+.+|.+.|++++|+| ++.+|++|+.+|.|++|++.+++.+..+..|..+|++++|+|++++|++++.||.|++
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v   81 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             cccceeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            456789999999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcC-CCCEEEEEeC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSD  211 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  211 (290)
                      |++.+++.+..+..|...|++++|+|++++|++++.+|.|++|+++++ .....+.+|...|.+++|+| ++.+|++++.
T Consensus        82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            999999999999999999999999999999999999999999999987 67788888999999999999 8899999999


Q ss_pred             CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      ||.|++||+.++.....+...  +...+.+++|+|  ++.+|++++.||.|++||+.+++.+..+.+|...|++++|+|+
T Consensus       162 dg~v~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~  239 (814)
T 3mkq_A          162 DRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT  239 (814)
T ss_dssp             TSEEEEEETTCSSCSEEEECC--CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred             CCeEEEEECCCCcceeEEecC--CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            999999999988887777753  457899999999  9999999999999999999999999999999999999999998


Q ss_pred             C
Q 022910          290 E  290 (290)
Q Consensus       290 ~  290 (290)
                      |
T Consensus       240 ~  240 (814)
T 3mkq_A          240 L  240 (814)
T ss_dssp             S
T ss_pred             C
Confidence            6

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.9e-37  Score=255.49  Aligned_cols=228  Identities=20%  Similarity=0.355  Sum_probs=204.9

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee---ec--cccCCEEEEEECCCCCEEEEEeCCCc
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---IQ--GHKDSVSSLAFSMDGQLLASGGLDGL  130 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~~--~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (290)
                      ......+|...|++++|+| ++.+|++++ +|.|++|++.+++....   +.  .|...|.+++|+|++++|++++.+|.
T Consensus        43 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  120 (337)
T 1gxr_A           43 RQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             ccceeccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence            3444558999999999999 778888888 99999999987653332   22  68899999999999999999999999


Q ss_pred             EEEEcCCCCc--eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE
Q 022910          131 VQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (290)
Q Consensus       131 i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  208 (290)
                      |++|++.+++  ....+..|...+.+++|+|++++|++++.+|.|++||+++++.+..+..|...|.+++|+|++++|++
T Consensus       121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  200 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence            9999999887  56677788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      ++.||.|++||+++++.+..+.    +...+.+++|+|++++|++++.+|.|++|++.+++.. .+..|...|++++|+|
T Consensus       201 ~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~  275 (337)
T 1gxr_A          201 GGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY  275 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT
T ss_pred             EecCCcEEEEECCCCceEeeec----CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECC
Confidence            9999999999999998887775    6778999999999999999999999999999988764 6778999999999999


Q ss_pred             CC
Q 022910          289 SE  290 (290)
Q Consensus       289 d~  290 (290)
                      ++
T Consensus       276 ~~  277 (337)
T 1gxr_A          276 CG  277 (337)
T ss_dssp             TS
T ss_pred             CC
Confidence            85

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.6e-37  Score=251.59  Aligned_cols=222  Identities=18%  Similarity=0.275  Sum_probs=203.4

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      +|...|.+++|+| ++.+|++++.+|.|++|++.+++  ....+..|...|.+++|+|++++|++++.+|.|++||+.++
T Consensus        95 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~  173 (337)
T 1gxr_A           95 NRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ  173 (337)
T ss_dssp             CTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            8999999999999 77889999999999999999877  56677889999999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910          140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (290)
Q Consensus       140 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  219 (290)
                      +.+..+..|...+.+++|+|++++|++++.+|.|++||+++++.+..+. +...+.+++|+|++++|++++.++.|++||
T Consensus       174 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~  252 (337)
T 1gxr_A          174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLH  252 (337)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            9999999999999999999999999999999999999999998887775 678899999999999999999999999999


Q ss_pred             CCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +++++.. .+..   |...+.+++|+|++++|++++.||.|++|++.+++.+... .|...|++++|+|++
T Consensus       253 ~~~~~~~-~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~  318 (337)
T 1gxr_A          253 VNKPDKY-QLHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD  318 (337)
T ss_dssp             TTSSCEE-EECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTS
T ss_pred             CCCCCeE-EEcC---CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCC
Confidence            9987754 3433   7889999999999999999999999999999999988554 478899999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.1e-39  Score=274.03  Aligned_cols=222  Identities=17%  Similarity=0.190  Sum_probs=189.6

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee--eeeeccccCCEEEEEECC-CCCEEEEEeCCCcEE
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQ  132 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~  132 (290)
                      ......+|...|+||+|+|.++.+||+|+.||.|+|||+.++..  ...+.+|.+.|++|+|+| ++++|++++.||+|+
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            34556788999999999998888999999999999999987654  345568999999999998 688999999999999


Q ss_pred             EEcCCCCceEEEEec--CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCC-EEEEE
Q 022910          133 IWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTG  209 (290)
Q Consensus       133 i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  209 (290)
                      +||+.++........  +...+.+++|+|++.+|++|+.+|.|++||++. +.+..+.+|...|.+++|+|++. +|+++
T Consensus       191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred             EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEe
Confidence            999987654433333  334678999999999999999999999999974 55777889999999999999875 78899


Q ss_pred             eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910          210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  278 (290)
                      +.|+.|++||+++.+....+.....|...|++++|+|++++|++++.||.|++||+.+++....+..|.
T Consensus       270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~  338 (435)
T 4e54_B          270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP  338 (435)
T ss_dssp             ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred             cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence            999999999999877655554444588899999999999999999999999999999998888777654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.4e-37  Score=261.47  Aligned_cols=219  Identities=18%  Similarity=0.238  Sum_probs=193.3

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--cccCCEEEEEECC-CCCEEEEEeCCC
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSM-DGQLLASGGLDG  129 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg  129 (290)
                      +......+.+|...|++++|+|++..+|++|+.||.|++|++.+++....+.  +|...|.+++|+| ++++|++++.|+
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            3556778899999999999999444899999999999999999887776665  6999999999999 678999999999


Q ss_pred             cEEEEcCCCCceEEEEecC---CCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCC-E
Q 022910          130 LVQIWDPSSGNLKCTLEGP---GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-T  205 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  205 (290)
                      .|++||+.+ ..+..+..+   ...|.+++|+|++++|++++.+|.|++||+ +++.+..+..|...|.+++|+|+++ +
T Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence            999999986 455555444   378999999999999999999999999999 5778888999999999999999998 9


Q ss_pred             EEEEeCCCeEEEEcCCC----CeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910          206 ICTGSDDATLRVWNPKS----GENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  277 (290)
                      |++++.|+.|++||+++    +..+..+.    |...|++++|+| ++.+|++++.|+.|++||+++++.+..+..|
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  292 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEMP----HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH  292 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEEE----CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEec----CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence            99999999999999997    55555553    788999999999 9999999999999999999998877777655

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.2e-38  Score=265.03  Aligned_cols=235  Identities=19%  Similarity=0.235  Sum_probs=210.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCC----C---cEEEEecCCCcEEEEEccCCee-----eeeeccc-----cCCEEEEEEC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTD----A---TLVATGGGDDKGFFWRINQGDW-----ASEIQGH-----KDSVSSLAFS  116 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~----~---~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~-----~~~i~~~~~~  116 (290)
                      ...+..+.+|...|++++|+| +    +   .+|++++.||.|++|++.+++.     ...+..|     ...|.+++|+
T Consensus        52 ~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  130 (397)
T 1sq9_A           52 KDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG  130 (397)
T ss_dssp             GGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEE
T ss_pred             CCcceEEecCCCcEEEEEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEe
Confidence            457888999999999999999 6    7   8999999999999999998876     7788888     5999999999


Q ss_pred             ----CCCCE-EEEEeCCCcEEEEcCCC------CceEE-----EEe-------cCCCCEEEEEEcCCCCEEEEeeCCCeE
Q 022910          117 ----MDGQL-LASGGLDGLVQIWDPSS------GNLKC-----TLE-------GPGGGVEWVSWHPRGHIVLAGSEDSTV  173 (290)
Q Consensus       117 ----~~~~~-l~~~~~dg~i~i~d~~~------~~~~~-----~~~-------~~~~~i~~i~~~~~~~~l~~~~~dg~i  173 (290)
                          |++++ |++++.+|.|++||+.+      ++.+.     .+.       .|...|.+++|+|++ +|++++.+|.|
T Consensus       131 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i  209 (397)
T 1sq9_A          131 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV  209 (397)
T ss_dssp             CCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred             eccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence                99999 99999999999999998      66655     663       478889999999999 99999999999


Q ss_pred             EEEECCcccEEEeeec---C---CCCeEEEEEcCCCCEEEEEeCC---CeEEEEcCCCCeeeEEEeCCC----------C
Q 022910          174 WMWNADRAAYLNMFSG---H---GSSVTCGDFTPDGKTICTGSDD---ATLRVWNPKSGENIHVIRGHP----------Y  234 (290)
Q Consensus       174 ~i~d~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~----------~  234 (290)
                      ++||+++++.+..+..   |   ...|.+++|+|++++|++++.|   |.|++||+++++.+..+....          .
T Consensus       210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (397)
T 1sq9_A          210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA  289 (397)
T ss_dssp             EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred             EEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence            9999999999999998   8   9999999999999999999999   999999999998888776511          1


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc------cC---------------CCcEEEEEEecCC
Q 022910          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV------SH---------------TDSIECIGFSRSE  290 (290)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------~~---------------~~~v~~i~~s~d~  290 (290)
                      |...|.+++|+|++++|++++.||.|++||+.+++++..+.      +|               ..+|++++|+|+|
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            57889999999999999999999999999999999999999      88               9999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.7e-37  Score=278.82  Aligned_cols=231  Identities=21%  Similarity=0.360  Sum_probs=204.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ....+.+.+|...|.+++|+| ++.+|++|+.||+|+|||+.+++....+.+|...|.+++|+|++++|++++.|++|++
T Consensus       420 ~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  498 (694)
T 3dm0_A          420 GVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKL  498 (694)
T ss_dssp             CEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             ccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence            345678999999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCceEEEE---ecCCCCEEEEEEcCCC--CEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE
Q 022910          134 WDPSSGNLKCTL---EGPGGGVEWVSWHPRG--HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (290)
Q Consensus       134 ~d~~~~~~~~~~---~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  208 (290)
                      ||+.........   .+|...|.+++|+|++  ..|++++.|+.|++||+++++....+.+|...|++++|+|++++|++
T Consensus       499 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s  578 (694)
T 3dm0_A          499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS  578 (694)
T ss_dssp             ECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence            998755433332   3577789999999986  58999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC----------
Q 022910          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT----------  278 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----------  278 (290)
                      ++.||.|++||+++++.+..+.    +...+.+++|+|++.+|++++ ++.|++||+.+++.+..+..+.          
T Consensus       579 g~~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  653 (694)
T 3dm0_A          579 GGKDGVVLLWDLAEGKKLYSLE----ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNS  653 (694)
T ss_dssp             EETTSBCEEEETTTTEEEECCB----CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC---------
T ss_pred             EeCCCeEEEEECCCCceEEEec----CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccc
Confidence            9999999999999998876665    456799999999998887765 5669999999999988876432          


Q ss_pred             ---------CcEEEEEEecCC
Q 022910          279 ---------DSIECIGFSRSE  290 (290)
Q Consensus       279 ---------~~v~~i~~s~d~  290 (290)
                               -.+++++|||+|
T Consensus       654 ~~~~~~~~~~~~~~l~~spdg  674 (694)
T 3dm0_A          654 GPAATKRKVIYCTSLNWSADG  674 (694)
T ss_dssp             -------CCCCEEEEEECTTS
T ss_pred             ccccCCceeEEeeeEEEcCCC
Confidence                     137899999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.8e-37  Score=270.34  Aligned_cols=230  Identities=33%  Similarity=0.579  Sum_probs=210.2

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      ........+.+|...|.+++|+| ++.+|++++.|+.|++|++.. ..+..+.+|...|.+++|+|++++|++++.+|.|
T Consensus       291 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  368 (577)
T 2ymu_A          291 RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV  368 (577)
T ss_dssp             TTSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCCcEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence            34567788899999999999999 788999999999999999765 4456678899999999999999999999999999


Q ss_pred             EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC
Q 022910          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  211 (290)
                      ++|+. +++.+..+..|...|++++|+|++++|++++.|+.|++|+. +++.+..+.+|...|++++|+|++++|++++.
T Consensus       369 ~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~  446 (577)
T 2ymu_A          369 KLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASD  446 (577)
T ss_dssp             EEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcC
Confidence            99995 57788889999999999999999999999999999999995 56778888999999999999999999999999


Q ss_pred             CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      |+.|++||+ +++.+..+..   |...|++++|+|++++|++++.|+.|++|+. +++++..+.+|...|++++|+|+|
T Consensus       447 d~~v~~w~~-~~~~~~~~~~---~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg  520 (577)
T 2ymu_A          447 DKTVKLWNR-NGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG  520 (577)
T ss_dssp             TSEEEEEET-TSCEEEEEEC---CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTS
T ss_pred             CCEEEEEEC-CCCEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCC
Confidence            999999996 5666677776   7889999999999999999999999999995 789999999999999999999986

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.6e-38  Score=265.32  Aligned_cols=232  Identities=15%  Similarity=0.208  Sum_probs=207.8

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe------eeeeeccccCCEEEEEECCC----C---CE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD------WASEIQGHKDSVSSLAFSMD----G---QL  121 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~i~~~~~~~~----~---~~  121 (290)
                      .....+.+|.+.|++++|+|   .+|++|+.||.|++|++.+++      ....+..|...|.+++|+|+    +   ++
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            45677889999999999998   689999999999999999887      77888899999999999999    9   99


Q ss_pred             EEEEeCCCcEEEEcCCCCce-----EEEEecC-----CCCEEEEEEc----CCCCE-EEEeeCCCeEEEEECCc------
Q 022910          122 LASGGLDGLVQIWDPSSGNL-----KCTLEGP-----GGGVEWVSWH----PRGHI-VLAGSEDSTVWMWNADR------  180 (290)
Q Consensus       122 l~~~~~dg~i~i~d~~~~~~-----~~~~~~~-----~~~i~~i~~~----~~~~~-l~~~~~dg~i~i~d~~~------  180 (290)
                      |++++.||.|++|++.+++.     ...+..|     ...|.+++|+    |++++ |++++.+|.|++||+++      
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            99999999999999998887     8888888     4889999999    99999 99999999999999998      


Q ss_pred             ccEEE-----ee-------ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCc---ccCeEEEEEc
Q 022910          181 AAYLN-----MF-------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH---TEGLTCLTIS  245 (290)
Q Consensus       181 ~~~~~-----~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~v~~~~~~  245 (290)
                      ++.+.     .+       ..|...|.+++|+|++ +|++++.||.|++||+++++.+..+.....|   ...|.+++|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence            66555     66       3488899999999999 9999999999999999999988888762224   7889999999


Q ss_pred             CCCCEEEEEeCC---CcEEEEEcCCCcEEEEEcc-------------CCCcEEEEEEecCC
Q 022910          246 ADSTLALSGSKD---GSVHMVNITTGKVVSSLVS-------------HTDSIECIGFSRSE  290 (290)
Q Consensus       246 ~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~-------------~~~~v~~i~~s~d~  290 (290)
                      |++++|++++.|   |.|++||+++++++..+..             |...|++++|+|++
T Consensus       243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  303 (397)
T 1sq9_A          243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG  303 (397)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence            999999999999   9999999999999999998             99999999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-37  Score=259.82  Aligned_cols=225  Identities=22%  Similarity=0.386  Sum_probs=197.5

Q ss_pred             eccCCcCEEEEEECCCCCc-EEEEecCCCcEEEEEc----cCCe------eeeeecc----------ccCCEEEEEECCC
Q 022910           60 FSGHSDEVYSVACSPTDAT-LVATGGGDDKGFFWRI----NQGD------WASEIQG----------HKDSVSSLAFSMD  118 (290)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~-~l~~~~~dg~i~iw~~----~~~~------~~~~~~~----------~~~~i~~~~~~~~  118 (290)
                      ...|.++|++++|+| ++. +|++|+.||.|++|++    .+++      ....+..          |...|++++|+|+
T Consensus        41 ~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             EEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred             eeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence            344569999999999 566 9999999999999999    8777      3444443          6779999999999


Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE-------------
Q 022910          119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-------------  185 (290)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------------  185 (290)
                      +++|++++.+|.|++|+ .+++.+..+..|...|.+++|+|++++|++++.+|.|++||+++++.+.             
T Consensus       120 ~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  198 (425)
T 1r5m_A          120 GNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN  198 (425)
T ss_dssp             SSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred             CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence            99999999999999999 6778888999999999999999999999999999999999998765433             


Q ss_pred             -------------------------------------------eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910          186 -------------------------------------------MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (290)
Q Consensus       186 -------------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  222 (290)
                                                                 .+..|...|.+++|+|++++|++++.||.|++||+++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  278 (425)
T 1r5m_A          199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN  278 (425)
T ss_dssp             -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred             eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence                                                       2335678899999999999999999999999999999


Q ss_pred             CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ++....+..   |...+.+++|+|++ +|++++.||.|++||+++++++..+..|...|++++|+|+|
T Consensus       279 ~~~~~~~~~---~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~  342 (425)
T 1r5m_A          279 GNSQNCFYG---HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG  342 (425)
T ss_dssp             BSCSEEECC---CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS
T ss_pred             CccceEecC---CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC
Confidence            988888876   77899999999999 99999999999999999999999999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1e-37  Score=259.23  Aligned_cols=234  Identities=15%  Similarity=0.275  Sum_probs=200.6

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecC---CCcEEEEEccCCeeeeee-ccccCCEEEEEECCC---CCEEEEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMD---GQLLASG  125 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~---~~~l~~~  125 (290)
                      |......+.+|...|++++|+|++..++++|+.   ||.|++|++.+++..... ..|...|.+++|+|+   +++|+++
T Consensus         7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~   86 (357)
T 3i2n_A            7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG   86 (357)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred             hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence            444556678999999999999966678888876   999999999988765443 368999999999998   6999999


Q ss_pred             eCCCcEEEEcCCCCc-eEEEEecCCCCEEEEEE------cCCCCEEEEeeCCCeEEEEECCccc-EEEeeecCCC----C
Q 022910          126 GLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSW------HPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGS----S  193 (290)
Q Consensus       126 ~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~------~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~----~  193 (290)
                      +.||.|++|++.+++ .+..+..|...|.++.|      +|++++|++++.||.|++||++++. .+..+..+..    .
T Consensus        87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (357)
T 3i2n_A           87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD  166 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred             cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence            999999999999988 88899999999999954      6789999999999999999999886 6777765544    8


Q ss_pred             eEEEE----EcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC---CCCEEEEEeCCCcEEEEEcC
Q 022910          194 VTCGD----FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA---DSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       194 i~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~wd~~  266 (290)
                      +.+++    |+|++++|++++.||.|++||+++++......    +...|.+++|+|   ++.+|++++.||.|++||++
T Consensus       167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  242 (357)
T 3i2n_A          167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN----IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR  242 (357)
T ss_dssp             EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred             eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC----CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence            89998    78899999999999999999999988755544    678999999999   99999999999999999998


Q ss_pred             CCcEEEEE-----ccCCCcEEEEEEecCC
Q 022910          267 TGKVVSSL-----VSHTDSIECIGFSRSE  290 (290)
Q Consensus       267 ~~~~~~~~-----~~~~~~v~~i~~s~d~  290 (290)
                      +++.+..+     .+|...|++++|+|++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  271 (357)
T 3i2n_A          243 TQHPTKGFASVSEKAHKSTVWQVRHLPQN  271 (357)
T ss_dssp             EEETTTEEEEEEEECCSSCEEEEEEETTE
T ss_pred             CCCcccceeeeccCCCcCCEEEEEECCCC
Confidence            77654444     4899999999999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.7e-38  Score=263.44  Aligned_cols=216  Identities=23%  Similarity=0.426  Sum_probs=192.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee-----ccccCCEEEEEECC-CCCEEEEEeC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-----QGHKDSVSSLAFSM-DGQLLASGGL  127 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~~~l~~~~~  127 (290)
                      ......+.+|.+.|.+++|.|.++..|++|+.|++|++||+.+++.+..+     .+|...|.+++|++ ++++|++|+.
T Consensus       147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~  226 (380)
T 3iz6_a          147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC  226 (380)
T ss_dssp             STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET
T ss_pred             ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC
Confidence            34566789999999999999977778999999999999999999888766     57899999999987 7889999999


Q ss_pred             CCcEEEEcCC-CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCC-------CCeEEEEE
Q 022910          128 DGLVQIWDPS-SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-------SSVTCGDF  199 (290)
Q Consensus       128 dg~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~  199 (290)
                      |++|++||++ .++.+..+.+|.+.|.+++|+|++++|++|+.||+|++||+++++.+..+..+.       ..|++++|
T Consensus       227 D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  306 (380)
T 3iz6_a          227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF  306 (380)
T ss_dssp             TSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred             CCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence            9999999997 557788899999999999999999999999999999999999998887776533       24899999


Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCC-CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 022910          200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (290)
Q Consensus       200 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  269 (290)
                      +|++++|++|+.||.|++||+.+++.+..+... ..|...|++++|+|++++|++|+.||+|++|++...+
T Consensus       307 s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          307 SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            999999999999999999999998887777432 3488899999999999999999999999999987654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.9e-38  Score=265.60  Aligned_cols=233  Identities=19%  Similarity=0.298  Sum_probs=200.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ......+.+|.+.|++++|+| ++.+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus       129 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i  207 (420)
T 3vl1_A          129 NLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL  207 (420)
T ss_dssp             CEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            445566689999999999999 7789999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCceEEEEec---CCCCEEE---------------------EEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-
Q 022910          134 WDPSSGNLKCTLEG---PGGGVEW---------------------VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-  188 (290)
Q Consensus       134 ~d~~~~~~~~~~~~---~~~~i~~---------------------i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  188 (290)
                      ||+.+++.+..+..   +...+.+                     ++|+|++++|++|+.+|.|++||+++++.+..+. 
T Consensus       208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  287 (420)
T 3vl1_A          208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS  287 (420)
T ss_dssp             EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence            99999998888875   3334444                     4557899999999999999999999988776664 


Q ss_pred             cCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          189 GHGSSVTCGDFTPDGK-TICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       189 ~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      .|...|.+++|+|++. +|++++.||.|++||+++++. +..+..+  +...++++.+ +++++|++++.||.|++|++.
T Consensus       288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN--EGTPINNVYF-AAGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES--TTSCEEEEEE-ETTEEEEEETTTEEEEEEEEC
T ss_pred             ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc--CCCCceEEEe-CCCCEEEEecCCccEEEEecc
Confidence            4788999999999998 999999999999999998754 5666653  5677888865 478899999999999999987


Q ss_pred             CC---------cEEEEEccCCCcEEEEEEecCC
Q 022910          267 TG---------KVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       267 ~~---------~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ..         .....+..|.+.|.+++|+|++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  397 (420)
T 3vl1_A          365 DPESERPAIEFETPTFLVSNDDAVSQFCYVSDD  397 (420)
T ss_dssp             CTTCCSCEECTTSCEEECCSSCCCCEEEEECCS
T ss_pred             CCCCCccceeccCccEEccCCcceEEEEEccCC
Confidence            63         2233466788999999999986

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1e-36  Score=290.81  Aligned_cols=236  Identities=25%  Similarity=0.382  Sum_probs=218.3

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ......+.+|.+.|++++|+| ++.+|++|+.||+|++|++.+++.+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus       605 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v  683 (1249)
T 3sfz_A          605 NLSRLVVRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI  683 (1249)
T ss_dssp             CCCSEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ccceEEEecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence            445667899999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcC--CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  211 (290)
                      ||+.+++.+..+..|...|.+++|+|  ++.++++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.
T Consensus       684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  763 (1249)
T 3sfz_A          684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA  763 (1249)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred             EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence            99999999999999999999999999  5568999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEcCCCCeeeEEEeCC----------------------------------------------------CCcccCe
Q 022910          212 DATLRVWNPKSGENIHVIRGH----------------------------------------------------PYHTEGL  239 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~----------------------------------------------------~~~~~~v  239 (290)
                      ||.|++||+.+++....+...                                                    ..|...+
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v  843 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI  843 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence            999999999877655443211                                                    1356788


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       240 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .+++|+|+++++++++.+|.|++|++.+++.+..+.+|.+.|++++|+|+|
T Consensus       844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg  894 (1249)
T 3sfz_A          844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG  894 (1249)
T ss_dssp             CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC
Confidence            999999999999999999999999999999999999999999999999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-36  Score=256.40  Aligned_cols=229  Identities=20%  Similarity=0.325  Sum_probs=204.5

Q ss_pred             Cceeeecc-CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           55 DSTHIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        55 ~~~~~~~~-h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      .....+.. |...|++++|+| ++.+|++|+.||.|++|++.+++.+..+..|...|.+++|  ++++|++++.||.|++
T Consensus       124 ~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i  200 (401)
T 4aez_A          124 SVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHH  200 (401)
T ss_dssp             CEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred             cEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEE
Confidence            33444444 899999999999 7889999999999999999999999999999999999999  5679999999999999


Q ss_pred             EcCC-CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC-CEEEEEe-
Q 022910          134 WDPS-SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGS-  210 (290)
Q Consensus       134 ~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-  210 (290)
                      ||+. ....+..+..|.+.|.+++|+|++++|++|+.||.|++||+++++.+..+..|...|.+++|+|++ .++++++ 
T Consensus       201 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred             EecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence            9998 566778888999999999999999999999999999999999999999999999999999999966 5556654 


Q ss_pred             -CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCcEEE--EEccCCCcEEEEE
Q 022910          211 -DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG--SKDGSVHMVNITTGKVVS--SLVSHTDSIECIG  285 (290)
Q Consensus       211 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~i~  285 (290)
                       .|+.|++||+++++.+..+.    +...+.+++|+|++++|+++  +.||.|++|++.+++...  .+.+|...|++++
T Consensus       281 s~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~  356 (401)
T 4aez_A          281 TMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA  356 (401)
T ss_dssp             TTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEE
Confidence             69999999999999888886    56789999999999999994  489999999999976554  4678999999999


Q ss_pred             EecCC
Q 022910          286 FSRSE  290 (290)
Q Consensus       286 ~s~d~  290 (290)
                      |+|+|
T Consensus       357 ~s~dg  361 (401)
T 4aez_A          357 LSPDG  361 (401)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            99986

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-36  Score=246.27  Aligned_cols=227  Identities=22%  Similarity=0.357  Sum_probs=205.2

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      +.+..+.+.+|.+.|++++| | ++.+|++|+.||.|++|++.+++....+..|...|.+++|+|++++|++++.+|.|+
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            45778899999999999999 7 777899999999999999999998999999999999999999999999999999999


Q ss_pred             EEcCCCC---ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC-CCCEEEE
Q 022910          133 IWDPSSG---NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICT  208 (290)
Q Consensus       133 i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  208 (290)
                      +|++...   +.+..+..|...|.++.|  ++++|++++.+|.|++||  .++.+..+..|...+.+++|+| ++++|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            9998654   566778889999999999  577999999999999999  6777888888999999999998 8999999


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      ++.||.|++||  ..+....+...  +...+.+++|+|++. |++++.||.|++||+++++++..+.+|.+.|++++|+|
T Consensus       161 ~~~d~~i~i~d--~~~~~~~~~~~--~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  235 (313)
T 3odt_A          161 ASADKTIKLWQ--NDKVIKTFSGI--HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP  235 (313)
T ss_dssp             EETTSCEEEEE--TTEEEEEECSS--CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred             EECCCCEEEEe--cCceEEEEecc--CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec
Confidence            99999999999  34555555543  678899999999988 88999999999999999999999999999999999999


Q ss_pred             CC
Q 022910          289 SE  290 (290)
Q Consensus       289 d~  290 (290)
                      +|
T Consensus       236 ~~  237 (313)
T 3odt_A          236 NG  237 (313)
T ss_dssp             TS
T ss_pred             CC
Confidence            85

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-37  Score=259.60  Aligned_cols=223  Identities=19%  Similarity=0.306  Sum_probs=199.0

Q ss_pred             CCcCEEEEEECCCC---CcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC-CCCEEEEEeCCCcEEEEcCCC
Q 022910           63 HSDEVYSVACSPTD---ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSS  138 (290)
Q Consensus        63 h~~~v~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~  138 (290)
                      |...|++++|+|+.   +.+|++|+.||.|++|++.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            56789999999942   57999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             CceEEEE---ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee---------------------------
Q 022910          139 GNLKCTL---EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS---------------------------  188 (290)
Q Consensus       139 ~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------------------  188 (290)
                      ++.+..+   ..|...|.+++|+|++++|++++.||.|++||+++++....+.                           
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            9998888   6789999999999999999999999999999999876544333                           


Q ss_pred             -cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee--------------eEEEeCCCCcccCeEEEEEcCC--CCEE
Q 022910          189 -GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN--------------IHVIRGHPYHTEGLTCLTISAD--STLA  251 (290)
Q Consensus       189 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~--~~~l  251 (290)
                       .|...|.+++|+  +++|++++.||.|++||++++..              +..+..   |...|++++|+|+  +++|
T Consensus       228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l  302 (366)
T 3k26_A          228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY---SQCDIWYMRFSMDFWQKML  302 (366)
T ss_dssp             SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC---SSCCSSCCCCEECTTSSEE
T ss_pred             cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc---cCCcEEEEEEcCCCCCcEE
Confidence             388999999998  77999999999999999987643              445554   7788999999999  9999


Q ss_pred             EEEeCCCcEEEEEcCCCc----EEEEEccC--CCcEEEEEEecCC
Q 022910          252 LSGSKDGSVHMVNITTGK----VVSSLVSH--TDSIECIGFSRSE  290 (290)
Q Consensus       252 ~~~~~dg~i~~wd~~~~~----~~~~~~~~--~~~v~~i~~s~d~  290 (290)
                      ++|+.||.|++||+.+++    .+..+..|  ...|++++|+|+|
T Consensus       303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  347 (366)
T 3k26_A          303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS  347 (366)
T ss_dssp             EEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred             EEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence            999999999999999875    55678887  7899999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.7e-36  Score=253.43  Aligned_cols=236  Identities=16%  Similarity=0.323  Sum_probs=205.6

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-------------cccCCEEEEEECC-CC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-------------GHKDSVSSLAFSM-DG  119 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~i~~~~~~~-~~  119 (290)
                      ......+.+|.+.|++++|+|.++.+|++|+.||.|++|++.++.....+.             +|...|.+++|+| ++
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  112 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT  112 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred             CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence            456778899999999999999667889999999999999999876555443             5999999999999 77


Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCC---CEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEE
Q 022910          120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG---HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC  196 (290)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  196 (290)
                      .+|++++.||.|++|++.+++....+. +...+.++.|+|.+   .++++++.+|.|++||+++++.+..+..|...|.+
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~  191 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA  191 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred             cEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence            799999999999999999999888877 66779999999854   49999999999999999999999999999999999


Q ss_pred             EEEcCCCC-EEEEEeCCCeEEEEcCCCCe-eeEEEeCC------------CCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910          197 GDFTPDGK-TICTGSDDATLRVWNPKSGE-NIHVIRGH------------PYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (290)
Q Consensus       197 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  262 (290)
                      ++|+|++. +|++++.||.|++||++++. .+..+...            ..|...|.+++|+|++++|++++.||.|++
T Consensus       192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence            99999988 58899999999999998775 33333211            237788999999999999999999999999


Q ss_pred             EEcCCC-----------------------------------------------cEEEEEccCCCcEEEEEEecCC
Q 022910          263 VNITTG-----------------------------------------------KVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       263 wd~~~~-----------------------------------------------~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ||+.++                                               +++..+.+|.+.|++++|+|++
T Consensus       272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~  346 (408)
T 4a11_B          272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF  346 (408)
T ss_dssp             EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT
T ss_pred             EECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC
Confidence            998653                                               5677888899999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.6e-37  Score=248.28  Aligned_cols=212  Identities=19%  Similarity=0.291  Sum_probs=182.4

Q ss_pred             CceeeeccCCcCEEEEEECCC-CCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCC--CCEEEEEeCCC
Q 022910           55 DSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMD--GQLLASGGLDG  129 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg  129 (290)
                      ..+..+.+|.++|++++|+|. .+.+|++|+.|++|++|++.+++  .+..+..|...|.+++|+|+  +.+|++++.|+
T Consensus        44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~  123 (297)
T 2pm7_B           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG  123 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC
Confidence            567899999999999999873 47899999999999999998874  45667789999999999997  88999999999


Q ss_pred             cEEEEcCCCCc--eEEEEecCCCCEEEEEEcCC-------------CCEEEEeeCCCeEEEEECCccc----EEEeeecC
Q 022910          130 LVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPR-------------GHIVLAGSEDSTVWMWNADRAA----YLNMFSGH  190 (290)
Q Consensus       130 ~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~  190 (290)
                      .|++|++.++.  ....+..|...|.+++|+|+             +++|++|+.|+.|++||+++++    ....+.+|
T Consensus       124 ~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H  203 (297)
T 2pm7_B          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (297)
T ss_dssp             EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence            99999998763  24567789999999999996             5799999999999999998765    56778899


Q ss_pred             CCCeEEEEEcCCC---CEEEEEeCCCeEEEEcCCCCee--eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          191 GSSVTCGDFTPDG---KTICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       191 ~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      ...|.+++|+|++   .+|++++.|++|++||+++...  .........+...|.+++|+|++++|++++.||.|++|+.
T Consensus       204 ~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            9999999999984   8999999999999999986431  1222212236788999999999999999999999999998


Q ss_pred             C
Q 022910          266 T  266 (290)
Q Consensus       266 ~  266 (290)
                      .
T Consensus       284 ~  284 (297)
T 2pm7_B          284 N  284 (297)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-37  Score=264.02  Aligned_cols=225  Identities=17%  Similarity=0.310  Sum_probs=202.6

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC----CeeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcC
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDP  136 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~  136 (290)
                      .|...|++++|+| ++.+|++|+.||.|++|++..    .+.+..+..|...|.+++|+|+ +++|++++.||.|++||+
T Consensus        65 ~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           65 QVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             ecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            5899999999999 778899999999999999987    4577888899999999999998 889999999999999999


Q ss_pred             CCCc------eEEE---EecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeeecC------CCCeEEEEEc
Q 022910          137 SSGN------LKCT---LEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGH------GSSVTCGDFT  200 (290)
Q Consensus       137 ~~~~------~~~~---~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~  200 (290)
                      .+++      ....   +..|...|.+++|+|+ +.+|++++.+|.|++||+++++.+..+..+      ...|.+++|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence            9886      3322   3568889999999998 789999999999999999999988888776      7899999999


Q ss_pred             CCC-CEEEEEeCCC---eEEEEcCCCC-eeeEEEe-CCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 022910          201 PDG-KTICTGSDDA---TLRVWNPKSG-ENIHVIR-GHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSS  273 (290)
Q Consensus       201 ~~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~  273 (290)
                      |++ .+|++++.++   .|++||++++ .....+. .   |...|++++|+| ++++|++++.||.|++||+.+++++..
T Consensus       224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~  300 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG---HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ  300 (416)
T ss_dssp             SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC---CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE
T ss_pred             CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC---ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee
Confidence            987 6899999998   9999999986 4444444 3   788999999999 999999999999999999999999999


Q ss_pred             EccCCCcEEEEEEecCC
Q 022910          274 LVSHTDSIECIGFSRSE  290 (290)
Q Consensus       274 ~~~~~~~v~~i~~s~d~  290 (290)
                      +..|...|++++|+|++
T Consensus       301 ~~~~~~~v~~~~~s~~~  317 (416)
T 2pm9_A          301 FPARGNWCFKTKFAPEA  317 (416)
T ss_dssp             EECSSSCCCCEEECTTC
T ss_pred             ecCCCCceEEEEECCCC
Confidence            99999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-38  Score=271.90  Aligned_cols=205  Identities=13%  Similarity=0.120  Sum_probs=178.9

Q ss_pred             eeeccCCcCEEEEEECCC-----CCcEEEEecCCCcEEEEEccCCee-----------eeeeccccCCEEEEEECCCCCE
Q 022910           58 HIFSGHSDEVYSVACSPT-----DATLVATGGGDDKGFFWRINQGDW-----------ASEIQGHKDSVSSLAFSMDGQL  121 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~  121 (290)
                      ..+.+|.+.|.+++|+|.     ++.+||+++.||+|++|++..+..           ...+.+|...|++++|+++ ..
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TT  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SE
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-Ce
Confidence            456788999999999994     257999999999999999986532           2356789999999999986 48


Q ss_pred             EEEEeCCCcEEEEcCCCC-ceEEEEecCCCCEEEE--EEcCCC-CEEEEeeCCCeEEEEECCcccEEEeeecCCC--CeE
Q 022910          122 LASGGLDGLVQIWDPSSG-NLKCTLEGPGGGVEWV--SWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGS--SVT  195 (290)
Q Consensus       122 l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~  195 (290)
                      |++|+.||+|++||+.++ .+...+..|...|.++  +|+|++ .+|++|+.|++|++||+++++++..+.+|..  .|.
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence            999999999999999976 4456788999999999  578887 8999999999999999999887766666543  588


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       196 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      +++|+|++..|++++.|++|++||++++.++..+.+   |...|++++|+|++++|++|+.||+|++|++.
T Consensus       360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g---H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS---RETTITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE---CSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             ceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec---CCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            999999999999999999999999999988777776   88999999999999999999999999999853

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-37  Score=258.98  Aligned_cols=233  Identities=17%  Similarity=0.272  Sum_probs=214.5

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCC---------------EEEEEEC
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS---------------VSSLAFS  116 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~---------------i~~~~~~  116 (290)
                      .....+..+.+|...|.+++|+| ++.+|++++.+|.|++|++.+++.+..+..+...               +.++.|+
T Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (425)
T 1r5m_A          137 KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV  215 (425)
T ss_dssp             TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE
T ss_pred             CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc
Confidence            45677888999999999999999 7788999999999999999999998888877776               8999999


Q ss_pred             CCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEE
Q 022910          117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC  196 (290)
Q Consensus       117 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  196 (290)
                      |++ .+++++.+|.|++|++.+++.+..+..|...|.+++|+|++++|++++.+|.|++||+++++.+..+..|...|.+
T Consensus       216 ~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  294 (425)
T 1r5m_A          216 DDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVS  294 (425)
T ss_dssp             ETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEE
T ss_pred             CCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEE
Confidence            875 5888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-------
Q 022910          197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK-------  269 (290)
Q Consensus       197 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-------  269 (290)
                      ++|+|++ +|++++.||.|++||+++++.+..+..   |...+.+++|+|++++|++++.||.|++|++.+++       
T Consensus       295 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~  370 (425)
T 1r5m_A          295 ASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV---DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY  370 (425)
T ss_dssp             EEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC---TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC------
T ss_pred             EEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc---CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeee
Confidence            9999999 999999999999999999998888876   67899999999999999999999999999999988       


Q ss_pred             -------------EEEEEccCCC--cEEEEEEecCC
Q 022910          270 -------------VVSSLVSHTD--SIECIGFSRSE  290 (290)
Q Consensus       270 -------------~~~~~~~~~~--~v~~i~~s~d~  290 (290)
                                   ++..+..|..  .|++++|+|++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  406 (425)
T 1r5m_A          371 GNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG  406 (425)
T ss_dssp             --------CEECCEEEEECCTTCCCCEEEEEECTTS
T ss_pred             cccccccCcccchhhhhhcCcccCCceEEEEccCCC
Confidence                         8999999976  99999999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.5e-37  Score=260.71  Aligned_cols=220  Identities=20%  Similarity=0.235  Sum_probs=194.1

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (290)
                      .+....|+| ++.+|++|+.||.|++|++.+++....+..|...|++++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus        99 ~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  177 (420)
T 3vl1_A           99 YTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL  177 (420)
T ss_dssp             EEEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred             ceEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence            344456787 7889999999999999999999988888899999999999999999999999999999999999999999


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec---CCCCeEE---------------------EEEcC
Q 022910          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG---HGSSVTC---------------------GDFTP  201 (290)
Q Consensus       146 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~---------------------~~~~~  201 (290)
                      ..|...|.+++|+|++++|++++.||.|++||+++++.+..+..   +...+.+                     ++|+|
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~  257 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT  257 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence            99999999999999999999999999999999999998888764   3334444                     45578


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCc-EEEEEcc-CC
Q 022910          202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGK-VVSSLVS-HT  278 (290)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~-~~~~~~~-~~  278 (290)
                      ++++|++++.||.|++||+++++.+..+...  |...|++++|+|++. +|++|+.||.|++||+++++ ++..+.. |.
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  335 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSK--FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG  335 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCCEEEEECCT--TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeEEcccc--cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC
Confidence            8999999999999999999999887776542  678999999999998 99999999999999999875 4777776 67


Q ss_pred             CcEEEEEEec
Q 022910          279 DSIECIGFSR  288 (290)
Q Consensus       279 ~~v~~i~~s~  288 (290)
                      ..|+++.|++
T Consensus       336 ~~v~~~~~~~  345 (420)
T 3vl1_A          336 TPINNVYFAA  345 (420)
T ss_dssp             SCEEEEEEET
T ss_pred             CCceEEEeCC
Confidence            7888886653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.4e-36  Score=278.44  Aligned_cols=233  Identities=21%  Similarity=0.315  Sum_probs=217.6

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ...+..+.+|.++|++++|+| ++.+|++|+.||.|++|++.+++.+..+.+|...|++++|+|++++|++++.||.|++
T Consensus        45 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  123 (814)
T 3mkq_A           45 QVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL  123 (814)
T ss_dssp             TEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             CceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence            557788999999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCC-ceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEeeecCC-CCeEEEEEcC--CCCEEEE
Q 022910          134 WDPSSG-NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTP--DGKTICT  208 (290)
Q Consensus       134 ~d~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~~  208 (290)
                      |++.++ .....+..|...|.+++|+| ++..|++++.+|.|++||++++.....+..+. ..+.+++|+|  ++.+|++
T Consensus       124 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  203 (814)
T 3mkq_A          124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT  203 (814)
T ss_dssp             EEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred             EECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE
Confidence            999987 66778888999999999999 88999999999999999999887777766554 8899999999  9999999


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      ++.+|.|++||+.+++.+..+..   |...|++++|+|++++|++++.||.|++||+.+++.+..+..|...|++++|+|
T Consensus       204 ~~~dg~i~~~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  280 (814)
T 3mkq_A          204 ASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (814)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECT
T ss_pred             EeCCCEEEEEECCCCcEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc
Confidence            99999999999999998888876   778999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 022910          289 SE  290 (290)
Q Consensus       289 d~  290 (290)
                      +|
T Consensus       281 ~~  282 (814)
T 3mkq_A          281 TG  282 (814)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-37  Score=265.01  Aligned_cols=235  Identities=12%  Similarity=0.171  Sum_probs=196.5

Q ss_pred             CCCCCceeee-ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC---Ce---eeeeeccccCCEEEEEECCCCCEEE
Q 022910           51 EQPDDSTHIF-SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---GD---WASEIQGHKDSVSSLAFSMDGQLLA  123 (290)
Q Consensus        51 ~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~---~~~~~~~~~~~i~~~~~~~~~~~l~  123 (290)
                      ......+..+ .+|.+.|++++|+|.++.+|++|+.||+|++|++.+   +.   ....+ .|...|.+++|+|++++|+
T Consensus        49 ~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~  127 (437)
T 3gre_A           49 NLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFA  127 (437)
T ss_dssp             GCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEE
T ss_pred             cccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEE
Confidence            4567788888 999999999999995667899999999999999977   43   22333 4899999999999999999


Q ss_pred             EEeCCCcEEEEcCC---CCceEEEEec------------CCCCEEEEE--EcCCCCEEEEeeCCCeEEEEECCcccEEEe
Q 022910          124 SGGLDGLVQIWDPS---SGNLKCTLEG------------PGGGVEWVS--WHPRGHIVLAGSEDSTVWMWNADRAAYLNM  186 (290)
Q Consensus       124 ~~~~dg~i~i~d~~---~~~~~~~~~~------------~~~~i~~i~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  186 (290)
                      +++.||.|++|++.   +++....+..            +...+.++.  +++++.+|++++.+|.|++||+++++.+..
T Consensus       128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence            99999999999994   5555443332            344566666  557899999999999999999999999999


Q ss_pred             eec--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC----CCCEEEEEeCCCcE
Q 022910          187 FSG--HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA----DSTLALSGSKDGSV  260 (290)
Q Consensus       187 ~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i  260 (290)
                      +..  |...|++++|+|++++|++|+.||.|++||+++++.+..+...  +...|++++|+|    ++.+|++|+.||.|
T Consensus       208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i  285 (437)
T 3gre_A          208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG--DHAPITHVEVCQFYGKNSVIVVGGSSKTFL  285 (437)
T ss_dssp             EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT--TCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred             EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC--CCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence            988  8899999999999999999999999999999999988877522  567899996664    67899999999999


Q ss_pred             EEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          261 HMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       261 ~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      ++||+++++++..+.+|...+..+.|+|
T Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~  313 (437)
T 3gre_A          286 TIWNFVKGHCQYAFINSDEQPSMEHFLP  313 (437)
T ss_dssp             EEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred             EEEEcCCCcEEEEEEcCCCCCccceecc
Confidence            9999999999999887654444444433

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.4e-37  Score=253.44  Aligned_cols=230  Identities=15%  Similarity=0.250  Sum_probs=199.3

Q ss_pred             eccCCcCEEEEEECCCC--CcEEEEecCCCcEEEEEccCCe-eeeeeccccCCEEEEEE------CCCCCEEEEEeCCCc
Q 022910           60 FSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRINQGD-WASEIQGHKDSVSSLAF------SMDGQLLASGGLDGL  130 (290)
Q Consensus        60 ~~~h~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~i~~~~~------~~~~~~l~~~~~dg~  130 (290)
                      ..+|..+|.+++|+|+.  +.+|++|+.||.|++|++.+++ .+..+.+|...|.++.|      +|++++|++++.||.
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            34799999999999953  6899999999999999999987 88889999999999955      688999999999999


Q ss_pred             EEEEcCCCCc-eEEEEecCCC----CEEEEE----EcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC
Q 022910          131 VQIWDPSSGN-LKCTLEGPGG----GVEWVS----WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP  201 (290)
Q Consensus       131 i~i~d~~~~~-~~~~~~~~~~----~i~~i~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  201 (290)
                      |++||+.+++ .+..+..+.+    .+.+++    |+|++++|++++.+|.|++||+++++.... ..|...|.+++|+|
T Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDR  219 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred             EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCC
Confidence            9999999887 6777766554    799998    788999999999999999999999887544 55889999999999


Q ss_pred             ---CCCEEEEEeCCCeEEEEcCCCCeeeEEEe--CCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC-------
Q 022910          202 ---DGKTICTGSDDATLRVWNPKSGENIHVIR--GHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTG-------  268 (290)
Q Consensus       202 ---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~-------  268 (290)
                         ++.+|++++.||.|++||+++++....+.  ....|...|++++|+|+++ +|++|+.||.|++||++++       
T Consensus       220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  299 (357)
T 3i2n_A          220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD  299 (357)
T ss_dssp             SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred             CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence               89999999999999999998876654443  1112788999999999998 8999999999999999754       


Q ss_pred             ------------cEEEEEccCCCcEEEEEEecCC
Q 022910          269 ------------KVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       269 ------------~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                                  +++..+.+|..+|++++|+|+|
T Consensus       300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  333 (357)
T 3i2n_A          300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK  333 (357)
T ss_dssp             TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS
T ss_pred             CCCCccccccccceeeccccCCCCeeEEEEcCCC
Confidence                        4788889999999999999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-37  Score=263.65  Aligned_cols=213  Identities=22%  Similarity=0.388  Sum_probs=192.6

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe------eeee---eccccCCEEEEEECCC-CCEEEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD------WASE---IQGHKDSVSSLAFSMD-GQLLAS  124 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~---~~~~~~~i~~~~~~~~-~~~l~~  124 (290)
                      ..+..+.+|...|++++|+|+++.+|++++.||.|++|++.+++      ....   +..|...|.+++|+|+ +.+|++
T Consensus       104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  183 (416)
T 2pm9_A          104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS  183 (416)
T ss_dssp             CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred             cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE
Confidence            47888999999999999999558899999999999999999876      3333   3678999999999998 789999


Q ss_pred             EeCCCcEEEEcCCCCceEEEEecC------CCCEEEEEEcCCC-CEEEEeeCCC---eEEEEECCcc-cEEEeee-cCCC
Q 022910          125 GGLDGLVQIWDPSSGNLKCTLEGP------GGGVEWVSWHPRG-HIVLAGSEDS---TVWMWNADRA-AYLNMFS-GHGS  192 (290)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~  192 (290)
                      ++.+|.|++||+.+++.+..+..+      ...+.+++|+|++ .+|++++.++   .|++||++++ .++..+. +|..
T Consensus       184 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~  263 (416)
T 2pm9_A          184 AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK  263 (416)
T ss_dssp             ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS
T ss_pred             EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC
Confidence            999999999999999998888876      7889999999997 6999999998   9999999986 6677777 8999


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcE
Q 022910          193 SVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKV  270 (290)
Q Consensus       193 ~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~  270 (290)
                      .|.+++|+| ++++|++++.||.|++||+++++.+..+..   |...|++++|+|++ .+|++++.||.|++|++.+++.
T Consensus       264 ~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          264 GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA---RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC---SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC---CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            999999999 999999999999999999999999888886   77889999999998 8999999999999999987653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.5e-35  Score=255.17  Aligned_cols=226  Identities=23%  Similarity=0.401  Sum_probs=205.7

Q ss_pred             CCceeeeccCCcCE-EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           54 DDSTHIFSGHSDEV-YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        54 ~~~~~~~~~h~~~v-~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      ......+.+|...| .++.+.+   .+|++|+.||.|++|++.+++.+..+.+|...|.+++|+|++ +|++|+.||+|+
T Consensus       111 ~~~~~~l~~h~~~v~~~~~~~~---~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          111 VPQRTTLRGHMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR  186 (464)
T ss_dssp             CCEEEEEECCSSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred             CcceEEEcCCCCCcEEEEEECC---CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence            34567899999885 6777753   589999999999999999999999999999999999999888 999999999999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEc--CCCCEEEEeeCCCeEEEEECCcccE-----------------------EEee
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWH--PRGHIVLAGSEDSTVWMWNADRAAY-----------------------LNMF  187 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~dg~i~i~d~~~~~~-----------------------~~~~  187 (290)
                      +||+.+++.+..+.+|...|.+++|+  +++++|++|+.||.|++||+++...                       +..+
T Consensus       187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            99999999999999999999999998  5778999999999999999987642                       4566


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       188 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      .+|...+.++  ++++++|++++.||.|++||+++++.+..+..   |...|.+++|+|++++|++|+.||.|++||+.+
T Consensus       267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            7788888876  56789999999999999999999999888876   788999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCcEEEEEEec
Q 022910          268 GKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       268 ~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      ++++..+.+|...|++++|++
T Consensus       342 ~~~~~~~~~h~~~v~~~~~~~  362 (464)
T 3v7d_B          342 GELMYTLQGHTALVGLLRLSD  362 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEECS
T ss_pred             CcEEEEEeCCCCcEEEEEEcC
Confidence            999999999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-37  Score=280.84  Aligned_cols=230  Identities=19%  Similarity=0.294  Sum_probs=198.8

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc--CCeeeeeeccccCCEEEEEECCC--CCEEEEEeCCCcEE
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--QGDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGLVQ  132 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~  132 (290)
                      +..+.+|.++|++++|+| ++.+|++|+.||.|++|++.  +++....+.+|..+|++++|+|+  +++|++|+.||.|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ------CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eeecccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            467899999999999999 77789999999999999998  55677788899999999999988  89999999999999


Q ss_pred             EEcCCCCc--eEEEEecCCCCEEEEEEcCC--CCEEEEeeCCCeEEEEECCccc--EEEeeecCCCCeEEEEEcC-----
Q 022910          133 IWDPSSGN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTP-----  201 (290)
Q Consensus       133 i~d~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-----  201 (290)
                      +|++.+++  .+..+..|...|++++|+|+  ++++++|+.||.|++||++++.  ....+..|...|.+++|+|     
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            99999987  66777889999999999999  9999999999999999998873  4456678999999999999     


Q ss_pred             --------CCCEEEEEeCCCeEEEEcCCCCe----eeEEEeCCCCcccCeEEEEEcCC---CCEEEEEeCCCcEEEEEcC
Q 022910          202 --------DGKTICTGSDDATLRVWNPKSGE----NIHVIRGHPYHTEGLTCLTISAD---STLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       202 --------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~wd~~  266 (290)
                              ++.+|++|+.||.|++||++++.    ....+..   |...|++++|+|+   +.+|++|+.||.|++||+.
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC---CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC---CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                    58999999999999999998773    3344444   7889999999999   8999999999999999998


Q ss_pred             CCc-----EEEEEccCCCcEEEEEEecCC
Q 022910          267 TGK-----VVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       267 ~~~-----~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +++     .+.....|...|++++|+|+|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg  266 (753)
T 3jro_A          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSG  266 (753)
T ss_dssp             SSSSCCBCCBSSSSCCSSCCCCEEECTTT
T ss_pred             CCCCcceeEEeccCCCCCceEEEEEcCCC
Confidence            864     334445688999999999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.9e-36  Score=251.20  Aligned_cols=207  Identities=19%  Similarity=0.266  Sum_probs=187.1

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      .+..+.+|...|.+++|+| ++.+|++++.||.|++|++.+++....  +..|...|.+++|+|++++|++++.+|.|++
T Consensus        44 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  122 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI  122 (372)
T ss_dssp             EEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred             eeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence            7888999999999999999 788999999999999999998875444  4678999999999999999999999999999


Q ss_pred             EcCCCCce---EEEE-ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC------------------cccEEEeeecCC
Q 022910          134 WDPSSGNL---KCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD------------------RAAYLNMFSGHG  191 (290)
Q Consensus       134 ~d~~~~~~---~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~  191 (290)
                      |++..+..   ...+ ..|...|.+++|+|++++|++++.+|.|++||++                  .++.+..+..|.
T Consensus       123 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (372)
T 1k8k_C          123 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  202 (372)
T ss_dssp             EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             EEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence            99988773   2333 5578899999999999999999999999999954                  678888888999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       192 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      ..|.+++|+|++++|++++.||.|++||+++++.+..+..   +...+.+++|+|++.+|++| .|+.|++|++.+
T Consensus       203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS---ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC---SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc---CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9999999999999999999999999999999998888886   67889999999999988887 899999999987

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.3e-36  Score=251.89  Aligned_cols=225  Identities=17%  Similarity=0.226  Sum_probs=192.8

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc---ccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG---HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (290)
                      .+|...|.+++|+|.++.+|++++.|+.|++|++.. .....+..   |...|.+++|+|++++|++++.|+.|++||+ 
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-  192 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-  192 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-
Confidence            479999999999997778999999999999999986 44444443   4488999999999999999999999999999 


Q ss_pred             CCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCc----ccEEEeeecCCCCeEEEEEcC-CCCEEEEEeC
Q 022910          138 SGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADR----AAYLNMFSGHGSSVTCGDFTP-DGKTICTGSD  211 (290)
Q Consensus       138 ~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  211 (290)
                      +++.+..+..|...|.+++|+|+++ +|++++.|+.|++||+++    +..+..+ .|...|.+++|+| ++.+|++++.
T Consensus       193 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~  271 (383)
T 3ei3_B          193 DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ  271 (383)
T ss_dssp             TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred             CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence            5778889999999999999999999 999999999999999998    5666666 5899999999999 9999999999


Q ss_pred             CCeEEEEcCCCCeeeEEEeCCCC----cc----------cCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc-
Q 022910          212 DATLRVWNPKSGENIHVIRGHPY----HT----------EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS-  276 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~----~~----------~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-  276 (290)
                      |+.|++||+++++....+..+..    +.          ..+..++|+|++++  +|+.||.|++||+.+++++..+.+ 
T Consensus       272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~  349 (383)
T 3ei3_B          272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP  349 (383)
T ss_dssp             SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred             CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC
Confidence            99999999998887666654321    11          33445667777766  777899999999999999999987 


Q ss_pred             -CCCcEEEEEEecCC
Q 022910          277 -HTDSIECIGFSRSE  290 (290)
Q Consensus       277 -~~~~v~~i~~s~d~  290 (290)
                       |...+..++|+|+|
T Consensus       350 ~~~~~~~~~~~s~~g  364 (383)
T 3ei3_B          350 NAAGIISLNKFSPTG  364 (383)
T ss_dssp             TBCSCCCEEEECTTS
T ss_pred             CCCceEEEEEEecCc
Confidence             45778888999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-36  Score=257.25  Aligned_cols=231  Identities=9%  Similarity=0.055  Sum_probs=199.7

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc--CCeeeeeec--cccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--QGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      .....+|.+.|++++|+|++..++++|+.||.|++|++.  +++.+..+.  .|...|.+++|+|++++|++++.+|.|+
T Consensus        95 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~  174 (450)
T 2vdu_B           95 GLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVY  174 (450)
T ss_dssp             -----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEE
Confidence            344568899999999999444446999999999999999  788777776  4668999999999999999999999999


Q ss_pred             EEcCCCCceEE----EEecCCCCEEEEEEcCC---CCEEEEeeCCCeEEEEECCcccEEEe-eecCCCCeEEEEEcCCCC
Q 022910          133 IWDPSSGNLKC----TLEGPGGGVEWVSWHPR---GHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       133 i~d~~~~~~~~----~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~  204 (290)
                      +|++.+++...    .+.+|...|++++|+|+   +++|++|+.|+.|++||+++++.+.. +.+|...|.+++|+ +++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~  253 (450)
T 2vdu_B          175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY  253 (450)
T ss_dssp             EEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred             EEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC
Confidence            99998876543    67789999999999999   99999999999999999999988777 56899999999999 999


Q ss_pred             EEEEEeCCCeEEEEcCCCCeeeEEEeCCC----------------------CcccCeEEEEEcCCCCEEEEEe-CCCcEE
Q 022910          205 TICTGSDDATLRVWNPKSGENIHVIRGHP----------------------YHTEGLTCLTISADSTLALSGS-KDGSVH  261 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~  261 (290)
                      +|++++.|+.|++||+++++.+..+....                      .....+..++|+|++++|++++ .++.|+
T Consensus       254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~  333 (450)
T 2vdu_B          254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII  333 (450)
T ss_dssp             EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence            99999999999999999999888776321                      1345789999999999999998 899999


Q ss_pred             EEEc--CCC---cEEEEEccCCCcEEEEEEecC
Q 022910          262 MVNI--TTG---KVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       262 ~wd~--~~~---~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      +|++  .++   +.+..+..| +.|++++|+|+
T Consensus       334 iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~  365 (450)
T 2vdu_B          334 ILEMSEKQKGDLALKQIITFP-YNVISLSAHND  365 (450)
T ss_dssp             EEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred             EEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence            9999  565   778888887 89999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-37  Score=267.29  Aligned_cols=226  Identities=15%  Similarity=0.094  Sum_probs=187.0

Q ss_pred             CCcCEEEEEECCCC-C-------cEEEE-------------------ecCCCcEEEEEccCCeee----eeeccccCCEE
Q 022910           63 HSDEVYSVACSPTD-A-------TLVAT-------------------GGGDDKGFFWRINQGDWA----SEIQGHKDSVS  111 (290)
Q Consensus        63 h~~~v~~~~~~~~~-~-------~~l~~-------------------~~~dg~i~iw~~~~~~~~----~~~~~~~~~i~  111 (290)
                      +.+.|.+|+|+|.. +       .+||+                   ++.|++|+||++.+++..    ..+..|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            67899999999943 1       56665                   457889999999877642    34566788999


Q ss_pred             EEEECCC------CCEEEEEeCCCcEEEEcCCCCce-----------EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEE
Q 022910          112 SLAFSMD------GQLLASGGLDGLVQIWDPSSGNL-----------KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW  174 (290)
Q Consensus       112 ~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~  174 (290)
                      +++|+|+      +.+||+++.||+|+||++.++..           ...+.+|...|++++|+++ ..|++|+.||+|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence            9999996      57999999999999999987642           2467788899999999985 4899999999999


Q ss_pred             EEECCcc-cEEEeeecCCCCeEEE--EEcCCC-CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCE
Q 022910          175 MWNADRA-AYLNMFSGHGSSVTCG--DFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL  250 (290)
Q Consensus       175 i~d~~~~-~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (290)
                      +||++++ .+...+.+|...|.++  +|+|++ .+|++++.|++|++||+++++....+.++. ....|.+++|+|+++.
T Consensus       291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~-~~~~v~~v~fsp~~~~  369 (524)
T 2j04_B          291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF-RGSNLVPVVYCPQIYS  369 (524)
T ss_dssp             EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC-SCCSCCCEEEETTTTE
T ss_pred             EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc-ccCcccceEeCCCcCe
Confidence            9999976 4456688899999999  567887 899999999999999999888766665421 1235789999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          251 ALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       251 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      |++++.|++|++||++++.++.++.+|.+.|++|+|||+|
T Consensus       370 l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g  409 (524)
T 2j04_B          370 YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH  409 (524)
T ss_dssp             EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC
T ss_pred             EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC
Confidence            9999999999999999999989999999999999999986

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-36  Score=275.52  Aligned_cols=226  Identities=13%  Similarity=0.110  Sum_probs=197.0

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (290)
                      ....+|.+.|++++|+| ++.+||+|+.||+|+||+....+....+. |..+|.+++|+| +++|++++.|++|++||+.
T Consensus        11 ~~~~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EEEEECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred             ccccCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence            34458999999999999 78899999999999999998877666554 788999999999 8899999999999999999


Q ss_pred             CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE-----------EeeecCCCCeEEEEEcCC-CCE
Q 022910          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-----------NMFSGHGSSVTCGDFTPD-GKT  205 (290)
Q Consensus       138 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~~~~-~~~  205 (290)
                      +++.+..+. +...|++++|+|++++|++|+.||.|++||+++++..           ..+.+|..+|.+++|+|+ +..
T Consensus        88 ~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~  166 (902)
T 2oaj_A           88 SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT  166 (902)
T ss_dssp             TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred             CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence            999988886 6678999999999999999999999999999988753           234568899999999995 578


Q ss_pred             EEEEeCCCeEEEEcCCCCeeeEEEeCC---------------CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 022910          206 ICTGSDDATLRVWNPKSGENIHVIRGH---------------PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  270 (290)
                      |++|+.||.| +||+++++.+..+..+               ..|...|++++|+|+|++|++|+.||.|++||++++++
T Consensus       167 l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          167 VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence            9999999999 9999999988887653               22357799999999999999999999999999999998


Q ss_pred             EEE--Ec---c-------------CCCcEEEEEEec
Q 022910          271 VSS--LV---S-------------HTDSIECIGFSR  288 (290)
Q Consensus       271 ~~~--~~---~-------------~~~~v~~i~~s~  288 (290)
                      +..  +.   .             |..+|++++|++
T Consensus       246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~  281 (902)
T 2oaj_A          246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC  281 (902)
T ss_dssp             EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred             EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence            764  21   1             345899999964

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-36  Score=253.68  Aligned_cols=230  Identities=20%  Similarity=0.334  Sum_probs=199.6

Q ss_pred             eeeccCCcCEEEEEECCC---CCcEEEEecCCCcEEEEEccCCeeeeeecc-----ccCCEEEEEECCC----CCEEEEE
Q 022910           58 HIFSGHSDEVYSVACSPT---DATLVATGGGDDKGFFWRINQGDWASEIQG-----HKDSVSSLAFSMD----GQLLASG  125 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~i~~~~~~~~----~~~l~~~  125 (290)
                      ....+|.++|++++|+|.   +..++++++.++.|++|++.+++.+..+..     |...|.+++|+|+    +++|+++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            345589999999999983   345566666677999999998877766654     4577999999998    6699999


Q ss_pred             eCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEee---ecCCCCeEEEEEcC
Q 022910          126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTP  201 (290)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~  201 (290)
                      +.||.|++|++.+++.+..+..|...|.+++|+| ++++|++++.||.|++||+++++.+..+   ..|...|.+++|+|
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  171 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL  171 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred             cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence            9999999999999999999999999999999999 8999999999999999999999988887   67999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCeeeEEEe-------------------------CCCCcccCeEEEEEcCCCCEEEEEeC
Q 022910          202 DGKTICTGSDDATLRVWNPKSGENIHVIR-------------------------GHPYHTEGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~  256 (290)
                      ++++|++++.||.|++||+++++....+.                         ....|...|.+++|+  +.+|++++.
T Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~  249 (366)
T 3k26_A          172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC  249 (366)
T ss_dssp             TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred             CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence            99999999999999999998765432221                         111277889999998  779999999


Q ss_pred             CCcEEEEEcCCCc--------------EEEEEccCCCcEEEEEEecC
Q 022910          257 DGSVHMVNITTGK--------------VVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       257 dg~i~~wd~~~~~--------------~~~~~~~~~~~v~~i~~s~d  289 (290)
                      ||.|++||+.+++              .+..+..|...|++++|+|+
T Consensus       250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  296 (366)
T 3k26_A          250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMD  296 (366)
T ss_dssp             SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEEC
T ss_pred             CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCC
Confidence            9999999998874              48888999999999999998

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-35  Score=239.40  Aligned_cols=225  Identities=20%  Similarity=0.283  Sum_probs=203.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC---eeeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (290)
                      ......+..|...|.+++|+| ++.+|++|+.||.|++|++...   +....+..|...|.++.|  ++++|++++.+|.
T Consensus        49 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~  125 (313)
T 3odt_A           49 QWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKT  125 (313)
T ss_dssp             SEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred             CEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCC
Confidence            456778889999999999999 7889999999999999998764   556778889999999999  6789999999999


Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEeeec-CCCCeEEEEEcCCCCEEEE
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTPDGKTICT  208 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~  208 (290)
                      |++||  .++....+..|...+.+++|+| +++++++++.+|.|++||  ..+....+.. +...+.+++|+|++. +++
T Consensus       126 i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~  200 (313)
T 3odt_A          126 AKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FIS  200 (313)
T ss_dssp             EEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEE
T ss_pred             EEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEE
Confidence            99999  6778888889999999999998 899999999999999999  4455666666 889999999999988 999


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      ++.+|.|++||+++++.+..+..   |...|++++|+|++ .|++++.||.|++||+.+++++..+..|...|++++|+|
T Consensus       201 ~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~  276 (313)
T 3odt_A          201 CSNDGLIKLVDMHTGDVLRTYEG---HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS  276 (313)
T ss_dssp             EETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT
T ss_pred             ccCCCeEEEEECCchhhhhhhhc---CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc
Confidence            99999999999999999888876   78899999999998 688999999999999999999999999999999999999


Q ss_pred             CC
Q 022910          289 SE  290 (290)
Q Consensus       289 d~  290 (290)
                      ++
T Consensus       277 ~~  278 (313)
T 3odt_A          277 NG  278 (313)
T ss_dssp             TS
T ss_pred             CC
Confidence            85

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=259.98  Aligned_cols=225  Identities=14%  Similarity=0.208  Sum_probs=190.2

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-----------eeeeecccc------------CCEEEEEECCCC
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----------WASEIQGHK------------DSVSSLAFSMDG  119 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~------------~~i~~~~~~~~~  119 (290)
                      |.+.|++++|+| ++.+||+|+.||.|+||++.+++           ....+.+|.            ..|.+++|+|++
T Consensus        27 ~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           27 EADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             ccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            678999999999 88899999999999999998876           477788898            889999999998


Q ss_pred             --CEEEEEeCCCcEEEEcCCCCceE---------------------------------------EE-EecCCCCEEEEEE
Q 022910          120 --QLLASGGLDGLVQIWDPSSGNLK---------------------------------------CT-LEGPGGGVEWVSW  157 (290)
Q Consensus       120 --~~l~~~~~dg~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~i~~i~~  157 (290)
                        .+|++++.|+.|++|++.++...                                       .. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998764331                                       12 3568899999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEECCc-ccEEE-------eeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEcCCCCee---
Q 022910          158 HPRGHIVLAGSEDSTVWMWNADR-AAYLN-------MFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGEN---  225 (290)
Q Consensus       158 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---  225 (290)
                      +|++++|++| .|+.|++||+++ .+.+.       .+..|...|.+++|+|++ ++|++++.||.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999999 799999999994 44444       356789999999999998 9999999999999999999886   


Q ss_pred             -eEEEeCCCC---------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcEEEEEccCCCc--------------
Q 022910          226 -IHVIRGHPY---------HTEGLTCLTISADSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDS--------------  280 (290)
Q Consensus       226 -~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~--------------  280 (290)
                       ...+..+..         |...|.+++|+|++++|++++. +.|++||+++ ++++..+.+|...              
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  343 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF  343 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence             677765310         1138999999999999999999 9999999997 8889999888542              


Q ss_pred             -EEEEEEecCC
Q 022910          281 -IECIGFSRSE  290 (290)
Q Consensus       281 -v~~i~~s~d~  290 (290)
                       +..++|+|+|
T Consensus       344 ~~~~~~~s~~~  354 (447)
T 3dw8_B          344 DKFECCWNGSD  354 (447)
T ss_dssp             CCCCEEECTTS
T ss_pred             cceEEEECCCC
Confidence             3348999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.3e-34  Score=246.45  Aligned_cols=224  Identities=22%  Similarity=0.368  Sum_probs=199.9

Q ss_pred             eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      +.+|...|++|+|+| ++.+|++|+.||.|+||++.+++.+..+.+|...+.++.+  ++.+|++|+.|+.+++|+....
T Consensus       143 ~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          143 MEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             CCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred             ecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeeccc
Confidence            346888999999999 7889999999999999999999999999999999999888  5679999999999999998865


Q ss_pred             -ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc----EEEeeecCCCCeEEEEEcCCC-CEEEEE--eC
Q 022910          140 -NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA----YLNMFSGHGSSVTCGDFTPDG-KTICTG--SD  211 (290)
Q Consensus       140 -~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~--~~  211 (290)
                       ..+..+.+|...+..+.|+|++.++++++.|+.+++|++.+++    .+.....|...|.+++|+|.+ .+++++  +.
T Consensus       220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~  299 (420)
T 4gga_A          220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS  299 (420)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred             ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence             4567788999999999999999999999999999999998764    345667789999999999954 555553  57


Q ss_pred             CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS--KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      |+.|++||+.+++....+.    ....+.++.|+|+++.|++++  .|+.|++||+.+++++.++.+|.+.|++++|+||
T Consensus       300 D~~I~iwd~~t~~~~~~~~----~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spd  375 (420)
T 4gga_A          300 DRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD  375 (420)
T ss_dssp             TCEEEEEETTTTEEEEEEE----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             CCEEEEEeCCccccceeec----cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            9999999999999988887    456799999999999888765  6899999999999999999999999999999998


Q ss_pred             C
Q 022910          290 E  290 (290)
Q Consensus       290 ~  290 (290)
                      |
T Consensus       376 g  376 (420)
T 4gga_A          376 G  376 (420)
T ss_dssp             S
T ss_pred             C
Confidence            6

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.8e-37  Score=255.98  Aligned_cols=206  Identities=16%  Similarity=0.263  Sum_probs=173.8

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---eeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      ..+..+.+|...|.+++|+| ++.+|++++.|+.|++|++.+++   ....+..|...|.+++|+|++++|++++.|+.|
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  124 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVI  124 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCE
T ss_pred             EEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeE
Confidence            56778899999999999999 67889999999999999999877   666777899999999999999999999999999


Q ss_pred             EEEcCCCCc---eEEEEec-CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC------------------cccEEEeeec
Q 022910          132 QIWDPSSGN---LKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD------------------RAAYLNMFSG  189 (290)
Q Consensus       132 ~i~d~~~~~---~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~  189 (290)
                      ++|++.+++   ....+.. |...|.+++|+|++++|++++.||.|++||++                  .++++..+ .
T Consensus       125 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  203 (377)
T 3dwl_C          125 SVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P  203 (377)
T ss_dssp             EECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C
T ss_pred             EEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c
Confidence            999999887   4677777 89999999999999999999999999999985                  35566667 8


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee----eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       190 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      |...|.+++|+|++++|++++.||.|++||+++++.    +..+..   |...|.+++|+|++++|++|+.++.+ +|+.
T Consensus       204 ~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          204 SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL---SQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC---SSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC---CCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence            999999999999999999999999999999999887    555555   78899999999999999998766655 6665


Q ss_pred             C
Q 022910          266 T  266 (290)
Q Consensus       266 ~  266 (290)
                      .
T Consensus       280 ~  280 (377)
T 3dwl_C          280 N  280 (377)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.3e-36  Score=248.23  Aligned_cols=225  Identities=12%  Similarity=0.078  Sum_probs=197.0

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---eeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEE
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQI  133 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i  133 (290)
                      ....+|.+.|++++|+| ++.+|++++.||.|++|++.++.   ....+..|...|.+++|+|+++ +|++++.+|.|++
T Consensus         5 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             ECSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             ecccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            44568999999999999 77889999999999999998876   3444557999999999999999 9999999999999


Q ss_pred             EcC-CCCceEEEEec--CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc---------ccEEEeeecCCCCeEEEEEcC
Q 022910          134 WDP-SSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---------AAYLNMFSGHGSSVTCGDFTP  201 (290)
Q Consensus       134 ~d~-~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~~~  201 (290)
                      |++ .+++. ..+..  |...|.+++|+| +++|++++.|+.|++||+++         ++++..+. +...|.+++|+|
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence            999 77765 67778  999999999999 99999999999999999998         77777776 889999999998


Q ss_pred             CCCEEEEEeCCCeEEEEcCCC-Ceee-EEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC------cEEE
Q 022910          202 DGKTICTGSDDATLRVWNPKS-GENI-HVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG------KVVS  272 (290)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~-~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~------~~~~  272 (290)
                      ++  +++++.++.|++||+++ +... .....  .+...+.+++|+| ++++|++++.||.|++|++...      +.+.
T Consensus       161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  236 (342)
T 1yfq_A          161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEES--GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             SE--EEEEESTTEEEEEESSCCTTCCCEEEEC--SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             Cc--EEEEeCCCeEEEEECCccccccceeeec--CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence            76  99999999999999998 5432 22222  2678899999999 9999999999999999999887      7888


Q ss_pred             EEccCCC---------cEEEEEEecCC
Q 022910          273 SLVSHTD---------SIECIGFSRSE  290 (290)
Q Consensus       273 ~~~~~~~---------~v~~i~~s~d~  290 (290)
                      .+..|..         .|++++|+|++
T Consensus       237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~  263 (342)
T 1yfq_A          237 AFRCHRLNLKDTNLAYPVNSIEFSPRH  263 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred             eeecccccccccccceeEEEEEEcCCC
Confidence            8888865         99999999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.6e-36  Score=255.56  Aligned_cols=217  Identities=15%  Similarity=0.254  Sum_probs=181.0

Q ss_pred             CCceeeeccCC------------cCEEEEEECCCCC-cEEEEecCCCcEEEEEccCCeee--------------------
Q 022910           54 DDSTHIFSGHS------------DEVYSVACSPTDA-TLVATGGGDDKGFFWRINQGDWA--------------------  100 (290)
Q Consensus        54 ~~~~~~~~~h~------------~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~--------------------  100 (290)
                      ......+.+|.            +.|++++|+|++. .+|++++.|+.|++|++.++...                    
T Consensus        71 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~  150 (447)
T 3dw8_B           71 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVT  150 (447)
T ss_dssp             EEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCC
T ss_pred             eeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCccccc
Confidence            34578899998            8899999999432 68889999999999999764432                    


Q ss_pred             -------------------ee-eccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC-CceEE-------EEecCCCCE
Q 022910          101 -------------------SE-IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKC-------TLEGPGGGV  152 (290)
Q Consensus       101 -------------------~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~i  152 (290)
                                         .. ..+|...|.+++|+|++++|+++ .|+.|++||+.+ ++.+.       .+..|...|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  229 (447)
T 3dw8_B          151 TLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVI  229 (447)
T ss_dssp             SCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCE
T ss_pred             ceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcce
Confidence                               12 35799999999999999999998 799999999984 34443       245788899


Q ss_pred             EEEEEcCCC-CEEEEeeCCCeEEEEECCcccE----EEeeecCCC------------CeEEEEEcCCCCEEEEEeCCCeE
Q 022910          153 EWVSWHPRG-HIVLAGSEDSTVWMWNADRAAY----LNMFSGHGS------------SVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       153 ~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                      .+++|+|++ ++|++|+.||.|++||+++++.    +..+..|..            .|.+++|+|++++|++++. +.|
T Consensus       230 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v  308 (447)
T 3dw8_B          230 TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSV  308 (447)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEE
T ss_pred             EEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeE
Confidence            999999998 9999999999999999999886    677777775            8999999999999999999 999


Q ss_pred             EEEcCCC-CeeeEEEeCCCCccc------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 022910          216 RVWNPKS-GENIHVIRGHPYHTE------------GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS  272 (290)
Q Consensus       216 ~i~d~~~-~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  272 (290)
                      ++||+++ ++++..+..+.....            .+..++|+|++++|++|+.||.|++||+.+++.+.
T Consensus       309 ~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          309 KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             EEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             EEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence            9999997 777777776421111            13358999999999999999999999999988763

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.5e-34  Score=236.47  Aligned_cols=231  Identities=20%  Similarity=0.339  Sum_probs=206.3

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ..+.+.+.+|...|.+++|+| ++.+|++|+.|+.|++|+............+...+..+.+++++++|++++.|+.+++
T Consensus        76 ~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~  154 (340)
T 4aow_A           76 GIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL  154 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             ceeeEEEeCCCCCEEEEEECC-CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEE
Confidence            456788999999999999999 7889999999999999999999988888888999999999999999999999999999


Q ss_pred             EcCCCCceE-EEEecCCCCEEEEEEcCCC--CEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910          134 WDPSSGNLK-CTLEGPGGGVEWVSWHPRG--HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       134 ~d~~~~~~~-~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      |++...... .....|...+.+++|++++  .++++++.|+.|++||+++++.+..+.+|..+|++++|+|++++|++|+
T Consensus       155 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  234 (340)
T 4aow_A          155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG  234 (340)
T ss_dssp             ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence            998766543 3445688899999998864  5789999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc---------cCCCcE
Q 022910          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV---------SHTDSI  281 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---------~~~~~v  281 (290)
                      .||.|++||+++.+.+..+.    +...+.+++|+|++.++ +++.|+.|++||++++..+..+.         +|...|
T Consensus       235 ~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v  309 (340)
T 4aow_A          235 KDGQAMLWDLNEGKHLYTLD----GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC  309 (340)
T ss_dssp             TTCEEEEEETTTTEEEEEEE----CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCE
T ss_pred             CCCeEEEEEeccCceeeeec----CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCE
Confidence            99999999999999988887    45689999999987655 56679999999999888776654         578899


Q ss_pred             EEEEEecCC
Q 022910          282 ECIGFSRSE  290 (290)
Q Consensus       282 ~~i~~s~d~  290 (290)
                      ++++|+|+|
T Consensus       310 ~~l~~s~dg  318 (340)
T 4aow_A          310 TSLAWSADG  318 (340)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEECCCC
Confidence            999999986

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.4e-36  Score=249.10  Aligned_cols=221  Identities=20%  Similarity=0.313  Sum_probs=183.3

Q ss_pred             ceeeeccCCcCEEEEEECCC-CCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCC--CCEEEEEeCCCc
Q 022910           56 STHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMD--GQLLASGGLDGL  130 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~  130 (290)
                      .+..+.+|.++|.+++|+|. ++.+|++|+.|++|++||+.+++  ....+.+|...|.+++|+|+  +.+|++++.|+.
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~  128 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA  128 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence            46789999999999999863 47899999999999999998863  55677889999999999998  789999999999


Q ss_pred             EEEEcCCCCce---EEEEecCCCCEEEEEEcCC-----------------CCEEEEeeCCCeEEEEECCcc---cEEEee
Q 022910          131 VQIWDPSSGNL---KCTLEGPGGGVEWVSWHPR-----------------GHIVLAGSEDSTVWMWNADRA---AYLNMF  187 (290)
Q Consensus       131 i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~  187 (290)
                      |++|++..+..   ...+..|...+.+++|+|+                 +++|++|+.|+.|++||++..   +.+..+
T Consensus       129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l  208 (316)
T 3bg1_A          129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL  208 (316)
T ss_dssp             EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred             EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence            99999987642   2345678888999999997                 468999999999999999754   467788


Q ss_pred             ecCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEcCCCCe----eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCc
Q 022910          188 SGHGSSVTCGDFTPDG----KTICTGSDDATLRVWNPKSGE----NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS  259 (290)
Q Consensus       188 ~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  259 (290)
                      .+|...|.+++|+|++    .+|++++.||+|++|++.+..    ....+..   |...|.+++|+|++++|++++.||.
T Consensus       209 ~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~---~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          209 EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK---FNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE---CSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc---CCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            8999999999999986    899999999999999987631    1223333   6788999999999999999999999


Q ss_pred             EEEEEcCC-C--cEEEEEccCCC
Q 022910          260 VHMVNITT-G--KVVSSLVSHTD  279 (290)
Q Consensus       260 i~~wd~~~-~--~~~~~~~~~~~  279 (290)
                      |++|+... +  .++..+....+
T Consensus       286 v~lw~~~~~g~~~~~~~~~~~~~  308 (316)
T 3bg1_A          286 VTLWKESVDGQWVCISDVNKGQG  308 (316)
T ss_dssp             EEEEEECTTSCEEEEEECC----
T ss_pred             EEEEEECCCCcEEEeeeccCCCC
Confidence            99999863 3  45555654443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-34  Score=249.41  Aligned_cols=228  Identities=24%  Similarity=0.397  Sum_probs=205.2

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEEC--CCCCEEEEEeCCCc
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS--MDGQLLASGGLDGL  130 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~  130 (290)
                      ..+.+..+.+|.+.|.+++|+| ++ +|++|+.||+|++|++.+++.+..+.+|...|.+++|+  +++++|++++.||.
T Consensus       151 ~~~~~~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~  228 (464)
T 3v7d_B          151 NKKFLLQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  228 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred             CCcEEEEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence            3567888999999999999998 54 88999999999999999999999999999999999998  57789999999999


Q ss_pred             EEEEcCCCCce-----------------------EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee
Q 022910          131 VQIWDPSSGNL-----------------------KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF  187 (290)
Q Consensus       131 i~i~d~~~~~~-----------------------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  187 (290)
                      |++|++.++..                       +..+.+|...+.++  +++++++++++.||.|++||+++++.+..+
T Consensus       229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  306 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL  306 (464)
T ss_dssp             EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            99999987653                       44567788888877  567899999999999999999999999999


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       188 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      .+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..   |...|.+++|+  +.+|++|+.||.|++||+.+
T Consensus       307 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG---HTALVGLLRLS--DKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence            99999999999999999999999999999999999999888877   78899999997  57999999999999999999


Q ss_pred             CcEEEEEccCCCcEEEEEEecCC
Q 022910          268 GKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       268 ~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ++....+. |...+..++|+|++
T Consensus       382 ~~~~~~~~-~~~~~~~~~~~~~~  403 (464)
T 3v7d_B          382 YSRKFSYH-HTNLSAITTFYVSD  403 (464)
T ss_dssp             CCEEEEEE-CTTCCCEEEEEECS
T ss_pred             Cceeeeec-CCCCccEEEEEeCC
Confidence            88776664 56778888898875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.3e-35  Score=245.67  Aligned_cols=200  Identities=17%  Similarity=0.140  Sum_probs=169.9

Q ss_pred             CCcCEEEEEECCCCCcEEE--EecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc
Q 022910           63 HSDEVYSVACSPTDATLVA--TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~--~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (290)
                      +...+.+++|+| ++++++  +++.|++|+|||+.+++.+..+. |...|.+++|+|++++|++++.+ .+++|+..+++
T Consensus       132 ~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          132 ADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             TTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred             cccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence            445689999999 555544  55678999999999999988886 77889999999999999999855 56677777776


Q ss_pred             eEEE--EecCCCCEEEEEEcCCCCEEEEeeCCC----eEEEEECCcccE----EEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910          141 LKCT--LEGPGGGVEWVSWHPRGHIVLAGSEDS----TVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       141 ~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      .+..  ...|...|.+++|+|+++++++++.++    .+++|++.....    ...+.+|..+|++++|+|+|++|++|+
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence            5543  345777899999999999999998877    688899876543    356678999999999999999999999


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      .|+.|+|||+++++++..+..  .|...|++++|+|+|++|++|+.|++|+||++..
T Consensus       289 ~D~~V~iwd~~~~~~~~~~~~--gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          289 NDNSIALVKLKDLSMSKIFKQ--AHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TTSCEEEEETTTTEEEEEETT--SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCEEEEEECCCCcEEEEecC--cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999999999999998877632  2889999999999999999999999999999964

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.5e-35  Score=245.48  Aligned_cols=177  Identities=18%  Similarity=0.230  Sum_probs=150.5

Q ss_pred             CEEEEEECCCCCEEEEEe--CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE-
Q 022910          109 SVSSLAFSMDGQLLASGG--LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-  185 (290)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-  185 (290)
                      .+.+++|+|+|+++++++  .|++|+|||+.+++.+..+. |.+.|.+++|+|++++|++++.+ .+++|+..+++.+. 
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~  212 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIAR  212 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEE
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceee
Confidence            477899999999877554  68999999999999988886 66789999999999999999865 56666666665543 


Q ss_pred             -eeecCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEcCCCCeee----EEEeCCCCcccCeEEEEEcCCCCEEEEEeC
Q 022910          186 -MFSGHGSSVTCGDFTPDGKTICTGSDDA----TLRVWNPKSGENI----HVIRGHPYHTEGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       186 -~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  256 (290)
                       ....|...|.+++|+|+++++++++.++    .+++|++......    ..+..   |...|++++|+|+|++||+|+.
T Consensus       213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          213 KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN---RFKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES---SCSCEEEEEECTTSCEEEEEET
T ss_pred             eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC---CCCCeEeEEECCCCCceEEEcC
Confidence             3456888999999999999999998887    6888998776542    23333   7789999999999999999999


Q ss_pred             CCcEEEEEcCCCcEEEEE-ccCCCcEEEEEEecCC
Q 022910          257 DGSVHMVNITTGKVVSSL-VSHTDSIECIGFSRSE  290 (290)
Q Consensus       257 dg~i~~wd~~~~~~~~~~-~~~~~~v~~i~~s~d~  290 (290)
                      |++|+|||+.+++++..+ .+|..+|++++|||||
T Consensus       290 D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg  324 (365)
T 4h5i_A          290 DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS  324 (365)
T ss_dssp             TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred             CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence            999999999999999986 6899999999999996

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.9e-35  Score=250.28  Aligned_cols=222  Identities=21%  Similarity=0.350  Sum_probs=193.3

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCe----eeeeeccccCCEEEEEECC-CCCEEEEEeCCCcEEEEcCCCC-
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSG-  139 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-  139 (290)
                      ....++++|....++++++.+|.|+||++....    ....+.+|...|++++|+| ++++|++++.||.|++|++.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            345688998555566678999999999996642    3445778999999999999 8999999999999999999988 


Q ss_pred             ------ceEEEEecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCcccEEEee--ecCCCCeEEEEEcCCCCEEEEEe
Q 022910          140 ------NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMF--SGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       140 ------~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                            +.+..+.+|...|.+++|+|++ ++|++++.||.|++||+++++.+..+  ..|...|.+++|+|++++|++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                  6678889999999999999998 69999999999999999999999998  78999999999999999999999


Q ss_pred             CCCeEEEEcCCCCeeeEEE-eCCCCccc-CeEEEEEcCCCCEEEEE---eCCCcEEEEEcCCCcE-EEEEc-cCCCcEEE
Q 022910          211 DDATLRVWNPKSGENIHVI-RGHPYHTE-GLTCLTISADSTLALSG---SKDGSVHMVNITTGKV-VSSLV-SHTDSIEC  283 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~l~~~---~~dg~i~~wd~~~~~~-~~~~~-~~~~~v~~  283 (290)
                      .||.|++||+++++.+..+ ..   |.. .+.++.|+|++.+|++|   +.|+.|++||+++++. +.... .|...|.+
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~  272 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRP---HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL  272 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECS---SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE
T ss_pred             cCCcEEEEeCCCCceeeeeccC---CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeE
Confidence            9999999999999988887 44   444 48999999999999999   7899999999998664 33333 46788999


Q ss_pred             EEEecCC
Q 022910          284 IGFSRSE  290 (290)
Q Consensus       284 i~~s~d~  290 (290)
                      ++|+|++
T Consensus       273 ~~~s~~~  279 (402)
T 2aq5_A          273 PFFDPDT  279 (402)
T ss_dssp             EEEETTT
T ss_pred             EEEcCCC
Confidence            9999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-34  Score=245.77  Aligned_cols=229  Identities=21%  Similarity=0.360  Sum_probs=198.8

Q ss_pred             CCCceeee--ccCCcC--EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc-ccCCEEEEEECCCCCEEEEEeC
Q 022910           53 PDDSTHIF--SGHSDE--VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGL  127 (290)
Q Consensus        53 ~~~~~~~~--~~h~~~--v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  127 (290)
                      +..+.+.+  .+|...  +.+++|++   ..+++++.++.|++|++.+++....+.. |...|.+++|+|++++|++++.
T Consensus        78 ~~~p~~~~~~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  154 (401)
T 4aez_A           78 NTTPERVLDAPGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG  154 (401)
T ss_dssp             CCSCSEEEECTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CCCcceeeeCCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC
Confidence            44444444  477765  45577765   2356777899999999999988777665 7899999999999999999999


Q ss_pred             CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC-cccEEEeeecCCCCeEEEEEcCCCCEE
Q 022910          128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (290)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l  206 (290)
                      +|.|++|++.+++.+..+..|...|.+++|  ++++|++++.+|.|++||++ ....+..+..|...|.+++|+|++++|
T Consensus       155 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  232 (401)
T 4aez_A          155 NGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQL  232 (401)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEE
Confidence            999999999999999999999999999999  46799999999999999999 567788888999999999999999999


Q ss_pred             EEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCC-CEEEEEe--CCCcEEEEEcCCCcEEEEEccCCCcEEE
Q 022910          207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGS--KDGSVHMVNITTGKVVSSLVSHTDSIEC  283 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~  283 (290)
                      ++++.||.|++||+++++....+..   |...|.+++|+|++ .++++|+  .|+.|++||+.+++++..+. +...|++
T Consensus       233 ~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~  308 (401)
T 4aez_A          233 ASGGNDNVVQIWDARSSIPKFTKTN---HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTS  308 (401)
T ss_dssp             EEEETTSCEEEEETTCSSEEEEECC---CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEE
T ss_pred             EEEeCCCeEEEccCCCCCccEEecC---CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEE
Confidence            9999999999999999988888776   78899999999966 5666654  69999999999999999886 5678999


Q ss_pred             EEEecCC
Q 022910          284 IGFSRSE  290 (290)
Q Consensus       284 i~~s~d~  290 (290)
                      ++|+|+|
T Consensus       309 ~~~s~~~  315 (401)
T 4aez_A          309 LIWSPHS  315 (401)
T ss_dssp             EEECSSS
T ss_pred             EEECCCC
Confidence            9999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.1e-35  Score=243.08  Aligned_cols=227  Identities=12%  Similarity=0.100  Sum_probs=199.2

Q ss_pred             ceeeeccCCcCEEEEEECCCCCc-EEEEecCCCcEEEEEc-cCCeeeeeecc--ccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           56 STHIFSGHSDEVYSVACSPTDAT-LVATGGGDDKGFFWRI-NQGDWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~-~l~~~~~dg~i~iw~~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      ....+.+|...|.+++|+| ++. +|++|+.+|.|++|++ .+++. ..+..  |...|.+++|+| +++|++++.|+.|
T Consensus        48 ~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i  124 (342)
T 1yfq_A           48 DLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLI  124 (342)
T ss_dssp             EEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEE
T ss_pred             cceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeE
Confidence            3566779999999999999 677 8999999999999999 77654 66777  999999999999 9999999999999


Q ss_pred             EEEcCCC---------CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc-cc--EEEeeecCCCCeEEEEE
Q 022910          132 QIWDPSS---------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AA--YLNMFSGHGSSVTCGDF  199 (290)
Q Consensus       132 ~i~d~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~i~~~~~  199 (290)
                      ++||+.+         ++++..+. +...+.+++|+|++  +++++.++.|++||+++ +.  .......+...+.+++|
T Consensus       125 ~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~  201 (342)
T 1yfq_A          125 EVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL  201 (342)
T ss_dssp             EEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred             EEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence            9999987         77666666 78889999999887  99999999999999998 54  33444567889999999


Q ss_pred             cC-CCCEEEEEeCCCeEEEEcCCCC------eeeEEEeCCCC------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          200 TP-DGKTICTGSDDATLRVWNPKSG------ENIHVIRGHPY------HTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       200 ~~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      +| ++++|++++.+|.|++|++...      +....+..+..      |...|.+++|+|++++|++|+.||.|++||+.
T Consensus       202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence            99 9999999999999999999877      67777776421      24489999999999999999999999999999


Q ss_pred             CCcEEEEEccC-CCcEEEEEEecCC
Q 022910          267 TGKVVSSLVSH-TDSIECIGFSRSE  290 (290)
Q Consensus       267 ~~~~~~~~~~~-~~~v~~i~~s~d~  290 (290)
                      +++++..+.+| ..+|++++  |+|
T Consensus       282 ~~~~~~~~~~~h~~~v~~~~--~~~  304 (342)
T 1yfq_A          282 TRKKIKNFAKFNEDSVVKIA--CSD  304 (342)
T ss_dssp             TTEEEEECCCCSSSEEEEEE--ECS
T ss_pred             cHhHhhhhhcccCCCceEec--CCC
Confidence            99999999998 99999998  764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-35  Score=251.73  Aligned_cols=226  Identities=16%  Similarity=0.233  Sum_probs=195.3

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc---CCeeeeeecc------------ccCCEEEEE--ECCCCCEEEE
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN---QGDWASEIQG------------HKDSVSSLA--FSMDGQLLAS  124 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~---~~~~~~~~~~------------~~~~i~~~~--~~~~~~~l~~  124 (290)
                      +|...|++++|+| ++.+|++|+.||.|++|++.   .++....+..            +...+.++.  +++++.+|++
T Consensus       109 ~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (437)
T 3gre_A          109 DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA  187 (437)
T ss_dssp             ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred             cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence            5999999999999 88899999999999999995   4444333321            455677776  5678999999


Q ss_pred             EeCCCcEEEEcCCCCceEEEEec--CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-cCCCCeEEEEEcC
Q 022910          125 GGLDGLVQIWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTP  201 (290)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~  201 (290)
                      ++.||.|++||+.+++.+..+..  |...|++++|+|++++|++|+.||.|++||+++++++..+. .|..+|.+++|+|
T Consensus       188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  267 (437)
T 3gre_A          188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ  267 (437)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred             EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence            99999999999999999999988  78899999999999999999999999999999999988876 6788999997665


Q ss_pred             ----CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC-----------------------CcccCeEEEEEcCCCCEEEEE
Q 022910          202 ----DGKTICTGSDDATLRVWNPKSGENIHVIRGHP-----------------------YHTEGLTCLTISADSTLALSG  254 (290)
Q Consensus       202 ----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~l~~~  254 (290)
                          ++.+|++++.||.|++||+++++.+..+..+.                       .|...|++++|+ ++++|++|
T Consensus       268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~  346 (437)
T 3gre_A          268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTD  346 (437)
T ss_dssp             TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEE
T ss_pred             ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEec
Confidence                57799999999999999999999888887542                       156679999999 77999999


Q ss_pred             eCCCcEEEEEcCCCcEEEEEcc-------------------------------------CCCcEEEEEEecC
Q 022910          255 SKDGSVHMVNITTGKVVSSLVS-------------------------------------HTDSIECIGFSRS  289 (290)
Q Consensus       255 ~~dg~i~~wd~~~~~~~~~~~~-------------------------------------~~~~v~~i~~s~d  289 (290)
                      +.||.|++||+.+++.+..+.+                                     |...|++++|+++
T Consensus       347 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~  418 (437)
T 3gre_A          347 EATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV  418 (437)
T ss_dssp             GGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEES
T ss_pred             CCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc
Confidence            9999999999999987777765                                     7889999999886

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1e-34  Score=239.76  Aligned_cols=217  Identities=16%  Similarity=0.258  Sum_probs=188.6

Q ss_pred             CceeeeccCCcCEEEEEECCC-CCcEEEEecCCCcEEEEEccCC---------eeeeeeccccCCEEEEEECCC--CCEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQG---------DWASEIQGHKDSVSSLAFSMD--GQLL  122 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~~~~i~~~~~~~~--~~~l  122 (290)
                      .....+.+|...|++++|+|. ++.+|++|+.||.|++|++.++         +.+..+..|...|.+++|+|+  +++|
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            567788999999999999995 4789999999999999999886         557778889999999999999  9999


Q ss_pred             EEEeCCCcEEEEcCCCCceEEEEe-------------cCCCCEEEEEEcCC---CCEEEEeeCCCeEEEEECCcccE--E
Q 022910          123 ASGGLDGLVQIWDPSSGNLKCTLE-------------GPGGGVEWVSWHPR---GHIVLAGSEDSTVWMWNADRAAY--L  184 (290)
Q Consensus       123 ~~~~~dg~i~i~d~~~~~~~~~~~-------------~~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~--~  184 (290)
                      ++++.||.|++||+.+++.+..+.             .+...+.+++|+|+   +.+|++++.++.+.+|+...++.  +
T Consensus       128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  207 (351)
T 3f3f_A          128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA  207 (351)
T ss_dssp             EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence            999999999999998876543332             46778999999997   89999999999998888887764  6


Q ss_pred             EeeecCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEcCCCC-------------------------------------
Q 022910          185 NMFSGHGSSVTCGDFTPDG----KTICTGSDDATLRVWNPKSG-------------------------------------  223 (290)
Q Consensus       185 ~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~-------------------------------------  223 (290)
                      ..+.+|...|.+++|+|++    ++|++++.||.|++||++.+                                     
T Consensus       208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
T 3f3f_A          208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK  287 (351)
T ss_dssp             EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred             eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence            7778899999999999998    89999999999999999864                                     


Q ss_pred             ---------eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910          224 ---------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       224 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  274 (290)
                               +.+..+..   |...|++++|+|++++|++|+.||.|++|++.+++.+..+
T Consensus       288 ~~~~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          288 AELQSNLQVELLSEHDD---HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ---CCSEEEEEEEEECT---TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             eeecccccccEEEEEec---ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                     33344444   7889999999999999999999999999999987655444

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.4e-34  Score=243.93  Aligned_cols=226  Identities=24%  Similarity=0.512  Sum_probs=193.8

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      .+.+..+.+|...|.+++|++   ..+++|+.||.|++||+.+++.+..+.+|...|.+++|  +++++++++.||.|++
T Consensus       189 ~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i  263 (445)
T 2ovr_B          189 GECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV  263 (445)
T ss_dssp             TEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred             CcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence            455677778888888888854   46778888888888888888888888888888888888  6778888888888888


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  213 (290)
                      ||+.+++.+..+..|...|.++.|  ++.++++++.||.|++||+++++.+..+.+|...+.++.++  +++|++++.||
T Consensus       264 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg  339 (445)
T 2ovr_B          264 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS  339 (445)
T ss_dssp             EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred             EECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCC
Confidence            888888888888888888888888  67889999999999999999888888888888888888774  66899999999


Q ss_pred             eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE-----ccCCCcEEEEEEec
Q 022910          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL-----VSHTDSIECIGFSR  288 (290)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~i~~s~  288 (290)
                      .|++||+++++.+..+.....|...|++++|+  +++|++|+.||.|++||+.+++.+..+     ..|.+.|++++|+|
T Consensus       340 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  417 (445)
T 2ovr_B          340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN  417 (445)
T ss_dssp             CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             eEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC
Confidence            99999999999888888766688899999996  579999999999999999999999988     46788999999999


Q ss_pred             CC
Q 022910          289 SE  290 (290)
Q Consensus       289 d~  290 (290)
                      +|
T Consensus       418 ~~  419 (445)
T 2ovr_B          418 TK  419 (445)
T ss_dssp             SE
T ss_pred             CE
Confidence            85

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-34  Score=240.92  Aligned_cols=216  Identities=19%  Similarity=0.290  Sum_probs=188.2

Q ss_pred             CCceeeeccCCcCEEEEEECCC-CCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCC--CCEEEEEeCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMD--GQLLASGGLD  128 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d  128 (290)
                      ...+..+.+|...|++++|+|. ++.+|++|+.||.|++|++.+++  .+..+..|...|.+++|+|+  +.+|++++.|
T Consensus        45 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           45 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence            4567788999999999999973 27899999999999999999987  67778889999999999999  9999999999


Q ss_pred             CcEEEEcCCCCc--eEEEEecCCCCEEEEEEcC-------------CCCEEEEeeCCCeEEEEECCccc----EEEeeec
Q 022910          129 GLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHP-------------RGHIVLAGSEDSTVWMWNADRAA----YLNMFSG  189 (290)
Q Consensus       129 g~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~  189 (290)
                      |.|++||+.++.  ....+..|...|.+++|+|             ++.+|++++.||.|++||++++.    ....+.+
T Consensus       125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  204 (379)
T 3jrp_A          125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  204 (379)
T ss_dssp             SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence            999999998873  4456678899999999999             69999999999999999998754    4567778


Q ss_pred             CCCCeEEEEEcCC---CCEEEEEeCCCeEEEEcCCCCee--eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910          190 HGSSVTCGDFTPD---GKTICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       190 ~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  264 (290)
                      |...|.+++|+|+   +++|++++.||.|++||++++..  ...+.....+...|++++|+|++++|++++.||.|++|+
T Consensus       205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            9999999999999   89999999999999999988642  223333334778899999999999999999999999999


Q ss_pred             cCCCc
Q 022910          265 ITTGK  269 (290)
Q Consensus       265 ~~~~~  269 (290)
                      +....
T Consensus       285 ~~~~~  289 (379)
T 3jrp_A          285 ENLEG  289 (379)
T ss_dssp             EEETT
T ss_pred             CCCCC
Confidence            98543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.6e-35  Score=251.91  Aligned_cols=235  Identities=15%  Similarity=0.151  Sum_probs=191.9

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--cccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      .....+.+|.+.|++|+|+|.++.+|++|+.||+|++||+.++.......  .+...+.+++|+|++++|++|+.||.|+
T Consensus       155 ~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~  234 (435)
T 4e54_B          155 PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVI  234 (435)
T ss_dssp             CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEE
T ss_pred             eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEe
Confidence            34456679999999999999778899999999999999998765444333  3345678999999999999999999999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEE---eeecCCCCeEEEEEcCCCCEEEE
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN---MFSGHGSSVTCGDFTPDGKTICT  208 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~  208 (290)
                      +||+.. +.+..+..|...|.+++|+|++. +|++|+.|+.|++||+++.+...   ...+|...|++++|+|++.+|++
T Consensus       235 ~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s  313 (435)
T 4e54_B          235 LLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT  313 (435)
T ss_dssp             EEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE
T ss_pred             eeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEE
Confidence            999864 55677888999999999999876 78899999999999998875443   33568999999999999999999


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEeCCCCc---ccCeEEEEEcCCCCEEEEEeC------------CCcEEEEEcCCCcEEEE
Q 022910          209 GSDDATLRVWNPKSGENIHVIRGHPYH---TEGLTCLTISADSTLALSGSK------------DGSVHMVNITTGKVVSS  273 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~------------dg~i~~wd~~~~~~~~~  273 (290)
                      ++.||.|++||++++.....+..+...   ...+..+.|+|++.++++++.            ++.|++||..+++++..
T Consensus       314 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~  393 (435)
T 4e54_B          314 TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ  393 (435)
T ss_dssp             EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred             EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence            999999999999998887776553211   112334567777777766642            35799999999999988


Q ss_pred             Ec-cCCCcEEEE-EEecCC
Q 022910          274 LV-SHTDSIECI-GFSRSE  290 (290)
Q Consensus       274 ~~-~~~~~v~~i-~~s~d~  290 (290)
                      +. +|...|.++ +|||+|
T Consensus       394 l~~~~~~~v~s~~~fspdg  412 (435)
T 4e54_B          394 LYDPESSGISSLNEFNPMG  412 (435)
T ss_dssp             ECCSSCCCCCCEEEECTTS
T ss_pred             EeCCCCCcEEEEEEECCCC
Confidence            75 677889887 699986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.8e-34  Score=256.27  Aligned_cols=221  Identities=18%  Similarity=0.270  Sum_probs=203.1

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----eeeeeeccccCC-EEEEEECC--CCCEEEEEeCCCcEEEE
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDS-VSSLAFSM--DGQLLASGGLDGLVQIW  134 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~-i~~~~~~~--~~~~l~~~~~dg~i~i~  134 (290)
                      .|.+.|.+++|+| ++.+|++++ ++.|++|++.++    +....+.+|... |++++|+|  ++++|++++.||.|++|
T Consensus        16 ~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw   93 (615)
T 1pgu_A           16 TQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   93 (615)
T ss_dssp             CCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence            6889999999999 777888887 789999999998    888999999999 99999999  99999999999999999


Q ss_pred             cCCCC--------ceEEEEecCCCCEEEEEEcCCCCEEEEeeCC----CeEEEEECCcccEEEeeecCCCCeEEEEEcCC
Q 022910          135 DPSSG--------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYLNMFSGHGSSVTCGDFTPD  202 (290)
Q Consensus       135 d~~~~--------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  202 (290)
                      ++.++        +....+..|..+|.+++|+|++++|++++.+    +.|++|+  .++.+..+.+|...|.+++|+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~  171 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQS  171 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSS
T ss_pred             eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCC
Confidence            99754        6677888899999999999999999999987    6888888  56778888999999999999999


Q ss_pred             CC-EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCccc---CeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcEEEEE-c-
Q 022910          203 GK-TICTGSDDATLRVWNPKSGENIHVIRGHPYHTE---GLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVSSL-V-  275 (290)
Q Consensus       203 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~-~-  275 (290)
                      ++ +|++++.|+.|++||+.+++.+..+..   |..   .|++++|+|+ +++|++++.||.|++||+.+++.+..+ . 
T Consensus       172 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  248 (615)
T 1pgu_A          172 RPMRSMTVGDDGSVVFYQGPPFKFSASDRT---HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD  248 (615)
T ss_dssp             SSCEEEEEETTTEEEEEETTTBEEEEEECS---SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred             CCcEEEEEeCCCcEEEEeCCCcceeeeecc---cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccc
Confidence            97 899999999999999999998888887   566   8999999999 999999999999999999999999999 6 


Q ss_pred             --cCCCcEEEEEEecCC
Q 022910          276 --SHTDSIECIGFSRSE  290 (290)
Q Consensus       276 --~~~~~v~~i~~s~d~  290 (290)
                        .|...|++++|+ ++
T Consensus       249 ~~~~~~~v~~~~~~-~~  264 (615)
T 1pgu_A          249 QEPVQGGIFALSWL-DS  264 (615)
T ss_dssp             TBCCCSCEEEEEES-SS
T ss_pred             ccccCCceEEEEEc-CC
Confidence              899999999998 54

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.4e-35  Score=248.90  Aligned_cols=215  Identities=15%  Similarity=0.123  Sum_probs=167.9

Q ss_pred             CCcEEEEecCCCcEEEEEccCCeee-----eeeccccCCEEEEEECC--------CCCEEEEEeCCCcEEEEcCCCCceE
Q 022910           76 DATLVATGGGDDKGFFWRINQGDWA-----SEIQGHKDSVSSLAFSM--------DGQLLASGGLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~~~i~~~~~~~--------~~~~l~~~~~dg~i~i~d~~~~~~~  142 (290)
                      ++.+|++|+.|++|+||++..+...     ..+.+|.+.|.+++|+|        ++++||+++.|++|+|||+.++..+
T Consensus       100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~  179 (393)
T 4gq1_A          100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI  179 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence            6678999999999999999887543     34678999999999997        7889999999999999999998888


Q ss_pred             EEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEe-------------------------eecCCCCeEE
Q 022910          143 CTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNM-------------------------FSGHGSSVTC  196 (290)
Q Consensus       143 ~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-------------------------~~~~~~~i~~  196 (290)
                      ..+..|..++.+++|+|++. +|++++.||.|++||+++++....                         ..+|...+.+
T Consensus       180 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~  259 (393)
T 4gq1_A          180 LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLAN  259 (393)
T ss_dssp             EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSE
T ss_pred             eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccccee
Confidence            88888999999999999874 899999999999999988754322                         1346678888


Q ss_pred             EEEc-CCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC---------------cccCeEEEEEcC--CCCEEEEEeCCC
Q 022910          197 GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY---------------HTEGLTCLTISA--DSTLALSGSKDG  258 (290)
Q Consensus       197 ~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~--~~~~l~~~~~dg  258 (290)
                      +.|+ |+++.|++++.|+.+++||+..++....+..+..               .........|+|  ++.++++|+.||
T Consensus       260 v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg  339 (393)
T 4gq1_A          260 VRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG  339 (393)
T ss_dssp             EEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT
T ss_pred             eeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC
Confidence            9887 7999999999999999999988766555443110               001111223443  455777888999


Q ss_pred             cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          259 SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       259 ~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .|++||+.+++++..+..|..+|++++|||||
T Consensus       340 ~V~lwd~~~~~~~~~~~~~~~~V~svafspdG  371 (393)
T 4gq1_A          340 LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDG  371 (393)
T ss_dssp             EEEEEETTCTTCCEEEEECSSCEEEEEECTTS
T ss_pred             EEEEEECCCCcEEEEecCCCCcEEEEEEcCCC
Confidence            99999999999999888999999999999997

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=6.4e-34  Score=243.29  Aligned_cols=222  Identities=23%  Similarity=0.522  Sum_probs=202.9

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      ..+....+.+|.+.|.+++|   ++.+|++|+.||.|++|++.+++.+..+..|...|.+++|+  +.++++++.||.|+
T Consensus       162 ~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~  236 (435)
T 1p22_A          162 TLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIA  236 (435)
T ss_dssp             SCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEE
T ss_pred             CCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEE
Confidence            35677889999999999999   44689999999999999999999999999999999999996  45999999999999


Q ss_pred             EEcCCCCceE---EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910          133 IWDPSSGNLK---CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (290)
Q Consensus       133 i~d~~~~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  209 (290)
                      +||+.++...   ..+.+|...|.+++|  ++++|++|+.||.|++||+++++.+..+.+|...|.++.|+  +++|++|
T Consensus       237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g  312 (435)
T 1p22_A          237 VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSG  312 (435)
T ss_dssp             EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEE
T ss_pred             EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEE
Confidence            9999988765   667789999999999  68899999999999999999999999999999999999994  6799999


Q ss_pred             eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---------EEEEEccCCCc
Q 022910          210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK---------VVSSLVSHTDS  280 (290)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---------~~~~~~~~~~~  280 (290)
                      +.||.|++||+++++.+..+..   |...|.+++|  ++.+|++|+.||.|++||+.+++         ++..+.+|.+.
T Consensus       313 ~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~  387 (435)
T 1p22_A          313 SSDNTIRLWDIECGACLRVLEG---HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR  387 (435)
T ss_dssp             ETTSCEEEEETTTCCEEEEECC---CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC
T ss_pred             eCCCeEEEEECCCCCEEEEEeC---CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC
Confidence            9999999999999999888887   7889999999  68899999999999999998776         89999999999


Q ss_pred             EEEEEEec
Q 022910          281 IECIGFSR  288 (290)
Q Consensus       281 v~~i~~s~  288 (290)
                      |++++|.+
T Consensus       388 v~~l~~~~  395 (435)
T 1p22_A          388 VFRLQFDE  395 (435)
T ss_dssp             CCCEEECS
T ss_pred             eEEEEeCC
Confidence            99999843

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9e-34  Score=270.59  Aligned_cols=209  Identities=23%  Similarity=0.389  Sum_probs=186.9

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC--CCCEEEEEeCCCc
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGL  130 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~  130 (290)
                      ....+..+.+|.+.|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|  ++.++++++.||.
T Consensus       646 ~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~  724 (1249)
T 3sfz_A          646 TGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF  724 (1249)
T ss_dssp             TCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred             CCCEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence            3567888999999999999999 778999999999999999999999999999999999999999  4558999999999


Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee-----------------------
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-----------------------  187 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------------------  187 (290)
                      |++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+++++....+                       
T Consensus       725 v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  804 (1249)
T 3sfz_A          725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC  804 (1249)
T ss_dssp             EEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred             EEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence            999999999999999999999999999999999999999999999999876543322                       


Q ss_pred             --------------------------------ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCc
Q 022910          188 --------------------------------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH  235 (290)
Q Consensus       188 --------------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  235 (290)
                                                      .+|...|.+++|+|+++++++++.+|.|++|++.++..+..+.+   |
T Consensus       805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---h  881 (1249)
T 3sfz_A          805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG---H  881 (1249)
T ss_dssp             CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC---C
T ss_pred             EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC---C
Confidence                                            15677899999999999999999999999999999988887776   6


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          236 TEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       236 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      ...|++++|+|++++|++++.||.|++|++
T Consensus       882 ~~~v~~v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          882 LSWVHGVMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            778888888888888888888888777774

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.6e-33  Score=238.63  Aligned_cols=219  Identities=27%  Similarity=0.530  Sum_probs=199.1

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      .+....+|...|++++|   ++.+|++|+.||.|++||+.+++....+.+|...|.+++|  ++++|++|+.||.|++||
T Consensus       125 ~~~~~~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd  199 (435)
T 1p22_A          125 RIHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD  199 (435)
T ss_dssp             CEECCCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred             EEecccCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEE
Confidence            34444567788999988   4578999999999999999999999999999999999999  788999999999999999


Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE---EeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL---NMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      +.+++.+..+..|...|.+++|+  +.++++|+.||.|++||++++...   ..+.+|...|.+++|  ++++|++|+.|
T Consensus       200 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d  275 (435)
T 1p22_A          200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD  275 (435)
T ss_dssp             SSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred             CCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence            99999999999999999999997  459999999999999999987654   667789999999999  68899999999


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      |.|++||+++++.+..+..   |...|.++.|  ++.+|++|+.||.|++||+++++++..+.+|...|++++|.+
T Consensus       276 g~i~vwd~~~~~~~~~~~~---~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  346 (435)
T 1p22_A          276 RTIKVWNTSTCEFVRTLNG---HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN  346 (435)
T ss_dssp             SEEEEEETTTCCEEEEEEC---CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCS
T ss_pred             CeEEEEECCcCcEEEEEcC---CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecC
Confidence            9999999999999888886   7788999999  467999999999999999999999999999999999999853

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4e-33  Score=247.61  Aligned_cols=230  Identities=21%  Similarity=0.301  Sum_probs=207.1

Q ss_pred             CceeeeccCCcC-EEEEEECCC-CCcEEEEecCCCcEEEEEccCC--------eeeeeeccccCCEEEEEECCCCCEEEE
Q 022910           55 DSTHIFSGHSDE-VYSVACSPT-DATLVATGGGDDKGFFWRINQG--------DWASEIQGHKDSVSSLAFSMDGQLLAS  124 (290)
Q Consensus        55 ~~~~~~~~h~~~-v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~  124 (290)
                      .....+.+|.+. |++++|+|. ++.+|++|+.||.|++|++.++        +....+..|..+|.+++|+|++++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            688999999999 999999993 4568889999999999999754        667778889999999999999999999


Q ss_pred             EeCC----CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeeecCCC---CeEE
Q 022910          125 GGLD----GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGS---SVTC  196 (290)
Q Consensus       125 ~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~~  196 (290)
                      ++.+    +.|++|+  .++.+..+..|...|.+++|+|+++ ++++++.++.|++||+.+++.+..+..|..   .|.+
T Consensus       134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~  211 (615)
T 1pgu_A          134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD  211 (615)
T ss_dssp             EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEE
Confidence            9987    6888988  6778888999999999999999998 899999999999999999999999999998   9999


Q ss_pred             EEEcCC-CCEEEEEeCCCeEEEEcCCCCeeeEEE-eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910          197 GDFTPD-GKTICTGSDDATLRVWNPKSGENIHVI-RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       197 ~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  274 (290)
                      ++|+|+ +++|++++.||.|++||+++++.+..+ .....|...|.+++|+ ++.+|++++.||.|++||+.+++.+..+
T Consensus       212 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~  290 (615)
T 1pgu_A          212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKW  290 (615)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            999999 999999999999999999999988877 3111278899999999 9999999999999999999999999999


Q ss_pred             ccC----CCcEEEEEEe
Q 022910          275 VSH----TDSIECIGFS  287 (290)
Q Consensus       275 ~~~----~~~v~~i~~s  287 (290)
                      ..+    ...+.++.|+
T Consensus       291 ~~~~~~~~~~~~~~~~~  307 (615)
T 1pgu_A          291 TLDKQQLGNQQVGVVAT  307 (615)
T ss_dssp             ECCTTCGGGCEEEEEEE
T ss_pred             cCCCCcccCceeEEEeC
Confidence            876    3677787775

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-34  Score=243.88  Aligned_cols=222  Identities=16%  Similarity=0.092  Sum_probs=190.4

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---eeeeecc-----------------------------------
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQG-----------------------------------  105 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~-----------------------------------  105 (290)
                      ..++.+++|+| ++.+|+++ .++.|++|++.+++   .+..+..                                   
T Consensus         4 ~~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            35889999999 55666555 47899999999887   5444432                                   


Q ss_pred             -------------------ccCCEEEEEECCCCCEE-EEEeCCCcEEEEcCC--CCceEEEEe--cCCCCEEEEEEcCCC
Q 022910          106 -------------------HKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPS--SGNLKCTLE--GPGGGVEWVSWHPRG  161 (290)
Q Consensus       106 -------------------~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~--~~~~~i~~i~~~~~~  161 (290)
                                         |...|++++|+|++++| ++++.||.|++|++.  +++.+..+.  .+...|.+++|+|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  161 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD  161 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence                               33379999999999996 889999999999999  888888876  566889999999999


Q ss_pred             CEEEEeeCCCeEEEEECCcccEEE----eeecCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC
Q 022910          162 HIVLAGSEDSTVWMWNADRAAYLN----MFSGHGSSVTCGDFTPD---GKTICTGSDDATLRVWNPKSGENIHVIRGHPY  234 (290)
Q Consensus       162 ~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  234 (290)
                      ++|++|+.+|.|++|++.++....    .+.+|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+..  .
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~  239 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF--G  239 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC--C
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec--C
Confidence            999999999999999998876544    77889999999999999   99999999999999999999887776432  2


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC-------------------------CCcEEEEEEecC
Q 022910          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH-------------------------TDSIECIGFSRS  289 (290)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------------------------~~~v~~i~~s~d  289 (290)
                      |...|++++|+ ++++|++|+.|+.|++||+.+++++..+..+                         ...|.+++|+|+
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  318 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN  318 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence            78899999999 9999999999999999999999999888632                         357999999997


Q ss_pred             C
Q 022910          290 E  290 (290)
Q Consensus       290 ~  290 (290)
                      +
T Consensus       319 ~  319 (450)
T 2vdu_B          319 L  319 (450)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.8e-33  Score=238.51  Aligned_cols=220  Identities=25%  Similarity=0.526  Sum_probs=202.6

Q ss_pred             CceeeeccCCcCE-EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           55 DSTHIFSGHSDEV-YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        55 ~~~~~~~~h~~~v-~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      .....+.+|.+.| .++.+   ++.+|++|+.||.|++|++.+++.+..+.+|...|.+++|+  +++|++++.||.|++
T Consensus       109 ~~~~~l~~h~~~v~~~~~~---~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v  183 (445)
T 2ovr_B          109 KSPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV  183 (445)
T ss_dssp             CCCEEEECSTTSCEEEEEE---ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred             ceeEEecccCCCcEEEEEE---cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence            4567899999875 66555   45789999999999999999999999999999999999996  679999999999999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  213 (290)
                      ||+.+++.+..+..|...|.++.|+  ++.+++|+.||.|++||+++++.+..+.+|...|.+++|  ++++|++++.||
T Consensus       184 wd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg  259 (445)
T 2ovr_B          184 WNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF  259 (445)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred             EECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence            9999999999999999999999995  578999999999999999999999999999999999999  688999999999


Q ss_pred             eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      .|++||+++++.+..+..   |...|.++.|  ++.+|++|+.||.|++||+++++++..+.+|...+.++.+++
T Consensus       260 ~i~iwd~~~~~~~~~~~~---~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  329 (445)
T 2ovr_B          260 MVKVWDPETETCLHTLQG---HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD  329 (445)
T ss_dssp             CEEEEEGGGTEEEEEECC---CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET
T ss_pred             EEEEEECCCCcEeEEecC---CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC
Confidence            999999999998888876   7789999999  788999999999999999999999999999999999998865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.1e-32  Score=223.81  Aligned_cols=230  Identities=21%  Similarity=0.356  Sum_probs=198.5

Q ss_pred             CCceeee--ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           54 DDSTHIF--SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        54 ~~~~~~~--~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      .+.++.+  .+|...|++++|+| ++.+|++|+.||+|++|++.+++.+..+.+|...+.++.+  ++..+++++.++.+
T Consensus        55 g~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~  131 (318)
T 4ggc_A           55 GDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHI  131 (318)
T ss_dssp             CCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred             CCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCce
Confidence            3444444  57888999999999 7889999999999999999999999999999998887666  56799999999999


Q ss_pred             EEEcCCCC-ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE----EEeeecCCCCeEEEEEcCCCC-E
Q 022910          132 QIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGK-T  205 (290)
Q Consensus       132 ~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~  205 (290)
                      ++|+.... ..+..+.+|...+..+.+++++++|++++.||.|++||+++++.    ......+...|.++.++|.+. .
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  211 (318)
T 4ggc_A          132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV  211 (318)
T ss_dssp             EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred             EeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcE
Confidence            99998876 45567788999999999999999999999999999999987653    344556788999999999654 3


Q ss_pred             E--EEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCcEEEEEccCCCcE
Q 022910          206 I--CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS--KDGSVHMVNITTGKVVSSLVSHTDSI  281 (290)
Q Consensus       206 l--~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~v  281 (290)
                      +  ++++.++.|++||...........    +...+..+.|+|.+..+++++  .|+.|++||+++++++.++.+|.+.|
T Consensus       212 ~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V  287 (318)
T 4ggc_A          212 LATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV  287 (318)
T ss_dssp             EEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE
T ss_pred             EEEEecCCCCEEEEEeccccccccccc----ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence            3  356678999999999888776665    567899999999988887654  79999999999999999999999999


Q ss_pred             EEEEEecCC
Q 022910          282 ECIGFSRSE  290 (290)
Q Consensus       282 ~~i~~s~d~  290 (290)
                      ++++|+|+|
T Consensus       288 ~~l~~spdg  296 (318)
T 4ggc_A          288 LSLTMSPDG  296 (318)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEcCCC
Confidence            999999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.4e-33  Score=239.40  Aligned_cols=212  Identities=21%  Similarity=0.384  Sum_probs=184.7

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee-------eeeeccccCCEEEEEECC-CCCEEEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-------ASEIQGHKDSVSSLAFSM-DGQLLASG  125 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~~~  125 (290)
                      ..+...+.+|...|++++|+|.+..+|++|+.||.|++|++..+..       ...+..|...|.+++|+| ++.+|+++
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~  250 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV  250 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence            5678889999999999999995555999999999999999987322       345668999999999999 67799999


Q ss_pred             eCCCcEEEEcCCCC---ceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCc-ccEEEeeecCCCCeEEEEEc
Q 022910          126 GLDGLVQIWDPSSG---NLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFT  200 (290)
Q Consensus       126 ~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~  200 (290)
                      +.+|.|++||++++   +.+..+..|...|++++|+|++. +|++|+.+|.|++||+++ ..++..+..|...|.+++|+
T Consensus       251 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~s  330 (430)
T 2xyi_A          251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS  330 (430)
T ss_dssp             ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEEC
T ss_pred             eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEEC
Confidence            99999999999987   57778888999999999999887 789999999999999998 56788888899999999999


Q ss_pred             CCCC-EEEEEeCCCeEEEEcCCCC--------------eeeEEEeCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 022910          201 PDGK-TICTGSDDATLRVWNPKSG--------------ENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVN  264 (290)
Q Consensus       201 ~~~~-~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd  264 (290)
                      |+++ +|++++.||.|++||+...              +.+..+.+   |...|++++|+|+++ +|++++.||.|++|+
T Consensus       331 p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG---HTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC---CSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC---CCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence            9884 7899999999999999862              33344433   788999999999998 899999999999999


Q ss_pred             cCCC
Q 022910          265 ITTG  268 (290)
Q Consensus       265 ~~~~  268 (290)
                      +...
T Consensus       408 ~~~~  411 (430)
T 2xyi_A          408 MAEN  411 (430)
T ss_dssp             ECHH
T ss_pred             cccc
Confidence            8653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-32  Score=229.14  Aligned_cols=213  Identities=17%  Similarity=0.283  Sum_probs=188.5

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccC------------------------
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD------------------------  108 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------------------------  108 (290)
                      ....+..+.+|...|.+++|+| ++.+|++++.||.|++|++.+++.+..+. +..                        
T Consensus        63 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~  140 (369)
T 3zwl_B           63 NGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKN  140 (369)
T ss_dssp             TCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTB
T ss_pred             CchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCC
Confidence            4567888999999999999999 78899999999999999998776554432 222                        


Q ss_pred             ------------------------------------CEEEEEECCCCCEEEEEeCCCcEEEEcCCC-CceEEEEecCCCC
Q 022910          109 ------------------------------------SVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGPGGG  151 (290)
Q Consensus       109 ------------------------------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~  151 (290)
                                                          .+.+++|+|++++|++++.+|.|++||+.+ .+.+..+..|...
T Consensus       141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  220 (369)
T 3zwl_B          141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS  220 (369)
T ss_dssp             CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC
T ss_pred             CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc
Confidence                                                677777777778888888889999999988 6778888889999


Q ss_pred             EEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC--------------eEEE
Q 022910          152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA--------------TLRV  217 (290)
Q Consensus       152 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~i  217 (290)
                      |.+++|+|++++|++++.+|.|++||+++++.+..+. +...+.+++|+|+++++++++.++              .|++
T Consensus       221 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  299 (369)
T 3zwl_B          221 ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARF  299 (369)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEE
T ss_pred             eeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence            9999999999999999999999999999999888887 778999999999999999999988              8999


Q ss_pred             EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 022910          218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV  271 (290)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  271 (290)
                      ||+.+++.+..+..   |...|++++|+|++++|++++.||.|++|++.++...
T Consensus       300 ~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  350 (369)
T 3zwl_B          300 YHKIFEEEIGRVQG---HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD  350 (369)
T ss_dssp             EETTTCCEEEEEEC---CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred             EecCCCcchhheec---ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence            99999999888887   7889999999999999999999999999999876543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.5e-33  Score=233.83  Aligned_cols=212  Identities=27%  Similarity=0.349  Sum_probs=180.4

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC---CCEEEEEeCCCcEEEEcCC
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD---GQLLASGGLDGLVQIWDPS  137 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~  137 (290)
                      .+|...|.+++|+|.++.+|++++.||.|++|++.+++....+. +...+.++.|+|.   +.++++++.+|.|++||+.
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            36999999999999777899999999999999999998888777 7788999999984   4499999999999999999


Q ss_pred             CCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCccc-EEEee---------------ecCCCCeEEEEEc
Q 022910          138 SGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAA-YLNMF---------------SGHGSSVTCGDFT  200 (290)
Q Consensus       138 ~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~i~~~~~~  200 (290)
                      +++.+..+..|...|.+++|+|+++ +|++++.+|.|++||+++.. .+..+               ..|...|.+++|+
T Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence            9999999999999999999999998 59999999999999998765 33333               5688899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEcCCCCee-----------------------------------------------eEEEeCCC
Q 022910          201 PDGKTICTGSDDATLRVWNPKSGEN-----------------------------------------------IHVIRGHP  233 (290)
Q Consensus       201 ~~~~~l~~~~~dg~i~i~d~~~~~~-----------------------------------------------~~~~~~~~  233 (290)
                      |++++|++++.||.|++||+.+++.                                               +..+.   
T Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~---  331 (408)
T 4a11_B          255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK---  331 (408)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC---
T ss_pred             CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec---
Confidence            9999999999999999999886543                                               22223   


Q ss_pred             CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       234 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      .|...|++++|+|++++|++|+.||.|++|++.+++++.....
T Consensus       332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  374 (408)
T 4a11_B          332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE  374 (408)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------
T ss_pred             cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence            3778999999999999999999999999999999988765543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-33  Score=238.97  Aligned_cols=217  Identities=14%  Similarity=0.138  Sum_probs=174.5

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-----------------------------eeeeeec-cccCCE
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-----------------------------DWASEIQ-GHKDSV  110 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----------------------------~~~~~~~-~~~~~i  110 (290)
                      +.-...|.+++|+| ++.++|+++.|++|+  +...+                             +....+. .|...|
T Consensus        12 ~~~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V   88 (588)
T 2j04_A           12 KEFEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYP   88 (588)
T ss_dssp             CCCSSSSCCEEECT-TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCE
T ss_pred             hHhhccEEEEEECC-CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcE
Confidence            34456788888888 778888888888885  33222                             1111122 357889


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCC-----CEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---
Q 022910          111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG-----GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---  182 (290)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---  182 (290)
                      .+++|+|+|++||+++.||.|++|+...  ++..+. |..     .+.+++|+|+|++|++|+.||+|++|++.++.   
T Consensus        89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~  165 (588)
T 2j04_A           89 RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT  165 (588)
T ss_dssp             EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccc
Confidence            9999999999999999999999999644  566666 654     49999999999999999999999999999875   


Q ss_pred             ----EEEee----ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee---eEEEeCCCCcccCeEEEEEcCCCCEE
Q 022910          183 ----YLNMF----SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLA  251 (290)
Q Consensus       183 ----~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l  251 (290)
                          .+..+    .+|...|.+++|+|+|  +++++.|+.|++|++..+..   ...+...  |...|.+++|+  +++|
T Consensus       166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~--h~~~V~svaFs--g~~L  239 (588)
T 2j04_A          166 PEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA--SRRKITDLKIV--DYKV  239 (588)
T ss_dssp             CCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC--CSSCCCCEEEE--TTEE
T ss_pred             ccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc--ccCcEEEEEEE--CCEE
Confidence                35665    5677899999999999  88889999999999988774   2445321  67889999999  6899


Q ss_pred             EEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEE--ecCC
Q 022910          252 LSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF--SRSE  290 (290)
Q Consensus       252 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~--s~d~  290 (290)
                      |+++ ++.|++|++.+++......+|.+.|++++|  +|++
T Consensus       240 ASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~  279 (588)
T 2j04_A          240 VLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKES  279 (588)
T ss_dssp             EEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSC
T ss_pred             EEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCC
Confidence            9887 699999999988875544489999999999  9885

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.5e-32  Score=228.81  Aligned_cols=208  Identities=12%  Similarity=0.116  Sum_probs=165.8

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEE-EEEeCCCcEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQ  132 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~  132 (290)
                      ..++..+.+|...|++++|+| ++.+|++|+.++ +++|++.+++......  ...+..+++.++++.+ ++++.+++|+
T Consensus         9 ~~~~~~~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~   84 (355)
T 3vu4_A            9 RNPIVPENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVH   84 (355)
T ss_dssp             ----------CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred             cCCccccccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEE
Confidence            445667789999999999999 778999888665 7899998876665443  2357788899888877 5677789999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCC-----------------------------------CEEEE--eeCCCeEEE
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRG-----------------------------------HIVLA--GSEDSTVWM  175 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-----------------------------------~~l~~--~~~dg~i~i  175 (290)
                      +||+.+++.+..+. +...|.+++|+++.                                   .++++  |+.+|.|++
T Consensus        85 iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           85 IWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             EEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred             EEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence            99999999988887 55678888887642                                   23444  578899999


Q ss_pred             EECCccc---------------E-EEeeecCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEcCCCCeeeEEEe-CCCCccc
Q 022910          176 WNADRAA---------------Y-LNMFSGHGSSVTCGDFTPDGKTICTGSDDAT-LRVWNPKSGENIHVIR-GHPYHTE  237 (290)
Q Consensus       176 ~d~~~~~---------------~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~-~~~~~~~  237 (290)
                      ||++++.               + +..+.+|...|.+++|+|++++|++|+.||+ |++||+++++.+..+. +.  |..
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~--h~~  241 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL--DRA  241 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT--CCS
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CCC
Confidence            9998765               2 6778899999999999999999999999998 9999999999988887 32  678


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910          238 GLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                      .|++++|+|++++|++++.|++|++||+..+
T Consensus       242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             cEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            9999999999999999999999999999765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-33  Score=231.97  Aligned_cols=201  Identities=8%  Similarity=0.037  Sum_probs=165.8

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEcc---------CCeeeeeec-cccCCEEEEEECC--CCCEEEEEeCCCcE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRIN---------QGDWASEIQ-GHKDSVSSLAFSM--DGQLLASGGLDGLV  131 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~---------~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~dg~i  131 (290)
                      ...|.++.|+| .   +++++.|++|++|+..         +++.+..+. .|..+|.+++|+|  ++++|++++.||+|
T Consensus        76 ~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i  151 (343)
T 3lrv_A           76 TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTI  151 (343)
T ss_dssp             EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCE
T ss_pred             cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcE
Confidence            46778888888 3   8899999999999765         344343333 5678999999999  99999999999999


Q ss_pred             EEEcCCCCceEEEEec-CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE-Eeeec-CCCCeEEEEEcCCCCEEEE
Q 022910          132 QIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-NMFSG-HGSSVTCGDFTPDGKTICT  208 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~  208 (290)
                      ++||+.+++....... +...+.+++|+|++.+|++|+.||.|++||+++++.+ ..+.. |..+|.+++|+|++.+|++
T Consensus       152 ~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s  231 (343)
T 3lrv_A          152 GFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV  231 (343)
T ss_dssp             EEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE
Confidence            9999999998766643 4557999999999999999999999999999999877 77887 9999999999999999999


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEeCCCCcccCe--EEEEEcCCCCEEEEEeC-CCcEEEEEcCCCc
Q 022910          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGL--TCLTISADSTLALSGSK-DGSVHMVNITTGK  269 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~  269 (290)
                      ++ ++.|++||+++++.+..+.....+...+  .+++|+|++++|++++. ++.|++|++.+..
T Consensus       232 ~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          232 EC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             EE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             Ee-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence            99 5599999999987765554322222333  46999999999999998 9999999986543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-33  Score=237.48  Aligned_cols=215  Identities=13%  Similarity=0.123  Sum_probs=177.4

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccC-----CEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD-----SVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (290)
                      +|...|.+++|+| ++.+||+++.||.|++|+...  .+..+. |..     .|.+++|+|+|++||+|+.||+|+||++
T Consensus        83 ~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~  158 (588)
T 2j04_A           83 QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI  158 (588)
T ss_dssp             SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred             CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence            5588999999999 888999999999999999654  555566 665     4999999999999999999999999999


Q ss_pred             CCCce-------EEEE----ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE---EEee-ecCCCCeEEEEEcC
Q 022910          137 SSGNL-------KCTL----EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY---LNMF-SGHGSSVTCGDFTP  201 (290)
Q Consensus       137 ~~~~~-------~~~~----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~i~~~~~~~  201 (290)
                      .++..       +.++    .+|...|.+++|+|++  +++++.|+.|++|++.++..   .+.+ .+|...|.+++|+ 
T Consensus       159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-  235 (588)
T 2j04_A          159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-  235 (588)
T ss_dssp             CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred             CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence            98863       5666    5567899999999999  88899999999999988773   3455 3688899999999 


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCC------------
Q 022910          202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI--SADSTLALSGSKDGSVHMVNITT------------  267 (290)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~~wd~~~------------  267 (290)
                       +++|++++ ++.|++||+.+++......+   |...+..++|  +|++..|++++.+|+ ++|....            
T Consensus       236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~g---h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~  309 (588)
T 2j04_A          236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTG---SLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPY  309 (588)
T ss_dssp             -TTEEEEEC-SSEEEEEETTTTEEEEEECS---CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHH
T ss_pred             -CCEEEEEe-CCeEEEEECCCCeEEEEEcC---CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEE
Confidence             68899887 69999999998776433334   8899999999  999999999999999 9998742            


Q ss_pred             -----------CcEEEEEccCCCcEEEEEEecCC
Q 022910          268 -----------GKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       268 -----------~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                                 +..+..+.+ ...|++++|||||
T Consensus       310 ~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG  342 (588)
T 2j04_A          310 LEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDG  342 (588)
T ss_dssp             HHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTS
T ss_pred             cCCEEEEEECCCCceeeecc-ceEEEEEEECCCC
Confidence                       111122222 3459999999997

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=234.63  Aligned_cols=207  Identities=11%  Similarity=0.067  Sum_probs=172.1

Q ss_pred             CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC---------CCceEEEEe
Q 022910           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS---------SGNLKCTLE  146 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~  146 (290)
                      ++.+|++|+.||.|++||+.+++.+..+.  ...|.++.|+|.   +++++.|++|++|+..         +++.+..+.
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~  121 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE  121 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence            66789999999999999999998888776  466788889888   9999999999999665         555455554


Q ss_pred             -cCCCCEEEEEEcC--CCCEEEEeeCCCeEEEEECCcccEEEeee-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910          147 -GPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (290)
Q Consensus       147 -~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  222 (290)
                       .|..+|.+++|+|  ++++|++++.||.|++||+++++.+.... .+...+.+++|+|++.+|++|+.||.|++||+++
T Consensus       122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~  201 (343)
T 3lrv_A          122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS  201 (343)
T ss_dssp             CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred             cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence             5667899999999  99999999999999999999998876664 3556899999999999999999999999999999


Q ss_pred             Ceee-EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc---CCCcEE--EEEEecCC
Q 022910          223 GENI-HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS---HTDSIE--CIGFSRSE  290 (290)
Q Consensus       223 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~v~--~i~~s~d~  290 (290)
                      ++.+ ..+..  .|...|++++|+|++.+|++++ ++.|++||+++++.+..+..   |...+.  +++|+|+|
T Consensus       202 ~~~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  272 (343)
T 3lrv_A          202 PDQASSRFPV--DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG  272 (343)
T ss_dssp             TTSCCEECCC--CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS
T ss_pred             CCCCccEEec--cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC
Confidence            9876 56654  2678999999999999999999 55999999999887665543   434444  69999986

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.2e-32  Score=220.65  Aligned_cols=175  Identities=14%  Similarity=0.192  Sum_probs=142.4

Q ss_pred             CCcEEEEEcc-CCeeeeeeccccCCEEEEEECC---CCCEEEEEeCCCcEEEEcCCCCceEEEEecCC---CCEEEEEEc
Q 022910           86 DDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSM---DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG---GGVEWVSWH  158 (290)
Q Consensus        86 dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~i~~i~~~  158 (290)
                      ++.|++|++. .++.+..+..|...++.++|+|   ++.+|++++.|++|+|||+.+++.+.++.+|.   ..+.+++|+
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS  235 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS  235 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred             CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence            7788888884 4777777777888888888888   66889999999999999999999999998654   367788999


Q ss_pred             CCCCEE------------EEeeCCCeEEEEECCcccEEEee-----ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC
Q 022910          159 PRGHIV------------LAGSEDSTVWMWNADRAAYLNMF-----SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK  221 (290)
Q Consensus       159 ~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  221 (290)
                      |++.++            ++|+.|++|++||..+++.+..+     .+|...+.+..++  +.++++++.|++|+|||+.
T Consensus       236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~  313 (356)
T 2w18_A          236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLL  313 (356)
T ss_dssp             ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECC
Confidence            999876            56778999999999999887665     3555555544444  7889999999999999999


Q ss_pred             CCeeeEEEeCCCCcccC-eEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          222 SGENIHVIRGHPYHTEG-LTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      +++.+.++.+   |... +.+++|+|+|++|++|+.|++|++||+
T Consensus       314 tGk~l~tL~g---H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          314 LGQCTALLPP---VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TCSEEEEECC---C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCcEEEEecC---CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999986   4444 456899999999999999999999995

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=249.88  Aligned_cols=214  Identities=19%  Similarity=0.291  Sum_probs=187.6

Q ss_pred             CCceeeeccCCcCEEEEEECCC-CCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCC--CCEEEEEeCC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMD--GQLLASGGLD  128 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d  128 (290)
                      ......+.+|.++|++++|+|. ++.+|++|+.||.|++|++.+++  ....+..|...|++++|+|+  ++++++++.|
T Consensus        43 ~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d  122 (753)
T 3jro_A           43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  122 (753)
T ss_dssp             EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence            4567889999999999999983 27899999999999999999987  67778889999999999999  9999999999


Q ss_pred             CcEEEEcCCCC--ceEEEEecCCCCEEEEEEcC-------------CCCEEEEeeCCCeEEEEECCcc----cEEEeeec
Q 022910          129 GLVQIWDPSSG--NLKCTLEGPGGGVEWVSWHP-------------RGHIVLAGSEDSTVWMWNADRA----AYLNMFSG  189 (290)
Q Consensus       129 g~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~-------------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~  189 (290)
                      |.|++||+.++  .....+..|...|.+++|+|             ++.+|++|+.||.|++||++++    .....+.+
T Consensus       123 g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~  202 (753)
T 3jro_A          123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  202 (753)
T ss_dssp             SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC
Confidence            99999999887  34456678889999999999             5899999999999999999876    56677888


Q ss_pred             CCCCeEEEEEcCC---CCEEEEEeCCCeEEEEcCCCCeee--EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910          190 HGSSVTCGDFTPD---GKTICTGSDDATLRVWNPKSGENI--HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       190 ~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  264 (290)
                      |..+|.+++|+|+   +.+|++++.||.|++||++++...  ..+.....+...|++++|+|++++|++|+.||.|++|+
T Consensus       203 h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          203 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence            9999999999999   899999999999999999886421  12222233778899999999999999999999999999


Q ss_pred             cCC
Q 022910          265 ITT  267 (290)
Q Consensus       265 ~~~  267 (290)
                      +.+
T Consensus       283 ~~~  285 (753)
T 3jro_A          283 ENL  285 (753)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.3e-31  Score=226.54  Aligned_cols=229  Identities=22%  Similarity=0.379  Sum_probs=186.6

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      ..+.++.+.+|...|.+++|++   .+|++|+.|+.+++|+.... ..+..+.+|...+..+.|+|+++++++++.|+.+
T Consensus       178 ~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v  254 (420)
T 4gga_A          178 QQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV  254 (420)
T ss_dssp             TTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccc
Confidence            3567888999999999999865   68999999999999998864 4567788999999999999999999999999999


Q ss_pred             EEEcCCCCc----eEEEEecCCCCEEEEEEcCCCC-EEEE--eeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCC
Q 022910          132 QIWDPSSGN----LKCTLEGPGGGVEWVSWHPRGH-IVLA--GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       132 ~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  204 (290)
                      ++|+..+++    .+.....|...|.+++|+|.+. ++++  |+.|+.|++||+++++....+..+ ..+.++.|+|+++
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~  333 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYK  333 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTT
T ss_pred             eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCC
Confidence            999998765    3456677889999999999654 5554  457999999999999988888754 6788999999999


Q ss_pred             EEEEEe--CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEE
Q 022910          205 TICTGS--DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE  282 (290)
Q Consensus       205 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~  282 (290)
                      .+++++  .|+.|+|||+.+++++..+.+   |...|++++|+|+|++|++|+.|++|++||+....+.+....+...+.
T Consensus       334 ~lv~~sg~~d~~I~iwd~~~~~~v~~l~g---H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~  410 (420)
T 4gga_A          334 ELISGHGFAQNQLVIWKYPTMAKVAELKG---HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAA  410 (420)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCEEEEECC---CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-----------
T ss_pred             eEEEEEecCCCEEEEEECCCCcEEEEEcC---CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcc
Confidence            988765  689999999999999999987   788999999999999999999999999999988777666666655554


Q ss_pred             EEEEec
Q 022910          283 CIGFSR  288 (290)
Q Consensus       283 ~i~~s~  288 (290)
                      ...|..
T Consensus       411 ~~s~~~  416 (420)
T 4gga_A          411 KSSLIH  416 (420)
T ss_dssp             ------
T ss_pred             ccccCC
Confidence            444433

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2e-30  Score=218.36  Aligned_cols=228  Identities=16%  Similarity=0.173  Sum_probs=194.0

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQ  132 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~  132 (290)
                      .+.+..+.+|. .+.+++|+|++..++++++.++.|++||+.+++.+..+..+. .+.+++|+|++++|+++ +.++.|+
T Consensus        22 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~   99 (391)
T 1l0q_A           22 NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLS   99 (391)
T ss_dssp             TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEE
Confidence            34566667665 589999999555566888899999999999999888887554 89999999999987554 5679999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEE-EEEe
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGS  210 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~  210 (290)
                      +||+.+++.+..+..+ ..+.+++|+|++++| ++++.++.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++
T Consensus       100 v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~  177 (391)
T 1l0q_A          100 VIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF  177 (391)
T ss_dssp             EEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET
T ss_pred             EEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC
Confidence            9999999988887755 468999999999977 67888999999999999988888755 567999999999887 5677


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCcEEEEEccCCCcEEEEEEe
Q 022910          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS---KDGSVHMVNITTGKVVSSLVSHTDSIECIGFS  287 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s  287 (290)
                      .++.|++||+++++....+.    +...+.+++|+|++++|++++   .++.|++||+.+++.+..+..|. .+.+++|+
T Consensus       178 ~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s  252 (391)
T 1l0q_A          178 DSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVT  252 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEEC
T ss_pred             CCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEc
Confidence            89999999999998877776    456789999999999999888   68999999999999999998765 58999999


Q ss_pred             cCC
Q 022910          288 RSE  290 (290)
Q Consensus       288 ~d~  290 (290)
                      |+|
T Consensus       253 ~dg  255 (391)
T 1l0q_A          253 PDG  255 (391)
T ss_dssp             TTS
T ss_pred             cCC
Confidence            986

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-32  Score=252.44  Aligned_cols=222  Identities=13%  Similarity=0.162  Sum_probs=180.6

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee--eee----c-----cccCCEEEEEECCCCCEEEEEeC
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEI----Q-----GHKDSVSSLAFSMDGQLLASGGL  127 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~----~-----~~~~~i~~~~~~~~~~~l~~~~~  127 (290)
                      .+.||...+.+++|+| ++.+|++|+.|++|++||+.++...  ..+    .     +|...|.+++|+|++++||+|+.
T Consensus       430 ~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~  508 (902)
T 2oaj_A          430 LLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE  508 (902)
T ss_dssp             SCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET
T ss_pred             cccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec
Confidence            4567777777778888 8889999999999999999876422  111    1     78899999999999999999999


Q ss_pred             CCcEEEEcCCCCc---------------------------------------------eEEEEecCCCCEEEEEEcCCCC
Q 022910          128 DGLVQIWDPSSGN---------------------------------------------LKCTLEGPGGGVEWVSWHPRGH  162 (290)
Q Consensus       128 dg~i~i~d~~~~~---------------------------------------------~~~~~~~~~~~i~~i~~~~~~~  162 (290)
                      ||+|+||++.+++                                             ++..+.+|.+.|++++|+|+| 
T Consensus       509 DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-  587 (902)
T 2oaj_A          509 TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-  587 (902)
T ss_dssp             TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-
T ss_pred             CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-
Confidence            9999999997662                                             356778899999999999999 


Q ss_pred             EEEEeeCCCeEEEEECCcccEEE-----eee-cCCCCeEEEEEc-----CCC---CEEEEEeCCCeEEEEcC---CCCee
Q 022910          163 IVLAGSEDSTVWMWNADRAAYLN-----MFS-GHGSSVTCGDFT-----PDG---KTICTGSDDATLRVWNP---KSGEN  225 (290)
Q Consensus       163 ~l~~~~~dg~i~i~d~~~~~~~~-----~~~-~~~~~i~~~~~~-----~~~---~~l~~~~~dg~i~i~d~---~~~~~  225 (290)
                      +||+|+.|++|++||+++...+.     .+. +|...|++++|+     |+|   .+|++|+.|++|++||+   .+++.
T Consensus       588 ~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~  667 (902)
T 2oaj_A          588 FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF  667 (902)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence            99999999999999998876653     233 788999999999     885   89999999999999999   77777


Q ss_pred             eEEEeCCCC--cccCeEEEE-Ec----------------------CCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCc
Q 022910          226 IHVIRGHPY--HTEGLTCLT-IS----------------------ADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS  280 (290)
Q Consensus       226 ~~~~~~~~~--~~~~v~~~~-~~----------------------~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  280 (290)
                      ...+.++..  +...|..++ |+                      +++.+|+++  +..|++|++.+++++++...|...
T Consensus       668 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~  745 (902)
T 2oaj_A          668 DVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYPLA  745 (902)
T ss_dssp             EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSCEE
T ss_pred             EEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEccccee
Confidence            777765421  245666665 55                      445444444  779999999999999888777666


Q ss_pred             EEEE
Q 022910          281 IECI  284 (290)
Q Consensus       281 v~~i  284 (290)
                      +.++
T Consensus       746 ~~~v  749 (902)
T 2oaj_A          746 ATGL  749 (902)
T ss_dssp             EEEE
T ss_pred             eeEE
Confidence            6665

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.1e-31  Score=221.86  Aligned_cols=204  Identities=17%  Similarity=0.219  Sum_probs=173.0

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEE--CCCCCEEEEEeCCCcEEEE
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF--SMDGQLLASGGLDGLVQIW  134 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~  134 (290)
                      ...+.+|...|++++|+| ++.+|++++.||.|++|++.+++.+. +..|...|.+++|  +|++++|++++.||.|++|
T Consensus        79 ~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw  156 (368)
T 3mmy_A           79 PKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW  156 (368)
T ss_dssp             EEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             EEEeccccCCEEEEEECc-CCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence            378899999999999999 88899999999999999999988776 4559999999999  8999999999999999999


Q ss_pred             cCCCCceEEEEecCC-----------------------------------------CCEEEEEEcCCCCE----EEEeeC
Q 022910          135 DPSSGNLKCTLEGPG-----------------------------------------GGVEWVSWHPRGHI----VLAGSE  169 (290)
Q Consensus       135 d~~~~~~~~~~~~~~-----------------------------------------~~i~~i~~~~~~~~----l~~~~~  169 (290)
                      |+.+++.+..+..+.                                         ..+.++.+.+....    +++++.
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          157 DTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             CSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred             ECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence            999888776665433                                         22344444443333    999999


Q ss_pred             CCeEEEEECCcc---cEEEeeecCCC------------CeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC
Q 022910          170 DSTVWMWNADRA---AYLNMFSGHGS------------SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY  234 (290)
Q Consensus       170 dg~i~i~d~~~~---~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  234 (290)
                      +|.|++|+++..   ..+..+..|..            +|.+++|+|++++|++++.||.|++||+.+++.+..+..   
T Consensus       237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---  313 (368)
T 3mmy_A          237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ---  313 (368)
T ss_dssp             TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC---
T ss_pred             CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC---
Confidence            999999999877   45666666665            799999999999999999999999999999998888776   


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      |...|++++|+|++++|++++.|+..+.|++
T Consensus       314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          314 LDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             CSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             CCCCceEEEECCCCCeEEEEecccccccccc
Confidence            7889999999999999999999886555544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3.5e-30  Score=219.68  Aligned_cols=224  Identities=9%  Similarity=0.051  Sum_probs=195.6

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEE-EeCCCcEEEEcCC
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDGLVQIWDPS  137 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~  137 (290)
                      .+.+|.+.|.+++|+| ++.++++++.++.|++|++.+++.+..+..|...+.+++|+|+++++++ ++.++.|++||+.
T Consensus       164 ~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  242 (433)
T 3bws_A          164 KYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK  242 (433)
T ss_dssp             HHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence            4568999999999988 8889999999999999999999999888889999999999999998754 4579999999999


Q ss_pred             CCceEEEEecCCCCEEEEEEcCCCCEEEEee--------CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEE-EE
Q 022910          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CT  208 (290)
Q Consensus       138 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~  208 (290)
                      +++.+..+..+ ..+.+++|+|++++|++++        .+|.|++||+++++.+..+. +...+.+++|+|+++.+ ++
T Consensus       243 ~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~  320 (433)
T 3bws_A          243 TKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVS  320 (433)
T ss_dssp             TTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEE
T ss_pred             CCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEE
Confidence            99888777754 4599999999999999988        48899999999988776653 55688999999999755 56


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC---------------CCcEEEEEcCCCcEEEE
Q 022910          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---------------DGSVHMVNITTGKVVSS  273 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~~wd~~~~~~~~~  273 (290)
                      ++.++.|++||+.+++....+.    +...+.+++|+|++++|++++.               ||.|++||+.+++.+..
T Consensus       321 ~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~  396 (433)
T 3bws_A          321 DMCCSKIEVYDLKEKKVQKSIP----VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF  396 (433)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred             ecCCCEEEEEECCCCcEEEEec----CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE
Confidence            6889999999999998887776    5677999999999999888876               57999999999999998


Q ss_pred             EccCCCcEEEEEEecCC
Q 022910          274 LVSHTDSIECIGFSRSE  290 (290)
Q Consensus       274 ~~~~~~~v~~i~~s~d~  290 (290)
                      +.. ...+.+++|+|+|
T Consensus       397 ~~~-~~~~~~~~~s~dg  412 (433)
T 3bws_A          397 WEA-GNQPTGLDVSPDN  412 (433)
T ss_dssp             EEC-SSSEEEEEECTTS
T ss_pred             ecC-CCCCceEEEcCCC
Confidence            886 4679999999986

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=7.4e-32  Score=227.59  Aligned_cols=206  Identities=15%  Similarity=0.114  Sum_probs=155.0

Q ss_pred             ceeeeccCCcCEEEEEECC-------CCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC-EEEEEeC
Q 022910           56 STHIFSGHSDEVYSVACSP-------TDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGL  127 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~-------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~  127 (290)
                      .+..+.||.+.|++++|+|       .++++||+|+.|++|+|||+.++..+..+..|..+|.+++|+|++. +|++++.
T Consensus       128 ~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  207 (393)
T 4gq1_A          128 VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER  207 (393)
T ss_dssp             EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET
T ss_pred             eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC
Confidence            3445789999999999987       2568999999999999999999888888888999999999999875 7999999


Q ss_pred             CCcEEEEcCCCCceEEE-------------------------EecCCCCEEEEEEc-CCCCEEEEeeCCCeEEEEECCcc
Q 022910          128 DGLVQIWDPSSGNLKCT-------------------------LEGPGGGVEWVSWH-PRGHIVLAGSEDSTVWMWNADRA  181 (290)
Q Consensus       128 dg~i~i~d~~~~~~~~~-------------------------~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~i~d~~~~  181 (290)
                      ||+|++||+.+++....                         ..+|...+.++.|+ |+++.|++++.|+.+++||+..+
T Consensus       208 d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~  287 (393)
T 4gq1_A          208 NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN  287 (393)
T ss_dssp             TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred             CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence            99999999988754332                         13456678888886 79999999999999999999887


Q ss_pred             cEEEeeecCCCCeEEE------------------EEcC--CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEE
Q 022910          182 AYLNMFSGHGSSVTCG------------------DFTP--DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC  241 (290)
Q Consensus       182 ~~~~~~~~~~~~i~~~------------------~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  241 (290)
                      +....+..+...+..+                  .|+|  ++.++++|+.||.|++||+.+++....+..   |..+|.+
T Consensus       288 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~---~~~~V~s  364 (393)
T 4gq1_A          288 NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ---LGMPIVD  364 (393)
T ss_dssp             ----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE---CSSCEEE
T ss_pred             CCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC---CCCcEEE
Confidence            6655554444333333                  3333  334567788899999999999988777665   6789999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          242 LTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      ++|+|+|++||+++.+| +.+|.+
T Consensus       365 vafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          365 FCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEEcCCCCEEEEEeCCC-eEEEEE
Confidence            99999999999998766 556654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4e-30  Score=219.31  Aligned_cols=228  Identities=14%  Similarity=0.087  Sum_probs=196.6

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee-----eeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS-----EIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      ..+..+..+. .+.+++|+| ++.++++++.++.|++||+.+++...     .+.+|...|.+++|+|+++++++++.++
T Consensus       114 ~~~~~~~~~~-~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  191 (433)
T 3bws_A          114 RFISRFKTGF-QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN  191 (433)
T ss_dssp             EEEEEEECSS-CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred             eEEEEEcCCC-CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence            3444455444 456999999 88999999999999999999988776     4457888999999999999999999999


Q ss_pred             cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEE-eeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE
Q 022910          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  208 (290)
                      .|++||+.+++.+..+..+...+.+++|+|+++++++ ++.++.|++||+++++.+..+.. ...+.+++|+|++++|++
T Consensus       192 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~  270 (433)
T 3bws_A          192 AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYI  270 (433)
T ss_dssp             EEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEE
Confidence            9999999999999999888889999999999998855 44799999999999988887775 456899999999999998


Q ss_pred             Ee--------CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCcEEEEEccCCC
Q 022910          209 GS--------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL-ALSGSKDGSVHMVNITTGKVVSSLVSHTD  279 (290)
Q Consensus       209 ~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  279 (290)
                      ++        .||.|++||+.+++....+.    +...+.+++|+|+++. +++++.++.|++||+.+++.+..+. +..
T Consensus       271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~  345 (433)
T 3bws_A          271 AQFSASNQESGGGRLGIYSMDKEKLIDTIG----PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFD  345 (433)
T ss_dssp             EEEESCTTCSCCEEEEEEETTTTEEEEEEE----EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSS
T ss_pred             EECCCCccccCCCeEEEEECCCCcEEeecc----CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCC
Confidence            87        58899999999998777664    5668899999999975 4666889999999999999888886 577


Q ss_pred             cEEEEEEecCC
Q 022910          280 SIECIGFSRSE  290 (290)
Q Consensus       280 ~v~~i~~s~d~  290 (290)
                      .+.+++|+|+|
T Consensus       346 ~~~~~~~s~dg  356 (433)
T 3bws_A          346 KPNTIALSPDG  356 (433)
T ss_dssp             SEEEEEECTTS
T ss_pred             CCCeEEEcCCC
Confidence            89999999986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.1e-28  Score=205.98  Aligned_cols=219  Identities=13%  Similarity=0.135  Sum_probs=184.8

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEE-EEEeCCCcEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQ  132 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~  132 (290)
                      .+.+..+..|. .+.+++|+|++..++++++.++.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++.++.|+
T Consensus        64 ~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~  141 (391)
T 1l0q_A           64 NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVS  141 (391)
T ss_dssp             TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEE
Confidence            34455555555 99999999955556667778899999999999988877744 568999999999977 6778899999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe-
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-  210 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  210 (290)
                      +||+.+++.+..+..+. .+.+++|+|++++| ++++.++.|++||+++++.+..+. +...+.+++|+|++++|++++ 
T Consensus       142 ~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          142 VINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             EEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEE
T ss_pred             EEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEec
Confidence            99999999888887654 57999999999877 567788999999999998887776 456889999999999999887 


Q ss_pred             --CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEEccCCCc
Q 022910          211 --DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSKDGSVHMVNITTGKVVSSLVSHTDS  280 (290)
Q Consensus       211 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  280 (290)
                        .++.|++||+.+++.+..+..    ...+.+++|+|++++| ++++.|+.|++||+.+++++..+..|..+
T Consensus       220 ~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~  288 (391)
T 1l0q_A          220 DKYFNTVSMIDTGTNKITARIPV----GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP  288 (391)
T ss_dssp             CSSCCEEEEEETTTTEEEEEEEC----CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             CcCCCcEEEEECCCCeEEEEEec----CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence              689999999999988888775    2357899999999877 56688999999999999999999877654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=3.8e-29  Score=212.37  Aligned_cols=227  Identities=18%  Similarity=0.211  Sum_probs=187.3

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCC---cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEE-EEeCC
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLD  128 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d  128 (290)
                      .....+.+.+|...|.+++|+| ++..|++++.++   .|++||+.+++.. .+..|...+.+++|+|++++|+ +++.+
T Consensus       167 ~g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~  244 (415)
T 2hqs_A          167 DGYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKT  244 (415)
T ss_dssp             TSCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             CCCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecC
Confidence            3456788889999999999999 777788887775   9999999988765 4666888999999999999888 56655


Q ss_pred             Cc--EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-CC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCC
Q 022910          129 GL--VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG  203 (290)
Q Consensus       129 g~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  203 (290)
                      +.  |++||+.+++. ..+..+...+.+++|+|++++|++++. ++  .|++||+.+++. ..+..+...+.+++|+|+|
T Consensus       245 g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG  322 (415)
T 2hqs_A          245 GSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDG  322 (415)
T ss_dssp             SSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTS
T ss_pred             CCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCC
Confidence            54  99999998876 566677788999999999999988876 44  788889988764 4455567789999999999


Q ss_pred             CEEEEEeCC---CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccC
Q 022910          204 KTICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       204 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~  277 (290)
                      ++|++++.+   ..|++||+.+++.. .+..   + ..+.+++|+|+|++|++++.++   .|++||+. ++....+..|
T Consensus       323 ~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~---~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~  396 (415)
T 2hqs_A          323 KFMVMVSSNGGQQHIAKQDLATGGVQ-VLSS---T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT  396 (415)
T ss_dssp             SEEEEEEECSSCEEEEEEETTTCCEE-ECCC---S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCS
T ss_pred             CEEEEEECcCCceEEEEEECCCCCEE-EecC---C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCC
Confidence            999887764   58999999988763 3433   3 2789999999999999988877   79999986 6667889999


Q ss_pred             CCcEEEEEEecC
Q 022910          278 TDSIECIGFSRS  289 (290)
Q Consensus       278 ~~~v~~i~~s~d  289 (290)
                      .+.|++++|+|-
T Consensus       397 ~~~v~~~~~~~~  408 (415)
T 2hqs_A          397 DGQVKFPAWSPY  408 (415)
T ss_dssp             SSEEEEEEECCC
T ss_pred             CCCCcCCccccc
Confidence            999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.4e-28  Score=200.94  Aligned_cols=231  Identities=21%  Similarity=0.351  Sum_probs=190.3

Q ss_pred             CCCCCceeeecc--CCc--CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--cccCCEEEEEECCCCCEEEE
Q 022910           51 EQPDDSTHIFSG--HSD--EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLAS  124 (290)
Q Consensus        51 ~~~~~~~~~~~~--h~~--~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~  124 (290)
                      ..|..|.+.|.+  ..+  .+++|+|++ ++ +||+|. |++|+|||+.+++.+..+.  .|...|++++|+|++++|++
T Consensus         8 ~~p~~p~rvldap~~~~d~y~~~l~WS~-~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~s   84 (318)
T 4ggc_A            8 YIPSLPDRILDAPEIRNDYYLNLVDWSS-GN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV   84 (318)
T ss_dssp             CCCSSCSEEEECTTCCCCTTCBCEEECT-TS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred             ccCCCCCEEeeCCCCcccccceEEEECC-CC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEE
Confidence            456667777753  333  257899998 44 777764 8999999999998877654  67788999999999999999


Q ss_pred             EeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcCCC
Q 022910          125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDG  203 (290)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~  203 (290)
                      |+.||+|++|++.+++.+..+.+|...+.++.+  .+..+++++.++.+++|+.... ..+..+.+|...+..+.+++++
T Consensus        85 gs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (318)
T 4ggc_A           85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  162 (318)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             EECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence            999999999999999999999999988877655  5679999999999999998875 4567788899999999999999


Q ss_pred             CEEEEEeCCCeEEEEcCCCCeee----EEEeCCCCcccCeEEEEEcCCCCE---EEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          204 KTICTGSDDATLRVWNPKSGENI----HVIRGHPYHTEGLTCLTISADSTL---ALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~---l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      ++|++++.||.|++||+++++..    .....   +...|.++.++|.+..   +++++.++.|++|+........... 
T Consensus       163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-  238 (318)
T 4ggc_A          163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ---HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-  238 (318)
T ss_dssp             SEEEEEETTSCEEEEESSCBTTBSCCSEEECC---CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-
T ss_pred             CEEEEEecCcceeEEECCCCcccccceeeecc---cCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-
Confidence            99999999999999999876532    22222   6778999999996543   3456778999999999888777655 


Q ss_pred             CCCcEEEEEEecCC
Q 022910          277 HTDSIECIGFSRSE  290 (290)
Q Consensus       277 ~~~~v~~i~~s~d~  290 (290)
                      +...+..+.|+|++
T Consensus       239 ~~~~v~~~~~~~~~  252 (318)
T 4ggc_A          239 AHSQVCSILWSPHY  252 (318)
T ss_dssp             CSSCEEEEEEETTT
T ss_pred             ceeeeeeeeecccc
Confidence            56789999998864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=3.1e-29  Score=202.30  Aligned_cols=234  Identities=15%  Similarity=0.129  Sum_probs=169.1

Q ss_pred             CCceeeeccCCc----CEEEEEECCCCC--cEEEEecCCCcEEEEEccCC---eeeeeeccccC----------------
Q 022910           54 DDSTHIFSGHSD----EVYSVACSPTDA--TLVATGGGDDKGFFWRINQG---DWASEIQGHKD----------------  108 (290)
Q Consensus        54 ~~~~~~~~~h~~----~v~~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~----------------  108 (290)
                      .+.+..|+...+    .+.++.|-..+.  ..+++++ ...|++|+...+   +.+.++..|..                
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  103 (356)
T 2w18_A           25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC  103 (356)
T ss_dssp             EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred             eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence            344555555544    355666655332  2555665 579999999987   66676665554                


Q ss_pred             ---------CEEEEEECCC----CCEEEEEeC--------------------CCcEEEEcC-CCCceEEEEecCCCCEEE
Q 022910          109 ---------SVSSLAFSMD----GQLLASGGL--------------------DGLVQIWDP-SSGNLKCTLEGPGGGVEW  154 (290)
Q Consensus       109 ---------~i~~~~~~~~----~~~l~~~~~--------------------dg~i~i~d~-~~~~~~~~~~~~~~~i~~  154 (290)
                               .|+.++|+|+    ++++++++.                    |+.|++|++ .+++.+..+..|...++.
T Consensus       104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~  183 (356)
T 2w18_A          104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETI  183 (356)
T ss_dssp             EEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCE
T ss_pred             eeeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceee
Confidence                     4566777778    777776553                    788888888 447777777788888888


Q ss_pred             EEEcC---CCCEEEEeeCCCeEEEEECCcccEEEeeecCC---CCeEEEEEcCCCCEE------------EEEeCCCeEE
Q 022910          155 VSWHP---RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG---SSVTCGDFTPDGKTI------------CTGSDDATLR  216 (290)
Q Consensus       155 i~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l------------~~~~~dg~i~  216 (290)
                      ++|++   ++.+|++++.|++|+|||++++++++++.+|.   ..+.+++|+|+|.++            ++|+.|++|+
T Consensus       184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk  263 (356)
T 2w18_A          184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI  263 (356)
T ss_dssp             EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred             EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence            88888   67899999999999999999999999998654   367788999999876            5678899999


Q ss_pred             EEcCCCCeeeEEEeC--CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEE-EEEEecCC
Q 022910          217 VWNPKSGENIHVIRG--HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE-CIGFSRSE  290 (290)
Q Consensus       217 i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~-~i~~s~d~  290 (290)
                      +||..+++.+..+..  ...|...+.+..+  ++.++++|+.|++|+|||+.+++++.++.+|...+. +++|||||
T Consensus       264 lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG  338 (356)
T 2w18_A          264 VINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD  338 (356)
T ss_dssp             EEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS
T ss_pred             EEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC
Confidence            999999988765521  1124444444444  478999999999999999999999999999987655 68999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=8.7e-29  Score=206.01  Aligned_cols=202  Identities=15%  Similarity=0.162  Sum_probs=163.8

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCC-------------------------
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG-------------------------  119 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------------  119 (290)
                      ..+..+++.+....++++++.+++|++||+.+++.+..+. +...|.+++|+++.                         
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~  137 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDI  137 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCE
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEec
Confidence            3577888888555555778888999999999999888887 66788988887642                         


Q ss_pred             ----------CEEEE--EeCCCcEEEEcCCCCc----------------eEEEEecCCCCEEEEEEcCCCCEEEEeeCCC
Q 022910          120 ----------QLLAS--GGLDGLVQIWDPSSGN----------------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS  171 (290)
Q Consensus       120 ----------~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg  171 (290)
                                .++++  |+.+|.|++||+.+++                .+..+.+|..+|++++|+|++++|++|+.||
T Consensus       138 ~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~  217 (355)
T 3vu4_A          138 RFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG  217 (355)
T ss_dssp             EEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             cCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence                      23444  5778999999998765                2677889999999999999999999999999


Q ss_pred             e-EEEEECCcccEEEeee-c-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee--eEEEe----------------
Q 022910          172 T-VWMWNADRAAYLNMFS-G-HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN--IHVIR----------------  230 (290)
Q Consensus       172 ~-i~i~d~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~----------------  230 (290)
                      + |++||+++++.+..+. + |...|.+++|+|++++|++++.|+.|++||++.+..  ...+.                
T Consensus       218 ~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (355)
T 3vu4_A          218 TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN  297 (355)
T ss_dssp             SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred             CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence            8 9999999999999998 5 999999999999999999999999999999976532  11111                


Q ss_pred             --CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          231 --GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       231 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                        ...........++|++++++|++++.||.+++|++..
T Consensus       298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence              0111122346789999999999999999999999764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.4e-27  Score=202.69  Aligned_cols=224  Identities=15%  Similarity=0.089  Sum_probs=176.5

Q ss_pred             eeeccCCcCEEEEEECCC-------------CCcEEEEecCC------CcEEEEEccCCeeeeeeccccCCEEEEEECCC
Q 022910           58 HIFSGHSDEVYSVACSPT-------------DATLVATGGGD------DKGFFWRINQGDWASEIQGHKDSVSSLAFSMD  118 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~-------------~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~  118 (290)
                      ..+.+|...+..+++++.             .+..++.++.+      +.|++||+.. .....+..|...+.+++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence            457778777777766541             03344444333      7999999974 456677779999999999999


Q ss_pred             CCEEEEEeCCC---cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEE-EeeCCC--eEEEEECCcccEEEeeecCCC
Q 022910          119 GQLLASGGLDG---LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDS--TVWMWNADRAAYLNMFSGHGS  192 (290)
Q Consensus       119 ~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~  192 (290)
                      +++|++++.++   .|++||+.+++.. .+..+...+.+++|+|++++|+ +++.++  .|++||+.+++. ..+..+..
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~  267 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRS  267 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSS
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCC
Confidence            99999999875   9999999998875 4566777899999999999888 555555  499999998875 56667888


Q ss_pred             CeEEEEEcCCCCEEEEEeC-CC--eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcC
Q 022910          193 SVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNIT  266 (290)
Q Consensus       193 ~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~  266 (290)
                      .+.+++|+|+|++|++++. ++  .|++||+.+++. ..+..   +...+..++|+|+|++|++++.+   +.|++||+.
T Consensus       268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~---~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~  343 (415)
T 2hqs_A          268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITW---EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  343 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCC---SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred             cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEec---CCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence            9999999999999988876 44  788889988764 33332   45678899999999999988764   589999999


Q ss_pred             CCcEEEEEccCCCcEEEEEEecCC
Q 022910          267 TGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       267 ~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +++. ..+..+. .+.+++|+|||
T Consensus       344 ~~~~-~~l~~~~-~~~~~~~spdg  365 (415)
T 2hqs_A          344 TGGV-QVLSSTF-LDETPSLAPNG  365 (415)
T ss_dssp             TCCE-EECCCSS-SCEEEEECTTS
T ss_pred             CCCE-EEecCCC-CcCCeEEcCCC
Confidence            8887 4566554 89999999986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=2.8e-27  Score=190.85  Aligned_cols=230  Identities=15%  Similarity=0.208  Sum_probs=177.2

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-Ceeeeeeccc-cCCEEEEEECCCCCEEEEEeC--C-
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGH-KDSVSSLAFSMDGQLLASGGL--D-  128 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~--d-  128 (290)
                      ......+..|...|.+++|+| ++.+|++++ ++.|++|++.+ ++.......+ ...+.+++|+|++++|++++.  + 
T Consensus        31 ~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  108 (297)
T 2ojh_A           31 TRKMRVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFG  108 (297)
T ss_dssp             TTEEEEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTS
T ss_pred             CCceeeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCC
Confidence            344556778999999999999 677777776 78999999998 7777666555 367899999999999999983  3 


Q ss_pred             -CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEE-EeeCCCeEEEEECCc-ccEEEeeecCCCCeEEEEEcCCCCE
Q 022910          129 -GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       129 -g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~  205 (290)
                       ..|.+|++.+++ ...+..+. .+..++|+|++++|+ ++..++.+++|++.. ......+..+...+.+++|+|++++
T Consensus       109 ~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  186 (297)
T 2ojh_A          109 KSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRW  186 (297)
T ss_dssp             SCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSE
T ss_pred             cceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCE
Confidence             345555555555 33444333 489999999999877 677889999998532 2334556667788999999999998


Q ss_pred             EEEEe-CCCeEEEEcCC-CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----------CcEEEEEcCCCcE--
Q 022910          206 ICTGS-DDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----------GSVHMVNITTGKV--  270 (290)
Q Consensus       206 l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~~wd~~~~~~--  270 (290)
                      |++++ .++.+++|++. .+.....+..   +...+..++|+|++++|++++.+           +.|++||+.+++.  
T Consensus       187 l~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  263 (297)
T 2ojh_A          187 IYFNSSRTGQMQIWRVRVDGSSVERITD---SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET  263 (297)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCEEECCC---CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE
T ss_pred             EEEEecCCCCccEEEECCCCCCcEEEec---CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee
Confidence            88766 58899999876 4445555554   55678999999999999888765           5699999988765  


Q ss_pred             EEEEccCCCcEEEEEEecCC
Q 022910          271 VSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       271 ~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +..+.+|...|.+++|+|+|
T Consensus       264 ~~~~~~~~~~~~~~~~spdg  283 (297)
T 2ojh_A          264 LFDLFGGQGTMNSPNWSPDG  283 (297)
T ss_dssp             EEEEEESTTTSCSCCBCTTS
T ss_pred             eeccCCCCcccccceECCCC
Confidence            45555788899999999986

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=1.2e-24  Score=180.24  Aligned_cols=229  Identities=10%  Similarity=0.088  Sum_probs=185.7

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCC---------EEEEEECCCCCEEEEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS---------VSSLAFSMDGQLLASG  125 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~  125 (290)
                      +.+..+.. ...+.+++|+|+++.+++++..++.|.+||..+++.+..+..+...         +.+++|+|++++++++
T Consensus        80 ~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  158 (353)
T 3vgz_A           80 EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYIS  158 (353)
T ss_dssp             CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEE
T ss_pred             eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEE
Confidence            33444443 3457789999955557777787899999999999888777654322         7899999999987777


Q ss_pred             e--CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec----CCCCeEEEEE
Q 022910          126 G--LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG----HGSSVTCGDF  199 (290)
Q Consensus       126 ~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~  199 (290)
                      +  .++.|.+||+.+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+++.+..+..    +...+..++|
T Consensus       159 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (353)
T 3vgz_A          159 GIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL  238 (353)
T ss_dssp             EESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred             ecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence            6  478899999999998888875566688999999999999999999999999999988877664    4556888999


Q ss_pred             cCCCCEEEEEeC-CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEEEccC
Q 022910          200 TPDGKTICTGSD-DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       200 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~  277 (290)
                      +|+++++++++. ++.|.+||+.+++.+..+...   .  ...++|+|+++++++++ .++.|.+||+.+++.+..+...
T Consensus       239 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~  313 (353)
T 3vgz_A          239 DTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP---E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP  313 (353)
T ss_dssp             ETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS---S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC---C--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC
Confidence            999998776665 599999999999988777742   1  25689999999666555 6899999999999999888764


Q ss_pred             CCcEEEEEEecCC
Q 022910          278 TDSIECIGFSRSE  290 (290)
Q Consensus       278 ~~~v~~i~~s~d~  290 (290)
                       ..+.+++|+|+|
T Consensus       314 -~~~~~~~~s~dg  325 (353)
T 3vgz_A          314 -THPNSLALSADG  325 (353)
T ss_dssp             -SEEEEEEECTTS
T ss_pred             -CCCCeEEEcCCC
Confidence             578999999986

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.4e-24  Score=189.82  Aligned_cols=232  Identities=13%  Similarity=0.079  Sum_probs=184.8

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEc--cCCeeeeeeccccCCEEEEEECC----CCCEEEEEeC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI--NQGDWASEIQGHKDSVSSLAFSM----DGQLLASGGL  127 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~  127 (290)
                      .+.+..+..+.. +.+++|+| ++++|++++.++.|++||+  .+++.+..+. +...+..++|+|    +++++++++.
T Consensus       169 ~~~~~~i~~g~~-~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          169 KKIVKVIDTGYA-VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             CCEEEEEECSTT-EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             ceEEEEEecCcc-cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEc
Confidence            455666663333 89999999 7788888889999999999  8888888887 455679999999    9999999874


Q ss_pred             -CCcEEEEcCCCCceEEEEecC-----------CCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEE--eeecCCC
Q 022910          128 -DGLVQIWDPSSGNLKCTLEGP-----------GGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN--MFSGHGS  192 (290)
Q Consensus       128 -dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~  192 (290)
                       +++|.+||..+++++..+..+           ...+..+.++|++. ++++...++.|.+||+.+.+.+.  .+. +..
T Consensus       246 ~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~  324 (543)
T 1nir_A          246 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAP  324 (543)
T ss_dssp             ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCS
T ss_pred             cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCc
Confidence             899999999999998887642           23688999999766 55566778999999998765433  333 566


Q ss_pred             CeEEEEEcCCCCEEEEEe-CCCeEEEEcCCCCeeeEEEeCCC-CcccCeEEEEEcCC-CCEEEEEe-CCCcEEEEEcCC-
Q 022910          193 SVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLTISAD-STLALSGS-KDGSVHMVNITT-  267 (290)
Q Consensus       193 ~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~~wd~~~-  267 (290)
                      .+..+.|+|++++|++++ .+++|.+||+.+++++..+.... .|......+ ++|+ +.+++++. .+++|.+|++.+ 
T Consensus       325 ~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~  403 (543)
T 1nir_A          325 FLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPK  403 (543)
T ss_dssp             SCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             CccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCC
Confidence            788899999999877654 58899999999999888876422 133333333 4676 66677765 589999999998 


Q ss_pred             ------CcEEEEEccCCCcEEEEEEecCC
Q 022910          268 ------GKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       268 ------~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                            +++++++..|.+.+..|+|||+|
T Consensus       404 ~~~~~~~~~v~~l~~~g~~~~~v~~~pdg  432 (543)
T 1nir_A          404 NHPQYAWKKVAELQGQGGGSLFIKTHPKS  432 (543)
T ss_dssp             TCTTTBTSEEEEEECSCSCCCCEECCTTC
T ss_pred             CCchhcCeEEEEEEcCCCCceEEEcCCCC
Confidence                  89999999999999999999986

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=1.7e-26  Score=196.93  Aligned_cols=202  Identities=19%  Similarity=0.229  Sum_probs=157.9

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe----------eeee-----eccccCCEEEEEECCCCCEEE----E
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----------WASE-----IQGHKDSVSSLAFSMDGQLLA----S  124 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~-----~~~~~~~i~~~~~~~~~~~l~----~  124 (290)
                      ...++.+++++ .+.++++++.++ +++|+.....          ....     ...+...|.+++|+|++++|+    +
T Consensus        36 ~~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            34678999999 666777888777 8898764211          0100     112556799999999999999    7


Q ss_pred             EeCCCcEEEEcCCCC--------ce---EEEEecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeeecCCC
Q 022910          125 GGLDGLVQIWDPSSG--------NL---KCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS  192 (290)
Q Consensus       125 ~~~dg~i~i~d~~~~--------~~---~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  192 (290)
                      ++.|+.|+|||+.++        +.   +..+.+|...|.+++|+|+ +.+|++++.||+|++||++++..+....+|..
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~  193 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV  193 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence            888999999998654        22   3455668889999999998 78999999999999999999877767777889


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC----cccCeEEEEEcCCCCEEEEE-eCCC------cEE
Q 022910          193 SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY----HTEGLTCLTISADSTLALSG-SKDG------SVH  261 (290)
Q Consensus       193 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~~dg------~i~  261 (290)
                      .|.+++|+|+|++|++|+.||.|++||++ ++....+..+..    |...+.+++|++++.++++. +.+|      .++
T Consensus       194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~  272 (434)
T 2oit_A          194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV  272 (434)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence            99999999999999999999999999998 555555554321    23479999999988877553 3443      389


Q ss_pred             EEEcCCC
Q 022910          262 MVNITTG  268 (290)
Q Consensus       262 ~wd~~~~  268 (290)
                      +|++++.
T Consensus       273 i~~l~~~  279 (434)
T 2oit_A          273 MALLPKK  279 (434)
T ss_dssp             EEECCCT
T ss_pred             EEEeccC
Confidence            9999864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=4.6e-24  Score=176.76  Aligned_cols=225  Identities=12%  Similarity=0.121  Sum_probs=180.7

Q ss_pred             CCcCEEEEEECCCCCcEEEEecC------CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEc
Q 022910           63 HSDEVYSVACSPTDATLVATGGG------DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWD  135 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d  135 (290)
                      ....+..++|+|+++.++++...      ++.|.+||..+++.+..+.. ...+..++|+|++++++++ ..++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            44578899999944444444432      56899999999988887763 3457889999999965554 5579999999


Q ss_pred             CCCCceEEEEecCCCC---------EEEEEEcCCCCEEEEee--CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCC
Q 022910          136 PSSGNLKCTLEGPGGG---------VEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~---------i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  204 (290)
                      +.+++.+..+..+...         +.+++|+|+++++++++  .++.|.+||+.+++.+..+..+...+.+++|+|+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence            9999988888764432         78899999999887776  478999999999998888875666788999999999


Q ss_pred             EEEEEeCCCeEEEEcCCCCeeeEEEeCCC-CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEEccCCCcEE
Q 022910          205 TICTGSDDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVVSSLVSHTDSIE  282 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~  282 (290)
                      +|++++.++.|.+||+.+++....+.... .+...+..++|+|++++|++++. ++.|.+||+.+++.+..+....  ..
T Consensus       198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~  275 (353)
T 3vgz_A          198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SL  275 (353)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CC
T ss_pred             EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cc
Confidence            99999999999999999998887776422 13556888999999997777665 4899999999999998887643  26


Q ss_pred             EEEEecCC
Q 022910          283 CIGFSRSE  290 (290)
Q Consensus       283 ~i~~s~d~  290 (290)
                      +++|+|+|
T Consensus       276 ~~~~s~dg  283 (353)
T 3vgz_A          276 AVLFNPAR  283 (353)
T ss_dssp             CEEEETTT
T ss_pred             eEEECCCC
Confidence            78999986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=2e-24  Score=177.55  Aligned_cols=231  Identities=15%  Similarity=0.117  Sum_probs=172.7

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee-eeeeccccCCEEEEEECCCCCEEEEEeCCC---
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQGHKDSVSSLAFSMDGQLLASGGLDG---  129 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---  129 (290)
                      .+.+..+..+...+ +++|+|++..+++++..++.|.+||+.+++. ...+..+..+..+++|+|++++++++..++   
T Consensus        30 ~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  108 (331)
T 3u4y_A           30 LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPF  108 (331)
T ss_dssp             CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSC
T ss_pred             cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcc
Confidence            34455556666667 9999995555666666689999999999887 666776666666699999999999655553   


Q ss_pred             cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe-eCCCe-EEEEECCcccEE----EeeecCCCCeEEEEEcCCC
Q 022910          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDST-VWMWNADRAAYL----NMFSGHGSSVTCGDFTPDG  203 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~-i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~  203 (290)
                      .|.+||+.+++.+..+..+ ....+++|+|++++++++ ..++. |.+|++.....+    .........+..++|+|++
T Consensus       109 ~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg  187 (331)
T 3u4y_A          109 NMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG  187 (331)
T ss_dssp             EEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS
T ss_pred             cEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCC
Confidence            8999999999988877654 457999999999855554 55578 999998754322    1222345668999999999


Q ss_pred             CEEEEE-eCCCeEEEEcCCCCee---eEEEeCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcE--EEEEcc
Q 022910          204 KTICTG-SDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKV--VSSLVS  276 (290)
Q Consensus       204 ~~l~~~-~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~--~~~~~~  276 (290)
                      ++++++ ..++.|++||+.+++.   +..+..    ...+..++|+|+|++|++++ .++.|.+||+.+++.  +..+..
T Consensus       188 ~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~  263 (331)
T 3u4y_A          188 NFAFVANLIGNSIGILETQNPENITLLNAVGT----NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH  263 (331)
T ss_dssp             SEEEEEETTTTEEEEEECSSTTSCEEEEEEEC----SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred             CEEEEEeCCCCeEEEEECCCCcccceeeeccC----CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccc
Confidence            976554 4689999999998887   666653    45678899999999777665 477899999999887  555443


Q ss_pred             C----CCc---EEEEEEecCC
Q 022910          277 H----TDS---IECIGFSRSE  290 (290)
Q Consensus       277 ~----~~~---v~~i~~s~d~  290 (290)
                      +    ..+   ...++|+|||
T Consensus       264 ~~~~~~~~~~~~~~~~~spdg  284 (331)
T 3u4y_A          264 GLLIDPRPLFGANQMALNKTE  284 (331)
T ss_dssp             CCCCCCGGGTTCCCEEECTTS
T ss_pred             ccccCCCCcccccceEECCCC
Confidence            2    222   2458999986

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=2e-25  Score=202.68  Aligned_cols=222  Identities=14%  Similarity=0.120  Sum_probs=176.6

Q ss_pred             CcCEEEEEECCCCCcEEEEecC-CC-----cEEEEEccCCeeeeeeccccC------------------------CEEEE
Q 022910           64 SDEVYSVACSPTDATLVATGGG-DD-----KGFFWRINQGDWASEIQGHKD------------------------SVSSL  113 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~------------------------~i~~~  113 (290)
                      ...|.+++|+| ++.+|++++. ++     .|++|++.+++....+..+..                        .+.++
T Consensus        36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            45799999999 7777888777 88     899999999887666654433                        27899


Q ss_pred             EECCCCCEEEEEeCCCcEEEEcCCCCc--eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCC
Q 022910          114 AFSMDGQLLASGGLDGLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG  191 (290)
Q Consensus       114 ~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  191 (290)
                      +|+|+|++|++++. +.|++|++.++.  ....+..+...+..++|+|+|++|++++. +.|++||+.+++.......+.
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCc
Confidence            99999999999886 999999999883  34456667778999999999999999885 699999999887665544433


Q ss_pred             CC----------------eEEEEEcCCCCEEEEEeCCC---------------------------------eEEEEcCCC
Q 022910          192 SS----------------VTCGDFTPDGKTICTGSDDA---------------------------------TLRVWNPKS  222 (290)
Q Consensus       192 ~~----------------i~~~~~~~~~~~l~~~~~dg---------------------------------~i~i~d~~~  222 (290)
                      ..                +..++|+|+|++|++++.|+                                 .|++||+.+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence            32                47799999999999887765                                 899999988


Q ss_pred             -CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-----CCcEEEEEcCCCcEEEEEccCCC----cEEEEEEecCC
Q 022910          223 -GENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-----DGSVHMVNITTGKVVSSLVSHTD----SIECIGFSRSE  290 (290)
Q Consensus       223 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~----~v~~i~~s~d~  290 (290)
                       ++....... ..+...+..++| |+|++|++++.     +..|++||+.+++....+..+..    .+.+++|+|||
T Consensus       273 ~~~~~~~~~~-~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg  348 (741)
T 2ecf_A          273 QAQTQWIDLG-KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG  348 (741)
T ss_dssp             TCCCEEECCC-SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred             CCceEEecCC-CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence             775443322 125678999999 99999987754     56899999999998877766543    45789999986

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=1.7e-24  Score=178.45  Aligned_cols=226  Identities=15%  Similarity=0.204  Sum_probs=163.4

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCC-CcEEEEEcc--CCe--eeeeeccccCCEEEEEECCCCCEEEEEeC-CCcEEEE
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGD-DKGFFWRIN--QGD--WASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQIW  134 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~  134 (290)
                      ..|...+.+++|+| ++.+|++++.+ +.|++|++.  +++  .+..+..+. .+..++|+|++++|++++. ++.|.+|
T Consensus        34 ~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~  111 (343)
T 1ri6_A           34 VDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVT  111 (343)
T ss_dssp             EECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence            35777899999999 55655555554 999999997  444  334444333 7889999999998877665 8899999


Q ss_pred             cCC---CCceEEEEecCCCCEEEEEEcCCCCEEEEee-CCCeEEEEECCc-ccEEE----eeec-CCCCeEEEEEcCCCC
Q 022910          135 DPS---SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADR-AAYLN----MFSG-HGSSVTCGDFTPDGK  204 (290)
Q Consensus       135 d~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~~-~~~~i~~~~~~~~~~  204 (290)
                      ++.   ..+....+..+ ..+.+++|+|+++++++++ .++.|++|++.+ ++...    .+.. ....+..++|+|+++
T Consensus       112 d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~  190 (343)
T 1ri6_A          112 RLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  190 (343)
T ss_dssp             EEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             ECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC
Confidence            994   33444444433 4588999999999888877 889999999987 54432    2222 345788999999999


Q ss_pred             EEEEEe-CCCeEEEEcCCC--Cee--eEEEeCCCC---cccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcC----CCcEE
Q 022910          205 TICTGS-DDATLRVWNPKS--GEN--IHVIRGHPY---HTEGLTCLTISADSTLALSG-SKDGSVHMVNIT----TGKVV  271 (290)
Q Consensus       205 ~l~~~~-~dg~i~i~d~~~--~~~--~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~----~~~~~  271 (290)
                      +|++++ .++.|++|++..  +..  ...+.....   ....+..++|+|++++|+++ ..++.|++|++.    +.+.+
T Consensus       191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~  270 (343)
T 1ri6_A          191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  270 (343)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence            776554 789999999953  332  223332111   13457789999999887754 478999999998    34556


Q ss_pred             EEEccCCCcEEEEEEecCC
Q 022910          272 SSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       272 ~~~~~~~~~v~~i~~s~d~  290 (290)
                      ..+..+.. +.+++|+|+|
T Consensus       271 ~~~~~~~~-~~~~~~s~dg  288 (343)
T 1ri6_A          271 GFQPTETQ-PRGFNVDHSG  288 (343)
T ss_dssp             EEEECSSS-CCCEEECTTS
T ss_pred             eeecCCCc-cceEEECCCC
Confidence            66665544 8999999986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=9.4e-24  Score=173.58  Aligned_cols=217  Identities=9%  Similarity=0.040  Sum_probs=168.4

Q ss_pred             EECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC-CCcEEEEcCCCCce-EEEEecC
Q 022910           71 ACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQIWDPSSGNL-KCTLEGP  148 (290)
Q Consensus        71 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~-~~~~~~~  148 (290)
                      .|.+....++++++.++.|++||+.+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            4566567788899999999999999999888877666667 9999999997776665 88999999999988 7777766


Q ss_pred             CCCEEEEEEcCCCCEEEEeeCCC---eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE-EeCCCe-EEEEcCCCC
Q 022910          149 GGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT-GSDDAT-LRVWNPKSG  223 (290)
Q Consensus       149 ~~~i~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~-i~i~d~~~~  223 (290)
                      ..+..+++|+|++++++++..++   .|++||+.+++.+..+.. ...+.+++|+|++++|++ ...++. |.+|++...
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            66665599999999999666553   899999999988887764 455689999999986554 455678 999998754


Q ss_pred             eeeEEEe-CCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcE---EEEEccCCCcEEEEEEecCC
Q 022910          224 ENIHVIR-GHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKV---VSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       224 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~---~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ..+.... ........+..++|+|+|++|+++ ..++.|++||+.+++.   +..+.. ...+.+++|+|||
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg  232 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDG  232 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTS
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCC
Confidence            4331110 000134568999999999966555 4688999999999988   777775 4678899999986

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=1.3e-23  Score=172.67  Aligned_cols=203  Identities=12%  Similarity=0.098  Sum_probs=165.2

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc-c----cCCEEEEEECCCCCEEEEEe------------CC
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-H----KDSVSSLAFSMDGQLLASGG------------LD  128 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~----~~~i~~~~~~~~~~~l~~~~------------~d  128 (290)
                      .+.+++|+|++..+++++..++.|.+||+.+++.+..+.. +    ...+.+++|+|++++|++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            4788999995556777788889999999999887776652 1    22567899999999988886            57


Q ss_pred             CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCC-----------------
Q 022910          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-----------------  191 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------  191 (290)
                      +.|.+||+.+++.+..+.. ...+.+++|+|++++|+++  ++.|++||+.+++.+..+..+.                 
T Consensus       115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  191 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence            9999999999888877765 4457889999999988887  5889999998876654433211                 


Q ss_pred             -------------------------------------------------CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910          192 -------------------------------------------------SSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (290)
Q Consensus       192 -------------------------------------------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  222 (290)
                                                                       ..+.+++|+|++++++++  ++.|++||+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~  269 (337)
T 1pby_B          192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred             ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence                                                             234568999999999888  69999999999


Q ss_pred             CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910          223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  277 (290)
                      ++.+..+..    ...+.+++|+|++++|++++.++.|++||+.+++.+..+..+
T Consensus       270 ~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          270 NASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CcCcceecC----CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            988777763    345789999999999999999999999999999999988754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=2.1e-23  Score=182.42  Aligned_cols=199  Identities=11%  Similarity=0.032  Sum_probs=167.0

Q ss_pred             EECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC--CCCceEEEEecC
Q 022910           71 ACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP--SSGNLKCTLEGP  148 (290)
Q Consensus        71 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~  148 (290)
                      +|+| ++.++++++.+++|.+||..+++.+..+..+.. +..++|+|++++|++++.++.|++||+  .+++.+..+.. 
T Consensus       144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-  220 (543)
T 1nir_A          144 DLDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-  220 (543)
T ss_dssp             CCCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-
T ss_pred             ccCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-
Confidence            3788 678899999999999999999999988874333 899999999999999999999999999  88888888874 


Q ss_pred             CCCEEEEEEcC----CCCEEEEeeC-CCeEEEEECCcccEEEeeecC-----------CCCeEEEEEcCCCCE-EEEEeC
Q 022910          149 GGGVEWVSWHP----RGHIVLAGSE-DSTVWMWNADRAAYLNMFSGH-----------GSSVTCGDFTPDGKT-ICTGSD  211 (290)
Q Consensus       149 ~~~i~~i~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~-l~~~~~  211 (290)
                      ...+..++|+|    +++++++++. +++|.+||..+++++..+..+           ...+..+.++|++.. +++...
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence            45689999999    9999999885 899999999999988887642           236889999997655 456677


Q ss_pred             CCeEEEEcCCCCeeeE--EEeCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEEEcc
Q 022910          212 DATLRVWNPKSGENIH--VIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      ++.|.+||+.+.+.+.  .+.    +...+..+.|+|+|++|++++ .+++|.+||+.+++++..+..
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~----~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~  364 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIG----AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  364 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEE----CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEEecCCCcceeEEec----cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc
Confidence            8999999998876544  333    345677899999999876654 588999999999999998874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=3.7e-25  Score=200.40  Aligned_cols=221  Identities=13%  Similarity=0.146  Sum_probs=171.4

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccC---CEEEEEECCCCCEEEEEeCC---------CcEEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD---SVSSLAFSMDGQLLASGGLD---------GLVQI  133 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~d---------g~i~i  133 (290)
                      .+.+++|+| ++.++++ +.||+|++|++.+++....+..|..   .|.+++|+|+|++|++++.+         +.|++
T Consensus        18 ~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           18 HDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             cccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            467889999 5566665 6899999999999988777776654   48999999999999999764         78889


Q ss_pred             EcCCCCceEEEEec---CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCe----------------
Q 022910          134 WDPSSGNLKCTLEG---PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV----------------  194 (290)
Q Consensus       134 ~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i----------------  194 (290)
                      ||+.+++. ..+..   +...+..++|+|+|++|++++. +.|++|++.+++..+....+...+                
T Consensus        96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            99999876 33332   3334888999999999999887 899999999887666555433333                


Q ss_pred             --EEEEEcCCCCEEEEEeCCC----------------------------------eEEEEcCCCCeeeEEEeCCC---Cc
Q 022910          195 --TCGDFTPDGKTICTGSDDA----------------------------------TLRVWNPKSGENIHVIRGHP---YH  235 (290)
Q Consensus       195 --~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~~---~~  235 (290)
                        .+++|+|+|++|++++.++                                  .|++||+.+++....+....   .+
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~  253 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence              7899999999999887543                                  79999999887655555321   12


Q ss_pred             ccCeEEEEEcCCCCEEEEEeC----CCcEEEEEcCCCcEEEEEcc-CCCcE----EEEEEecCC
Q 022910          236 TEGLTCLTISADSTLALSGSK----DGSVHMVNITTGKVVSSLVS-HTDSI----ECIGFSRSE  290 (290)
Q Consensus       236 ~~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~-~~~~v----~~i~~s~d~  290 (290)
                      ...+..++|+|||++|++...    +..|++||+.++++...+.. +.+.+    ..++|||||
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg  317 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDG  317 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTS
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCC
Confidence            567899999999998877643    35799999999988776654 33444    388999986

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=5e-24  Score=192.59  Aligned_cols=221  Identities=13%  Similarity=0.119  Sum_probs=172.5

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC-----C
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-----G  139 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~  139 (290)
                      ..|.+++|+|+ +.++++.  ++.|++||+.+++.... ..+...+.+++|+|+|++|+++ .++.|++|++.+     +
T Consensus        82 ~~v~~~~~spd-~~~~~~~--~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g  156 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT--QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS  156 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE--TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred             cCceeEEECCC-CeEEEEE--CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence            57999999995 6555553  49999999998876543 4466778899999999999985 579999999998     7


Q ss_pred             ceEEEEecCCCC--------------EEEEEEcCCCCEEEEee---------------------------------CCCe
Q 022910          140 NLKCTLEGPGGG--------------VEWVSWHPRGHIVLAGS---------------------------------EDST  172 (290)
Q Consensus       140 ~~~~~~~~~~~~--------------i~~i~~~~~~~~l~~~~---------------------------------~dg~  172 (290)
                      +.......+...              +.++.|+|+|++|++++                                 .+..
T Consensus       157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence            766544433332              47899999999999987                                 4467


Q ss_pred             EEEEECCcccEEEeee--cCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEcCCCCeeeEEEeCC--CCcccCeEEEE
Q 022910          173 VWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDA-----TLRVWNPKSGENIHVIRGH--PYHTEGLTCLT  243 (290)
Q Consensus       173 i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~  243 (290)
                      |++||+.+++......  .+...+..++|+|+|++|++++.++     .|++||+.+++....+...  ......+..++
T Consensus       237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  316 (706)
T 2z3z_A          237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT  316 (706)
T ss_dssp             EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence            9999999887655442  4567799999999999999887765     8999999998433333211  10112246789


Q ss_pred             EcC--CCCEEEEEeCCCcEEEEEcC-CCcEEEEEccCCCcEEE-EEEecCC
Q 022910          244 ISA--DSTLALSGSKDGSVHMVNIT-TGKVVSSLVSHTDSIEC-IGFSRSE  290 (290)
Q Consensus       244 ~~~--~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~-i~~s~d~  290 (290)
                      |+|  +|++|++++.+|.+++|.+. +++.+..+..+...+.. ++|+|+|
T Consensus       317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg  367 (706)
T 2z3z_A          317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKG  367 (706)
T ss_dssp             ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTS
T ss_pred             eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCC
Confidence            999  99999999999999999886 67888888888888887 7999986

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=3.4e-24  Score=194.66  Aligned_cols=220  Identities=13%  Similarity=0.102  Sum_probs=172.2

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      .|.+++|+| ++++|++++. +.|++|++.++.  ....+..|...+..++|+|+|++|++++ ++.|++|++.+++...
T Consensus       110 ~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          110 GIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             ESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             CcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence            488999999 6677777665 999999999873  4455666888899999999999999987 5689999999887665


Q ss_pred             EEecCCCC----------------EEEEEEcCCCCEEEEeeCCC---------------------------------eEE
Q 022910          144 TLEGPGGG----------------VEWVSWHPRGHIVLAGSEDS---------------------------------TVW  174 (290)
Q Consensus       144 ~~~~~~~~----------------i~~i~~~~~~~~l~~~~~dg---------------------------------~i~  174 (290)
                      ....+...                +..++|+|+|++|++++.++                                 .|+
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            54433332                47799999999999987765                                 899


Q ss_pred             EEECCc-ccEEEeee--cCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEcCCCCeeeEEEeCCCC-cccCeEEEEEc
Q 022910          175 MWNADR-AAYLNMFS--GHGSSVTCGDFTPDGKTICTGSD-----DATLRVWNPKSGENIHVIRGHPY-HTEGLTCLTIS  245 (290)
Q Consensus       175 i~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~~  245 (290)
                      +||+.+ ++......  .+...+..++| |+|++|++++.     +..|++||+.+++....+..... ....+..++|+
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            999988 77554433  36678999999 99999987654     56899999999887666654210 00134678999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcC-CCcEEEEEccCCCcEEEE-EEecCC
Q 022910          246 ADSTLALSGSKDGSVHMVNIT-TGKVVSSLVSHTDSIECI-GFSRSE  290 (290)
Q Consensus       246 ~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~i-~~s~d~  290 (290)
                      |+|+++++++.+|.+++|.+. .++ +..+..|...|..+ .|+|+|
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg  391 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKA  391 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTT
T ss_pred             CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCC
Confidence            999999999999988888765 455 78888888889887 599986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=8.7e-24  Score=170.32  Aligned_cols=201  Identities=14%  Similarity=0.136  Sum_probs=158.3

Q ss_pred             EecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC-CceEEEEecC-CCCEEEEEEcC
Q 022910           82 TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGP-GGGVEWVSWHP  159 (290)
Q Consensus        82 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~-~~~i~~i~~~~  159 (290)
                      .++.++.|++|++.+++... +..|...|.+++|+|++++|++++ ++.|++|++.+ ++.......+ ...+.+++|+|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            45678999999999887664 445889999999999999999987 78999999999 8877666555 36788999999


Q ss_pred             CCCEEEEeeC--C--CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEcC--CCCeeeEEEeCC
Q 022910          160 RGHIVLAGSE--D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDATLRVWNP--KSGENIHVIRGH  232 (290)
Q Consensus       160 ~~~~l~~~~~--d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~--~~~~~~~~~~~~  232 (290)
                      ++++|++++.  +  ..|..|++.+++ ...+..+ ..+..++|+|++++|+ ++..++.+++|++  .++.. ..+.. 
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~-  170 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTH-  170 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECCC-
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEccc-
Confidence            9999999983  3  455555665554 3344433 3588999999999887 7778999999985  33333 33333 


Q ss_pred             CCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC-CCcEEEEEccCCCcEEEEEEecCC
Q 022910          233 PYHTEGLTCLTISADSTLALSGS-KDGSVHMVNIT-TGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~-~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                        +...+.+++|+|++++|++++ .++.+++|++. .+..+..+..|...+.+++|+|+|
T Consensus       171 --~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  228 (297)
T 2ojh_A          171 --GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG  228 (297)
T ss_dssp             --SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred             --CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence              567899999999999887766 58899999986 566778888888899999999986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=6.1e-23  Score=169.98  Aligned_cols=229  Identities=14%  Similarity=0.225  Sum_probs=163.5

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEec--CCCcEEEEEccCCe--eeeeeccccCCEEEEEECCCCCEEEEEe-CCCcEEEEc
Q 022910           61 SGHSDEVYSVACSPTDATLVATGG--GDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWD  135 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d  135 (290)
                      ..+...+..++|+| ++++++++.  .++.|++|++.+++  .+..+..+...+..++|+|++++|++++ .++.|.+|+
T Consensus        36 ~~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            44556778899999 566555543  26899999998765  3444455677889999999999888887 679999999


Q ss_pred             CCC-Cc--eEEEEecC---------CCCEEEEEEcCCCCEEEEeeCCCeEEEEECC-cccEE--Eeeec-CCCCeEEEEE
Q 022910          136 PSS-GN--LKCTLEGP---------GGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYL--NMFSG-HGSSVTCGDF  199 (290)
Q Consensus       136 ~~~-~~--~~~~~~~~---------~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~--~~~~~-~~~~i~~~~~  199 (290)
                      +.. +.  .+..+...         ...+.+++|+|+++++++...++.|++|++. +++..  ..+.. ....+..++|
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            963 32  22333221         1248899999999966666678899999998 44432  22222 3346788999


Q ss_pred             cCCCCEEEE-EeCCCeEEEEcCCC--Cee--eEEEeCCCC---cccCeEEEEEcCCCCEEE-EEeCCCcEEEEEcC---C
Q 022910          200 TPDGKTICT-GSDDATLRVWNPKS--GEN--IHVIRGHPY---HTEGLTCLTISADSTLAL-SGSKDGSVHMVNIT---T  267 (290)
Q Consensus       200 ~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~~---~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~---~  267 (290)
                      +|+|++|++ +..++.|++|++..  ++.  ...+.....   ....+..++|+|+|++|+ +...++.|.+|++.   .
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH  274 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence            999997665 56688999999874  443  223332211   114588999999999774 55568999999997   3


Q ss_pred             CcEEEEEccCCCcEEEEEEecCC
Q 022910          268 GKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       268 ~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .+.+..+..+...+.+++|+|||
T Consensus       275 ~~~~~~~~~~~~~~~~~~~spdg  297 (347)
T 3hfq_A          275 LTLIQQISTEGDFPRDFDLDPTE  297 (347)
T ss_dssp             EEEEEEEECSSSCCCEEEECTTS
T ss_pred             EEEeEEEecCCCCcCeEEECCCC
Confidence            35667777777788999999986

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=3.7e-24  Score=182.49  Aligned_cols=191  Identities=14%  Similarity=0.108  Sum_probs=150.1

Q ss_pred             CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC----------ceE------EEEecCCC
Q 022910           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG----------NLK------CTLEGPGG  150 (290)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~------~~~~~~~~  150 (290)
                      +.+++|+....     +  +...+..+++++++.++++++.++ +++|+....          ..+      ..+ .+..
T Consensus        23 ~~vri~~~~~~-----~--~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   93 (434)
T 2oit_A           23 KKVRIFDSPEE-----L--PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKF   93 (434)
T ss_dssp             CEEECSCCCSS-----C--CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSS
T ss_pred             eeEEecCCccc-----c--CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCC
Confidence            45777654211     1  234578899999999999999888 888764210          011      111 2456


Q ss_pred             CEEEEEEcCCCCEEE----EeeCCCeEEEEECCcc--------c---EEEeeecCCCCeEEEEEcCC-CCEEEEEeCCCe
Q 022910          151 GVEWVSWHPRGHIVL----AGSEDSTVWMWNADRA--------A---YLNMFSGHGSSVTCGDFTPD-GKTICTGSDDAT  214 (290)
Q Consensus       151 ~i~~i~~~~~~~~l~----~~~~dg~i~i~d~~~~--------~---~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~  214 (290)
                      .|.+++|+|++++|+    +|+.|+.|++||+++.        +   .+..+.+|...|.+++|+|+ +.+|++++.||.
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence            799999999999999    7889999999998765        2   24556678999999999997 899999999999


Q ss_pred             EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC-------CcEEEEEEe
Q 022910          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT-------DSIECIGFS  287 (290)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-------~~v~~i~~s  287 (290)
                      |++||++++........   |...|++++|+|+|++|++|+.||.|++||++ ++....+..|.       ..|.+++|+
T Consensus       174 v~iwD~~~~~~~~~~~~---~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~  249 (434)
T 2oit_A          174 IAVLQVTETVKVCATLP---STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI  249 (434)
T ss_dssp             EEEEEESSSEEEEEEEC---GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred             EEEEEcCCCcceeeccC---CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence            99999999866555544   77899999999999999999999999999998 67777665543       389999999


Q ss_pred             cCC
Q 022910          288 RSE  290 (290)
Q Consensus       288 ~d~  290 (290)
                      +++
T Consensus       250 ~~~  252 (434)
T 2oit_A          250 GTY  252 (434)
T ss_dssp             ETT
T ss_pred             cCc
Confidence            864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=2.4e-22  Score=165.54  Aligned_cols=225  Identities=11%  Similarity=0.123  Sum_probs=158.8

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc---CCeeeeeeccccCCEEEEEECCCCCEEEEEe-CCCcEEE
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN---QGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQI  133 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i  133 (290)
                      ..+..+. .+.+++|+|++..+++++..++.|.+|++.   ..+....+..+ ..+.+++|+|++++|++++ .++.|++
T Consensus        78 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~  155 (343)
T 1ri6_A           78 AESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICL  155 (343)
T ss_dssp             EEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEE
T ss_pred             cccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEE
Confidence            3444444 788999999544455566668999999994   44444555433 4588999999999888877 8899999


Q ss_pred             EcCCC-CceEE----EEec-CCCCEEEEEEcCCCCEEEEee-CCCeEEEEECCc--ccE--EEeee---cC---CCCeEE
Q 022910          134 WDPSS-GNLKC----TLEG-PGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADR--AAY--LNMFS---GH---GSSVTC  196 (290)
Q Consensus       134 ~d~~~-~~~~~----~~~~-~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~--~~~~~---~~---~~~i~~  196 (290)
                      |++.+ ++...    .+.. ....+..++|+|+++++++++ .++.|.+|++..  ++.  ...+.   ..   ...+..
T Consensus       156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  235 (343)
T 1ri6_A          156 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  235 (343)
T ss_dssp             EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             EEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence            99987 65432    2232 344788999999999776554 789999999954  322  22222   11   235678


Q ss_pred             EEEcCCCCEEEEE-eCCCeEEEEcCC--CC--eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEE--cCCC
Q 022910          197 GDFTPDGKTICTG-SDDATLRVWNPK--SG--ENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVN--ITTG  268 (290)
Q Consensus       197 ~~~~~~~~~l~~~-~~dg~i~i~d~~--~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd--~~~~  268 (290)
                      ++|+|++++|+++ ..++.|++|++.  ++  +.+..+..   + ..+..++|+|++++|++++ .++.|.+|+  ..++
T Consensus       236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g  311 (343)
T 1ri6_A          236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT---E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG  311 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC---S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred             eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC---C-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCc
Confidence            9999999888754 478999999998  22  33334442   2 3388899999999888887 579999995  4466


Q ss_pred             c--EEEEEccCCCcEEEEEEecC
Q 022910          269 K--VVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       269 ~--~~~~~~~~~~~v~~i~~s~d  289 (290)
                      +  .+..+.. .....+++|.|+
T Consensus       312 ~~~~~~~~~~-g~~p~~i~~~~~  333 (343)
T 1ri6_A          312 LLHEKGRYAV-GQGPMWVVVNAH  333 (343)
T ss_dssp             EEEEEEEEEC-SSSCCEEEEEEE
T ss_pred             eeeEcccccc-CCCCeeEEEEcc
Confidence            4  4455554 356778888875

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=8.7e-24  Score=191.42  Aligned_cols=233  Identities=12%  Similarity=0.057  Sum_probs=169.4

Q ss_pred             CCceeeeccCCc---CEEEEEECCCCCcEEEEecCC---------CcEEEEEccCCeee--eeeccccCCEEEEEECCCC
Q 022910           54 DDSTHIFSGHSD---EVYSVACSPTDATLVATGGGD---------DKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMDG  119 (290)
Q Consensus        54 ~~~~~~~~~h~~---~v~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~--~~~~~~~~~i~~~~~~~~~  119 (290)
                      .+....+.+|..   .|.+++|+| ++++|++++.+         +.+++||+.+++..  .....|...+..++|+|+|
T Consensus        47 g~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG  125 (723)
T 1xfd_A           47 NTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG  125 (723)
T ss_dssp             CCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST
T ss_pred             CcEEEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCC
Confidence            345566666665   499999999 67777777653         78899999988752  2223445558899999999


Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEEecCCCCE------------------EEEEEcCCCCEEEEeeCCC----------
Q 022910          120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV------------------EWVSWHPRGHIVLAGSEDS----------  171 (290)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i------------------~~i~~~~~~~~l~~~~~dg----------  171 (290)
                      ++|++++. +.|++|++.+++.......+...+                  .+++|+|+|++|++++.++          
T Consensus       126 ~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~  204 (723)
T 1xfd_A          126 QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT  204 (723)
T ss_dssp             TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC
T ss_pred             CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeec
Confidence            99999886 799999999988776665443333                  7899999999999987543          


Q ss_pred             ------------------------eEEEEECCcccEEEeeecC------CCCeEEEEEcCCCCEEEEEeC----CCeEEE
Q 022910          172 ------------------------TVWMWNADRAAYLNMFSGH------GSSVTCGDFTPDGKTICTGSD----DATLRV  217 (290)
Q Consensus       172 ------------------------~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~----dg~i~i  217 (290)
                                              .|++||+.+++....+..+      ...+..++|+|+|++|++.+.    +..|++
T Consensus       205 ~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~  284 (723)
T 1xfd_A          205 YTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL  284 (723)
T ss_dssp             CSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred             cCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE
Confidence                                    7999999988765555543      567899999999998876643    357999


Q ss_pred             EcCCCCeeeEEEeCCCCcccCe----EEEEEcCCCCEEEE--EeCCC------cEEEEE-cCCCc--EEEEEccCCCcEE
Q 022910          218 WNPKSGENIHVIRGHPYHTEGL----TCLTISADSTLALS--GSKDG------SVHMVN-ITTGK--VVSSLVSHTDSIE  282 (290)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~--~~~dg------~i~~wd-~~~~~--~~~~~~~~~~~v~  282 (290)
                      ||+.+++....+...  +...+    ..++|+|+|+.|+.  +..++      .|++|| ..+++  +...+..+...+.
T Consensus       285 ~d~~~g~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~  362 (723)
T 1xfd_A          285 CDATTGVCTKKHEDE--SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT  362 (723)
T ss_dssp             EETTTCCEEEEEEEE--CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred             EeCCCCcceEEEEec--cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE
Confidence            999998876655431  22222    37899999997765  45566      577787 34444  1455554444555


Q ss_pred             E-EEEecCC
Q 022910          283 C-IGFSRSE  290 (290)
Q Consensus       283 ~-i~~s~d~  290 (290)
                      . ++|+|||
T Consensus       363 ~~~~~spdg  371 (723)
T 1xfd_A          363 KILAYDEKG  371 (723)
T ss_dssp             EEEEEETTT
T ss_pred             eeeEEcCCC
Confidence            5 6999986

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=2e-22  Score=165.60  Aligned_cols=207  Identities=11%  Similarity=0.070  Sum_probs=165.1

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeeccccC--CEEEEEECCCCCEEE-EEeCCCcEEEEcCCCCceEEEEecCC-----
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKD--SVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCTLEGPG-----  149 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~-----  149 (290)
                      .+|++++.++.|++||+.+++.+..+.....  .+..++|+|++++++ +++.++.|.+||+.+++.+..+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4788999999999999999988877763321  478899999998664 55567899999999999887766322     


Q ss_pred             CCEEEEEEcCCCCEEEEee------------CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 022910          150 GGVEWVSWHPRGHIVLAGS------------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV  217 (290)
Q Consensus       150 ~~i~~i~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  217 (290)
                      ..+..++|+|++++|+++.            .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++  ++.|++
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            1467899999999998886            579999999999888777764 4567889999999988887  688999


Q ss_pred             EcCCCCeeeEEEeCCC--C-------------------------------------------------------------
Q 022910          218 WNPKSGENIHVIRGHP--Y-------------------------------------------------------------  234 (290)
Q Consensus       218 ~d~~~~~~~~~~~~~~--~-------------------------------------------------------------  234 (290)
                      ||+.+++....+....  .                                                             
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  238 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence            9999887765554321  0                                                             


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +...+.+++|+|++++|+++  ++.|++||+.+++.+..+..+ ..+.+++|+|+|
T Consensus       239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg  291 (337)
T 1pby_B          239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDG  291 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTS
T ss_pred             CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCC
Confidence            01234568999999999988  789999999999998888753 567899999986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=2.4e-23  Score=195.60  Aligned_cols=224  Identities=14%  Similarity=0.137  Sum_probs=182.4

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc-----------ccCCEEEEEEC-CCCCEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-----------HKDSVSSLAFS-MDGQLL  122 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------~~~~i~~~~~~-~~~~~l  122 (290)
                      .....+..|. .+..++|+| ++..|+.+ .++.|++|++...+ +..+..           |...+.+++|+ |+|++|
T Consensus       236 ~~~~~l~~~~-~~~~~~~Sp-DG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~l  311 (1045)
T 1k32_A          236 KDLRKHTSFT-DYYPRHLNT-DGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLI  311 (1045)
T ss_dssp             CSCEECCCCC-SSCEEEEEE-SSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCE
T ss_pred             CcceEecCCC-CcceeeEcC-CCCEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEE
Confidence            3445555565 466789999 66666665 48999999995443 334443           34468999999 999999


Q ss_pred             EEEeCCCcEEEEcCCCCceEEEEecCCC-CEEEEEEcCCCCEEEEeeCCCeEE-EEECCcccEEEeeecCCCCeEEEEEc
Q 022910          123 ASGGLDGLVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDSTVW-MWNADRAAYLNMFSGHGSSVTCGDFT  200 (290)
Q Consensus       123 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~i~~~~~~  200 (290)
                      ++++ ++.|++|++.+++.. .+..+.. .+..++|+ +++.|++++.++.+. +|++.+++..... .+...+..++|+
T Consensus       312 a~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~S  387 (1045)
T 1k32_A          312 AFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVD  387 (1045)
T ss_dssp             EEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEEC
T ss_pred             EEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEEC
Confidence            9888 789999999887754 3555666 79999999 999999998888899 9999887655443 777889999999


Q ss_pred             CCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC----------cEEEEEcCCCcE
Q 022910          201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG----------SVHMVNITTGKV  270 (290)
Q Consensus       201 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~~wd~~~~~~  270 (290)
                      |+|++|++++.++.|++||+.+++....+..   +...+..++|+|+|++|++++.++          .|++||+.+++ 
T Consensus       388 pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-  463 (1045)
T 1k32_A          388 RNGKFAVVANDRFEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-  463 (1045)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-
T ss_pred             CCCCEEEEECCCCeEEEEECCCCceEEeccC---CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-
Confidence            9999999999999999999999887766655   667789999999999998887654          89999999887 


Q ss_pred             EEEEccCCCcEEEEEEecCC
Q 022910          271 VSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       271 ~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +..+..|...+..++|+|||
T Consensus       464 ~~~l~~~~~~~~~~~~spdG  483 (1045)
T 1k32_A          464 IFAATTENSHDYAPAFDADS  483 (1045)
T ss_dssp             EEECSCSSSBEEEEEECTTS
T ss_pred             EEEeeCCCcccCCceEcCCC
Confidence            77788888899999999986

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=1.5e-22  Score=167.34  Aligned_cols=214  Identities=10%  Similarity=0.028  Sum_probs=165.8

Q ss_pred             EEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecccc-CCEEEEEECCCCCEEE-EEeCCCcEEEEcCCCCceEEEEe
Q 022910           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK-DSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCTLE  146 (290)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~  146 (290)
                      .+++++ ++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+.
T Consensus         4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            456777 78899999999999999999998887776443 2578899999998655 45568999999999998887776


Q ss_pred             cCC------CCEEEEEEcCCCCEEEEeeCC------------CeEEEEECCcccE---EEeeecCCCCeEEEEEcCCCCE
Q 022910          147 GPG------GGVEWVSWHPRGHIVLAGSED------------STVWMWNADRAAY---LNMFSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       147 ~~~------~~i~~i~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~  205 (290)
                      ...      ..+..++|+|++++|++++.+            +.|.+||+.+++.   +..+. +...+.+++|+|+++ 
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-  160 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence            432      236789999999999998865            8999999988543   33333 344688999999999 


Q ss_pred             EEEEeCCCeEEEEcCCCCeeeEEEeCCCC---------------------------------------------------
Q 022910          206 ICTGSDDATLRVWNPKSGENIHVIRGHPY---------------------------------------------------  234 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------------------------------------------  234 (290)
                      +++++  +.|++||+.+++....+.....                                                   
T Consensus       161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  238 (349)
T 1jmx_B          161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  238 (349)
T ss_dssp             EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence            66654  3499999999887766643210                                                   


Q ss_pred             --------------cccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          235 --------------HTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       235 --------------~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                                    ....+..++|+| ++++|+++  ++.|++||+.+++.+..+.. ...+.+++|+|+|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg  306 (349)
T 1jmx_B          239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKG  306 (349)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSS
T ss_pred             eccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCC
Confidence                          011355778889 99999988  88999999999999888874 3457899999985

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=3.6e-23  Score=186.99  Aligned_cols=229  Identities=15%  Similarity=0.136  Sum_probs=171.1

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-----CeeeeeeccccCC--------------EEEEEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHKDS--------------VSSLAF  115 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~--------------i~~~~~  115 (290)
                      .....+..+...+.+++|+| +++.|+++ .++.|++|++.+     ++.......+...              +.++.|
T Consensus       111 ~~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~  188 (706)
T 2z3z_A          111 RKVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFW  188 (706)
T ss_dssp             TEEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEE
T ss_pred             CceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEE
Confidence            34455666778889999999 66667664 579999999998     7766544434333              478999


Q ss_pred             CCCCCEEEEEe---------------------------------CCCcEEEEcCCCCceEEEEe--cCCCCEEEEEEcCC
Q 022910          116 SMDGQLLASGG---------------------------------LDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHPR  160 (290)
Q Consensus       116 ~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~  160 (290)
                      +|+|++|++++                                 .+..|++||+.+++......  .+...+.+++|+|+
T Consensus       189 SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd  268 (706)
T 2z3z_A          189 SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPD  268 (706)
T ss_dssp             CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTT
T ss_pred             CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECC
Confidence            99999999987                                 44689999999887654442  35567999999999


Q ss_pred             CCEEEEeeCCC-----eEEEEECCcccEEEeee-c-CCC---CeEEEEEcC--CCCEEEEEeCCCeEEEEcCC-CCeeeE
Q 022910          161 GHIVLAGSEDS-----TVWMWNADRAAYLNMFS-G-HGS---SVTCGDFTP--DGKTICTGSDDATLRVWNPK-SGENIH  227 (290)
Q Consensus       161 ~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~-~-~~~---~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~-~~~~~~  227 (290)
                      +++|++++.++     .|++||+.+++....+. . +..   .+..++|+|  +|++++++..+|.+++|.+. ++..+.
T Consensus       269 g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~  348 (706)
T 2z3z_A          269 ENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR  348 (706)
T ss_dssp             SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE
T ss_pred             CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE
Confidence            99999987765     89999999883333332 1 222   246789999  99999999999998998775 555556


Q ss_pred             EEeCCCCcccCeEE-EEEcCCCCEEEEEeC-CC----cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          228 VIRGHPYHTEGLTC-LTISADSTLALSGSK-DG----SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       228 ~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~-dg----~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .+..   +...+.. ++|+|+++.|+.++. ++    .|+.|++.+++ +..+. |...+.+++|||||
T Consensus       349 ~l~~---~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg  412 (706)
T 2z3z_A          349 QVTK---GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDG  412 (706)
T ss_dssp             ECCC---SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTS
T ss_pred             ecCC---CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCC
Confidence            6554   5556766 799999987766554 44    67778887766 34444 66789999999986

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=4.7e-22  Score=164.33  Aligned_cols=212  Identities=12%  Similarity=0.052  Sum_probs=163.1

Q ss_pred             ceeeeccCC-cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccc------cCCEEEEEECCCCCEEEEEeCC
Q 022910           56 STHIFSGHS-DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH------KDSVSSLAFSMDGQLLASGGLD  128 (290)
Q Consensus        56 ~~~~~~~h~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d  128 (290)
                      .+..+..+. ..+..++|+|++..+++++..++.|.+|++.+++.+..+...      ...+..++|+|++++|++++.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  112 (349)
T 1jmx_B           33 VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP  112 (349)
T ss_dssp             EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred             EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccc
Confidence            344444333 257889999955556677778899999999998887766532      2237789999999999998865


Q ss_pred             ------------CcEEEEcCCCCce---EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCC--
Q 022910          129 ------------GLVQIWDPSSGNL---KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG--  191 (290)
Q Consensus       129 ------------g~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--  191 (290)
                                  +.|.+||+.+++.   +..+..+ ..+.+++|+|+++ +++++.  .|++||+.+++.+..+....  
T Consensus       113 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~  188 (349)
T 1jmx_B          113 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWN  188 (349)
T ss_dssp             EEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCC
T ss_pred             ccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccC
Confidence                        8999999988543   3444433 3588899999999 555543  49999999887766554221  


Q ss_pred             ------------------------------------------------------------------CCeEEEEEcC-CCC
Q 022910          192 ------------------------------------------------------------------SSVTCGDFTP-DGK  204 (290)
Q Consensus       192 ------------------------------------------------------------------~~i~~~~~~~-~~~  204 (290)
                                                                                        ..+..++|+| +++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~  268 (349)
T 1jmx_B          189 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN  268 (349)
T ss_dssp             CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT
T ss_pred             CccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC
Confidence                                                                              1345677889 999


Q ss_pred             EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910          205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  277 (290)
                      +++++  ++.|++||+.+++.+..+..    ...+.+++|+|++++|++++.++.|++||+.+++.+..+..+
T Consensus       269 ~l~~~--~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          269 QIYGV--LNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEEE--cCeEEEEECccCeEEEEEcC----CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            99888  88999999999988777763    345678999999999988888999999999999999988765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=4.2e-21  Score=159.82  Aligned_cols=224  Identities=14%  Similarity=0.148  Sum_probs=159.2

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCC----CcEEEEEccC--Cee--eeeeccccCCEEEEEECCCCCEEEEEe-CCCcEEE
Q 022910           63 HSDEVYSVACSPTDATLVATGGGD----DKGFFWRINQ--GDW--ASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQI  133 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i  133 (290)
                      +...+..++|+| ++++|++++.+    +.|.+|++..  ++.  +.....+......+++  ++++|++++ .++.|.+
T Consensus        48 ~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence            677788899999 66667776664    7999999876  432  3333434556777888  788777766 5789999


Q ss_pred             EcCCCCceEEE----Ee--c--------CCCCEEEEEEcCCCCEEEEee-CCCeEEEEECCcccE------E-------E
Q 022910          134 WDPSSGNLKCT----LE--G--------PGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAY------L-------N  185 (290)
Q Consensus       134 ~d~~~~~~~~~----~~--~--------~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------~-------~  185 (290)
                      |++.....+..    +.  +        +...+.+++|+|++++|++++ .++.|++|++.....      +       .
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            99975433211    11  1        122358899999999766655 478999999875431      1       1


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEcCCCCee--eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC--CcE
Q 022910          186 MFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKD--GSV  260 (290)
Q Consensus       186 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i  260 (290)
                      ........+..++|+|+++++++++ .++.|.+|++.++..  +..+.....+......++|+|+|++|+++..+  +.|
T Consensus       205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i  284 (361)
T 3scy_A          205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV  284 (361)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred             eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence            1223455678999999999888777 689999999987754  33344333344567899999999998777665  899


Q ss_pred             EEEEcC--CCc--EEEEEccCCCcEEEEEEecCC
Q 022910          261 HMVNIT--TGK--VVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       261 ~~wd~~--~~~--~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .+|++.  +++  .+..+.. ...+++++|+|||
T Consensus       285 ~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg  317 (361)
T 3scy_A          285 AIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNG  317 (361)
T ss_dssp             EEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTS
T ss_pred             EEEEEcCCCCcEEEeeEecC-CCCCceEEECCCC
Confidence            999995  455  4555555 5678899999986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=5.1e-23  Score=182.05  Aligned_cols=215  Identities=14%  Similarity=0.101  Sum_probs=159.8

Q ss_pred             CcCEEEEEECCCCCcEEEEecC-CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC---CCcEEEEcCCC-
Q 022910           64 SDEVYSVACSPTDATLVATGGG-DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSS-  138 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~-  138 (290)
                      ..+|++++|+| +++.||+++. +|+++||++..++.......+...+..++|+|+ +.+++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            56899999999 6667777665 999999999766654444333368999999999 77777664   45556655432 


Q ss_pred             --CceEEEEecCCCCEEEEEEcCCCCE-EEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC---
Q 022910          139 --GNLKCTLEGPGGGVEWVSWHPRGHI-VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD---  212 (290)
Q Consensus       139 --~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---  212 (290)
                        +... .+.... .+...+|+|+++. +++++..+.+.+||+.+++.......+.   .+++|+|+|++|++++.+   
T Consensus        99 ~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~  173 (582)
T 3o4h_A           99 RPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG  173 (582)
T ss_dssp             STTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT
T ss_pred             CCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC
Confidence              2322 333332 3556788888763 3344444556699998887655544333   789999999999988777   


Q ss_pred             -CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCcEEEEEccCCCcEEEEE----
Q 022910          213 -ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG--SVHMVNITTGKVVSSLVSHTDSIECIG----  285 (290)
Q Consensus       213 -g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~i~----  285 (290)
                       +.|++||+.+++.. .+..   +...+..++|+|||++|+++..++  .|++||+.+++.. .+..|...+..++    
T Consensus       174 ~~~i~~~d~~~g~~~-~l~~---~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          174 RVSLFTSNLSSGGLR-VFDS---GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             EEEEEEEETTTCCCE-EECC---SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred             CeEEEEEcCCCCCce-Eeec---CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence             78999999888764 4444   567789999999999999888888  8999999999888 7777877777777    


Q ss_pred             ----EecCC
Q 022910          286 ----FSRSE  290 (290)
Q Consensus       286 ----~s~d~  290 (290)
                          |+|||
T Consensus       249 ~~~~~spdg  257 (582)
T 3o4h_A          249 TWLGYLPDG  257 (582)
T ss_dssp             EEEEECTTS
T ss_pred             cceeEcCCC
Confidence                99986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=4.2e-22  Score=187.22  Aligned_cols=195  Identities=12%  Similarity=0.045  Sum_probs=162.8

Q ss_pred             CCcCEEEEEEC-CCCCcEEEEecCCCcEEEEEccCCeeeeeeccccC-CEEEEEECCCCCEEEEEeCCCcEE-EEcCCCC
Q 022910           63 HSDEVYSVACS-PTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD-SVSSLAFSMDGQLLASGGLDGLVQ-IWDPSSG  139 (290)
Q Consensus        63 h~~~v~~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~  139 (290)
                      |...|.+++|+ | ++..|++++ ++.|.+|++..+.... +..|.. .+..++|+ +++.|++++.++.+. +|++.++
T Consensus       294 ~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~  369 (1045)
T 1k32_A          294 SIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG  369 (1045)
T ss_dssp             ECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred             cccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC
Confidence            45578999999 9 666666666 7899999998776543 556777 89999999 999999998888888 9999887


Q ss_pred             ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC------
Q 022910          140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA------  213 (290)
Q Consensus       140 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------  213 (290)
                      +.... ..+...+..++|+|++++|++++.++.|++||+.+++.......|...+.+++|+|+|++|++++.++      
T Consensus       370 ~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~  448 (1045)
T 1k32_A          370 KAEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG  448 (1045)
T ss_dssp             CEEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             CceEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccC
Confidence            65543 46778899999999999999999999999999999988887778888999999999999998877654      


Q ss_pred             ----eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          214 ----TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       214 ----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                          .|++||+.+++ ...+..   +...+..++|+|+|++|++++.++...+|+..
T Consensus       449 ~~~~~i~l~d~~~g~-~~~l~~---~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          449 YVMQAIHVYDMEGRK-IFAATT---ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             CCEEEEEEEETTTTE-EEECSC---SSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             CCCCeEEEEECCCCc-EEEeeC---CCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence                89999999877 444444   56678889999999999999987777766643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=3.4e-20  Score=154.29  Aligned_cols=223  Identities=11%  Similarity=0.141  Sum_probs=154.7

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--------------cccCCEEEEEECCCCCEEEE
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--------------GHKDSVSSLAFSMDGQLLAS  124 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~  124 (290)
                      ....+......+++  ++..++++...++.|.+|++.....+..+.              .+...+.+++|+|++++|++
T Consensus        94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~  171 (361)
T 3scy_A           94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA  171 (361)
T ss_dssp             EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred             EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence            33445567778888  366666666678999999997543322111              12234688999999997766


Q ss_pred             Ee-CCCcEEEEcCCCCc-------eE------EEEecCCCCEEEEEEcCCCCEEEEee-CCCeEEEEECCcccE--EEee
Q 022910          125 GG-LDGLVQIWDPSSGN-------LK------CTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAY--LNMF  187 (290)
Q Consensus       125 ~~-~dg~i~i~d~~~~~-------~~------~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~  187 (290)
                      ++ .++.|.+|++....       +.      .........+..++|+|+++++++++ .++.|.+|++.+++.  +..+
T Consensus       172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~  251 (361)
T 3scy_A          172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTV  251 (361)
T ss_dssp             EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEE
T ss_pred             EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEE
Confidence            55 47899999887543       21      11223445688999999999887777 689999999986643  2222


Q ss_pred             e---cCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEcCC--CCee--eEEEeCCCCcccCeEEEEEcCCCCEEEEEe-CC
Q 022910          188 S---GHGSSVTCGDFTPDGKTICTGSDD--ATLRVWNPK--SGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGS-KD  257 (290)
Q Consensus       188 ~---~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~--~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d  257 (290)
                      .   .+...+..++|+|+|++|+++..+  +.|.+|++.  +++.  +..+..    ...+..++|+|+|++|++++ .+
T Consensus       252 ~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~----g~~~~~~~~spdg~~l~~~~~~~  327 (361)
T 3scy_A          252 AADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT----GIHPRNFIITPNGKYLLVACRDT  327 (361)
T ss_dssp             ESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC----SSCCCEEEECTTSCEEEEEETTT
T ss_pred             ecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC----CCCCceEEECCCCCEEEEEECCC
Confidence            2   233457899999999999776654  899999985  3442  223331    34678899999999888887 57


Q ss_pred             CcEEEE--EcCCCcEEEEEc-cCCCcEEEEEEe
Q 022910          258 GSVHMV--NITTGKVVSSLV-SHTDSIECIGFS  287 (290)
Q Consensus       258 g~i~~w--d~~~~~~~~~~~-~~~~~v~~i~~s  287 (290)
                      +.|.+|  |..++++..... .+...+.||+|.
T Consensus       328 ~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          328 NVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            889996  555777655432 345679999997

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=1.6e-23  Score=189.71  Aligned_cols=218  Identities=13%  Similarity=0.139  Sum_probs=161.2

Q ss_pred             EEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccC---CEEEEEECCCCCEEEEEeC---------CCcEEEEcC
Q 022910           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD---SVSSLAFSMDGQLLASGGL---------DGLVQIWDP  136 (290)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~  136 (290)
                      +++|+| ++.+++++ .++.|++|++.+++....+..+..   .+.+++|+|+|++|++++.         ++.|++||+
T Consensus        20 ~~~~s~-dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWIS-GQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESS-SSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECC-CCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            779999 55666554 699999999999987776665543   4889999999999998876         689999999


Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee-ecCCCCe-----------------EEEE
Q 022910          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-SGHGSSV-----------------TCGD  198 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i-----------------~~~~  198 (290)
                      .+++.+.... ....+..++|+|+|+.|+++. ++.|++|++.+++..+.. .++...|                 .+++
T Consensus        98 ~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A           98 SNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             TTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             CCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence            9887621111 124588899999999999986 689999999888765432 2222222                 4899


Q ss_pred             EcCCCCEEEEEeCCC----------------------------------eEEEEcCCCCeee--EEEeC---CCCcccCe
Q 022910          199 FTPDGKTICTGSDDA----------------------------------TLRVWNPKSGENI--HVIRG---HPYHTEGL  239 (290)
Q Consensus       199 ~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~--~~~~~---~~~~~~~v  239 (290)
                      |+|+|++|++++.|.                                  .|++||+.+++..  ..+..   ...+...+
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  255 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF  255 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence            999999999887552                                  7889999887642  12211   01256678


Q ss_pred             EEEEEcCCCCEEEEEeCC----CcEEEEE----cCCCcEEEEE----ccCCCcEE-----EEEEecCC
Q 022910          240 TCLTISADSTLALSGSKD----GSVHMVN----ITTGKVVSSL----VSHTDSIE-----CIGFSRSE  290 (290)
Q Consensus       240 ~~~~~~~~~~~l~~~~~d----g~i~~wd----~~~~~~~~~~----~~~~~~v~-----~i~~s~d~  290 (290)
                      ..++|+||++++++....    ..|++||    +.++++...+    ..|.+.|.     .++|+|||
T Consensus       256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence            999999998877774432    2489999    8777765544    36666676     88999986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=2e-20  Score=154.89  Aligned_cols=211  Identities=16%  Similarity=0.205  Sum_probs=147.3

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEec-CCCcEEEEEccC-C--eeeeeecc---------ccCCEEEEEECCCCCEEE
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGG-GDDKGFFWRINQ-G--DWASEIQG---------HKDSVSSLAFSMDGQLLA  123 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~-~--~~~~~~~~---------~~~~i~~~~~~~~~~~l~  123 (290)
                      +..+..+...+..++|+| ++.+|++++ .++.|.+|++.. +  +.+..+..         +...+.+++|+|++++++
T Consensus        78 ~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v  156 (347)
T 3hfq_A           78 LNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV  156 (347)
T ss_dssp             EEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred             eeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence            344455777889999999 555555554 789999999963 2  22233321         123488999999999666


Q ss_pred             EEeCCCcEEEEcCC-CCceEE--EEec-CCCCEEEEEEcCCCCEEEE-eeCCCeEEEEECCc--ccE--EEeeecCC---
Q 022910          124 SGGLDGLVQIWDPS-SGNLKC--TLEG-PGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADR--AAY--LNMFSGHG---  191 (290)
Q Consensus       124 ~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~---  191 (290)
                      +...++.|++|++. +++...  .+.. ....+..++|+|+++++++ +..++.|.+|++..  ++.  +..+....   
T Consensus       157 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~  236 (347)
T 3hfq_A          157 IDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY  236 (347)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC
T ss_pred             EeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC
Confidence            66678899999998 554332  2222 2336788999999996665 55688999999874  432  22333222   


Q ss_pred             ---CCeEEEEEcCCCCEEE-EEeCCCeEEEEcCCCC---eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-CcEEEE
Q 022910          192 ---SSVTCGDFTPDGKTIC-TGSDDATLRVWNPKSG---ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-GSVHMV  263 (290)
Q Consensus       192 ---~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~~w  263 (290)
                         ..+..++|+|+|++|+ +...++.|.+|++...   ..+..+..   +...+..++|+|+|++|++++.+ +.|.+|
T Consensus       237 ~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          237 TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST---EGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC---SSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec---CCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence               4588999999999875 5566899999998732   33333333   45567899999999988888764 899999


Q ss_pred             --EcCCCcEE
Q 022910          264 --NITTGKVV  271 (290)
Q Consensus       264 --d~~~~~~~  271 (290)
                        |..++++.
T Consensus       314 ~~d~~tg~l~  323 (347)
T 3hfq_A          314 ARDLTSGKLS  323 (347)
T ss_dssp             EECTTTCCEE
T ss_pred             EEeCCCCeEE
Confidence              55567655

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.89  E-value=6.9e-20  Score=150.68  Aligned_cols=223  Identities=14%  Similarity=0.147  Sum_probs=173.2

Q ss_pred             CcCEEEEEECCCCCcEEEEecCC------------------------CcEEEEEccCCeeeeeec-cccCCEEEEEECCC
Q 022910           64 SDEVYSVACSPTDATLVATGGGD------------------------DKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMD  118 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~  118 (290)
                      -+.+.+++++| +++++++...+                        +.|.+||..+++....+. .+-.....++++|+
T Consensus        23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            46899999999 67788887766                        479999998888776554 34457899999999


Q ss_pred             CCEEEEEeCCCcEEEEcCCCCc-eEEEEe---------cCCCCEEEEEEcC-CCCEEEEee-CCCeEEEEECCcccEEEe
Q 022910          119 GQLLASGGLDGLVQIWDPSSGN-LKCTLE---------GPGGGVEWVSWHP-RGHIVLAGS-EDSTVWMWNADRAAYLNM  186 (290)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---------~~~~~i~~i~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~  186 (290)
                      ++++++...++.|++|+..... .+..+.         .+......++++| ++.++++.+ .++.|++|+ ..++.+..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            9988888889999999986542 455552         3344689999999 788888876 689999999 45666666


Q ss_pred             eecCC----------CCeEEEEEcCC-CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE-
Q 022910          187 FSGHG----------SSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-  254 (290)
Q Consensus       187 ~~~~~----------~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  254 (290)
                      +....          ..+..|+++|+ +.++++...++.|++|+..+++.+..+.... +...+..++|+| +..+++. 
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~-~~~~~~~~~~~p-g~~~~~~g  258 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS-FGRNVFAISYIP-GFLFAVNG  258 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT-TTTCEEEEEEET-TEEEEEEC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc-cCCCcceeeecC-CEEEEeCC
Confidence            54222          34899999998 7777777889999999999888888775432 556788999999 4333333 


Q ss_pred             ------eCCCcEEEEEcCCCcEEEEEc---cCCCcEEEEEEecCC
Q 022910          255 ------SKDGSVHMVNITTGKVVSSLV---SHTDSIECIGFSRSE  290 (290)
Q Consensus       255 ------~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~i~~s~d~  290 (290)
                            ..+..|++|++.+++.+..+.   ++...+.+|+++|+|
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG  303 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG  303 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence                  335589999999999999884   566789999999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.88  E-value=7.2e-21  Score=158.77  Aligned_cols=224  Identities=8%  Similarity=0.102  Sum_probs=156.9

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc-CCeeeeeeccc-cCCEEEEEECCCCCE--EEEEe------------
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRIN-QGDWASEIQGH-KDSVSSLAFSMDGQL--LASGG------------  126 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~--l~~~~------------  126 (290)
                      +...+..++|+| ++++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++  ++++.            
T Consensus        38 ~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           38 QDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence            334678899999 66777777766 99999997 77654432211 123456899999994  45553            


Q ss_pred             -CCCcEEEEcCC-CCceEEEEe----cCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECC-cccEE--Eeee--cCCCCe
Q 022910          127 -LDGLVQIWDPS-SGNLKCTLE----GPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNAD-RAAYL--NMFS--GHGSSV  194 (290)
Q Consensus       127 -~dg~i~i~d~~-~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~-~~~~~--~~~~--~~~~~i  194 (290)
                       .+|.+.+|++. .++....+.    .+...+.+++|+|+|++|+++.. ++.|++|++. +++..  ..+.  .+...+
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p  195 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence             68999999997 466544443    24567999999999998887764 6799999998 66543  3333  235678


Q ss_pred             EEEEEcCCCCEEEEEeC-CCeEEEEcCC--CCeee---EEEeCCCC----ccc------CeEEEE-EcCCCCEEEEEeCC
Q 022910          195 TCGDFTPDGKTICTGSD-DATLRVWNPK--SGENI---HVIRGHPY----HTE------GLTCLT-ISADSTLALSGSKD  257 (290)
Q Consensus       195 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~---~~~~~~~~----~~~------~v~~~~-~~~~~~~l~~~~~d  257 (290)
                      ..++|+|+|++|++++. ++.|.+|++.  +++..   ..+...+.    +..      .+..++ |+|+|++|++++.+
T Consensus       196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            99999999999987775 7899998754  55542   22332211    121      478999 99999998877643


Q ss_pred             C------cEEEEEcC-CCcEEE---EEccCCCcEEEEEEec
Q 022910          258 G------SVHMVNIT-TGKVVS---SLVSHTDSIECIGFSR  288 (290)
Q Consensus       258 g------~i~~wd~~-~~~~~~---~~~~~~~~v~~i~~s~  288 (290)
                      .      .|.+|++. ++++..   .+..+...+..++|+|
T Consensus       276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp  316 (365)
T 1jof_A          276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence            2      89999996 676543   2333455677888998

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=1.9e-21  Score=172.05  Aligned_cols=219  Identities=13%  Similarity=0.153  Sum_probs=160.6

Q ss_pred             CceeeeccCC-cCEEEEEECCCCCcEEEEecC---CCcEEEEEccC--CeeeeeeccccCCEEEEEECCCCCE-EEEEeC
Q 022910           55 DSTHIFSGHS-DEVYSVACSPTDATLVATGGG---DDKGFFWRINQ--GDWASEIQGHKDSVSSLAFSMDGQL-LASGGL  127 (290)
Q Consensus        55 ~~~~~~~~h~-~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~  127 (290)
                      ...+.+..|. ..+..++|+| + +++++++.   +...++|.+..  ......+.... .+...+|+|+++. +++.+.
T Consensus        54 g~~~~lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~  130 (582)
T 3o4h_A           54 GETVKLNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGAT  130 (582)
T ss_dssp             TEEEECCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC-SBEEEEEEECSSCEEEEEEC
T ss_pred             CCcEeeecccccccccccCCC-C-eEEEEeccCCCCcceEEEEEeccCCCccccccCCC-CceeeeeCCCCCeEEEEecC
Confidence            3345566666 6899999999 5 67777664   45566766543  22222333222 3446688888863 333344


Q ss_pred             CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC----CeEEEEECCcccEEEeeecCCCCeEEEEEcCCC
Q 022910          128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG  203 (290)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  203 (290)
                      ++.+.+||+.+++.......+.   .+++|+|+|++|++++.+    +.|++||+.+++.. .+..+...+..++|+|+|
T Consensus       131 ~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG  206 (582)
T 3o4h_A          131 EDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGM  206 (582)
T ss_dssp             SSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTS
T ss_pred             CCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCC
Confidence            4556699999887665554433   789999999999988876    78999999888754 567788889999999999


Q ss_pred             CEEEEEeCCC--eEEEEcCCCCeeeEEEeCCCCcccCeEEEE--------EcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 022910          204 KTICTGSDDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLT--------ISADSTLALSGSKDGSVHMVNITTGKVVSS  273 (290)
Q Consensus       204 ~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  273 (290)
                      ++|+++..++  .|++||+.+++.. .+..   +...+..++        |+|+|.++++++.+|.+++|++  ++.+. 
T Consensus       207 ~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-  279 (582)
T 3o4h_A          207 KVTAGLETAREARLVTVDPRDGSVE-DLEL---PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-  279 (582)
T ss_dssp             CEEEEEECSSCEEEEEECTTTCCEE-ECCC---SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-
T ss_pred             CEEEEccCCCeeEEEEEcCCCCcEE-EccC---CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-
Confidence            9999888888  8999999988876 4443   444455555        9999999999999999999999  66554 


Q ss_pred             EccCCCcEEEEEEecCC
Q 022910          274 LVSHTDSIECIGFSRSE  290 (290)
Q Consensus       274 ~~~~~~~v~~i~~s~d~  290 (290)
                        .+.+.|.+++|+ +|
T Consensus       280 --~~~~~v~~~~~s-dg  293 (582)
T 3o4h_A          280 --APQGNHGRVVLW-RG  293 (582)
T ss_dssp             --CCSSEEEEEEEE-TT
T ss_pred             --cCCCceEEEEec-CC
Confidence              345788899998 64

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.87  E-value=1.3e-19  Score=150.89  Aligned_cols=225  Identities=15%  Similarity=0.130  Sum_probs=156.8

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEec----------CCCcEEEEEccCCeeeeeeccc------cCCEEEEEECCC
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGG----------GDDKGFFWRINQGDWASEIQGH------KDSVSSLAFSMD  118 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~------~~~i~~~~~~~~  118 (290)
                      +.+..+..+..+  .++|+| ++++++++.          .++.|.+||+.+++.+..+...      ......++|+|+
T Consensus        42 ~~~~~i~~g~~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd  118 (361)
T 2oiz_A           42 KFLGMVPTAFNG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD  118 (361)
T ss_dssp             CEEEEEECCEEE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT
T ss_pred             eEEEEecCCCCC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC
Confidence            345566666666  899999 666666654          3567999999998887776532      234567999999


Q ss_pred             CCEEEEEeC--CCcEEEEcCCCCceEEE-EecCCCCEEEEEEcCCC-CEEEEeeCC------------------------
Q 022910          119 GQLLASGGL--DGLVQIWDPSSGNLKCT-LEGPGGGVEWVSWHPRG-HIVLAGSED------------------------  170 (290)
Q Consensus       119 ~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~-~~l~~~~~d------------------------  170 (290)
                      |++|+++..  ++.|.+||+.+++.+.. +....  ...+.+.|.+ ..+++.+.+                        
T Consensus       119 g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~  196 (361)
T 2oiz_A          119 GKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMF  196 (361)
T ss_dssp             SSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCS
T ss_pred             CCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceE
Confidence            999998864  58999999999988776 43211  1112233322 233333333                        


Q ss_pred             ------------------------CeEEEEECCccc--EEEeeecC----------CCCeEEEEEcCCCCEEEEEeC---
Q 022910          171 ------------------------STVWMWNADRAA--YLNMFSGH----------GSSVTCGDFTPDGKTICTGSD---  211 (290)
Q Consensus       171 ------------------------g~i~i~d~~~~~--~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~---  211 (290)
                                              +.|+++|+....  ....+...          ......++|+|+++.++++..   
T Consensus       197 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~  276 (361)
T 2oiz_A          197 SVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDG  276 (361)
T ss_dssp             CTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSC
T ss_pred             cCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCC
Confidence                                    344444443221  11111000          011112688999888877643   


Q ss_pred             --------CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--cEEEEEccCCCcE
Q 022910          212 --------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--KVVSSLVSHTDSI  281 (290)
Q Consensus       212 --------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~~~~~v  281 (290)
                              .+.|.+||+.+++.+..+..   +.  +.+++|+|+|++|++++. +.|.+||+.++  +++.++..+....
T Consensus       277 ~~~~~~~~~~~v~viD~~t~~~v~~i~~---~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P  350 (361)
T 2oiz_A          277 KEGTHKFPAAEIWVMDTKTKQRVARIPG---RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEAS  350 (361)
T ss_dssp             CTTCTTCCCSEEEEEETTTTEEEEEEEC---TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSE
T ss_pred             CcccccCCCceEEEEECCCCcEEEEEec---CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCc
Confidence                    34899999999999988886   33  899999999999999887 99999999999  9999987777889


Q ss_pred             EEEEEecCC
Q 022910          282 ECIGFSRSE  290 (290)
Q Consensus       282 ~~i~~s~d~  290 (290)
                      ..++|+|+|
T Consensus       351 ~~~~~~p~G  359 (361)
T 2oiz_A          351 LQVQFHPVG  359 (361)
T ss_dssp             EEEEECCCS
T ss_pred             EEEEecCCC
Confidence            999999997

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.86  E-value=2.4e-18  Score=138.54  Aligned_cols=222  Identities=13%  Similarity=0.190  Sum_probs=168.7

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec------cccCCEEEEEE-CCCCCEEEEEeC-CCcEEE
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ------GHKDSVSSLAF-SMDGQLLASGGL-DGLVQI  133 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------~~~~~i~~~~~-~~~~~~l~~~~~-dg~i~i  133 (290)
                      +|-..+.+++++| ++.++++...++.|.+|+.. ++.+..+.      .+...+..+++ .+++.++++... ++.|++
T Consensus        27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            4556789999999 66788888888999999987 55555543      24457899999 467766666543 789999


Q ss_pred             EcCCCCceEEEEec-CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee--cCCCCeEEEEEcCCCCEEEEEe
Q 022910          134 WDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       134 ~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      |+ .+++.+..+.. +...+..++++|+++++++...++.|++|+.. ++.+..+.  .+...+..++++|+++++++..
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            99 56776666643 33568999999999988887888999999964 45555553  3445689999999999888878


Q ss_pred             CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCcEEEEEccCC--CcEEEEEEe
Q 022910          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVVSSLVSHT--DSIECIGFS  287 (290)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~--~~v~~i~~s  287 (290)
                      .++.|++|+.. ++.+..+... .+...+..++++++|+++++...++ .|++|+. +++.+..+..+.  ..+.+++|+
T Consensus       183 ~~~~i~~~~~~-g~~~~~~~~~-g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~  259 (286)
T 1q7f_A          183 RAHCVKVFNYE-GQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM  259 (286)
T ss_dssp             GGTEEEEEETT-CCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred             CCCEEEEEcCC-CCEEEEEccC-CccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence            89999999984 5555555432 1235688999999999888888776 9999995 677787776543  347899999


Q ss_pred             cCC
Q 022910          288 RSE  290 (290)
Q Consensus       288 ~d~  290 (290)
                      |+|
T Consensus       260 ~~g  262 (286)
T 1q7f_A          260 DDG  262 (286)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=3.5e-21  Score=174.88  Aligned_cols=221  Identities=14%  Similarity=0.182  Sum_probs=160.2

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCC-----EEEEEECCCCCEEEEEeCC---------Cc
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS-----VSSLAFSMDGQLLASGGLD---------GL  130 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~d---------g~  130 (290)
                      ....+++|+| ++.+++++  ++.|++|++.+++....+..|...     ...+.|||+|++|+.++.+         +.
T Consensus        17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            3456899999 77888876  899999999999877777766532     2447899999999998875         66


Q ss_pred             EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee-ecCCCCe---------------
Q 022910          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-SGHGSSV---------------  194 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i---------------  194 (290)
                      +.+||+.+++.. .+..+...+...+|||+|+.||.+. ++.|++|++.++...+.. .++...+               
T Consensus        94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A           94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (740)
T ss_dssp             EEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence            779999998755 4555677899999999999999885 689999999887654322 2222222               


Q ss_pred             --EEEEEcCCCCEEEEEeCCC------------------------------------eEEEEcCCC---Ce--eeEEEeC
Q 022910          195 --TCGDFTPDGKTICTGSDDA------------------------------------TLRVWNPKS---GE--NIHVIRG  231 (290)
Q Consensus       195 --~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~--~~~~~~~  231 (290)
                        ..+.|||+|++|+.++.|.                                    .|++||+.+   ++  ....+..
T Consensus       172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence              3589999999998775221                                    588899988   63  2233332


Q ss_pred             CC---CcccCeEEEEEcCCCCEEEEEeC----CCcEEEEEcCCCc----EE--EEE--ccCCCcEE-----EEEEecCC
Q 022910          232 HP---YHTEGLTCLTISADSTLALSGSK----DGSVHMVNITTGK----VV--SSL--VSHTDSIE-----CIGFSRSE  290 (290)
Q Consensus       232 ~~---~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~----~~--~~~--~~~~~~v~-----~i~~s~d~  290 (290)
                      ..   .+...+..++|+|||++++....    +..|++||+.+++    +.  ..+  ..|...|.     .++|+|||
T Consensus       252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG  330 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG  330 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence            10   15567899999999997665533    3479999999887    22  122  34555554     78899986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=4.7e-20  Score=154.76  Aligned_cols=214  Identities=12%  Similarity=0.033  Sum_probs=156.9

Q ss_pred             CCCceeeeccCCcCEEE-----EEECCCCCcEEEEecC-CC--cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEE
Q 022910           53 PDDSTHIFSGHSDEVYS-----VACSPTDATLVATGGG-DD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS  124 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~-----~~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  124 (290)
                      ....+..+..|......     .+|+| +++.|+.++. ++  .|.+|++.+++.......+...+..+.|+|++++|+.
T Consensus        19 ~g~~~~~lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~   97 (388)
T 3pe7_A           19 TGAQVTRLTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY   97 (388)
T ss_dssp             TCCEEEECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred             CCcceEEecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE
Confidence            35567788888877776     88999 5555555554 66  4888899888877766666555556789999999999


Q ss_pred             EeCCCcEEEEcCCCCceEEEEecCCCCEEEEE--EcCCCCEEEEe----------------------eCCCeEEEEECCc
Q 022910          125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS--WHPRGHIVLAG----------------------SEDSTVWMWNADR  180 (290)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~--~~~~~~~l~~~----------------------~~dg~i~i~d~~~  180 (290)
                      ++.++.|++||+.+++....+..+...+....  ++|++.+++..                      ..+..|++||+.+
T Consensus        98 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  177 (388)
T 3pe7_A           98 VKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT  177 (388)
T ss_dssp             EETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred             EeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence            99999999999999988777776665554444  48999988742                      2447899999998


Q ss_pred             ccEEEeeecCCCCeEEEEEcC-CCCEEEEEeCC------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEE
Q 022910          181 AAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS  253 (290)
Q Consensus       181 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  253 (290)
                      ++.... ..+...+..++|+| +++.|+.....      ..|.++|+..+.. ..+.... ....+..+.|+|+|+.|+.
T Consensus       178 g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~-~~~~~~~~~~spdg~~l~~  254 (388)
T 3pe7_A          178 GESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHA-EGESCTHEFWVPDGSALVY  254 (388)
T ss_dssp             CCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCC-TTEEEEEEEECTTSSCEEE
T ss_pred             CceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCC-CCcccccceECCCCCEEEE
Confidence            875444 34567789999999 99988877653      3788888876543 3333211 1135778899999997765


Q ss_pred             EeC-CC----cEEEEEcCCCcE
Q 022910          254 GSK-DG----SVHMVNITTGKV  270 (290)
Q Consensus       254 ~~~-dg----~i~~wd~~~~~~  270 (290)
                      .+. ++    .|++||+.+++.
T Consensus       255 ~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          255 VSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             EEEETTCCCEEEEEECTTTCCE
T ss_pred             EecCCCCCcceEEEEecCCCce
Confidence            443 22    399999998874

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=3.7e-21  Score=174.15  Aligned_cols=226  Identities=14%  Similarity=0.138  Sum_probs=158.6

Q ss_pred             CceeeeccCCc---CEEEEEECCCCCcEEEEecC---------CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEE
Q 022910           55 DSTHIFSGHSD---EVYSVACSPTDATLVATGGG---------DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL  122 (290)
Q Consensus        55 ~~~~~~~~h~~---~v~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  122 (290)
                      .....+.+|..   .|.+++|+| ++++|++++.         ++.|++|++.+++.+.... ....+..++|+|+|++|
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~l  124 (719)
T 1z68_A           47 QSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKL  124 (719)
T ss_dssp             CEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCE
T ss_pred             cEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEE
Confidence            34455555544   489999999 7777777665         6899999999887631111 12468889999999999


Q ss_pred             EEEeCCCcEEEEcCCCCceEEEEe-cCCCCE-----------------EEEEEcCCCCEEEEeeCCC-------------
Q 022910          123 ASGGLDGLVQIWDPSSGNLKCTLE-GPGGGV-----------------EWVSWHPRGHIVLAGSEDS-------------  171 (290)
Q Consensus       123 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i-----------------~~i~~~~~~~~l~~~~~dg-------------  171 (290)
                      +.+. ++.|++|++.+++...... ++...+                 .+++|+|+|++|++++.+.             
T Consensus       125 a~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~  203 (719)
T 1z68_A          125 AYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGD  203 (719)
T ss_dssp             EEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCS
T ss_pred             EEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCC
Confidence            9986 7899999999887654332 222222                 4899999999999987652             


Q ss_pred             ---------------------eEEEEECCcccEE--------EeeecCCCCeEEEEEcCCCCEEEEEeCC----CeEEEE
Q 022910          172 ---------------------TVWMWNADRAAYL--------NMFSGHGSSVTCGDFTPDGKTICTGSDD----ATLRVW  218 (290)
Q Consensus       172 ---------------------~i~i~d~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~  218 (290)
                                           .|++||+.+++..        ..+..+...+..++|+|+++++++....    ..|.+|
T Consensus       204 ~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~  283 (719)
T 1z68_A          204 EQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSIC  283 (719)
T ss_dssp             SSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEE
T ss_pred             CCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEE
Confidence                                 7899999987642        1233577789999999998777764432    248889


Q ss_pred             c----CCCCeeeEEE----eCCCCcccCeE-----EEEEcCCCCEEEE--EeCCC--cEEEEEcCCCcEEEEEccCCCcE
Q 022910          219 N----PKSGENIHVI----RGHPYHTEGLT-----CLTISADSTLALS--GSKDG--SVHMVNITTGKVVSSLVSHTDSI  281 (290)
Q Consensus       219 d----~~~~~~~~~~----~~~~~~~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~~wd~~~~~~~~~~~~~~~~v  281 (290)
                      |    +.+++....+    ..   +...+.     .+.|+|+|+.|+.  +..+|  .|++|++.+++ ...+..+...|
T Consensus       284 d~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v  359 (719)
T 1z68_A          284 DFREDWQTWDCPKTQEHIEES---RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEA  359 (719)
T ss_dssp             EECSSSSSEECCGGGEEEEEC---SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCE
T ss_pred             cccCCCCCCceEEEEeccccc---CCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEE
Confidence            9    7777654333    12   344454     7899999986554  44555  57778887766 45566556667


Q ss_pred             EEEEEe
Q 022910          282 ECIGFS  287 (290)
Q Consensus       282 ~~i~~s  287 (290)
                      ..+.++
T Consensus       360 ~~~~~~  365 (719)
T 1z68_A          360 INIFRV  365 (719)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            776655

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.86  E-value=1e-18  Score=141.47  Aligned_cols=227  Identities=12%  Similarity=0.131  Sum_probs=171.9

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      +...+..+..+.....+++|+|++..+++++..++.|..|+..++  ...+..+...+.+++++|+++++++...++.|.
T Consensus        16 ~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           16 AGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE   93 (296)
T ss_dssp             TTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred             CCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence            455666777777888999999944448889988999999999877  555666777899999999999887777778999


Q ss_pred             EEcCCCCceEEEEecC----CCCEEEEEEcCCCCEEEE----ee-------------CCCeEEEEECCcccEEEeeecCC
Q 022910          133 IWDPSSGNLKCTLEGP----GGGVEWVSWHPRGHIVLA----GS-------------EDSTVWMWNADRAAYLNMFSGHG  191 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~  191 (290)
                      +|+..+++........    ...+..++++|+|+++++    |+             ..+.|..++.. ++ +..+..+.
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~  171 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDR  171 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCC
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCC
Confidence            9999888765443321    224667999999998887    33             13467777665 44 33444556


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEcCC-CCee---eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          192 SSVTCGDFTPDGKTICTGSDDATLRVWNPK-SGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       192 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      ..+..++|+|+++.|++.+.++.|++|++. ++..   ...+ ..  ....+..++++++|+++++.  ++.|.+|+.. 
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~--~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-  245 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TV--EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-  245 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC--SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred             CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC--CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence            678999999999999777788999999986 4443   2333 21  44566789999999877666  7899999986 


Q ss_pred             CcEEEEEccCCCcEEEEEEe-cCC
Q 022910          268 GKVVSSLVSHTDSIECIGFS-RSE  290 (290)
Q Consensus       268 ~~~~~~~~~~~~~v~~i~~s-~d~  290 (290)
                      ++.+..+..+.. +++++|. |++
T Consensus       246 g~~~~~~~~~~~-~~~~~f~~~d~  268 (296)
T 3e5z_A          246 GDELGRVLTPQT-TSNLCFGGPEG  268 (296)
T ss_dssp             SCEEEEEECSSC-CCEEEEESTTS
T ss_pred             CCEEEEEECCCC-ceeEEEECCCC
Confidence            888888887777 9999994 663

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.85  E-value=6.7e-18  Score=138.80  Aligned_cols=233  Identities=14%  Similarity=0.103  Sum_probs=170.9

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC----C
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD----G  129 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g  129 (290)
                      ......+..+...+.+++|+| ++.+++++..++.|.+|+..+++.......+...+.+++|+|+++++++...+    +
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~  112 (333)
T 2dg1_A           34 AEPWLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG  112 (333)
T ss_dssp             CEEEEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred             cceeEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence            345566777778889999999 66788888889999999998877655443466789999999999987777666    6


Q ss_pred             cEEEEcCCCCceEEEEe--cCCCCEEEEEEcCCCCEEEEeeC------CCeEEEEECCcccEEEeeecCCCCeEEEEEcC
Q 022910          130 LVQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP  201 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  201 (290)
                      .|.+|+..++.....+.  .....+..++++|+++++++...      .+.|..|+..+++..... .....+..++|+|
T Consensus       113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~  191 (333)
T 2dg1_A          113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALST  191 (333)
T ss_dssp             EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECT
T ss_pred             eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECC
Confidence            89999998887654443  23456899999999987777654      356777777655543322 2334578999999


Q ss_pred             CCCEEEE-EeCCCeEEEEcCCC-CeeeEEE-----eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910          202 DGKTICT-GSDDATLRVWNPKS-GENIHVI-----RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       202 ~~~~l~~-~~~dg~i~i~d~~~-~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  274 (290)
                      ++++|++ .+.++.|++|++.+ +..+..+     .... ....+..++++++|+++++...++.|.+|+. .++.+..+
T Consensus       192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~  269 (333)
T 2dg1_A          192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  269 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEE
Confidence            9986654 45678999999864 3322211     1111 1135788999999998888878899999998 57777777


Q ss_pred             ccCCC------cEEEEEEecCC
Q 022910          275 VSHTD------SIECIGFSRSE  290 (290)
Q Consensus       275 ~~~~~------~v~~i~~s~d~  290 (290)
                      ..+..      .+.+++|+||+
T Consensus       270 ~~~~~~~g~~~~~~~~~~~~dg  291 (333)
T 2dg1_A          270 LIPGRDEGHMLRSTHPQFIPGT  291 (333)
T ss_dssp             ECTTGGGTCSCBCCEEEECTTS
T ss_pred             EcCCCccccccCcceEEECCCC
Confidence            65443      68999999874

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.84  E-value=4.1e-19  Score=159.35  Aligned_cols=228  Identities=13%  Similarity=0.122  Sum_probs=160.3

Q ss_pred             eeeeccCCcCEE---------EEEEC--CCCCc-EEEEecCCCcEEEEEcc--CCeeeeeecc-----ccCCEEEEEECC
Q 022910           57 THIFSGHSDEVY---------SVACS--PTDAT-LVATGGGDDKGFFWRIN--QGDWASEIQG-----HKDSVSSLAFSM  117 (290)
Q Consensus        57 ~~~~~~h~~~v~---------~~~~~--~~~~~-~l~~~~~dg~i~iw~~~--~~~~~~~~~~-----~~~~i~~~~~~~  117 (290)
                      .+.+..|...+.         ..+|+  |++.. ++++...+..|.++++.  .......+..     |...+..++|+|
T Consensus        60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp  139 (662)
T 3azo_A           60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP  139 (662)
T ss_dssp             EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET
T ss_pred             cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC
Confidence            455566655555         55565  85555 44444446677777765  2033444444     566789999999


Q ss_pred             CCCEEEEEeCC----------CcEEEEcCCC------CceEEEEe-cCCCCEEEEEEcCCCCEEEEeeCC--------Ce
Q 022910          118 DGQLLASGGLD----------GLVQIWDPSS------GNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSED--------ST  172 (290)
Q Consensus       118 ~~~~l~~~~~d----------g~i~i~d~~~------~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d--------g~  172 (290)
                      +|++|++++.+          ..|++|++.+      ++.. .+. .+...+..++|+|+|++|+.++.+        ..
T Consensus       140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~  218 (662)
T 3azo_A          140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE  218 (662)
T ss_dssp             TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred             CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence            99999998876          5899999988      5543 444 455668889999999999987754        37


Q ss_pred             EEEEECC-cc---cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEcCCCCeeeEEEeCCCCcc-----cCeEE
Q 022910          173 VWMWNAD-RA---AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA--TLRVWNPKSGENIHVIRGHPYHT-----EGLTC  241 (290)
Q Consensus       173 i~i~d~~-~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~  241 (290)
                      |++||+. ++   +.......+...+..+.|+|+|++++++..++  .|.+||+.+++............     ..+..
T Consensus       219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~  298 (662)
T 3azo_A          219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW  298 (662)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred             EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence            9999998 56   44444444578899999999999888888888  78888876666533332211000     01567


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEE--EcCCCcEEEEEccCCCcEEEE-EEe
Q 022910          242 LTISADSTLALSGSKDGSVHMV--NITTGKVVSSLVSHTDSIECI-GFS  287 (290)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~i~~w--d~~~~~~~~~~~~~~~~v~~i-~~s  287 (290)
                      ++|+|+++++++++. +.+++|  ++.+++ +..+..|...+..+ +++
T Consensus       299 ~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~  345 (662)
T 3azo_A          299 FAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVS  345 (662)
T ss_dssp             EEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEE
T ss_pred             EeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecC
Confidence            899999999999998 999999  555454 67788887778776 444

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=2.4e-19  Score=160.78  Aligned_cols=228  Identities=15%  Similarity=0.110  Sum_probs=164.0

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEe--cCCCcEEEEEccCCeeeeeeccccCCEE---------EEEEC--CCCCE-E
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATG--GGDDKGFFWRINQGDWASEIQGHKDSVS---------SLAFS--MDGQL-L  122 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~i~---------~~~~~--~~~~~-l  122 (290)
                      ...+.+|...|..++|++ +..++++.  +.++...||....+.....+..+...+.         ...|+  |++++ |
T Consensus        16 ~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l   94 (662)
T 3azo_A           16 AALVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL   94 (662)
T ss_dssp             HHHHHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred             HHHHhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence            456788999999999998 66666666  5678999999655555556665665555         56565  99998 7


Q ss_pred             EEEeC-CCcEEEEcCC--C-CceEEEEec-----CCCCEEEEEEcCCCCEEEEeeCC----------CeEEEEECCc---
Q 022910          123 ASGGL-DGLVQIWDPS--S-GNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSED----------STVWMWNADR---  180 (290)
Q Consensus       123 ~~~~~-dg~i~i~d~~--~-~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d----------g~i~i~d~~~---  180 (290)
                      +.++. +..|.++++.  . +. ...+..     +...+..++|+|+|+.|++++.+          ..|++|++.+   
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  173 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA  173 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred             EEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence            76654 5677777776  3 44 344444     45678899999999999998876          5899999988   


Q ss_pred             ---ccEEEeee-cCCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEcCC-CC---eeeEEEeCCCCcccCeEEEEE
Q 022910          181 ---AAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDD--------ATLRVWNPK-SG---ENIHVIRGHPYHTEGLTCLTI  244 (290)
Q Consensus       181 ---~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~~~~v~~~~~  244 (290)
                         ++. ..+. .+...+..++|+|+|++|+.++.+        ..|++||+. ++   +.......   +...+..+.|
T Consensus       174 ~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~---~~~~~~~~~~  249 (662)
T 3azo_A          174 ADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG---PEEAIAQAEW  249 (662)
T ss_dssp             TCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE---TTBCEEEEEE
T ss_pred             ccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC---CCceEcceEE
Confidence               554 3444 455678889999999999877754        379999998 56   33333332   4577899999


Q ss_pred             cCCCCEEEEEeCCC--cEEEEEcCCCcEEEEEccCCCc--------EEEEEEecCC
Q 022910          245 SADSTLALSGSKDG--SVHMVNITTGKVVSSLVSHTDS--------IECIGFSRSE  290 (290)
Q Consensus       245 ~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~--------v~~i~~s~d~  290 (290)
                      +|+|++++++..++  .|++|++.+++.......+...        +..++|+|++
T Consensus       250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~  305 (662)
T 3azo_A          250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG  305 (662)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred             CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence            99999888888888  6777777677654433333221        4567777764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.83  E-value=2.7e-18  Score=155.27  Aligned_cols=225  Identities=12%  Similarity=0.074  Sum_probs=164.1

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecC-CC----cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc------
Q 022910           62 GHSDEVYSVACSPTDATLVATGGG-DD----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL------  130 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~------  130 (290)
                      +|...+..++|+| ++++||.+.. .|    .|++||+.+++.......+. .+..++|+|+|+.|+.++.++.      
T Consensus       122 ~~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          122 DGTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             TSCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             CCCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccc
Confidence            3555788999999 5666655433 33    89999999988765433222 3677999999999999888766      


Q ss_pred             ----------EEEEcCCCCce--EEEEec--CCCCEEEEEEcCCCCEEEEeeC-----CCeEEEEECCc------cc-EE
Q 022910          131 ----------VQIWDPSSGNL--KCTLEG--PGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNADR------AA-YL  184 (290)
Q Consensus       131 ----------i~i~d~~~~~~--~~~~~~--~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~  184 (290)
                                |++|++.+++.  ...+..  +...+..+.|+|+|++|+.++.     +..|++||+.+      +. ..
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  279 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence                      99999988763  233332  3455789999999999888765     56899999986      43 35


Q ss_pred             EeeecCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEcCCCCee--eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 022910          185 NMFSGHGSSVTCGDFTPDGKTICTGSDD----ATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDG  258 (290)
Q Consensus       185 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  258 (290)
                      ..+..+...+.. .|+|+|+.|+..+..    +.|.+||+.++..  ...+..+. ....+..+.|++++.++++...++
T Consensus       280 ~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          280 VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEEEEEETT
T ss_pred             EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEEEEEECC
Confidence            555556555554 488888888766553    3699999987642  34444321 113578899998888888888888


Q ss_pred             --cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          259 --SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       259 --~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                        .|++|++.+++.+..+..+.+.|..++++|++
T Consensus       358 ~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~  391 (710)
T 2xdw_A          358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKD  391 (710)
T ss_dssp             EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTC
T ss_pred             EEEEEEEECCCCCEEEecCCCCceEEEEecCCCC
Confidence              46777877888888888888889999998874

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=2e-19  Score=150.87  Aligned_cols=230  Identities=16%  Similarity=0.129  Sum_probs=157.6

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEE--ECCCCCEEEEE--------
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA--FSMDGQLLASG--------  125 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~--------  125 (290)
                      ......+|...+..++|+| ++..|+.++.++.|++|++.+++....+..+...+....  ++|++++++..        
T Consensus        72 ~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~  150 (388)
T 3pe7_A           72 ATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWV  150 (388)
T ss_dssp             EEECCCSSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred             eEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccc
Confidence            3344445555666788999 777788888889999999999887766665555554444  48999988743        


Q ss_pred             --------------eCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEeeCC------CeEEEEECCcccEE
Q 022910          126 --------------GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSED------STVWMWNADRAAYL  184 (290)
Q Consensus       126 --------------~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~  184 (290)
                                    ..+..|++||+.+++..... .+...+..+.|+| +++.|+.+...      ..|.++++..+...
T Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~  229 (388)
T 3pe7_A          151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR  229 (388)
T ss_dssp             CCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred             cccccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence                          23478999999998765444 4556789999999 99988877653      37888888766543


Q ss_pred             EeeecCC--CCeEEEEEcCCCCEEEEEeC-CC----eEEEEcCCCCeeeEEEeCCCCccc---CeEEEEEcCCCCEEEEE
Q 022910          185 NMFSGHG--SSVTCGDFTPDGKTICTGSD-DA----TLRVWNPKSGENIHVIRGHPYHTE---GLTCLTISADSTLALSG  254 (290)
Q Consensus       185 ~~~~~~~--~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~  254 (290)
                       .+..+.  ..+..++|+|+|+.|+..+. ++    .|++||+.+++....... ..+..   ....+.|+|+|+.|+..
T Consensus       230 -~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~~~~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          230 -KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM-PACSHLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             -ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE-CCEEEEEECTTSSEEEEEECCC---
T ss_pred             -EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC-CCceeeeecCCCCeEccCCCcceeE
Confidence             333333  35788899999997755432 22    399999998875332221 11100   01123699999888754


Q ss_pred             ---------eCCCcEEEEEcCCCcEEEEEccCCC-----------cEEEEEEecCC
Q 022910          255 ---------SKDGSVHMVNITTGKVVSSLVSHTD-----------SIECIGFSRSE  290 (290)
Q Consensus       255 ---------~~dg~i~~wd~~~~~~~~~~~~~~~-----------~v~~i~~s~d~  290 (290)
                               ..+..|++||+.+++. ..+..+..           .+.+++|+|||
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg  362 (388)
T 3pe7_A          308 VQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDD  362 (388)
T ss_dssp             ---------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred             eeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCC
Confidence                     4566899999988765 55555555           57889999986

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.83  E-value=6.7e-18  Score=135.15  Aligned_cols=205  Identities=12%  Similarity=0.089  Sum_probs=165.6

Q ss_pred             CcEEEEecCCCcEEEEEccCCeeeeeecccc-CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCC-CCEEE
Q 022910           77 ATLVATGGGDDKGFFWRINQGDWASEIQGHK-DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG-GGVEW  154 (290)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~  154 (290)
                      +++|++++.++.|.+||.++++.+.++..+. ..+.++.++|+|++|+  +.++.|+.||. +++.+..+..+. ..+.+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            4788899999999999999999999998765 4788999999999888  34778999999 899998888653 46888


Q ss_pred             EEEcCCCCEEEEeeC-CCeEEEEECCcccEEEeeec------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeE
Q 022910          155 VSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSG------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH  227 (290)
Q Consensus       155 i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  227 (290)
                      +.+.++|+++++.+. ++.|..++. +++.+..+..      +......+++.++|+++++...++.|..||.. ++.+.
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w  159 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN  159 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence            999999999999887 788888886 6666665542      11234556789999999999999999999998 99888


Q ss_pred             EEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC------CcEEEEEEecCC
Q 022910          228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT------DSIECIGFSRSE  290 (290)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------~~v~~i~~s~d~  290 (290)
                      .+...    ..+.++.+.+++++|++++.+++|..+|..+|+.+.++..+.      ..+.+++..++|
T Consensus       160 ~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G  224 (276)
T 3no2_A          160 SVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNG  224 (276)
T ss_dssp             EEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTS
T ss_pred             EEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCC
Confidence            88752    345567788999999999888899999999999999986432      225666665554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=3.4e-18  Score=142.58  Aligned_cols=198  Identities=15%  Similarity=0.194  Sum_probs=141.5

Q ss_pred             EEEEEECCCCCc--EEEEec-------------CCCcEEEEEcc-CCeeeeeec----cccCCEEEEEECCCCCEEEEEe
Q 022910           67 VYSVACSPTDAT--LVATGG-------------GDDKGFFWRIN-QGDWASEIQ----GHKDSVSSLAFSMDGQLLASGG  126 (290)
Q Consensus        67 v~~~~~~~~~~~--~l~~~~-------------~dg~i~iw~~~-~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~  126 (290)
                      +.+++|+| +++  +++++.             .+|.+.+|++. .++....+.    .+...+.+++|+|+|++|+++.
T Consensus        85 ~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           85 PRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             GGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            45688999 555  455553             68999999997 455544333    2456799999999999888775


Q ss_pred             C-CCcEEEEcCC-CCceE--EEEe--cCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECC--cccEE---Eeeec-----
Q 022910          127 L-DGLVQIWDPS-SGNLK--CTLE--GPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNAD--RAAYL---NMFSG-----  189 (290)
Q Consensus       127 ~-dg~i~i~d~~-~~~~~--~~~~--~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~---~~~~~-----  189 (290)
                      . ++.|++|++. +++..  ..+.  .+...+..++|+|+++++++++. ++.|.+|++.  +++..   ..+..     
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  243 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence            4 6799999998 67653  2333  23566999999999999888775 6899999865  45432   12221     


Q ss_pred             --CCC------CeEEEE-EcCCCCEEEEEeCCC------eEEEEcCC-CCeeeEE---EeCCCCcccCeEEEEEcC---C
Q 022910          190 --HGS------SVTCGD-FTPDGKTICTGSDDA------TLRVWNPK-SGENIHV---IRGHPYHTEGLTCLTISA---D  247 (290)
Q Consensus       190 --~~~------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~---~~~~~~~~~~v~~~~~~~---~  247 (290)
                        +..      .+..++ |+|+|++|+++..+.      .|.+|++. +++....   +..   +...+..++|+|   +
T Consensus       244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~---~~~~~~~~a~sp~~~d  320 (365)
T 1jof_A          244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT---PTSGGHSNAVSPCPWS  320 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC---SSCCTTCCCEEECTTC
T ss_pred             CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec---CCCCcccceecCCCcC
Confidence              121      488999 999999988765432      89999986 5554331   222   334456789999   8


Q ss_pred             CCEEEEEeCC-CcEEEEEcCCC
Q 022910          248 STLALSGSKD-GSVHMVNITTG  268 (290)
Q Consensus       248 ~~~l~~~~~d-g~i~~wd~~~~  268 (290)
                      |++|++++.+ +.|.+|++...
T Consensus       321 g~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          321 DEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTEEEEECSSSCEEEEEEEETT
T ss_pred             CCEEEEEEcCCCeEEEEEEchh
Confidence            9999999874 89999998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.81  E-value=3e-19  Score=150.06  Aligned_cols=230  Identities=11%  Similarity=0.011  Sum_probs=153.3

Q ss_pred             CceeeeccCCcC-----EEEEEECCCCCcEEEEecCC--CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC
Q 022910           55 DSTHIFSGHSDE-----VYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL  127 (290)
Q Consensus        55 ~~~~~~~~h~~~-----v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  127 (290)
                      ..+..+..+...     +.+++|+|++..++++...+  ..|.+|++.+++.......+......+.|+|++++|+.++.
T Consensus        21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~  100 (396)
T 3c5m_A           21 VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN  100 (396)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET
T ss_pred             cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc
Confidence            344555554333     67889999444444444333  36888898887755443333222334789999999999999


Q ss_pred             CCcEEEEcCCCCceEEEEecCCCCEEE-------------------EEEcCCCCEEEEe-----eCCCeEEEEECCcccE
Q 022910          128 DGLVQIWDPSSGNLKCTLEGPGGGVEW-------------------VSWHPRGHIVLAG-----SEDSTVWMWNADRAAY  183 (290)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~-------------------i~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~  183 (290)
                      ++.|++|++.+++.......+......                   +.|+|+++.++.+     ..+..|++||+.+++.
T Consensus       101 ~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (396)
T 3c5m_A          101 ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL  180 (396)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE
T ss_pred             CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE
Confidence            999999999998876666544442222                   3467777766654     3567899999998876


Q ss_pred             EEeeecCCCCeEEEEEcC-CCCEEEEEeCC------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC
Q 022910          184 LNMFSGHGSSVTCGDFTP-DGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       184 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  256 (290)
                      .... .+...+..+.|+| +++.|+..+.+      ..|.+|++..++. ..+... .....+..+.|+|+|++|+.++.
T Consensus       181 ~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~-~~~~~~~~~~~spdg~~l~~~~~  257 (396)
T 3c5m_A          181 EVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEH-AEGESCTHEFWIPDGSAMAYVSY  257 (396)
T ss_dssp             EEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCC-CTTEEEEEEEECTTSSCEEEEEE
T ss_pred             Eeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeecc-CCCccccceEECCCCCEEEEEec
Confidence            5544 4567789999999 78877765543      4688999876543 333221 01335788999999998777654


Q ss_pred             C-----CcEEEEEcCCCcEEEEEccCCCcEEEEEEec-CC
Q 022910          257 D-----GSVHMVNITTGKVVSSLVSHTDSIECIGFSR-SE  290 (290)
Q Consensus       257 d-----g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~-d~  290 (290)
                      +     +.|++||+.+++....... .. .. +.|+| ||
T Consensus       258 ~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg  294 (396)
T 3c5m_A          258 FKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDG  294 (396)
T ss_dssp             ETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSS
T ss_pred             CCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCC
Confidence            3     4499999988875443322 12 33 88988 75

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.81  E-value=2.8e-17  Score=135.07  Aligned_cols=202  Identities=16%  Similarity=0.169  Sum_probs=156.2

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-eeeee---------ccccCCEEEEEECC-CCCEEEEEe-CCC
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEI---------QGHKDSVSSLAFSM-DGQLLASGG-LDG  129 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~dg  129 (290)
                      ++-.....++++| ++.++++...++.|++|+..... .+..+         ..+......++++| ++..+++.+ .++
T Consensus        88 ~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~  166 (329)
T 3fvz_A           88 NLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS  166 (329)
T ss_dssp             TTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred             CccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence            3445788999999 66788888889999999986542 34444         23445689999999 788777776 689


Q ss_pred             cEEEEcCCCCceEEEEecCC----------CCEEEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeee--cCCCCeEE
Q 022910          130 LVQIWDPSSGNLKCTLEGPG----------GGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTC  196 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~----------~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~  196 (290)
                      .|++|+ .+++.+..+....          .....++++|+ +.++++...++.|++|+..+++.+..+.  .+...+..
T Consensus       167 ~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~  245 (329)
T 3fvz_A          167 RIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA  245 (329)
T ss_dssp             EEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred             eEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence            999999 5677776664322          23889999998 7777777788999999999888887774  35667889


Q ss_pred             EEEcCCCCEEEEE-------eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          197 GDFTPDGKTICTG-------SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       197 ~~~~~~~~~l~~~-------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      ++|+| +..+++.       ..+..|++|++.+++.+..+.....+...+..++++|+|.++++...+++|++|++.
T Consensus       246 ~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          246 ISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             eeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            99999 3333332       334589999999999888875333366778999999999888888889999999975

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=1e-16  Score=128.92  Aligned_cols=201  Identities=13%  Similarity=0.163  Sum_probs=151.5

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecC-CCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910           62 GHSDEVYSVACSPTDATLVATGGG-DDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      +|...+.++++.+.++.++++... ++.|++|+ .+++.+..+. .+...+.+++++|+++.+++...++.|.+|+.. +
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g  151 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-G  151 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-C
Confidence            355678999994327777776643 78999999 5566666554 244578999999999988887778999999964 5


Q ss_pred             ceEEEEe--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC--CCCeEEEEEcCCCCEEEEEeCCC-e
Q 022910          140 NLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDA-T  214 (290)
Q Consensus       140 ~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg-~  214 (290)
                      +.+..+.  .+...+..++++++++++++...++.|++|+.. ++.+..+...  ...+..++++|+|+++++...++ .
T Consensus       152 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~  230 (286)
T 1q7f_A          152 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN  230 (286)
T ss_dssp             CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred             CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE
Confidence            5555554  344568999999999988887888999999974 4555555433  35789999999999888887776 9


Q ss_pred             EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                      |++|+. +++.+..+.... ....+..++++|+|+++++ +.+++|++|++...
T Consensus       231 i~~~~~-~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          231 LTIFTQ-DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEECT-TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEECC-CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            999996 456666665422 2335789999999987776 57999999998654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.80  E-value=4.3e-17  Score=129.85  Aligned_cols=220  Identities=9%  Similarity=-0.016  Sum_probs=155.5

Q ss_pred             CEEEEEECCCCCcEEE-EecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE
Q 022910           66 EVYSVACSPTDATLVA-TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (290)
                      ...++++.+ ++.+++ +...++.|.+|+..+.........+...+.++++.++++.+++.. ++.|.+|+.........
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee
Confidence            778999999 666777 557788999999766543332223335678899999998666655 88999999876554322


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe
Q 022910          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE  224 (290)
Q Consensus       145 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  224 (290)
                      .......+..++++++++++++...++.|.+|+..+.............+.+++++|+++++++...++.|.+|+.....
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence            22233568999999999988877778899999876554333222333467889999999977777778899999988765


Q ss_pred             eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .......   ....+..++++++|.++++...++.|.+|+............+...+.+++++|+|
T Consensus       183 ~~~~~~~---~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g  245 (270)
T 1rwi_B          183 QVVLPFT---DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR  245 (270)
T ss_dssp             EEECCCS---SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC
T ss_pred             eEeeccc---CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC
Confidence            4332221   23668899999999888777778899999987655433222333578999999876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=1.7e-17  Score=137.14  Aligned_cols=203  Identities=15%  Similarity=0.210  Sum_probs=142.4

Q ss_pred             cCEEEEEECCCCCcEEEEecCC---C--cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC-----------
Q 022910           65 DEVYSVACSPTDATLVATGGGD---D--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-----------  128 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------  128 (290)
                      ..+..++|+| ++..|+.++.+   +  .|.+|++.+++.......+ . +..++|+|++++|+.++.+           
T Consensus        59 ~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~  135 (347)
T 2gop_A           59 ENATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFED  135 (347)
T ss_dssp             ESCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred             ccCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence            5688999999 55555555432   3  4788888887765544433 3 9999999999998888642           


Q ss_pred             ----------------CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCC---------eEEEEECCcccE
Q 022910          129 ----------------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS---------TVWMWNADRAAY  183 (290)
Q Consensus       129 ----------------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~  183 (290)
                                      ..|++|++.+++.+..+.. . .+..+.|+|++ +++++..++         .|++++  +++.
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~  210 (347)
T 2gop_A          136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE  210 (347)
T ss_dssp             -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE
T ss_pred             ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce
Confidence                            5799999998877445544 3 68899999999 777775532         455555  4443


Q ss_pred             EEeeecCCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEcCCCCeeeEEEeCCCCcccCeEE-EEEcCCCCEEEEE
Q 022910          184 LNMFSGHGSSVTCGDFTPDGKTICTGSDD--------ATLRVWNPKSGENIHVIRGHPYHTEGLTC-LTISADSTLALSG  254 (290)
Q Consensus       184 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~  254 (290)
                       ..+..+ ..+..+  +|+|++|+.++.+        ..|.+||  +++.......   +...+.. +.|+ ++ +++++
T Consensus       211 -~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~~~~~~~~~~~s-dg-~~~~~  279 (347)
T 2gop_A          211 -EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE---VDRGVGQAKIKD-GK-VYFTL  279 (347)
T ss_dssp             -EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT---CCSEEEEEEEET-TE-EEEEE
T ss_pred             -EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc---CCcccCCccEEc-Cc-EEEEE
Confidence             333334 455544  9999988877644        4788888  5543322222   4566775 8999 88 89999


Q ss_pred             eCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          255 SKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       255 ~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      +.++.+++| +.+++... +..+.+.|.+++|+|
T Consensus       280 ~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          280 FEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE  311 (347)
T ss_dssp             EETTEEEEE-EESSSEEE-EECSSSEEEEEEESS
T ss_pred             ecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC
Confidence            999999999 87776644 444577899999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.79  E-value=2.5e-18  Score=144.45  Aligned_cols=224  Identities=14%  Similarity=0.079  Sum_probs=152.0

Q ss_pred             eeeccCCcCE-EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEE-------------------EEECC
Q 022910           58 HIFSGHSDEV-YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS-------------------LAFSM  117 (290)
Q Consensus        58 ~~~~~h~~~v-~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~-------------------~~~~~  117 (290)
                      ..+..+...+ ..+.|+| ++..|+.++.++.|++|++.+++.......+......                   +.|+|
T Consensus        73 ~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp  151 (396)
T 3c5m_A           73 VQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP  151 (396)
T ss_dssp             EECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred             EEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC
Confidence            3343333333 3478999 6777777777889999999887765554433332222                   35677


Q ss_pred             CCCEEEEE-----eCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEeeCC------CeEEEEECCcccEEE
Q 022910          118 DGQLLASG-----GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSED------STVWMWNADRAAYLN  185 (290)
Q Consensus       118 ~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~  185 (290)
                      ++++++.+     ..+..|++||+.+++..... .+...+..+.|+| ++..|+..+.+      ..|.+|++..++...
T Consensus       152 dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~  230 (396)
T 3c5m_A          152 LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK  230 (396)
T ss_dssp             CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE
T ss_pred             CCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE
Confidence            77766654     35678999999988766554 4556789999999 78877766543      468999987665333


Q ss_pred             eeecC-CCCeEEEEEcCCCCEEEEEeCC-----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEe---
Q 022910          186 MFSGH-GSSVTCGDFTPDGKTICTGSDD-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGS---  255 (290)
Q Consensus       186 ~~~~~-~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~---  255 (290)
                      ..... ...+..++|+|+|++|+.++.+     +.|++||+.+++.......    . ... +.|+| +|++|++++   
T Consensus       231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----~-~~~-~~~s~~dg~~l~~~~~~~  304 (396)
T 3c5m_A          231 IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM----P-PCS-HLMSNFDGSLMVGDGCDA  304 (396)
T ss_dssp             SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC----C-SEE-EEEECSSSSEEEEEECCC
T ss_pred             eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC----C-CCC-CCccCCCCceEEEecCCc
Confidence            33321 2357889999999987766543     4599999988765443321    1 123 88999 999888765   


Q ss_pred             -------------CCCcEEEEEcCCCcEEEEEccCCC-----------cEEEEEEecCC
Q 022910          256 -------------KDGSVHMVNITTGKVVSSLVSHTD-----------SIECIGFSRSE  290 (290)
Q Consensus       256 -------------~dg~i~~wd~~~~~~~~~~~~~~~-----------~v~~i~~s~d~  290 (290)
                                   .++.|++||+.+++. ..+..+..           .+..++|+|||
T Consensus       305 p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg  362 (396)
T 3c5m_A          305 PVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPND  362 (396)
T ss_dssp             ----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred             ceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCC
Confidence                         347899999988764 34444443           25677899886

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=7.4e-17  Score=132.58  Aligned_cols=217  Identities=11%  Similarity=0.140  Sum_probs=158.6

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (290)
                      ..|.+++|++ +...++..+.++.++.|   .++....+..+...+.+++|++++++++++..++.|.+|+..+++....
T Consensus         6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~   81 (333)
T 2dg1_A            6 QDLPTLFYSG-KSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP   81 (333)
T ss_dssp             CCCCBCCSCG-GGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred             cccceeeecC-CccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence            4577888998 55666666778899999   3455566666777789999999999888888899999999998876655


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEeeCC----CeEEEEECCcccEEEeee--cCCCCeEEEEEcCCCCEEEEEeC------C
Q 022910          145 LEGPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSD------D  212 (290)
Q Consensus       145 ~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~------d  212 (290)
                      ...+...+.+++++|+++++++...+    +.|.+||..++.....+.  .....+..++++|+++++++...      .
T Consensus        82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  161 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL  161 (333)
T ss_dssp             EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred             eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence            54556779999999999988877766    689999998876543332  24457899999999987776654      3


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCC-CcEEEE--------EccCCCcEE
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGSVHMVNITT-GKVVSS--------LVSHTDSIE  282 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~-~~~~~~--------~~~~~~~v~  282 (290)
                      +.|..|+..+++......    ....+..++|+|++++|+ +.+.++.|++|++.+ ++.+..        +.++ ..+.
T Consensus       162 ~~l~~~~~~~~~~~~~~~----~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~  236 (333)
T 2dg1_A          162 GGVYYVSPDFRTVTPIIQ----NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPD  236 (333)
T ss_dssp             EEEEEECTTSCCEEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEE
T ss_pred             ceEEEEeCCCCEEEEeec----CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCC
Confidence            678888876655433222    334578999999998654 445678999999964 332221        1222 4678


Q ss_pred             EEEEecCC
Q 022910          283 CIGFSRSE  290 (290)
Q Consensus       283 ~i~~s~d~  290 (290)
                      .++++++|
T Consensus       237 ~i~~d~~G  244 (333)
T 2dg1_A          237 SCCIDSDD  244 (333)
T ss_dssp             EEEEBTTC
T ss_pred             ceEECCCC
Confidence            88888875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.78  E-value=1.7e-15  Score=122.59  Aligned_cols=225  Identities=12%  Similarity=0.078  Sum_probs=159.9

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS  138 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  138 (290)
                      .+..+..-.-+..|+|.++.++++....+.|..|+..+++.. .+. ....+.+++++++++++++ . ++.|.+||..+
T Consensus         7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~   82 (297)
T 3g4e_A            7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE   82 (297)
T ss_dssp             EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred             EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence            344445556789999977888888888999999999877642 233 4567999999999995554 4 56799999988


Q ss_pred             CceEEEEecC----CCCEEEEEEcCCCCEEEEeeC-----------CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC
Q 022910          139 GNLKCTLEGP----GGGVEWVSWHPRGHIVLAGSE-----------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG  203 (290)
Q Consensus       139 ~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  203 (290)
                      ++........    ...+..++++|+|+++++...           .+.|+.++.. ++... +.........++|+|++
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg  160 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDH  160 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTS
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCC
Confidence            7654333321    234788999999997665432           2344444443 33322 22233456899999999


Q ss_pred             CEEE-EEeCCCeEEEEcC--CCCeee--EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910          204 KTIC-TGSDDATLRVWNP--KSGENI--HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       204 ~~l~-~~~~dg~i~i~d~--~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  278 (290)
                      +.|+ +.+..+.|.+|++  .++...  ..+.........+..++++++|+++++....+.|.+|+..+++.+..+..+.
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~  240 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV  240 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence            8775 4556789999986  455431  2222221134567899999999888888778899999999999999998877


Q ss_pred             CcEEEEEEe-cC
Q 022910          279 DSIECIGFS-RS  289 (290)
Q Consensus       279 ~~v~~i~~s-~d  289 (290)
                      ..+++++|. |+
T Consensus       241 ~~~t~~~f~g~d  252 (297)
T 3g4e_A          241 DKTTSCCFGGKN  252 (297)
T ss_dssp             SBEEEEEEESGG
T ss_pred             CCceEEEEeCCC
Confidence            889999998 65

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.77  E-value=2.8e-17  Score=148.27  Aligned_cols=222  Identities=12%  Similarity=0.068  Sum_probs=153.9

Q ss_pred             cCCcCEEEEEECCCCCcEEE-----EecCCCcEEEEEccCCeee-ee-eccccCCEEEEEECCCCCEEEEEeCCCc----
Q 022910           62 GHSDEVYSVACSPTDATLVA-----TGGGDDKGFFWRINQGDWA-SE-IQGHKDSVSSLAFSMDGQLLASGGLDGL----  130 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~-----~~~~dg~i~iw~~~~~~~~-~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~----  130 (290)
                      +|...+.+++|+| ++++||     .|+.+..|++||+.+++.+ .. +..  .....++|+|+|+.|+.++.+..    
T Consensus       118 ~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          118 DGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             CCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCc
Confidence            4666799999999 666665     3344568999999998765 21 211  11267899999999999988776    


Q ss_pred             ---------EEEEcCCCCce--EEEEe--cCCCCEEEEEEcCCCCEEEEeeCCC----eEEEEECCcccEEEeeecCCCC
Q 022910          131 ---------VQIWDPSSGNL--KCTLE--GPGGGVEWVSWHPRGHIVLAGSEDS----TVWMWNADRAAYLNMFSGHGSS  193 (290)
Q Consensus       131 ---------i~i~d~~~~~~--~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~  193 (290)
                               |++|++.++..  ...+.  .+...+..+.|+|+|++|++++.++    .|++|+..+++. ..+..+...
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~  273 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGA  273 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSC
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCc
Confidence                     99999988762  23333  3445788999999999988887666    677787655543 344445555


Q ss_pred             eEEEEEcCCCCEEEEEe---CCCeEEEEcCCCCee--eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-C
Q 022910          194 VTCGDFTPDGKTICTGS---DDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-T  267 (290)
Q Consensus       194 i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-~  267 (290)
                      +....+ +++.+++.+.   .++.|.+||+.++..  ...+..+. ....+..++|+ ++.++++...++..++|.+. +
T Consensus       274 ~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~  350 (695)
T 2bkl_A          274 KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED-SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK  350 (695)
T ss_dssp             CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC-SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence            666666 5566444443   258999999987653  23333221 24457888888 67888888899988887654 4


Q ss_pred             CcEEEEEccC-CCcEEEEEEecCC
Q 022910          268 GKVVSSLVSH-TDSIECIGFSRSE  290 (290)
Q Consensus       268 ~~~~~~~~~~-~~~v~~i~~s~d~  290 (290)
                      ++.+..+..+ .+.|..++++|++
T Consensus       351 g~~~~~l~~~~~~~v~~~~~s~d~  374 (695)
T 2bkl_A          351 GKPVRTVQLPGVGAASNLMGLEDL  374 (695)
T ss_dssp             CCEEEECCCSSSSEECCCBSCTTC
T ss_pred             CCeeEEecCCCCeEEEEeecCCCC
Confidence            6677777655 5677888888764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.77  E-value=1.4e-14  Score=116.82  Aligned_cols=222  Identities=12%  Similarity=0.122  Sum_probs=163.0

Q ss_pred             eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee-eccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC
Q 022910           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS  138 (290)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  138 (290)
                      +..+...+.++++.+ ++.++++...++.|.+|+.. ++.... +..+...+.++++.+++..+++...++.|..|+.. 
T Consensus        10 ~~~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           10 LTNQDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             CCSSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCCcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            445567899999999 66777776667899999988 543332 22345678999999999988777768889999986 


Q ss_pred             CceEEEEe--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEe-eecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910          139 GNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       139 ~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                      ++. ..+.  .....+..+++.++++++++...++.|.+|+. +++.... .......+..+++.++++++++....+.|
T Consensus        87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  164 (299)
T 2z2n_A           87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI  164 (299)
T ss_dssp             SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence            433 3333  24457899999999988888777889999998 5543322 22345678999999999888877778899


Q ss_pred             EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE-EccCCCcEEEEEEecCC
Q 022910          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS-LVSHTDSIECIGFSRSE  290 (290)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~i~~s~d~  290 (290)
                      .+||. +++... +... .....+..++++++++++++....+.|.+|+. +++.... +..+...+.+++++++|
T Consensus       165 ~~~~~-~g~~~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g  236 (299)
T 2z2n_A          165 GRITE-SGDITE-FKIP-TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGI  236 (299)
T ss_dssp             EEECT-TCCEEE-EECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT
T ss_pred             EEEcC-CCcEEE-eeCC-CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCC
Confidence            99999 665433 2211 13456889999999998777777889999998 6664432 23345678999998875

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=2.5e-16  Score=131.04  Aligned_cols=200  Identities=11%  Similarity=0.129  Sum_probs=138.4

Q ss_pred             CCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC----------CCcEEEEcCCCCceEEEEecC------
Q 022910           85 GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL----------DGLVQIWDPSSGNLKCTLEGP------  148 (290)
Q Consensus        85 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~------  148 (290)
                      .++.|.+||..+++.+..+..+..+  .++|+|+++++++++.          ++.|.+||+.+++.+..+...      
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            3679999999999988888766655  8999999999998863          578999999999988887643      


Q ss_pred             CCCEEEEEEcCCCCEEEEeeC--CCeEEEEECCcccEEEe-eecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEcC----
Q 022910          149 GGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNP----  220 (290)
Q Consensus       149 ~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~----  220 (290)
                      ......++++|++++|+++..  ++.|.+||+.+++.+.. +....  ...+.+.|.+ ..+++.+.||.+.+|+.    
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g  184 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDG  184 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence            234677999999999998874  57899999999988777 54211  1122334432 33344444444444443    


Q ss_pred             --------------------------------------------CCCee--eEEEeCCC-------CcccCeEEEEEcCC
Q 022910          221 --------------------------------------------KSGEN--IHVIRGHP-------YHTEGLTCLTISAD  247 (290)
Q Consensus       221 --------------------------------------------~~~~~--~~~~~~~~-------~~~~~v~~~~~~~~  247 (290)
                                                                  .....  ...+....       ........++|+|+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d  264 (361)
T 2oiz_A          185 KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA  264 (361)
T ss_dssp             SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred             cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence                                                        22211  00110000       00011112688999


Q ss_pred             CCEEEEEeC-----------CCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          248 STLALSGSK-----------DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       248 ~~~l~~~~~-----------dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ++.++++..           .+.|.+||+.+++.+.++..+.  +.+|+|+|||
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg  316 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQR  316 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTT
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCC
Confidence            887777643           3489999999999999999876  9999999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.76  E-value=1.8e-17  Score=150.47  Aligned_cols=176  Identities=12%  Similarity=0.131  Sum_probs=134.8

Q ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCC-----EEEEEEcCCCCEEEEeeCC---------CeEE
Q 022910          109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-----VEWVSWHPRGHIVLAGSED---------STVW  174 (290)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----i~~i~~~~~~~~l~~~~~d---------g~i~  174 (290)
                      ....+.|+|++++++++  ++.|++|++.+++....+..+...     ...+.|||+|++|++++.+         +.++
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            45679999999988886  899999999999988777766532     2347899999999998875         6678


Q ss_pred             EEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCccc-----------------
Q 022910          175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE-----------------  237 (290)
Q Consensus       175 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----------------  237 (290)
                      +||+.+++.. .+..+...+...+|||+|+.|+.+. ++.|++|++.++...+.....  +..                 
T Consensus        96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g--~~~~~~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A           96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTG--KEDIIYNGITDWVYEEEVFS  171 (740)
T ss_dssp             EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCC--BTTTEEESBCCHHHHHHTSS
T ss_pred             EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCC--CccceecCcccccccchhcC
Confidence            9999998754 4566778899999999999998875 689999999887754322111  111                 


Q ss_pred             CeEEEEEcCCCCEEEEEeCCC------------------------------------cEEEEEcCC---Cc--EEEEEc-
Q 022910          238 GLTCLTISADSTLALSGSKDG------------------------------------SVHMVNITT---GK--VVSSLV-  275 (290)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg------------------------------------~i~~wd~~~---~~--~~~~~~-  275 (290)
                      ....+.|||||++||.++.|.                                    .|++||+.+   ++  ....+. 
T Consensus       172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence            123589999999999875321                                    588999988   73  233343 


Q ss_pred             -----cCCCcEEEEEEecCC
Q 022910          276 -----SHTDSIECIGFSRSE  290 (290)
Q Consensus       276 -----~~~~~v~~i~~s~d~  290 (290)
                           +|...+..++|||||
T Consensus       252 ~~~~~~~~~~~~~~~wspdg  271 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQE  271 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETT
T ss_pred             CccCCCCCeEEEEEEEeCCC
Confidence                 377789999999997

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.76  E-value=6.3e-16  Score=126.93  Aligned_cols=215  Identities=12%  Similarity=0.034  Sum_probs=161.0

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (290)
                      .....+++.  +++++++...++.|.+||..+++.+.++. .......++++++++.+++...++.|.+||+.+++....
T Consensus        44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~  120 (328)
T 3dsm_A           44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY  120 (328)
T ss_dssp             SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred             ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            345677774  55677777778999999999999888885 346688999988885444444789999999999988877


Q ss_pred             EecCC-----CCEEEEEEcCCCCEEEEee--CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC-----
Q 022910          145 LEGPG-----GGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-----  212 (290)
Q Consensus       145 ~~~~~-----~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----  212 (290)
                      +....     .....+++  ++..++++.  .++.|.++|+.+++.+..+.. ......++++|+|++++++..+     
T Consensus       121 i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~  197 (328)
T 3dsm_A          121 IECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSP  197 (328)
T ss_dssp             EECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCS
T ss_pred             EEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCc
Confidence            76433     13556777  344455544  488999999999988877764 3445788999999877776654     


Q ss_pred             -----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE--EccCCCcEEEEE
Q 022910          213 -----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS--LVSHTDSIECIG  285 (290)
Q Consensus       213 -----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~--~~~~~~~v~~i~  285 (290)
                           +.|.+||..+++....+...  .......++|+|++++|+++..  .|.+||+.+++....  +........+|+
T Consensus       198 ~~~~~~~v~~id~~t~~v~~~~~~~--~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~  273 (328)
T 3dsm_A          198 YGYEAPSLYRIDAETFTVEKQFKFK--LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLT  273 (328)
T ss_dssp             SCBCCCEEEEEETTTTEEEEEEECC--TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEE
T ss_pred             cccCCceEEEEECCCCeEEEEEecC--CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEE
Confidence                 78999999999877666532  1346889999999999988765  899999998876421  122245788999


Q ss_pred             EecC
Q 022910          286 FSRS  289 (290)
Q Consensus       286 ~s~d  289 (290)
                      ++|+
T Consensus       274 vdp~  277 (328)
T 3dsm_A          274 VNPN  277 (328)
T ss_dssp             ECTT
T ss_pred             EcCC
Confidence            9984

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.75  E-value=2.9e-16  Score=129.70  Aligned_cols=202  Identities=11%  Similarity=0.146  Sum_probs=140.7

Q ss_pred             cCEEEEEECCCCCcEEEEe--------cCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC---C--cE
Q 022910           65 DEVYSVACSPTDATLVATG--------GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---G--LV  131 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~--------~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g--~i  131 (290)
                      ..+..+++  ++..++++.        ..++.|.+|++.+++... +    ..+..++|+|+|++|+.++.+   +  .|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            35667777  355544442        125679999998876433 3    467889999999999887754   2  48


Q ss_pred             EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC---------------------------CeEEEEECCcccEE
Q 022910          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---------------------------STVWMWNADRAAYL  184 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~  184 (290)
                      .+|++.+++.......+ . +..++|+|+++.|+.++.+                           ..|++|++.+++.+
T Consensus        88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            88898888766555444 3 9999999999988887642                           57999999988764


Q ss_pred             EeeecCCCCeEEEEEcCCCCEEEEEeCCC---------eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe
Q 022910          185 NMFSGHGSSVTCGDFTPDGKTICTGSDDA---------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS  255 (290)
Q Consensus       185 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (290)
                      ..+.. . .+..+.|+|+| +++++..++         .|.++|  +++. ..+..   + ..+..+  +|+|++|+.++
T Consensus       166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~---~-~~~~~~--spdg~~l~~~~  233 (347)
T 2gop_A          166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFE---K-VSFYAV--DSDGERILLYG  233 (347)
T ss_dssp             EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEE---E-ESEEEE--EECSSCEEEEE
T ss_pred             eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEecc---C-cceeeE--CCCCCEEEEEE
Confidence            55554 3 78899999999 777776542         455556  5543 33332   2 344443  89999888777


Q ss_pred             CC--------CcEEEEEcCCCcEEEEEccCCCcEEE-EEEecCC
Q 022910          256 KD--------GSVHMVNITTGKVVSSLVSHTDSIEC-IGFSRSE  290 (290)
Q Consensus       256 ~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~-i~~s~d~  290 (290)
                      .+        ..|++||  +++.......+...+.. +.|+ ||
T Consensus       234 ~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg  274 (347)
T 2gop_A          234 KPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK  274 (347)
T ss_dssp             CCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE
T ss_pred             ccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc
Confidence            54        3688888  66655545566778886 8887 64

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.75  E-value=2e-15  Score=122.74  Aligned_cols=227  Identities=8%  Similarity=0.074  Sum_probs=159.6

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEE-------ecCCCcEEEEEccCCeeeeeec----cccCCEEEEEECCC-CCEEEEEe
Q 022910           59 IFSGHSDEVYSVACSPTDATLVAT-------GGGDDKGFFWRINQGDWASEIQ----GHKDSVSSLAFSMD-GQLLASGG  126 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~l~~~~  126 (290)
                      .+...-....+++|.+ ++.++++       +..++.|.+|+..+++......    ++...+.+++++++ ++++++. 
T Consensus        12 ~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-   89 (314)
T 1pjx_A           12 KVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-   89 (314)
T ss_dssp             EEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-
T ss_pred             hhhccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-
Confidence            3444555678999998 6677777       5678899999988776543221    25567899999999 6544444 


Q ss_pred             CCCcEEEEcCCCCceEEE-Eec----CCCCEEEEEEcCCCCEEEEeeCC---------------CeEEEEECCcccEEEe
Q 022910          127 LDGLVQIWDPSSGNLKCT-LEG----PGGGVEWVSWHPRGHIVLAGSED---------------STVWMWNADRAAYLNM  186 (290)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~-~~~----~~~~i~~i~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~  186 (290)
                      ..+.|.+|+.. ++.... ...    ....+.+++++++++++++...+               +.|..|+.. ++....
T Consensus        90 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~  167 (314)
T 1pjx_A           90 MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV  167 (314)
T ss_dssp             TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred             CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence            44579999988 665433 221    12347899999999888777654               568888766 544333


Q ss_pred             eecCCCCeEEEEEc----CCCCEEEEE-eCCCeEEEEcCC-CCeee--EEEeCCCCcc-cCeEEEEEcCCCCEEEEEeCC
Q 022910          187 FSGHGSSVTCGDFT----PDGKTICTG-SDDATLRVWNPK-SGENI--HVIRGHPYHT-EGLTCLTISADSTLALSGSKD  257 (290)
Q Consensus       187 ~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~--~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d  257 (290)
                      . .+......++|+    |+++.|+++ ..++.|.+|++. +++..  ..+.....+. ..+..++++++|+++++...+
T Consensus       168 ~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~  246 (314)
T 1pjx_A          168 D-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             E-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             c-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence            2 233456889999    998766555 567899999976 44321  1222211122 557889999999988888788


Q ss_pred             CcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       258 g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +.|.+|+..+++.+..+..+...+.+++|+|+|
T Consensus       247 ~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg  279 (314)
T 1pjx_A          247 SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQT  279 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECSSSCEEEEEECTTS
T ss_pred             CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCC
Confidence            999999998788777777777889999999875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.74  E-value=3.8e-15  Score=119.14  Aligned_cols=226  Identities=14%  Similarity=0.084  Sum_probs=173.5

Q ss_pred             CCCceeeeccCC-cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccc-cCCEEEEEECCCCCEEEEEeC-CC
Q 022910           53 PDDSTHIFSGHS-DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-KDSVSSLAFSMDGQLLASGGL-DG  129 (290)
Q Consensus        53 ~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-dg  129 (290)
                      ..+.+..+..+. ..+.++++.| ++++|++  .++.|..||. +++.+..+..+ ...+.++.+.++|+.+++.+. .+
T Consensus        24 tG~~~w~~~~~~~~~~~~~~~~p-dG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~   99 (276)
T 3no2_A           24 TKEIVWEYPLEKGWECNSVAATK-AGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPS   99 (276)
T ss_dssp             TTEEEEEEECCTTCCCCEEEECT-TSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred             CCeEEEEeCCCccCCCcCeEECC-CCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCC
Confidence            466677777766 5789999999 6777773  4688999999 88888888764 357889999999999999887 77


Q ss_pred             cEEEEcCCCCceEEEEecC------CCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC
Q 022910          130 LVQIWDPSSGNLKCTLEGP------GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG  203 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  203 (290)
                      .|..++. +++.+..+...      ......+++.++++++++...++.|..||.. ++.+.++... ..+.++.+.+++
T Consensus       100 ~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g  176 (276)
T 3no2_A          100 TILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNG  176 (276)
T ss_dssp             EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTS
T ss_pred             EEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCC
Confidence            8888885 67777666522      1234556788999999999999999999998 9888888754 445667888999


Q ss_pred             CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC---cccCeEEEEEcCCCCEEEEEeCC--------CcEEEEEc-CCCcEE
Q 022910          204 KTICTGSDDATLRVWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSKD--------GSVHMVNI-TTGKVV  271 (290)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~wd~-~~~~~~  271 (290)
                      +++++++.++.|..+|..+++.+..+.....   ....+..++..++|+++++....        +..+++.+ .+++.+
T Consensus       177 ~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~  256 (276)
T 3no2_A          177 DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVV  256 (276)
T ss_dssp             CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEE
T ss_pred             CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEE
Confidence            9999999888999999999999888864211   12337888999999998887421        23356666 589999


Q ss_pred             EEEccCC--CcEEEEE
Q 022910          272 SSLVSHT--DSIECIG  285 (290)
Q Consensus       272 ~~~~~~~--~~v~~i~  285 (290)
                      .++..+.  +.|++++
T Consensus       257 W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          257 WQLNDKVKFGMISTIC  272 (276)
T ss_dssp             EEECCTTTSCCCCEEE
T ss_pred             EEecCcccccceeeee
Confidence            9987653  4566654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=2.3e-15  Score=123.57  Aligned_cols=223  Identities=9%  Similarity=-0.014  Sum_probs=162.3

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecccc-----CCEEEEEECCCCCEEEEEe--
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK-----DSVSSLAFSMDGQLLASGG--  126 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~--  126 (290)
                      .+.+..+. .......+++++ ++.++++...++.|.+||..+++....+....     .....+++  ++..++++.  
T Consensus        74 ~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~  149 (328)
T 3dsm_A           74 FKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS  149 (328)
T ss_dssp             CCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT
T ss_pred             cEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC
Confidence            34445553 346788999988 55666666578999999999998877665332     14456777  455555554  


Q ss_pred             CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC----------CeEEEEECCcccEEEeeecC-CCCeE
Q 022910          127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED----------STVWMWNADRAAYLNMFSGH-GSSVT  195 (290)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~-~~~i~  195 (290)
                      .++.|.++|+.+++.+..+.... ....++++|++++++++..+          +.|.++|..+++....+... ...+.
T Consensus       150 ~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~  228 (328)
T 3dsm_A          150 YQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPS  228 (328)
T ss_dssp             TCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCE
T ss_pred             CCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCce
Confidence            48899999999999888776533 35789999999977777654          78999999998877766532 34689


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEE----eCCCcEEEEEcCCCcE
Q 022910          196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSG----SKDGSVHMVNITTGKV  270 (290)
Q Consensus       196 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~dg~i~~wd~~~~~~  270 (290)
                      .++|+|++++|+++..  .|.+||+.+++.... ............++++| ++.++++.    ..++.|.+|+.. ++.
T Consensus       229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~-~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~  304 (328)
T 3dsm_A          229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVR-PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL  304 (328)
T ss_dssp             EEEECTTSCEEEEESS--SEEEEETTCSSCCSS-CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred             eEEEecCCCEEEEEcc--EEEEEECCCCceeee-eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence            9999999999988765  899999988775311 11111145688999999 55666665    568899999998 999


Q ss_pred             EEEEccCCCcEEEEEE
Q 022910          271 VSSLVSHTDSIECIGF  286 (290)
Q Consensus       271 ~~~~~~~~~~v~~i~~  286 (290)
                      +.++.. ......++|
T Consensus       305 ~~~i~~-G~~P~~~~~  319 (328)
T 3dsm_A          305 IDEFYV-GIIPGAFCW  319 (328)
T ss_dssp             EEEEEE-EESEEEEEE
T ss_pred             EEEEEe-ccCcceEEE
Confidence            998875 334556655

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.74  E-value=1.4e-15  Score=121.00  Aligned_cols=201  Identities=9%  Similarity=-0.006  Sum_probs=148.7

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      ...+.++++.+ ++.++++.. ++.|.+|+................+..+++.++++.+++...++.|.+|+..+.....
T Consensus        66 ~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~  143 (270)
T 1rwi_B           66 LYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV  143 (270)
T ss_dssp             CCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE
T ss_pred             cCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe
Confidence            35678899999 566666665 8899999987654332222233578999999999977777778899999876655433


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910          144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (290)
Q Consensus       144 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  223 (290)
                      ........+..++++++++++++...++.|.+|+................+.+|+++++|.++++...++.|.+|+....
T Consensus       144 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          144 LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            32233345788999999997777777889999999877654433333467899999999987777777889999998765


Q ss_pred             eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 022910          224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (290)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  269 (290)
                      ... ....  .+...+.+++++++|+++++...++.|++|++...+
T Consensus       224 ~~~-~~~~--~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          224 TST-VLPF--TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CCE-ECCC--CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             cce-eecc--CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            432 2221  123568999999999988888899999999987654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.74  E-value=6.9e-14  Score=112.67  Aligned_cols=218  Identities=10%  Similarity=0.028  Sum_probs=158.7

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee-eeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (290)
                      +...+.++++.+ ++.++++...++.|..|+.. ++. ...+......+..+++.+++.++++...++.|.+|+. +++.
T Consensus        55 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~  131 (299)
T 2z2n_A           55 PDAKVMCLTISS-DGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI  131 (299)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred             ccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence            456789999999 66777777768889999976 332 2222234557899999999988887777889999998 5554


Q ss_pred             EEE-EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEe-eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910          142 KCT-LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (290)
Q Consensus       142 ~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  219 (290)
                      ... .......+..+++.++++++++....+.|..|+. +++.... .......+..+++.++++++++....+.|.+|+
T Consensus       132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  210 (299)
T 2z2n_A          132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT  210 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence            432 2224456899999999988887777889999999 6654432 233455688999999999777776788999999


Q ss_pred             CCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE--ccCCCcEEEEEEecCC
Q 022910          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL--VSHTDSIECIGFSRSE  290 (290)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~v~~i~~s~d~  290 (290)
                      . ++... .+... .....+.+++++++|+++++...++.|.+|+. +++. ..+  ..+...+.++++ ++|
T Consensus       211 ~-~g~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g  277 (299)
T 2z2n_A          211 T-SGEIT-EFKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGE  277 (299)
T ss_dssp             T-TCCEE-EEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSS
T ss_pred             C-CCcEE-EEECC-CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCC
Confidence            9 66543 33221 14467899999999987777667889999998 4543 333  344567888888 664

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.73  E-value=9.9e-15  Score=127.72  Aligned_cols=212  Identities=12%  Similarity=0.059  Sum_probs=157.3

Q ss_pred             CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC--CCceEEEEecCCCCEE
Q 022910           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS--SGNLKCTLEGPGGGVE  153 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~  153 (290)
                      +..++++...++.|.++|..+++.+..+... ..+..+.|+|+++++++++.++.|.+||+.  +++.+..+.... ...
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~  243 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EAR  243 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCc
Confidence            4567778888999999999999998888743 356799999999999999999999999996  888887777543 468


Q ss_pred             EEEEc----CCCCEEEEeeC-CCeEEEEECCcccEEEeeecC--------------------------------------
Q 022910          154 WVSWH----PRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGH--------------------------------------  190 (290)
Q Consensus       154 ~i~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~--------------------------------------  190 (290)
                      .++|+    |+|++++++.. .+.|.++|..+.+.+..+...                                      
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~  323 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  323 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence            89999    69998887765 589999999888776654311                                      


Q ss_pred             -----------------CCCeEEEEEcCCCCEEEEEe-CCCeEEEEcCCCCeeeEEEeC-CC-CcccCeEEEEEcCCC-C
Q 022910          191 -----------------GSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVIRG-HP-YHTEGLTCLTISADS-T  249 (290)
Q Consensus       191 -----------------~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~-~~~~~v~~~~~~~~~-~  249 (290)
                                       ......+.|+|++++|+++. .++.|.++|+.+++.+..+.. .. .|......+ ++|++ .
T Consensus       324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~  402 (567)
T 1qks_A          324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGP  402 (567)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEE
T ss_pred             EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCc
Confidence                             01123567999999887665 578999999999988777654 21 233222222 57874 4


Q ss_pred             EEEEEe-CCCcEEEEEcCC-------CcEEEEEccCCCcEEEEEEecCC
Q 022910          250 LALSGS-KDGSVHMVNITT-------GKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       250 ~l~~~~-~dg~i~~wd~~~-------~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .++++. .++.|.+++..+       .+.++++......-..|.++|++
T Consensus       403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~  451 (567)
T 1qks_A          403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS  451 (567)
T ss_dssp             EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC
T ss_pred             EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCC
Confidence            445553 468999999988       77889888654443446667764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=7.3e-15  Score=118.68  Aligned_cols=203  Identities=13%  Similarity=0.119  Sum_probs=147.7

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccc----cCCEEEEEECCCCCEEEEE----e--
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH----KDSVSSLAFSMDGQLLASG----G--  126 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~----~--  126 (290)
                      ...+..+...+.+++++| ++.++++...++.|.+|+..+++........    ...+..++++|+|+++++.    +  
T Consensus        61 ~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~  139 (296)
T 3e5z_A           61 LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDK  139 (296)
T ss_dssp             EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHC
T ss_pred             eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccc
Confidence            566677788899999999 6778877777789999999877654433211    2346789999999988873    2  


Q ss_pred             -----------CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC-cccE---EEeeecCC
Q 022910          127 -----------LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAY---LNMFSGHG  191 (290)
Q Consensus       127 -----------~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~  191 (290)
                                 ..+.|..++.. ++ ...+..+......++|+|+++.+++.+.++.|++|++. .++.   ...+..+.
T Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  217 (296)
T 3e5z_A          140 PEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEP  217 (296)
T ss_dssp             GGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSS
T ss_pred             ccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCC
Confidence                       13466666655 44 34445556678999999999988777788999999987 4443   23333345


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCcE
Q 022910          192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI-SADSTLALSGSKDGSVHMVNITTGKV  270 (290)
Q Consensus       192 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~  270 (290)
                      ..+..++++++|+++++.  ++.|.+|+.. ++.+..+..   +.. +++++| .|+++.|++++.+ .+..++..+.++
T Consensus       218 ~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~---~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          218 GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLT---PQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC---SSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC---CCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence            567789999999866665  7899999986 676666665   334 888999 5899988888876 466667766553

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.73  E-value=3.1e-16  Score=130.11  Aligned_cols=175  Identities=11%  Similarity=-0.003  Sum_probs=136.0

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---------eee-eeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------WAS-EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      +++.+++++ ...++++|+.+ .+++|++...+         ... ....+.. |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            689999999 66677788776 46669976543         111 1223556 999999  89999998 789999999


Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                      +.+.........+..++.++.+.+.  .+++++.+|.|.+|++..+....    +...|++++|+|.|  ++.|..||.|
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i  184 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence            9888766667777778888877654  38889999999999999877653    34589999999999  7889999999


Q ss_pred             EEEcCCCCee--eEEEeCCC------CcccCeEEEEEcCCCCEEEEE
Q 022910          216 RVWNPKSGEN--IHVIRGHP------YHTEGLTCLTISADSTLALSG  254 (290)
Q Consensus       216 ~i~d~~~~~~--~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~  254 (290)
                      ++|+...+..  ...+...+      .+...|.+++|.+++.+|++-
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            9999887774  45552211      256789999999999988874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.72  E-value=7.8e-14  Score=114.33  Aligned_cols=219  Identities=15%  Similarity=0.065  Sum_probs=154.6

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      ..-..+.+|+|+++.++++...++.|.+|+..+++... +. ....+.+++|+++++++++. .+ .|.+|+..+++...
T Consensus        48 ~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           48 MLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL  123 (326)
T ss_dssp             CSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred             CCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE
Confidence            33457889999667888888888999999998776432 32 34679999999999877654 34 49999998887543


Q ss_pred             EEecC----CCCEEEEEEcCCCCEEEEeeC------CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCC
Q 022910          144 TLEGP----GGGVEWVSWHPRGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDD  212 (290)
Q Consensus       144 ~~~~~----~~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d  212 (290)
                      .....    ...+..++++|+|+++++...      .+.|+.++  +++.. .+.........++|+|+++.|+.+ +.+
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence            33211    235889999999997665542      25666666  44433 232233456789999999877554 457


Q ss_pred             CeEEEEcCC--CC-ee--eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEe
Q 022910          213 ATLRVWNPK--SG-EN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS  287 (290)
Q Consensus       213 g~i~i~d~~--~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s  287 (290)
                      +.|.+|++.  ++ ..  ...+.........+..++++++|.++++...++.|.+|+. +++.+..+..+...+++++|+
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence            899999985  55 32  1222211112345678999999988877767789999998 688888888777789999998


Q ss_pred             -cCC
Q 022910          288 -RSE  290 (290)
Q Consensus       288 -~d~  290 (290)
                       |++
T Consensus       280 g~d~  283 (326)
T 2ghs_A          280 GPDA  283 (326)
T ss_dssp             STTS
T ss_pred             cCCC
Confidence             763

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.71  E-value=2.5e-14  Score=120.84  Aligned_cols=220  Identities=14%  Similarity=0.114  Sum_probs=156.0

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC--cEEEEcCCCCceE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLK  142 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~  142 (290)
                      .....|+|++ ++.++++...++.|++|+..++.......... ... ++|+++++.|+++..++  .|.+|+...+...
T Consensus       131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            4678999998 77788888888999999998877665554332 233 99999999998888766  7999988766554


Q ss_pred             EEE----ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEe----eecCCCCe-E-EEEEcCC-CCEEEEEeC
Q 022910          143 CTL----EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM----FSGHGSSV-T-CGDFTPD-GKTICTGSD  211 (290)
Q Consensus       143 ~~~----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~i-~-~~~~~~~-~~~l~~~~~  211 (290)
                      ..+    ......+.+++++|++..|+++..++.|+.|+..++.....    ..+....- . .++|+|+ +.++++-..
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            444    21445678899999655566677789999999987753322    22222222 3 8999995 555566667


Q ss_pred             CCeEEEEcCCCCeeeEEEeCCC------------CcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEEEccC-
Q 022910          212 DATLRVWNPKSGENIHVIRGHP------------YHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVVSSLVSH-  277 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~-  277 (290)
                      .+.|+.|+....  ...+.+..            ..-.....++++|+|+++++-+ .+++|+.|++.+++. .++.++ 
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~  364 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQV  364 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECT
T ss_pred             CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCC
Confidence            889999998643  23333211            0123478999999999888877 889999999877764 444443 


Q ss_pred             --------------CCcEEEEEEecCC
Q 022910          278 --------------TDSIECIGFSRSE  290 (290)
Q Consensus       278 --------------~~~v~~i~~s~d~  290 (290)
                                    -....+|+++|+|
T Consensus       365 ~~~g~~~g~~~~~~~~~P~giavd~~g  391 (409)
T 3hrp_A          365 DVASQIDGTPLEATFNYPYDICYDGEG  391 (409)
T ss_dssp             TCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred             CCCCcCCCChhceEeCCceEEEEcCCC
Confidence                          2458899998875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.71  E-value=4.2e-15  Score=134.99  Aligned_cols=221  Identities=13%  Similarity=0.027  Sum_probs=150.6

Q ss_pred             CCcCEEEEEECCCCCcEEEEecC-C----CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc-------
Q 022910           63 HSDEVYSVACSPTDATLVATGGG-D----DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL-------  130 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-------  130 (290)
                      |...+..++|+| ++++||.+.. .    ..|++||+.+++.+.... +...+..++|+|+ +.|+.++.++.       
T Consensus       161 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          161 GATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             --EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            445788999999 5555555433 2    359999999988754321 2222357899999 98888876654       


Q ss_pred             -------EEEEcCCCCce--EEEEec--CCCCEEEEEEcCCCCEEEEeeCCC-----eEEEEECCcc--cEEEeeecCCC
Q 022910          131 -------VQIWDPSSGNL--KCTLEG--PGGGVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRA--AYLNMFSGHGS  192 (290)
Q Consensus       131 -------i~i~d~~~~~~--~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~  192 (290)
                             |++|++.++..  ...+..  +...+..+.|+|+|++|+..+.++     .|++||+.++  +....+..+..
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  317 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK  317 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence                   89999987752  233333  223588999999999888877544     8999999876  31444544544


Q ss_pred             CeEEEEEcCCCCEEEEEeC----CCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-
Q 022910          193 SVTCGDFTPDGKTICTGSD----DATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-  266 (290)
Q Consensus       193 ~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-  266 (290)
                      .+.... +|+++.|+..+.    .+.|.+||+.++. ....+...  +...+..+.|+ ++.++++...++..++|.+. 
T Consensus       318 ~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~--~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~  393 (741)
T 1yr2_A          318 AQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE--SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL  393 (741)
T ss_dssp             SCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC--CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET
T ss_pred             ceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC--CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence            555543 488888887765    3469999998752 33333322  34456777887 66788888889877777554 


Q ss_pred             CCcEEEEEccC-CCcEEEEEEecCC
Q 022910          267 TGKVVSSLVSH-TDSIECIGFSRSE  290 (290)
Q Consensus       267 ~~~~~~~~~~~-~~~v~~i~~s~d~  290 (290)
                      +++.+..+..+ .+.|..++++|++
T Consensus       394 ~g~~~~~l~~~~~~~v~~~~~s~d~  418 (741)
T 1yr2_A          394 DGKPAGAVSLPGIGSASGLSGRPGD  418 (741)
T ss_dssp             TSCEEEECBCSSSCEEEEEECCBTC
T ss_pred             CCCceeeccCCCCeEEEEeecCCCC
Confidence            56677777653 5788999999875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.70  E-value=2e-14  Score=116.77  Aligned_cols=226  Identities=12%  Similarity=0.084  Sum_probs=157.7

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ...+..+..+........|+|++..+++++..++.|..|+. +++ ...+..+...+..++++++|+++++....+.|.+
T Consensus        34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITR  111 (305)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence            34555666666778899999955558888888999999988 444 3444445677899999999997766666688999


Q ss_pred             EcCCCCceEEEEecC----CCCEEEEEEcCCCCEEEE----eeC-------------CCeEEEEECCcccEEEeeecCCC
Q 022910          134 WDPSSGNLKCTLEGP----GGGVEWVSWHPRGHIVLA----GSE-------------DSTVWMWNADRAAYLNMFSGHGS  192 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~  192 (290)
                      |+.. ++........    ...+..++++|+|+++++    |..             .+.|+.|+..+++.....  ...
T Consensus       112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~  188 (305)
T 3dr2_A          112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD  188 (305)
T ss_dssp             ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred             ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence            9986 5543222111    124677999999998886    432             356888887666544333  334


Q ss_pred             CeEEEEEcCCCCEEEEEeCC------CeEEEEcCCCCee--eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910          193 SVTCGDFTPDGKTICTGSDD------ATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       193 ~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  264 (290)
                      ....++|+|+++.|+++...      +.|++|++..+..  ...+...  .......++++++|++++ ++.+ .|.+|+
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~  264 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGWLWS-SSGT-GVCVFD  264 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSCEEE-CCSS-EEEEEC
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCCEEE-ecCC-cEEEEC
Confidence            56889999999988877665      7899999876541  1122111  233456789999998554 4444 599999


Q ss_pred             cCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          265 ITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       265 ~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      . .++.+..+..+. .+.+++|+|++
T Consensus       265 ~-~g~~~~~~~~~~-~~~~~~f~~d~  288 (305)
T 3dr2_A          265 S-DGQLLGHIPTPG-TASNCTFDQAQ  288 (305)
T ss_dssp             T-TSCEEEEEECSS-CCCEEEECTTS
T ss_pred             C-CCCEEEEEECCC-ceeEEEEeCCC
Confidence            7 688888887655 58899998764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.69  E-value=5.3e-13  Score=107.48  Aligned_cols=221  Identities=14%  Similarity=0.116  Sum_probs=161.6

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee-eeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS-EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      ......+.++++.+ ++.++++...++.|.+|+.. ++... .+......+.++++.++++.+++...++.|..|+.. +
T Consensus        16 ~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           16 SIPDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            34456889999999 67777777778999999987 55433 223334678999999999877777667889999988 5


Q ss_pred             ceEEEEe--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE-eeecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910          140 NLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (290)
Q Consensus       140 ~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  216 (290)
                      +.. .+.  .....+..+++.++++++++...++.|..|+.. ++... .+......+..+++.++++++++....+.|.
T Consensus        93 ~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  170 (300)
T 2qc5_A           93 GFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG  170 (300)
T ss_dssp             CEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence            543 332  234568999999999988887778899999987 55432 2333456789999999999777766688999


Q ss_pred             EEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE-EccCCCcEEEEEEecCC
Q 022910          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS-LVSHTDSIECIGFSRSE  290 (290)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~i~~s~d~  290 (290)
                      .|+. +++... +.. ......+..+++++++.++++....+.|.+|+. +++.... +..+...+.+|+++++|
T Consensus       171 ~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g  241 (300)
T 2qc5_A          171 RITN-TGKLEE-YPL-PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNS  241 (300)
T ss_dssp             EECT-TCCEEE-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT
T ss_pred             EECC-CCcEEE-eeC-CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCC
Confidence            9998 555433 322 113456889999999988877777788999998 5554443 33345678899998875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.69  E-value=1.2e-15  Score=126.47  Aligned_cols=165  Identities=12%  Similarity=0.102  Sum_probs=131.9

Q ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-----------eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEE
Q 022910          109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN  177 (290)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d  177 (290)
                      +++.+++++...++++|+.++ +++|++....           ...... +.. |++++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            688999999999999999875 6669864322           222333 455 999999  89999999 789999999


Q ss_pred             CCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 022910          178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD  257 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  257 (290)
                      +++.........+..++..+.+.+.  .+++++.||.|.+||+.++....       +...|++++|+|+|  ++.|..|
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE--EEEEETT
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc--eEEEEcC
Confidence            9887766666677788888887764  38888999999999999877542       34579999999999  6789999


Q ss_pred             CcEEEEEcCCCcE--EEEE------c---cCCCcEEEEEEecCC
Q 022910          258 GSVHMVNITTGKV--VSSL------V---SHTDSIECIGFSRSE  290 (290)
Q Consensus       258 g~i~~wd~~~~~~--~~~~------~---~~~~~v~~i~~s~d~  290 (290)
                      |.|++|+...+..  .+++      .   +|...|.+|.|.+++
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence            9999999877775  5666      2   367899999998764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.68  E-value=4.9e-13  Score=107.70  Aligned_cols=220  Identities=9%  Similarity=0.059  Sum_probs=157.2

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee-eeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS-EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (290)
                      +...+.++++.+ ++.++++...++.|..|+.. ++... .+......+.++++.++++++++...++.|..++.. ++.
T Consensus        60 ~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~  136 (300)
T 2qc5_A           60 PDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI  136 (300)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence            346789999998 66777777667889999987 54432 222234678999999999888777768899999987 554


Q ss_pred             EEE-EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEe-eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910          142 KCT-LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (290)
Q Consensus       142 ~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  219 (290)
                      ... +......+..+++.++++++++....+.|..|+. +++.... .......+..+++.++++++++....+.|.+|+
T Consensus       137 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  215 (300)
T 2qc5_A          137 YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT  215 (300)
T ss_dssp             EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence            422 2223457899999999997777766789999998 5544332 223445689999999998777777778899999


Q ss_pred             CCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE-EccCCCcEEEEEEecCC
Q 022910          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS-LVSHTDSIECIGFSRSE  290 (290)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~i~~s~d~  290 (290)
                      . ++.... +... .....+.+++++++|+++++...++.|..|+. +++.... +......+.++++.++|
T Consensus       216 ~-~g~~~~-~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g  283 (300)
T 2qc5_A          216 T-TGEISE-YDIP-TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDG  283 (300)
T ss_dssp             T-TCCEEE-EECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTS
T ss_pred             C-CCcEEE-EECC-CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCC
Confidence            8 444333 2211 13466889999999987777767789999998 4554322 33334567888888765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.67  E-value=1.7e-13  Score=119.91  Aligned_cols=228  Identities=11%  Similarity=0.062  Sum_probs=159.6

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc--CCeeeeeeccccCCEEEEEEC----CCCCEEEEEeC-C
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--QGDWASEIQGHKDSVSSLAFS----MDGQLLASGGL-D  128 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~-d  128 (290)
                      .+..+.. ...+..+.|+| +++++++++.++.|.+||+.  +++.+..+.... ....++|+    |+|+++++++. .
T Consensus       189 v~~~i~~-g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~  265 (567)
T 1qks_A          189 IKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWP  265 (567)
T ss_dssp             EEEEEEC-SSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEET
T ss_pred             EEEEEeC-CCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccC
Confidence            3444432 23567999999 66777778889999999996  777777776433 45789999    69998887765 5


Q ss_pred             CcEEEEcCCCCceEEEEecCC-------------------------------------------------------CCEE
Q 022910          129 GLVQIWDPSSGNLKCTLEGPG-------------------------------------------------------GGVE  153 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~-------------------------------------------------------~~i~  153 (290)
                      ++|.|+|..+.+++..+....                                                       ....
T Consensus       266 ~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~  345 (567)
T 1qks_A          266 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH  345 (567)
T ss_dssp             TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred             CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccccc
Confidence            999999998887776553210                                                       1123


Q ss_pred             EEEEcCCCCEEEEee-CCCeEEEEECCcccEEEeeec-----CCCCeEEEEEcCCCCEE-EEEe-CCCeEEEEcCCC---
Q 022910          154 WVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSG-----HGSSVTCGDFTPDGKTI-CTGS-DDATLRVWNPKS---  222 (290)
Q Consensus       154 ~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l-~~~~-~dg~i~i~d~~~---  222 (290)
                      .+.|+|++++|+++. .++.|.++|+.+++.+..+..     |.+.-..+ ++|++..+ +++. .++.|.++|..+   
T Consensus       346 d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~  424 (567)
T 1qks_A          346 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGH  424 (567)
T ss_dssp             EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             CceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence            567999999887765 578899999999987766653     22211122 57875444 4443 468999999987   


Q ss_pred             ----CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCC-----c-EEEEEc--------cC
Q 022910          223 ----GENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-------DGSVHMVNITTG-----K-VVSSLV--------SH  277 (290)
Q Consensus       223 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~~wd~~~~-----~-~~~~~~--------~~  277 (290)
                          .+.++.+...   ...-..+..+|++++|++...       .++|.++|+.+.     . .+..+.        ..
T Consensus       425 ~~~~~kvv~~i~~~---g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~  501 (567)
T 1qks_A          425 PDNAWKILDSFPAL---GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG  501 (567)
T ss_dssp             TTTBTSEEEEEECS---CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS
T ss_pred             ccccCEEEEEEecC---CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC
Confidence                5666777652   233345778999999998763       359999999876     2 223332        12


Q ss_pred             CCcEEEEEEecCC
Q 022910          278 TDSIECIGFSRSE  290 (290)
Q Consensus       278 ~~~v~~i~~s~d~  290 (290)
                      ...+..+.|+|+|
T Consensus       502 ~~~~~~~~~~~~G  514 (567)
T 1qks_A          502 QPRVVQGEFNKDG  514 (567)
T ss_dssp             CCEEEEEEECTTS
T ss_pred             CcceEeeeECCCC
Confidence            3578999999986

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.66  E-value=7.7e-13  Score=110.25  Aligned_cols=207  Identities=10%  Similarity=-0.031  Sum_probs=137.3

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEec----------CCCcEEEEEccCCeeeeeeccc-------cCCEEEEEECCC
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGG----------GDDKGFFWRINQGDWASEIQGH-------KDSVSSLAFSMD  118 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~-------~~~i~~~~~~~~  118 (290)
                      .+..+.....+  .++++| +++.++++.          .++.|.+||..+.+.+..+...       ......+.|+|+
T Consensus        59 ~~~~i~~g~~p--~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spD  135 (373)
T 2mad_H           59 ILGHVNGGFLP--NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN  135 (373)
T ss_pred             EEEEecCCCCC--CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCC
Confidence            34445444444  999999 555555543          3678999999988877765422       123458999999


Q ss_pred             CCEEEEEeC--CCcEEEEcCCCCceEEE-EecCCCCEEEEEEcCCC-CEEEEeeCC------------------------
Q 022910          119 GQLLASGGL--DGLVQIWDPSSGNLKCT-LEGPGGGVEWVSWHPRG-HIVLAGSED------------------------  170 (290)
Q Consensus       119 ~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~-~~l~~~~~d------------------------  170 (290)
                      |++|+++..  ++.|.++| .+++.+.. +.....    +.+.|.+ +.+++.+.+                        
T Consensus       136 G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~  210 (373)
T 2mad_H          136 NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC----YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA  210 (373)
T ss_pred             CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce----EEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccC
Confidence            999998874  57899999 99988777 543221    1222221 122222233                        


Q ss_pred             -----------------------CeEEEEECCccc--EEEeeec----------CCCCeEEEEEcCCCCEEEEEeC----
Q 022910          171 -----------------------STVWMWNADRAA--YLNMFSG----------HGSSVTCGDFTPDGKTICTGSD----  211 (290)
Q Consensus       171 -----------------------g~i~i~d~~~~~--~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~----  211 (290)
                                             +.+.+.|+....  .+..+..          .......+.++|+++.++++..    
T Consensus       211 ~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~  290 (373)
T 2mad_H          211 AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA  290 (373)
T ss_pred             CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence                                   344444443221  1111110          0122334778998888887653    


Q ss_pred             ------CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCcEEEEE
Q 022910          212 ------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGS-KDGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       212 ------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~~  274 (290)
                            .+.|.++|+.+++.+..+..    .....++.|+|+|+ +|+++. .++.|.+||+.+++.+.++
T Consensus       291 ~~~~~~~~~V~VID~~t~~vv~~i~~----g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          291 WKLHAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             ccccCCCCeEEEEECCCCEEEEEEEC----CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence                  35799999999999888863    44688999999999 787777 4899999999999999984

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=4.1e-14  Score=127.94  Aligned_cols=198  Identities=9%  Similarity=0.011  Sum_probs=141.7

Q ss_pred             EEEEEECCCCCcEEEEecCCCc----------------EEEEEccCCee----eeeeccccCCEEEEEECCCCCEEEEEe
Q 022910           67 VYSVACSPTDATLVATGGGDDK----------------GFFWRINQGDW----ASEIQGHKDSVSSLAFSMDGQLLASGG  126 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~----------------i~iw~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~  126 (290)
                      +..++|+| +++.|+.++.++.                |++|++.+++.    +.....+...+..+.|+|+|++|+.++
T Consensus       173 ~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~  251 (710)
T 2xdw_A          173 FSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (710)
T ss_dssp             SCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             cceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence            56799999 6666666666554                99999987652    222333556688999999999988876


Q ss_pred             C-----CCcEEEEcCCC------Cc-eEEEEecCCCCEEEEEEcCCCCEEEEeeCC----CeEEEEECCccc--EEEeee
Q 022910          127 L-----DGLVQIWDPSS------GN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAA--YLNMFS  188 (290)
Q Consensus       127 ~-----dg~i~i~d~~~------~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~--~~~~~~  188 (290)
                      .     +..|++||+.+      +. ....+..+...+.. .|+|++..|+..+..    +.|.+|++.++.  ....+.
T Consensus       252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          252 REGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             ECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             EccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence            5     56899999976      43 34555555555554 488888887776653    469999998764  123444


Q ss_pred             cCCC--CeEEEEEcCCCCEEEEEeCCCe--EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE-e---CCCcE
Q 022910          189 GHGS--SVTCGDFTPDGKTICTGSDDAT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-S---KDGSV  260 (290)
Q Consensus       189 ~~~~--~i~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i  260 (290)
                      .+..  .+..++|++++.++++...++.  |++|++.+++.+..+..   +...+..+.++|++..|+.. +   ..+.|
T Consensus       331 ~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~---~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i  407 (710)
T 2xdw_A          331 PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL---EVGSVVGYSGQKKDTEIFYQFTSFLSPGII  407 (710)
T ss_dssp             CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC---CSSEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred             CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC---CCceEEEEecCCCCCEEEEEEeCCCCCCEE
Confidence            4433  6888999987778888888884  66778877776666665   45678889999988766543 2   24789


Q ss_pred             EEEEcCCCc
Q 022910          261 HMVNITTGK  269 (290)
Q Consensus       261 ~~wd~~~~~  269 (290)
                      ++||+.+++
T Consensus       408 ~~~d~~tg~  416 (710)
T 2xdw_A          408 YHCDLTKEE  416 (710)
T ss_dssp             EEEETTSSS
T ss_pred             EEEECCCCc
Confidence            999998876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.64  E-value=7.5e-13  Score=110.31  Aligned_cols=206  Identities=13%  Similarity=0.069  Sum_probs=138.8

Q ss_pred             CCcEEEEecC--CC---cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe----------CCCcEEEEcCCCCc
Q 022910           76 DATLVATGGG--DD---KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWDPSSGN  140 (290)
Q Consensus        76 ~~~~l~~~~~--dg---~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~  140 (290)
                      ++..+++...  ..   .|.+||..+++.+..+.....+  .++++|++++++++.          .++.|.+||..+.+
T Consensus        31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~  108 (373)
T 2mad_H           31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL  108 (373)
T ss_pred             CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence            4455555442  22   8899999999988888754444  899999999988886          36789999999988


Q ss_pred             eEEEEecC-------CCCEEEEEEcCCCCEEEEeeC--CCeEEEEECCcccEEEe-eecCCCCeEEEEEcCCC-CEEEEE
Q 022910          141 LKCTLEGP-------GGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDG-KTICTG  209 (290)
Q Consensus       141 ~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~  209 (290)
                      .+..+...       ......+.|+|+|++|+++..  ++.|.++| .+++.+.. +.... .   +.+.|.+ +.+++.
T Consensus       109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~---~~~~~~~~~~~~~~  183 (373)
T 2mad_H          109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-C---YHIHPGAPSTFYLL  183 (373)
T ss_pred             EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-e---EEEEeCCCceEEEE
Confidence            88776543       123457999999999999874  47899999 99988777 54221 1   2223322 233344


Q ss_pred             eCCCeEEEEcCCCCeeeE--------------------------------------------------EEeCC-------
Q 022910          210 SDDATLRVWNPKSGENIH--------------------------------------------------VIRGH-------  232 (290)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~--------------------------------------------------~~~~~-------  232 (290)
                      +.||.+.+++. +++...                                                  .+...       
T Consensus       184 ~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~  262 (373)
T 2mad_H          184 CAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD  262 (373)
T ss_pred             cCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccc
Confidence            44555544444 332221                                                  11000       


Q ss_pred             CCcccCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          233 PYHTEGLTCLTISADSTLALSGSK----------DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .........+.++|+++.|+++..          .+.|.++|+.+++.+.++.. .....+++|+|||
T Consensus       263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg  329 (373)
T 2mad_H          263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDG  329 (373)
T ss_pred             ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCC
Confidence            000122334778998888877653          35799999999999999975 3468999999986

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.64  E-value=4.6e-14  Score=118.65  Aligned_cols=182  Identities=18%  Similarity=0.194  Sum_probs=138.9

Q ss_pred             CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe----------CCCcEEEEcCCCCceEEEEecC-------C
Q 022910           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWDPSSGNLKCTLEGP-------G  149 (290)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~-------~  149 (290)
                      +.|.++|..+++.+..+.....+  .+.++|++++++++.          .++.|.++|..+++.+..+...       .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            79999999999999988865556  899999999888876          3678999999999998887642       1


Q ss_pred             CCEEEEEEcCCCCEEEEeeC--CCeEEEEECCcccEEEeeecCC----------------------------CC------
Q 022910          150 GGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHG----------------------------SS------  193 (290)
Q Consensus       150 ~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~----------------------------~~------  193 (290)
                      .....+.|+|++++++++..  ++.|.++|+.+++.+.++....                            ..      
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~  256 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT  256 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence            23567899999999999874  5789999998876554432100                            00      


Q ss_pred             -------------------------------e---------------------------------EEEEEcCCCCEEEEE
Q 022910          194 -------------------------------V---------------------------------TCGDFTPDGKTICTG  209 (290)
Q Consensus       194 -------------------------------i---------------------------------~~~~~~~~~~~l~~~  209 (290)
                                                     +                                 ..++++|+++.+++.
T Consensus       257 ~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa  336 (426)
T 3c75_H          257 EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLL  336 (426)
T ss_dssp             CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEE
T ss_pred             eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEE
Confidence                                           0                                 014556666665554


Q ss_pred             eC----------CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCcEEEEE
Q 022910          210 SD----------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGS-KDGSVHMVNITTGKVVSSL  274 (290)
Q Consensus       210 ~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~~  274 (290)
                      ..          .+.|.++|+.+.+.+..+..    ......+.|+|+++ +|++.. .++.|.++|+.+++.++++
T Consensus       337 ~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          337 VDQRDEWKHKAASRFVVVLNAETGERINKIEL----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ecccccccccCCCCEEEEEECCCCeEEEEEEC----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            32          34688888888888777763    34578899999999 888888 5899999999999999998

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.63  E-value=9.7e-14  Score=114.75  Aligned_cols=210  Identities=16%  Similarity=0.173  Sum_probs=142.0

Q ss_pred             EECCCCCcEEEEecC-----CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe----------CCCcEEEEc
Q 022910           71 ACSPTDATLVATGGG-----DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWD  135 (290)
Q Consensus        71 ~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d  135 (290)
                      ...| ++..+++...     ++.|.++|..+++.+..+.....+ . ++++|+++++++++          .++.|.+||
T Consensus        39 ~~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           39 APAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ccCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            3456 4444444433     679999999999999988765555 4 99999999888775          367899999


Q ss_pred             CCCCceEEEEecCC-------CCEEEEEEcCCCCEEEEeeC--CCeEEEEECCcccEEEeeec-----------------
Q 022910          136 PSSGNLKCTLEGPG-------GGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSG-----------------  189 (290)
Q Consensus       136 ~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~-----------------  189 (290)
                      ..+++.+..+....       .....+.|+|+|++++++..  ++.|.++|+.+++.+.++..                 
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~  195 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH  195 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEE
Confidence            99999988876432       24567999999999888864  68899999998766544421                 


Q ss_pred             ------------CCCCeEE----------------EEEc-CCCCEEEEEeCCCeEEEEcCCCC-----------------
Q 022910          190 ------------HGSSVTC----------------GDFT-PDGKTICTGSDDATLRVWNPKSG-----------------  223 (290)
Q Consensus       190 ------------~~~~i~~----------------~~~~-~~~~~l~~~~~dg~i~i~d~~~~-----------------  223 (290)
                                  ....+..                ..|. ++|++++ .+.+|.|+++|+.+.                 
T Consensus       196 ~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~  274 (386)
T 3sjl_D          196 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  274 (386)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccc
Confidence                        0011100                1121 2333333 334566666666432                 


Q ss_pred             -----------------------------------------------eeeEEEeCCCCcccCeEEEEEcCCCC-EEEEE-
Q 022910          224 -----------------------------------------------ENIHVIRGHPYHTEGLTCLTISADST-LALSG-  254 (290)
Q Consensus       224 -----------------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-  254 (290)
                                                                     +.+..+.    ....+.+|.++|+++ +|+++ 
T Consensus       275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~----vg~~~~~lavs~D~~~~ly~tn  350 (386)
T 3sjl_D          275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE----MGHEIDSINVSQDEKPLLYALS  350 (386)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE----EEEEECEEEECSSSSCEEEEEE
T ss_pred             ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE----CCCCcceEEECCCCCeEEEEEc
Confidence                                                           2222221    123456899999986 66665 


Q ss_pred             eCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          255 SKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       255 ~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      ..++.|.++|..+++.++++... +.-..|.+++|
T Consensus       351 ~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          351 TGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             TTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             CCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence            45899999999999999999863 44556677765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.63  E-value=1.2e-16  Score=133.35  Aligned_cols=201  Identities=13%  Similarity=0.080  Sum_probs=118.5

Q ss_pred             CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCC-EE-
Q 022910           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-VE-  153 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~-  153 (290)
                      .+..+++++.+|.|+.||..+++.+..+..  ..+.+..+..++..+++++.+|.|+.||..+++.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            345777888999999999999999888875  45555556667778888889999999999999876665432110 00 


Q ss_pred             EEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC
Q 022910          154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP  233 (290)
Q Consensus       154 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  233 (290)
                      ...+. .+..+++++.++.|+.||.++++.+..+..+.    ...++|.+..+++++.++.|+.||.++++.+..+... 
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-  159 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF-  159 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE-
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc-
Confidence            00111 34578888889999999999999887776443    2345678888999999999999999999876665421 


Q ss_pred             CcccCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEE-EEEEecC
Q 022910          234 YHTEGLTCLTISADS---TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE-CIGFSRS  289 (290)
Q Consensus       234 ~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~-~i~~s~d  289 (290)
                        .  .....+.++.   ..+++++.+|.|+.||..+|+.+.++... .++. ...++++
T Consensus       160 --~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~~~~~~~d  214 (369)
T 2hz6_A          160 --D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVAFYVWQRE  214 (369)
T ss_dssp             --E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-SCEEEEEECTTS
T ss_pred             --c--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-CceEEEEEecCC
Confidence              1  1222333322   56777889999999999999999887743 4443 3444444

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.63  E-value=9.3e-13  Score=106.95  Aligned_cols=198  Identities=12%  Similarity=0.172  Sum_probs=140.5

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee-ecc----ccCCEEEEEECCCCCEEEEEeCC---------
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQG----HKDSVSSLAFSMDGQLLASGGLD---------  128 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d---------  128 (290)
                      +...+.+++++++++.++++.. .+.|.+|+.. ++.... ...    ....+.++++.++++++++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            5577999999994266665554 3478899988 665433 221    12357899999999877776654         


Q ss_pred             ------CcEEEEcCCCCceEEEEecCCCCEEEEEEc----CCCCEEEEe-eCCCeEEEEECC-ccc-----EEEeeecCC
Q 022910          129 ------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWH----PRGHIVLAG-SEDSTVWMWNAD-RAA-----YLNMFSGHG  191 (290)
Q Consensus       129 ------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~-----~~~~~~~~~  191 (290)
                            +.|..|+.. ++..... .+......++|+    |+++.|+++ ..++.|.+|++. .++     ....+..+.
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  224 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             cccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence                  567888766 5544333 233457889999    999765555 567899999976 333     222333333


Q ss_pred             -CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCC
Q 022910          192 -SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGSVHMVNITT  267 (290)
Q Consensus       192 -~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~  267 (290)
                       ..+..++++++|+++++...++.|.+||..+++....+..   +...+.+++|+|+++.|+ +...++.|..|++..
T Consensus       225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC---PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC---SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC---CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence             5678999999999888888889999999987777666654   446789999999999554 455568899999864

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.61  E-value=7e-14  Score=126.12  Aligned_cols=177  Identities=13%  Similarity=0.102  Sum_probs=121.5

Q ss_pred             ccCCEEEEEECCCCCEEEEE-----eCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCe--------
Q 022910          106 HKDSVSSLAFSMDGQLLASG-----GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST--------  172 (290)
Q Consensus       106 ~~~~i~~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~--------  172 (290)
                      |...+..++|||+|++||.+     +.+..|++||+.+++.+............++|+|+|+.|+.++.+..        
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~  198 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER  198 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence            44578999999999998843     34568999999998864111111111267999999999999988765        


Q ss_pred             -----EEEEECCccc----EEEeeecCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEcCCCCeeeEEEeCCCCcccCe
Q 022910          173 -----VWMWNADRAA----YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA----TLRVWNPKSGENIHVIRGHPYHTEGL  239 (290)
Q Consensus       173 -----i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~v  239 (290)
                           |++|++.+++    .+.....+...+..+.|+|+|++|+.++.++    .|++|+..++.. ..+..   +...+
T Consensus       199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~---~~~~~  274 (695)
T 2bkl_A          199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVK---GVGAK  274 (695)
T ss_dssp             GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEE---CSSCC
T ss_pred             CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeec---CCCce
Confidence                 9999998775    3333344556788999999999998877666    788887765544 33333   33445


Q ss_pred             EEEEEcCCCCEEEEEe---CCCcEEEEEcCCCcE--EEEEcc-C-CCcEEEEEEe
Q 022910          240 TCLTISADSTLALSGS---KDGSVHMVNITTGKV--VSSLVS-H-TDSIECIGFS  287 (290)
Q Consensus       240 ~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~--~~~~~~-~-~~~v~~i~~s  287 (290)
                      ....+ ++|.+++.+.   .++.|++|++.+++.  ...+.. + ...|..++|+
T Consensus       275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence            55566 5566444444   257899999987653  233333 3 4567778776

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.61  E-value=3.9e-13  Score=110.98  Aligned_cols=220  Identities=9%  Similarity=0.045  Sum_probs=148.6

Q ss_pred             cCEEEEEECCCCCcEEEEec--CCCcEEEEEccCCeeeeee-------ccccCCEEEEEECCCCCEEEEEeC-----CCc
Q 022910           65 DEVYSVACSPTDATLVATGG--GDDKGFFWRINQGDWASEI-------QGHKDSVSSLAFSMDGQLLASGGL-----DGL  130 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~-----dg~  130 (290)
                      ..+..++++| +++++++..  .++.++||.+.+++.. .+       ..+...+..++++++++++++-..     ++.
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            6889999999 677777753  2343566666555433 22       134567999999999876665433     578


Q ss_pred             EEEEcCCCCceEEEEecC------CCCEEEEEEcCCCCEE-EEee---CCCeEEEEECCcccEEEeeecC----------
Q 022910          131 VQIWDPSSGNLKCTLEGP------GGGVEWVSWHPRGHIV-LAGS---EDSTVWMWNADRAAYLNMFSGH----------  190 (290)
Q Consensus       131 i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l-~~~~---~dg~i~i~d~~~~~~~~~~~~~----------  190 (290)
                      |.+||+.+++.+..+..+      ...+..+++++++..+ ++..   .++.|.+||+.+++..+.+..|          
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            999999999877766532      2346889999865444 4444   5789999999887766554321          


Q ss_pred             -------------------CCCeEEEEEcCCCCEEEEEeCCC-eEEEEcCC---CCe--------eeEEEeCCCCcccCe
Q 022910          191 -------------------GSSVTCGDFTPDGKTICTGSDDA-TLRVWNPK---SGE--------NIHVIRGHPYHTEGL  239 (290)
Q Consensus       191 -------------------~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~---~~~--------~~~~~~~~~~~~~~v  239 (290)
                                         ...+..|+|+|+++.|+++...+ .|..++..   .+.        .+..+ +   +....
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g---~~g~p  250 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-S---EKPIC  250 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-E---ECCSC
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-c---cCCCC
Confidence                               12368899999999888877666 55555431   110        01111 1   22345


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc-CCCcEEEEEEecCC
Q 022910          240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS-HTDSIECIGFSRSE  290 (290)
Q Consensus       240 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~i~~s~d~  290 (290)
                      ..++++++|.++++...++.|.+|+..+++....... +...+.+++|.++|
T Consensus       251 dgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g  302 (343)
T 2qe8_A          251 DGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG  302 (343)
T ss_dssp             SCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred             ceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence            6789999999999998899999999856664333322 23568899998875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.58  E-value=2e-13  Score=123.09  Aligned_cols=219  Identities=9%  Similarity=0.028  Sum_probs=143.2

Q ss_pred             cCCcCEEEEEECCCCCcEEE-Eec----CCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC-------
Q 022910           62 GHSDEVYSVACSPTDATLVA-TGG----GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-------  129 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~-~~~----~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------  129 (290)
                      +|...+..++|+| ++++|| +.+    ....|++||+.+++.+.... +......++|+ |++.|+.++.+.       
T Consensus       126 ~~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccc
Confidence            4566789999999 555555 332    23579999999988654311 11113567899 999999888774       


Q ss_pred             ------cEEEEcCCCCce--EEEEe--c-CCCCEEEEEEcCCCCEEEEeeC----CCeEEEEECCccc-EEEeeecCCCC
Q 022910          130 ------LVQIWDPSSGNL--KCTLE--G-PGGGVEWVSWHPRGHIVLAGSE----DSTVWMWNADRAA-YLNMFSGHGSS  193 (290)
Q Consensus       130 ------~i~i~d~~~~~~--~~~~~--~-~~~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~  193 (290)
                            .|++|++.+...  ...+.  . +......+.|+|++++|+....    ...|+++++.++. ....+..+...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                  399999987653  23333  2 3445788999999998865442    3589999998763 34455555555


Q ss_pred             eEEEEEcCCCCEEEEEe-CC---CeEEEEcCCCCee--eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC---cEEEEE
Q 022910          194 VTCGDFTPDGKTICTGS-DD---ATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHMVN  264 (290)
Q Consensus       194 i~~~~~~~~~~~l~~~~-~d---g~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd  264 (290)
                      .... |++++..|+..+ .+   +.|..+++.++..  ...+..   +...+.  .|+++++.|+....++   .|++|+
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---ERQQVL--TVHSGSGYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec---CCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence            5554 666666665444 33   6899999987654  234443   333333  7888888777665543   689999


Q ss_pred             cCCCcEEEEEcc-CCCcEEEEEEecCC
Q 022910          265 ITTGKVVSSLVS-HTDSIECIGFSRSE  290 (290)
Q Consensus       265 ~~~~~~~~~~~~-~~~~v~~i~~s~d~  290 (290)
                      +.. .....+.. ..+.+..+.++|++
T Consensus       357 ~~g-~~~~~l~~p~~~~~~~~~~~~d~  382 (693)
T 3iuj_A          357 YEG-KRVREVALPGLGSVSGFNGKHDD  382 (693)
T ss_dssp             TTS-CEEEEECCSSSSEEEECCCCTTC
T ss_pred             CCC-CeeEEeecCCCceEEeeecCCCC
Confidence            874 44555542 34567777776653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.57  E-value=3.9e-11  Score=95.30  Aligned_cols=221  Identities=11%  Similarity=0.033  Sum_probs=149.0

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEcCCCCceEE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~  143 (290)
                      ..+.+++|++.++.++++....+.|..+++........+.........+++.+++..|+.+ ...+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            4678999999677788787778999999987655433333233567899999976655554 456789999987544333


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEeeC---CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE-EeCCCeEEEEc
Q 022910          144 TLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT-GSDDATLRVWN  219 (290)
Q Consensus       144 ~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d  219 (290)
                      ...........++++|++..|+.+..   .+.|..+++..................++++|++..|+. -...+.|.+++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence            33323346789999997666555553   468988888643322222223346789999998766654 45568999999


Q ss_pred             CCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC-CcEEEEEEecCC
Q 022910          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT-DSIECIGFSRSE  290 (290)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~i~~s~d~  290 (290)
                      +........+..    ......++.. .+.++++....+.|.+++..+++.+..+.... ....+|++.|++
T Consensus       196 ~~g~~~~~~~~~----~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          196 PAQPGRRKVLEG----LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             TTEEEEEEEEEC----CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             cCCCceEEEecC----CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence            976544333332    2234566664 34444444556899999999999999987543 257889998874

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.56  E-value=5.6e-12  Score=101.84  Aligned_cols=187  Identities=11%  Similarity=0.031  Sum_probs=128.5

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc----ccCCEEEEEECCCCCEEEEEeCC---------C
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG----HKDSVSSLAFSMDGQLLASGGLD---------G  129 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d---------g  129 (290)
                      ....+.+++++| ++.++++.  ++.|.+|+..+++.......    ....+..++++|+|+++++....         .
T Consensus        52 ~~~~~~~i~~~~-dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~  128 (297)
T 3g4e_A           52 MDAPVSSVALRQ-SGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERH  128 (297)
T ss_dssp             CSSCEEEEEEBT-TSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTT
T ss_pred             CCCceEEEEECC-CCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCC
Confidence            346789999999 55555543  46899999988765433221    12357899999999966654321         2


Q ss_pred             cEEEEcCCC-CceEEEEecCCCCEEEEEEcCCCCEEEE-eeCCCeEEEEEC--CcccE-----EEeeecCCCCeEEEEEc
Q 022910          130 LVQIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNA--DRAAY-----LNMFSGHGSSVTCGDFT  200 (290)
Q Consensus       130 ~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~d~--~~~~~-----~~~~~~~~~~i~~~~~~  200 (290)
                      .-.||.+.. ++.. .+.........++|+|+++.|+. .+..+.|.+|++  .++..     +..+......+..+++.
T Consensus       129 ~~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d  207 (297)
T 3g4e_A          129 QGALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID  207 (297)
T ss_dssp             CEEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred             CcEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence            234444432 3333 23333345788999999986654 555789999997  34432     22233334567899999


Q ss_pred             CCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEc-CCCCEEEEEeC
Q 022910          201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGSK  256 (290)
Q Consensus       201 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~  256 (290)
                      ++|++.++....+.|.+||..+++.+..+..   ....+++++|. |+++.|++++.
T Consensus       208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~---p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKL---PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TTSCEEEEEETTTEEEEECTTTCCEEEEEEC---SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCEEEEEcCCCEEEEEcCCCceEEEEEEC---CCCCceEEEEeCCCCCEEEEEcC
Confidence            9999888888888999999998988888775   44679999998 78776665544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.54  E-value=6.3e-12  Score=104.86  Aligned_cols=216  Identities=13%  Similarity=0.101  Sum_probs=151.9

Q ss_pred             CCCCcEEEEecCCCcEEEEEccCC----eeeeeec-------cccCCEEEEEECCCCCEEEEEeCC------CcEEEEcC
Q 022910           74 PTDATLVATGGGDDKGFFWRINQG----DWASEIQ-------GHKDSVSSLAFSMDGQLLASGGLD------GLVQIWDP  136 (290)
Q Consensus        74 ~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~  136 (290)
                      ++..++++++..++.|.++|+.+.    +....+.       .....-..+...|++ .++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            656678888889999999999754    5555552       111245677889999 76666555      78999999


Q ss_pred             CCCceEEEEecCCC---CEEEEEEcCCCCEEEEee-------------------CCCeEEEEECCcccEEEeeecC--CC
Q 022910          137 SSGNLKCTLEGPGG---GVEWVSWHPRGHIVLAGS-------------------EDSTVWMWNADRAAYLNMFSGH--GS  192 (290)
Q Consensus       137 ~~~~~~~~~~~~~~---~i~~i~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~--~~  192 (290)
                      .+++.+.++.....   --..+.|+|+++.++++.                   ...+|.+||+.+++.+.++...  ..
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            99999988873322   234588899999999885                   3689999999998888877653  13


Q ss_pred             CeEEEEE--cCCCCEEEEEe------CCCeEEEEcCCCCee--eEEE--eCCCC-------------cccCeEEEEEcCC
Q 022910          193 SVTCGDF--TPDGKTICTGS------DDATLRVWNPKSGEN--IHVI--RGHPY-------------HTEGLTCLTISAD  247 (290)
Q Consensus       193 ~i~~~~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~--~~~~--~~~~~-------------~~~~v~~~~~~~~  247 (290)
                      ....+.|  +|+++++++++      .+++|.+|....+..  .+.+  ...+.             .......+.++||
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            4455656  99999988777      566887766544321  1111  11000             0245788999999


Q ss_pred             CCEEEEEeC-CCcEEEEEcC---CCcEEEEEccCC--------------CcEEEEEEecCC
Q 022910          248 STLALSGSK-DGSVHMVNIT---TGKVVSSLVSHT--------------DSIECIGFSRSE  290 (290)
Q Consensus       248 ~~~l~~~~~-dg~i~~wd~~---~~~~~~~~~~~~--------------~~v~~i~~s~d~  290 (290)
                      |++|+++.. .+.|.+||+.   +.+++..+....              +.-+.++++|||
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG  392 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG  392 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC
Confidence            999988876 6799999985   346666665421              135888999986

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.54  E-value=1.3e-12  Score=108.05  Aligned_cols=204  Identities=12%  Similarity=0.012  Sum_probs=147.2

Q ss_pred             cEEEEecCCC----cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe----------CCCcEEEEcCCCCceEE
Q 022910           78 TLVATGGGDD----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        78 ~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~  143 (290)
                      ..+++...++    .|.++|..+++.+.++.....+  .+.++|++++++++.          .++.|.+||+.+++.+.
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            3444544444    8889999999999998866666  799999999888886          36889999999999999


Q ss_pred             EEecC-------CCCEEEEEEcCCCCEEEEeeC--CCeEEE--EECCcccEEE---------------------------
Q 022910          144 TLEGP-------GGGVEWVSWHPRGHIVLAGSE--DSTVWM--WNADRAAYLN---------------------------  185 (290)
Q Consensus       144 ~~~~~-------~~~i~~i~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~---------------------------  185 (290)
                      ++..+       ......++++|+|++++++..  ...+.+  +|+.+...+.                           
T Consensus       111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~v  190 (368)
T 1mda_H          111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAAS  190 (368)
T ss_dssp             EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEE
T ss_pred             EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEE
Confidence            88654       123567999999999998864  356777  7774300000                           


Q ss_pred             eeec----------------------------------------------CC---------------------CCeEEEE
Q 022910          186 MFSG----------------------------------------------HG---------------------SSVTCGD  198 (290)
Q Consensus       186 ~~~~----------------------------------------------~~---------------------~~i~~~~  198 (290)
                      .+..                                              ..                     .....++
T Consensus       191 d~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~  270 (368)
T 1mda_H          191 DLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA  270 (368)
T ss_dssp             ECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred             ECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeE
Confidence            0000                                              00                     0001167


Q ss_pred             EcCCCCEEEEEeC---------CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCC
Q 022910          199 FTPDGKTICTGSD---------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGS-KDGSVHMVNITT  267 (290)
Q Consensus       199 ~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~~wd~~~  267 (290)
                      ++|+++.++++..         .+.+.++|+.+.+.+..+..    ......++|+|+|+ ++++.. .++.|.++|+.+
T Consensus       271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            8889888886543         23566999999988877763    34688999999997 456666 589999999999


Q ss_pred             CcEEEEEccCCCcEEEEEEec
Q 022910          268 GKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       268 ~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      ++.+.++... ....++++.+
T Consensus       347 ~kvv~~I~vg-~~P~~i~~~~  366 (368)
T 1mda_H          347 DQDQSSVELD-KGPESLSVQN  366 (368)
T ss_dssp             CEEEEECCCC-SCCCEEECCC
T ss_pred             CcEEEEEECC-CCCCEEEeec
Confidence            9999999864 4455666654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.52  E-value=2.8e-12  Score=116.51  Aligned_cols=174  Identities=15%  Similarity=0.153  Sum_probs=119.4

Q ss_pred             CCEEEEEECCCCCEEEEEeCC-----CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCe----------
Q 022910          108 DSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST----------  172 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~----------  172 (290)
                      ..+..++|+|+|++|+.++.+     ..|++||+.+++.+.... +...+..++|+|+ +.|+.++.++.          
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~  240 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALN  240 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCC
Confidence            468899999999998887653     469999999998764321 2112356899999 98888876543          


Q ss_pred             ----EEEEECCccc----EEEeeecCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEcCCCC--eeeEEEeCCCCccc
Q 022910          173 ----VWMWNADRAA----YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-----TLRVWNPKSG--ENIHVIRGHPYHTE  237 (290)
Q Consensus       173 ----i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~~~  237 (290)
                          |++|++.++.    .+.....+...+..+.|+|+|++|+..+.++     .|++||+.++  +....+..   +..
T Consensus       241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~  317 (741)
T 1yr2_A          241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP---DLK  317 (741)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC---SSS
T ss_pred             CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC---CCC
Confidence                8999997765    2222222334588999999999988776543     8999999877  31445543   233


Q ss_pred             CeEEEEEcCCCCEEEEEeCC----CcEEEEEcCCC--cEEEEEccCCCcEEEEEEe
Q 022910          238 GLTCLTISADSTLALSGSKD----GSVHMVNITTG--KVVSSLVSHTDSIECIGFS  287 (290)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~--~~~~~~~~~~~~v~~i~~s  287 (290)
                      .+.... +|+|..|+..+..    +.|++|++.++  +....+..+...+.+++|+
T Consensus       318 ~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~  372 (741)
T 1yr2_A          318 AQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA  372 (741)
T ss_dssp             SCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred             ceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence            344443 4888888777653    45999999875  3333344455566677776

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=1.6e-11  Score=103.58  Aligned_cols=192  Identities=11%  Similarity=0.092  Sum_probs=132.5

Q ss_pred             EEECCCCCcEEEEecCCC--cEEEEEccCCeeeeee----ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           70 VACSPTDATLVATGGGDD--KGFFWRINQGDWASEI----QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        70 ~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      ++|+| ++..|+++..++  .|.+|+...+.....+    ......+.+++++|++..|+++..++.|+.|+..++....
T Consensus       176 ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~  254 (409)
T 3hrp_A          176 PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL  254 (409)
T ss_dssp             CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE
T ss_pred             eeEec-CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE
Confidence            88888 555566665544  7888888765543333    2144567889999965666667778899999998776432


Q ss_pred             E----EecCCCCE--EEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeeecC---------------CCCeEEEEEcC
Q 022910          144 T----LEGPGGGV--EWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGH---------------GSSVTCGDFTP  201 (290)
Q Consensus       144 ~----~~~~~~~i--~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~i~~~~~~~  201 (290)
                      .    ........  ..++|+|+ +.++++-...+.|+.|+....  +..+.++               -.....++++|
T Consensus       255 ~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~  332 (409)
T 3hrp_A          255 IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE  332 (409)
T ss_dssp             EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred             EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence            2    12222222  38999995 556666667889999997654  2223222               13478999999


Q ss_pred             CCCEEEEEe-CCCeEEEEcCCCCeeeEEEeCCC------------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          202 DGKTICTGS-DDATLRVWNPKSGENIHVIRGHP------------YHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       202 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      +|+++++-+ .++.|+.|++.++... .+.+..            ..-.....+++++++.++++-..+++|+.+.+
T Consensus       333 dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          333 DGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            999777777 8899999998777643 333220            01245889999999888888888889988875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.47  E-value=2.5e-11  Score=98.36  Aligned_cols=196  Identities=13%  Similarity=0.057  Sum_probs=133.2

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec---c-ccCCEEEEEECCCCCEEEE----EeC-
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---G-HKDSVSSLAFSMDGQLLAS----GGL-  127 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~l~~----~~~-  127 (290)
                      ...+..+...+.++++.+ +++++++...++.|.+|+.. ++......   + ....+..+++.++|+++++    |.. 
T Consensus        78 ~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~  155 (305)
T 3dr2_A           78 VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRK  155 (305)
T ss_dssp             EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSC
T ss_pred             EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccc
Confidence            455666777899999999 66777666666889999976 44322211   1 1234678999999998776    332 


Q ss_pred             ------------CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC------CeEEEEECCcccEE--Eee
Q 022910          128 ------------DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYL--NMF  187 (290)
Q Consensus       128 ------------dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~  187 (290)
                                  .+.|..|+..+++.....  .......++|+|+++.|+++...      +.|++|++......  ..+
T Consensus       156 ~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~  233 (305)
T 3dr2_A          156 PSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF  233 (305)
T ss_dssp             GGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEE
T ss_pred             cccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE
Confidence                        256888888777655443  33457889999999988877665      78999998754311  111


Q ss_pred             -ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910          188 -SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       188 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  264 (290)
                       ......+..+++.++|++.+ +..+ .|.+|+. .++.+..+...    ..+.+++|+|+++.|+.++.++ ++.++
T Consensus       234 ~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~~~~----~~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          234 ASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLGHIPTP----GTASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             ECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCEEEEEECS----SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             EECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCEEEEEECC----CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence             11234456788999998544 4444 5999998 56666666642    2588899999998888887754 44444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.47  E-value=1.6e-10  Score=94.54  Aligned_cols=183  Identities=12%  Similarity=0.061  Sum_probs=124.9

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc----ccCCEEEEEECCCCCEEEEEeC------CCcEEE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG----HKDSVSSLAFSMDGQLLASGGL------DGLVQI  133 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~------dg~i~i  133 (290)
                      ...+.+++|+| ++.++++. . ..|.+|+..+++.......    ....+.+++++|+|+++++...      .+.|..
T Consensus        89 ~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~  165 (326)
T 2ghs_A           89 PFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  165 (326)
T ss_dssp             SSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence            46799999999 66666654 3 4499999887765432221    1235889999999997665432      245666


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe-eCCCeEEEEECC--cc-c-----EEEeeecCCCCeEEEEEcCCCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNAD--RA-A-----YLNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~--~~-~-----~~~~~~~~~~~i~~~~~~~~~~  204 (290)
                      ++  +++.. .+.........++|+|+++.|+.+ +.++.|.+|++.  ++ .     .+..+......+..+++.++|+
T Consensus       166 ~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~  242 (326)
T 2ghs_A          166 VA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH  242 (326)
T ss_dssp             EE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred             Ee--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC
Confidence            66  45433 332233457889999999876555 457899999986  44 2     1222323345678899999998


Q ss_pred             EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEc-CCCCEEEEEeC
Q 022910          205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGSK  256 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~  256 (290)
                      ++++....+.|.+|+. +++.+..+..   ....+++++|+ |++..|++++.
T Consensus       243 lwva~~~~~~v~~~d~-~g~~~~~i~~---~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          243 IWNARWGEGAVDRYDT-DGNHIARYEV---PGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEEETTTEEEEECT-TCCEEEEEEC---SCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEEEEeCCCEEEEECC-CCCEEEEEEC---CCCCcEEEEEecCCCCEEEEEec
Confidence            8887777789999998 5666666654   34569999998 88776655544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.45  E-value=2.6e-11  Score=108.92  Aligned_cols=188  Identities=14%  Similarity=0.142  Sum_probs=134.9

Q ss_pred             CCcEEEEEccCCeeeeeeccc-------------------------------cCCEEEEEECCCCCEEEEEeCCCc----
Q 022910           86 DDKGFFWRINQGDWASEIQGH-------------------------------KDSVSSLAFSMDGQLLASGGLDGL----  130 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~-------------------------------~~~i~~~~~~~~~~~l~~~~~dg~----  130 (290)
                      +|.|+.||..+++.+..+...                               ...-..+++.|+...++.++.++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            689999999999988765410                               001125778888889998887763    


Q ss_pred             ---------------EEEEcCCCCceEEEEecC--C-------CCEEEEEEcCCCC---EEEEeeCCCeEEEEECCcccE
Q 022910          131 ---------------VQIWDPSSGNLKCTLEGP--G-------GGVEWVSWHPRGH---IVLAGSEDSTVWMWNADRAAY  183 (290)
Q Consensus       131 ---------------i~i~d~~~~~~~~~~~~~--~-------~~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~  183 (290)
                                     |..+|..+++.+-.++..  .       .++.......+|+   .++.++.+|.++++|.++++.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           999999999998877642  1       1222222223554   788999999999999999988


Q ss_pred             EEeeecCCC---------------------------------------CeEEEEEcCCCCEEEEEeC-------------
Q 022910          184 LNMFSGHGS---------------------------------------SVTCGDFTPDGKTICTGSD-------------  211 (290)
Q Consensus       184 ~~~~~~~~~---------------------------------------~i~~~~~~~~~~~l~~~~~-------------  211 (290)
                      +........                                       .-..++|+|+..++++...             
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence            743321110                                       0112678888888877532             


Q ss_pred             --------------------------------CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCc
Q 022910          212 --------------------------------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS  259 (290)
Q Consensus       212 --------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  259 (290)
                                                      +|.|+.||+.+++.+..+...    ..+..-.+...+.++++|+.||.
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~gt~dg~  497 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV----TIFNGGTLSTAGNLVFEGSADGR  497 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----CCccCccceECCCEEEEECCCCc
Confidence                                            378999999999988877642    22223345556789999999999


Q ss_pred             EEEEEcCCCcEEEEEccC
Q 022910          260 VHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       260 i~~wd~~~~~~~~~~~~~  277 (290)
                      |+.||.++|+.+.++...
T Consensus       498 l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          498 VIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             EEEEETTTCCEEEEEECS
T ss_pred             EEEEECCCCccceeeeCC
Confidence            999999999999998754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=3.5e-11  Score=99.20  Aligned_cols=199  Identities=11%  Similarity=0.036  Sum_probs=136.4

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecC-----CCcEEEEEccCCeeeeeecc------ccCCEEEEEECCCCCEE-EEEe---
Q 022910           62 GHSDEVYSVACSPTDATLVATGGG-----DDKGFFWRINQGDWASEIQG------HKDSVSSLAFSMDGQLL-ASGG---  126 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l-~~~~---  126 (290)
                      +|-..+.++++.+ ++.++++...     .+.|.+||+.+++.+..+..      +...+..+++++++..+ ++..   
T Consensus        64 ~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           64 ITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             CCCSCEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred             cceeEeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence            5667899999999 5666665533     57899999999887665542      22356889999865554 4444   


Q ss_pred             CCCcEEEEcCCCCceEEEEecC-----------------------------CCCEEEEEEcCCCCEEEEeeCCC-eEEEE
Q 022910          127 LDGLVQIWDPSSGNLKCTLEGP-----------------------------GGGVEWVSWHPRGHIVLAGSEDS-TVWMW  176 (290)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~-----------------------------~~~i~~i~~~~~~~~l~~~~~dg-~i~i~  176 (290)
                      .++.|.+||+.+++....+..|                             ...+..|+|+|+++.|+++...+ .|+.+
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence            5789999999888766554321                             02368899999999888887665 55555


Q ss_pred             ECCc---c-----cEEE--eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC
Q 022910          177 NADR---A-----AYLN--MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (290)
Q Consensus       177 d~~~---~-----~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (290)
                      +...   +     +...  ...++......++++++|+++++....+.|.+||..+++....... . ....+++++|.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~-~~~~p~~va~~~  300 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-E-KLSWTDSFNFGS  300 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-G-GGSCEEEEEECT
T ss_pred             EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-C-ceecCCeeEECC
Confidence            5321   1     0000  1112334566789999999999998899999999866664333322 1 345689999999


Q ss_pred             CCCEEEEEeCCCcEEEE
Q 022910          247 DSTLALSGSKDGSVHMV  263 (290)
Q Consensus       247 ~~~~l~~~~~dg~i~~w  263 (290)
                      ++.++++.+..+.+.+|
T Consensus       301 ~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          301 DGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             TSCEEEEECCGGGSGGG
T ss_pred             CCcEEEEeCcccccccc
Confidence            99888887765554333

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.42  E-value=3.4e-11  Score=107.92  Aligned_cols=188  Identities=12%  Similarity=0.180  Sum_probs=138.2

Q ss_pred             CCcEEEEEccCCeeeeeeccccC--------------------------------CEEEEEECCCCCEEEEEeCCC----
Q 022910           86 DDKGFFWRINQGDWASEIQGHKD--------------------------------SVSSLAFSMDGQLLASGGLDG----  129 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~--------------------------------~i~~~~~~~~~~~l~~~~~dg----  129 (290)
                      +|.|+.||..+++.+..+.....                                ....++++|++..++.++.++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            68999999999998876643211                                112567888888888887654    


Q ss_pred             ---------------cEEEEcCCCCceEEEEecCC---------CCEEEEEEcCCC---CEEEEeeCCCeEEEEECCccc
Q 022910          130 ---------------LVQIWDPSSGNLKCTLEGPG---------GGVEWVSWHPRG---HIVLAGSEDSTVWMWNADRAA  182 (290)
Q Consensus       130 ---------------~i~i~d~~~~~~~~~~~~~~---------~~i~~i~~~~~~---~~l~~~~~dg~i~i~d~~~~~  182 (290)
                                     .|..+|..+++.+..++...         .....+....+|   ..++.++.+|.|+++|.++++
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           59999999999987776421         122223333467   689999999999999999999


Q ss_pred             EEEeeecCC-----------CCe------------------------EEEEEcCCCCEEEEEeC----------------
Q 022910          183 YLNMFSGHG-----------SSV------------------------TCGDFTPDGKTICTGSD----------------  211 (290)
Q Consensus       183 ~~~~~~~~~-----------~~i------------------------~~~~~~~~~~~l~~~~~----------------  211 (290)
                      .+..+....           .++                        ..++++|+..++++...                
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~  428 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence            876654221           111                        14688998888877543                


Q ss_pred             ---------------------------CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910          212 ---------------------------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       212 ---------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  264 (290)
                                                 .|.|..||+.+++.+..+..    ...+....+...+.++++++.+|.+++||
T Consensus       429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----VSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----CCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence                                       27899999999998887763    33334444556778888999999999999


Q ss_pred             cCCCcEEEEEccC
Q 022910          265 ITTGKVVSSLVSH  277 (290)
Q Consensus       265 ~~~~~~~~~~~~~  277 (290)
                      +.+++++.++...
T Consensus       505 ~~tG~~lw~~~~~  517 (677)
T 1kb0_A          505 AATGEKLWEAPTG  517 (677)
T ss_dssp             TTTCCEEEEEECS
T ss_pred             CCCCceeeeeeCC
Confidence            9999999999754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.42  E-value=5e-11  Score=93.63  Aligned_cols=195  Identities=9%  Similarity=0.035  Sum_probs=139.0

Q ss_pred             EEEEEECCCCCcEEEEecC--CCcEEEEEccCCeeeeeeccccC-CEEEEEECCCCCEEEEE-eCCCcEEEEcCCCCceE
Q 022910           67 VYSVACSPTDATLVATGGG--DDKGFFWRINQGDWASEIQGHKD-SVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~  142 (290)
                      ...++|+| ++.++++.+.  ++.|+++|+.+++.+..+..... ....+++.  ++.|+.+ -.++.+.++|..+.+.+
T Consensus        23 ~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           23 TQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             EEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             cccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            58999998 4666665543  57999999999998887652221 22345554  4455444 45789999999999999


Q ss_pred             EEEecC-CCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCC-----CCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910          143 CTLEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-----SSVTCGDFTPDGKTICTGSDDATLR  216 (290)
Q Consensus       143 ~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~  216 (290)
                      .++... ..   ...++++++.++++..++.|.++|..+.+.+..+....     ..+..+.|. ++..++....++.|.
T Consensus       100 ~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~  175 (266)
T 2iwa_A          100 KNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIA  175 (266)
T ss_dssp             EEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEE
Confidence            888643 22   23355577777777778999999999988887776321     236778888 665555555688999


Q ss_pred             EEcCCCCeeeEEEeCCCC----------cccCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 022910          217 VWNPKSGENIHVIRGHPY----------HTEGLTCLTISADST-LALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       217 i~d~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~  268 (290)
                      +.|..+++.+..+.....          .....+.++|+|+++ +++++...+.|++.++...
T Consensus       176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            999999999888874210          113568999999876 5555666788988887653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.36  E-value=4.4e-10  Score=87.29  Aligned_cols=191  Identities=11%  Similarity=0.102  Sum_probs=133.1

Q ss_pred             eeeccCCcC--EEEEEECCCCCcEEEEecCCC--cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEE
Q 022910           58 HIFSGHSDE--VYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQ  132 (290)
Q Consensus        58 ~~~~~h~~~--v~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~  132 (290)
                      ..+ .|...  ...|.|+  ++.++.+.+.+|  .|+++|+.+++.+..+.... ........+.++.|+.. -.++.+.
T Consensus        35 ~~~-phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           35 HSY-PHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEE-ECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEe-cCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEE
Confidence            344 44444  3788898  346666766665  89999999999888876433 23232222245555554 4588999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC--C---CCeEEEEEcCCCCEEE
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--G---SSVTCGDFTPDGKTIC  207 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~i~~~~~~~~~~~l~  207 (290)
                      +||..+.+.+.++...... ..+  ++++..|+.+...+.|.++|..+.+.+.++...  .   ..+..+.|. +|..++
T Consensus       111 v~D~~t~~~~~ti~~~~eG-~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya  186 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDGEG-WGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA  186 (262)
T ss_dssp             EEETTTCCEEEEEECSSCC-CCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEECccCcEEEEEECCCCc-eEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence            9999999999998854322 233  356777777777889999999999888776642  2   334557776 676555


Q ss_pred             EEeCCCeEEEEcCCCCeeeEEEeCCCC---------cccCeEEEEEcCCCCEEEEEeC
Q 022910          208 TGSDDATLRVWNPKSGENIHVIRGHPY---------HTEGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~  256 (290)
                      ..-.+..|.+.|.++++.+..+.....         .....+.++|+|+++.|++.+.
T Consensus       187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            555788999999999999888875321         1245799999998776666654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.36  E-value=5.3e-10  Score=87.80  Aligned_cols=187  Identities=12%  Similarity=0.123  Sum_probs=131.3

Q ss_pred             eeeeeeccccC--CEEEEEECCCCCEEEEEeC--CCcEEEEcCCCCceEEEEecCCC-CEEEEEEcCCCCEEE-EeeCCC
Q 022910           98 DWASEIQGHKD--SVSSLAFSMDGQLLASGGL--DGLVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVL-AGSEDS  171 (290)
Q Consensus        98 ~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~-~~~~dg  171 (290)
                      +.+.++. |..  ....+.|++++.++++.+.  ++.|+++|+.+++.+..+..... ....+++.  +..|+ +.-.++
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence            3455554 443  3689999998654444443  58999999999999988764332 23345554  44444 445678


Q ss_pred             eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC--cccCeEEEEEcCCCC
Q 022910          172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY--HTEGLTCLTISADST  249 (290)
Q Consensus       172 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~  249 (290)
                      .+.++|..+.+.+.++......  ...++++++.++++..++.|.++|..+.+.+..+.....  .-..++.+.|. ++.
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~  163 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE  163 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence            9999999999988888643111  233555777777777889999999999988877764211  11246788888 676


Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEEEccC-------------CCcEEEEEEecCC
Q 022910          250 LALSGSKDGSVHMVNITTGKVVSSLVSH-------------TDSIECIGFSRSE  290 (290)
Q Consensus       250 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~i~~s~d~  290 (290)
                      .++....++.|.+.|..+++.+..+...             .....+|+|+|++
T Consensus       164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~  217 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN  217 (266)
T ss_dssp             EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred             EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence            6655556789999999999999998642             1356899999875

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.35  E-value=2.3e-11  Score=104.92  Aligned_cols=199  Identities=12%  Similarity=0.073  Sum_probs=146.2

Q ss_pred             CCCcEEEEecCCCcEEEEEccCCeeeeeecc-ccCCEEEEEE-C-CCCCEEEEEe------------------CCCcEEE
Q 022910           75 TDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAF-S-MDGQLLASGG------------------LDGLVQI  133 (290)
Q Consensus        75 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~-~-~~~~~l~~~~------------------~dg~i~i  133 (290)
                      ++..++++...++.|.+.|+.+.+....+.- .......+++ . |+++++++++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            3455666667778899999999998774432 2345788888 5 9999998884                  2468999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCC--------------------------------------eEEE
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS--------------------------------------TVWM  175 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--------------------------------------~i~i  175 (290)
                      .|..+.+...++.... ....++++|+|+++++++.+.                                      .|.+
T Consensus       180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            9999999888877543 456788999999999888553                                      3667


Q ss_pred             EECCc--ccE-EEeeecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEcCCCCe------------eeEEEeCCCCcccCe
Q 022910          176 WNADR--AAY-LNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGE------------NIHVIRGHPYHTEGL  239 (290)
Q Consensus       176 ~d~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------~~~~~~~~~~~~~~v  239 (290)
                      .|.++  ++. +..+.. .....++.++|+|+++++++ .+.+|.++|+.+.+            ....+.    .....
T Consensus       259 ID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~----vG~gP  333 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE----LGLGP  333 (595)
T ss_dssp             EECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB----CCSCE
T ss_pred             EeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC----CCCCc
Confidence            77776  333 334432 33557889999999887665 57899999998653            122222    45678


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCC----------CcEEEEEccCCC
Q 022910          240 TCLTISADSTLALSGSKDGSVHMVNITT----------GKVVSSLVSHTD  279 (290)
Q Consensus       240 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~----------~~~~~~~~~~~~  279 (290)
                      ..++|+|+|..+++.-.+++|.+|++.+          .+.+.++..|..
T Consensus       334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq  383 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ  383 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC
T ss_pred             ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc
Confidence            8999999995555666799999999977          678888887654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.34  E-value=5.5e-10  Score=86.76  Aligned_cols=185  Identities=15%  Similarity=0.180  Sum_probs=129.8

Q ss_pred             eeeeeccccCC--EEEEEECCCCCEEEEEeCCC--cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee-CCCeE
Q 022910           99 WASEIQGHKDS--VSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTV  173 (290)
Q Consensus        99 ~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i  173 (290)
                      .+.++. |...  ...+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+..... .......+.+..|+... .++.+
T Consensus        33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEE
Confidence            445554 5433  4788898 666666666665  899999999999988875443 33322223344555444 58899


Q ss_pred             EEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC-C-cccCeEEEEEcCCCCEE
Q 022910          174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP-Y-HTEGLTCLTISADSTLA  251 (290)
Q Consensus       174 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l  251 (290)
                      .+||..+.+.+.++...... ..++  +++..|+.+..++.|.++|..+.+.+..+.... . .-..++.+.|. +|+++
T Consensus       110 ~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly  185 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF  185 (262)
T ss_dssp             EEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence            99999999999988754322 3343  567777777778899999999999888776421 0 11345567776 67666


Q ss_pred             EEEeCCCcEEEEEcCCCcEEEEEccC------------CCcEEEEEEecCC
Q 022910          252 LSGSKDGSVHMVNITTGKVVSSLVSH------------TDSIECIGFSRSE  290 (290)
Q Consensus       252 ~~~~~dg~i~~wd~~~~~~~~~~~~~------------~~~v~~i~~s~d~  290 (290)
                      +..-.++.|.+.|..+++.+..+...            ....++|+|+|++
T Consensus       186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~  236 (262)
T 3nol_A          186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH  236 (262)
T ss_dssp             EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT
T ss_pred             EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC
Confidence            65556889999999999999988642            1356899999874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.31  E-value=4.4e-10  Score=96.98  Aligned_cols=207  Identities=14%  Similarity=0.067  Sum_probs=149.8

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeecc---------------------------------c------cCCEEEEEECC-
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQG---------------------------------H------KDSVSSLAFSM-  117 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~---------------------------------~------~~~i~~~~~~~-  117 (290)
                      +.|.+|+..|.++|+-+.+++.+..+..                                 +      .+.......|. 
T Consensus        16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t   95 (595)
T 1fwx_A           16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT   95 (595)
T ss_dssp             EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEE
T ss_pred             EEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCC
Confidence            3577899999999999988876665410                                 0      11122344443 


Q ss_pred             ----CCCEEEEEeC-CCcEEEEcCCCCceEEEEecC-CCCEEEEEE-c-CCCCEEEEee------------------CCC
Q 022910          118 ----DGQLLASGGL-DGLVQIWDPSSGNLKCTLEGP-GGGVEWVSW-H-PRGHIVLAGS------------------EDS  171 (290)
Q Consensus       118 ----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-~~~i~~i~~-~-~~~~~l~~~~------------------~dg  171 (290)
                          +|+++++... ++.|.+.|+.+.+....+... ...+..+++ + |++.++++++                  .++
T Consensus        96 ~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A           96 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             CCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence                7777777654 567999999999988866543 345888888 5 8999998885                  245


Q ss_pred             eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------
Q 022910          172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA--------------------------------------  213 (290)
Q Consensus       172 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------------------------------  213 (290)
                      .+.++|..+.+...++.... ....++++|+|+++++.+.+.                                      
T Consensus       176 ~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             eEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            79999999998888877433 467788999999999888553                                      


Q ss_pred             eEEEEcCCC--Cee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCc------------EEEEEccC
Q 022910          214 TLRVWNPKS--GEN-IHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGK------------VVSSLVSH  277 (290)
Q Consensus       214 ~i~i~d~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~------------~~~~~~~~  277 (290)
                      .|.|.|.++  ++. +..+.    ......++.++|||+++++++ .+.+|.++|+.+.+            .+..+.. 
T Consensus       255 ~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-  329 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-  329 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-
T ss_pred             cEEEEeCcccCCceeEEEEe----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-
Confidence            367777776  444 34444    234567789999999887776 47899999998653            4555543 


Q ss_pred             CCcEEEEEEecCC
Q 022910          278 TDSIECIGFSRSE  290 (290)
Q Consensus       278 ~~~v~~i~~s~d~  290 (290)
                      ....+.++|+|+|
T Consensus       330 G~gP~h~aF~~dG  342 (595)
T 1fwx_A          330 GLGPLHTAFDGRG  342 (595)
T ss_dssp             CSCEEEEEECTTS
T ss_pred             CCCcceEEECCCC
Confidence            4578999999987

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.31  E-value=9.5e-10  Score=85.45  Aligned_cols=180  Identities=11%  Similarity=0.051  Sum_probs=129.0

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEE--EEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS--SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (290)
                      ...|.|+  ++.++.+.+.+|.|+++|+.+++.+..+ -. ....  .+++.. ++.+++.-.++.+.+||..+.+.+.+
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence            4688887  4677888888899999999999988776 22 2332  355532 33444445689999999999999999


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC--C---CCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--G---SSVTCGDFTPDGKTICTGSDDATLRVWN  219 (290)
Q Consensus       145 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~i~~~~~~~~~~~l~~~~~dg~i~i~d  219 (290)
                      +..... -..++  +++..|+.+..++.|.++|..+.+.+.++...  .   ..+..+.|. +|..++.......|.+.|
T Consensus       132 i~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID  207 (268)
T 3nok_A          132 TRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID  207 (268)
T ss_dssp             EECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred             EeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence            885433 23444  46778888777899999999999888777642  2   244667777 666555555688999999


Q ss_pred             CCCCeeeEEEeCCC----------CcccCeEEEEEcCCCCEEEEEe
Q 022910          220 PKSGENIHVIRGHP----------YHTEGLTCLTISADSTLALSGS  255 (290)
Q Consensus       220 ~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~  255 (290)
                      .++++.+..+....          ......+.|+++|+++.|++.+
T Consensus       208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            99999988876431          1224679999999765554444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.31  E-value=1.2e-09  Score=91.33  Aligned_cols=188  Identities=14%  Similarity=0.133  Sum_probs=129.8

Q ss_pred             CEEEEEECCCCCcEEEEecCC------CcEEEEEccCCeeeeeeccccC---CEEEEEECCCCCEEEEEe----------
Q 022910           66 EVYSVACSPTDATLVATGGGD------DKGFFWRINQGDWASEIQGHKD---SVSSLAFSMDGQLLASGG----------  126 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~----------  126 (290)
                      .-..+...| ++ +++++..+      |.|.++|..+.+.+.++.....   --..+.|+|+++.+++..          
T Consensus       139 ~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g  216 (462)
T 2ece_A          139 RLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDG  216 (462)
T ss_dssp             EEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTC
T ss_pred             cccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccc
Confidence            345667888 55 66665444      7899999999998888863322   234578899999888874          


Q ss_pred             ---------CCCcEEEEcCCCCceEEEEecC-C-CCEEEEEE--cCCCCEEEEee------CCCeEEEEECCcccE--EE
Q 022910          127 ---------LDGLVQIWDPSSGNLKCTLEGP-G-GGVEWVSW--HPRGHIVLAGS------EDSTVWMWNADRAAY--LN  185 (290)
Q Consensus       127 ---------~dg~i~i~d~~~~~~~~~~~~~-~-~~i~~i~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~--~~  185 (290)
                               ...+|.+||+.+++.+.++... . .....+.|  +|+++++++++      .+++|.+|....++.  .+
T Consensus       217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~  296 (462)
T 2ece_A          217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK  296 (462)
T ss_dssp             CCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred             cchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence                     3689999999999888887753 1 23455656  99999888877      456787766544321  11


Q ss_pred             ee--ec----------------CCCCeEEEEEcCCCCEEEEEeC-CCeEEEEcCCC---CeeeEEEeCCC----------
Q 022910          186 MF--SG----------------HGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKS---GENIHVIRGHP----------  233 (290)
Q Consensus       186 ~~--~~----------------~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~---~~~~~~~~~~~----------  233 (290)
                      .+  ..                ....+..|.++|++++|+++.. .+.|.+||+..   .+.+..+....          
T Consensus       297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G  376 (462)
T 2ece_A          297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG  376 (462)
T ss_dssp             EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS
T ss_pred             EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc
Confidence            11  00                0245788999999999987765 68999999853   34444444310          


Q ss_pred             -CcccCeEEEEEcCCCCEEEEEe
Q 022910          234 -YHTEGLTCLTISADSTLALSGS  255 (290)
Q Consensus       234 -~~~~~v~~~~~~~~~~~l~~~~  255 (290)
                       ........+.++|+|++|+++.
T Consensus       377 ~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          377 HKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ccCCCCCCEEEEcCCCCEEEEEc
Confidence             0011357899999999999998

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.29  E-value=3.8e-10  Score=92.08  Aligned_cols=197  Identities=18%  Similarity=0.145  Sum_probs=137.2

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEc
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH  158 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  158 (290)
                      .+..++.++.|..++.. ++.......+...+.++...+++. ++.++.++.|..++.. ++....+......+.++...
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d  185 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG  185 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc
Confidence            45567778999999988 776666655555566677776666 6667778999999998 88777776655667777787


Q ss_pred             CCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccC
Q 022910          159 PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG  238 (290)
Q Consensus       159 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  238 (290)
                      +++.+++..   +.|..|| .+++.+..+......+.++...+++. |.+++.++.|..++. +++.+..+..   ....
T Consensus       186 ~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~---~~~~  256 (330)
T 3hxj_A          186 KDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKT---GKRI  256 (330)
T ss_dssp             TTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEEC---SSCC
T ss_pred             CCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeC---CCCc
Confidence            777755544   7899999 67776666665556678888888775 556667888999985 5555555553   2222


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       239 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      +..+.+.+++ .|.+++.+|.|..+|. +++.+..+......+.++...++
T Consensus       257 ~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~  305 (330)
T 3hxj_A          257 ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDEN  305 (330)
T ss_dssp             CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTT
T ss_pred             cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCC
Confidence            3345555555 5667888889999995 78877777654455555555443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.29  E-value=3.9e-09  Score=81.29  Aligned_cols=192  Identities=9%  Similarity=0.073  Sum_probs=131.9

Q ss_pred             eeeeccCCc--CEEEEEECCCCCcEEEEecCC--CcEEEEEccCCeeeeeeccccCC-EEEEEECCCCCEEEEEeCCCcE
Q 022910           57 THIFSGHSD--EVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGHKDS-VSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        57 ~~~~~~h~~--~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      +..+ .|..  -...|.|++  +.++.+.+..  ..|+.+|+.+++.+..+...... --.+++. .++.++..-.++.+
T Consensus        12 ~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           12 VKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEE
T ss_pred             EEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEE
Confidence            3444 4543  356899986  4566666665  48999999999988877633321 1233443 23344444568999


Q ss_pred             EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCC-----CCeEEEEEcCCCCEE
Q 022910          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-----SSVTCGDFTPDGKTI  206 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l  206 (290)
                      .+||..+.+.+.++...... ..++  +++..|+.+..++.|.++|..+.+.+.++....     ..+..+.|. +|+.+
T Consensus        88 ~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly  163 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL  163 (243)
T ss_dssp             EEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence            99999999999998864432 3444  467777777778999999999998887776421     345667765 56655


Q ss_pred             EEEeCCCeEEEEcCCCCeeeEEEeCCCC----------cccCeEEEEEcCCCCEEEEEeC
Q 022910          207 CTGSDDATLRVWNPKSGENIHVIRGHPY----------HTEGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~  256 (290)
                      +....+..|.+.|.++++.+..+.....          .....+.++++|+++.|++.+.
T Consensus       164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            5555688999999999999888764311          2246799999997665555554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.26  E-value=2.7e-10  Score=95.80  Aligned_cols=112  Identities=13%  Similarity=0.007  Sum_probs=89.1

Q ss_pred             CCCCEEEEEeCC-----CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee----------CCCeEEEEECCcc
Q 022910          117 MDGQLLASGGLD-----GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS----------EDSTVWMWNADRA  181 (290)
Q Consensus       117 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~dg~i~i~d~~~~  181 (290)
                      ++++++++....     +.|.++|+.+++.+.++.....+  .++++|++++++++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            466766666542     69999999999999999876665  899999999888876          3678999999999


Q ss_pred             cEEEeeecC-------CCCeEEEEEcCCCCEEEEEeC--CCeEEEEcCCCCeeeEEEe
Q 022910          182 AYLNMFSGH-------GSSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIR  230 (290)
Q Consensus       182 ~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~  230 (290)
                      +.+..+...       ......+.|+|+|++|+++..  ++.|.++|+.+++.+..+.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence            988877532       234567899999999998874  5789999999887765543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.25  E-value=3.1e-09  Score=82.59  Aligned_cols=185  Identities=12%  Similarity=0.082  Sum_probs=130.8

Q ss_pred             eeeeeeccccC--CEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCC-EEEEEEcCCCCEEEEeeCCCeEE
Q 022910           98 DWASEIQGHKD--SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-VEWVSWHPRGHIVLAGSEDSTVW  174 (290)
Q Consensus        98 ~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~  174 (290)
                      +.+..+. |..  -...+.|+ ++.++++.+.+|.|+++|+.+++.+..+ ..... -..+++.. ++++++.-.++.+.
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEE
T ss_pred             EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEE
Confidence            3444553 443  34788887 4566777788889999999999998887 33321 23355542 34444455689999


Q ss_pred             EEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC--cccCeEEEEEcCCCCEEE
Q 022910          175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY--HTEGLTCLTISADSTLAL  252 (290)
Q Consensus       175 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~  252 (290)
                      +||..+.+.+.++..... -..++  ++++.|+.+..++.|.++|..+.+.+..+.....  .-..++.+.|. +|.+++
T Consensus       120 V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya  195 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA  195 (268)
T ss_dssp             EEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence            999999999998875433 23444  4678888887899999999999998887764221  11245677777 676665


Q ss_pred             EEeCCCcEEEEEcCCCcEEEEEccC-------------CCcEEEEEEecCC
Q 022910          253 SGSKDGSVHMVNITTGKVVSSLVSH-------------TDSIECIGFSRSE  290 (290)
Q Consensus       253 ~~~~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~i~~s~d~  290 (290)
                      ..-....|.+.|..+++.+..+...             ....++|||+|++
T Consensus       196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~  246 (268)
T 3nok_A          196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS  246 (268)
T ss_dssp             EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT
T ss_pred             EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC
Confidence            5556889999999999999888632             1367899999864

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.25  E-value=1.2e-09  Score=98.59  Aligned_cols=195  Identities=10%  Similarity=0.071  Sum_probs=127.8

Q ss_pred             EEEEECCCCCcEEEEecCC-------------CcEEEEEccCCe----eeeeecc-ccCCEEEEEECCCCCEEEEEeC--
Q 022910           68 YSVACSPTDATLVATGGGD-------------DKGFFWRINQGD----WASEIQG-HKDSVSSLAFSMDGQLLASGGL--  127 (290)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~d-------------g~i~iw~~~~~~----~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~--  127 (290)
                      ..++|+ ++..++++ +.+             ..|++|++.++.    .+..... |...+..+.|+|++++|+....  
T Consensus       178 ~~~~Ws-Dg~~l~y~-~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~  255 (693)
T 3iuj_A          178 SGISWL-GNEGFFYS-SYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS  255 (693)
T ss_dssp             CCCEEE-TTTEEEEE-ESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred             ccEEEe-CCCEEEEE-EecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence            467888 56555544 444             349999987754    2333333 4556788999999998765432  


Q ss_pred             --CCcEEEEcCCCCc-eEEEEecCCCCEEEEEEcCCCCEEEEeeC----CCeEEEEECCcccE--EEeeecCCCCeEEEE
Q 022910          128 --DGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSE----DSTVWMWNADRAAY--LNMFSGHGSSVTCGD  198 (290)
Q Consensus       128 --dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~  198 (290)
                        ...|+++++.++. ....+..+....... |++++..|+..+.    .+.|..+++.++..  .+.+..+...+.  .
T Consensus       256 ~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~  332 (693)
T 3iuj_A          256 TSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--T  332 (693)
T ss_dssp             SSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--E
T ss_pred             CCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--E
Confidence              3589999998763 344555555555554 5666665554443    36799999987653  244555555554  8


Q ss_pred             EcCCCCEEEEEeC-CC--eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCcE
Q 022910          199 FTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD----GSVHMVNITTGKV  270 (290)
Q Consensus       199 ~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~  270 (290)
                      |+++++.|+.... ++  .|++|++..+. ...+...  ....+..+.+++++..|+....+    +.|+.||+.+++.
T Consensus       333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p--~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          333 VHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALP--GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCS--SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecC--CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            8898888876655 43  68999987543 3444321  33457777888888766655444    7899999987753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.24  E-value=3.8e-08  Score=81.13  Aligned_cols=219  Identities=11%  Similarity=-0.010  Sum_probs=142.4

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~  142 (290)
                      ...+..++|.+..+.++++-...+.|..+++........+.........+++.+.+..| ++-...+.|.+.++......
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence            34578999998677777777778899999988765444333223345788898755544 44455688999998765544


Q ss_pred             EEEecCCCCEEEEEEcCCCCEEEEee-CC-CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEc
Q 022910          143 CTLEGPGGGVEWVSWHPRGHIVLAGS-ED-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWN  219 (290)
Q Consensus       143 ~~~~~~~~~i~~i~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d  219 (290)
                      ..+.........++++|.+..|+.+. .. +.|..+++............-.....|+++|++..|+.+ ...+.|..++
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            44444445688999999666555544 34 789999887544333333334467899999866666544 4567899999


Q ss_pred             CCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEE
Q 022910          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF  286 (290)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~  286 (290)
                      +........+..   .......+++. .+.++++-...+.|..++..+|+.+..+........+|++
T Consensus       232 ~dG~~~~~~~~~---~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v  294 (349)
T 3v64_C          232 LDGSHRKAVISQ---GLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT  294 (349)
T ss_dssp             TTSCSCEEEECS---SCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             CCCCceEEEEeC---CCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence            875443333332   23456677773 4556666667788999997777766666543333444443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.23  E-value=2.2e-07  Score=78.08  Aligned_cols=222  Identities=9%  Similarity=0.017  Sum_probs=145.6

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----eeeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCC
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPS  137 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~  137 (290)
                      ....+.+|+|.+.++.++++-...+.|+.+++...    .....+.........+++.+.+. ++++-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34567899999867777777777888988888652    22233332345678899987544 44454567899999988


Q ss_pred             CCceEEEEecCCCCEEEEEEcCCCCEEEEeeC--CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCCCe
Q 022910          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDAT  214 (290)
Q Consensus       138 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~  214 (290)
                      .......+.........|++.|.+.+|+.+..  .+.|...++............-.....|+++|.+..|+.+ ...+.
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~  269 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  269 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence            66655555545556899999997666665553  4789999987654333333334577999999877766655 45678


Q ss_pred             EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEE
Q 022910          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF  286 (290)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~  286 (290)
                      |..+|+........+.... .......+++. .+.++++-...+.|..++..+|+.+..+........+|..
T Consensus       270 I~~~d~dG~~~~~~~~~~~-~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v  339 (400)
T 3p5b_L          270 ISSIDVNGGNRKTILEDEK-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL  339 (400)
T ss_dssp             EEEEETTSCCCEEEEECSS-TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred             EEEEeCCCCccEEEEeCCC-CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence            9999987544433333211 22345567763 3456666667789999998888877777654444555543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.23  E-value=4.1e-08  Score=82.13  Aligned_cols=219  Identities=11%  Similarity=-0.010  Sum_probs=143.8

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~  142 (290)
                      ...+..++|.+.++.++++-...+.|..+++........+.........+++.+.+..| ++-...+.|.+.++......
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            34577899998677788787778899999988765444333223345678888765554 44455678999988765544


Q ss_pred             EEEecCCCCEEEEEEcCCCCEEEEeeC-C-CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE-EeCCCeEEEEc
Q 022910          143 CTLEGPGGGVEWVSWHPRGHIVLAGSE-D-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT-GSDDATLRVWN  219 (290)
Q Consensus       143 ~~~~~~~~~i~~i~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d  219 (290)
                      ..+.........++++|.+..|+.+.. . +.|..+++............-.....|+|+|++..|+. -+..+.|..++
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            444444456899999987666655543 3 68999988755433333333445789999986666654 45577899999


Q ss_pred             CCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEE
Q 022910          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF  286 (290)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~  286 (290)
                      +........+..   .......+++. .+.++++-...+.|..++..+++.+..+........+|++
T Consensus       275 ~dG~~~~~~~~~---~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          275 LDGSHRKAVISQ---GLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT  337 (386)
T ss_dssp             TTSCSCEEEECS---SCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             CCCCeeEEEEEC---CCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence            875443333332   23456777773 4566666667889999997777776666543344444444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.23  E-value=7.6e-10  Score=91.58  Aligned_cols=150  Identities=14%  Similarity=0.049  Sum_probs=113.7

Q ss_pred             EEECCCCCEEEEEeC-----CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee----------CCCeEEEEE
Q 022910          113 LAFSMDGQLLASGGL-----DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS----------EDSTVWMWN  177 (290)
Q Consensus       113 ~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~dg~i~i~d  177 (290)
                      ....|+++.+++...     ++.|.++|..+++.+..+.....+ . ++++|++++++++.          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            345689998888765     679999999999999998866665 4 99999999888776          357899999


Q ss_pred             CCcccEEEeeecCC-------CCeEEEEEcCCCCEEEEEeC--CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCC
Q 022910          178 ADRAAYLNMFSGHG-------SSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS  248 (290)
Q Consensus       178 ~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  248 (290)
                      ..+.+.+..+....       .....+.|+|+|++++++..  ++.|.++|+.+++.+..+...    . . ...+....
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~----g-~-~~~~P~g~  189 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP----D-C-YHIFPTAP  189 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----S-E-EEEEEEET
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC----C-c-ceeecCCC
Confidence            99999888775322       24567899999999998864  689999999999998888642    1 1 12222234


Q ss_pred             CEEEEEeCCCcEEEEEcCC-CcE
Q 022910          249 TLALSGSKDGSVHMVNITT-GKV  270 (290)
Q Consensus       249 ~~l~~~~~dg~i~~wd~~~-~~~  270 (290)
                      +.+++.+.||.+.+.++.+ ++.
T Consensus       190 ~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          190 DTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCC
T ss_pred             ceeEEECCCCCEEEEECCCCCeE
Confidence            5566677777777777765 554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.21  E-value=4.5e-08  Score=76.38  Aligned_cols=205  Identities=13%  Similarity=0.123  Sum_probs=138.0

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc-ccCCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (290)
                      +.+.+-.+.+..++|+|+++.++++...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            34556667899999999767788778889999999988 777776642 2256788999988877676656788999987


Q ss_pred             CCCce---EEEEe------cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc---ccEEEeee-------cCCCCeEEE
Q 022910          137 SSGNL---KCTLE------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---AAYLNMFS-------GHGSSVTCG  197 (290)
Q Consensus       137 ~~~~~---~~~~~------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~-------~~~~~i~~~  197 (290)
                      .....   +....      ........++|+|.++.|+++.......+|.+..   ...+..+.       .....+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65542   22221      1233468999999988777777655555554431   11112111       123457899


Q ss_pred             EEcCC-CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCc------ccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          198 DFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYH------TEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       198 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      +++|. +.+++.+.....|.++|.. ++.+..+.-....      -...-.|+|.++|+++++ +.-+.++++.-
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            99994 4556667778889999976 5555555433211      236789999999985554 66677777654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.20  E-value=2.2e-07  Score=75.48  Aligned_cols=211  Identities=9%  Similarity=0.010  Sum_probs=135.7

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccC----CeeeeeeccccCCEEEEEECCCCCEE-EEEeCCCcEEEEcCCC
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSS  138 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~  138 (290)
                      -..+.+++|.+.++.++++-...+.|..+++..    ......+...-.....+++.+.+..| ++-...+.|.++++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            446789999986777887877789999999876    22222232222345788998755544 4445678999999875


Q ss_pred             CceEEEEecCCCCEEEEEEcCCCCEEEEeeC-C-CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCCCeE
Q 022910          139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATL  215 (290)
Q Consensus       139 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i  215 (290)
                      ......+.........++++|.+..|+.+.. . +.|..+++............-.....|+++|++..|+.+ +..+.|
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I  188 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence            5444344434456889999997666555544 2 689988886543322222234567899999877666554 456799


Q ss_pred             EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      ..+|+..... ..+............+++. .+.++++-...+.|..++..+++.+..+..
T Consensus       189 ~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~  247 (316)
T 1ijq_A          189 SSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE  247 (316)
T ss_dssp             EEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             EEEecCCCce-EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence            9999874333 3332211122345677775 456666666778999999878876666653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.20  E-value=4.8e-10  Score=91.50  Aligned_cols=197  Identities=18%  Similarity=0.153  Sum_probs=129.8

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (290)
                      +...+.++...+ ++.++ .++.+  |..++. +++....+...........+.  +..+++++.++.|..++.. ++..
T Consensus        58 ~~~~~~~~~~~~-~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~  129 (330)
T 3hxj_A           58 GEIIECRPSIGK-DGTIY-FGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEK  129 (330)
T ss_dssp             GGEEEECCEETT-TTEEC-CSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEE
T ss_pred             CCCcccceEEec-CCcEE-EecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEE
Confidence            344556777766 55444 45544  888885 555554444332222233333  5567888888999999988 7777


Q ss_pred             EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910          143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (290)
Q Consensus       143 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  222 (290)
                      ..+......+.++...+++. +++++.++.|..||.. ++.+..+......+.++.+.+++.++ +++  +.|..|| .+
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~  203 (330)
T 3hxj_A          130 WRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PD  203 (330)
T ss_dssp             EEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TT
T ss_pred             EEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CC
Confidence            66665555566677776666 5667778999999998 77776666555667777777777644 444  7899999 67


Q ss_pred             CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910          223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  278 (290)
                      ++....+..   ....+.++...++|. |.+++.++.|..++ .+++.+..+....
T Consensus       204 g~~~~~~~~---~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~  254 (330)
T 3hxj_A          204 GTEKWNFYA---GYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGK  254 (330)
T ss_dssp             SCEEEEECC---SSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSS
T ss_pred             CcEEEEEcc---CCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCC
Confidence            776665553   335577788888775 44566778888887 4677766665433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.18  E-value=3.1e-08  Score=76.27  Aligned_cols=185  Identities=16%  Similarity=0.158  Sum_probs=128.7

Q ss_pred             eeeeecccc--CCEEEEEECCCCCEEEEEeCC--CcEEEEcCCCCceEEEEecCCCC-EEEEEEcCCCCEEEEeeCCCeE
Q 022910           99 WASEIQGHK--DSVSSLAFSMDGQLLASGGLD--GLVQIWDPSSGNLKCTLEGPGGG-VEWVSWHPRGHIVLAGSEDSTV  173 (290)
Q Consensus        99 ~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i  173 (290)
                      .+..+. |.  .-...+.|++ +.++.+.+..  ..|+++|+.+++.+..+...... --.+++. .++++...-.++.+
T Consensus        11 v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           11 VVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEE
T ss_pred             EEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEE
Confidence            344453 54  3466899976 5555555554  48999999999999888754432 1234443 23444445568999


Q ss_pred             EEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC--cccCeEEEEEcCCCCEE
Q 022910          174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY--HTEGLTCLTISADSTLA  251 (290)
Q Consensus       174 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l  251 (290)
                      .+||..+.+.+.++...... ..++  +++..|+++..++.|.++|..+.+.+..+.....  .-..++.+.|. +|+++
T Consensus        88 ~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly  163 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL  163 (243)
T ss_dssp             EEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence            99999999999988854433 4454  4677777777789999999999988877764210  11345667765 67666


Q ss_pred             EEEeCCCcEEEEEcCCCcEEEEEccC-------------CCcEEEEEEecCC
Q 022910          252 LSGSKDGSVHMVNITTGKVVSSLVSH-------------TDSIECIGFSRSE  290 (290)
Q Consensus       252 ~~~~~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~i~~s~d~  290 (290)
                      +..-.+..|.+.|..+++.+..+...             ....++|+|+|++
T Consensus       164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~  215 (243)
T 3mbr_X          164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH  215 (243)
T ss_dssp             EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT
T ss_pred             EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCC
Confidence            55556789999999999999988622             1356899999863

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.18  E-value=1.5e-12  Score=108.41  Aligned_cols=148  Identities=17%  Similarity=0.177  Sum_probs=86.2

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCC-CeE-
Q 022910          118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVT-  195 (290)
Q Consensus       118 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~-  195 (290)
                      ++..+++++.+|.|+.||..+++.+..+..  +.+.+..+..++..+++++.+|.|+.||..+++.+..+..+.. .+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577899999999999999999999888876  4455555556777888888999999999988876655543211 010 


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       196 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      +..+. .+..+++++.++.|+.||..+++.+..+...   .    ...++|++..|++++.++.|+.||..+|+.+..+.
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~---~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA---F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC---C----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            00111 3456788888999999999999987776542   1    23456788899999999999999999998765543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.17  E-value=5.6e-08  Score=79.17  Aligned_cols=220  Identities=9%  Similarity=0.011  Sum_probs=139.0

Q ss_pred             eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-------------------cccCCEEEEEECCCCC
Q 022910           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-------------------GHKDSVSSLAFSMDGQ  120 (290)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------------~~~~~i~~~~~~~~~~  120 (290)
                      +.+.-....+++|.+ ++.+++++..++.|..|+..+++......                   .....+..+++.++..
T Consensus        14 ~~g~~~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g   92 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN   92 (322)
T ss_dssp             EECSSSCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred             cCCccCCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence            444334567889998 56766678888999999887654332110                   0123578999997333


Q ss_pred             EEEEEeCCCcEEEEcCCCCceEEEEec----CCCCEEEEEEcC-CCCEEEEeeC-----------------CCeEEEEEC
Q 022910          121 LLASGGLDGLVQIWDPSSGNLKCTLEG----PGGGVEWVSWHP-RGHIVLAGSE-----------------DSTVWMWNA  178 (290)
Q Consensus       121 ~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~i~~~~-~~~~l~~~~~-----------------dg~i~i~d~  178 (290)
                      .|+++...+.|..++..++........    .......+++.+ +|+++++-..                 .+.|..|+.
T Consensus        93 ~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           93 QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            455554455588888776543221111    123478899999 8987666432                 367999998


Q ss_pred             CcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEcCCCCe--eeEEEeCCCCcccCeEEEEEcCCCCEEEEEe
Q 022910          179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADSTLALSGS  255 (290)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (290)
                      .+++....... ......|+++|++++|+++ +..+.|.+|++....  ....+..   ... ...+++.++|+++++..
T Consensus       173 ~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          173 STKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             TTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEec
Confidence            76654332221 2345679999999876655 556899999987421  1122221   122 78899999998777664


Q ss_pred             C----------CCcEEEEEcCCCcEEEEEccCC----CcEEEEEE
Q 022910          256 K----------DGSVHMVNITTGKVVSSLVSHT----DSIECIGF  286 (290)
Q Consensus       256 ~----------dg~i~~wd~~~~~~~~~~~~~~----~~v~~i~~  286 (290)
                      .          .+.|..++. .++.+..+....    ..++++++
T Consensus       248 ~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~  291 (322)
T 2fp8_A          248 EELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE  291 (322)
T ss_dssp             EETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE
T ss_pred             CcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE
Confidence            4          467888886 578777776432    34555555

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.16  E-value=1.5e-08  Score=84.42  Aligned_cols=192  Identities=11%  Similarity=0.080  Sum_probs=124.4

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeeccc---------cCCEE-EEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQGH---------KDSVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (290)
                      ..+++++.++.|..+|..+++.+......         ...+. .+..  .+..+++++.++.|..+|..+++.+..+..
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            35556777899999999999887665532         22232 2222  456788888899999999999998877665


Q ss_pred             CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCe-----EEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910          148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV-----TCGDFTPDGKTICTGSDDATLRVWNPKS  222 (290)
Q Consensus       148 ~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~i~d~~~  222 (290)
                      ..........  .+..+++++.++.|..+|.++++.+..+.......     .....  .+..+++++.++.|..+|..+
T Consensus       132 ~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~t  207 (376)
T 3q7m_A          132 AGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQ  207 (376)
T ss_dssp             SSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTT
T ss_pred             CCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCC
Confidence            4322111222  24578888889999999999998877665432111     11122  245788888899999999999


Q ss_pred             CeeeEEEeCCCCccc----CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          223 GENIHVIRGHPYHTE----GLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       223 ~~~~~~~~~~~~~~~----~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      ++.+...........    .+..+...|  .+..+++++.++.|..+|..+++.+....
T Consensus       208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~  266 (376)
T 3q7m_A          208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE  266 (376)
T ss_dssp             CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc
Confidence            988776653210000    000011111  24566777778888888888888776654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.16  E-value=1.7e-07  Score=75.84  Aligned_cols=216  Identities=13%  Similarity=0.057  Sum_probs=136.9

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC--CcEEEEcCCCCceE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD--GLVQIWDPSSGNLK  142 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~  142 (290)
                      .....++|.+ ++.++++....+.|..|+.... ....+. .......+++.++++++++....  ..|..++..+++..
T Consensus        32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcceEEECC-CCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            5678999999 6677777777899999987653 333332 23468899999999966555432  24777777777754


Q ss_pred             EEEec-CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE-EEee-------e--cCCCCeEEEEEcCCCCEEEEE-e
Q 022910          143 CTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMF-------S--GHGSSVTCGDFTPDGKTICTG-S  210 (290)
Q Consensus       143 ~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~-------~--~~~~~i~~~~~~~~~~~l~~~-~  210 (290)
                      ..... .......++..+.+..+++-...+.|+++|..+++. +...       .  ..-.....|  +|++++|+++ .
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~  186 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT  186 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred             EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence            33332 122345555555555555554688999999875421 1110       0  111234555  7778766554 5


Q ss_pred             CCCeEEEEcCCC-Cee--eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE--EEccCCCcEEEEE
Q 022910          211 DDATLRVWNPKS-GEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS--SLVSHTDSIECIG  285 (290)
Q Consensus       211 ~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~i~  285 (290)
                      ..+.|.+|++.. +..  ...+..    ......++++++|+++++....+.|.+++.. ++...  .+.......++++
T Consensus       187 ~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a  261 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA  261 (306)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred             CCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence            578999999864 321  122221    1235668999999887777778899999975 66533  3444345789999


Q ss_pred             Ee---cCC
Q 022910          286 FS---RSE  290 (290)
Q Consensus       286 ~s---~d~  290 (290)
                      |.   |++
T Consensus       262 ~~g~~~d~  269 (306)
T 2p4o_A          262 FGQTEGDC  269 (306)
T ss_dssp             ECCSTTTT
T ss_pred             EecccCCC
Confidence            98   663

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.15  E-value=1.7e-08  Score=90.50  Aligned_cols=188  Identities=13%  Similarity=0.193  Sum_probs=131.4

Q ss_pred             CCcEEEEEccCCeeeeeecccc-------------------------------CCEEEEEECCCCCEEEEEeCCC-----
Q 022910           86 DDKGFFWRINQGDWASEIQGHK-------------------------------DSVSSLAFSMDGQLLASGGLDG-----  129 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~-------------------------------~~i~~~~~~~~~~~l~~~~~dg-----  129 (290)
                      +|.|+.+|..+++.+..+....                               .....+++.|....++.++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            5899999999999887664210                               0112467888888888887765     


Q ss_pred             --------------cEEEEcCCCCceEEEEecC--C-------CCEEEEEEcCCCC---EEEEeeCCCeEEEEECCcccE
Q 022910          130 --------------LVQIWDPSSGNLKCTLEGP--G-------GGVEWVSWHPRGH---IVLAGSEDSTVWMWNADRAAY  183 (290)
Q Consensus       130 --------------~i~i~d~~~~~~~~~~~~~--~-------~~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~  183 (290)
                                    .|..+|..+++.+-.++..  .       .+.....+..+++   .++.++.+|.++++|..+++.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          4999999999998877642  1       2333333333565   689999999999999999988


Q ss_pred             EEeeecCC------------CCe------------------------EEEEEcCCCCEEEEEe-----------------
Q 022910          184 LNMFSGHG------------SSV------------------------TCGDFTPDGKTICTGS-----------------  210 (290)
Q Consensus       184 ~~~~~~~~------------~~i------------------------~~~~~~~~~~~l~~~~-----------------  210 (290)
                      +.......            .++                        ..++++|+..++++..                 
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            74432111            000                        1257788766665421                 


Q ss_pred             -------------------CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 022910          211 -------------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV  271 (290)
Q Consensus       211 -------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  271 (290)
                                         .+|.|..||+.+++.+..+...    .......+...+.++++++.+|.|++||.++++.+
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence                               2378999999999988777632    22222233446778999999999999999999999


Q ss_pred             EEEccC
Q 022910          272 SSLVSH  277 (290)
Q Consensus       272 ~~~~~~  277 (290)
                      .++...
T Consensus       493 ~~~~~~  498 (668)
T 1kv9_A          493 WQFEAQ  498 (668)
T ss_dssp             EEEECS
T ss_pred             eEecCC
Confidence            988754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.15  E-value=1.6e-09  Score=89.62  Aligned_cols=186  Identities=11%  Similarity=0.003  Sum_probs=126.0

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEec---------CCCcEEEEEccCCeeeeeeccc-------cCCEEEEEECC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGG---------GDDKGFFWRINQGDWASEIQGH-------KDSVSSLAFSM  117 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~-------~~~i~~~~~~~  117 (290)
                      .+.+..+.....+  .++++|+++.++++.+         .++.|.+||+.+++.+.++..+       ......++|+|
T Consensus        56 ~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp  133 (368)
T 1mda_H           56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA  133 (368)
T ss_dssp             TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred             CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC
Confidence            4455556555556  7999995555544431         3688999999999999887633       12346799999


Q ss_pred             CCCEEEEEeC--CCcEEE--EcCCCCceE---------------------------EEEec-------------------
Q 022910          118 DGQLLASGGL--DGLVQI--WDPSSGNLK---------------------------CTLEG-------------------  147 (290)
Q Consensus       118 ~~~~l~~~~~--dg~i~i--~d~~~~~~~---------------------------~~~~~-------------------  147 (290)
                      +|++++++..  ...|.+  +|+.+-+.+                           ..+..                   
T Consensus       134 DGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg  213 (368)
T 1mda_H          134 SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS  213 (368)
T ss_dssp             TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC
T ss_pred             CCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCC
Confidence            9999998864  456888  887430000                           00000                   


Q ss_pred             ---------------------------CC---------------------CCEEEEEEcCCCCEEEEeeC-C--------
Q 022910          148 ---------------------------PG---------------------GGVEWVSWHPRGHIVLAGSE-D--------  170 (290)
Q Consensus       148 ---------------------------~~---------------------~~i~~i~~~~~~~~l~~~~~-d--------  170 (290)
                                                 ..                     .....++++|+++.++++.. .        
T Consensus       214 ~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~  293 (368)
T 1mda_H          214 SQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA  293 (368)
T ss_dssp             SCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred             CCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccC
Confidence                                       00                     00011668888888887643 2        


Q ss_pred             CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC
Q 022910          171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTGS-DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (290)
Q Consensus       171 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (290)
                      +.+.++|+.+.+.+.++.... ....|+|+|+++ .+++.. .++.|.++|+.+++.+..+..    ......+++.+
T Consensus       294 ~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v----g~~P~~i~~~~  366 (368)
T 1mda_H          294 ENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL----DKGPESLSVQN  366 (368)
T ss_dssp             EEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC----CSCCCEEECCC
T ss_pred             CCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC----CCCCCEEEeec
Confidence            356699999999988887443 688999999997 556666 599999999999999888874    33444555543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.12  E-value=4e-08  Score=81.75  Aligned_cols=188  Identities=15%  Similarity=0.072  Sum_probs=123.8

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccccCCE-----EEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCC--
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSV-----SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG--  151 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--  151 (290)
                      .++.++.++.|..+|..+++.+..........     .....  .+..+++++.++.|..+|..+++.+.........  
T Consensus       145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~  222 (376)
T 3q7m_A          145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS  222 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence            44556667777777777777666554321110     11111  2456778888999999999999987766532110  


Q ss_pred             -----EEEEEEcC--CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe
Q 022910          152 -----VEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE  224 (290)
Q Consensus       152 -----i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  224 (290)
                           +..+...|  .+..+++++.++.+..+|.++++.+.....  .....+..  .+..+++++.++.|..+|..+++
T Consensus       223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          223 TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             -------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCC
T ss_pred             cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCc
Confidence                 00011111  256778888899999999999987766542  23444444  36678888899999999999999


Q ss_pred             eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      ........  ....+.....  .+..|++++.+|.|+++|..+++.+..+..
T Consensus       299 ~~w~~~~~--~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          299 TLWTQSDL--LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             EEEEECTT--TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEeeccc--CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            87766522  1112222222  256788899999999999999999888765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.12  E-value=3.3e-07  Score=72.46  Aligned_cols=183  Identities=10%  Similarity=-0.044  Sum_probs=117.3

Q ss_pred             CcEEEEEccCCeee-----eeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCC
Q 022910           87 DKGFFWRINQGDWA-----SEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR  160 (290)
Q Consensus        87 g~i~iw~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~  160 (290)
                      +.|+.+++......     ..+......+..++|++++..|+.+ ...+.|..+++........+.........++++++
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~   89 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence            57888888754321     1122223457899999976655555 45789999999876554444333356889999997


Q ss_pred             CCEEEE-eeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEcCCCCeeeEEEeCCCCcc
Q 022910          161 GHIVLA-GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHPYHT  236 (290)
Q Consensus       161 ~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~  236 (290)
                      +..|+. -...+.|.++++..................++++|++..|+.+..   .+.|..+++... ....+...  ..
T Consensus        90 ~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~--~~  166 (267)
T 1npe_A           90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQD--NL  166 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECT--TC
T ss_pred             CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEEC--CC
Confidence            655554 455688999998754322222222256789999997666655543   468888887543 33333221  23


Q ss_pred             cCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEE
Q 022910          237 EGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVS  272 (290)
Q Consensus       237 ~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~  272 (290)
                      .....++++|++..|+.+ ...+.|.++++.......
T Consensus       167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  203 (267)
T 1npe_A          167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK  203 (267)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE
T ss_pred             CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE
Confidence            467899999976655544 456799999987544333

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.08  E-value=1.3e-08  Score=91.40  Aligned_cols=193  Identities=14%  Similarity=0.132  Sum_probs=134.7

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccccC-----------CEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHKD-----------SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (290)
                      .|++++.++.|..+|..+++.+.++.....           ....+.+  .+..|++++.++.|..+|..+++.+..+..
T Consensus        79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~  156 (677)
T 1kb0_A           79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQNT  156 (677)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeecC
Confidence            455566688999999999998887653321           0112333  466888889999999999999999888775


Q ss_pred             C-C----CCEEE-EEEcCCCCEEEEeeC------CCeEEEEECCcccEEEeeecCCCC----------------------
Q 022910          148 P-G----GGVEW-VSWHPRGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGSS----------------------  193 (290)
Q Consensus       148 ~-~----~~i~~-i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~----------------------  193 (290)
                      . .    ..+.. ...  .+..+++++.      +|.|+.||.++++.+-++......                      
T Consensus       157 ~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~  234 (677)
T 1kb0_A          157 FEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK  234 (677)
T ss_dssp             TTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred             CcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence            4 1    11111 111  2345565553      689999999999988766532211                      


Q ss_pred             ----------eEEEEEcCCCCEEEEEeCCC-------------------eEEEEcCCCCeeeEEEeCCCCc------ccC
Q 022910          194 ----------VTCGDFTPDGKTICTGSDDA-------------------TLRVWNPKSGENIHVIRGHPYH------TEG  238 (290)
Q Consensus       194 ----------i~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~------~~~  238 (290)
                                ...++++|++.++++++.++                   .|..+|..+++.+..++.....      ...
T Consensus       235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~  314 (677)
T 1kb0_A          235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP  314 (677)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence                      13577889888999887664                   5999999999998887753210      122


Q ss_pred             eEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          239 LTCLTISADS---TLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       239 v~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      ...+....+|   ..|++++.+|.|+++|..+|+++..+.
T Consensus       315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence            2233333467   689999999999999999999998775

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.08  E-value=7e-09  Score=93.20  Aligned_cols=195  Identities=16%  Similarity=0.191  Sum_probs=131.0

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccccCC----------E-EEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDS----------V-SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----------i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (290)
                      .+++++.++.|+.+|..+++.+.++......          + ..+..  .+..+++++.++.|+.+|..+|+.+-.+..
T Consensus        72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~  149 (689)
T 1yiq_A           72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVDT  149 (689)
T ss_dssp             EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence            4556667889999999999988877532210          0 11222  356788889999999999999999877764


Q ss_pred             C-C-CCEEEEEEcC--CCCEEEEee------CCCeEEEEECCcccEEEeeecCC--------------------------
Q 022910          148 P-G-GGVEWVSWHP--RGHIVLAGS------EDSTVWMWNADRAAYLNMFSGHG--------------------------  191 (290)
Q Consensus       148 ~-~-~~i~~i~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~--------------------------  191 (290)
                      . . .....+..+|  .+..+++++      .+|.|+.||.++++.+-++....                          
T Consensus       150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~  229 (689)
T 1yiq_A          150 RADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVE  229 (689)
T ss_dssp             CSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHH
T ss_pred             cCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeee
Confidence            2 1 1111111122  133455544      36899999999999876654210                          


Q ss_pred             -----CCeEEEEEcCCCCEEEEEeCCCe-------------------EEEEcCCCCeeeEEEeCCCC------cccCeEE
Q 022910          192 -----SSVTCGDFTPDGKTICTGSDDAT-------------------LRVWNPKSGENIHVIRGHPY------HTEGLTC  241 (290)
Q Consensus       192 -----~~i~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~------~~~~v~~  241 (290)
                           .....++++|...++++++.++.                   |..+|..+++.+..++....      ....+..
T Consensus       230 ~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l  309 (689)
T 1yiq_A          230 QGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMIL  309 (689)
T ss_dssp             HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred             cCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEE
Confidence                 01125788898889999888764                   99999999999888765321      1112222


Q ss_pred             EEEcCCCC---EEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          242 LTISADST---LALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       242 ~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      .....+|+   .|+.++.+|.++++|..+|+++....
T Consensus       310 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~  346 (689)
T 1yiq_A          310 AELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKG  346 (689)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             EeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccc
Confidence            22223564   78899999999999999999986554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.05  E-value=6.5e-08  Score=85.03  Aligned_cols=187  Identities=12%  Similarity=0.104  Sum_probs=127.0

Q ss_pred             CCcEEEEEccCCeeeeeeccccCC-------------------------------------E-EEEEECCCCCEEEEEeC
Q 022910           86 DDKGFFWRINQGDWASEIQGHKDS-------------------------------------V-SSLAFSMDGQLLASGGL  127 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~-------------------------------------i-~~~~~~~~~~~l~~~~~  127 (290)
                      ++.|..+|..+++.+.++......                                     + ..+++.+....++.++.
T Consensus       175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g  254 (571)
T 2ad6_A          175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECC
Confidence            789999999999888765421110                                     0 12456666666766653


Q ss_pred             C----------------CcEEEEcCCCCceEEEEecCC----------CCEEEEEEcCCCC---EEEEeeCCCeEEEEEC
Q 022910          128 D----------------GLVQIWDPSSGNLKCTLEGPG----------GGVEWVSWHPRGH---IVLAGSEDSTVWMWNA  178 (290)
Q Consensus       128 d----------------g~i~i~d~~~~~~~~~~~~~~----------~~i~~i~~~~~~~---~l~~~~~dg~i~i~d~  178 (290)
                      +                +.|..+|..+++.+-.++...          .++. +...++|+   .++.++.+|.++++|.
T Consensus       255 ~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~  333 (571)
T 2ad6_A          255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNR  333 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred             CCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEEC
Confidence            2                359999999999887776321          2221 22234663   6778899999999999


Q ss_pred             CcccEEEeeecCC-------------CCe--------------------------EEEEEcCCCCEEEEEe---------
Q 022910          179 DRAAYLNMFSGHG-------------SSV--------------------------TCGDFTPDGKTICTGS---------  210 (290)
Q Consensus       179 ~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~---------  210 (290)
                      .+++.+..+....             .++                          ..++++|+..+|++.+         
T Consensus       334 ~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~  413 (571)
T 2ad6_A          334 ENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEP  413 (571)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccc
Confidence            9998876654221             111                          2357888777777653         


Q ss_pred             ----------------------------CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910          211 ----------------------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (290)
Q Consensus       211 ----------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  262 (290)
                                                  .+|.|..||+.+++.+..+...    ..+....+...+.++++++.||.|+.
T Consensus       414 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~v~~g~~dg~l~a  489 (571)
T 2ad6_A          414 FMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYATLDGYLKA  489 (571)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             cccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC----CCccceeEEECCCEEEEEcCCCeEEE
Confidence                                        3578999999999988777532    22222222224567788999999999


Q ss_pred             EEcCCCcEEEEEccC
Q 022910          263 VNITTGKVVSSLVSH  277 (290)
Q Consensus       263 wd~~~~~~~~~~~~~  277 (290)
                      ||.++++++.++...
T Consensus       490 ~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          490 LDNKDGKELWNFKMP  504 (571)
T ss_dssp             EETTTCCEEEEEECS
T ss_pred             EECCCCCEEEEEeCC
Confidence            999999999988743

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.05  E-value=6.2e-08  Score=85.29  Aligned_cols=144  Identities=17%  Similarity=0.212  Sum_probs=97.8

Q ss_pred             CcEEEEcCCCCceEEEEec--CC--------CCEEEEEEc-CCCC---EEEEeeCCCeEEEEECCcccEEEeeecCC---
Q 022910          129 GLVQIWDPSSGNLKCTLEG--PG--------GGVEWVSWH-PRGH---IVLAGSEDSTVWMWNADRAAYLNMFSGHG---  191 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~--~~--------~~i~~i~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---  191 (290)
                      +.|..+|..+++.+-.++.  |.        .++. +... .+|+   .++.++.+|.++++|.++++.+..+....   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            5899999999999887753  21        1222 2222 4563   78889999999999999998876554321   


Q ss_pred             ----------CCe--------------------------------EEEEEcCCCCEEEEEe-------------------
Q 022910          192 ----------SSV--------------------------------TCGDFTPDGKTICTGS-------------------  210 (290)
Q Consensus       192 ----------~~i--------------------------------~~~~~~~~~~~l~~~~-------------------  210 (290)
                                .++                                ..++++|...++++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      000                                1345666555555432                   


Q ss_pred             --------------CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          211 --------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       211 --------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                                    .+|.|..||+.+++.+.......    .+..-.+...+.+++.|+.||.|+.||.++|+.+.+++.
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC----CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence                          25789999999999877765321    111111112466788899999999999999999999875


Q ss_pred             C
Q 022910          277 H  277 (290)
Q Consensus       277 ~  277 (290)
                      .
T Consensus       526 ~  526 (582)
T 1flg_A          526 G  526 (582)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.04  E-value=5.3e-07  Score=73.24  Aligned_cols=208  Identities=10%  Similarity=-0.016  Sum_probs=136.2

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee-eeeccccCCEEEEEECCCCCE-EEEEeCCCcEEEEcCCCCceE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-SEIQGHKDSVSSLAFSMDGQL-LASGGLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~  142 (290)
                      ..+.+++|.+.++.++.+-...+.|..+++...... ..+...-.....+++.+.+.. +++-...+.|.++++......
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            356789999867778888778889999998765321 122222234567888875554 444456788999998765444


Q ss_pred             EEEecCCCCEEEEEEcCCCCEEEEeeC--CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEc
Q 022910          143 CTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWN  219 (290)
Q Consensus       143 ~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d  219 (290)
                      ..+.........+++.|.+..|+.+..  .+.|..+++............-.....|+++|++..|+.+ +..+.|..++
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            444344556889999987666666553  5789999887543222222233467899999966666544 5578899999


Q ss_pred             CCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      +........+..   .......+++.. +.++++-...+.|..++..+++.+..+..
T Consensus       195 ~dG~~~~~~~~~---~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          195 LDGTNRQAVVKG---SLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             TTSCSCEEEECS---CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CCCCceEEEecC---CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence            864433223322   234456777753 45556666678999999888876666554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.02  E-value=9.6e-08  Score=84.10  Aligned_cols=188  Identities=12%  Similarity=0.106  Sum_probs=126.1

Q ss_pred             CCCcEEEEEccCCeeeeeeccccCC-------------------------------------E-EEEEECCCCCEEEEEe
Q 022910           85 GDDKGFFWRINQGDWASEIQGHKDS-------------------------------------V-SSLAFSMDGQLLASGG  126 (290)
Q Consensus        85 ~dg~i~iw~~~~~~~~~~~~~~~~~-------------------------------------i-~~~~~~~~~~~l~~~~  126 (290)
                      .+|.|+.+|..+++.+.++......                                     + ..+++.+....++.++
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3789999999999988765422110                                     0 1345566777777776


Q ss_pred             CC----------------CcEEEEcCCCCceEEEEecCCC----------CEEEEEEc-CCC---CEEEEeeCCCeEEEE
Q 022910          127 LD----------------GLVQIWDPSSGNLKCTLEGPGG----------GVEWVSWH-PRG---HIVLAGSEDSTVWMW  176 (290)
Q Consensus       127 ~d----------------g~i~i~d~~~~~~~~~~~~~~~----------~i~~i~~~-~~~---~~l~~~~~dg~i~i~  176 (290)
                      .+                +.|..+|..+++.+-.++....          ++. +... .+|   ..++.++.+|.++++
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l  338 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL  338 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence            54                3799999999999877764321          122 2222 466   567788999999999


Q ss_pred             ECCcccEEEeeecCC-------------CCe--------------------------EEEEEcCCCCEEEEEe-------
Q 022910          177 NADRAAYLNMFSGHG-------------SSV--------------------------TCGDFTPDGKTICTGS-------  210 (290)
Q Consensus       177 d~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~-------  210 (290)
                      |.++++.+.......             .++                          ..++++|+..++++..       
T Consensus       339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~  418 (599)
T 1w6s_A          339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW  418 (599)
T ss_dssp             ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred             ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence            999998876544211             111                          2356777666655431       


Q ss_pred             --------------------------------CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 022910          211 --------------------------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG  258 (290)
Q Consensus       211 --------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  258 (290)
                                                      ..|.|..||+.+++.+......    .+...-.+...+.+++.++.||
T Consensus       419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagg~vf~gt~dg  494 (599)
T 1w6s_A          419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGGTMATAGDLVFYGTLDG  494 (599)
T ss_dssp             EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTS
T ss_pred             ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----CCccCcceEecCCEEEEECCCC
Confidence                                            3478999999999987776521    1111111122466788899999


Q ss_pred             cEEEEEcCCCcEEEEEccC
Q 022910          259 SVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       259 ~i~~wd~~~~~~~~~~~~~  277 (290)
                      .|+.||.++|+.+.+++..
T Consensus       495 ~l~A~D~~tG~~lW~~~l~  513 (599)
T 1w6s_A          495 YLKARDSDTGDLLWKFKIP  513 (599)
T ss_dssp             EEEEEETTTCCEEEEEECS
T ss_pred             eEEEEECCCCCEEEEeeCC
Confidence            9999999999999988743

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.00  E-value=1.9e-06  Score=71.01  Aligned_cols=216  Identities=11%  Similarity=-0.019  Sum_probs=134.4

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEcCCCCceE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~  142 (290)
                      .+..+|.+..+ .+.++++-  ...|+..++........+.. ...+..++|++....|+.+ ...+.|+.+++......
T Consensus        33 ~d~~~C~~~~~-~~~ll~~~--~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~  108 (349)
T 3v64_C           33 PDRRSCKALGP-EPVLLFAN--RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE  108 (349)
T ss_dssp             TTSSCEEESSS-CCEEEEEC--BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCCCccccccc-CceeEeec--ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce
Confidence            34456666666 55555543  35688888876554444443 3457899999866655554 45788999998876655


Q ss_pred             EEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCC-CeEEEEc
Q 022910          143 CTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDD-ATLRVWN  219 (290)
Q Consensus       143 ~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d-g~i~i~d  219 (290)
                      ..+.........+++.+.+. ++++-...+.|.+.++........+...-.....+++.|.+..|+.+ ... +.|..++
T Consensus       109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            44443334467889987554 44555567899999987654333333344567899999966655544 444 7899998


Q ss_pred             CCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEEccCCCcEEEEEE
Q 022910          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLVSHTDSIECIGF  286 (290)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~  286 (290)
                      +..... ..+...  .....+.++++|++..|+.+ ...+.|..+++........+........+|++
T Consensus       189 ~dG~~~-~~~~~~--~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav  253 (349)
T 3v64_C          189 MDGSGR-RIIADT--HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV  253 (349)
T ss_dssp             TTSCSC-EESCCS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred             CCCCCc-EEEEEC--CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence            864332 333211  23457899999866555554 45678999998643332223322334455554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.99  E-value=2.4e-06  Score=77.54  Aligned_cols=212  Identities=8%  Similarity=0.008  Sum_probs=137.7

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----eeeeeeccccCCEEEEEECCCCCEEEE-EeCCCcEEEEcCC
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDGLVQIWDPS  137 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~  137 (290)
                      ....+.+|+|.+..+.++++-...+.|+.+++...    .....+.........|++.+.++.|+. -...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            34567789998866777777777788988888753    222333323345678899877765554 4557899999988


Q ss_pred             CCceEEEEecCCCCEEEEEEcCCCCEEEEeeC--CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCCCe
Q 022910          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDAT  214 (290)
Q Consensus       138 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~  214 (290)
                      .......+.........|++.|...+|+.+..  .+.|.+.++........+...-.....|++.+.+..|+.+ ...+.
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~  581 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  581 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence            65544444445556899999997666666553  3689999987655444444444678999999866666655 45678


Q ss_pred             EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      |..+++........+.... .-.....|++.. +.++++-...+.|...+..+|+.+..+..
T Consensus       582 I~~~d~dG~~~~~v~~~~~-~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~~  641 (791)
T 3m0c_C          582 ISSIDVNGGNRKTILEDEK-RLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAE  641 (791)
T ss_dssp             EEEEETTSCSCEEEEECTT-TTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             EEEEecCCCceEEEecCCC-ccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence            9999986554444443211 123345666643 34555555678899999888876666643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.98  E-value=4.6e-07  Score=73.73  Aligned_cols=198  Identities=13%  Similarity=0.061  Sum_probs=123.3

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee---cc-ccCCEEEEEECC-CCCEEEEEeC------------
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI---QG-HKDSVSSLAFSM-DGQLLASGGL------------  127 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~-~~~~i~~~~~~~-~~~~l~~~~~------------  127 (290)
                      ..+.++++.+.++.++++.. .+.|..++..++......   .+ .......+++.+ +|+.+++-..            
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDC-YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEET-TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCCceEEEcCCCCcEEEEEC-CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence            35788999874455554433 345888887654322111   11 123578899999 8886665432            


Q ss_pred             -----CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe-eCCCeEEEEECCccc--EEEeeecCCCCeEEEEE
Q 022910          128 -----DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDF  199 (290)
Q Consensus       128 -----dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~  199 (290)
                           .+.|..|+..+++....... ......++++|+++.|+++ +..+.|.+|++....  ....+..... ...+++
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~  236 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR  236 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE
T ss_pred             cccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE
Confidence                 36788898877764433222 2235679999999866655 556899999987521  1111211223 788999


Q ss_pred             cCCCCEEEEEeC----------CCeEEEEcCCCCeeeEEEeCCCCc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          200 TPDGKTICTGSD----------DATLRVWNPKSGENIHVIRGHPYH-TEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       200 ~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      .++|+++++...          .+.|..+|.. ++.+..+...... ...++.+++ .+++++++....+.|.++++..
T Consensus       237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             CTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             CCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            999987776544          4678899874 6666666543211 234666666 3566666666678899998753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.94  E-value=9.6e-09  Score=92.34  Aligned_cols=218  Identities=10%  Similarity=0.014  Sum_probs=131.1

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccC----CeeeeeeccccCCEEEEEECCCCCE-EEEEeCCCcEEEEcCCCCc
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMDGQL-LASGGLDGLVQIWDPSSGN  140 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~  140 (290)
                      .+.+|+|.+..+.++++-...+.|+.+++..    ......+.........|++.+.+.. +++-...+.|.++++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            4567889885666666666678899998875    2222222212223456788755544 4444557889999987655


Q ss_pred             eEEEEecCCCCEEEEEEcCCCCEEEEeeC--CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEE-EEEeCCCeEEE
Q 022910          141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDDATLRV  217 (290)
Q Consensus       141 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i  217 (290)
                      ....+.........|+++|.+.+|+.+..  .+.|.++++........+...-.....|+|+|++..| ++-+..+.|.+
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~  566 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  566 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence            44444333345678899997665555543  2678888876433222222223456789999865544 55556788999


Q ss_pred             EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910          218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG  285 (290)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~  285 (290)
                      +++..... ..+............|++..+ .++++....+.|..++..+++.+..+.......++|+
T Consensus       567 ~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~  632 (699)
T 1n7d_A          567 IDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  632 (699)
T ss_dssp             ECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred             EccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence            99865433 333321111223345555543 4555556678999999888988887764333344443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.93  E-value=4.7e-06  Score=76.28  Aligned_cols=216  Identities=11%  Similarity=0.064  Sum_probs=141.8

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc--------ccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--------HKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      ...|.++...+ ++.+. .|+.++-|..|+..+++.......        ....|.++...++++.|.+|+.++-|.+|+
T Consensus       356 ~~~V~~i~~d~-~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          356 DNVVSCIVEDK-DKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             CSSEEEEEECT-TSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CCeeEEEEECC-CCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence            45689999887 55444 566677799999877654432211        235789999988888566777767799999


Q ss_pred             CCCCceEEEEe----cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee------cCCCCeEEEEEcCCCCE
Q 022910          136 PSSGNLKCTLE----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS------GHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       136 ~~~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~  205 (290)
                      ..+++......    .....|.++...+++++.+.. . +-|.+|+..+++......      .....|.++...+++++
T Consensus       434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l  511 (795)
T 4a2l_A          434 RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL  511 (795)
T ss_dssp             TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred             CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence            88876543221    134569999998888755544 4 458889988765433221      12357899999988876


Q ss_pred             EEEEeCCCeEEEEcCCCCeeeEEEeC----CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc----C
Q 022910          206 ICTGSDDATLRVWNPKSGENIHVIRG----HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS----H  277 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----~  277 (290)
                      .+.. . +-|..|+..+++.  .+..    .......|.++...++|.+.++.. . -|..|+..+++.. .+..    .
T Consensus       512 Wigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~-~~~~~~gl~  584 (795)
T 4a2l_A          512 WIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK-RYNTTNGLP  584 (795)
T ss_dssp             EEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE-EECGGGTCS
T ss_pred             EEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE-EeCCCCCCc
Confidence            5554 4 4588899877654  3321    112345789999999888666543 3 5888998766543 3321    1


Q ss_pred             CCcEEEEEEecCC
Q 022910          278 TDSIECIGFSRSE  290 (290)
Q Consensus       278 ~~~v~~i~~s~d~  290 (290)
                      ...|.++...++|
T Consensus       585 ~~~i~~i~~d~~g  597 (795)
T 4a2l_A          585 NNVVYGILEDSFG  597 (795)
T ss_dssp             CSCEEEEEECTTS
T ss_pred             hhheEEEEECCCC
Confidence            3467777766554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.92  E-value=4.9e-06  Score=76.22  Aligned_cols=217  Identities=13%  Similarity=0.095  Sum_probs=142.9

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec------cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ------GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (290)
                      ...|.++...+ .+.+. .|+.++-|..|+..+........      .....|.++...+++. |..|+.++-|..|+..
T Consensus       309 ~~~i~~i~~D~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~  385 (795)
T 4a2l_A          309 QRSVRSIFMDS-QGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPI  385 (795)
T ss_dssp             SSCEEEEEECT-TSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTT
T ss_pred             CCcEEEEEEeC-CcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCC
Confidence            35789998887 44444 56666778888876554322111      1245699999988876 4456667679999988


Q ss_pred             CCceEEEEec--------CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee----cCCCCeEEEEEcCCCCE
Q 022910          138 SGNLKCTLEG--------PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS----GHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       138 ~~~~~~~~~~--------~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~  205 (290)
                      +++.......        ....|.++...++++.|.+|+.++-|.+|+..+++......    .....|.++...+++++
T Consensus       386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l  465 (795)
T 4a2l_A          386 TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL  465 (795)
T ss_dssp             TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE
T ss_pred             CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE
Confidence            7765432211        23568999998888857777777789999998776433221    13457899999888875


Q ss_pred             EEEEeCCCeEEEEcCCCCeeeEEEeCC----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc------
Q 022910          206 ICTGSDDATLRVWNPKSGENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV------  275 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------  275 (290)
                      .+.. .. .|.+|+..+++.. .+...    ......|.++...++|.+.+...  +-|..|+..+++.  .+.      
T Consensus       466 wigt-~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~  538 (795)
T 4a2l_A          466 WLGT-LS-ALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVS  538 (795)
T ss_dssp             EEEE-SS-CEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSC
T ss_pred             EEEe-cC-ceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCC
Confidence            5544 44 5889998876543 22211    11335789999999888766554  5688899877665  332      


Q ss_pred             -cCCCcEEEEEEecCC
Q 022910          276 -SHTDSIECIGFSRSE  290 (290)
Q Consensus       276 -~~~~~v~~i~~s~d~  290 (290)
                       .+...|.+|...++|
T Consensus       539 ~l~~~~i~~i~~d~~g  554 (795)
T 4a2l_A          539 NVTKLFTNCIYEASNG  554 (795)
T ss_dssp             GGGGSCEEEEEECTTS
T ss_pred             CCCCCeeEEEEECCCC
Confidence             123467888776654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.91  E-value=3.3e-06  Score=70.53  Aligned_cols=213  Identities=10%  Similarity=-0.037  Sum_probs=132.0

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEcCCCCceEEEE
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~  145 (290)
                      -.|.+..+ .+.++++.  ...|+.+++........+. ....+..++|.+.+..|+.+ ...+.|+.+++........+
T Consensus        79 ~~C~~~~~-~~~l~~~~--~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           79 RSCKALGP-EPVLLFAN--RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             SCEEECSS-CCEEEEEC--BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred             CeECCccc-cceeEeec--CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence            34555555 45555443  3678888887765544444 33457899999766655544 45788999998876654444


Q ss_pred             ecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe-CC-CeEEEEcCCC
Q 022910          146 EGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DD-ATLRVWNPKS  222 (290)
Q Consensus       146 ~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~  222 (290)
                      .........+++.+.+. ++++-...+.|.+.++........+.........|++.|.+..|+.+. .. +.|..+++..
T Consensus       155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            43333456788887554 445555577899998876543333443445679999999766665544 34 7899998865


Q ss_pred             CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEEccCCCcEEEEEE
Q 022910          223 GENIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLVSHTDSIECIGF  286 (290)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~  286 (290)
                      ......+..   .....+.|+|+|++..|+.+ +..+.|..+++........+........+|++
T Consensus       235 ~~~~~~~~~---~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav  296 (386)
T 3v65_B          235 SGRRIIADT---HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV  296 (386)
T ss_dssp             CSCEEEECS---SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE
T ss_pred             CCcEEEEEC---CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE
Confidence            443333322   23457899999865555544 55678999998644333233322334455554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.90  E-value=1.6e-06  Score=67.60  Aligned_cols=187  Identities=14%  Similarity=0.242  Sum_probs=125.0

Q ss_pred             eeccccCCEEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceEEEEecC-CCCEEEEEEcCCCCEEEEeeCCCeEEEEECC
Q 022910          102 EIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD  179 (290)
Q Consensus       102 ~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  179 (290)
                      .+.+-...+..++|+|+++.| ++...++.|...|.. ++.+..+... ....-.|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            344555679999999987654 456778899999988 8887777532 2468889999888776766667889999876


Q ss_pred             cccE---EEeee------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC---CCeeeEEEeC----CCCcccCeEEEE
Q 022910          180 RAAY---LNMFS------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK---SGENIHVIRG----HPYHTEGLTCLT  243 (290)
Q Consensus       180 ~~~~---~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~----~~~~~~~v~~~~  243 (290)
                      ....   +....      ..+.....|+|+|.++.|+++.......+|.+.   ....+..+..    .......+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5432   22221      234456899999998878777765554555443   1112222211    011234578999


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC---------CcEEEEEEecCC
Q 022910          244 ISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHT---------DSIECIGFSRSE  290 (290)
Q Consensus       244 ~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~i~~s~d~  290 (290)
                      ++| .+++++.......|..+|.. ++++..+.-..         ..--+|+|.|+|
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G  235 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG  235 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence            999 55677777777889999965 66776665332         256789998876

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.89  E-value=1.4e-07  Score=84.62  Aligned_cols=194  Identities=16%  Similarity=0.184  Sum_probs=130.3

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeeeccccCC----------E-EEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDS----------V-SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----------i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (290)
                      .+++++.++.|..+|..+++.+.++......          + ..+.+  .+..+++++.++.|..+|..+++.+-.+..
T Consensus        68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~  145 (668)
T 1kv9_A           68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (668)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence            4455666889999999999988776532110          0 11222  356788888999999999999999877764


Q ss_pred             CCC-CEEEEEEcC--CCCEEEEeeC------CCeEEEEECCcccEEEeeecCC---------------------------
Q 022910          148 PGG-GVEWVSWHP--RGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHG---------------------------  191 (290)
Q Consensus       148 ~~~-~i~~i~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~---------------------------  191 (290)
                      ... ....+..+|  .+..++++..      +|.|+.+|.++++.+-++....                           
T Consensus       146 ~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~  225 (668)
T 1kv9_A          146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKL  225 (668)
T ss_dssp             SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH
T ss_pred             CCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeee
Confidence            211 000011111  1345555543      5899999999999887664211                           


Q ss_pred             ----CCeEEEEEcCCCCEEEEEeCCCe-------------------EEEEcCCCCeeeEEEeCCCCcc-------cCeEE
Q 022910          192 ----SSVTCGDFTPDGKTICTGSDDAT-------------------LRVWNPKSGENIHVIRGHPYHT-------EGLTC  241 (290)
Q Consensus       192 ----~~i~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~~-------~~v~~  241 (290)
                          .....+++.|...++++++.++.                   |..+|..+++.+..++... |.       .+...
T Consensus       226 ~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~-~~~wd~~~~~~~~~  304 (668)
T 1kv9_A          226 GGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP-GDSWDFTATQQITL  304 (668)
T ss_dssp             CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST-TCCSCCCCCSCEEE
T ss_pred             CCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC-CccccccCCCCcEE
Confidence                01124678888888988887763                   9999999999988877532 11       22222


Q ss_pred             EEEcCCCC---EEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          242 LTISADST---LALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       242 ~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      ..+..+|+   .|+.++.+|.++++|..+|+++..+.
T Consensus       305 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          305 AELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK  341 (668)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             EEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence            23333565   78899999999999999999986554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.89  E-value=2.6e-07  Score=83.99  Aligned_cols=194  Identities=12%  Similarity=0.073  Sum_probs=115.1

Q ss_pred             CEEEEEEC-CCCCcEEE-EecCCC----cEEEEEccCC-eeeee-eccccCCEEEEEECCCCCEEEEEeCC-----CcEE
Q 022910           66 EVYSVACS-PTDATLVA-TGGGDD----KGFFWRINQG-DWASE-IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQ  132 (290)
Q Consensus        66 ~v~~~~~~-~~~~~~l~-~~~~dg----~i~iw~~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~  132 (290)
                      .+...+|+ | ++++|| +...+|    +|+++++.++ +.+.. +.   .....+.|+|+++.|+....+     ..|+
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            67889999 9 555444 444333    4999999988 63221 21   113468899999988877664     3688


Q ss_pred             EEcCCCCce--EEEEec-CCCCEEEEEEcCCCCEEEEeeC---CCeEEEEECCcc--cE--EEeeecCCCCeEEEEEcCC
Q 022910          133 IWDPSSGNL--KCTLEG-PGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRA--AY--LNMFSGHGSSVTCGDFTPD  202 (290)
Q Consensus       133 i~d~~~~~~--~~~~~~-~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~--~~--~~~~~~~~~~i~~~~~~~~  202 (290)
                      ++++.++..  ...+.. .......+.|+|++++|+..+.   ...|+++|+.++  ..  .............+.|+..
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g  330 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT  330 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence            888887642  233332 2234677899999998887653   346899999875  22  2222333455566665544


Q ss_pred             CCEEEEEeCC----CeEEEEcCCCCeeeEE-EeCCCCcccCeEEEEEcCCCCEEEEEeCCCc--EEEEEc
Q 022910          203 GKTICTGSDD----ATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADSTLALSGSKDGS--VHMVNI  265 (290)
Q Consensus       203 ~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~~wd~  265 (290)
                      +.+++.+..+    ..|..+++.++..... +..+. ....+..+.+. .+.++++...+|.  |+++++
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            4444444433    3677788765322122 22211 12245556665 3455666666774  556665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.88  E-value=3.7e-06  Score=68.16  Aligned_cols=193  Identities=13%  Similarity=0.190  Sum_probs=129.2

Q ss_pred             CcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC----CC---EEEEEeC---CCcEEEEcC--CCCceEEE
Q 022910           77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD----GQ---LLASGGL---DGLVQIWDP--SSGNLKCT  144 (290)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~l~~~~~---dg~i~i~d~--~~~~~~~~  144 (290)
                      ..+++.....+-+.+||+ +++.+..+..  +.++.+..-|.    ++   ++++...   +++|.+|++  .++. +..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            345666667788999999 7888887763  55666666552    22   2233333   578999966  3443 444


Q ss_pred             Eec-------CCCCEEEEEE--cCC-CC-EEEEeeCCCeEEEEECC-------cccEEEeeecCCCCeEEEEEcCCCCEE
Q 022910          145 LEG-------PGGGVEWVSW--HPR-GH-IVLAGSEDSTVWMWNAD-------RAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (290)
Q Consensus       145 ~~~-------~~~~i~~i~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l  206 (290)
                      +..       ....+..+++  +|. +. ++++...+|.+..|.+.       +.+.++++.. .+.+..+...+....|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence            421       1134556777  664 43 68888889999999983       3456777764 5678899999988999


Q ss_pred             EEEeCCCeEEEEcCC-----CCeeeEEEeCCCCcccCeEEEEEc--CCCC-EEEEEe-CCCcEEEEEcC-CCcEEEEEc
Q 022910          207 CTGSDDATLRVWNPK-----SGENIHVIRGHPYHTEGLTCLTIS--ADST-LALSGS-KDGSVHMVNIT-TGKVVSSLV  275 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~l~~~~-~dg~i~~wd~~-~~~~~~~~~  275 (290)
                      +++-.+.-|..|+..     +++.+..+.. ......+..|++-  ++++ +|++++ .++++.+||.. +.+.+..|.
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            999999888888855     2344444332 1133468888884  4555 666665 57799999996 778888875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.88  E-value=2.5e-06  Score=72.26  Aligned_cols=218  Identities=10%  Similarity=0.125  Sum_probs=131.1

Q ss_pred             CEEEEEECC-CCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC-C----cEEEEcCCCC
Q 022910           66 EVYSVACSP-TDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-G----LVQIWDPSSG  139 (290)
Q Consensus        66 ~v~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g----~i~i~d~~~~  139 (290)
                      ....|+++| .++.++++-.. +.|+.+++..+....... .......++|++++++|+++... +    .+.+++. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            457889998 35665555444 889999988766544433 44567899999999966666542 2    2333432 23


Q ss_pred             ceE--EEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEeeec-CCCCeEEEEEcCCCCEEE-EEeCCCe
Q 022910          140 NLK--CTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTPDGKTIC-TGSDDAT  214 (290)
Q Consensus       140 ~~~--~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~-~~~~dg~  214 (290)
                      ...  ..+.. ......++++| ++.++++-...+.|+.++...+........ .......|+|+|++++|+ +-...+.
T Consensus       215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence            221  22322 23356788999 677676666788999999987654222221 224578899999999555 4556788


Q ss_pred             EEEEcCCC--Cee--eEEEeCCC---C---------cccCeE-EEEEc--------CCCCEEEEEeCCCcEEEEEcCCCc
Q 022910          215 LRVWNPKS--GEN--IHVIRGHP---Y---------HTEGLT-CLTIS--------ADSTLALSGSKDGSVHMVNITTGK  269 (290)
Q Consensus       215 i~i~d~~~--~~~--~~~~~~~~---~---------~~~~v~-~~~~~--------~~~~~l~~~~~dg~i~~wd~~~~~  269 (290)
                      |+.++...  +..  +..+.+..   .         .-.... .++..        +++.++++-...+.|+.++ ..++
T Consensus       294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~  372 (430)
T 3tc9_A          294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGR  372 (430)
T ss_dssp             EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSE
T ss_pred             EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCc
Confidence            99987653  221  22222210   0         011223 45553        4466666666678899988 4564


Q ss_pred             EEEEEccC---------C---------CcEEEEEEecC
Q 022910          270 VVSSLVSH---------T---------DSIECIGFSRS  289 (290)
Q Consensus       270 ~~~~~~~~---------~---------~~v~~i~~s~d  289 (290)
                      .. ++.+.         .         ...+.|++.|+
T Consensus       373 v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~  409 (430)
T 3tc9_A          373 VT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEE  409 (430)
T ss_dssp             EE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETT
T ss_pred             EE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECC
Confidence            43 33221         1         14788888873

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.85  E-value=2.1e-05  Score=63.79  Aligned_cols=177  Identities=11%  Similarity=-0.012  Sum_probs=114.8

Q ss_pred             CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEcCCC----CceEEEEecCCCCEEEEEEcCCC
Q 022910           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSS----GNLKCTLEGPGGGVEWVSWHPRG  161 (290)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~i~~~~~~  161 (290)
                      ..|+..++........+. ....+..++|++.+..|+.+ ...+.|..+++..    ......+.........+++.+.+
T Consensus        10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            578999998876555444 34567899999876655554 4568999999876    22222333232346788998755


Q ss_pred             C-EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEcCCCCeeeEEEeCCCCcccC
Q 022910          162 H-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-D-ATLRVWNPKSGENIHVIRGHPYHTEG  238 (290)
Q Consensus       162 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~  238 (290)
                      . ++++-...+.|.++++........+.........+++.|.+..|+.+.. . +.|..+++.. .....+...  .-..
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~--~~~~  165 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTE--NIQW  165 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECS--SCSC
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEEC--CCCC
Confidence            4 4455566789999998765444334434456789999996666655544 3 7898888854 333333221  2356


Q ss_pred             eEEEEEcCCCCEEEEE-eCCCcEEEEEcCC
Q 022910          239 LTCLTISADSTLALSG-SKDGSVHMVNITT  267 (290)
Q Consensus       239 v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~  267 (290)
                      .+.++++|++..|+.+ +..+.|..+++..
T Consensus       166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          166 PNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            7899999876655555 4567899999864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.80  E-value=1.4e-05  Score=67.71  Aligned_cols=200  Identities=12%  Similarity=0.133  Sum_probs=122.9

Q ss_pred             CEEEEEECCC--CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC-----cEEEEcCCC
Q 022910           66 EVYSVACSPT--DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSS  138 (290)
Q Consensus        66 ~v~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~  138 (290)
                      ....|+|.|+  ++.++++-.. +.|+.++..++....... .......++|+++++ |+.+...+     .+..++...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            4568999983  4666655444 899999998776655443 445689999999999 44444321     133333222


Q ss_pred             Cce-EEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEee-ec-CCCCeEEEEEcCCCCEEEE-EeCCC
Q 022910          139 GNL-KCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMF-SG-HGSSVTCGDFTPDGKTICT-GSDDA  213 (290)
Q Consensus       139 ~~~-~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~-~~~dg  213 (290)
                      +.. ...+. .......++++| ++.++++-..++.|+.++..++.....+ .. .......|+|+|++++|++ -...+
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            211 11222 223456688999 6766666667789999999877652222 21 1223357999999995554 45578


Q ss_pred             eEEEEcCC--CCee--eEEEeCC---C---------CcccCeEEEEE---------cCCCCEEEEEeCCCcEEEEEcCCC
Q 022910          214 TLRVWNPK--SGEN--IHVIRGH---P---------YHTEGLTCLTI---------SADSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       214 ~i~i~d~~--~~~~--~~~~~~~---~---------~~~~~v~~~~~---------~~~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                      .|+.+++.  ++..  ...+.+.   .         ..-.....+++         .+++.++++-...+.|+.++. +|
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            89997754  3321  1222221   0         01124677899         777877777777889999984 56


Q ss_pred             cE
Q 022910          269 KV  270 (290)
Q Consensus       269 ~~  270 (290)
                      ..
T Consensus       375 ~v  376 (433)
T 4hw6_A          375 RV  376 (433)
T ss_dssp             EE
T ss_pred             CE
Confidence            43

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.79  E-value=2.3e-05  Score=65.70  Aligned_cols=187  Identities=12%  Similarity=0.005  Sum_probs=123.0

Q ss_pred             CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEcCCCC----ceEEEEecCCC
Q 022910           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSG----NLKCTLEGPGG  150 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~----~~~~~~~~~~~  150 (290)
                      ...++++.  ...|+..++........+. ....+..++|++....|+.+ ...+.|+.+++...    .....+.....
T Consensus        83 ~~~ll~~~--~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~  159 (400)
T 3p5b_L           83 IAYLFFTN--RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ  159 (400)
T ss_dssp             SCEEEEEE--TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred             cceeEEec--cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence            33444443  3788888888765544444 44568899999876666555 45678988988752    23334443445


Q ss_pred             CEEEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEcCCCCeeeE
Q 022910          151 GVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIH  227 (290)
Q Consensus       151 ~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~  227 (290)
                      ....+++.+. ++++++-...+.|.+.++........+.........|++.|.+.+|+....  .+.|...++.......
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~  239 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  239 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence            6788999874 445555556789999999876655555444556899999997666665542  3789999986544333


Q ss_pred             EEeCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCC
Q 022910          228 VIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTG  268 (290)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~  268 (290)
                      .+..   .-...+.|++++++..|+.+ ...+.|..+++...
T Consensus       240 ~~~~---~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          240 LVTE---NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             EECS---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEC---CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            3332   23567899999876666655 44678999998643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.77  E-value=2.4e-06  Score=75.21  Aligned_cols=193  Identities=16%  Similarity=0.154  Sum_probs=128.9

Q ss_pred             EEEEecC-CCcEEEEEc-cCCeeeeeeccccC-----------CEEEEEECCCCCE----EEEEeCCCcEEEEcCCCCce
Q 022910           79 LVATGGG-DDKGFFWRI-NQGDWASEIQGHKD-----------SVSSLAFSMDGQL----LASGGLDGLVQIWDPSSGNL  141 (290)
Q Consensus        79 ~l~~~~~-dg~i~iw~~-~~~~~~~~~~~~~~-----------~i~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~~~  141 (290)
                      .+++++. ++.|.-+|. .+++.+.++.....           ....+++.|.+..    |++++.++.|..+|..+++.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~  143 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence            4445555 789999999 89988877653211           0123455444444    88888899999999999998


Q ss_pred             EEEEecCCC----CEEE-EEEcCCCCEEEEee------CCCeEEEEECCcccEEEeeecCCCC-----------------
Q 022910          142 KCTLEGPGG----GVEW-VSWHPRGHIVLAGS------EDSTVWMWNADRAAYLNMFSGHGSS-----------------  193 (290)
Q Consensus       142 ~~~~~~~~~----~i~~-i~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~-----------------  193 (290)
                      +-.......    .+.+ ..+. ++ .+++++      .+|.|+.+|.++++.+-++......                 
T Consensus       144 ~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g  221 (599)
T 1w6s_A          144 VWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (599)
T ss_dssp             EEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence            876653220    1111 1111 34 555555      3799999999999987665532111                 


Q ss_pred             --------------------e-EEEEEcCCCCEEEEEeCC----------------CeEEEEcCCCCeeeEEEeCCCCcc
Q 022910          194 --------------------V-TCGDFTPDGKTICTGSDD----------------ATLRVWNPKSGENIHVIRGHPYHT  236 (290)
Q Consensus       194 --------------------i-~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~~~  236 (290)
                                          + ..+++.+...+++.++.+                +.|..+|..+++.+..++... |.
T Consensus       222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~-~d  300 (599)
T 1w6s_A          222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP-HD  300 (599)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST-TC
T ss_pred             ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC-Cc
Confidence                                0 134566777788887765                389999999999988877542 21


Q ss_pred             --------cCeEEEEEc-CCC---CEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          237 --------EGLTCLTIS-ADS---TLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       237 --------~~v~~~~~~-~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                              .++ -+... .+|   ..++.++.+|.++++|..+|+++....
T Consensus       301 ~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          301 EWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             SSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence                    112 12222 467   578889999999999999999988765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.76  E-value=9.2e-06  Score=74.25  Aligned_cols=217  Identities=12%  Similarity=0.080  Sum_probs=134.8

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee---ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (290)
                      ...|.++...+ ++.+. .|+.++-|.+|+..++......   ......|.++...+++.+. +|+..+-|..++..+++
T Consensus       362 ~~~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~  438 (781)
T 3v9f_A          362 NKVVSSVCDDG-QGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKK  438 (781)
T ss_dssp             SSCEEEEEECT-TSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCE
T ss_pred             CcceEEEEEcC-CCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCc
Confidence            35688998887 44444 4555566888887654432211   1234678999988777644 46666668999987765


Q ss_pred             eEEEEe--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC-----CCCeEEEEEcCCCCEEEEEeCCC
Q 022910          141 LKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-----GSSVTCGDFTPDGKTICTGSDDA  213 (290)
Q Consensus       141 ~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg  213 (290)
                      ......  .....|.++...+++.+.+ |+. +-|..|+..+++........     ...|.++...++|++.+ |+..+
T Consensus       439 ~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~  515 (781)
T 3v9f_A          439 FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGG  515 (781)
T ss_dssp             EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSS
T ss_pred             EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCC
Confidence            433221  1345799999888776444 455 56899998876543322211     46789999998887555 44434


Q ss_pred             eEEEEcCCCCeeeEEEeC-CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc----CCCcEEEEEEec
Q 022910          214 TLRVWNPKSGENIHVIRG-HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS----HTDSIECIGFSR  288 (290)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----~~~~v~~i~~s~  288 (290)
                      -|..||..+++. ..+.. .......|.++...++|.+.++. ..|.|..||..+++. ..+..    ....|.++...+
T Consensus       516 Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~  592 (781)
T 3v9f_A          516 GVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDK  592 (781)
T ss_dssp             CEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECS
T ss_pred             CEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcE-EEccccCCCCCceEEEEEECC
Confidence            478899876653 33332 11234568999998888866654 466658888876653 22321    123466665554


Q ss_pred             C
Q 022910          289 S  289 (290)
Q Consensus       289 d  289 (290)
                      +
T Consensus       593 ~  593 (781)
T 3v9f_A          593 N  593 (781)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.74  E-value=1.7e-05  Score=64.35  Aligned_cols=204  Identities=8%  Similarity=-0.007  Sum_probs=123.3

Q ss_pred             CcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEcCCCCce-EEEEecCCCCE
Q 022910           77 ATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNL-KCTLEGPGGGV  152 (290)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~-~~~~~~~~~~i  152 (290)
                      +.+|++.  ...|+..++....  ....+. .......+.|.+....|+.+ ...+.|..+++..... ...+.......
T Consensus         5 p~ll~~~--~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p   81 (318)
T 3sov_A            5 PLLLYAN--RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP   81 (318)
T ss_dssp             CEEEEEC--EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred             cEEEEEc--cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence            3445443  4678999987753  222222 22356789999865555444 5578899999876642 22233333346


Q ss_pred             EEEEEcCCC-CEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEcCCCCeeeEEE
Q 022910          153 EWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS--DDATLRVWNPKSGENIHVI  229 (290)
Q Consensus       153 ~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~  229 (290)
                      ..+++.+.+ +++++-...+.|.++++........+.........+++.|.+..|+.+.  ..+.|..+++..... ..+
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~  160 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FII  160 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEE
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEE
Confidence            678888744 4555555678999999876543333334455678999999766666555  257899998864333 333


Q ss_pred             eCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEEccCCCcEEEEEE
Q 022910          230 RGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLVSHTDSIECIGF  286 (290)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~  286 (290)
                      ...  .-...+.++++|++..|+.+ +..+.|..+++........+........++++
T Consensus       161 ~~~--~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav  216 (318)
T 3sov_A          161 INS--EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL  216 (318)
T ss_dssp             ECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEE
T ss_pred             EEC--CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEE
Confidence            211  23457899999966555554 45678999998643322222222334455554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.73  E-value=8.9e-06  Score=72.09  Aligned_cols=209  Identities=11%  Similarity=-0.012  Sum_probs=131.5

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee-eeeeccccCCEEEEEECCCCCEEEE-EeCCCcEEEEcCCCCce
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQGHKDSVSSLAFSMDGQLLAS-GGLDGLVQIWDPSSGNL  141 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~  141 (290)
                      -+.+.+++|++.++.++++-...+.|..+++..... ...+...-.....+++.+.+..|+. -...+.|.+.++.....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            345789999987777777777778899888876532 2233323356789999986665544 45678999999876554


Q ss_pred             EEEEecCCCCEEEEEEcCCCCEEEEeeC--CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEE
Q 022910          142 KCTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVW  218 (290)
Q Consensus       142 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~  218 (290)
                      ...+.........|++.|.+.+|+.+..  .+.|...++............-.....|++++.+..|+.+ ...+.|..+
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~  198 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  198 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence            4344344455778999997666665553  4678878876544333333344567899999976666544 456789999


Q ss_pred             cCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      ++............   ......+++..+ .++++-...+.|...|..+++.+..+..
T Consensus       199 ~~dG~~~~~~~~~~---~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~  252 (619)
T 3s94_A          199 NLDGTNRQAVVKGS---LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHS  252 (619)
T ss_dssp             SSSCCEEC------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCS
T ss_pred             cCCCCccEEEEeCC---CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEec
Confidence            99765443333211   122345677655 4444555678899999988876665544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.72  E-value=3.6e-05  Score=61.87  Aligned_cols=207  Identities=10%  Similarity=0.031  Sum_probs=131.0

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee-ecc----c--cCCEEEEEE---CCCCCEEEEEe----
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQG----H--KDSVSSLAF---SMDGQLLASGG----  126 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~----~--~~~i~~~~~---~~~~~~l~~~~----  126 (290)
                      ....----+++|.+..+.++++.-..++|..|+...+..... +..    .  ...+..|.|   .|+++++++..    
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence            333334457899886666776666899999999875543332 221    1  114689999   58877776543    


Q ss_pred             ---------CCCcEEEEcCC---CCceEEEEec-------------CCCCEEEEEEcCCCCEEEEeeCC-CeEEEEECCc
Q 022910          127 ---------LDGLVQIWDPS---SGNLKCTLEG-------------PGGGVEWVSWHPRGHIVLAGSED-STVWMWNADR  180 (290)
Q Consensus       127 ---------~dg~i~i~d~~---~~~~~~~~~~-------------~~~~i~~i~~~~~~~~l~~~~~d-g~i~i~d~~~  180 (290)
                               .+..|..||+.   +++.+.....             .......++..++|+..++++.. +.|..++...
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence                     25779999999   7877655431             11247899999999999999888 8888888764


Q ss_pred             ccEEEeee-----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeee-EEEe--CCCCcccCeEEE-EEcCCCCE-
Q 022910          181 AAYLNMFS-----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI-HVIR--GHPYHTEGLTCL-TISADSTL-  250 (290)
Q Consensus       181 ~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~--~~~~~~~~v~~~-~~~~~~~~-  250 (290)
                      .....-+.     ......+.|+++|+++.|++....|.|..+|+.+.... ..+.  +....-.....| ..-.+|+. 
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl  248 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV  248 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence            43221111     11223679999999999988877999999999853320 1111  211111233443 22236777 


Q ss_pred             EEEEeCCCcEEEEEcCC
Q 022910          251 ALSGSKDGSVHMVNITT  267 (290)
Q Consensus       251 l~~~~~dg~i~~wd~~~  267 (290)
                      |++....+.+.+.+...
T Consensus       249 lV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          249 LVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEETTEEEEEECSST
T ss_pred             EEEcCCCCEEEEECCCC
Confidence            45555566666665443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.69  E-value=5.2e-05  Score=67.32  Aligned_cols=206  Identities=10%  Similarity=-0.050  Sum_probs=138.0

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEE-EeCCCcEEEEcCCCCceEE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~  143 (290)
                      ..+.+|+|.+.++.++++-..++.|+.+++........+.........+++.+.+..|+. -...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            467899999977788888888899999998765443333322245678888876655544 4556889999987654433


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEeeC--CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEcC
Q 022910          144 TLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNP  220 (290)
Q Consensus       144 ~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~  220 (290)
                      .+.........|++.|....|+.+..  .+.|...++.......... .-.....|++++.+..|+.+ ...+.|..+++
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            33344456899999996666665553  5688888887554333333 44567899999976666554 55678999998


Q ss_pred             CCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      ..... ..+..   .......+++.. +.++++-...+.|...|..+++....+..
T Consensus       196 dG~~~-~v~~~---~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~  246 (628)
T 4a0p_A          196 LGLNR-EVIAD---DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQG  246 (628)
T ss_dssp             TSCSC-EEEEE---CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CCCce-EEeec---cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEec
Confidence            76444 33332   223456777765 45555555678999999877775555544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=3e-05  Score=66.28  Aligned_cols=207  Identities=14%  Similarity=0.105  Sum_probs=125.7

Q ss_pred             CEEEEEECCC-CCcEEEEecCCCcEEEEEccCCeeeeeeccc---cCCEEEEEE-------CCCCCEEEEEeCCC-----
Q 022910           66 EVYSVACSPT-DATLVATGGGDDKGFFWRINQGDWASEIQGH---KDSVSSLAF-------SMDGQLLASGGLDG-----  129 (290)
Q Consensus        66 ~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~i~~~~~-------~~~~~~l~~~~~dg-----  129 (290)
                      ....|+|.|. .++++++....+.|++.|+..+.....+...   ......++|       ++++++|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983 5666666665577999998887665544321   235899999       99999777766544     


Q ss_pred             --cEEEEcCCC-CceE-----EEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECC-------cccE----------
Q 022910          130 --LVQIWDPSS-GNLK-----CTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNAD-------RAAY----------  183 (290)
Q Consensus       130 --~i~i~d~~~-~~~~-----~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~-------~~~~----------  183 (290)
                        .|.+++... +...     ..+.... ....++++| ++.++++-...+.|+.+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266665433 2221     2222212 245678899 45566666678899999987       4432          


Q ss_pred             -EEe-ee-cCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEcC--CCCee--eEEEeCC---CC---------cccCeE-EE
Q 022910          184 -LNM-FS-GHGSSVTCGDFTPDGKTICTG-SDDATLRVWNP--KSGEN--IHVIRGH---PY---------HTEGLT-CL  242 (290)
Q Consensus       184 -~~~-~~-~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~--~~~~~--~~~~~~~---~~---------~~~~v~-~~  242 (290)
                       ... +. +.....+.|+|+|++++|+.+ +....|+.++.  ..+..  ...+.+.   ..         .-.... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             111 21 223456899999999965544 56778988654  33322  1233221   00         011234 45


Q ss_pred             EEc-------CCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          243 TIS-------ADSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       243 ~~~-------~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      +..       +++.++++=....+|+.++ .+|. +.++.
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~Tia  416 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYA  416 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEE
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEe
Confidence            554       4667777777788999998 4564 44443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=6.9e-05  Score=68.49  Aligned_cols=219  Identities=11%  Similarity=0.108  Sum_probs=135.6

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee--------------ccccCCEEEEEECCCCCEEEEEeCCC
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--------------QGHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      ...|.++...+ ++.+. .|+..+-|.+++..+.......              ......|.++...+++. |..|+.++
T Consensus       257 ~~~i~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~  333 (781)
T 3v9f_A          257 SSYIFSIKQLK-DNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGG  333 (781)
T ss_dssp             CCCEEEEEECT-TSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSS
T ss_pred             CceEEEEEECC-CCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCC
Confidence            35688888876 54444 4555456888888765432211              11345799999988876 55566566


Q ss_pred             cEEEEcCCCCceEEEEe---------cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee---ecCCCCeEEE
Q 022910          130 LVQIWDPSSGNLKCTLE---------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCG  197 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~---------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~  197 (290)
                      -|..++..+........         .....|.++...+++. |.+|+.++-|..|+..++......   ......|.++
T Consensus       334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i  412 (781)
T 3v9f_A          334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS  412 (781)
T ss_dssp             CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred             eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence            68889887655432211         1234689999888776 445665566889998765432211   1234678999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910          198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  277 (290)
                      ...+++.+ .+|+.++-|..|+..+++. ..+.........|.++...+++.+.+ |+. +-|.+|+..+++........
T Consensus       413 ~~d~~g~l-Wigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~  488 (781)
T 3v9f_A          413 LKDSEGNL-WFGTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTS  488 (781)
T ss_dssp             EECTTSCE-EEEETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTT
T ss_pred             EECCCCCE-EEEeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCc
Confidence            88877764 4567667799999877654 23321112346789999888877555 444 56889998776543332222


Q ss_pred             -----CCcEEEEEEecCC
Q 022910          278 -----TDSIECIGFSRSE  290 (290)
Q Consensus       278 -----~~~v~~i~~s~d~  290 (290)
                           ...|.++...++|
T Consensus       489 ~~~~~~~~i~~i~~d~~g  506 (781)
T 3v9f_A          489 NSQLLENFVRSIAQDSEG  506 (781)
T ss_dssp             TSSCSCSCEEEEEECTTC
T ss_pred             ccccccceeEEEEEcCCC
Confidence                 3567887766553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.66  E-value=8.1e-05  Score=67.66  Aligned_cols=180  Identities=10%  Similarity=-0.004  Sum_probs=116.5

Q ss_pred             CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEcCCCC----ceEEEEecCCCCEEEEEEcCC
Q 022910           86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSG----NLKCTLEGPGGGVEWVSWHPR  160 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~  160 (290)
                      ...|+..++........+. ....+..|+|.+....|+.+ ...+.|+.+++...    .....+.........|++.+.
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            3568888887655444443 34567899999866555544 45678888888753    233334434445678999877


Q ss_pred             CCE-EEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe-CC-CeEEEEcCCCCeeeEEEeCCCCccc
Q 022910          161 GHI-VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DD-ATLRVWNPKSGENIHVIRGHPYHTE  237 (290)
Q Consensus       161 ~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~  237 (290)
                      +.. +++-...+.|.+.++........+.........|++.|...+|+.+. .. +.|.+.++........+..   ...
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~---~l~  558 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---NIQ  558 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---SCS
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC---CCC
Confidence            654 44555678999999986654444444455689999999766666554 33 7899999865444333332   335


Q ss_pred             CeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCc
Q 022910          238 GLTCLTISADSTLALSG-SKDGSVHMVNITTGK  269 (290)
Q Consensus       238 ~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~  269 (290)
                      ..+.|++++.+..|+.+ ...+.|..+++....
T Consensus       559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            68899999866655555 445689999986443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.62  E-value=1.5e-05  Score=70.09  Aligned_cols=198  Identities=16%  Similarity=0.195  Sum_probs=126.1

Q ss_pred             CCcEEEEecCCCcEEEEEccCCeeeeeeccccCC---------EEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe
Q 022910           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDS---------VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE  146 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  146 (290)
                      ++.++++ +..+.|.-+|..+++.+.++......         ...+.+  .+..+++++.++.|..+|..+++.+-.+.
T Consensus        68 ~g~vyv~-~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~  144 (582)
T 1flg_A           68 DGVIYVT-ASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TTEEEEE-ETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             CCEEEEE-cCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence            4444444 44344999999999988776533211         011222  35678888889999999999999887765


Q ss_pred             cCCC----CEE---EEEEc-CCCC-EEEEeeC------CCeEEEEECCcccEEEeeecCCCCe-----------------
Q 022910          147 GPGG----GVE---WVSWH-PRGH-IVLAGSE------DSTVWMWNADRAAYLNMFSGHGSSV-----------------  194 (290)
Q Consensus       147 ~~~~----~i~---~i~~~-~~~~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i-----------------  194 (290)
                      ....    .+.   .+.=. .+++ .+++++.      +|.|+.+|..+++.+-........+                 
T Consensus       145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~  224 (582)
T 1flg_A          145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP  224 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred             CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence            4320    111   11111 1223 5666653      7899999999998776543211000                 


Q ss_pred             ------------------------EEEEEcCCCCEEEEEeC--------------------C----CeEEEEcCCCCeee
Q 022910          195 ------------------------TCGDFTPDGKTICTGSD--------------------D----ATLRVWNPKSGENI  226 (290)
Q Consensus       195 ------------------------~~~~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~~  226 (290)
                                              ..+++.|...+++++..                    |    +.|..+|..+++.+
T Consensus       225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~  304 (582)
T 1flg_A          225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK  304 (582)
T ss_dssp             TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred             cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence                                    13456677777877663                    2    58999999999998


Q ss_pred             EEEeCCCCcc-------cCeEEEEEc-CCC---CEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910          227 HVIRGHPYHT-------EGLTCLTIS-ADS---TLALSGSKDGSVHMVNITTGKVVSSLVSH  277 (290)
Q Consensus       227 ~~~~~~~~~~-------~~v~~~~~~-~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  277 (290)
                      ..++... |.       ....-+... .+|   ..|+.++.+|.++++|..+|+++..+...
T Consensus       305 W~~q~~~-~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~  365 (582)
T 1flg_A          305 WFYQHTP-NDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV  365 (582)
T ss_dssp             EEEESST-TCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred             EEEeCCC-CCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence            8876432 11       111112221 466   47888999999999999999999877643

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.61  E-value=1.6e-06  Score=78.91  Aligned_cols=154  Identities=14%  Similarity=0.188  Sum_probs=97.8

Q ss_pred             CEEEEEEC-CCCCEEEEEeC-CC----cEEEEcCCCC-ceEE-EEecCCCCEEEEEEcCCCCEEEEeeCC-----CeEEE
Q 022910          109 SVSSLAFS-MDGQLLASGGL-DG----LVQIWDPSSG-NLKC-TLEGPGGGVEWVSWHPRGHIVLAGSED-----STVWM  175 (290)
Q Consensus       109 ~i~~~~~~-~~~~~l~~~~~-dg----~i~i~d~~~~-~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i  175 (290)
                      .+...+|| |+|++||.+.. +|    .|+++|+.++ +.+. .+..   ....+.|+|+++.|+....+     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 99998876543 23    4999999998 6321 1111   12457899999888877654     36888


Q ss_pred             EECCcccE--EEeee-cCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEcCCCCe-ee--EEEeCCCCcccCeEEEEEcC
Q 022910          176 WNADRAAY--LNMFS-GHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGE-NI--HVIRGHPYHTEGLTCLTISA  246 (290)
Q Consensus       176 ~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~~~~~~~~~~v~~~~~~~  246 (290)
                      +++.+++.  ...+. ........+.|+|+|++|+..+.   ...|+++|+.++. ..  ..+...  .......+.|+.
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~s~~~~~  329 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR--EKGVRYDVQMHG  329 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC--CTTCCEEEEEET
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC--CCCceEEEeeee
Confidence            99877642  22222 22334677899999999886553   3468889988752 22  333221  234455666555


Q ss_pred             CCCEEEEEeCC----CcEEEEEcCC
Q 022910          247 DSTLALSGSKD----GSVHMVNITT  267 (290)
Q Consensus       247 ~~~~l~~~~~d----g~i~~wd~~~  267 (290)
                      .+.+++....+    ..|..+++.+
T Consensus       330 g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          330 TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            45555555443    3677777764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.61  E-value=1.3e-05  Score=70.51  Aligned_cols=193  Identities=12%  Similarity=0.128  Sum_probs=125.5

Q ss_pred             EEEEecC-CCcEEEEEc-cCCeeeeeeccccC----------C-EEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE
Q 022910           79 LVATGGG-DDKGFFWRI-NQGDWASEIQGHKD----------S-VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        79 ~l~~~~~-dg~i~iw~~-~~~~~~~~~~~~~~----------~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (290)
                      .+++++. ++.|.-+|. .+++.+.++.....          . ...+..  .+..+++++.++.|..+|..+++.+-.+
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  141 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWEV  141 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEEe
Confidence            3445555 789999999 89988876642211          0 011222  3567888888999999999999988776


Q ss_pred             ecCCC----CEEE-EEEcCCCCEEEEeeC------CCeEEEEECCcccEEEeeecCCCC---------------------
Q 022910          146 EGPGG----GVEW-VSWHPRGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGSS---------------------  193 (290)
Q Consensus       146 ~~~~~----~i~~-i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~---------------------  193 (290)
                      .....    .+.+ ...  .+..+++++.      ++.|+.+|.++++.+-++......                     
T Consensus       142 ~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~  219 (571)
T 2ad6_A          142 EVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL  219 (571)
T ss_dssp             ECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred             cCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccccc
Confidence            53220    1111 111  1345555554      799999999999987765532110                     


Q ss_pred             -----------------eEEEEEcCCCCEEEEEeCC----------------CeEEEEcCCCCeeeEEEeCCCC------
Q 022910          194 -----------------VTCGDFTPDGKTICTGSDD----------------ATLRVWNPKSGENIHVIRGHPY------  234 (290)
Q Consensus       194 -----------------i~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~------  234 (290)
                                       ...+++.+....++.++.+                +.|..+|..+++.+..++....      
T Consensus       220 g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~  299 (571)
T 2ad6_A          220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA  299 (571)
T ss_dssp             HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred             ccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccc
Confidence                             0235667766777776642                3699999999999888764320      


Q ss_pred             -cccCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          235 -HTEGLTCLTISADST---LALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       235 -~~~~v~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                       ...++ -+...++|+   .++.++.+|.++++|..+|+++..+..
T Consensus       300 ~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          300 GVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             CCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             cCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence             11222 122224673   677889999999999999999887753

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.60  E-value=0.00028  Score=62.64  Aligned_cols=207  Identities=10%  Similarity=0.031  Sum_probs=133.3

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc------ccCCEEEEEECCCCCEEE-EEeCCCcEEEEcCC
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG------HKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPS  137 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~  137 (290)
                      ..+.+|+|.+.++.++.+-...+.|+.++.........+..      ....+..+++...++.|+ +-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            45788999987777777777778898888765432222321      234678999988766554 55567889999986


Q ss_pred             CCceEEEE-ecCCCCEEEEEEcCC-CCEEEEeeCCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe-CC
Q 022910          138 SGNLKCTL-EGPGGGVEWVSWHPR-GHIVLAGSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DD  212 (290)
Q Consensus       138 ~~~~~~~~-~~~~~~i~~i~~~~~-~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d  212 (290)
                       ++....+ .......+.|+++|. +.++++-....  .|...++............-.....|++.+....|+.+. ..
T Consensus       420 -G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~  498 (628)
T 4a0p_A          420 -GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDL  498 (628)
T ss_dssp             -SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             -CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCC
Confidence             4444333 334567899999994 54444433222  577777764433333333345678999999877776554 46


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      +.|..+++... ....+...  ......++++.. +.++++=...+.|...+..+|+....+..
T Consensus       499 ~~I~~~~~dG~-~r~~~~~~--~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~~  558 (628)
T 4a0p_A          499 RRIESSDLSGA-NRIVLEDS--NILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQA  558 (628)
T ss_dssp             TEEEEEETTSC-SCEEEECS--SCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEEC
T ss_pred             CEEEEEeCCCC-ceEEEEcC--CCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEec
Confidence            88999998543 34444421  233456777764 55555555677898899887776555543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.58  E-value=4.7e-06  Score=74.64  Aligned_cols=114  Identities=14%  Similarity=0.166  Sum_probs=73.2

Q ss_pred             EEEECCCCCcEEEEecCCC-----------cEEEEEccCCeeee--eec-cccCCEEEEEECCCCCEEEEEeC-CCcEEE
Q 022910           69 SVACSPTDATLVATGGGDD-----------KGFFWRINQGDWAS--EIQ-GHKDSVSSLAFSMDGQLLASGGL-DGLVQI  133 (290)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i  133 (290)
                      ++++.|.++++++.|+.+.           .+.+||..+++...  .+. .+.....++++.++++.+++|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            4455554667777776542           58899988876433  222 12233445778889999999884 568999


Q ss_pred             EcCCCCceEEEEecCCC-CEEEEEEcCCCCEEEEee-CC-----CeEEEEECCccc
Q 022910          134 WDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGS-ED-----STVWMWNADRAA  182 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~  182 (290)
                      ||..+.+....-..+.. .-.+++..+++++++.|+ .+     ..+.+||..+.+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            99987754432221211 123455667899999988 34     468999987654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.58  E-value=5.9e-06  Score=70.03  Aligned_cols=153  Identities=8%  Similarity=0.107  Sum_probs=100.5

Q ss_pred             CEEEEEECC-CCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC-C----eEEEEECCccc
Q 022910          109 SVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-S----TVWMWNADRAA  182 (290)
Q Consensus       109 ~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g----~i~i~d~~~~~  182 (290)
                      ....|+++| ++..|+++...+.|+.+++..+....... .......++|++++++|+++... +    .+.+++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            346889998 45566666655889999988766544433 45568899999999966666542 2    3444443 232


Q ss_pred             EE--EeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEE-EEeCCC
Q 022910          183 YL--NMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDG  258 (290)
Q Consensus       183 ~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg  258 (290)
                      ..  ..+.. ......++++| ++.++++-...+.|+.|+...+.........  .......++|+|++++|+ +-...+
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~--~~~~P~gia~~pdG~~lyv~d~~~~  292 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ--DSGWEFHIQFHPSGNYAYIVVVNQH  292 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS--SSSCCEEEEECTTSSEEEEEETTTT
T ss_pred             eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC--CCCcceeEEEcCCCCEEEEEECCCC
Confidence            11  22221 23456788999 7777777777889999999876543332221  224577899999999554 445677


Q ss_pred             cEEEEEcC
Q 022910          259 SVHMVNIT  266 (290)
Q Consensus       259 ~i~~wd~~  266 (290)
                      .|+.++..
T Consensus       293 ~I~~~~~d  300 (430)
T 3tc9_A          293 YILRSDYD  300 (430)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEeCC
Confidence            89998765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.57  E-value=2.3e-05  Score=62.99  Aligned_cols=158  Identities=8%  Similarity=0.075  Sum_probs=110.2

Q ss_pred             EEEEEECCCCCEEEEEe-CCCcEEEEcCCCCceEEEEecC-----C--CCEEEEEE---cCCCCEEEEee----------
Q 022910          110 VSSLAFSMDGQLLASGG-LDGLVQIWDPSSGNLKCTLEGP-----G--GGVEWVSW---HPRGHIVLAGS----------  168 (290)
Q Consensus       110 i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-----~--~~i~~i~~---~~~~~~l~~~~----------  168 (290)
                      --+++|.+....|+.++ ..++|..|+...+......-..     .  ..+..|.|   .|+++++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            34688987666666665 6899999999766544332111     1  13578999   68877777644          


Q ss_pred             ---CCCeEEEEECC---cccEEEeee--c-----------CCCCeEEEEEcCCCCEEEEEeCC-CeEEEEcCCCCeeeEE
Q 022910          169 ---EDSTVWMWNAD---RAAYLNMFS--G-----------HGSSVTCGDFTPDGKTICTGSDD-ATLRVWNPKSGENIHV  228 (290)
Q Consensus       169 ---~dg~i~i~d~~---~~~~~~~~~--~-----------~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~  228 (290)
                         .+..|..||+.   +++.+....  .           .......++..++|+..++++.. +.|..++.... .+..
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~  173 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST  173 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence               25779999999   776554433  1           11347899999999999999988 99888887644 3332


Q ss_pred             Ee-CC--CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910          229 IR-GH--PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       229 ~~-~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                      +. ..  .......+.|+++|+|..|++....|.|..+|+.+.
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            22 11  112335779999999999988877999999998743

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.56  E-value=8.1e-05  Score=59.92  Aligned_cols=188  Identities=14%  Similarity=0.078  Sum_probs=111.9

Q ss_pred             cCEEEEEECCCCCcEEEEecCC--CcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 022910           65 DEVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (290)
                      ....++++.+ +++++++....  ..|..++..+++...... ........++..+.+..+++-...+.|+++|..+++.
T Consensus        72 ~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~  150 (306)
T 2p4o_A           72 GKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG  150 (306)
T ss_dssp             SEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence            4678999999 55565554332  246667777766543222 1122334555555554455544688999999876432


Q ss_pred             -EEEEe---------cCCCCEEEEEEcCCCCEEEEe-eCCCeEEEEECCc-ccE--EEeeecCCCCeEEEEEcCCCCEEE
Q 022910          142 -KCTLE---------GPGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNADR-AAY--LNMFSGHGSSVTCGDFTPDGKTIC  207 (290)
Q Consensus       142 -~~~~~---------~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~  207 (290)
                       +....         ........+  +|+++.|+++ ...+.|..|++.. ++.  ...+.. ......+++.++|++++
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~v  227 (306)
T 2p4o_A          151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYG  227 (306)
T ss_dssp             EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEE
T ss_pred             eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEE
Confidence             11111         111234555  7787766555 4568899999874 321  111111 13456788999998877


Q ss_pred             EEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEc---CCCCEEEEEeCCC
Q 022910          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS---ADSTLALSGSKDG  258 (290)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg  258 (290)
                      +....+.|.+++.. ++... +..........++++|.   |+++.|++++..+
T Consensus       228 a~~~~~~V~~~~~~-G~~~~-~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          228 ATHIYNSVVRIAPD-RSTTI-IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             ECBTTCCEEEECTT-CCEEE-EECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EeCCCCeEEEECCC-CCEEE-EeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            77778899999975 54422 22211123568999998   8877777766543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.54  E-value=0.00017  Score=58.69  Aligned_cols=192  Identities=9%  Similarity=0.110  Sum_probs=109.8

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEcc-CCe-eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRIN-QGD-WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (290)
                      +.+..+.+.+ .+.+++++. +|.|  |... .++ ...........+..+.+.+++.+++++...+.++-+|- .+..-
T Consensus       122 ~~~~~i~~~~-~~~~~~~~~-~g~v--~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW  196 (327)
T 2xbg_A          122 GSPRLIKALG-NGSAEMITN-VGAI--YRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAW  196 (327)
T ss_dssp             SCEEEEEEEE-TTEEEEEET-TCCE--EEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSC
T ss_pred             CCeEEEEEEC-CCCEEEEeC-CccE--EEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCce
Confidence            3467777765 556666554 4543  3222 222 22222345567899999998887777654433333442 12221


Q ss_pred             EEE-ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec----CCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 022910          143 CTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG----HGSSVTCGDFTPDGKTICTGSDDATLRV  217 (290)
Q Consensus       143 ~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i  217 (290)
                      ..+ ......+..+.+.+++..++ ++.+|.+++.....++.-..+..    ....+..+.+.+++.+++++ .+|.| +
T Consensus       197 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~  273 (327)
T 2xbg_A          197 EPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-L  273 (327)
T ss_dssp             EEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-E
T ss_pred             eECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-E
Confidence            222 23445688999999887654 45568887775443443333221    22358899999877766665 46766 3


Q ss_pred             EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      +....++....+.........+..+.|.+++. +++++.+|.|..++-
T Consensus       274 ~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          274 CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            44445555444442111235677888875554 556677888776653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.50  E-value=0.00052  Score=60.85  Aligned_cols=215  Identities=8%  Similarity=-0.012  Sum_probs=130.5

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceEE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      ..+.+++|.+.++.++++-...+.|+.+++........+...-.....+++...+. .+++-+..+.|.+.++.......
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~  428 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI  428 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence            35678889886677777776778888888876443333332334567888986555 44444567889999987654433


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEeeC--CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEcC
Q 022910          144 TLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNP  220 (290)
Q Consensus       144 ~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~  220 (290)
                      .+.........|++.|....|+.+..  .+.|...++............-.....|++++.+..|+.+ +..+.|..+++
T Consensus       429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~  508 (619)
T 3s94_A          429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT  508 (619)
T ss_dssp             EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred             EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence            33334456899999997555555443  3678777776543333333334567899999876666655 45678999998


Q ss_pred             CCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEE
Q 022910          221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI  284 (290)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i  284 (290)
                      ........+.....+   ...+++..+ .++++-...+.|...+..++.. ..+......+..|
T Consensus       509 dG~~~~~~~~~~l~~---P~glav~~~-~ly~tD~~~~~I~~~~k~~g~~-~~~~~~~~~~~~i  567 (619)
T 3s94_A          509 DGTGRRVLVEDKIPH---IFGFTLLGD-YVYWTDWQRRSIERVHKRSAER-EVIIDQLPDLMGL  567 (619)
T ss_dssp             SSCCCEEEEECCCCS---SCCEEEETT-EEEEECTTSSCEEEEESSSCCE-EEEECSCCCEEEE
T ss_pred             CCCceEEEeccCCCC---cEEEEEECC-EEEEeecCCCeEEEEEcCCCce-EEEecCCCCCcee
Confidence            654433333322113   234555433 4444444567888888887743 3333333344444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.49  E-value=0.00014  Score=61.55  Aligned_cols=204  Identities=14%  Similarity=0.195  Sum_probs=118.5

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCC---Cc-EEEEEccCCee-eeeeccccCCEEEEEECC-CCCEEEEEeCCCcEE
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGD---DK-GFFWRINQGDW-ASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQ  132 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~d---g~-i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~  132 (290)
                      .+........+++|++ ++.++++....   .. +..++...+.. ...+. .-.....++++| ++.++++-...+.|+
T Consensus       176 ~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~  253 (433)
T 4hw6_A          176 IKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMIS  253 (433)
T ss_dssp             EECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEE
T ss_pred             EeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEE
Confidence            3333445578899998 44555554321   12 32333222111 01111 223446688999 666555555678899


Q ss_pred             EEcCCCCceEEEE-ec-CCCCEEEEEEcCCCCEEEEe-eCCCeEEEEECCc--ccE--EEeeec---------------C
Q 022910          133 IWDPSSGNLKCTL-EG-PGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNADR--AAY--LNMFSG---------------H  190 (290)
Q Consensus       133 i~d~~~~~~~~~~-~~-~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~~---------------~  190 (290)
                      .++..++.....+ .. .......++|+|++++|+.+ ...+.|+.+++..  +..  ...+.+               .
T Consensus       254 ~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~  333 (433)
T 4hw6_A          254 SYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGAR  333 (433)
T ss_dssp             EECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSB
T ss_pred             EEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceE
Confidence            9999877763322 22 12233579999999955554 4567899988652  221  111111               1


Q ss_pred             CCCeEEEEE---------cCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC---------------cccCeEEEEEc-
Q 022910          191 GSSVTCGDF---------TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY---------------HTEGLTCLTIS-  245 (290)
Q Consensus       191 ~~~i~~~~~---------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~~~v~~~~~~-  245 (290)
                      -.....+++         .+++.++++-...+.|+.++. ++.. .++.+...               .-.....|+++ 
T Consensus       334 ~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~  411 (433)
T 4hw6_A          334 LWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM  411 (433)
T ss_dssp             CSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred             EcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence            124677999         777777777777889999986 5543 34332210               11236788888 


Q ss_pred             CCCCEEEEEeCCCcEEEEEcC
Q 022910          246 ADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       246 ~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      +++.++++=...++|+.+++.
T Consensus       412 ~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          412 KRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEecC
Confidence            566666666667788877753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.49  E-value=0.00015  Score=59.63  Aligned_cols=218  Identities=11%  Similarity=0.116  Sum_probs=120.2

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee--eeeec---cccCCEEEEEECCC---CCEEEEEeC-C-----C
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEIQ---GHKDSVSSLAFSMD---GQLLASGGL-D-----G  129 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~---~~~~~i~~~~~~~~---~~~l~~~~~-d-----g  129 (290)
                      -..-..++|.| ++.++++ ...|.|++++  .++.  +..+.   ........|+|+|+   +.+|+++.. .     +
T Consensus        30 l~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           30 LEVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CSCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            34567999999 6666655 4569999988  3332  11111   12456889999998   555555443 2     5


Q ss_pred             cEEEEcCCCCce-----E-EEEe---cCCCCEEEEEEcCCCCEEEEeeC-------------CCeEEEEECCcc------
Q 022910          130 LVQIWDPSSGNL-----K-CTLE---GPGGGVEWVSWHPRGHIVLAGSE-------------DSTVWMWNADRA------  181 (290)
Q Consensus       130 ~i~i~d~~~~~~-----~-~~~~---~~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~------  181 (290)
                      .|..|+...+..     + ..+.   ........++|.|+|.++++.+.             .|.|..++....      
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np  185 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP  185 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence            688888764421     1 1122   11112467999999976666432             256666665431      


Q ss_pred             ------cEEEeeecCCCCeEEEEEcC-CCCEEEEEeCCCe--------EEEEcCCC--------C--------eeeEEEe
Q 022910          182 ------AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDAT--------LRVWNPKS--------G--------ENIHVIR  230 (290)
Q Consensus       182 ------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------i~i~d~~~--------~--------~~~~~~~  230 (290)
                            .....+...-.....++|+| .+.++++-.....        |.+...-.        +        .+...+.
T Consensus       186 f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~  265 (352)
T 2ism_A          186 FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP  265 (352)
T ss_dssp             TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence                  00111111123457789999 6666655433332        33332111        0        0111111


Q ss_pred             CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc----E--EEEEccCCCcEEEEEEecCC
Q 022910          231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK----V--VSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----~--~~~~~~~~~~v~~i~~s~d~  290 (290)
                          .......++| .+|.++++.-..+.|...++....    .  ...+......++.+++.|||
T Consensus       266 ----~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG  326 (352)
T 2ism_A          266 ----QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDG  326 (352)
T ss_dssp             ----TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTS
T ss_pred             ----CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCC
Confidence                2234567777 367777766667788888776432    1  22222223678999999986

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.42  E-value=0.00043  Score=56.30  Aligned_cols=214  Identities=16%  Similarity=0.110  Sum_probs=117.4

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (290)
                      ...+.+|.|.+  +..++++ ..+.|.. ....++   .+.....+...+..+.+.+++..++++ ..|.|..- ...++
T Consensus        79 ~~~~~~i~~~~--~~~~~~g-~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~  152 (327)
T 2xbg_A           79 DYRFNSVSFQG--NEGWIVG-EPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGK  152 (327)
T ss_dssp             CCEEEEEEEET--TEEEEEE-ETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTS
T ss_pred             CccEEEEEecC--CeEEEEE-CCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCC
Confidence            34688899876  3445444 4554432 222232   111111233457788877666666555 45544332 23343


Q ss_pred             eEEEE-ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEEC--CcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 022910          141 LKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA--DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV  217 (290)
Q Consensus       141 ~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  217 (290)
                      .-... ......+..+.+.+++.+++++...+..+-.|-  .+-+.+.  ......+..+.+.+++.++ +++.+|.+++
T Consensus       153 tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~  229 (327)
T 2xbg_A          153 NWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAF  229 (327)
T ss_dssp             SEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred             CCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEE
Confidence            33222 334457899999998888877755444444442  2223332  2345678899999988755 4456788877


Q ss_pred             EcCCCCeeeEEEeCC-CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc---CCCcEEEEEEec
Q 022910          218 WNPKSGENIHVIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS---HTDSIECIGFSR  288 (290)
Q Consensus       218 ~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~v~~i~~s~  288 (290)
                      .....++....+... ......+..+.+.+++.+++++. +|.| ++....|+.-..+..   ....+.++.|.+
T Consensus       230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~  302 (327)
T 2xbg_A          230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS  302 (327)
T ss_dssp             EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE
T ss_pred             ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC
Confidence            643223332222211 01223588899998877776654 6766 345555554444432   234567777754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.34  E-value=0.00039  Score=56.94  Aligned_cols=209  Identities=11%  Similarity=0.111  Sum_probs=121.6

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEe------------cCCCcEEEEEccCC--eee-eeecc-----ccCCEEEEEECC-
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATG------------GGDDKGFFWRINQG--DWA-SEIQG-----HKDSVSSLAFSM-  117 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~------------~~dg~i~iw~~~~~--~~~-~~~~~-----~~~~i~~~~~~~-  117 (290)
                      .+.+-....-.++..| ++.+++++            ..+|.|.++|+.+.  +.. ..+.+     .......+.+.+ 
T Consensus        44 ~i~~~~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d  122 (355)
T 3sre_A           44 LVKGIDNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID  122 (355)
T ss_dssp             ECTTCCSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred             EeCCCCCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence            3444233445666777 56555554            26899999998742  211 12222     234677788765 


Q ss_pred             -CCC-EEEEEeC---CCcEEEEcCCCCce----EEEEec-CCCCEEEEEEcCCCCEEEEee-----------------CC
Q 022910          118 -DGQ-LLASGGL---DGLVQIWDPSSGNL----KCTLEG-PGGGVEWVSWHPRGHIVLAGS-----------------ED  170 (290)
Q Consensus       118 -~~~-~l~~~~~---dg~i~i~d~~~~~~----~~~~~~-~~~~i~~i~~~~~~~~l~~~~-----------------~d  170 (290)
                       ++. +|+++..   ..+|.+|++.....    +..+.+ .-...+.+.+.++|.++++..                 ..
T Consensus       123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~  202 (355)
T 3sre_A          123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW  202 (355)
T ss_dssp             TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred             CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc
Confidence             454 4555432   46777877654322    223332 223678999999998777654                 12


Q ss_pred             CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEcCCC-Cee--eEEEeCCCCcccCeEEEEEcC
Q 022910          171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKS-GEN--IHVIRGHPYHTEGLTCLTISA  246 (290)
Q Consensus       171 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~v~~~~~~~  246 (290)
                      |.|+.++..  + +..+...-.....++|+|+++.|+++. ..+.|..|++.. +..  ...+.    .......+++.+
T Consensus       203 g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~----~~g~PDGi~vD~  275 (355)
T 3sre_A          203 SFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS----FDTLVDNISVDP  275 (355)
T ss_dssp             EEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE----CSSEEEEEEECT
T ss_pred             cEEEEEECC--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe----CCCCCceEEEeC
Confidence            456666553  2 222222234568999999998887654 578999999863 322  22332    245678899999


Q ss_pred             -CCCEEEEEeCC-CcEEEEEcC--CCcEEEEEc
Q 022910          247 -DSTLALSGSKD-GSVHMVNIT--TGKVVSSLV  275 (290)
Q Consensus       247 -~~~~l~~~~~d-g~i~~wd~~--~~~~~~~~~  275 (290)
                       +|++.+++..+ +.|..|+..  .+..+.++.
T Consensus       276 e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          276 VTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             TTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             CCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence             59888866544 355555543  244555544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.31  E-value=0.00017  Score=58.51  Aligned_cols=160  Identities=14%  Similarity=0.232  Sum_probs=108.2

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCC----CC---EEEEeeC---CCeEEEEECC--cccEEEe
Q 022910          119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR----GH---IVLAGSE---DSTVWMWNAD--RAAYLNM  186 (290)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~----~~---~l~~~~~---dg~i~i~d~~--~~~~~~~  186 (290)
                      ..+++.....+-|.+||+ +++.++.+..  +.++.+..-|.    ++   ++++...   +++|.+|++.  +++ +..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            346666677788999999 8888888754  55777777663    22   2333333   5789999773  333 444


Q ss_pred             eec------CC-CCeEEEEE--cCC-CC-EEEEEeCCCeEEEEcCC-------CCeeeEEEeCCCCcccCeEEEEEcCCC
Q 022910          187 FSG------HG-SSVTCGDF--TPD-GK-TICTGSDDATLRVWNPK-------SGENIHVIRGHPYHTEGLTCLTISADS  248 (290)
Q Consensus       187 ~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~  248 (290)
                      +..      .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+.++.+.    ..+.+-.+...+..
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~----lgsq~EgcvvDd~~  191 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK----MNSQTEGMAADDEY  191 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE----CSSCEEEEEEETTT
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec----CCCCcceEEEcCCC
Confidence            421      11 55677787  774 44 67888889999999883       334556665    35678899999988


Q ss_pred             CEEEEEeCCCcEEEEEcC-----CCcEEEEEc-cC-CCcEEEEEE
Q 022910          249 TLALSGSKDGSVHMVNIT-----TGKVVSSLV-SH-TDSIECIGF  286 (290)
Q Consensus       249 ~~l~~~~~dg~i~~wd~~-----~~~~~~~~~-~~-~~~v~~i~~  286 (290)
                      ..|+.+-.+.-|..|+..     +++++..+. ++ ...+..|++
T Consensus       192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai  236 (355)
T 3amr_A          192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTI  236 (355)
T ss_dssp             TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEE
T ss_pred             CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEE
Confidence            899999998778888865     355666553 21 236777776

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.31  E-value=8e-05  Score=66.66  Aligned_cols=188  Identities=15%  Similarity=0.167  Sum_probs=111.9

Q ss_pred             EEEEEECCCCCcEEEEecC-CCcEEEEEccCCeeeeeeccccC-CEEEEEECCCCCEEEEEe-CC-----CcEEEEcCCC
Q 022910           67 VYSVACSPTDATLVATGGG-DDKGFFWRINQGDWASEIQGHKD-SVSSLAFSMDGQLLASGG-LD-----GLVQIWDPSS  138 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~  138 (290)
                      ..++++.+ ++.+++.|+. +..+.+||..+.+....-..+.. .-.++++.++++.++.|+ .+     ..+.+||..+
T Consensus       245 ~~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          245 CPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             SCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            34566777 7778888874 45899999988765543222221 123456667899888888 34     5689999877


Q ss_pred             CceEEE-------------------------EecCC---------------------------------------CCEEE
Q 022910          139 GNLKCT-------------------------LEGPG---------------------------------------GGVEW  154 (290)
Q Consensus       139 ~~~~~~-------------------------~~~~~---------------------------------------~~i~~  154 (290)
                      ++....                         +-+..                                       ..-.+
T Consensus       324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~a  403 (656)
T 1k3i_A          324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA  403 (656)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred             CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCce
Confidence            643321                         00000                                       01122


Q ss_pred             EEEc-CCCCEEEEeeCCC-----------eEEEEECCcccEEEee--ecCCC-CeEEEEEcCCCCEEEEEeCC-------
Q 022910          155 VSWH-PRGHIVLAGSEDS-----------TVWMWNADRAAYLNMF--SGHGS-SVTCGDFTPDGKTICTGSDD-------  212 (290)
Q Consensus       155 i~~~-~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~--~~~~~-~i~~~~~~~~~~~l~~~~~d-------  212 (290)
                      +.|. .+++++++|+.++           .|.+||..+.......  ..... .-.++...|+++++++|+.+       
T Consensus       404 v~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~  483 (656)
T 1k3i_A          404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED  483 (656)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             EeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence            3332 2567778877532           6788888776644432  11122 22345667899999998754       


Q ss_pred             ----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC
Q 022910          213 ----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       213 ----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  256 (290)
                          ..+.+||..+.+- ..+..............+.|++++++.|+.
T Consensus       484 ~~~~~~v~~ydp~t~~W-~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          484 STPVFTPEIYVPEQDTF-YKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CSBCCCCEEEEGGGTEE-EECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccceEEEcCCCCce-eecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                4689999876542 223222212223345566789999999985

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.23  E-value=0.0013  Score=56.21  Aligned_cols=205  Identities=12%  Similarity=0.079  Sum_probs=119.1

Q ss_pred             CEEEEEE-------CCCCCcEEEEecCCCc------EEEEEccC-Ceee-----eeeccccCCEEEEEECCCCC-EEEEE
Q 022910           66 EVYSVAC-------SPTDATLVATGGGDDK------GFFWRINQ-GDWA-----SEIQGHKDSVSSLAFSMDGQ-LLASG  125 (290)
Q Consensus        66 ~v~~~~~-------~~~~~~~l~~~~~dg~------i~iw~~~~-~~~~-----~~~~~~~~~i~~~~~~~~~~-~l~~~  125 (290)
                      ....|+|       ++++..++++...++.      |.+++... +...     ..+... .....++++|++. ++++-
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNS  265 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEE
Confidence            5789999       9844446655544422      55665333 2221     122222 2345778899544 55556


Q ss_pred             eCCCcEEEEcCC-------CCce-----------EEE-Eec-CCCCEEEEEEcCCCCEEEEe-eCCCeEEEEECC--ccc
Q 022910          126 GLDGLVQIWDPS-------SGNL-----------KCT-LEG-PGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNAD--RAA  182 (290)
Q Consensus       126 ~~dg~i~i~d~~-------~~~~-----------~~~-~~~-~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~--~~~  182 (290)
                      ...+.|..+++.       ++..           ... +.. .......|+|+|+++.|+.+ +....|+.++..  .+.
T Consensus       266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~  345 (496)
T 3kya_A          266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE  345 (496)
T ss_dssp             TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence            677889999987       5543           112 222 23446899999999965555 456788886653  322


Q ss_pred             E--EEeeecC---------------CCCeE-EEEEc-------CCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC----
Q 022910          183 Y--LNMFSGH---------------GSSVT-CGDFT-------PDGKTICTGSDDATLRVWNPKSGENIHVIRGHP----  233 (290)
Q Consensus       183 ~--~~~~~~~---------------~~~i~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----  233 (290)
                      .  ...+-+.               -.... .++..       +.+.++++=.....|+.++. ++. +.++.+..    
T Consensus       346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~  423 (496)
T 3kya_A          346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTS  423 (496)
T ss_dssp             ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHH
T ss_pred             ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEeccccccc
Confidence            1  0122111               01234 45554       45677777777889999994 554 44443320    


Q ss_pred             -------C----------cccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcEEEE
Q 022910          234 -------Y----------HTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVSS  273 (290)
Q Consensus       234 -------~----------~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~  273 (290)
                             .          .-.....|+++++ +.++++=....+|+.+++.....+..
T Consensus       424 ~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~  481 (496)
T 3kya_A          424 LADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG  481 (496)
T ss_dssp             HHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred             ccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence                   0          1124678999986 77776666778999999876555443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.23  E-value=6.8e-06  Score=73.93  Aligned_cols=178  Identities=10%  Similarity=-0.009  Sum_probs=108.0

Q ss_pred             CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe-CCCcEEEEcCCC----CceEEEEecCCCCEEEEEEcCC
Q 022910           86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSS----GNLKCTLEGPGGGVEWVSWHPR  160 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~----~~~~~~~~~~~~~i~~i~~~~~  160 (290)
                      .+.|+..++........+.. ...+..|+|.+.+..|+.+. ..+.|+.+++..    ......+.........|++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            35788888877665544443 33567899998777666654 457899998875    2222222222223456788754


Q ss_pred             C-CEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEcCCCCeeeEEEeCCCCccc
Q 022910          161 G-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-D-ATLRVWNPKSGENIHVIRGHPYHTE  237 (290)
Q Consensus       161 ~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~  237 (290)
                      + +++++-...+.|.++++........+.........|++.|.+.+|+.+.. . +.|.++++..... ..+...  ...
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~~--~l~  540 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTE--NIQ  540 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESCS--SCS
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEeC--CCC
Confidence            4 44455456788999998766544444333345678899996655554432 2 7888888754332 223211  234


Q ss_pred             CeEEEEEcCCCCE-EEEEeCCCcEEEEEcCC
Q 022910          238 GLTCLTISADSTL-ALSGSKDGSVHMVNITT  267 (290)
Q Consensus       238 ~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~  267 (290)
                      ..+.|+|+|++.. +++-+..+.|.++++..
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            4678999986554 44555567899999864

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.11  E-value=0.0028  Score=52.81  Aligned_cols=211  Identities=13%  Similarity=0.124  Sum_probs=136.0

Q ss_pred             EEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC-CceEEEEec
Q 022910           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTLEG  147 (290)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~  147 (290)
                      +.-.+| ..+.+|.-. ..++.||++.+...++.+.- ...|.--.|-.. +.|+..+ +..|+-|++.. ..+...+..
T Consensus        70 sAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR  144 (494)
T 1bpo_A           70 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDR  144 (494)
T ss_dssp             EEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred             eeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheec
Confidence            344678 556666543 58999999999888877763 446767777533 3455554 46799999974 356666654


Q ss_pred             C----CCCEEEEEEcCCCCEEEEeeC-------CCeEEEEECCcccEEEeeecCCCCeEEEEEcCC--C-CEEEEEeC--
Q 022910          148 P----GGGVEWVSWHPRGHIVLAGSE-------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD--G-KTICTGSD--  211 (290)
Q Consensus       148 ~----~~~i~~i~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~l~~~~~--  211 (290)
                      |    ...|..-..+++.++++..+-       .|.+.+|..+.+. .+.+.+|......+.+.-+  . .+|+.+..  
T Consensus       145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~  223 (494)
T 1bpo_A          145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ  223 (494)
T ss_dssp             CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred             chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence            4    345777777888998776542       4778899987553 4555666554444433211  1 23333333  


Q ss_pred             -CCeEEEEcCCCC---ee---eEE---EeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcE
Q 022910          212 -DATLRVWNPKSG---EN---IHV---IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI  281 (290)
Q Consensus       212 -dg~i~i~d~~~~---~~---~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v  281 (290)
                       .+.++|.++...   ..   .+.   +........-..++..++.-..++.-+.-|.|++||+.++.++..-+-...+|
T Consensus       224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~i  303 (494)
T 1bpo_A          224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI  303 (494)
T ss_dssp             TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCce
Confidence             378999988543   11   111   11111234456788899888889999999999999999999988766555555


Q ss_pred             EEEE
Q 022910          282 ECIG  285 (290)
Q Consensus       282 ~~i~  285 (290)
                      ..-+
T Consensus       304 F~t~  307 (494)
T 1bpo_A          304 FVTA  307 (494)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            4433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.10  E-value=0.0027  Score=52.14  Aligned_cols=220  Identities=10%  Similarity=0.077  Sum_probs=123.6

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-eeeeec---cccCCEEEEEECCC---CCEEEEEeC----C----
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQ---GHKDSVSSLAFSMD---GQLLASGGL----D----  128 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~---~~~~~i~~~~~~~~---~~~l~~~~~----d----  128 (290)
                      -.....++|.| ++.++++ ...|.|++++ ..++ .+..+.   ........|+|+|+   +..|+++..    +    
T Consensus        28 l~~P~~ia~~p-dG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLG-GGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEE-TTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcC-CCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            45678999999 6666655 4559999887 3444 222211   12356889999997   555555443    2    


Q ss_pred             CcEEEEcCCCC--c-----eE-EEEec-CCCCEEEEEEcCCCCEEEEeeC-------------CCeEEEEECCccc----
Q 022910          129 GLVQIWDPSSG--N-----LK-CTLEG-PGGGVEWVSWHPRGHIVLAGSE-------------DSTVWMWNADRAA----  182 (290)
Q Consensus       129 g~i~i~d~~~~--~-----~~-~~~~~-~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~----  182 (290)
                      ..|..|+....  .     .+ ..+.. .......|+|.|+|.++++.+.             .|.|..++....-    
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            56777776544  1     11 11221 1112467999999987776432             2456666654320    


Q ss_pred             ---EEEee-ecCCCCeEEEEEcC-CCCEEEEEeCCC---eEEEEcCCC--------C--------eeeEEEeCCCCcccC
Q 022910          183 ---YLNMF-SGHGSSVTCGDFTP-DGKTICTGSDDA---TLRVWNPKS--------G--------ENIHVIRGHPYHTEG  238 (290)
Q Consensus       183 ---~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~--------~--------~~~~~~~~~~~~~~~  238 (290)
                         ....+ .++ .....++|+| .++++++-....   .|.+...-.        +        .++..+..   ....
T Consensus       185 pf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~---~~~a  260 (354)
T 3a9g_A          185 PFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS---ETWA  260 (354)
T ss_dssp             SSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT---CCCC
T ss_pred             CCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC---CCcC
Confidence               01111 122 3456899999 666555533222   244332110        0        11111110   2345


Q ss_pred             eEEEEEc-------CCCCEEEEEeCCCcEEEEEcCCC-cEE--EEEc-cCCCcEEEEEEecCC
Q 022910          239 LTCLTIS-------ADSTLALSGSKDGSVHMVNITTG-KVV--SSLV-SHTDSIECIGFSRSE  290 (290)
Q Consensus       239 v~~~~~~-------~~~~~l~~~~~dg~i~~wd~~~~-~~~--~~~~-~~~~~v~~i~~s~d~  290 (290)
                      ...++|.       .+|.++++.-..+.|...++... +..  ..+. .....+..+++.|||
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG  323 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG  323 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC
Confidence            7788884       46777777777788999998753 332  2332 224578999999986

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=98.09  E-value=0.00086  Score=55.66  Aligned_cols=147  Identities=14%  Similarity=0.145  Sum_probs=97.3

Q ss_pred             CCCCCEEEEEeCCCcEEEEcCCCCceEEEEecC----CCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---------
Q 022910          116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP----GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---------  182 (290)
Q Consensus       116 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---------  182 (290)
                      +.++..++.+- ++.||.-++.....-+.++..    ...|..+..+|+|++||..+. ..|.|..+..+.         
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            34566555544 477888777744444455443    235788999999999999876 578888876221         


Q ss_pred             ---EEEeeec------CCCCeEEEEEcC---CCCEEEEEeCCCeEEEEcCCCCe-eeEEEeCC------CCcccCeEEEE
Q 022910          183 ---YLNMFSG------HGSSVTCGDFTP---DGKTICTGSDDATLRVWNPKSGE-NIHVIRGH------PYHTEGLTCLT  243 (290)
Q Consensus       183 ---~~~~~~~------~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~------~~~~~~v~~~~  243 (290)
                         ..+.+.-      ...+|..+.|+|   .+..|++-..|+.|++||+.... ....+...      ......|.+++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence               1122222      257899999999   45789999999999999998522 11233211      11225688999


Q ss_pred             EcCCCCEEEEEe--CCCcEEEEE
Q 022910          244 ISADSTLALSGS--KDGSVHMVN  264 (290)
Q Consensus       244 ~~~~~~~l~~~~--~dg~i~~wd  264 (290)
                      |.+++-.|+..+  ..|.|+..-
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEES
T ss_pred             EcCCCcEEEEEecCCCCCEEEEC
Confidence            998777666644  677776543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.08  E-value=0.00081  Score=53.91  Aligned_cols=191  Identities=16%  Similarity=0.251  Sum_probs=104.7

Q ss_pred             CCcEEEEecCC----CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCC------CcEEEEcCCCCceEE
Q 022910           76 DATLVATGGGD----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLKC  143 (290)
Q Consensus        76 ~~~~l~~~~~d----g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~  143 (290)
                      ++.+++.|+.+    ..+.+||..+.+....  +.........+.+  +++.++.|+.+      ..+.+||+.+.+...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            55677777754    5688899888765432  2211122222233  66677777654      468899998876443


Q ss_pred             EEecCC--CCEEEEEEcCCCCEEEEeeC---------CCeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEe
Q 022910          144 TLEGPG--GGVEWVSWHPRGHIVLAGSE---------DSTVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       144 ~~~~~~--~~i~~i~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      .-....  ....++.+  ++++++.|+.         -..+.+||+.+.+-...  +......-..+.+  ++++++.|+
T Consensus       133 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG  208 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGG  208 (306)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             CCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeC
Confidence            221111  11222222  5677777764         34588999987753332  2111122222333  566666665


Q ss_pred             CC-----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc--EEEEEc
Q 022910          211 DD-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK--VVSSLV  275 (290)
Q Consensus       211 ~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~--~~~~~~  275 (290)
                      .+     ..+.+||+.+.+ ...+...+........+.+  ++++++.|+.+     ..+.+||+.+.+  .+..+.
T Consensus       209 ~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~  282 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR  282 (306)
T ss_dssp             EETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred             CCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence            43     358899998754 2233222222223333333  67788888754     468999988754  444444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.04  E-value=0.00059  Score=54.58  Aligned_cols=185  Identities=14%  Similarity=0.193  Sum_probs=101.8

Q ss_pred             CCcEEEEecCC-----CcEEEEEccCCe---eeee--eccccCCEEEEEECCCCCEEEEEeCC-----CcEEEEcCCCCc
Q 022910           76 DATLVATGGGD-----DKGFFWRINQGD---WASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGN  140 (290)
Q Consensus        76 ~~~~l~~~~~d-----g~i~iw~~~~~~---~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  140 (290)
                      ++.+++.|+.+     ..+.+||+.+.+   ....  +.........+.+  +++.++.|+.+     ..+.+||+.+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            45677777754     368899988765   3322  2222222222333  56666666543     368899988776


Q ss_pred             eEEEEecCC--CCEEEEEEcCCCCEEEEeeCC-----CeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeC
Q 022910          141 LKCTLEGPG--GGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSD  211 (290)
Q Consensus       141 ~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~  211 (290)
                      ....-....  ....++.+  ++++++.|+.+     ..+.+||+.+.+-...  +........++.+  ++.+++.|+.
T Consensus       140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~  215 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGF  215 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCC
Confidence            443322111  11222222  67777777754     4588999887754332  2211122233333  5666677765


Q ss_pred             C-----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 022910          212 D-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK  269 (290)
Q Consensus       212 d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~  269 (290)
                      +     ..+.+||+.+.+= ..+...+........+.+  ++++++.|+.+     ..|.+||+.+.+
T Consensus       216 ~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          216 DGTAHLSSVEAYNIRTDSW-TTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCcccceEEEEeCCCCcE-EECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            3     4689999987643 233322212222233333  67777777765     368889987654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.95  E-value=0.00086  Score=53.66  Aligned_cols=185  Identities=22%  Similarity=0.304  Sum_probs=100.5

Q ss_pred             CCcEEEEecCC-----CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCCC-----cEEEEcCCCCceEE
Q 022910           76 DATLVATGGGD-----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLKC  143 (290)
Q Consensus        76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~  143 (290)
                      ++.+++.|+.+     ..+.+||..+.+....  +.........+.+  ++..++.|+.++     .+.+||+.+.+...
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            55677777754     3588899887664432  2211112222233  566777776543     57788988775443


Q ss_pred             EEecC--CCCEEEEEEcCCCCEEEEeeCC-------CeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          144 TLEGP--GGGVEWVSWHPRGHIVLAGSED-------STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       144 ~~~~~--~~~i~~i~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      .-...  .....++.+  ++++++.|+.+       ..+.+||+.+.+-...  +.........+.+  ++.+++.|+.+
T Consensus       139 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  214 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHD  214 (302)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBS
T ss_pred             cCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCC
Confidence            22111  111222222  56777777642       3588999987653332  2211222223333  56677777654


Q ss_pred             -----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCc
Q 022910          213 -----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGK  269 (290)
Q Consensus       213 -----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~  269 (290)
                           ..+.+||+.+.+= ..+...+........+.+  ++++++.|+.++     .|.+||+.+.+
T Consensus       215 ~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNAW-RQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             SSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCCE-eeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence                 3688999987642 233322212222222333  677778877653     58999988764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.94  E-value=0.0056  Score=50.27  Aligned_cols=220  Identities=11%  Similarity=0.114  Sum_probs=120.4

Q ss_pred             CcCEEEEEECCCCCc-EEEEecCCCcEEEEEccCCeee---eee----ccccCCEEEEEECCC---CCEEEEEeC-----
Q 022910           64 SDEVYSVACSPTDAT-LVATGGGDDKGFFWRINQGDWA---SEI----QGHKDSVSSLAFSMD---GQLLASGGL-----  127 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~---~~~----~~~~~~i~~~~~~~~---~~~l~~~~~-----  127 (290)
                      -.....|+|.| ++. ++++ ...|.|++++.. +...   ..+    .........|+|+|+   +.+|+++..     
T Consensus        17 l~~P~~i~~~p-dG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           17 LDHPWALAFLP-DNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             ESSEEEEEECS-TTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred             CCCcEEEEEcC-CCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence            44668999999 666 6654 457999998853 3321   111    112346789999996   555554432     


Q ss_pred             ---CCcEEEEcCCCC--ce--EE-EEec------CCCCEEEEEEcCCCCEEEEeeC-------------CCeEEEEECCc
Q 022910          128 ---DGLVQIWDPSSG--NL--KC-TLEG------PGGGVEWVSWHPRGHIVLAGSE-------------DSTVWMWNADR  180 (290)
Q Consensus       128 ---dg~i~i~d~~~~--~~--~~-~~~~------~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~  180 (290)
                         ...|..|++...  ..  .. .+..      .......|+|.|+|.++++.+.             .|.|.-++...
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence               235666665433  11  11 1111      1112457999999975555433             24677777653


Q ss_pred             cc------------EEEeeecCCCCeEEEEEcC-CCCEEEEEeC-CCeEEEEcCCCCee---------------------
Q 022910          181 AA------------YLNMFSGHGSSVTCGDFTP-DGKTICTGSD-DATLRVWNPKSGEN---------------------  225 (290)
Q Consensus       181 ~~------------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~---------------------  225 (290)
                      .-            ....+...-.....++|.| .++++++-.. ++.=.|.-+..+..                     
T Consensus       174 ~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~  253 (353)
T 2g8s_A          174 EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK  253 (353)
T ss_dssp             CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred             CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence            20            1111221224578899999 5554444221 11112221111110                     


Q ss_pred             ----------eEEEeCCCCcccCeEEEEEcC-------CCCEEEEEeCCCcEEEEEcCCCcEEEE--E-ccCCCcEEEEE
Q 022910          226 ----------IHVIRGHPYHTEGLTCLTISA-------DSTLALSGSKDGSVHMVNITTGKVVSS--L-VSHTDSIECIG  285 (290)
Q Consensus       226 ----------~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~~wd~~~~~~~~~--~-~~~~~~v~~i~  285 (290)
                                +..+.    +...+..+.|..       ++.++++.-..+.|...++..++.+..  + ......+..|+
T Consensus       254 ~~~~~~~~~P~~~~~----~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~  329 (353)
T 2g8s_A          254 GEIVAGTEQPVFYWK----DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR  329 (353)
T ss_dssp             BSSCTTSCCCSEEES----SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred             CCCCCCccCCeEEeC----CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence                      11111    223567788864       477777777788898888876654433  2 22235799999


Q ss_pred             EecCC
Q 022910          286 FSRSE  290 (290)
Q Consensus       286 ~s~d~  290 (290)
                      +.|||
T Consensus       330 ~~pdG  334 (353)
T 2g8s_A          330 TGPDG  334 (353)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            99986

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.89  E-value=0.0017  Score=51.86  Aligned_cols=185  Identities=17%  Similarity=0.255  Sum_probs=100.3

Q ss_pred             CCcEEEEec-CC-----CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCC-----CcEEEEcCCCCc--
Q 022910           76 DATLVATGG-GD-----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGN--  140 (290)
Q Consensus        76 ~~~~l~~~~-~d-----g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~--  140 (290)
                      ++.+++.|+ .+     ..+.+||+.+.+....  +.........+.+  ++..++.|+.+     ..+.+||+.+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            445666666 32     3688999887764432  2211112222222  56677777654     468999998876  


Q ss_pred             -eEEEEecC--CCCEEEEEEcCCCCEEEEeeCC-----CeEEEEECCcccEEE--eeecCCCCeEEEEEcCCCCEEEEEe
Q 022910          141 -LKCTLEGP--GGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       141 -~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                       ....-...  ......+.+  ++.+++.|+.+     ..+.+||+.+.+-..  .+........++.+  ++++++.|+
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  167 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG  167 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence             43322111  111222222  57777777653     368899988765332  22212222223333  566667766


Q ss_pred             CC-----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 022910          211 DD-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK  269 (290)
Q Consensus       211 ~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~  269 (290)
                      .+     ..+.+||+.+.+= ..+...+........+.+  ++++++.|+.+     ..|.+||+.+.+
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHW-TNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCcccceEEEEeCCCCcE-EeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            54     4588999887643 233222212222233333  56777777764     468999987654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.88  E-value=0.00027  Score=57.42  Aligned_cols=191  Identities=13%  Similarity=0.052  Sum_probs=111.3

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeeccc-cCCEEEEEE--CCCCCEEEEE--eCCCcEEEEcCCCCceEEEEec----C
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQGH-KDSVSSLAF--SMDGQLLASG--GLDGLVQIWDPSSGNLKCTLEG----P  148 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~--~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~----~  148 (290)
                      .+++.++.||.|.-+|..+|+.+..++.. ..++....-  .+.+..++.+  +.||.|+.++..+|.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46778899999999999999999888744 122222111  0112234433  5799999999988855544432    1


Q ss_pred             CCCEEE---EEE-c----CCCCEEEEeeCCCeEEEEECCcccEEEeeecCCC--C-----eEEEEEc-----CCCCEEEE
Q 022910          149 GGGVEW---VSW-H----PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS--S-----VTCGDFT-----PDGKTICT  208 (290)
Q Consensus       149 ~~~i~~---i~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~-----i~~~~~~-----~~~~~l~~  208 (290)
                      ..++..   ... .    ..+..+++|+.+|.+...|+++++.+..+.....  .     ..|....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            222321   000 0    1456889999999999999999999988864321  0     1111111     12456778


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEe-----CCCCcccCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 022910          209 GSDDATLRVWNPKSGENIHVIR-----GHPYHTEGL-TCLTISADSTLALSGSKDGSVHMVNITTGKVVS  272 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  272 (290)
                      +..+..+.+.+ ++++ ...+.     ... ....+ .+-..+.++.+ ++++.||.|..+|..+|+.+.
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~-~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNV-LDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCT-TTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccc-cccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            87777787777 4553 21111     000 00000 00001224566 457889999999999998876

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.84  E-value=0.0021  Score=51.49  Aligned_cols=184  Identities=11%  Similarity=0.160  Sum_probs=100.1

Q ss_pred             CcEEEEecC--CCcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCC----CcEEEEcCCCCceEEEEecC
Q 022910           77 ATLVATGGG--DDKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD----GLVQIWDPSSGNLKCTLEGP  148 (290)
Q Consensus        77 ~~~l~~~~~--dg~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~  148 (290)
                      +.+++.|+.  ...+.+||..+.+....  +.........+.+  ++..++.|+.+    ..+.+||+.+.+....-...
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            456666765  35788999888765432  2211122222333  56677777654    67889999887644332211


Q ss_pred             C--CCEEEEEEcCCCCEEEEeeCC------CeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeC-------
Q 022910          149 G--GGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSD-------  211 (290)
Q Consensus       149 ~--~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~-------  211 (290)
                      .  .....+.+  ++.+++.|+.+      ..+.+||+.+.+-...  +........++.+  ++++++.|+.       
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSG  165 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTC
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcc
Confidence            1  11222222  67777787765      4589999987754332  2111122222223  5566666653       


Q ss_pred             --CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 022910          212 --DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK  269 (290)
Q Consensus       212 --dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~  269 (290)
                        -..+.+||+.+.+= ..+...+.....-..+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       166 ~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          166 RVLNSCEVYDPATETW-TELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             EECCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             cccceEEEeCCCCCeE-EECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence              34588999987642 333322212222223333  56777777653     368899987653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.82  E-value=0.005  Score=51.20  Aligned_cols=131  Identities=15%  Similarity=0.201  Sum_probs=90.7

Q ss_pred             CcEEEEEccCCeeeeeeccc----cCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc------------eEEEEec---
Q 022910           87 DKGFFWRINQGDWASEIQGH----KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN------------LKCTLEG---  147 (290)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~---  147 (290)
                      +.||.-++.....-+.+...    -..|..+..+|+|++||..+ +..|.|..+..+.            ....+..   
T Consensus        41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~  119 (452)
T 3pbp_A           41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE  119 (452)
T ss_dssp             TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred             CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence            67887787744333333321    23578899999999999987 4679998887332            1123332   


Q ss_pred             ---CCCCEEEEEEcCC---CCEEEEeeCCCeEEEEECCccc--EEEeee---------cCCCCeEEEEEcCCCCEEEEEe
Q 022910          148 ---PGGGVEWVSWHPR---GHIVLAGSEDSTVWMWNADRAA--YLNMFS---------GHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       148 ---~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~--~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                         ...+|..+.|||-   +..|++-..|+.|++||+....  +. .+.         .....|.+++|.+++-.|++.+
T Consensus       120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN  198 (452)
T ss_dssp             C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred             ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence               2467999999994   5689999999999999998631  11 221         1225788999999888888765


Q ss_pred             --CCCeEEEEc
Q 022910          211 --DDATLRVWN  219 (290)
Q Consensus       211 --~dg~i~i~d  219 (290)
                        ..|.|+-..
T Consensus       199 ~t~~GDIYAlc  209 (452)
T 3pbp_A          199 TTEGGDIFAFY  209 (452)
T ss_dssp             CTTSCEEEEES
T ss_pred             cCCCCCEEEEC
Confidence              789887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.74  E-value=0.0057  Score=49.16  Aligned_cols=185  Identities=13%  Similarity=0.140  Sum_probs=97.8

Q ss_pred             CCcEEEEecC-----C------CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCC--------CcEEEE
Q 022910           76 DATLVATGGG-----D------DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD--------GLVQIW  134 (290)
Q Consensus        76 ~~~~l~~~~~-----d------g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~  134 (290)
                      ++.+++.|+.     .      ..+.+||..+.+....  +.........+.+  ++..++.|+.+        ..+.+|
T Consensus        45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~  122 (315)
T 4asc_A           45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCY  122 (315)
T ss_dssp             TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEE
T ss_pred             CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEE
Confidence            5567777763     1      1277888887664332  2111111122222  56666666632        458899


Q ss_pred             cCCCCceEEEEecCC--CCEEEEEEcCCCCEEEEeeC------CCeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCC
Q 022910          135 DPSSGNLKCTLEGPG--GGVEWVSWHPRGHIVLAGSE------DSTVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       135 d~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~  204 (290)
                      |+.+.+-...-..+.  ....++.  .++++++.|+.      -..+.+||+.+.+-...  +........++.+  +++
T Consensus       123 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~  198 (315)
T 4asc_A          123 DRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGR  198 (315)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred             CCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCE
Confidence            998775432211111  1122222  35677777776      24689999987653322  2111112223333  567


Q ss_pred             EEEEEeCCC-----eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC--------------CcEEEEEc
Q 022910          205 TICTGSDDA-----TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD--------------GSVHMVNI  265 (290)
Q Consensus       205 ~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~~wd~  265 (290)
                      +++.|+.++     .+.+||+.+.+= ..+...+........+.+  ++++++.|+.+              ..|.+||+
T Consensus       199 iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~  275 (315)
T 4asc_A          199 IIVAAGVTDTGLTSSAEVYSITDNKW-APFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE  275 (315)
T ss_dssp             EEEEEEECSSSEEEEEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET
T ss_pred             EEEEeccCCCCccceEEEEECCCCeE-EECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC
Confidence            777777654     588999987642 333322212222233333  56777777763              24778998


Q ss_pred             CCCc
Q 022910          266 TTGK  269 (290)
Q Consensus       266 ~~~~  269 (290)
                      .+.+
T Consensus       276 ~~~~  279 (315)
T 4asc_A          276 EEKK  279 (315)
T ss_dssp             TTTE
T ss_pred             CCCh
Confidence            7764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.73  E-value=0.0061  Score=45.95  Aligned_cols=143  Identities=15%  Similarity=0.137  Sum_probs=85.2

Q ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE------EEEe--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC
Q 022910          108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK------CTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD  179 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~  179 (290)
                      ..+..++|+|++.+.++  .+|.|+-.+..+....      ..+-  +-. ...++.|.|++.+.++  .||.|+-++-.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            36779999998886666  6788877776553211      1111  111 1478999999988887  55999888753


Q ss_pred             cccE-------EEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe------eeEEEeCCCCcccCeEEEEEcC
Q 022910          180 RAAY-------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE------NIHVIRGHPYHTEGLTCLTISA  246 (290)
Q Consensus       180 ~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~v~~~~~~~  246 (290)
                      +...       ...-...=..+..|.+.|+|.+.++.  ++.++-....++.      ....+...  .-...+.+.|.+
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~--g~~~yr~l~f~~  191 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQG--GWDTFKFLFFSS  191 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESS--SGGGEEEEEECT
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccC--CcceEEEEEECC
Confidence            3211       01111112467999999999877776  7876544333221      11222211  222345577888


Q ss_pred             CCCEEEEEeCCCcEE
Q 022910          247 DSTLALSGSKDGSVH  261 (290)
Q Consensus       247 ~~~~l~~~~~dg~i~  261 (290)
                      ++.++++.  +|.|+
T Consensus       192 ~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          192 VGTLFGVQ--GGKFY  204 (236)
T ss_dssp             TSCEEEEE--TTEEE
T ss_pred             CCcEEEEe--CCeEE
Confidence            88877766  66544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.66  E-value=0.0042  Score=49.57  Aligned_cols=184  Identities=19%  Similarity=0.288  Sum_probs=97.2

Q ss_pred             CcEEEEecCC----CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCC-----CcEEEEcCCCCceEEEE
Q 022910           77 ATLVATGGGD----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        77 ~~~l~~~~~d----g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~  145 (290)
                      +.+++.|+.+    ..+.+||+.+.+....  +......-..+.+  ++..++.|+.+     ..+.+||..+.+....-
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3566666643    3588899887664332  2211111122223  56677777654     35888998877543322


Q ss_pred             ecCC--CCEEEEEEcCCCCEEEEeeCCC-----eEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeCC----
Q 022910          146 EGPG--GGVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDD----  212 (290)
Q Consensus       146 ~~~~--~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d----  212 (290)
                      ....  .....+.+  ++.+++.|+.++     .+.+||+.+.+-...  +........++.+  ++++++.|+.+    
T Consensus        94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  169 (302)
T 2xn4_A           94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASR  169 (302)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTT
T ss_pred             CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCC
Confidence            1111  11222222  567777777553     578899887653332  2211122222223  45666666532    


Q ss_pred             ---CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 022910          213 ---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK  269 (290)
Q Consensus       213 ---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~  269 (290)
                         ..+.+||+.+.+= ..+...+........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       170 ~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          170 QCLSTVECYNATTNEW-TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EECCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             ccccEEEEEeCCCCcE-EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence               3588999987642 222222212222223333  57777777764     368899987654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.63  E-value=0.0028  Score=60.43  Aligned_cols=200  Identities=13%  Similarity=0.138  Sum_probs=121.1

Q ss_pred             EEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC-CceEEEEecC
Q 022910           70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGP  148 (290)
Q Consensus        70 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~  148 (290)
                      .-.+| ..+++|.-. ..++.||++.+...+..+. ...+|.--.|-... .|+..+ +..|+-|++.. ..+...+..|
T Consensus        71 AIMnP-~~~iiALra-g~~lQiFnl~~k~klks~~-~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           71 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hccCC-CcceEEEec-CCeEEEeehHHhhhhcccc-cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence            34677 556666543 6899999999877777666 34567777886443 344444 45799999964 2344444333


Q ss_pred             ----CCCEEEEEEcCCCCEEEEee-------CCCeEEEEECCcccEEEeeecCCCCeEEEEEc--CCC-CEEEEEe---C
Q 022910          149 ----GGGVEWVSWHPRGHIVLAGS-------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT--PDG-KTICTGS---D  211 (290)
Q Consensus       149 ----~~~i~~i~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--~~~-~~l~~~~---~  211 (290)
                          ...|..-..+++.++++..+       -.|.+.+|..+.+. .+.+.+|......+.+.  +.. ..++.+.   .
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~  224 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence                34566677788888877644       34789999887543 33444454433333321  111 2222221   1


Q ss_pred             CCeEEEEcCCCC---eeeE------EEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          212 DATLRVWNPKSG---ENIH------VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       212 dg~i~i~d~~~~---~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      .+.++|.++...   .+..      .+........-..++..++.-..++.-+.-|.|++||+.++.++..-.
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (1630)
T ss_pred             CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence            368888887543   1111      111111123345677888877788888999999999999998765443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.62  E-value=0.0028  Score=50.84  Aligned_cols=185  Identities=15%  Similarity=0.181  Sum_probs=99.8

Q ss_pred             CCcEEEEecC----C-----CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCC-----CcEEEEcCCCC
Q 022910           76 DATLVATGGG----D-----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSG  139 (290)
Q Consensus        76 ~~~~l~~~~~----d-----g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  139 (290)
                      ++.+++.|+.    +     ..+.+||+.+.+....  +.........+.+  +++.++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4567777765    2     4588899887654432  2211122222333  56666666543     46888998877


Q ss_pred             ceEEEEecC--CCCEEEEEEcCCCCEEEEeeCC-----CeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEe
Q 022910          140 NLKCTLEGP--GGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       140 ~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      +....-...  .....++.+  ++.+++.|+.+     ..+.+||+.+.+-...  +........++.+  ++.+++.|+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  223 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG  223 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence            543321111  111222233  66777777754     4589999887653322  1111222233333  566677776


Q ss_pred             CC-----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 022910          211 DD-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK  269 (290)
Q Consensus       211 ~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~  269 (290)
                      .+     ..+.+||+.+.+= ..+...+........+.+  ++++++.|+.+     ..|.+||+.+.+
T Consensus       224 ~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETETW-TFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCccceEEEEeCCCCcE-EECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            54     4689999987642 223222212222223333  57777777754     468899987654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.58  E-value=0.022  Score=46.65  Aligned_cols=152  Identities=14%  Similarity=0.086  Sum_probs=91.5

Q ss_pred             EEEEEECCCCCEEEEE------------eCCCcEEEEcCCCC--ceEE-EEec-----CCCCEEEEEEcC--CCC-EEEE
Q 022910          110 VSSLAFSMDGQLLASG------------GLDGLVQIWDPSSG--NLKC-TLEG-----PGGGVEWVSWHP--RGH-IVLA  166 (290)
Q Consensus       110 i~~~~~~~~~~~l~~~------------~~dg~i~i~d~~~~--~~~~-~~~~-----~~~~i~~i~~~~--~~~-~l~~  166 (290)
                      .-.+...|+|..++++            ..+|.|.++|+.+.  +... .+.+     .......+.+.+  ++. +|++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            4566677776544444            16899999998742  3211 1222     123567777765  343 4444


Q ss_pred             eeC---CCeEEEEECCcc----cEEEeeecC-CCCeEEEEEcCCCCEEEEEe-----------------CCCeEEEEcCC
Q 022910          167 GSE---DSTVWMWNADRA----AYLNMFSGH-GSSVTCGDFTPDGKTICTGS-----------------DDATLRVWNPK  221 (290)
Q Consensus       167 ~~~---dg~i~i~d~~~~----~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~  221 (290)
                      +..   ...|.+|++...    ..+..+.+. -.....+.+.++|.++++..                 ..|.|+.|+..
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~  211 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  211 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence            432   457778776543    223333322 23578899999998777654                 13567777663


Q ss_pred             CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCC
Q 022910          222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITT  267 (290)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~  267 (290)
                        +. ..+..   .-...+.++|+||++.|+++. ..+.|+.|++..
T Consensus       212 --~~-~~~~~---~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          212 --DV-RVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             --CC-EEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             --eE-EEeec---CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence              22 22221   345678999999998777664 567999999863

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.57  E-value=0.0036  Score=50.21  Aligned_cols=185  Identities=17%  Similarity=0.236  Sum_probs=98.6

Q ss_pred             CCcEEEEecCC----CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeC----C-----CcEEEEcCCCCc
Q 022910           76 DATLVATGGGD----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGL----D-----GLVQIWDPSSGN  140 (290)
Q Consensus        76 ~~~~l~~~~~d----g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~----d-----g~i~i~d~~~~~  140 (290)
                      ++.+++.|+..    ..+.+||..+.+....  +.........+.+  ++..++.|+.    +     ..+.+||+.+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            45677777632    3688999887765432  2211111122222  5666666664    2     468889988775


Q ss_pred             eEEEEe--cCCCCEEEEEEcCCCCEEEEeeCC-----CeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeC
Q 022910          141 LKCTLE--GPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSD  211 (290)
Q Consensus       141 ~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~  211 (290)
                      ....-.  ........+.+  ++++++.|+.+     ..+.+||+.+.+-...  +......-.++.+  ++.+++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            433211  11111222222  66777777643     3588999887653322  2211122223333  5666667665


Q ss_pred             C-----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 022910          212 D-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK  269 (290)
Q Consensus       212 d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~  269 (290)
                      +     ..+.+||+.+.+= ..+...+........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       178 ~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            4     4588999876542 222222212222233333  67777777664     468999987654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.56  E-value=0.0095  Score=47.92  Aligned_cols=185  Identities=15%  Similarity=0.255  Sum_probs=96.8

Q ss_pred             CCcEEEEecC----CC-------cEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCC-------CcEEEEc
Q 022910           76 DATLVATGGG----DD-------KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-------GLVQIWD  135 (290)
Q Consensus        76 ~~~~l~~~~~----dg-------~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~i~d  135 (290)
                      ++.+++.|+.    ++       .+.+||..+.+....  +.........+.+  ++..++.|+.+       ..+.+||
T Consensus        56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd  133 (318)
T 2woz_A           56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYD  133 (318)
T ss_dssp             SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEE
T ss_pred             CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEe
Confidence            5667777773    12       177888877665432  2222222222333  56667777653       3578889


Q ss_pred             CCCCceEEEEecCCC--CEEEEEEcCCCCEEEEeeC------CCeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCE
Q 022910          136 PSSGNLKCTLEGPGG--GVEWVSWHPRGHIVLAGSE------DSTVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~  205 (290)
                      +.+.+....-.....  ...++.  .++.+++.|+.      -..+.+||+.+.+-...  +........++.+  ++++
T Consensus       134 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i  209 (318)
T 2woz_A          134 PVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKI  209 (318)
T ss_dssp             TTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred             CCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEE
Confidence            887754432211111  111222  36677777764      23589999987753332  2211122223333  5667


Q ss_pred             EEEEeCC-----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC--------------CcEEEEEcC
Q 022910          206 ICTGSDD-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD--------------GSVHMVNIT  266 (290)
Q Consensus       206 l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~~wd~~  266 (290)
                      ++.|+.+     ..+.+||+.+.+ ...+...+........+.+  ++++++.|+.+              ..+.+||+.
T Consensus       210 yv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~  286 (318)
T 2woz_A          210 VIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD  286 (318)
T ss_dssp             EEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETT
T ss_pred             EEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCC
Confidence            7777643     357789987654 2223222212222222333  56777777653              358899988


Q ss_pred             CCc
Q 022910          267 TGK  269 (290)
Q Consensus       267 ~~~  269 (290)
                      +.+
T Consensus       287 ~~~  289 (318)
T 2woz_A          287 KKE  289 (318)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.55  E-value=0.024  Score=46.42  Aligned_cols=187  Identities=16%  Similarity=0.122  Sum_probs=98.9

Q ss_pred             CcCEEEEEECCC---CCcEEEEecCC-----CcEEEEEccCCe-----ee-eeec---cccCCEEEEEECCCCCEEEEEe
Q 022910           64 SDEVYSVACSPT---DATLVATGGGD-----DKGFFWRINQGD-----WA-SEIQ---GHKDSVSSLAFSMDGQLLASGG  126 (290)
Q Consensus        64 ~~~v~~~~~~~~---~~~~l~~~~~d-----g~i~iw~~~~~~-----~~-~~~~---~~~~~i~~~~~~~~~~~l~~~~  126 (290)
                      ......|+|+|+   ++.++++-...     +.|..|+.....     .+ ..+.   ........++|.|+|.++++.+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            356789999994   35555554432     567778776431     11 1132   1112236899999997655543


Q ss_pred             C-------------CCcEEEEcCCCC------------ceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeE------E
Q 022910          127 L-------------DGLVQIWDPSSG------------NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTV------W  174 (290)
Q Consensus       127 ~-------------dg~i~i~d~~~~------------~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i------~  174 (290)
                      .             .|.|.-++....            .....+.........++|+| ++.++++-.....+      .
T Consensus       154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~de  233 (352)
T 2ism_A          154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDE  233 (352)
T ss_dssp             CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCE
T ss_pred             CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeE
Confidence            2             245666665430            01111221122366789999 56655543322221      1


Q ss_pred             EEECCccc------------------EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee------eEEEe
Q 022910          175 MWNADRAA------------------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN------IHVIR  230 (290)
Q Consensus       175 i~d~~~~~------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~  230 (290)
                      +.-+..+.                  ++..+. +......++| .++.++++....+.|...++.....      ...+.
T Consensus       234 i~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~  311 (352)
T 2ism_A          234 VNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL  311 (352)
T ss_dssp             EEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec
Confidence            22222221                  122221 2234567777 4666666666677888877654321      11221


Q ss_pred             CCCCcccCeEEEEEcCCCCEEEEEe
Q 022910          231 GHPYHTEGLTCLTISADSTLALSGS  255 (290)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~l~~~~  255 (290)
                      .   ....+..+++.|+|.++++..
T Consensus       312 ~---~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          312 S---GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             E---SSCCEEEEEECTTSCEEEEEC
T ss_pred             c---cCCCeeEEEECCCCcEEEEEe
Confidence            1   235688999999998777654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.54  E-value=0.01  Score=50.96  Aligned_cols=87  Identities=17%  Similarity=0.092  Sum_probs=59.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeC-CCeEEEEcCCCCee---------eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910          192 SSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGEN---------IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH  261 (290)
Q Consensus       192 ~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  261 (290)
                      .....+.++|+|+++++++. +.++.++|+.....         ...+.......-.....+|.++|....+---|..|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            34466889999999987654 77899999874211         001111111345677889999996666667899999


Q ss_pred             EEEcCCC----------cEEEEEccCC
Q 022910          262 MVNITTG----------KVVSSLVSHT  278 (290)
Q Consensus       262 ~wd~~~~----------~~~~~~~~~~  278 (290)
                      -|++...          ..+.++..|-
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~Y  429 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVHY  429 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred             EEeccHHHHHhcCccCCeeeecccccc
Confidence            9998754          4666676554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.50  E-value=0.0042  Score=46.79  Aligned_cols=142  Identities=14%  Similarity=0.121  Sum_probs=82.5

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCC--------EEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS--------VSSLAFSMDGQLLASGGLDGLVQIWDP  136 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (290)
                      ..+..++|+| ++.+.++  .+|.+.-.+..+.....-+. ....        -.++.|.|+|.+.++  .||.|+-++.
T Consensus        41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            4777999999 7777776  56776555544322111111 1112        368899999987777  4699988876


Q ss_pred             CCCceE------EEE-ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc------EEEeee-cCCCCeEEEEEcCC
Q 022910          137 SSGNLK------CTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA------YLNMFS-GHGSSVTCGDFTPD  202 (290)
Q Consensus       137 ~~~~~~------~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~-~~~~~i~~~~~~~~  202 (290)
                      .+....      ..+ ...=..+..|.+.|+|.+.++.  ++.++-....+..      ....+. ..-...+-+.|.|+
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~  192 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV  192 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence            442211      111 1111358999999999888777  7776543322111      011111 12223445668888


Q ss_pred             CCEEEEEeCCCeEE
Q 022910          203 GKTICTGSDDATLR  216 (290)
Q Consensus       203 ~~~l~~~~~dg~i~  216 (290)
                      +.++++.  +|.++
T Consensus       193 G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          193 GTLFGVQ--GGKFY  204 (236)
T ss_dssp             SCEEEEE--TTEEE
T ss_pred             CcEEEEe--CCeEE
Confidence            8777666  67544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.50  E-value=0.028  Score=45.80  Aligned_cols=229  Identities=9%  Similarity=0.094  Sum_probs=127.1

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee--eee----ccccCCEEEEEECCC---CCEEEEE-
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEI----QGHKDSVSSLAFSMD---GQLLASG-  125 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~----~~~~~~i~~~~~~~~---~~~l~~~-  125 (290)
                      .+..+...-..-..|+|.| ++.++++-...|.|++++...++..  ..+    .........|+|+|+   +.+|++. 
T Consensus        23 ~~~~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             eeEEeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            3444545556778999999 6777777665899999986555432  112    123456899999995   4444443 


Q ss_pred             --eCCCcEEEEcCCCC--------ceEE---EEec-CCCCEEEEEEcCCCCEEEEeeC-------------CCeEEEEEC
Q 022910          126 --GLDGLVQIWDPSSG--------NLKC---TLEG-PGGGVEWVSWHPRGHIVLAGSE-------------DSTVWMWNA  178 (290)
Q Consensus       126 --~~dg~i~i~d~~~~--------~~~~---~~~~-~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~  178 (290)
                        ..++.|.-|.+..+        ....   .+.. .......|.|.|+|.++++.+.             .|.|.-++.
T Consensus       102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~  181 (347)
T 3das_A          102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP  181 (347)
T ss_dssp             ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred             ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence              23455666655431        1111   1221 1123467999999987777542             355555555


Q ss_pred             Cccc-------EEEeee-cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEcCCCCe------------------eeEEEeC
Q 022910          179 DRAA-------YLNMFS-GHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGE------------------NIHVIRG  231 (290)
Q Consensus       179 ~~~~-------~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------------~~~~~~~  231 (290)
                      ...-       ....+. ++ .....++|+|++.++++=. .++.=.|.-+..+.                  ++..+..
T Consensus       182 dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~  260 (347)
T 3das_A          182 DGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST  260 (347)
T ss_dssp             TSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT
T ss_pred             CCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC
Confidence            4320       011222 33 3456899999877665532 22211221111111                  1111111


Q ss_pred             CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE----EEEEccCCCcEEEEEEecCC
Q 022910          232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV----VSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       232 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~i~~s~d~  290 (290)
                         +......++|. ++.+++..-..+.|....+.....    ...+.+..+.++.|+..|||
T Consensus       261 ---~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG  319 (347)
T 3das_A          261 ---DEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGD  319 (347)
T ss_dssp             ---TTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETT
T ss_pred             ---CCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCC
Confidence               11355677776 466666666667787777765432    23344445789999999987

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.49  E-value=0.017  Score=46.28  Aligned_cols=183  Identities=11%  Similarity=0.080  Sum_probs=97.5

Q ss_pred             cEEEEecCCCcEEEEEccCCeeee-eeccccCCEEEEEECCCCCEEEEEeC-----C------CcEEEEcCCCCceEEEE
Q 022910           78 TLVATGGGDDKGFFWRINQGDWAS-EIQGHKDSVSSLAFSMDGQLLASGGL-----D------GLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~-----d------g~i~i~d~~~~~~~~~~  145 (290)
                      .+++.|+  ..+.+||..+.+... .+..............++..++.|+.     .      ..+.+||..+.+....-
T Consensus         6 ~l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            6 LIFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            3555666  679999999887643 12212122233334457777777773     1      12778888877643221


Q ss_pred             ecCCC--CEEEEEEcCCCCEEEEeeCC--------CeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeC-C
Q 022910          146 EGPGG--GVEWVSWHPRGHIVLAGSED--------STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSD-D  212 (290)
Q Consensus       146 ~~~~~--~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~-d  212 (290)
                      .....  ....+.+  ++.+++.|+.+        ..+.+||+.+.+-...  +........++.  -++++++.|+. +
T Consensus        84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~  159 (315)
T 4asc_A           84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGS  159 (315)
T ss_dssp             CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCT
T ss_pred             CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCC
Confidence            11111  1112222  56677777732        4589999987653322  211112222222  25566667765 2


Q ss_pred             -----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCc
Q 022910          213 -----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGK  269 (290)
Q Consensus       213 -----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~  269 (290)
                           ..+.+||+.+.+= ..+...+........+.+  ++++++.|+.++     .+.+||+.+.+
T Consensus       160 ~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEW-KELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCeE-EECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence                 4689999887542 222222111222223333  667888887654     58889987653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.44  E-value=0.026  Score=46.02  Aligned_cols=143  Identities=11%  Similarity=0.118  Sum_probs=83.6

Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE--EEee----ecCCCCeEEEEEcCC---CCEEEEE-e--C
Q 022910          144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMF----SGHGSSVTCGDFTPD---GKTICTG-S--D  211 (290)
Q Consensus       144 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~----~~~~~~i~~~~~~~~---~~~l~~~-~--~  211 (290)
                      .+...-...+.|+|.|++.++++--..|.|++++...++.  +..+    .........|+++|+   ..+|++. +  .
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            4444445688999999999777766589999998765543  2212    123456889999995   4455543 2  3


Q ss_pred             CCeEEEEcCCCC----------eee-EEEeCCCCcccCeEEEEEcCCCCEEEEEeC-------------CCcEEEEEcCC
Q 022910          212 DATLRVWNPKSG----------ENI-HVIRGHPYHTEGLTCLTISADSTLALSGSK-------------DGSVHMVNITT  267 (290)
Q Consensus       212 dg~i~i~d~~~~----------~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~~wd~~~  267 (290)
                      +..|.-|.+..+          +.+ ..+...  .......|.|.|+|.++++.+.             -|.|.-++...
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~--~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG  183 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKG--VIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG  183 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCC--SSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCC--CCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence            456666655431          111 112221  1223567999999987776542             35666666542


Q ss_pred             C---------cEEEEEccCCCcEEEEEEecCC
Q 022910          268 G---------KVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       268 ~---------~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .         ..+.. .+|. ....++|+|+|
T Consensus       184 ~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G  213 (347)
T 3das_A          184 EPAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQ  213 (347)
T ss_dssp             SBCTTCSSTTCCEEE-BCCS-BCCEEEECTTC
T ss_pred             CccCCCCCCCCeEEe-eCCC-CcceEEECCCC
Confidence            1         11221 2443 45678888864

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.39  E-value=0.031  Score=53.19  Aligned_cols=187  Identities=12%  Similarity=0.143  Sum_probs=108.9

Q ss_pred             ECCCCCcEEEEec----------CCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc
Q 022910           72 CSPTDATLVATGG----------GDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (290)
Q Consensus        72 ~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (290)
                      |......+|++|+          ..|.|++|++..++.....+ ...++|++++-. +| +|++|- ...|++|++...+
T Consensus       839 ~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~  915 (1158)
T 3ei3_A          839 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEK  915 (1158)
T ss_dssp             CTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTS
T ss_pred             EccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCc
Confidence            4332346777775          45889999997554332222 346788888754 45 444443 4789999998765


Q ss_pred             eEE-EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEE--CCcccEEEee-ecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910          141 LKC-TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN--ADRAAYLNMF-SGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (290)
Q Consensus       141 ~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  216 (290)
                      .+. ...... .+..+.....++++++|..-..|.++.  ....+....- ......++++.+-.+ ..++.+..+|.|.
T Consensus       916 ~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~  993 (1158)
T 3ei3_A          916 ELRTECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLF  993 (1158)
T ss_dssp             CEEEEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEE
T ss_pred             eEEEEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEE
Confidence            444 111121 233223333578899998877766654  3333332222 225567888888754 4778899999999


Q ss_pred             EEcCCCC-------eeeEEEeCCCCcccCeEEEE---EcCC---------CCEEEEEeCCCcEEEEE
Q 022910          217 VWNPKSG-------ENIHVIRGHPYHTEGLTCLT---ISAD---------STLALSGSKDGSVHMVN  264 (290)
Q Consensus       217 i~d~~~~-------~~~~~~~~~~~~~~~v~~~~---~~~~---------~~~l~~~~~dg~i~~wd  264 (290)
                      ++.....       +.+....... ....|+++.   +.+.         ...++.++.+|.|.+.-
T Consensus       994 vl~~~~~~~~~~~~~~L~~~~~fh-lG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A          994 VCQKDSAATTDEERQHLQEVGLFH-LGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp             EEEECTTCCSTTGGGBEEEEEEEE-CSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred             EEecCCCCCCccccceeeeEEEEe-CCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence            8865431       2222222111 345567765   2232         23467777888887653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.38  E-value=0.0042  Score=50.89  Aligned_cols=192  Identities=14%  Similarity=0.162  Sum_probs=96.6

Q ss_pred             CCcEEEEecC-C---------CcEEEEEccCCeeeeee--c-cccCCEEEEEECCCCCEEEEEeCC--------------
Q 022910           76 DATLVATGGG-D---------DKGFFWRINQGDWASEI--Q-GHKDSVSSLAFSMDGQLLASGGLD--------------  128 (290)
Q Consensus        76 ~~~~l~~~~~-d---------g~i~iw~~~~~~~~~~~--~-~~~~~i~~~~~~~~~~~l~~~~~d--------------  128 (290)
                      ++.+++.|+. +         ..+.+||+.+.+....-  . .......++.  .+++.++.|+.+              
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~  142 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA  142 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence            4567777765 2         46889998887654332  2 1112222233  367777777754              


Q ss_pred             -------------------------CcEEEEcCCCCceEEEEecCCC-CE-EEEEEcCCCCEEEEeeC------CCeEEE
Q 022910          129 -------------------------GLVQIWDPSSGNLKCTLEGPGG-GV-EWVSWHPRGHIVLAGSE------DSTVWM  175 (290)
Q Consensus       129 -------------------------g~i~i~d~~~~~~~~~~~~~~~-~i-~~i~~~~~~~~l~~~~~------dg~i~i  175 (290)
                                               ..+.+||+.+.+....-..... .. .+++.. ++.+++.|+.      ...+.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~  221 (357)
T 2uvk_A          143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFE  221 (357)
T ss_dssp             TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEE
T ss_pred             CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEE
Confidence                                     5788999988765433222211 11 222222 5667777764      345777


Q ss_pred             EEC--CcccEEE--eeecCCC--CeEEEEEcCCCCEEEEEeCC----------------------CeEEEEcCCCCeeeE
Q 022910          176 WNA--DRAAYLN--MFSGHGS--SVTCGDFTPDGKTICTGSDD----------------------ATLRVWNPKSGENIH  227 (290)
Q Consensus       176 ~d~--~~~~~~~--~~~~~~~--~i~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~  227 (290)
                      |++  .+.+-..  .+.....  ...++.+  ++.+++.|+.+                      ..+.+||+.+.+= .
T Consensus       222 ~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W-~  298 (357)
T 2uvk_A          222 LDFTGNNLKWNKLAPVSSPDGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW-D  298 (357)
T ss_dssp             EECC---CEEEECCCSSTTTCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C-E
T ss_pred             EEecCCCCcEEecCCCCCCcccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce-e
Confidence            887  4433222  2211111  1112222  56666676532                      2477899876532 2


Q ss_pred             EEeCCCCcccCeEEEEEcCCCCEEEEEeCCC------cEEEEEcCCCcEEEEEc
Q 022910          228 VIRGHPYHTEGLTCLTISADSTLALSGSKDG------SVHMVNITTGKVVSSLV  275 (290)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~  275 (290)
                      .+...+.....-.++.+  ++++++.|+.++      .|.++++.+++.+....
T Consensus       299 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          299 KSGELSQGRAYGVSLPW--NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             EEEECSSCCBSSEEEEE--TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eCCCCCCCcccceeEEe--CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            22221112222223333  678888888643      46667888887666544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.38  E-value=0.052  Score=46.15  Aligned_cols=103  Identities=16%  Similarity=0.214  Sum_probs=62.1

Q ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE--EEec------CCCCEEEEEEcCC---CCEEEEeeC-------
Q 022910          108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--TLEG------PGGGVEWVSWHPR---GHIVLAGSE-------  169 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~------~~~~i~~i~~~~~---~~~l~~~~~-------  169 (290)
                      .....|+|.|+|+++++-...+.|++++..+++...  .+..      ..+.+..|+|+|+   +..|+++..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            356799999999977765544579888866554332  2221      2345789999995   555555442       


Q ss_pred             ------CCeEEEEECCcc-------cEEE-eeec-CCCCeEEEEEcCCCCEEEEEe
Q 022910          170 ------DSTVWMWNADRA-------AYLN-MFSG-HGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       170 ------dg~i~i~d~~~~-------~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~  210 (290)
                            ...|..|++...       +.+. .+.. .......|+|.|+|.++++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  235666655321       1111 1221 123478999999998777654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.37  E-value=0.012  Score=52.91  Aligned_cols=194  Identities=14%  Similarity=0.164  Sum_probs=105.8

Q ss_pred             CCcEEEEecCC----CcEEEEEccCCeeeeee--------ccccCCEEEEEECCCCCEEEEEeCC------CcEEEEcCC
Q 022910           76 DATLVATGGGD----DKGFFWRINQGDWASEI--------QGHKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPS  137 (290)
Q Consensus        76 ~~~~l~~~~~d----g~i~iw~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~  137 (290)
                      ++.+++.|+.+    ..+.+||..+++....-        .........+.+..+++.++.|+.+      ..+.+||+.
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence            55677777753    46888998877654332        1111122233332266777777643      357889988


Q ss_pred             CCceEEEEecCCC-CEEEEEEcCCCCEEEEeeCCC--eEEEEECCcccEEEee-----ecCCCCeEEEEEcCC-CCEEEE
Q 022910          138 SGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDS--TVWMWNADRAAYLNMF-----SGHGSSVTCGDFTPD-GKTICT  208 (290)
Q Consensus       138 ~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~-~~~l~~  208 (290)
                      +.+....-..... .-.+++...++.+++.|+.++  .+.+||+.+.+-...-     ........++.+... +.+++.
T Consensus       477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~  556 (695)
T 2zwa_A          477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL  556 (695)
T ss_dssp             TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred             CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence            7654332111111 112233323788888888655  6999999887543322     112222233555554 566667


Q ss_pred             EeC--C-----CeEEEEcCCCCee-----eEEEeCCC-CcccCeEEEEEcCCCCEEEEEeC--------CCcEEEEEcCC
Q 022910          209 GSD--D-----ATLRVWNPKSGEN-----IHVIRGHP-YHTEGLTCLTISADSTLALSGSK--------DGSVHMVNITT  267 (290)
Q Consensus       209 ~~~--d-----g~i~i~d~~~~~~-----~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~~wd~~~  267 (290)
                      |+.  +     ..+.+||+.+..-     ...+...+ ........+.+ .++++++.|+.        ...|.+||+.+
T Consensus       557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            765  2     4688999987761     22222111 11122223333 33777777774        34699999887


Q ss_pred             CcE
Q 022910          268 GKV  270 (290)
Q Consensus       268 ~~~  270 (290)
                      .+-
T Consensus       636 ~~W  638 (695)
T 2zwa_A          636 ETL  638 (695)
T ss_dssp             TEE
T ss_pred             CeE
Confidence            653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.28  E-value=0.011  Score=48.49  Aligned_cols=116  Identities=12%  Similarity=0.113  Sum_probs=66.6

Q ss_pred             CCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE---Eee----ecCCCCeEEEEEcCC---CCEEEEEe-C-------
Q 022910          150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL---NMF----SGHGSSVTCGDFTPD---GKTICTGS-D-------  211 (290)
Q Consensus       150 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~----~~~~~~i~~~~~~~~---~~~l~~~~-~-------  211 (290)
                      .....|+|.|+++.|+++...|.|++++.. +...   ..+    .........|+++|+   +..|+++. .       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            357899999999834455567999999854 3221   111    112345789999995   45555443 2       


Q ss_pred             CCeEEEEcCCCC--e--eeE-EEeCCCC---cccCeEEEEEcCCCCEEEEEeC-------------CCcEEEEEcC
Q 022910          212 DATLRVWNPKSG--E--NIH-VIRGHPY---HTEGLTCLTISADSTLALSGSK-------------DGSVHMVNIT  266 (290)
Q Consensus       212 dg~i~i~d~~~~--~--~~~-~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~~wd~~  266 (290)
                      ...|..|++...  .  ... .+...+.   .......|+|.|+|.++++.+.             .|.|..++..
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence            235666666433  1  112 2222211   1122457999999976665443             2467777764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.28  E-value=0.1  Score=47.41  Aligned_cols=213  Identities=11%  Similarity=0.088  Sum_probs=119.1

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee-ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (290)
                      ...|.+|.-.. .+.+. .|+.+| +..||-.+.+..... ......|.++....++ .|..++.+| +..||..+.+..
T Consensus        21 ~n~V~~I~qD~-~G~lW-igT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~   95 (758)
T 3ott_A           21 ASVVSCFLQDS-EGLIW-IGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYE   95 (758)
T ss_dssp             CCCEEEEEECT-TSCEE-EEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEEC
T ss_pred             cceEEEEEECC-CCCEE-EEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEE
Confidence            56799998887 44433 455666 556664321111111 1123568888777665 566666665 789998776432


Q ss_pred             EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 022910          143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS----GHGSSVTCGDFTPDGKTICTGSDDATLRVW  218 (290)
Q Consensus       143 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  218 (290)
                      .........|.++... ++ .|..++.+ -|..|+..+.+......    .....|.++...+++.+.+ ++.. -|..|
T Consensus        96 ~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~  170 (758)
T 3ott_A           96 QPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRY  170 (758)
T ss_dssp             CCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEE
T ss_pred             CcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhC
Confidence            2111122347776543 44 55566665 68889987665432201    1235688888887777555 4544 47788


Q ss_pred             cCCCCeeeEEEeCCC---CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          219 NPKSGENIHVIRGHP---YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       219 d~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                      +..+++.. .+....   .....|.++...+++..|..|+. +-+..++..+++...........|.++...+
T Consensus       171 ~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~  241 (758)
T 3ott_A          171 IPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG  241 (758)
T ss_dssp             ETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT
T ss_pred             ccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC
Confidence            88766532 222111   01234888888777765555654 4588899876653221111123455555443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.20  E-value=0.049  Score=43.68  Aligned_cols=183  Identities=13%  Similarity=0.149  Sum_probs=93.9

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeee-eccccCCEEEEEECCCCCEEEEEeC----CC-------cEEEEcCCCCceEEEE
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGL----DG-------LVQIWDPSSGNLKCTL  145 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~~  145 (290)
                      .+++.|+.  .+.+||..+.+.... +..............++..++.|+.    ++       .+.+||..+.+....-
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   94 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP   94 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred             hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence            34555553  488999988775542 1111122222333457777777773    11       1778888776543321


Q ss_pred             ecC--CCCEEEEEEcCCCCEEEEeeCC-------CeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeC---
Q 022910          146 EGP--GGGVEWVSWHPRGHIVLAGSED-------STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSD---  211 (290)
Q Consensus       146 ~~~--~~~i~~i~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~---  211 (290)
                      ...  ......+.+  ++.+++.|+.+       ..+.+||+.+.+-...  +......-.++.  .++.+++.|+.   
T Consensus        95 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~  170 (318)
T 2woz_A           95 PLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDD  170 (318)
T ss_dssp             CBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESS
T ss_pred             CCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCC
Confidence            111  111222222  56777777753       2588899887654332  111111112222  25666666653   


Q ss_pred             ---CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 022910          212 ---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK  269 (290)
Q Consensus       212 ---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~  269 (290)
                         -..+.+||+.+.+= ..+...+........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       171 ~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          171 KKCTNRVFIYNPKKGDW-KDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             SCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CCccceEEEEcCCCCEE-EECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence               23589999987642 233222211222223333  56777777653     357788887654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.18  E-value=0.13  Score=46.71  Aligned_cols=192  Identities=11%  Similarity=0.182  Sum_probs=115.5

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      ...|.++.... ++. |..|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -|..++..+++.. 
T Consensus        62 ~~~i~~i~~d~-~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-  134 (758)
T 3ott_A           62 NTRIYCGVIID-NTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-  134 (758)
T ss_dssp             SSCEEEEEEET-TTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-
T ss_pred             CceEEEEEEcC-CCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-
Confidence            35688887766 444 44555555 788998876543321112335777654 344 56666655 5888888776543 


Q ss_pred             EEe-----cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-----CCCCeEEEEEcCCCCEEEEEeCCC
Q 022910          144 TLE-----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-----HGSSVTCGDFTPDGKTICTGSDDA  213 (290)
Q Consensus       144 ~~~-----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg  213 (290)
                      .+.     .....|.++....++.+.+ |+.. -|..++..+.+.......     ....|.++...+++..|.+|+. +
T Consensus       135 ~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~  211 (758)
T 3ott_A          135 SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-G  211 (758)
T ss_dssp             EECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred             EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-C
Confidence            231     1234688888887777555 4444 477888776653221111     1234888888777776666664 4


Q ss_pred             eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 022910          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (290)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  270 (290)
                      -|..|+..+++... +...  ....|.++...++|.+.+ |+. +-+.+++..+++.
T Consensus       212 Gl~~~~~~~~~~~~-~~~l--~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~  263 (758)
T 3ott_A          212 YLFQYFPSTGQIKQ-TEAF--HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPL  263 (758)
T ss_dssp             EEEEEETTTTEEEE-EEEE--EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCC
T ss_pred             CCeEEcCCCCeEEe-ccCC--CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcE
Confidence            58889987765322 2211  234588888888777665 444 4578888766543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.15  E-value=0.095  Score=44.53  Aligned_cols=111  Identities=11%  Similarity=0.108  Sum_probs=64.1

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee--eeecc------ccCCEEEEEECCC---CCEEEEE
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQG------HKDSVSSLAFSMD---GQLLASG  125 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~------~~~~i~~~~~~~~---~~~l~~~  125 (290)
                      +..+...-....+|+|.| ++.++++-...+.|++++...++..  ..+..      ....+..|+|+|+   +.+|+++
T Consensus        19 ~~~~a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           19 KKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             EEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             EEEEECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            333433344667999999 6777766554457888876544432  22221      2456789999995   5555554


Q ss_pred             eC-------------CCcEEEEcCCCC--c-----eEE-EEec-CCCCEEEEEEcCCCCEEEEee
Q 022910          126 GL-------------DGLVQIWDPSSG--N-----LKC-TLEG-PGGGVEWVSWHPRGHIVLAGS  168 (290)
Q Consensus       126 ~~-------------dg~i~i~d~~~~--~-----~~~-~~~~-~~~~i~~i~~~~~~~~l~~~~  168 (290)
                      ..             ...|.-|++...  +     .+. .+.. .......|+|.|+|.++++.+
T Consensus        98 ~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             EeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            32             134555554322  1     111 1221 123478899999998777644

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.90  E-value=0.13  Score=42.03  Aligned_cols=190  Identities=14%  Similarity=0.075  Sum_probs=101.9

Q ss_pred             CcCEEEEEECCC---CCcEEEEecC---C----CcEEEEEccCC-------eee-eeecc-ccCCEEEEEECCCCCEEEE
Q 022910           64 SDEVYSVACSPT---DATLVATGGG---D----DKGFFWRINQG-------DWA-SEIQG-HKDSVSSLAFSMDGQLLAS  124 (290)
Q Consensus        64 ~~~v~~~~~~~~---~~~~l~~~~~---d----g~i~iw~~~~~-------~~~-~~~~~-~~~~i~~~~~~~~~~~l~~  124 (290)
                      ......|+|+|+   ++.++++-+.   +    ..|..|+....       +.+ ..+.. .......|.|.|+|.++++
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            356789999995   4555555432   3    56777776543       111 11221 1112467999999986666


Q ss_pred             EeC-------------CCcEEEEcCCCCc-------eEEEEecCCCCEEEEEEcC-CCCEEEEeeCCC---eEEEEECCc
Q 022910          125 GGL-------------DGLVQIWDPSSGN-------LKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDS---TVWMWNADR  180 (290)
Q Consensus       125 ~~~-------------dg~i~i~d~~~~~-------~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg---~i~i~d~~~  180 (290)
                      .+.             .|.|.-++....-       ....+.........++|+| .+.++++-....   .|.+..--.
T Consensus       152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~  231 (354)
T 3a9g_A          152 TGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGG  231 (354)
T ss_dssp             CCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTC
T ss_pred             ECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCC
Confidence            432             2456655554220       0112221222356799999 566555432221   233322110


Q ss_pred             --------c--------cEEEeeecCCCCeEEEEEc-------CCCCEEEEEeCCCeEEEEcCCCC-eee--EEEeCCCC
Q 022910          181 --------A--------AYLNMFSGHGSSVTCGDFT-------PDGKTICTGSDDATLRVWNPKSG-ENI--HVIRGHPY  234 (290)
Q Consensus       181 --------~--------~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~~~  234 (290)
                              +        .++..+......+..++|.       .++.++++....+.|..+++... ...  ..+..  .
T Consensus       232 nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~--~  309 (354)
T 3a9g_A          232 NYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK--N  309 (354)
T ss_dssp             BCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT--T
T ss_pred             cCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc--C
Confidence                    0        1222221123457788884       46777777777788988888753 221  22221  1


Q ss_pred             cccCeEEEEEcCCCCEEEEEe
Q 022910          235 HTEGLTCLTISADSTLALSGS  255 (290)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~  255 (290)
                      ....+..+++.|+|.++++..
T Consensus       310 ~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          310 VFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCeeEEEECCCCcEEEEEe
Confidence            245688999999997776664

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.82  E-value=0.039  Score=45.06  Aligned_cols=91  Identities=18%  Similarity=0.306  Sum_probs=47.3

Q ss_pred             CCcEEEEecC-CCcEEEEEccC--Ceee--eeec-cccCCEEEEEECCCCCEEEEEeC-C---------CcEEEEcCCCC
Q 022910           76 DATLVATGGG-DDKGFFWRINQ--GDWA--SEIQ-GHKDSVSSLAFSMDGQLLASGGL-D---------GLVQIWDPSSG  139 (290)
Q Consensus        76 ~~~~l~~~~~-dg~i~iw~~~~--~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~-d---------g~i~i~d~~~~  139 (290)
                      ++.+++.|+. ...+.+||+.+  .+..  ..+. .......++.+  +++.++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            4566666654 34688888863  3322  2222 11112222333  5666666665 2         46889998887


Q ss_pred             ceEEEEecC-C--CCEEEEEEcCCCCEEEEeeCC
Q 022910          140 NLKCTLEGP-G--GGVEWVSWHPRGHIVLAGSED  170 (290)
Q Consensus       140 ~~~~~~~~~-~--~~i~~i~~~~~~~~l~~~~~d  170 (290)
                      +....-... .  ....++.  .++++++.|+.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            543322111 1  1222232  467788888754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.81  E-value=0.12  Score=41.24  Aligned_cols=170  Identities=8%  Similarity=0.037  Sum_probs=93.6

Q ss_pred             CCcEEEEecC-CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC--------------CcEEEEcCCCCc
Q 022910           76 DATLVATGGG-DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD--------------GLVQIWDPSSGN  140 (290)
Q Consensus        76 ~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~  140 (290)
                      ++.+.++... ++.|...+..... ...+...    .+--+++++.+|+-+...              ..|+..++..++
T Consensus        25 g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~   99 (302)
T 3s25_A           25 DGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG   99 (302)
T ss_dssp             TTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC
T ss_pred             CCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc
Confidence            4444444332 3445444443322 3333321    133457889988877543              367777777665


Q ss_pred             eEEEEecCCCCEEEEEEcCCCCEEEEee----CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-CCeE
Q 022910          141 LKCTLEGPGGGVEWVSWHPRGHIVLAGS----EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATL  215 (290)
Q Consensus       141 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i  215 (290)
                      ...... ..    ...|++++++|+-..    ....|+..++.... ..++..+..    ..++|+++.|+-.+. ...|
T Consensus       100 ~~~l~~-~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~I  169 (302)
T 3s25_A          100 STVLDP-DP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQL  169 (302)
T ss_dssp             CEEEEC-SC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCE
T ss_pred             ceEeec-CC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceE
Confidence            433322 21    236777888888765    34567777776544 333433322    345677888775554 6788


Q ss_pred             EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC--CcEEEEEcCC
Q 022910          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD--GSVHMVNITT  267 (290)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~wd~~~  267 (290)
                      .+.++..+.....+..      ... ..+.|++.+|+-....  ..|..-++..
T Consensus       170 y~~~l~g~~~~~l~~~------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          170 YRYDTASQSEALFYDC------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             EEEETTTTEEEEEECS------CEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred             EEEECCCCCEEEEeCC------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence            8888877665433322      111 2355877777665433  2455555543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.77  E-value=0.15  Score=40.73  Aligned_cols=174  Identities=5%  Similarity=-0.010  Sum_probs=98.4

Q ss_pred             EECCCCCcEEEEecCC-------------CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe----CCCcEEE
Q 022910           71 ACSPTDATLVATGGGD-------------DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----LDGLVQI  133 (290)
Q Consensus        71 ~~~~~~~~~l~~~~~d-------------g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~i  133 (290)
                      -+++.+..+..+...+             ..|+..++...+... +.  ...  +..|++++++|+-..    ....|+.
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LD--PDP--CIYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EE--CSC--EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-ee--cCC--ccEEEEeCCEEEEEeecCCCCceEEE
Confidence            4566455555555443             356666666554322 22  112  236777888888765    3445666


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      .++..... ..+..+..    ..++++++.|+-.+. ...|++.++..+.....+.   .... ..+.|++.+|+-....
T Consensus       134 ~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~  204 (302)
T 3s25_A          134 IRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVN  204 (302)
T ss_dssp             EETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGG
T ss_pred             EECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcC
Confidence            66664443 34443332    456777887776654 6789999987765443333   2222 3456888888765543


Q ss_pred             --CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC--CCcEEEEEcC
Q 022910          213 --ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK--DGSVHMVNIT  266 (290)
Q Consensus       213 --g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~  266 (290)
                        ..|..-++..... ..+..     ..+  ..|+|++.+|+-+..  .+.|..-++.
T Consensus       205 ~~~~I~~~~ldG~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          205 RDNAIVHVNINNPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             GTTEEEEECSSSCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred             CCcEEEEEECCCCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence              4677777765543 33332     223  236777777765532  3566666664

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.028  Score=45.63  Aligned_cols=112  Identities=15%  Similarity=0.122  Sum_probs=74.1

Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEEecC-CCCEEEEEEc--C-CCCEEEEe-eCCCeEEEEECCcccEEEeeec----C
Q 022910          120 QLLASGGLDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWH--P-RGHIVLAG-SEDSTVWMWNADRAAYLNMFSG----H  190 (290)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~--~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~----~  190 (290)
                      ..+++++.||.|+-+|..+|+.+-.++.. ..++....-.  + ++..++.. +.||.|+.++..++.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46888999999999999999998888754 1222221100  1 22334443 6899999999988854433321    2


Q ss_pred             CCCeEE---EEE-c----CCCCEEEEEeCCCeEEEEcCCCCeeeEEEeC
Q 022910          191 GSSVTC---GDF-T----PDGKTICTGSDDATLRVWNPKSGENIHVIRG  231 (290)
Q Consensus       191 ~~~i~~---~~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  231 (290)
                      .+++..   ..+ .    ..+..+++|+.+|.+...|+++|+.+..+..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            223321   000 0    1356789999999999999999999988874

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.56  E-value=0.28  Score=41.12  Aligned_cols=180  Identities=9%  Similarity=0.143  Sum_probs=113.4

Q ss_pred             CCcEEEEEccC-Ceeeeeeccc----cCCEEEEEECCCCCEEEEEeC-------CCcEEEEcCCCCceEEEEecCCCCEE
Q 022910           86 DDKGFFWRINQ-GDWASEIQGH----KDSVSSLAFSMDGQLLASGGL-------DGLVQIWDPSSGNLKCTLEGPGGGVE  153 (290)
Q Consensus        86 dg~i~iw~~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~i~  153 (290)
                      +..|+-|++.. ..+++.+..|    ...|.....+++.++++..+-       .|.+.+|..+.+. .+.+.+|.+...
T Consensus       124 ~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~  202 (494)
T 1bpo_A          124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFA  202 (494)
T ss_dssp             SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEE
T ss_pred             CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeE
Confidence            36799999864 3445555443    346777788899998775542       4788899987643 456677765443


Q ss_pred             EEEEcCC---CCEEEEeeC---CCeEEEEECCcc---c------EEEeee---cCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910          154 WVSWHPR---GHIVLAGSE---DSTVWMWNADRA---A------YLNMFS---GHGSSVTCGDFTPDGKTICTGSDDATL  215 (290)
Q Consensus       154 ~i~~~~~---~~~l~~~~~---dg~i~i~d~~~~---~------~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i  215 (290)
                      .+.+..+   ..+|+.+..   .+.+.|.++...   .      .+..+.   ....-..++..++.-..++.-+.-|.|
T Consensus       203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i  282 (494)
T 1bpo_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  282 (494)
T ss_dssp             EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceE
Confidence            3333211   124444443   378999998543   1      111111   123445688899988899999999999


Q ss_pred             EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 022910          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (290)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  269 (290)
                      ++||+.++.++..-+-   ....|-..+-.....-+++....|.|.-..+....
T Consensus       283 ~lyDleTgt~i~~nrI---s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          283 HLYDLETGTCIYMNRI---SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EEEETTTCCEEEEEEC---CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             EEEecccceeeeeecc---cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            9999999999877664   34555544444444445555577776666555433

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.32  E-value=0.1  Score=46.96  Aligned_cols=147  Identities=13%  Similarity=0.235  Sum_probs=81.4

Q ss_pred             CCcEEEEecCC------CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCCC--cEEEEcCCCCceEEEE
Q 022910           76 DATLVATGGGD------DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTL  145 (290)
Q Consensus        76 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~  145 (290)
                      ++.+++.|+.+      ..+.+||..+.+....  +...... .+++...++..++.|+.++  .+.+||+.+.+....-
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            44566666643      2477888887654432  2211111 2233324778888887654  6999999887644322


Q ss_pred             e-----cCCCCEEEEEEcCC-CCEEEEeeC--C-----CeEEEEECCccc------EEEeee---cCCCCeEEEEEcCCC
Q 022910          146 E-----GPGGGVEWVSWHPR-GHIVLAGSE--D-----STVWMWNADRAA------YLNMFS---GHGSSVTCGDFTPDG  203 (290)
Q Consensus       146 ~-----~~~~~i~~i~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~------~~~~~~---~~~~~i~~~~~~~~~  203 (290)
                      .     .......++.+... +.+++.|+.  +     ..+.+||+.+..      ......   .......++ ...++
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~  608 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPR  608 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETT
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCC
Confidence            1     11222233555554 667777765  2     458999998776      221111   111122223 33336


Q ss_pred             CEEEEEeC--------CCeEEEEcCCCCe
Q 022910          204 KTICTGSD--------DATLRVWNPKSGE  224 (290)
Q Consensus       204 ~~l~~~~~--------dg~i~i~d~~~~~  224 (290)
                      .+++.|+.        ...|.+||+.+.+
T Consensus       609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          609 KLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            67777764        3468999998764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.08  E-value=0.42  Score=46.17  Aligned_cols=198  Identities=10%  Similarity=0.122  Sum_probs=110.8

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccC-Ceeeeeeccc----cCCEEEEEECCCCCEEEEEe-------CCCcEEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGH----KDSVSSLAFSMDGQLLASGG-------LDGLVQI  133 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~dg~i~i  133 (290)
                      +|.--.|-.  ...|+..+ +..|+-|++.. ..+++.+..|    ...|..-..+++.++++..+       -.|.+.+
T Consensus       107 ~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQL  183 (1630)
T 1xi4_A          107 DVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL  183 (1630)
T ss_pred             CceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeee
Confidence            454555553  22333322 35799999864 2344444444    35677777788889877543       3588889


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEc--CC-CCEEEEeeC---CCeEEEEECCcc---c-EE-----Eeeec---CCCCeE
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWH--PR-GHIVLAGSE---DSTVWMWNADRA---A-YL-----NMFSG---HGSSVT  195 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~--~~-~~~l~~~~~---dg~i~i~d~~~~---~-~~-----~~~~~---~~~~i~  195 (290)
                      |..+.+. .+.+.+|.+....+...  +. ...++.+..   .+.+.|.++...   . ..     ..+..   ...-..
T Consensus       184 yS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv  262 (1630)
T 1xi4_A          184 YSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  262 (1630)
T ss_pred             eeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce
Confidence            9877543 33445554433333321  11 123332222   368888888543   1 11     11111   133345


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 022910          196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (290)
Q Consensus       196 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  270 (290)
                      ++..++.-..++.-+.-|.|.+||+.++.++..-+.   ...+|-..+-.....-+++....|.|.-..+.....
T Consensus       263 ~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri---s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             EEEeccccCEEEEEecCceEEEEecccchhhhhccc---cCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence            778888778888889999999999999988765443   333443333333333344444666666555554443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.01  E-value=1.1  Score=42.73  Aligned_cols=204  Identities=11%  Similarity=0.040  Sum_probs=110.1

Q ss_pred             EEEEecCCCcEEEEEccCCeeeeee-ccccCCEEEEEECCC------CCEEEEEeC-CCcEEEEcCCCCceEEEEecC-C
Q 022910           79 LVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMD------GQLLASGGL-DGLVQIWDPSSGNLKCTLEGP-G  149 (290)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~------~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-~  149 (290)
                      +++.++ .+.+.++.+..++..... ..-...|.|+++.|.      ++++++|.. |++|+|+++.+.+.+...... .
T Consensus       525 ~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~  603 (1158)
T 3ei3_A          525 QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE  603 (1158)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC
Confidence            344443 577888877755432211 123567999999763      368999997 999999999987766544322 1


Q ss_pred             CCEEEEEEc--CCCCEEEEeeCCCeEEEEECC--cccEEE--eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910          150 GGVEWVSWH--PRGHIVLAGSEDSTVWMWNAD--RAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (290)
Q Consensus       150 ~~i~~i~~~--~~~~~l~~~~~dg~i~i~d~~--~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  223 (290)
                      ....++.+.  ....+|.+|-.+|.+..+.+.  ++....  +..-...++.-..+...+..-+.+..+....+|--+ +
T Consensus       604 ~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~  682 (1158)
T 3ei3_A          604 IIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-H  682 (1158)
T ss_dssp             CCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-S
T ss_pred             CCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-C
Confidence            234444443  234588999999998766654  343322  122223455544444444433333334544455433 2


Q ss_pred             eeeEEEeCCCCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCc--EEEEEccCCCcEEEEEEecC
Q 022910          224 ENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTGK--VVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~i~~s~d  289 (290)
                      +..  +.... ...--....|+..  ..-++..+ ++.+++..+....  .+++++- ...++.++++|.
T Consensus       683 ~l~--~s~l~-~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~  747 (1158)
T 3ei3_A          683 KLV--FSNVN-LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEV  747 (1158)
T ss_dssp             SEE--EEEBS-SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGG
T ss_pred             ceE--EeccC-hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC-CCCceEEEEcCC
Confidence            221  11111 1112233345431  23344333 4568888875422  3444443 457788888774

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.74  E-value=0.55  Score=36.97  Aligned_cols=183  Identities=14%  Similarity=0.084  Sum_probs=92.1

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (290)
                      .|..++...  ...++. . +|.|+.|-......+..-..-...|..++...  .+.+... +|.|+.|-......+..-
T Consensus        64 ~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~  136 (282)
T 3qhy_B           64 GVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVP  136 (282)
T ss_dssp             CCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred             CEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCC
Confidence            566666543  223333 3 78888887654221111111124677776643  3444445 888999865542211111


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee
Q 022910          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN  225 (290)
Q Consensus       146 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  225 (290)
                      ......|..++.-..... + -. +|.|+.|-....-.+.........|..++....- .++.  .+|.|+.|=......
T Consensus       137 ~~~~~~i~~i~~G~~~~~-~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gq  210 (282)
T 3qhy_B          137 AEAQSGVTALDGGVYTAL-A-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQ  210 (282)
T ss_dssp             GGGGSSEEEEEECSSEEE-E-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTST
T ss_pred             ccCCCCeEEEEcccCEEE-E-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCC
Confidence            112235777765433322 2 23 6899999765422111111123467777665432 2333  589999996554322


Q ss_pred             eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910          226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      +.. .  ......|..++..... .++..  +|.|+.|=...
T Consensus       211 lg~-p--~~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~  246 (282)
T 3qhy_B          211 TTV-P--TEALSGVSAIASGEWY-SLALK--NGKVIAWGSSR  246 (282)
T ss_dssp             TCC-C--GGGGSSCCEEEECSSC-EEEEE--TTEEEEESTTC
T ss_pred             CCC-C--cccCCCceEEEcCCCE-EEEEE--CCEEEEecCCC
Confidence            211 1  0123456666655433 33333  89999996544

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.45  E-value=0.53  Score=37.08  Aligned_cols=182  Identities=17%  Similarity=0.079  Sum_probs=95.3

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (290)
                      .|..++...  ...++. . +|.|+.|-......+..-......|..++....  +.+... +|.|+.|-......+-.-
T Consensus        25 ~i~~ia~G~--~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~--hs~~l~-~G~v~~wG~n~~Gqlg~P   97 (282)
T 3qhy_B           25 GVDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY--HSLALK-DGEVIAWGGNEDGQTTVP   97 (282)
T ss_dssp             SCCEEEECS--SEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEeCC--CeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC--EEEEEE-CCEEEEeeCCCCCCCCCC
Confidence            577777653  233333 4 899999986653222111112345777766433  322234 899999976543221111


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee
Q 022910          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN  225 (290)
Q Consensus       146 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  225 (290)
                      ..-...|..++....  +.+.-. +|.|+.|-....-.+.........|..++....  ..++-. +|.|+.|-......
T Consensus        98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gq  171 (282)
T 3qhy_B           98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQ  171 (282)
T ss_dssp             GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTST
T ss_pred             cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCC
Confidence            111235777776543  333334 899999976542211111112345777766433  233333 79999997654322


Q ss_pred             eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      +.. .  ......|..++.... ..++.  .+|.|+.|=..
T Consensus       172 lg~-p--~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n  206 (282)
T 3qhy_B          172 TTV-P--AEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDN  206 (282)
T ss_dssp             TSC-C--GGGGSSEEEEEECSS-EEEEE--ETTEEEEEECC
T ss_pred             CCC-c--eecCCCeEEEEecCC-EEEEE--ECCeEEEEECC
Confidence            211 1  112345777766543 23333  48899998654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.30  E-value=0.15  Score=44.03  Aligned_cols=101  Identities=21%  Similarity=0.150  Sum_probs=68.8

Q ss_pred             CCEEEEEECCCCCEEEEEeC-CCcEEEEcCCCC------ce-------EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeE
Q 022910          108 DSVSSLAFSMDGQLLASGGL-DGLVQIWDPSSG------NL-------KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV  173 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~------~~-------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i  173 (290)
                      .....+.++|+|+++++++. +.++.++++.+.      +.       ..... ........+|.++|+...+-.-|..|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceE
Confidence            34467889999998877654 789999998742      11       22233 33457789999999666666789999


Q ss_pred             EEEECCcc----------cEEEeeecCCCCeEEEEE------cCCCCEEEEEe
Q 022910          174 WMWNADRA----------AYLNMFSGHGSSVTCGDF------TPDGKTICTGS  210 (290)
Q Consensus       174 ~i~d~~~~----------~~~~~~~~~~~~i~~~~~------~~~~~~l~~~~  210 (290)
                      ..|++...          ..+.++..|-.+ -.+.-      .|+|++|++..
T Consensus       402 vkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred             EEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence            99999764          355555544333 22322      46888888865

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.28  E-value=1  Score=37.14  Aligned_cols=219  Identities=14%  Similarity=0.076  Sum_probs=107.2

Q ss_pred             cCEEEEEECCCC-CcEEEEecCCCcEEEEEccCCe--eeeeec----------------cccCCEEEEEECCC-CCEEEE
Q 022910           65 DEVYSVACSPTD-ATLVATGGGDDKGFFWRINQGD--WASEIQ----------------GHKDSVSSLAFSMD-GQLLAS  124 (290)
Q Consensus        65 ~~v~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~--~~~~~~----------------~~~~~i~~~~~~~~-~~~l~~  124 (290)
                      ..|.++++.|.+ ...|..++..+.|...+-....  .+..+.                .....+.+|.+.|. ...|+.
T Consensus       115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v  194 (394)
T 3b7f_A          115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI  194 (394)
T ss_dssp             CEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred             cceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence            368889998743 3444455444544433211111  111110                01235789999874 344555


Q ss_pred             EeCCCcEEEEcCCCCceEEEEecC-------------CCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeeec-
Q 022910          125 GGLDGLVQIWDPSSGNLKCTLEGP-------------GGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSG-  189 (290)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  189 (290)
                      +...+-|...+ ..++.-..+...             ...+.++.++|. ...|+++...+ |+..+- .++.-..+.. 
T Consensus       195 g~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~  271 (394)
T 3b7f_A          195 GMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDA  271 (394)
T ss_dssp             EEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGG
T ss_pred             EECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCC
Confidence            54444454443 223322222110             124889999986 35666666544 544442 2332222221 


Q ss_pred             -CC---CCeEEEEEcC-CCCEEEEEeC-----------CCeEEEEcCCC-CeeeEEEeC-CCCcc----cCeEEEEEcCC
Q 022910          190 -HG---SSVTCGDFTP-DGKTICTGSD-----------DATLRVWNPKS-GENIHVIRG-HPYHT----EGLTCLTISAD  247 (290)
Q Consensus       190 -~~---~~i~~~~~~~-~~~~l~~~~~-----------dg~i~i~d~~~-~~~~~~~~~-~~~~~----~~v~~~~~~~~  247 (290)
                       ..   ..+.++.++| +...|+++..           ++...+|.... ++....+.. .+...    .....++++|.
T Consensus       272 l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~  351 (394)
T 3b7f_A          272 MPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAH  351 (394)
T ss_dssp             SCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCS
T ss_pred             CCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCC
Confidence             11   3456788887 3444555432           23344554443 333333321 11100    01235788874


Q ss_pred             -CCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEe
Q 022910          248 -STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS  287 (290)
Q Consensus       248 -~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s  287 (290)
                       ...|+.++..+.|..- ...++.-..+..+-..|.+|+|.
T Consensus       352 ~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          352 APVGVYFGTTGGEIWAS-ADEGEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             SSCCEEEECTTSCEEEE-SSTTSBCEEEECSCSCEEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEE-CCCCCCceEcccCCCCeeEEEEe
Confidence             4556677666666533 23455445555445578888875

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=94.66  E-value=1.6  Score=36.05  Aligned_cols=141  Identities=11%  Similarity=-0.004  Sum_probs=70.3

Q ss_pred             CEEEEEECCC--CCEEEEEeCCCcEEEEcCCCCceEEEEec-------------------CCCCEEEEEEcCC-CCEEEE
Q 022910          109 SVSSLAFSMD--GQLLASGGLDGLVQIWDPSSGNLKCTLEG-------------------PGGGVEWVSWHPR-GHIVLA  166 (290)
Q Consensus       109 ~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~~i~~i~~~~~-~~~l~~  166 (290)
                      .|.++++.|.  ...|+++...+-|...+- .++.-..+..                   ....+.+|.++|. ...|++
T Consensus       116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v  194 (394)
T 3b7f_A          116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI  194 (394)
T ss_dssp             EEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred             ceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence            5788999873  455666655565555532 2322222211                   1235788999883 344555


Q ss_pred             eeCCCeEEEEECCcccEEEeeec-C------------CCCeEEEEEcCC-CCEEEEEeCCCeEEEEcCCCCeeeEEEeCC
Q 022910          167 GSEDSTVWMWNADRAAYLNMFSG-H------------GSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGH  232 (290)
Q Consensus       167 ~~~dg~i~i~d~~~~~~~~~~~~-~------------~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  232 (290)
                      +...+.|...+- .++.-..+.. .            ...+.+|.+.|. ...|+++...+ |...+- .++....+...
T Consensus       195 g~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~  271 (394)
T 3b7f_A          195 GMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDA  271 (394)
T ss_dssp             EEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGG
T ss_pred             EECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCC
Confidence            554454444322 2222121110 0            134889999985 46777776554 544432 23332222210


Q ss_pred             CCcc---cCeEEEEEcC-CCCEEEEE
Q 022910          233 PYHT---EGLTCLTISA-DSTLALSG  254 (290)
Q Consensus       233 ~~~~---~~v~~~~~~~-~~~~l~~~  254 (290)
                       ...   ..+..+.++| +...|+++
T Consensus       272 -l~~~~~~~~~~i~~~p~~~~~l~~~  296 (394)
T 3b7f_A          272 -MPREVGDIGFPIVVHQRDPRTVWVF  296 (394)
T ss_dssp             -SCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred             -CCCCCccceEEEEECCCCCCEEEEE
Confidence             011   3356788876 33444444

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.32  E-value=1.4  Score=37.51  Aligned_cols=107  Identities=9%  Similarity=0.009  Sum_probs=61.2

Q ss_pred             CCEEEEEEcCCCC-EEEEeeCCCeEEEEECCccc---EEEeee---------cCCCCeEEEEEcCC----CCEEEEEeC-
Q 022910          150 GGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAA---YLNMFS---------GHGSSVTCGDFTPD----GKTICTGSD-  211 (290)
Q Consensus       150 ~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~~~~---------~~~~~i~~~~~~~~----~~~l~~~~~-  211 (290)
                      ...+.|+|.|++. .|+++...|.|++++.....   .+..+.         .....+..|+|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3578899999986 46666778999999754321   122111         11356789999995    333333322 


Q ss_pred             -C----------CeEEEEcCCC----------CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 022910          212 -D----------ATLRVWNPKS----------GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD  257 (290)
Q Consensus       212 -d----------g~i~i~d~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  257 (290)
                       +          ..|.-|.+..          .+.+..+... ........|+|.|||.++++.+..
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~-~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL-HRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES-SSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC-CCcccCCcEeECCCCcEEEEeCCC
Confidence             1          1344455432          1222222211 123346889999999877766543

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=92.56  E-value=3.8  Score=33.72  Aligned_cols=159  Identities=9%  Similarity=0.037  Sum_probs=97.9

Q ss_pred             CCEEEEEECCCCCEEEEE-eC--------------CCcEEEEcCCCC--ceEEEEecC------CCCEEEEEEc---CC-
Q 022910          108 DSVSSLAFSMDGQLLASG-GL--------------DGLVQIWDPSSG--NLKCTLEGP------GGGVEWVSWH---PR-  160 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~-~~--------------dg~i~i~d~~~~--~~~~~~~~~------~~~i~~i~~~---~~-  160 (290)
                      -.|..+...+.+++-+.= +.              --.|.+||+.++  +.++++.-.      ...+..+.+.   |. 
T Consensus        87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~  166 (381)
T 3q6k_A           87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG  166 (381)
T ss_dssp             SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred             EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence            367788887776643331 11              236889999999  888877542      3457788887   22 


Q ss_pred             ---CCEEEEee-CCCeEEEEECCcccEEEeeec----C--------------CCCeEEEEEcCC----CCEEEEEeCCC-
Q 022910          161 ---GHIVLAGS-EDSTVWMWNADRAAYLNMFSG----H--------------GSSVTCGDFTPD----GKTICTGSDDA-  213 (290)
Q Consensus       161 ---~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~----~--------------~~~i~~~~~~~~----~~~l~~~~~dg-  213 (290)
                         +.+++.+. ..+-|.++|+.+++.-+....    .              ...+..|+++|+    ++.|+-....+ 
T Consensus       167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~  246 (381)
T 3q6k_A          167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI  246 (381)
T ss_dssp             TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS
T ss_pred             CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC
Confidence               34444444 467899999998865544320    0              246888999997    77777666555 


Q ss_pred             eEEEEc---CCC---CeeeEEEeCCCCcccCeEEEEEc-CCCCEEEEEeCCCcEEEEEcCC
Q 022910          214 TLRVWN---PKS---GENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGSKDGSVHMVNITT  267 (290)
Q Consensus       214 ~i~i~d---~~~---~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~wd~~~  267 (290)
                      .++-..   ++.   ...++.+.. ......-..+++. .+|.++++--....|..|+..+
T Consensus       247 ~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          247 KVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             cEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            333322   121   122232221 1112334456775 5788888878888999999875

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=91.76  E-value=4.8  Score=33.13  Aligned_cols=191  Identities=10%  Similarity=0.073  Sum_probs=114.0

Q ss_pred             CcCEEEEEECCCCCcEEEE--ecC-------------CCcEEEEEccCC--eeeeeecc------ccCCEEEEEEC---C
Q 022910           64 SDEVYSVACSPTDATLVAT--GGG-------------DDKGFFWRINQG--DWASEIQG------HKDSVSSLAFS---M  117 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~--~~~-------------dg~i~iw~~~~~--~~~~~~~~------~~~~i~~~~~~---~  117 (290)
                      --.|..+...+ .+.+.+.  |.-             --.|.+||+.+.  +.++++.-      ....+..+.+.   |
T Consensus        86 lvsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~  164 (381)
T 3q6k_A           86 LTSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP  164 (381)
T ss_dssp             SSCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred             eEEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence            34678888887 4444432  211             136889999999  88877642      23457888887   2


Q ss_pred             C----CCEEEEEe-CCCcEEEEcCCCCceEEEEec----C--------------CCCEEEEEEcCC----CCEEEEeeCC
Q 022910          118 D----GQLLASGG-LDGLVQIWDPSSGNLKCTLEG----P--------------GGGVEWVSWHPR----GHIVLAGSED  170 (290)
Q Consensus       118 ~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~----~--------------~~~i~~i~~~~~----~~~l~~~~~d  170 (290)
                      .    +.+++.+. ..+-|.|+|+.+++..+.+..    .              ...+..|+++|+    ++.|+...-.
T Consensus       165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls  244 (381)
T 3q6k_A          165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS  244 (381)
T ss_dssp             TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS
T ss_pred             CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC
Confidence            2    23444443 467899999998876544310    0              135888899987    6677666654


Q ss_pred             C-eEEEEE---CCccc---EEEeeecC--CCCeEEEEEc-CCCCEEEEEeCCCeEEEEcCCC-C---eeeEEEeCCCCcc
Q 022910          171 S-TVWMWN---ADRAA---YLNMFSGH--GSSVTCGDFT-PDGKTICTGSDDATLRVWNPKS-G---ENIHVIRGHPYHT  236 (290)
Q Consensus       171 g-~i~i~d---~~~~~---~~~~~~~~--~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~~~~~~~  236 (290)
                      + .++-..   |+...   .++.+-..  ...-..+++. .+|.++++--....|..|+..+ .   .....+.... .-
T Consensus       245 s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l  323 (381)
T 3q6k_A          245 AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RF  323 (381)
T ss_dssp             CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TC
T ss_pred             CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-Cc
Confidence            4 344333   22221   12222111  2344566776 5777777778888999999875 1   2233443322 34


Q ss_pred             cCeEEEEEcCCCCEEEEEeC
Q 022910          237 EGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       237 ~~v~~~~~~~~~~~l~~~~~  256 (290)
                      ..+..+.+.++|.+.+..+.
T Consensus       324 ~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          324 VFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             CSEEEEEECTTSCEEEEECS
T ss_pred             cccCeEEECCCCeEEEEECc
Confidence            45778888777776665543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.71  E-value=6.2  Score=36.94  Aligned_cols=38  Identities=11%  Similarity=0.197  Sum_probs=33.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            56777777888899999999999999999999888763

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.00  E-value=6.6  Score=33.30  Aligned_cols=104  Identities=13%  Similarity=0.016  Sum_probs=57.7

Q ss_pred             cCEEEEEECCCCC-cEEEEecCCCcEEEEEccCCe---eeeeec---------cccCCEEEEEECCC---CCEEEEE-eC
Q 022910           65 DEVYSVACSPTDA-TLVATGGGDDKGFFWRINQGD---WASEIQ---------GHKDSVSSLAFSMD---GQLLASG-GL  127 (290)
Q Consensus        65 ~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~---~~~~~~---------~~~~~i~~~~~~~~---~~~l~~~-~~  127 (290)
                      ..-..|+|.|++. .+|++ ...|.|++++.....   .+..+.         ........|+|+|+   ..+|++. +.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            3557999999443 35544 567999999754221   112111         11457889999996   3333333 21


Q ss_pred             --C----------CcEEEEcCCC----------CceEEEEe--cCCCCEEEEEEcCCCCEEEEeeC
Q 022910          128 --D----------GLVQIWDPSS----------GNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSE  169 (290)
Q Consensus       128 --d----------g~i~i~d~~~----------~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~  169 (290)
                        +          ..|.-|.+..          .+.+..+.  ........|+|.|+|.++++.+.
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence              1          1344455432          12233332  11234688999999987776554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.13  E-value=8.8  Score=35.92  Aligned_cols=38  Identities=24%  Similarity=0.229  Sum_probs=32.9

Q ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe
Q 022910          109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE  146 (290)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  146 (290)
                      .+.+++..++..++++.+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            56777788888899999999999999999999887653

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=87.35  E-value=9.7  Score=30.30  Aligned_cols=186  Identities=8%  Similarity=0.022  Sum_probs=106.9

Q ss_pred             CCcEEEEecCCCcEEEEEccCCeee---------eeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC---CCC----
Q 022910           76 DATLVATGGGDDKGFFWRINQGDWA---------SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP---SSG----  139 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~---~~~----  139 (290)
                      ...++++.+.+|.|+--.+..-+..         ..++.. ..+..+........++..+..|.++-+..   ...    
T Consensus         7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~   85 (312)
T 1suu_A            7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS   85 (312)
T ss_dssp             -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred             CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence            4456778889999988876543211         112322 33444444445567777788888766543   222    


Q ss_pred             --ce---EEEEecCCCCEEEEEEcC---CCCEEEEeeCCCeEEEEECCccc-------EEEeeecCCCCeEEEEEcCCCC
Q 022910          140 --NL---KCTLEGPGGGVEWVSWHP---RGHIVLAGSEDSTVWMWNADRAA-------YLNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       140 --~~---~~~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~  204 (290)
                        .+   ...+. ....|.++...+   ...+|+..+..|.++...+....       ....+.. ...+..+.......
T Consensus        86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~  163 (312)
T 1suu_A           86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE  163 (312)
T ss_dssp             --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred             CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence              11   01122 223455554332   45678888999999998875432       2222333 44555555555566


Q ss_pred             EEEEEeCCCeEEEEcCCCC----e---eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          205 TICTGSDDATLRVWNPKSG----E---NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~----~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      .++..+..|.+..+....-    +   -+..+...  ....|..+..-.++..|++.+..|..+...+.
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~--~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~  230 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK--EGDLFVKVLSVKENPYLLIVSENGYGKRLNMS  230 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC--TTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC--CCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence            7888889999888865421    1   11222211  23456666555556678888889988888873

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.54  E-value=9.3  Score=36.57  Aligned_cols=38  Identities=11%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            34455566788899999999999999999999988764

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=86.48  E-value=4.1  Score=35.74  Aligned_cols=60  Identities=20%  Similarity=0.227  Sum_probs=44.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCC------------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE
Q 022910          193 SVTCGDFTPDGKTICTGSDD------------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG  254 (290)
Q Consensus       193 ~i~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  254 (290)
                      ..-.|+|+|.|+++++-..+            ..+.+.+..+++....+...  ....++.++|+||++.|++.
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P--~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--IGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC--TTCEEEEEEECTTSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC--CCccCcCeeECCCCCEEEEE
Confidence            34678999999966654332            24667777778776666654  56789999999999988775

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=86.00  E-value=11  Score=29.45  Aligned_cols=193  Identities=11%  Similarity=0.041  Sum_probs=107.0

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEE---EccCCeeeeeeccccCCEEEEEECC--CCCEEEEEeCCCcEEEEcCCCC
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFW---RINQGDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw---~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      +.+..+.-......++ .-+..|.++--   ++........+. ....|..+.. +  +..+++..+..|.++...+...
T Consensus        24 D~~~~~~~~~t~~~ll-~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~  100 (276)
T 3no0_A           24 APVVNILRVPFTEGLF-LVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF  100 (276)
T ss_dssp             CCEEEEEEEETTSCEE-EEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred             CeEEEEEEECCCCEEE-EEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence            3455444333233333 34456766543   333222111133 3456666644 4  4678999999999999876543


Q ss_pred             c------eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---------EEEeeecCCCCeEEEEEcCCCC
Q 022910          140 N------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---------YLNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       140 ~------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~  204 (290)
                      .      ....++. ...+..+........++..+..|.++.+....-.         ..-.+. ....|..+...+++.
T Consensus       101 ~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~  178 (276)
T 3no0_A          101 EYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEP  178 (276)
T ss_dssp             TTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCS
T ss_pred             hhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCC
Confidence            2      1112222 2345555555566688888899999888754321         111222 234566655555667


Q ss_pred             EEEEEeCCCeEEEEcCCC-------CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE--EEcC
Q 022910          205 TICTGSDDATLRVWNPKS-------GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM--VNIT  266 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~--wd~~  266 (290)
                      .++..+..|.++...+..       ++-+..+.    ....+..+........++..+..|.+..  +++.
T Consensus       179 ~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~----~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          179 YLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG----TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             EEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC----SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred             EEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc----CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence            888889999888876532       22222221    2334444433333446666777888777  7653

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=85.92  E-value=19  Score=32.38  Aligned_cols=199  Identities=8%  Similarity=0.038  Sum_probs=102.1

Q ss_pred             CEEEEE-ECCCCCcEEEEecCCC----cEEEEEccCCeeeee-ec-cccC------CEEEEEECCCCCEEEEE-------
Q 022910           66 EVYSVA-CSPTDATLVATGGGDD----KGFFWRINQGDWASE-IQ-GHKD------SVSSLAFSMDGQLLASG-------  125 (290)
Q Consensus        66 ~v~~~~-~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~-~~-~~~~------~i~~~~~~~~~~~l~~~-------  125 (290)
                      ....+. ++|++...+++-+..|    .++++|+.+++.+.. +. .-+.      ....++|..+...+++.       
T Consensus       130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~  209 (711)
T 4hvt_A          130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI  209 (711)
T ss_dssp             EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred             EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence            345566 7885555555544333    699999999887642 22 0001      11334776333333332       


Q ss_pred             ---eCCCcEEEEcCCCCc--eEEEEecCCCCE-EEEEEcCCCC-----EEEEee---CCCeEEEEECCc--ccEEEeeec
Q 022910          126 ---GLDGLVQIWDPSSGN--LKCTLEGPGGGV-EWVSWHPRGH-----IVLAGS---EDSTVWMWNADR--AAYLNMFSG  189 (290)
Q Consensus       126 ---~~dg~i~i~d~~~~~--~~~~~~~~~~~i-~~i~~~~~~~-----~l~~~~---~dg~i~i~d~~~--~~~~~~~~~  189 (290)
                         +.-..|+.|.+-+..  -...+......+ .....++++.     .+++.+   ....+++.+...  ++. ..+..
T Consensus       210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~  288 (711)
T 4hvt_A          210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINM  288 (711)
T ss_dssp             CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCS
T ss_pred             CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeec
Confidence               112568888876542  233444433332 2344455655     244333   224567777653  332 22222


Q ss_pred             CCCCeEEEEEcCCCCEEEEE----------eCCCeEEEEcCCCCe-------eeEEEeCCCCcccCeEEEEEcCCCCEEE
Q 022910          190 HGSSVTCGDFTPDGKTICTG----------SDDATLRVWNPKSGE-------NIHVIRGHPYHTEGLTCLTISADSTLAL  252 (290)
Q Consensus       190 ~~~~i~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (290)
                      ... .. +..++.+.+++..          ...+.|.+.++.++.       ....+-.+. ....+..+.|..+ .+++
T Consensus       289 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~-~l~~  364 (711)
T 4hvt_A          289 PSD-AT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT-ANEVFNFISTTKD-RVFL  364 (711)
T ss_dssp             CTT-CE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC-TTEEEEEEEECSS-CEEE
T ss_pred             CCc-ce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC-CCCeEEEEEEECC-EEEE
Confidence            221 11 2233455444422          246778888887632       233322222 3456788888865 5667


Q ss_pred             EEeCCC--cEEEEEcCCCc
Q 022910          253 SGSKDG--SVHMVNITTGK  269 (290)
Q Consensus       253 ~~~~dg--~i~~wd~~~~~  269 (290)
                      +...++  .|+++++.+++
T Consensus       365 ~~~~~~~~~l~~~~~~~g~  383 (711)
T 4hvt_A          365 ATYDNVVAKVVTFTLENEQ  383 (711)
T ss_dssp             EEEETTEEEEEEECEETTE
T ss_pred             EEEECCEEEEEEEECCCCc
Confidence            776676  46777776664

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=85.50  E-value=13  Score=29.88  Aligned_cols=184  Identities=11%  Similarity=0.050  Sum_probs=105.2

Q ss_pred             CcEEEEecCCCcEEEEEccCC---------eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE---EcCCCC-----
Q 022910           77 ATLVATGGGDDKGFFWRINQG---------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI---WDPSSG-----  139 (290)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~-----  139 (290)
                      ...+++.+..|.|+--.+.+-         ..-..++ ....+..+........|+.-+..|.++-   |++...     
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~   81 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR   81 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence            346777888898887664321         1111222 2334554444445556666666776654   444432     


Q ss_pred             -ceEE---EEecCCCCEEEEEEcC---CCCEEEEeeCCCeEEEEECCcccE-------EEeeecCCCCeEEEEEcCCCCE
Q 022910          140 -NLKC---TLEGPGGGVEWVSWHP---RGHIVLAGSEDSTVWMWNADRAAY-------LNMFSGHGSSVTCGDFTPDGKT  205 (290)
Q Consensus       140 -~~~~---~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~  205 (290)
                       .++.   .+. ....|.++..-+   +..++++.+..|.++...+.....       ...+.. ...+..+........
T Consensus        82 G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~  159 (327)
T 3uc1_A           82 GQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDD  159 (327)
T ss_dssp             CEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCE
T ss_pred             CEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCE
Confidence             2211   122 233455554433   477999999999999998765322       122332 344555555555567


Q ss_pred             EEEEeCCCeEEEEcCC--CCee-------eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          206 ICTGSDDATLRVWNPK--SGEN-------IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       206 l~~~~~dg~i~i~d~~--~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      |+..+..|.+..+...  .-..       +..+..  .....|.++...+.+.+|+..+..|.++.-.+
T Consensus       160 ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L--~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l  226 (327)
T 3uc1_A          160 LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF--NIDDRLLSLNVVREGTYLLVATSGGYAKRTAI  226 (327)
T ss_dssp             EEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC--CTTCCEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred             EEEEECCCeEEEEECcccccCcCCcCCCCeeeecC--CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEH
Confidence            8888889988877665  2111       111111  13455777766666678889999999888775

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=83.32  E-value=10  Score=33.03  Aligned_cols=61  Identities=18%  Similarity=0.200  Sum_probs=43.7

Q ss_pred             CeEEEEEcCCCCEEEEEeC------------CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe
Q 022910          193 SVTCGDFTPDGKTICTGSD------------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS  255 (290)
Q Consensus       193 ~i~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (290)
                      ....|.|.++|.+.++...            ...|..++..+++....+...  ....++.++|+||++.|+++-
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P--~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--IGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC--TTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC--CCccccCCEECCCCCEEEEEE
Confidence            4577999999987774322            126778888778765555432  346789999999999888763

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=81.42  E-value=32  Score=31.40  Aligned_cols=148  Identities=16%  Similarity=0.231  Sum_probs=75.6

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc------ccCCEEEEEECCCC-CEEEEEeCCCc----EE
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG------HKDSVSSLAFSMDG-QLLASGGLDGL----VQ  132 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------~~~~i~~~~~~~~~-~~l~~~~~dg~----i~  132 (290)
                      .+.|.+|+++|.+...+++++..+.|...+=...........      ....|.+|++.|.. ..++++.....    -.
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence            468999999997677777777667665444222222221111      23479999999853 34444432211    23


Q ss_pred             EE-cCCCCceEEEEecC-------C--CCEEEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeee------cCCCCeE
Q 022910          133 IW-DPSSGNLKCTLEGP-------G--GGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFS------GHGSSVT  195 (290)
Q Consensus       133 i~-d~~~~~~~~~~~~~-------~--~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~i~  195 (290)
                      || ....++.-..+...       .  ..+..++++|. ...++.+...+.|.. ....++.-..+.      .....+.
T Consensus        94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~~  172 (789)
T 1sqj_A           94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGYT  172 (789)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCEE
T ss_pred             EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCeE
Confidence            33 33444433333211       0  12456788874 345555553343321 222222111111      1124578


Q ss_pred             EEEEcC-CCCEEEEEeCC
Q 022910          196 CGDFTP-DGKTICTGSDD  212 (290)
Q Consensus       196 ~~~~~~-~~~~l~~~~~d  212 (290)
                      .|.++| ++..++++..+
T Consensus       173 ~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          173 SVIFDPERNGTIYASATA  190 (789)
T ss_dssp             EEEECTTSTTCEEEEESS
T ss_pred             EEEECCCCCCEEEEEEcC
Confidence            899988 44566666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-27
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-27
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-26
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-26
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-26
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-23
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-22
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-10
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (267), Expect = 1e-27
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 2/143 (1%)

Query: 79  LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI--WDP 136
           L  +G  D     W + +G       GH+  ++++ F  +G   A+G  D   ++     
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

Query: 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC 196
               +  + +    G+  VS+   G ++LAG +D    +W+A +A    + +GH + V+C
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317

Query: 197 GDFTPDGKTICTGSDDATLRVWN 219
              T DG  + TGS D+ L++WN
Sbjct: 318 LGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  106 bits (264), Expect = 2e-27
 Identities = 51/275 (18%), Positives = 99/275 (36%), Gaps = 47/275 (17%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
               GH  ++Y++     D+ L+ +   D K   W     +    I      V + A++ 
Sbjct: 49  RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-------------------------- 151
            G  +A GGLD +  I++  +      +     G                          
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167

Query: 152 -------------------VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS 192
                              V  +S  P   + ++G+ D++  +W+         F+GH S
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227

Query: 193 SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252
            +    F P+G    TGSDDAT R+++ ++ + +           G+T ++ S    L L
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-GITSVSFSKSGRLLL 286

Query: 253 SGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
           +G  D + ++ +         L  H + + C+G +
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  104 bits (259), Expect = 2e-26
 Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 5/179 (2%)

Query: 86  DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145
           D     W I  G   +   GH   V SL+ + D +L  SG  D   ++WD   G  + T 
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

Query: 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTV--WMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
            G    +  + + P G+    GS+D+T   +   AD+             +T   F+  G
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
           + +  G DD    VW+    +   V+ GH      ++CL ++ D     +GS D  + +
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGH---DNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.2 bits (152), Expect = 5e-12
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
           +        + SV+ S     L+  G  D     W   + D A  + GH + VS L  + 
Sbjct: 264 YSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322

Query: 118 DGQLLASGGLDGLVQIWD 135
           DG  +A+G  D  ++IW+
Sbjct: 323 DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
           H   +  +    DS L +S S+DG + + +  T   V ++   +  +    ++ S
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (255), Expect = 4e-26
 Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 23/211 (10%)

Query: 72  CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131
               +   + +   D     W +  G       GH++ V  +  + DG L+AS   D  V
Sbjct: 108 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167

Query: 132 QIWDPSSGNLKCTLEGPGGGVEWVSWH--------------------PRGHIVLAGSEDS 171
           ++W  ++   K  L      VE +SW                       G  +L+GS D 
Sbjct: 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227

Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
           T+ MW+      L    GH + V    F   GK I + +DD TLRVW+ K+   +  +  
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287

Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
              H   +T L     +   ++GS D +V +
Sbjct: 288 ---HEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (255), Expect = 4e-26
 Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 18/250 (7%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
           +  SGH   V  V   P   +++ +   D     W    GD+   ++GH DSV  ++F  
Sbjct: 11  YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
            G+LLAS   D  +++WD        T+ G    V  VS  P G  +++ S D T+ MW 
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129

Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY--- 234
                 +  F+GH   V       DG  I + S+D T+RVW   + E    +R H +   
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 235 --------------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS 280
                            G             LSGS+D ++ M +++TG  + +LV H + 
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 281 IECIGFSRSE 290
           +  + F    
Sbjct: 250 VRGVLFHSGG 259

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.3 bits (243), Expect = 2e-24
 Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 21/181 (11%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
             F+GH + V  V  +  D TL+A+   D     W +   +  +E++ H+  V  ++++ 
Sbjct: 137 KTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195

Query: 118 D--------------------GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW 157
           +                    G  L SG  D  +++WD S+G    TL G    V  V +
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255

Query: 158 HPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217
           H  G  +L+ ++D T+ +W+      +   + H   VT  DF      + TGS D T++V
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

Query: 218 W 218
           W
Sbjct: 316 W 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.8 bits (234), Expect = 4e-23
 Identities = 45/252 (17%), Positives = 94/252 (37%), Gaps = 24/252 (9%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
               GH+D V  ++   +    +A+   D     W     +    + GH  +VSS++   
Sbjct: 53  RTLKGHTDSVQDISFDHSGKL-LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP 111

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
           +G  + S   D  +++W+  +G    T  G    V  V  +  G ++ + S D TV +W 
Sbjct: 112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171

Query: 178 ADRAAYLNMFSGHGSSVTCGDFT--------------------PDGKTICTGSDDATLRV 217
                       H   V C  +                       G  + +GS D T+++
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231

Query: 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277
           W+  +G  +  + GH      +  +   +     LS + D ++ + +    + + +L +H
Sbjct: 232 WDVSTGMCLMTLVGH---DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 288

Query: 278 TDSIECIGFSRS 289
              +  + F ++
Sbjct: 289 EHFVTSLDFHKT 300

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.9 bits (190), Expect = 4e-17
 Identities = 26/132 (19%), Positives = 44/132 (33%)

Query: 45  SDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ 104
                       +   S           S      + +G  D     W ++ G     + 
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244

Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164
           GH + V  + F   G+ + S   D  +++WD  +     TL      V  + +H     V
Sbjct: 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 165 LAGSEDSTVWMW 176
           + GS D TV +W
Sbjct: 305 VTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (158), Expect = 6e-13
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
               GH + V  V         + +   D     W          +  H+  V+SL F  
Sbjct: 241 MTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299

Query: 118 DGQLLASGGLDGLVQIWD 135
               + +G +D  V++W+
Sbjct: 300 TAPYVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.9 bits (229), Expect = 3e-22
 Identities = 65/262 (24%), Positives = 106/262 (40%), Gaps = 17/262 (6%)

Query: 44  GSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI 103
              A N +  + +T         + SV  SP D   +ATG  D     W I        +
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMIL 159

Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
           QGH+  + SL +   G  L SG  D  V+IWD  +G    TL    G          G  
Sbjct: 160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219

Query: 164 VLAGSEDSTVWMWNADRA-------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216
           + AGS D  V +W+++         +     +GH  SV    FT DG+++ +GS D +++
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 217 VWNPKSGENI---------HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267
           +WN ++  N               +  H + +  +  + +    LSGSKD  V   +  +
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339

Query: 268 GKVVSSLVSHTDSIECIGFSRS 289
           G  +  L  H +S+  +  +  
Sbjct: 340 GNPLLMLQGHRNSVISVAVANG 361

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.5 bits (220), Expect = 6e-21
 Identities = 55/189 (29%), Positives = 74/189 (39%), Gaps = 25/189 (13%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-------GHKDSV 110
            +     D V +VA SP D   +A G  D     W    G     +        GHKDSV
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257

Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK------------CTLEGPGGGVEWVSWH 158
            S+ F+ DGQ + SG LD  V++W+  + N K             T  G    V  V+  
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317

Query: 159 PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC------GDFTPDGKTICTGSDD 212
                +L+GS+D  V  W+      L M  GH +SV            P+     TGS D
Sbjct: 318 QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

Query: 213 ATLRVWNPK 221
              R+W  K
Sbjct: 378 CKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.5 bits (202), Expect = 2e-18
 Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 22/213 (10%)

Query: 72  CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131
                   + +G GD     W +  G  +  +       +      DG+ +A+G LD  V
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229

Query: 132 QIWDPSSGNLKCTLE-------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-- 182
           ++WD  +G L   L+       G    V  V +   G  V++GS D +V +WN   A   
Sbjct: 230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289

Query: 183 ----------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
                         + GH   V     T + + I +GS D  +  W+ KSG  + +++GH
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 349

Query: 233 P---YHTEGLTCLTISADSTLALSGSKDGSVHM 262
                        ++  +  +  +GS D    +
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.8 bits (195), Expect = 1e-17
 Identities = 58/249 (23%), Positives = 98/249 (39%), Gaps = 24/249 (9%)

Query: 46  DAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG 105
           +     + D   H    H+  V  V  S  D   +ATG  +     +R++ G   + +  
Sbjct: 44  NPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSD 101

Query: 106 ------------------HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG 147
                                 + S+ FS DG+ LA+G  D L++IWD  +  +   L+G
Sbjct: 102 DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 161

Query: 148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207
               +  + + P G  +++GS D TV +W+          S      T      DGK I 
Sbjct: 162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 221

Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPY----HTEGLTCLTISADSTLALSGSKDGSVHMV 263
            GS D  +RVW+ ++G  +  +         H + +  +  + D    +SGS D SV + 
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

Query: 264 NITTGKVVS 272
           N+      S
Sbjct: 282 NLQNANNKS 290

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.9 bits (190), Expect = 5e-17
 Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 19/142 (13%)

Query: 54  DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-------- 105
           D      +GH D VYSV  +  D   V +G  D     W +   +  S+ +         
Sbjct: 244 DSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302

Query: 106 ----HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV------EWV 155
               HKD V S+A + + + + SG  D  V  WD  SGN    L+G    V         
Sbjct: 303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 362

Query: 156 SWHPRGHIVLAGSEDSTVWMWN 177
           S  P  ++   GS D    +W 
Sbjct: 363 SLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 205 TICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263
                  +    ++NP     I V +     HT  + C+  S D     +G  + +  + 
Sbjct: 30  DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVY 88

Query: 264 NITTGKVVSSLVSHTDS 280
            ++ G +V+ L   + +
Sbjct: 89  RVSDGSLVARLSDDSAA 105

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (178), Expect = 2e-15
 Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 7/194 (3%)

Query: 69  SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128
           +V C   D   V +G  D     W          +QGH  +    +   DG  + SG LD
Sbjct: 139 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQFDGIHVVSGSLD 196

Query: 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS 188
             +++WD  +GN   TL G            + +I+++G+ DSTV +W+      L    
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 254

Query: 189 GHGSSV-TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY--HTEGLTCLTIS 245
           G             +   + T SDD T+++W+ K+GE I  +           +  +  S
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 246 ADSTLALSGSKDGS 259
               +   GS++G+
Sbjct: 315 NTKLVCAVGSRNGT 328

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 6e-15
 Identities = 47/234 (20%), Positives = 90/234 (38%), Gaps = 46/234 (19%)

Query: 92  WRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
           WR  +      ++GH D V +      G  + SG  D  +++W   +G    TL G  GG
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 152 VEWVSWHP--------------------------------------RGHIVLAGSEDSTV 173
           V                                                 V++GS D+T+
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233
            +W+ +    L++  GH ++V C  +    + + +G+ D  ++VW+P++   +H ++GH 
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQGHT 177

Query: 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
                    ++  D    +SGS D S+ + ++ TG  + +L  H      +   
Sbjct: 178 NR-----VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 9e-15
 Identities = 51/243 (20%), Positives = 103/243 (42%), Gaps = 13/243 (5%)

Query: 52  QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS 111
              ++            +V C       V +G  D     W I  G     + GH  +V 
Sbjct: 82  WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141

Query: 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171
                 DG+ + SG  D +V++WDP +     TL+G        S    G  V++GS D+
Sbjct: 142 C--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDT 197

Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
           ++ +W+ +    ++  +GH S  +          + +G+ D+T+++W+ K+G+ +  ++G
Sbjct: 198 SIRVWDVETGNCIHTLTGHQSLTSG--MELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 255

Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS-----HTDSIECIGF 286
              H        +  +    ++ S DG+V + ++ TG+ + +LV+         +  I  
Sbjct: 256 PNKHQS--AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313

Query: 287 SRS 289
           S +
Sbjct: 314 SNT 316

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 2e-13
 Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 15/172 (8%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
           H   GH++ VY       D   V +G  D     W +  G+    + GH+   S +    
Sbjct: 171 HTLQGHTNRVY---SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK- 226

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMW 176
              +L SG  D  V+IWD  +G    TL+GP      V+      + V+  S+D TV +W
Sbjct: 227 -DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285

Query: 177 NADRAAYLNMF-----SGHGSSVTCGDFTPDGKTICTGSDDAT----LRVWN 219
           +     ++         G G  V     +        GS + T    L V +
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277
           W     ++  V++GH      +TCL         +SGS D ++ + +  TGK + +LV H
Sbjct: 1   WRRGELKSPKVLKGH--DDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 56

Query: 278 TDSIECIGFSRS 289
           T  +       +
Sbjct: 57  TGGVWSSQMRDN 68

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.3 bits (170), Expect = 2e-14
 Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 2/135 (1%)

Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           ++GH  SV +     +   + +G  D +++++D  +      L G  GGV  + +   G 
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66

Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT-GSDDATLRVWNPK 221
           +V   ++ +                  + +                 GS D TL VW   
Sbjct: 67  LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126

Query: 222 SGENIHVIRGHPYHT 236
              ++        + 
Sbjct: 127 KESSVPDHGEEHDYP 141

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 2e-09
 Identities = 23/179 (12%), Positives = 45/179 (25%), Gaps = 3/179 (1%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
               GH   V +  C   +   V TG  D     +      +  ++ GH   V +L ++ 
Sbjct: 6   TTLRGHMTSVIT--CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMW 176
            G L++      +                             +    +  GS D+T+ +W
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
              + + +                 +              V       NI V   +   
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 5e-09
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 7/210 (3%)

Query: 53  PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS 112
           P+++ +        + SV        +V +G  D+    W + Q      + GH D + S
Sbjct: 147 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS 206

Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172
             +  + +   S  +D  ++IWD  +G L  TL+G       V         L  +    
Sbjct: 207 TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH---TALVGLLRLSDKFLVSAAADG 263

Query: 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
                            H +      F      + +GS++    ++N +SG+ +H     
Sbjct: 264 SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANILK 322

Query: 233 PYHTEGLTCLTISADSTLALSGSKDGSVHM 262
               + +  +      TL  +  KDG   +
Sbjct: 323 --DADQIWSVNFKGK-TLVAAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 1e-08
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 84  GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-LK 142
              D                  H +  +   F +   +L SG  +    I++  SG  + 
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 317

Query: 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
             +      +  V++  +  +V A  +D   ++   D
Sbjct: 318 ANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 41/287 (14%), Positives = 93/287 (32%), Gaps = 57/287 (19%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
              SGH   V+++  +     +  +     + +  +        E          +    
Sbjct: 47  LQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 106

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS--------------------- 156
           + + + +G  D  + +W     +                                     
Sbjct: 107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 166

Query: 157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216
               G+IV++GS D+T+ +W+  +   L + SGH   +    +  + K   + S D T+R
Sbjct: 167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 226

Query: 217 VWNPKSGENIHVIR-----------------------------------GHPYHTEGLTC 241
           +W+ ++GE ++ ++                                      YH   L+ 
Sbjct: 227 IWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA 286

Query: 242 LTISADSTLALSGSKDGSVHMVNITTGKVV-SSLVSHTDSIECIGFS 287
           +T    S   L    +   ++ N+ +GK+V ++++   D I  + F 
Sbjct: 287 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK 333

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 7e-05
 Identities = 4/70 (5%), Positives = 17/70 (24%), Gaps = 2/70 (2%)

Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-NMFSGHGSSVTCGDFTPDGKTICT 208
             +  ++       +L    ++   ++N      +          +   +F      +  
Sbjct: 282 TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAA 340

Query: 209 GSDDATLRVW 218
              D    + 
Sbjct: 341 VEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286
             +RGH   T  +TCL    +    ++G+ D  + + +    K +  L  H   +  + +
Sbjct: 6   TTLRGH--MTSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY 61

Query: 287 SRS 289
           +  
Sbjct: 62  AHG 64

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.9 bits (169), Expect = 3e-14
 Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 5/172 (2%)

Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--TLEGPGGGVEWVSWHPRG 161
               + +S  A++ D   +A    +  V I++ S         L+   G V  V W P  
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 162 HIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
           + ++    D   ++W      +    +      +  C  + P+ K    GS    + +  
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 220 PKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
            +   +              +  L    +S L  +GS D    + +    +V
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV 175

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.5 bits (168), Expect = 4e-14
 Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 9/183 (4%)

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMD 118
           S   + +   A +  D T +A    + +   +  +   W    E++ H   V+ + ++ D
Sbjct: 4   SFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 119 GQLLASGGLDGLVQIWDPSSGNLK--CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
              + + G D    +W       K    +         V W P       GS    + + 
Sbjct: 63  SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122

Query: 177 N----ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
                 D     ++     S+V   D+ P+   +  GS D   R+++    E        
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182

Query: 233 PYH 235
           P+ 
Sbjct: 183 PWG 185

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 7/172 (4%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
              S     V+ V  S    + VA    D        ++    + +      + ++ F  
Sbjct: 195 FESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 253

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
           +  L+A+G  D    ++   S   K +  G     +  S           + D       
Sbjct: 254 ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 312

Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKT----ICTGSDDATLRVWNPKSGEN 225
           +  AA   + S H +SV+       GK      CT   D  + +W+ +S E+
Sbjct: 313 SA-AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.1 bits (128), Expect = 6e-09
 Identities = 41/297 (13%), Positives = 77/297 (25%), Gaps = 72/297 (24%)

Query: 57  THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---------------------- 94
            H    H+ +V  V  +P D+  + T G D   + W +                      
Sbjct: 44  VHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 102

Query: 95  --------------------------NQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128
                                     +        +  + +V SL +  +  LLA+G  D
Sbjct: 103 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162

Query: 129 GLVQIWDPSSGNLKC------------------TLEGPGGGVEWVSWHPRGHIVLAGSED 170
              +I+      ++                         G V  V +   G  V   S D
Sbjct: 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 222

Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
           STV + +AD+   +   +     +    F  +   +  G D     ++   S        
Sbjct: 223 STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDC-FPVLFTYDSAAGKLSFG 281

Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
           G     +  +   ++A         K         +          H +S+  I   
Sbjct: 282 GRLDVPKQSSQRGLTARERFQNLDKKAS----SEGSAAAGAGLDSLHKNSVSQISVL 334

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.0 bits (120), Expect = 6e-08
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 9/184 (4%)

Query: 90  FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG 149
           +  ++  G+   E       V  + FS +G  +A    D  V + D        TL    
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243

Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209
             +  V++     +V AG +   V  +  D AA    F G                    
Sbjct: 244 LPLLAVTFITESSLVAAGHDCFPVL-FTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 302

Query: 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL----SGSKDGSVHMVNI 265
           + D          G           H   ++ +++ +          +   DG + + ++
Sbjct: 303 NLDKKASSE----GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

Query: 266 TTGK 269
            + +
Sbjct: 359 RSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK--VVSSLVSHTDSIECIGFS 287
           H +  E ++C   + D T       +  VH+   +  K   V  L  H   +  + ++
Sbjct: 3   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 66.8 bits (161), Expect = 3e-13
 Identities = 17/165 (10%), Positives = 38/165 (23%), Gaps = 18/165 (10%)

Query: 79  LVATGGGDDKGFFWRINQGDWASE-------IQGHKDSVSSLAFSMDGQLLASGGLDG-- 129
            +                 +++ E       I     S +            +G  D   
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251

Query: 130 -----LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL 184
                     DP    +   LE                      E   +  ++       
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV- 310

Query: 185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229
              +   +++T    + D KT+    DD  +  +  +  E+   +
Sbjct: 311 ---TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 65.3 bits (157), Expect = 1e-12
 Identities = 24/202 (11%), Positives = 45/202 (22%), Gaps = 21/202 (10%)

Query: 87  DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--- 143
            +       +G              + AF  D + L       L    D    N      
Sbjct: 158 MQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

Query: 144 ----TLEGPGGGVEWVSWHPRGHIVLAGSEDST-------VWMWNADRAAYLNMFSGHGS 192
                +    G        PR     AG  D             +      +        
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277

Query: 193 SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252
             +               +   L  ++ K+ +              LT L +SAD    +
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-------VKNNLTDLRLSADRKTVM 330

Query: 253 SGSKDGSVHMVNITTGKVVSSL 274
               DG ++   +   +   ++
Sbjct: 331 VRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.2 bits (123), Expect = 2e-08
 Identities = 16/224 (7%), Positives = 49/224 (21%), Gaps = 11/224 (4%)

Query: 54  DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
             +  +       +  V            G  +         +   A + + +  +V ++
Sbjct: 32  SGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAM 91

Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG------ 167
               +G+          +   D  +G            +   +       +  G      
Sbjct: 92  GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG 151

Query: 168 ----SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223
                    + +++ +            S      F  D K +   S  +     +    
Sbjct: 152 ETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210

Query: 224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267
                +   P+    +               S+ G   + ++  
Sbjct: 211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK 254

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 53  PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS 112
                 +       +   +            G  +KG   + +      ++   K++++ 
Sbjct: 262 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT--RKVTEVKNNLTD 319

Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE 146
           L  S D + +     DG +  +       + T+E
Sbjct: 320 LRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 7/136 (5%)

Query: 109 SVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
           S  +  FS  DG L+A     G   I D S   +          + +V       +    
Sbjct: 4   SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIH 60

Query: 168 SEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225
                  + +++         F  +  +V       +GK     +D   +   + ++G+ 
Sbjct: 61  GTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119

Query: 226 IHVIRGHPYHTEGLTC 241
             + R         T 
Sbjct: 120 TVIERSREAMITDFTI 135

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 2e-12
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 2/135 (1%)

Query: 85  GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144
           G D        +     +       + SL +   G+ LA G            +   K  
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS-NVEVLHVNKPDKYQ 260

Query: 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204
           L      V  + +   G   ++  +D+ +  W     A +       SSV   D + D K
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK 319

Query: 205 TICTGSDDATLRVWN 219
            I TGS D    V+ 
Sbjct: 320 YIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 4e-12
 Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 90  FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG 149
             W ++      + QGH D  S +  S DG  L +GGLD  V+ WD   G          
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFT 224

Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209
             +  + + P G  +  G E S V + + ++         H S V    F   GK   + 
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVST 283

Query: 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
             D  L  W    G +I   +     +  +    IS D    ++GS D    +  +
Sbjct: 284 GKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 9e-12
 Identities = 48/284 (16%), Positives = 82/284 (28%), Gaps = 48/284 (16%)

Query: 49  NTEQPDDSTHIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--- 104
               P  +  I +  H + V +V  S      V TGG       W I+     S +    
Sbjct: 35  GPGIPRHARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD 92

Query: 105 --GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPR 160
                + + S     DG  L  GG    + IWD ++   +              ++  P 
Sbjct: 93  CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152

Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220
             +  +   D  + +W+      +  F GH    +C D + DG  + TG  D T+R W+ 
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212

Query: 221 KSGE-------------------------------------NIHVIRGHPYHTEGLTCLT 243
           + G                                      N         H   +  L 
Sbjct: 213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK 272

Query: 244 ISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
            +      +S  KD  ++      G  +      + S+     S
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDIS 315

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 7e-10
 Identities = 36/205 (17%), Positives = 64/205 (31%), Gaps = 8/205 (3%)

Query: 63  HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL 122
            S   YS   +  D  +       D      I +         H + V ++  S   + +
Sbjct: 8   GSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHV 66

Query: 123 ASGGLDGLVQIWDPSSGNLKCTLE-----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
            +GG  G V++WD S    K  +           +      P G  ++ G E ST+ +W+
Sbjct: 67  YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125

Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
                         S+  C        +    S  +   +          V +   +   
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185

Query: 238 GLTCLTISADSTLALSGSKDGSVHM 262
             +C+ IS D T   +G  D +V  
Sbjct: 186 A-SCIDISNDGTKLWTGGLDNTVRS 209

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 1e-11
 Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 7/188 (3%)

Query: 101 SEIQGHKDSVSS-LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP 159
             I    ++         D Q + SG  D  ++IWD ++   K  L G  G V  + +  
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
           R    +  +  S   +   D      + +             +   + T S D ++ VW+
Sbjct: 66  R----VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD 279
             S  +I + R    H        +  D    +S S D ++ + N +T + V +L  H  
Sbjct: 122 MASPTDITLRRVLVGHRA--AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179

Query: 280 SIECIGFS 287
            I C+ + 
Sbjct: 180 GIACLQYR 187

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 4e-11
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 15/145 (10%)

Query: 84  GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143
            GD     W  +  ++   + GHK  ++        +L+ SG  D  +++WD   G   C
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECG--AC 210

Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY---------LNMFSGHGSSV 194
                G              +++G+ D  + +W+   A           L     H   V
Sbjct: 211 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 270

Query: 195 TCGDFTPDGKTICTGSDDATLRVWN 219
               F  D   I + S D T+ +W+
Sbjct: 271 FRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 3e-10
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 14/178 (7%)

Query: 91  FWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG 150
                       + GH+ +V+ + F     + ASG  D  +++W+ S+     TL G   
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKR 179

Query: 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210
           G+       R  +V++GS D+T+ +W+ +  A L +  GH   V C  F      I +G+
Sbjct: 180 GIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGA 235

Query: 211 DDATLRVWNPKSGENIHVIRGHPY------HTEGLTCLTISADSTLALSGSKDGSVHM 262
            D  ++VW+  +  +     G         H+  +  L    D    +S S D ++ +
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 5e-10
 Identities = 46/278 (16%), Positives = 91/278 (32%), Gaps = 58/278 (20%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
           H  S  S  VY +     D   + +G  D+    W  N  +    + GH  SV  L +  
Sbjct: 9   HCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 118 DGQLLASGGLD--------------------------------------GLVQIWDPS-S 138
              +  S                                            + +WD +  
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198
            ++       G              +++ S D T+ +WN     ++   +GH   + C  
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 185

Query: 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258
           +    + + +GS D T+R+W+ + G  + V+ GH      +       D+   +SG+ DG
Sbjct: 186 Y--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-----DNKRIVSGAYDG 238

Query: 259 SVHMVNITTG---------KVVSSLVSHTDSIECIGFS 287
            + + ++              + +LV H+  +  + F 
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD 276

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 11/90 (12%)

Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---------IQG 105
           +              V C   D   + +G  D K   W +                 +  
Sbjct: 206 ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265

Query: 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
           H   V  L F  D   + S   D  + IWD
Sbjct: 266 HSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 61.3 bits (147), Expect = 2e-11
 Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 2/181 (1%)

Query: 53  PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVS 111
            DD +   +G       V        L              +         +       +
Sbjct: 153 ADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT 212

Query: 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171
              F  D Q  A+  L       D  +G            + +                +
Sbjct: 213 IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN 272

Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
            +  ++  +   +   +    +  C  F   G  +  G     L V+NP + E +  I+ 
Sbjct: 273 RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

Query: 232 H 232
            
Sbjct: 332 P 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 59.0 bits (141), Expect = 1e-10
 Identities = 22/183 (12%), Positives = 50/183 (27%), Gaps = 16/183 (8%)

Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRG-HIVLAGSED 170
            A     + +        + + D +S  +  +   P   G       P      +  +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 171 STVWMWNADR------AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224
             ++  + D       A   ++    G S+     +PDGK +    +       +     
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 225 N-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV-------HMVNITTGKVVSSLVS 276
             + V                       +  + DGS+       + +++ TGK   +L  
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 277 HTD 279
              
Sbjct: 182 RNW 184

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 53.6 bits (127), Expect = 7e-09
 Identities = 25/256 (9%), Positives = 53/256 (20%), Gaps = 41/256 (16%)

Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---------- 104
           + + +       +YS A SP    + AT     +     + +                  
Sbjct: 79  NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 138

Query: 105 ---GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG---------- 151
                   V  +  + DG L  +G     + +                 G          
Sbjct: 139 RTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 198

Query: 152 ------------VEWVSWHPRGHIVLAGSEDSTVWMWN-ADRAAYLNMFSGHGSSVTCGD 198
                            +                   +      +   F+        G 
Sbjct: 199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 258

Query: 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258
            +P       G  +  L  ++ K  + I              C+           G    
Sbjct: 259 RSPKDPNQIYGVLN-RLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFN 313

Query: 259 SVHMVNITTGKVVSSL 274
            + + N  T + V ++
Sbjct: 314 DLAVFNPDTLEKVKNI 329

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 49  NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
           + +     T  F+  ++  ++   SP D   +           + + Q            
Sbjct: 236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA--KYDLKQRKLIKAA-NLDH 292

Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS 156
           +   +AF   G  L  GG    + +++P +      ++ PGG +   +
Sbjct: 293 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTT 340

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 16/178 (8%), Positives = 38/178 (21%), Gaps = 19/178 (10%)

Query: 76  DATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQ-LLASGGLDGLVQI 133
               +      +      +             K    +   + D +         G +  
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 134 WDPSSGNLKCTL------EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AY 183
            D  +                G  +   +  P G  V A    +     +          
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126

Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATL-------RVWNPKSGENIHVIRGHPY 234
            +   G  +        P    +   +DD +L          + K+G+    +    +
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 60.6 bits (145), Expect = 3e-11
 Identities = 17/177 (9%), Positives = 44/177 (24%), Gaps = 2/177 (1%)

Query: 54  DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
            D + ++    D       + T          + + +        W         +    
Sbjct: 144 RDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFY 203

Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173
               D            +   D  +G +            + S         A    + +
Sbjct: 204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAKTRAFGAYNVL 262

Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
             ++ ++ A +        S    + + DG T+  G     L  ++ ++ E    + 
Sbjct: 263 ESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 25/274 (9%), Positives = 56/274 (20%), Gaps = 38/274 (13%)

Query: 47  AENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--- 103
                               ++  A SP   TL                Q    +     
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 104 -------QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW-- 154
                        ++ LA++ DG  L   G D  V   +  +      ++          
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183

Query: 155 --VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM------------------FSGHGSSV 194
             ++   +       +        + D A                               
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY 243

Query: 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
                 P             L  ++ +   +I  +            + +S D +    G
Sbjct: 244 FSTAVNPAKTRAFG--AYNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLG 297

Query: 255 SKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288
              G +   +  T +    +    ++   +   R
Sbjct: 298 GALGDLAAYDAETLEKKGQVDLPGNASMSLASVR 331

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 16/161 (9%)

Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGP--GGGVEWVSWHPRG-HIVLAGSEDSTVWMW 176
             + +      + + D     +   +     G         P G       ++  ++   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 177 NADRAAYLNMFSGH-----GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV--- 228
           +      L             S+     +PDGKT+        L + + +          
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 229 -----IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264
                 R        +T L  + D +      +D  V    
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNIT 266
             +    L V + +      VI              ++        + +K  S+  +++ 
Sbjct: 6   APARPDKLVVIDTEKMAVDKVITIAD-AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64

Query: 267 TGKVVSSLVSHTD 279
           TG+ +  +   T 
Sbjct: 65  TGETLGRIDLSTP 77

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 19/220 (8%), Positives = 49/220 (22%), Gaps = 22/220 (10%)

Query: 79  LVATGGGDDKGFFWRINQGDWASEIQGHKD--SVSSLAFSMDGQ-LLASGGLDGLVQIWD 135
            +      DK       +      I       +      +  G+   A+      +   D
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 136 PSSGNLKCTLEGPGGG-----------------VEWVSWHPRGHIVLAGSEDSTVWMWNA 178
             +G     ++                      +       R  +     + + V +++A
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238
           +  +    F      +T   +  DG  +     D  +      +      I+     T  
Sbjct: 123 ETLSRRKAFEAPR-QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 239 -LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277
               L +      +   +        +I      +     
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 22/220 (10%), Positives = 64/220 (29%), Gaps = 29/220 (13%)

Query: 56  STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ------GHKDS 109
           + +    H  +++SV+   +      +  GD     W     D  +          HK  
Sbjct: 6   TANAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 110 VSSLAF-------SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           +  +         + +  L+A+    G +  +  +  +    +      +          
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122

Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
             L     +   + +        + +    +     F P      + + + +  +    +
Sbjct: 123 WALKWGASNDRLLSH------RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176

Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
                 +      ++  T + IS    +A +G  +G+V +
Sbjct: 177 ------VESPMTPSQFATSVDISERGLIA-TGFNNGTVQI 209

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 2e-10
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 27/212 (12%)

Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD------PSSGNLKCTLEGPGGGVEW 154
                     +S+  S  G L+A+G  +G VQI +        +   + ++      +  
Sbjct: 178 ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236

Query: 155 VSWHPRGHIVLAGSEDSTVWMW----------------NADRAAYLNMFSGHGSSVTCGD 198
           V + P+G ++    + ++                        +        H S V    
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296

Query: 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLTISADSTLALSGSKD 257
           F   G+T+C+   D  LR W+ K+ E I  +  H          L +             
Sbjct: 297 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP--- 353

Query: 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
           G   +  +  G          +S+ C+   RS
Sbjct: 354 GVFDVKFLKKGWRSGMGADLNESLCCVCLDRS 385

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 12/107 (11%)

Query: 185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN---------IHVIRGHPYH 235
           N    H + +             + S D  L+VW+ K  +N           V +   +H
Sbjct: 8   NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 236 TEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI 281
            + L  +   A +  L  + S  G +    IT       ++     +
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL 112

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 19/131 (14%)

Query: 92  WRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
              +    +     H   V SL+F+  G+ L S G DG ++ WD  +     TL      
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333

Query: 152 VEW----VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207
           +E     ++    G  +         ++    R+               G      +++C
Sbjct: 334 IEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS---------------GMGADLNESLC 378

Query: 208 TGSDDATLRVW 218
               D ++R +
Sbjct: 379 CVCLDRSIRWF 389

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 3/90 (3%)

Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE---GPGGGVEWVSWHPR 160
           Q  KD +S +       LL     DG + ++          L         +   ++   
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGH 190
             + +         +      +       +
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTN 97

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 7e-09
 Identities = 8/81 (9%), Positives = 21/81 (25%)

Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243
           + +       ++     P    +   S D +L V+          +     +   L C  
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 244 ISADSTLALSGSKDGSVHMVN 264
              ++ L +         +  
Sbjct: 64  FIDNTDLQIYVGTVQGEILKV 84

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 28/301 (9%), Positives = 64/301 (21%), Gaps = 71/301 (23%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLA 114
            I     D +  +   P   +L+     D     ++ +      ++     +K  +    
Sbjct: 5   QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 115 FSMDGQLLASGG--------------------------------------------LDGL 130
           F  +  L    G                                             DGL
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS------EDSTVWMWN----ADR 180
           +++ DP +                   +    +    S       +S V  +      D 
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI------------HV 228
              +                 + +     S D  + V       +              +
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288
                     +  +  S       +   DG +   N+ T K + +     +    +  + 
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC 302

Query: 289 S 289
           S
Sbjct: 303 S 303

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 23/184 (12%), Positives = 46/184 (25%), Gaps = 27/184 (14%)

Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG----VEWVSWHPRGHIVLAGSEDST 172
            +   L  G  +  VQ +               G      +              S D  
Sbjct: 158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217

Query: 173 VWMWNADRAA---------------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217
           V +   D                       +     V   +F+P  K + T   D  +  
Sbjct: 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277

Query: 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277
           WN ++ + I             + + I+    +    + D +      T   +  ++  +
Sbjct: 278 WNLQTRKKIKNFAKFN----EDSVVKIACSDNILCLATSDDTF----KTNAAIDQTIELN 329

Query: 278 TDSI 281
             SI
Sbjct: 330 ASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 5/103 (4%)

Query: 92  WRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
           +         +       V+S+ FS   + L + G DG++  W+  +             
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK-FNE 294

Query: 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV 194
              V      +I+   + D T         A       + SS+
Sbjct: 295 DSVVKIACSDNILCLATSDDTFKTNA----AIDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV---SHTDSIECIGFSRSE 290
             + ++ + I    +L L  S DGS+ +           L+    +   + C  F  + 
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 3e-10
 Identities = 44/257 (17%), Positives = 82/257 (31%), Gaps = 17/257 (6%)

Query: 48  ENTEQPDDSTHIFSGH-SDEVYSVACSPT-DATLVATGGGD--------DKGFFWRINQG 97
           ++ +        F+GH S  V +V  SP   +  + +G                    + 
Sbjct: 46  DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV 105

Query: 98  DWASEIQGHKDSVSSLAFSMDGQLLASGGL--DGLVQIWDPSSGNLKCTLEGPGGGVEWV 155
           +  SE Q     +S +++  +G+ L   G   D         SGN    + G    +   
Sbjct: 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165

Query: 156 SWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS----GHGSSVTCGDFTPD-GKTICTGS 210
                  +      D    ++        +         GS V   +F+PD G+ + T  
Sbjct: 166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225

Query: 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
            D  +  ++ KSGE +  I       +G        DS    +   D ++ + ++TT K 
Sbjct: 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285

Query: 271 VSSLVSHTDSIECIGFS 287
           V         +      
Sbjct: 286 VQKWTLDKQQLGNQQVG 302

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 8e-06
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 150 GGVEWVSWHPRGHIVLAGSEDSTV---WMWNADRAAYLNMFSGHGSS-VTCGDFTP--DG 203
                +S+ P  + +      S           +   +  F+GHGSS VT   F+P    
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
           + +C+G +   + VW     +  + +  +      +    IS 
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 20/153 (13%), Positives = 47/153 (30%), Gaps = 16/153 (10%)

Query: 99  WASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS- 156
              +    ++  + L++      +A   G    V+  D     +   ++  G G   V+ 
Sbjct: 9   IPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTT 68

Query: 157 --WHPR--GHIVLAGSEDSTVWMWNAD--------RAAYLNMFSGHGSSVTCGDFTPDGK 204
             + P      + +G E   V +W                + F      ++   +  +G+
Sbjct: 69  VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR 128

Query: 205 T--ICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
              +     D      +  SG ++  + GH   
Sbjct: 129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQR 161

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 11/111 (9%)

Query: 188 SGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS- 245
           S   +  T   + P    I       A +R  +    +   V++   + +  +T +  S 
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 246 -ADSTLALSGSKDGSVHMVNITTGKVVSSLV--------SHTDSIECIGFS 287
              S    SG + G V +   T  K  +S+              I  I + 
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 124

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.3 bits (136), Expect = 4e-10
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRG 161
             GH  ++++L+ S DG+ L S   +G +  WD S+G       +     +  +    +G
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 162 HIVLAGSEDSTVWMW 176
            +     +D    + 
Sbjct: 68  DLFTVSWDDHLKVVP 82

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.7 bits (124), Expect = 1e-08
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL 242
             GH  ++T    + DGKT+ +   +  +  W+  +G +  V      H   +T +
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV--HATMITGI 61

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.7 bits (111), Expect = 6e-07
 Identities = 30/268 (11%), Positives = 77/268 (28%), Gaps = 42/268 (15%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFS 116
            +  GH+  + +++ S  D   + +   +     W I+ G         H   ++ +  +
Sbjct: 6   QVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS-------------------- 156
             G L      D L  +    SG             + +                     
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124

Query: 157 --------------------WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC 196
                                + +  + + G +        +  +        H + +T 
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184

Query: 197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256
             F+ +G  +        +  ++  +   +       +HT  + C++ S D+    +GS 
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244

Query: 257 DGSVHMVNITTGKVVSSLVSHTDSIECI 284
           D SV + N+        ++    ++  +
Sbjct: 245 DNSVIVWNMNKPSDHPIIIKGAHAMSSV 272

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.5 bits (108), Expect = 1e-06
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSD 211
            VSW P    +  GS D++V +WN ++ +   + +   H  S        +  TI +   
Sbjct: 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288

Query: 212 DATLRVWN 219
           D+ ++ WN
Sbjct: 289 DSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 5e-06
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 1/104 (0%)

Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCG 197
           G++     G    +  +S    G  + +   +  +  W+        +F   H + +T  
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC 241
             T  G       DD    V    SG +      +   ++ L  
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 105

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 7e-06
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 1/113 (0%)

Query: 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213
           + +            +     + N    A+ N ++ H + V C  ++PD   + TGS D 
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246

Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266
           ++ VWN     +  +I    +    +  + I  + T  +S  +D ++   N+ 
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 8e-05
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS--WHPRGHIVLAGSEDSTVWMWN 177
           A+G LD  V +W+ +  +    +      +  V+         +++  +DS +  WN
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 81  ATGGGDDKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
           ATG  D+    W +N+      I    H  S  +    ++   + S G D  ++ W+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 1e-04
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS-HTDSI 281
           G    V  GH    + +T L+ SAD     S   +G ++  +I+TG         H   I
Sbjct: 2   GSIDQVRYGH---NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 58

Query: 282 ECIGF 286
             I  
Sbjct: 59  TGIKT 63

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.9 bits (136), Expect = 6e-10
 Identities = 22/251 (8%), Positives = 49/251 (19%), Gaps = 36/251 (14%)

Query: 52  QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS 111
             +            V+ +    + A L+    G        +         +       
Sbjct: 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI 170

Query: 112 S-------LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164
                      S    L AS             +              +    +  G +V
Sbjct: 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ----CTGAQNCSSQAAQANYPGMLV 226

Query: 165 LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA----------- 213
            A +         A  A       G+ S     +F   G  +     +            
Sbjct: 227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286

Query: 214 --------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL--SGSKDGSVHMV 263
                            G+    I            +  + D       + +    + + 
Sbjct: 287 RSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLDIY 342

Query: 264 NITTGKVVSSL 274
           +  + +  SS+
Sbjct: 343 DAASDQDQSSV 353

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.4 bits (114), Expect = 4e-07
 Identities = 16/188 (8%), Positives = 34/188 (18%), Gaps = 26/188 (13%)

Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIW--DPSSGNLKCTLEGPGGGVEWVSWHPRG 161
            G        A S    +       G  + W      G       G    +        G
Sbjct: 19  DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSL--AVAGHSG 76

Query: 162 HIVLA----------GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD-------FTPDGK 204
                          G     V +++      +       +                   
Sbjct: 77  SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136

Query: 205 TI-CTGSDDATLRVWNPKSGENIHVIRG----HPYHTEGLTCLTISADSTLALSGSKDGS 259
            +       +     +     +  + +     H +     T    S  ++LA S      
Sbjct: 137 CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP 196

Query: 260 VHMVNITT 267
                +  
Sbjct: 197 AAAGIVGA 204

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 22/205 (10%), Positives = 47/205 (22%), Gaps = 14/205 (6%)

Query: 96  QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWV 155
            G + S              S      A G     V+++DP +      +E P      V
Sbjct: 63  LGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122

Query: 156 SWHPRG--------HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207
                          ++      S     +   A+   +                  T  
Sbjct: 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHY 179

Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSKDGSVHMVN 264
            GS  A+L   +  +      I G                +    L  + +       + 
Sbjct: 180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP 239

Query: 265 ITTGKVVSSLVSHTDSIECIGFSRS 289
                + +++  +    +   F  +
Sbjct: 240 AAGATMKAAIDGNESGRKADNFRSA 264

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 16/153 (10%), Positives = 44/153 (28%), Gaps = 3/153 (1%)

Query: 53  PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS 112
                 ++  ++ +++ +  S  DA  +       +       +     ++  H+     
Sbjct: 204 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI 263

Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL--AGSED 170
                             V + D  +G      E  G  ++ ++       +L    + D
Sbjct: 264 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD 322

Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
            T+++ +A+    L   +  G           G
Sbjct: 323 KTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 28/257 (10%), Positives = 59/257 (22%), Gaps = 35/257 (13%)

Query: 35  PDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI 94
           P                  D         +            +      G +        
Sbjct: 127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT-- 184

Query: 95  NQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--TLEGPGGGV 152
                       +  ++  A+S     L      G +   D SSG+ K    +E      
Sbjct: 185 ---HTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 241

Query: 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212
               W P G   +A                                           +  
Sbjct: 242 RADGWRPGGWQQVAYHRALDRIYL----------------------LVDQRDEWRHKTAS 279

Query: 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL--SGSKDGSVHMVNITTGKV 270
             + V + K+GE +            +  + +S D    L    + D ++++ +  +G+ 
Sbjct: 280 RFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 335

Query: 271 VSSLVSHTDSIECIGFS 287
           + S+       + I  +
Sbjct: 336 LRSVNQLGHGPQVITTA 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.2 bits (118), Expect = 9e-08
 Identities = 20/153 (13%), Positives = 42/153 (27%), Gaps = 4/153 (2%)

Query: 11  DDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSV 70
              R V+   +  IH++ +   D   +   +                   + H       
Sbjct: 205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY 264

Query: 71  ACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGLD 128
                                     G+  ++ +   + + S+  S D +  L A    D
Sbjct: 265 LLVD-QRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLYALSTGD 322

Query: 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG 161
             + I D  SG    ++   G G + ++    G
Sbjct: 323 KTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 21/213 (9%)

Query: 78  TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA----------SGGL 127
              A      + F      G     I G    + +   + DG  +A           G  
Sbjct: 19  NDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGER 76

Query: 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA---------GSEDSTVWMWNA 178
              V+++DP +      +E P      V  +P    +            S    V + + 
Sbjct: 77  TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL 136

Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238
           +  A+  M                    C     A +      + E  H    HP     
Sbjct: 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196

Query: 239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
           +     S  +   +  +  G +H +++++G   
Sbjct: 197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK 229

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.2 bits (123), Expect = 2e-08
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209
           G    +   P G  +   +  ++V+           +++ H    T    +P G    +G
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 210 SDDATLRVWNPKSGENIHVIRGHPYH 235
                +R+W+     +I       + 
Sbjct: 77  DVHGNVRIWDTTQTTHILKTTIPVFS 102

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.2 bits (123), Expect = 2e-08
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 92  WRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
                 D + +   H  SV  L +S DG  +AS   D  ++IW+ ++  ++ T+      
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 152 VEWV-SWHPRGHIVLAGSEDSTVWMWNAD 179
            +           +++ S +  +   N +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.8 bits (122), Expect = 2e-08
 Identities = 45/275 (16%), Positives = 78/275 (28%), Gaps = 54/275 (19%)

Query: 67  VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126
              +  +P    +    G     +   +           H    +    S  G   ASG 
Sbjct: 20  AVVLGNTPAGDKIQYCNGTSV--YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW----------------------------- 157
           + G V+IWD +          P                                      
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137

Query: 158 ------------------HPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
                               R   +++GS+D+TV ++      + + F  H   V    +
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197

Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE----GLTCLTISADSTLALSGS 255
            PDG    +   D T+ ++N   G    V              +  LT S D T   S S
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257

Query: 256 KDGSVHMVNITTGKVVSSLVSHTD-SIECIGFSRS 289
            D ++ + N+ T KV  ++   T    + +G   +
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 292

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.4 bits (121), Expect = 3e-08
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213
              +   G        +                   H  SV    ++PDG  I + S D 
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260

Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
           T+++WN  + +    I       +    L I       +S S +G ++ VN 
Sbjct: 261 TIKIWNVATLKVEKTIPVGTRIED--QQLGIIWTKQALVSISANGFINFVNP 310

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 20/158 (12%), Positives = 42/158 (26%), Gaps = 8/158 (5%)

Query: 79  LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138
              T     +      +  +  + +     +V     S  G+ L   G DG V + D   
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWM 92

Query: 139 GNLKCTLE-----GPGGGVEWVSWHPRGHIVLAGSEDS-TVWMWNADRAAYLNMFSGHGS 192
                  E                       +AG+       + + +      + S  G 
Sbjct: 93  KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152

Query: 193 SVTCGDFTPDGKTI-CTGSDDATLRVWNPKSGENIHVI 229
           +    ++ P+ +      S      + N K    I ++
Sbjct: 153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 190

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 22/222 (9%), Positives = 48/222 (21%), Gaps = 13/222 (5%)

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-----------GHKDS 109
           S       S      D   +A      +         +                   +  
Sbjct: 105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 164

Query: 110 VSSLAFSMDGQ-LLASGGLDGLVQIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
           V+++  S      + +    G + + D +   NLK T       +            +  
Sbjct: 165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA 224

Query: 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
           +      +    +   L      G          +      G   AT  + +        
Sbjct: 225 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT 284

Query: 228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
              GHP +   +     +         +   S ++    T  
Sbjct: 285 DPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 326

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 9/128 (7%), Positives = 32/128 (25%), Gaps = 4/128 (3%)

Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
             +   +   + + +        +    G +V     +  G+ +     D  + + +   
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92

Query: 223 GENIHV--IRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHTD 279
            E   V  I+         T      +               +++  T +      +   
Sbjct: 93  KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152

Query: 280 SIECIGFS 287
           + +   + 
Sbjct: 153 TYDEQEYH 160

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 15/134 (11%)

Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164
            +   +     ++ G  L          ++  ++ N       P   +           +
Sbjct: 291 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-------PEAEISGSVAVFDIKAM 343

Query: 165 LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-----CTGSDDATLRVWN 219
                D           A +   +     V  G+F  DG  +          ++ L V +
Sbjct: 344 TGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400

Query: 220 PKSGENIHVIRGHP 233
            K+ E  HVI+   
Sbjct: 401 DKTLELKHVIKDER 414

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 11/96 (11%)

Query: 199 FTPDGKTI--CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256
              D + +   T  D   + + +  + E   V+         +    +SA         +
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGR 81

Query: 257 DGSVHMVNITTGKV-----VSSLVSHTDSIECIGFS 287
           DG V+M+++   +      +                
Sbjct: 82  DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG 117

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 20/169 (11%), Positives = 43/169 (25%), Gaps = 8/169 (4%)

Query: 79  LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138
              T     +      +       I     +V     S  G+ L   G D  + + D  +
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWA 92

Query: 139 GNLKCTLE-----GPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGS 192
                  E                       +AG+       + + +      + S  G 
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 193 SVTCGDFTPDGKT-ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
           +V    + P+ +      S +    + N K    + ++         +T
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT 201

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.6 bits (112), Expect = 7e-07
 Identities = 10/136 (7%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214
                     +   +   + + + D    + +    G +V     +  G+ +     DA 
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSASGRYLLVIGRDAR 84

Query: 215 LRVWNPKSGENIHV--IRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKVV 271
           + + +  + E   V  I+         +      +               +++  T +  
Sbjct: 85  IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144

Query: 272 SSLVSHTDSIECIGFS 287
             + +   +++   + 
Sbjct: 145 QIVSTRGMTVDTQTYH 160

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 27/203 (13%), Positives = 55/203 (27%), Gaps = 29/203 (14%)

Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
              +  +  ++          D  L A           R      A+ +      V S +
Sbjct: 217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR-----GANFVHPKYGPVWSTS 271

Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-------G 167
              DG +   G        +          L+G GGG  ++  HP+   +          
Sbjct: 272 HLGDGSISLIGTDPKNHPQYA---WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 328

Query: 168 SEDSTVWMWNAD---------RAAYLNMFSGHGSSVTCGDFTPDGKTI-----CTGSDDA 213
               +V +++             A           V   ++   G  +        +D +
Sbjct: 329 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS 388

Query: 214 TLRVWNPKSGENIHVIRGHPYHT 236
            L V + K+ +   V++     T
Sbjct: 389 ALVVVDDKTLKLKAVVKDPRLIT 411

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 8e-07
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 2/89 (2%)

Query: 90  FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGP 148
                 +    + I        +    ++  L+A+G LD  + I+       +   L   
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 257

Query: 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
             GV  + W     +V +   D+ +  WN
Sbjct: 258 KDGVNNLLWETPSTLV-SSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 3e-06
 Identities = 34/275 (12%), Positives = 77/275 (28%), Gaps = 51/275 (18%)

Query: 54  DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
           D+     SGH+  + ++  +P     + +G  D +   W       +S  Q H + + SL
Sbjct: 3   DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSL 52

Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCT--LEGPGGGVEWVSWHPRGHIVLAGSEDS 171
             S   +  +    D L                      G   V  +    ++L      
Sbjct: 53  DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 112

Query: 172 TVWMWNADRAAYLNMFSGHG------------------------------SSVTCGDFTP 201
            +     +        S +                               +  +    +P
Sbjct: 113 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 172

Query: 202 DGKTICTGSDDATLRVWNPKSGE--------NIHVIRGHPYHTEGLTCLTISADSTLALS 253
               I  G     + +++ +S E            I    +            +  L  +
Sbjct: 173 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232

Query: 254 GSKDGSVHMVNI-TTGKVVSSLVSHTDSIECIGFS 287
           GS D ++ + ++    K++ +L +H D +  + + 
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 4e-06
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFS 116
                             +  LVATG  D   F + + +       +  HKD V++L + 
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267

Query: 117 MDGQLLASGGLDGLVQIWD 135
                L S G D  ++ W+
Sbjct: 268 TPST-LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 5/113 (4%)

Query: 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213
                    ++             A R + +N  S   +     +   +   + TGS D 
Sbjct: 178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237

Query: 214 TLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
            + +++ K   + I  +     H +G+  L     STL  S   D  +   N+
Sbjct: 238 NIFIYSVKRPMKIIKALNA---HKDGVNNLLWETPSTLV-SSGADACIKRWNV 286

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 12/103 (11%), Positives = 28/103 (27%), Gaps = 3/103 (2%)

Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTI-CTGSDDATLRVWN 219
           + +A  E   + +WN +    L +         V     +PD + +      +  +  + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
               +              LT ++          GS +     
Sbjct: 66  IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVS 108

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 10/80 (12%)

Query: 90  FFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGP 148
                      + I    D  + +A + DG+ +  +      V + D ++  +  T+   
Sbjct: 227 SMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA-- 283

Query: 149 GGGVEWVSWHPRGHIVLAGS 168
                 V  +P       GS
Sbjct: 284 ------VGKNPYASGQFIGS 297

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNIT 266
             S+   + V +  S +    I              IS D + + ++ +    V +++  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 267 TGKV 270
           T  V
Sbjct: 63  TNNV 66

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 2/71 (2%)

Query: 166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDDATLRVWNPKSGE 224
           A SE   + + +             GS+      +PDG  +    +    + + +  +  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 225 NIHVIRGHPYH 235
            I  +      
Sbjct: 66  VIATVPAGSSP 76

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 14/129 (10%), Positives = 42/129 (32%), Gaps = 8/129 (6%)

Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-- 207
              + ++  P G  V   + DS            +       ++ +     P+G      
Sbjct: 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVT 217

Query: 208 -TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNI 265
                  T+ + +  + +    I   P        + ++ D   + ++ S   +V +++ 
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVGP----DPAGIAVTPDGKKVYVALSFCNTVSVIDT 273

Query: 266 TTGKVVSSL 274
            T  + +++
Sbjct: 274 ATNTITATM 282

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 26/215 (12%), Positives = 52/215 (24%), Gaps = 29/215 (13%)

Query: 67  VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126
           + +     T     +T    ++         +    +    +     A    G     G 
Sbjct: 178 LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIGD 236

Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186
              +  +           +  P       +     + +  G    TV +   D+    ++
Sbjct: 237 -SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK--LDDL 293

Query: 187 FSGHGSSVTC-------------GDFTPDGKTICTGSDDATLRVWNPK------SGENIH 227
           F                        F   G    T   D+ +  WN        +G+ ++
Sbjct: 294 FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVN 353

Query: 228 VIRG------HPYHTEGLTCLTISADSTLALSGSK 256
            IR        P H       +  AD    +  SK
Sbjct: 354 YIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.85
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.54
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.54
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.53
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.52
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.49
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.47
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.41
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.41
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.4
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.4
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.37
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.32
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.25
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.21
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.2
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.19
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.19
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.11
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.08
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.99
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.97
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.87
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.86
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.76
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.7
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.51
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.39
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.34
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.21
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.15
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.14
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.88
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.87
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.84
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.81
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.74
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.54
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.44
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.39
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.29
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	97.28
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.27
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.24
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.21
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	97.12
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.89
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.88
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.75
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.41
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.99
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.99
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.75
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.44
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.18
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.08
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	91.76
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	90.66
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.56
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	90.09
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	86.02

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-41  Score=276.02  Aligned_cols=237  Identities=22%  Similarity=0.419  Sum_probs=212.6

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      ......++|+||+++|++++|+| ++.+||+|+.||+|+|||+.+++.+..+..|..+|.+++|+|+++++++++.|+.+
T Consensus        43 ~~~~~~~tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i  121 (340)
T d1tbga_          43 IQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             cceeeeEEECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccccee
Confidence            34567889999999999999999 78899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCc----eEEE-----------------------------------------EecCCCCEEEEEEcCCCCEEEE
Q 022910          132 QIWDPSSGN----LKCT-----------------------------------------LEGPGGGVEWVSWHPRGHIVLA  166 (290)
Q Consensus       132 ~i~d~~~~~----~~~~-----------------------------------------~~~~~~~i~~i~~~~~~~~l~~  166 (290)
                      ++|+.....    ....                                         ...+...+....+.+.+.++++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            999865321    1111                                         1223445777888888999999


Q ss_pred             eeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC
Q 022910          167 GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (290)
Q Consensus       167 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (290)
                      ++.++.|++||+++++++..+.+|...|++++|+|++++|++|+.||.|++|+++.......+.... +...+++++|+|
T Consensus       202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~  280 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN-IICGITSVSFSK  280 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-CCSCEEEEEECS
T ss_pred             eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccc-ccCceEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999988877665433 677899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          247 DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       247 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|+|
T Consensus       281 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~  324 (340)
T d1tbga_         281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG  324 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC
Confidence            99999999999999999999999999999999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-41  Score=271.11  Aligned_cols=235  Identities=21%  Similarity=0.413  Sum_probs=211.7

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC--------------
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM--------------  117 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~--------------  117 (290)
                      +.+.+...|+||+++|++|+|+| ++.+|+||+.||+|+|||+.+++.+..+.+|...|.+++|+|              
T Consensus         5 p~~~~~~~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~   83 (317)
T d1vyhc1           5 PRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI   83 (317)
T ss_dssp             CCSSCSCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             CCCCccEEEcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccc
Confidence            34456678999999999999999 778999999999999999998887777766666666655554              


Q ss_pred             ----------------------------CCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC
Q 022910          118 ----------------------------DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE  169 (290)
Q Consensus       118 ----------------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  169 (290)
                                                  +++.+++++.|+.+++|++.+++.+..+..|...+.+++|+|++++|++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  163 (317)
T d1vyhc1          84 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN  163 (317)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC
Confidence                                        4556777888899999999999999999999999999999999999999999


Q ss_pred             CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC--------------------CEEEEEeCCCeEEEEcCCCCeeeEEE
Q 022910          170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG--------------------KTICTGSDDATLRVWNPKSGENIHVI  229 (290)
Q Consensus       170 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~~~~dg~i~i~d~~~~~~~~~~  229 (290)
                      ++.|++|++.+++....+..+...+.++.|+|++                    .++++++.|+.|++|++++++++..+
T Consensus       164 d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  243 (317)
T d1vyhc1         164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  243 (317)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE
Confidence            9999999999999999999999999999998753                    46899999999999999999999888


Q ss_pred             eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ..   |...|.+++|+|++++|++|+.||.|++||+.+++++.++.+|.++|++++|+|++
T Consensus       244 ~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~  301 (317)
T d1vyhc1         244 VG---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA  301 (317)
T ss_dssp             EC---CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS
T ss_pred             eC---CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence            87   78899999999999999999999999999999999999999999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.6e-41  Score=272.74  Aligned_cols=236  Identities=21%  Similarity=0.321  Sum_probs=210.3

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee--eeeccccCCEEEEEECCCCCEEEEEeC--C
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMDGQLLASGGL--D  128 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~--d  128 (290)
                      .....+.+.+|.+.|++++|+| ++++||+|+.||+|+||++.++...  ..+..|..+|.+++|+|++++|++++.  +
T Consensus        47 ~~~~~~~~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~  125 (311)
T d1nr0a1          47 SLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE  125 (311)
T ss_dssp             CSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             CCceeEEEcCCCCCEEEEEEeC-CCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccc
Confidence            3566778899999999999999 7889999999999999999887643  457789999999999999999999875  4


Q ss_pred             CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCE-EEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE
Q 022910          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI-VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  207 (290)
                      ..++||++.+++....+.+|...|++++|+|++++ |++|+.||.|++||+++++....+..|..+|.++.|+|++++|+
T Consensus       126 ~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~  205 (311)
T d1nr0a1         126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA  205 (311)
T ss_dssp             CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccc
Confidence            56999999999999999999999999999999884 88899999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEcCCCCeeeEEEeCC----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCC---c
Q 022910          208 TGSDDATLRVWNPKSGENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD---S  280 (290)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---~  280 (290)
                      +++.|+.|++||++++.....+...    ..|...|++++|+|++++|++|+.||.|++||++++++++++..|..   .
T Consensus       206 ~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~  285 (311)
T d1nr0a1         206 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ  285 (311)
T ss_dssp             EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccce
Confidence            9999999999999998887776532    23678899999999999999999999999999999999999987653   5


Q ss_pred             EEEEEEecC
Q 022910          281 IECIGFSRS  289 (290)
Q Consensus       281 v~~i~~s~d  289 (290)
                      +.++.|+++
T Consensus       286 ~~~~~~~~~  294 (311)
T d1nr0a1         286 QLGIIWTKQ  294 (311)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEecCC
Confidence            567777654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-39  Score=271.36  Aligned_cols=227  Identities=16%  Similarity=0.200  Sum_probs=196.3

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (290)
                      +.++|+|++|+| ++.+||+|+.+|.|+||++.+++  .+..+.+|.++|.+++|+|++++|++++.|++|+||++.++.
T Consensus         6 ~~~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           6 LVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             CSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            357899999999 88899999999999999998775  566788999999999999999999999999999999998776


Q ss_pred             eEE--EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE----EEeeecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 022910          141 LKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (290)
Q Consensus       141 ~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  214 (290)
                      ...  .+..|...|++++|+|+++.|++++.++.|++|++.....    ......|...|.+++|+|++++|++|+.|+.
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence            543  4456788899999999999999999999999999876542    3344568889999999999999999999999


Q ss_pred             EEEEcCCCCeee---------------EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCC
Q 022910          215 LRVWNPKSGENI---------------HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD  279 (290)
Q Consensus       215 i~i~d~~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  279 (290)
                      |++|++......               ..+.....|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..|..
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc
Confidence            999998653210               11111223778899999999999999999999999999999999999999999


Q ss_pred             cEEEEEEecCC
Q 022910          280 SIECIGFSRSE  290 (290)
Q Consensus       280 ~v~~i~~s~d~  290 (290)
                      +|++++|+|++
T Consensus       245 ~v~s~~fs~d~  255 (371)
T d1k8kc_         245 PLLAVTFITES  255 (371)
T ss_dssp             CEEEEEEEETT
T ss_pred             cceeeeecCCC
Confidence            99999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-38  Score=256.81  Aligned_cols=228  Identities=18%  Similarity=0.254  Sum_probs=206.8

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--CeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ......+|.+.|.+++|+| ++.+|++|+.||.|++|++..  .+....+..|...+.+++|+|++.++++++.++.|++
T Consensus        89 ~~~~~~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~  167 (337)
T d1gxra_          89 SQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV  167 (337)
T ss_dssp             EEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEeeecCCCCcEEEEEEcC-CCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445568999999999999 778899999999999999875  4556677889999999999999999999999999999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  213 (290)
                      |++.++++......|...+.+++|++++..+++++.++.|++||+++++.+..+. +...|.+++|+|++++|++++.++
T Consensus       168 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~  246 (337)
T d1gxra_         168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccc
Confidence            9999999999999999999999999999999999999999999999998887765 788999999999999999999999


Q ss_pred             eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .|++||+++++..... .   |...|++++|+|++++|++|+.||.|++||+.+++++..+. |.+.|++++|+|+|
T Consensus       247 ~i~i~d~~~~~~~~~~-~---~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~  318 (337)
T d1gxra_         247 NVEVLHVNKPDKYQLH-L---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDD  318 (337)
T ss_dssp             CEEEEETTSSCEEEEC-C---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS
T ss_pred             cccccccccccccccc-c---cccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCC
Confidence            9999999988765433 2   78899999999999999999999999999999999998765 67899999999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-38  Score=259.12  Aligned_cols=228  Identities=20%  Similarity=0.360  Sum_probs=203.5

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee-----eeeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-----SEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      +.+..+ +|...|+|++|+| ++.+|++|+ ||.|+|||+.++...     .....|.+.|.+++|+|++++|++++.||
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg  119 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             eEEEEC-CCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence            334444 7999999999999 888999987 899999999765322     23346889999999999999999999999


Q ss_pred             cEEEEcCCCC--ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE
Q 022910          130 LVQIWDPSSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (290)
Q Consensus       130 ~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  207 (290)
                      .|++||+...  +....+..|...+.+++|+|++.++++++.++.|++|++++++.......|...|.+++|++++..++
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~  199 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999998754  45567778888999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEe
Q 022910          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS  287 (290)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s  287 (290)
                      +++.|+.|++||+++++.+..+.    +...|.+++|+|++++|++|+.||.|++|++++++.. ....|...|++++|+
T Consensus       200 ~~~~d~~v~i~d~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s  274 (337)
T d1gxra_         200 TGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFA  274 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEEC
T ss_pred             cccccccccccccccceeecccc----cccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEEC
Confidence            99999999999999999887776    6788999999999999999999999999999988875 456789999999999


Q ss_pred             cCC
Q 022910          288 RSE  290 (290)
Q Consensus       288 ~d~  290 (290)
                      |+|
T Consensus       275 ~~g  277 (337)
T d1gxra_         275 YCG  277 (337)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.5e-38  Score=253.88  Aligned_cols=223  Identities=19%  Similarity=0.242  Sum_probs=199.1

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (290)
                      +++.+..++++| ++..|+.+. ++.|.+|++.++.....+.+|...|++++|+|++++|++|+.||+|+||++.+++..
T Consensus        16 ~r~~~~~~a~~~-~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          16 ARGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CTTCCCCCEECT-TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCeEEEEEcC-CCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            455677899999 566666664 567999999999998999999999999999999999999999999999999887654


Q ss_pred             --EEEecCCCCEEEEEEcCCCCEEEEeeC--CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE-EEEEeCCCeEEE
Q 022910          143 --CTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT-ICTGSDDATLRV  217 (290)
Q Consensus       143 --~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i  217 (290)
                        ..+..|..+|.+++|+|++++|++++.  +..+++|++++++....+.+|...|++++|+|++++ |++|+.||.|++
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i  173 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI  173 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred             cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence              457788999999999999999999886  456999999999999999999999999999998875 788999999999


Q ss_pred             EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-------cCCCcEEEEEEecCC
Q 022910          218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-------SHTDSIECIGFSRSE  290 (290)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------~~~~~v~~i~~s~d~  290 (290)
                      ||+++++....+..   |...|+++.|+|++++|++++.||.|++|++.+++.+..+.       +|.+.|++++|+|+|
T Consensus       174 ~d~~~~~~~~~~~~---~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~  250 (311)
T d1nr0a1         174 FEGPPFKFKSTFGE---HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  250 (311)
T ss_dssp             EETTTBEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             cccccccccccccc---ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence            99999988887776   78899999999999999999999999999999999888775       578899999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-37  Score=256.67  Aligned_cols=228  Identities=26%  Similarity=0.441  Sum_probs=184.7

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec------------------cccCCEEEEEECCCCC
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ------------------GHKDSVSSLAFSMDGQ  120 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------------------~~~~~i~~~~~~~~~~  120 (290)
                      ...+|++.|+||+|+| ++.+||+|+ |+.|+||++.+++.+..+.                  .|...|++++|+|+++
T Consensus        57 ~~~~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~  134 (388)
T d1erja_          57 KSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  134 (388)
T ss_dssp             EEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             eeCCCCCcEEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence            3447999999999999 778999986 8999999999887766553                  3566799999999999


Q ss_pred             EEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-------------------
Q 022910          121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-------------------  181 (290)
Q Consensus       121 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-------------------  181 (290)
                      +|++|+.||.|++|+...++.+..+.+|...|.++.|++++..+++++.++.+++||+++.                   
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  214 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP  214 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             cceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccC
Confidence            9999999999999999999999888888888888888887777776666666666666543                   


Q ss_pred             -----------------------cEEEee-------ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEe-
Q 022910          182 -----------------------AYLNMF-------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR-  230 (290)
Q Consensus       182 -----------------------~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  230 (290)
                                             .....+       .+|...|.+++|+|++++|++++.||.|++||++++....... 
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  294 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT  294 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc
Confidence                                   222221       2466789999999999999999999999999998765432211 


Q ss_pred             --------CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          231 --------GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       231 --------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                              ....|...|.+++|+|++++|++|+.||.|++||+.+++++.++++|.+.|+++++++
T Consensus       295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~  360 (388)
T d1erja_         295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN  360 (388)
T ss_dssp             ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred             ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEec
Confidence                    1112678899999999999999999999999999999999999999999999998643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.7e-36  Score=242.28  Aligned_cols=233  Identities=15%  Similarity=0.206  Sum_probs=190.1

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ...+.+.||.++|++++|+| ++.+|++|+.||+|++||+.+++....+. .|...|++++|+|++++ ++++.|+.+++
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~   80 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV   80 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred             ccceEcCCCCCCcEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEE
Confidence            45789999999999999999 78899999999999999999998888774 68999999999999875 55667999999


Q ss_pred             EcCCCCce-------------------------E--------EEE-------ecCCCCEEEEEEcCCCCEEEEeeCCCeE
Q 022910          134 WDPSSGNL-------------------------K--------CTL-------EGPGGGVEWVSWHPRGHIVLAGSEDSTV  173 (290)
Q Consensus       134 ~d~~~~~~-------------------------~--------~~~-------~~~~~~i~~i~~~~~~~~l~~~~~dg~i  173 (290)
                      |+......                         +        ..+       ......+.+++|+|++++|++|+.+|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  160 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            98643210                         0        000       0123457889999999999999999999


Q ss_pred             EEEECCcccEEE-eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEE
Q 022910          174 WMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL  252 (290)
Q Consensus       174 ~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (290)
                      ++||+++++... ....|...|.+++|+|++++|++++.++.|++||+.++...........|...|++++|+|++++|+
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  240 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA  240 (299)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceE
Confidence            999998776543 3446889999999999999999999999999999988776655555555889999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCcE--EEEEcc-CCCcEEEEEEecC
Q 022910          253 SGSKDGSVHMVNITTGKV--VSSLVS-HTDSIECIGFSRS  289 (290)
Q Consensus       253 ~~~~dg~i~~wd~~~~~~--~~~~~~-~~~~v~~i~~s~d  289 (290)
                      +|+.||.|++||+.++..  +..... +...|.++.|.++
T Consensus       241 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  280 (299)
T d1nr0a2         241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE  280 (299)
T ss_dssp             EEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEET
T ss_pred             EEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCC
Confidence            999999999999987653  333333 3457888877654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.5e-35  Score=242.43  Aligned_cols=206  Identities=19%  Similarity=0.245  Sum_probs=177.5

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee--eeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      ..+..+++|.++|++++|+| ++++|++|+.|++|+||++.++...  ..+..|...|++++|+|++++|++++.++.|+
T Consensus        42 ~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~  120 (371)
T d1k8kc_          42 VQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS  120 (371)
T ss_dssp             EEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred             EEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcce
Confidence            46778899999999999999 7789999999999999999876544  44567889999999999999999999999999


Q ss_pred             EEcCCCCceE----EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc------------------cEEEeeecC
Q 022910          133 IWDPSSGNLK----CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA------------------AYLNMFSGH  190 (290)
Q Consensus       133 i~d~~~~~~~----~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~------------------~~~~~~~~~  190 (290)
                      +|++......    .....|...|.+++|+|++++|++|+.|+.|++|++...                  ..+.....|
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (371)
T d1k8kc_         121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS  200 (371)
T ss_dssp             EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred             eeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCc
Confidence            9998766543    233457788999999999999999999999999998643                  345566678


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       191 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      ...|.+++|+|++++|++++.|+.|++||+.+++.+..+..   |..+|.+++|+|++++|++|. |+.+++|..
T Consensus       201 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~  271 (371)
T d1k8kc_         201 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS---ETLPLLAVTFITESSLVAAGH-DCFPVLFTY  271 (371)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC---SSCCEEEEEEEETTEEEEEET-TSSCEEEEE
T ss_pred             cCcEEEEEeecccccccccccCCcceEEeeecccceeeeec---ccccceeeeecCCCCEEEEEc-CCceEEEEe
Confidence            89999999999999999999999999999999998888876   778899999999998887665 776666554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-34  Score=234.84  Aligned_cols=228  Identities=23%  Similarity=0.469  Sum_probs=190.3

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      +.++.+.|+||.+.|.+ ++++ ++++||||+.||+|+|||+.+++++..+.+|...|.+++|+|+  +|++++.|+.++
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~-~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~   80 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLK   80 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred             CCCcCEEECCcCCceEE-EEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccc
Confidence            45678899999999864 3444 4578999999999999999999999999999999999999864  899999999999


Q ss_pred             EEcCCCCceE----------------------------------------------------------------------
Q 022910          133 IWDPSSGNLK----------------------------------------------------------------------  142 (290)
Q Consensus       133 i~d~~~~~~~----------------------------------------------------------------------  142 (290)
                      +|+.......                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence            9986532111                                                                      


Q ss_pred             ----------EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          143 ----------CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       143 ----------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                                ..+..|..  ....+++++.+|++++.||.|++||++.++.+..+..|...+.++.++  +++|++++.|
T Consensus       161 ~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d  236 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTN--RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD  236 (342)
T ss_dssp             EEEGGGTEEEEEECCCSS--CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETT
T ss_pred             EeecccceeeEEEcCccc--ccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCC
Confidence                      01112222  233444578899999999999999999999999999999999988876  4699999999


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-----cCCCcEEEEEEe
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-----SHTDSIECIGFS  287 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-----~~~~~v~~i~~s  287 (290)
                      |.|++||+...+....+..+..|...+.++.++  ++++++|+.||.|++||++++++++++.     +|.+.|++++|+
T Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s  314 (342)
T d2ovrb2         237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS  314 (342)
T ss_dssp             SCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred             CEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEEC
Confidence            999999999999888888877778888888775  5699999999999999999999998875     567789999999


Q ss_pred             cCC
Q 022910          288 RSE  290 (290)
Q Consensus       288 ~d~  290 (290)
                      |++
T Consensus       315 ~~~  317 (342)
T d2ovrb2         315 NTK  317 (342)
T ss_dssp             SSE
T ss_pred             CCC
Confidence            985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-34  Score=235.57  Aligned_cols=225  Identities=20%  Similarity=0.275  Sum_probs=187.8

Q ss_pred             CCCCceeeeccCC-cCEEEEEECCC-CCcEEEEecCCCcEEEEEccCCeee--------eeeccccCCEEEEEECCCCCE
Q 022910           52 QPDDSTHIFSGHS-DEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDWA--------SEIQGHKDSVSSLAFSMDGQL  121 (290)
Q Consensus        52 ~~~~~~~~~~~h~-~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~  121 (290)
                      ........+.+|. ..|++++|+|. ++.+|++|+.||+|+||++..++..        ..+..|.++|.+++|++++++
T Consensus        50 ~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~  129 (325)
T d1pgua1          50 SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR  129 (325)
T ss_dssp             CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             CCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCc
Confidence            3456677888885 68999999984 5679999999999999998764322        234568889999999999999


Q ss_pred             EEEEeC--CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCE-EEEeeCCCeEEEEECCcccEEEee---ecCCCCeE
Q 022910          122 LASGGL--DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI-VLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVT  195 (290)
Q Consensus       122 l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~  195 (290)
                      |++++.  ++.+++|+..+++.+..+.+|...|.+++|+|++.+ +++++.|+.|++|++...+....+   ..|...|.
T Consensus       130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~  209 (325)
T d1pgua1         130 LCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR  209 (325)
T ss_dssp             EEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred             cceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccE
Confidence            887764  678999999999999999999999999999998875 678999999999999887765554   35677899


Q ss_pred             EEEEcCC-CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEc---CCCCEEEEEeCCCcEEEEEcCCCcEE
Q 022910          196 CGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS---ADSTLALSGSKDGSVHMVNITTGKVV  271 (290)
Q Consensus       196 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~~wd~~~~~~~  271 (290)
                      +++|+|+ +.+|++++.||.|++||+++++.+..+..   |...+..+.|+   |++++|++++.|+.|++||+++++++
T Consensus       210 ~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~---~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED---DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB---TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             Eeeeccccceeccccccccceeeeeeccccccccccc---cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            9999996 68899999999999999999999888876   44444433333   57899999999999999999999999


Q ss_pred             EEEccCCC
Q 022910          272 SSLVSHTD  279 (290)
Q Consensus       272 ~~~~~~~~  279 (290)
                      ..+..|..
T Consensus       287 ~~~~~~~~  294 (325)
T d1pgua1         287 QKWTLDKQ  294 (325)
T ss_dssp             EEEECCTT
T ss_pred             EEEEecCC
Confidence            99887654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-34  Score=230.50  Aligned_cols=209  Identities=28%  Similarity=0.455  Sum_probs=195.9

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (290)
                      ........+.+|...+.++.|+| ++..+++++.|+.+++|++.+++....+..|...+.+++|+|++++|++++.|+.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v  167 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  167 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccccccccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence            34556777788999999999999 77788899999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCceEEEEecCCCCEEEEEEcCCC--------------------CEEEEeeCCCeEEEEECCcccEEEeeecCC
Q 022910          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRG--------------------HIVLAGSEDSTVWMWNADRAAYLNMFSGHG  191 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~--------------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  191 (290)
                      ++|++.+++....+..+...+.++.|+|+.                    .++++++.|+.|++|++++++++..+.+|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  247 (317)
T d1vyhc1         168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  247 (317)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC
Confidence            999999999999999999999999998753                    478999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910          192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       192 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  264 (290)
                      ..|.+++|+|++++|++++.||.|++||+++++++..+..   |...|++++|+|++++|++|+.||+|++||
T Consensus       248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA---HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC---CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999999999999999999987   788999999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-33  Score=229.35  Aligned_cols=208  Identities=25%  Similarity=0.454  Sum_probs=184.3

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe----eeee--------------------------
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASE--------------------------  102 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~--------------------------  102 (290)
                      ....+..+.+|..+|.+++|+| ++.++++|+.|+.+++|+.....    ....                          
T Consensus        86 ~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (340)
T d1tbga_          86 TTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT  164 (340)
T ss_dssp             TTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTT
T ss_pred             cceeEEEEecccccEEeeEeec-cceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccc
Confidence            4567788899999999999999 78899999999999999975421    1111                          


Q ss_pred             ---------------eccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe
Q 022910          103 ---------------IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG  167 (290)
Q Consensus       103 ---------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  167 (290)
                                     ...+...+....+.+.+.++++++.++.|++||+.+++++..+..|...|++++|+|++++|++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~  244 (340)
T d1tbga_         165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG  244 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEE
Confidence                           12245567888888999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEECCcccEEEeee--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEc
Q 022910          168 SEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS  245 (290)
Q Consensus       168 ~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  245 (290)
                      +.||.|++|+++....+..+.  .+...|.+++|+|++++|++|+.||.|++||+.+++++..+.+   |...|++++|+
T Consensus       245 s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---H~~~V~~l~~s  321 (340)
T d1tbga_         245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---HDNRVSCLGVT  321 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEEC
T ss_pred             eCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC---CCCCEEEEEEe
Confidence            999999999999888776553  4667899999999999999999999999999999999999887   78899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEE
Q 022910          246 ADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       246 ~~~~~l~~~~~dg~i~~wd  264 (290)
                      |++++|++|+.||.|++||
T Consensus       322 ~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         322 DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEccCCEEEEeC
Confidence            9999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-34  Score=233.71  Aligned_cols=222  Identities=20%  Similarity=0.384  Sum_probs=181.4

Q ss_pred             ceeeeccCCcCE-EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910           56 STHIFSGHSDEV-YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (290)
Q Consensus        56 ~~~~~~~h~~~v-~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (290)
                      ...+|+||.+.| +|++|+   +++|++|+.||+|+|||+.+++.+..+.+|.++|++++|+|+ .+|++++.|+.|++|
T Consensus         4 ~~~tL~GH~~~vitc~~~~---~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw   79 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEEEEECCSSSCEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred             CcEEECCcCCCcEEEEEEC---CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccc
Confidence            467899999885 677764   468999999999999999999999999999999999999985 588999999999998


Q ss_pred             cCCCCceEE-----------------------------------------------------------------------
Q 022910          135 DPSSGNLKC-----------------------------------------------------------------------  143 (290)
Q Consensus       135 d~~~~~~~~-----------------------------------------------------------------------  143 (290)
                      ++...+...                                                                       
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            765322110                                                                       


Q ss_pred             ------------------------------------EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee
Q 022910          144 ------------------------------------TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF  187 (290)
Q Consensus       144 ------------------------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  187 (290)
                                                          ....+...+.++.|+|.+.++++++.|+.|++|+++++..+..+
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence                                                01123345567788899999999999999999999999999999


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEE-EEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL-TISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       188 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      .+|...|.+++++  +++|++++.||.|++||+++.......     |...+.++ .+++++.+|++| .||.|++||++
T Consensus       240 ~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~  311 (355)
T d1nexb2         240 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-----HHTNLSAITTFYVSDNILVSG-SENQFNIYNLR  311 (355)
T ss_dssp             CCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEE-----ECTTCCCCCEEEECSSEEEEE-ETTEEEEEETT
T ss_pred             ccccccccccccc--cceeeeeecccccccccccccceeccc-----ccCCceEEEEEcCCCCEEEEE-eCCEEEEEECC
Confidence            9999999999996  469999999999999999987754443     33334443 456677777666 58999999999


Q ss_pred             CCcEEE-EEccCCCcEEEEEEecC
Q 022910          267 TGKVVS-SLVSHTDSIECIGFSRS  289 (290)
Q Consensus       267 ~~~~~~-~~~~~~~~v~~i~~s~d  289 (290)
                      +++++. .+.+|.++|++++|+|+
T Consensus       312 tg~~~~~~~~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         312 SGKLVHANILKDADQIWSVNFKGK  335 (355)
T ss_dssp             TCCBCCSCTTTTCSEEEEEEEETT
T ss_pred             CCCEEEEEecCCCCCEEEEEEcCC
Confidence            999886 46789999999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-34  Score=239.24  Aligned_cols=230  Identities=19%  Similarity=0.263  Sum_probs=177.1

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee------eeee---------------------------
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW------ASEI---------------------------  103 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~---------------------------  103 (290)
                      ....++|.+.|+++++++   .++++++.|++|+||+..+...      ....                           
T Consensus         7 ~~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            456789999999999875   5788999999999999643210      0000                           


Q ss_pred             --------------------------------ccccCCEEEEEECCC-----CCEEEEEeCCCcEEEEcCCCCc------
Q 022910          104 --------------------------------QGHKDSVSSLAFSMD-----GQLLASGGLDGLVQIWDPSSGN------  140 (290)
Q Consensus       104 --------------------------------~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~------  140 (290)
                                                      ..+...+..++|.++     +.++++++.||.+++|++....      
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence                                            012233555666554     3478888888999998864221      


Q ss_pred             -----e----EEE---EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee------ecCCCCeEEEEEcCC
Q 022910          141 -----L----KCT---LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF------SGHGSSVTCGDFTPD  202 (290)
Q Consensus       141 -----~----~~~---~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~i~~~~~~~~  202 (290)
                           .    ...   ...+...+.+++|+|++ +|++|+.||.|++||+++++++..+      .+|..+|.+++|+|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc
Confidence                 0    011   12244568899999987 8999999999999999998876544      458899999999999


Q ss_pred             CCEEEEEeCCC---eEEEEcCCCCeeeEEEeCC----------CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 022910          203 GKTICTGSDDA---TLRVWNPKSGENIHVIRGH----------PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (290)
Q Consensus       203 ~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  269 (290)
                      +++|++|+.|+   .|++||+.+++.+..+...          ..|...|++++|+|++++|++|+.|++|++||+.+++
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            99999999887   4999999999888776522          2488899999999999999999999999999999999


Q ss_pred             EEEEEccCCCcEE----EEEEecCC
Q 022910          270 VVSSLVSHTDSIE----CIGFSRSE  290 (290)
Q Consensus       270 ~~~~~~~~~~~v~----~i~~s~d~  290 (290)
                      ++.++.+|.+.|.    .++|+|++
T Consensus       323 ~~~~l~gH~~~v~~~~~~~~~~~~~  347 (393)
T d1sq9a_         323 RITTLNMHCDDIEIEEDILAVDEHG  347 (393)
T ss_dssp             EEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred             EEEEECCcCCcccCCccEEEECCCC
Confidence            9999999987664    35566553

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-32  Score=229.63  Aligned_cols=205  Identities=28%  Similarity=0.421  Sum_probs=168.1

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (290)
                      ....+|...|++++|+| ++.+|++|+.||.|++|+...++.+..+.+|...|.++.|++++..+++++.++.+++|++.
T Consensus       115 ~~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~  193 (388)
T d1erja_         115 SSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR  193 (388)
T ss_dssp             ----CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccccCCCCCEEEEEECC-CCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecc
Confidence            34457888999999999 78899999999999999999999888888888888888888777666666666666666654


Q ss_pred             C------------------------------------------CceEEEE-------ecCCCCEEEEEEcCCCCEEEEee
Q 022910          138 S------------------------------------------GNLKCTL-------EGPGGGVEWVSWHPRGHIVLAGS  168 (290)
Q Consensus       138 ~------------------------------------------~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~  168 (290)
                      +                                          +.....+       .+|...|.+++|+|++++|++++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  273 (388)
T d1erja_         194 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  273 (388)
T ss_dssp             TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            3                                          3322222       23567899999999999999999


Q ss_pred             CCCeEEEEECCccc------------EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcc
Q 022910          169 EDSTVWMWNADRAA------------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT  236 (290)
Q Consensus       169 ~dg~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  236 (290)
                      .||.|++||+++..            .......|...|.+++|+|++++|++|+.||.|++||+++++++..+.+   |.
T Consensus       274 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~---H~  350 (388)
T d1erja_         274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG---HR  350 (388)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC---CS
T ss_pred             CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeC---CC
Confidence            99999999997653            2344556889999999999999999999999999999999999999987   78


Q ss_pred             cCeEEEEE------cCCCCEEEEEeCCCcEEEEEcC
Q 022910          237 EGLTCLTI------SADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       237 ~~v~~~~~------~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      ..|+++++      +|++.+|++|+.||+|++|+++
T Consensus       351 ~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            88999875      5789999999999999999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-32  Score=219.84  Aligned_cols=221  Identities=15%  Similarity=0.213  Sum_probs=177.2

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      .+++++|+||.++|++++|+|     |++|+.||+|++|++.++     ...|...|.++.|++++ .+++++.|++|++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~   71 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKV   71 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEE
T ss_pred             cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeecccccc
Confidence            467899999999999999987     889999999999998764     35788999999998654 5788999999999


Q ss_pred             EcCCCCc----------------------------------eEEEEecCCCCEEEEEEcCCCCEEEEeeCCC-eEEEEEC
Q 022910          134 WDPSSGN----------------------------------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS-TVWMWNA  178 (290)
Q Consensus       134 ~d~~~~~----------------------------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~i~d~  178 (290)
                      |++...+                                  .+..+. ...  ...++++++..+++++.++ .+++|++
T Consensus        72 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~v~~~~~~~v~~~~~  148 (287)
T d1pgua2          72 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNS--PGSAVSLSQNYVAVGLEEGNTIQVFKL  148 (287)
T ss_dssp             TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS--CEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred             ccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-ccc--eeeeeeccCcceeeeccccceeeeeec
Confidence            9864321                                  111111 111  2345566778888888765 6999999


Q ss_pred             CcccEEEeee-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC----------
Q 022910          179 DRAAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD----------  247 (290)
Q Consensus       179 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------  247 (290)
                      ...+....+. .+..++++++|+|++.+|++|+.||.|++||+.++......  ...|...|.+++|+|.          
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~~~~~~~~  226 (287)
T d1pgua2         149 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR--WAFRTSKINAISWKPAEKGANEEEIE  226 (287)
T ss_dssp             TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC--SCCCSSCEEEEEECCCC------CCS
T ss_pred             cccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc--ccccccccceeeecccccccccccCC
Confidence            8776655544 46788999999999999999999999999999988765432  2337889999999874          


Q ss_pred             CCEEEEEeCCCcEEEEEcCC-CcEEEEEccCCCcEEEEEEecCC
Q 022910          248 STLALSGSKDGSVHMVNITT-GKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       248 ~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +.+|++|+.|++|++|++++ ++++..+.+|.+.|++++|+|++
T Consensus       227 ~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~  270 (287)
T d1pgua2         227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS  270 (287)
T ss_dssp             CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT
T ss_pred             CCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC
Confidence            46899999999999999976 56778888999999999999975

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-32  Score=220.55  Aligned_cols=233  Identities=10%  Similarity=0.039  Sum_probs=174.5

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee---eeccccCCEEEEEECCCC-CEEEEEeCCCcE
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGHKDSVSSLAFSMDG-QLLASGGLDGLV  131 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i  131 (290)
                      .+..+++|++.|++|+|+| ++.+||+|+.||+|+|||+..+....   ...+|..+|.+++|+|++ .+|++|+.||.|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             eEEcCCCCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            4677899999999999999 78899999999999999997654322   233699999999999865 589999999999


Q ss_pred             EEEcCCCCceEEEEecCCC-CEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE----eeec--CCCCeEEEEEcCCCC
Q 022910          132 QIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN----MFSG--HGSSVTCGDFTPDGK  204 (290)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~--~~~~i~~~~~~~~~~  204 (290)
                      ++|++...........+.. ......+.++...+++++.++.+++||++......    ....  .......+.+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            9999998887766655443 34555667788899999999999999987653222    1211  122334556666777


Q ss_pred             EEEEEeCCCeEEEEcCCCCeeeEE-----------------------------------E--------------------
Q 022910          205 TICTGSDDATLRVWNPKSGENIHV-----------------------------------I--------------------  229 (290)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~-----------------------------------~--------------------  229 (290)
                      .+++++.|+.|++|+++.......                                   .                    
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            888888888888888764321100                                   0                    


Q ss_pred             ---eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          230 ---RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       230 ---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                         .....|...+++++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+..++|+|+|
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~  304 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSD  304 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECS
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCC
Confidence               000124446889999999999999999999999999999999988653 234445566654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-31  Score=218.17  Aligned_cols=221  Identities=16%  Similarity=0.186  Sum_probs=182.1

Q ss_pred             CEEEEEECCCCCcEEEEecCC-CcEEEEEccCC--eeeeeeccc-cCCEEEEEECC--CCCEEEEEeCCCcEEEEcCCCC
Q 022910           66 EVYSVACSPTDATLVATGGGD-DKGFFWRINQG--DWASEIQGH-KDSVSSLAFSM--DGQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~--~~~~~~~~~-~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      .+++++|+| .+..|+.++.+ ..|+.|+....  .....+.+| ...|++++|+|  ++.+|++|+.||+|+|||+..+
T Consensus        19 ~~t~l~~~~-~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          19 FTTHLSYDP-TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             CCCCCEEET-TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CeEEEEECC-CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            467899999 55566665433 34566665443  345566677 46799999998  5679999999999999998765


Q ss_pred             ceE--------EEEecCCCCEEEEEEcCCCCEEEEeeC--CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE-EEE
Q 022910          140 NLK--------CTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT-ICT  208 (290)
Q Consensus       140 ~~~--------~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~  208 (290)
                      +..        ..+..+.++|.+++|++++++|++++.  ++.+++|+..+++.+..+.+|...|.+++|+|++.+ +++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence            432        234567889999999999999887764  678999999999999999999999999999998765 678


Q ss_pred             EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEe
Q 022910          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS  287 (290)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s  287 (290)
                      ++.|+.|++||....+....+..+..+...|++++|+|+ +.+|++++.||.|++||+++++++..+.+|..++.++.|+
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s  257 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA  257 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred             eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceee
Confidence            999999999999998888888777778889999999996 6899999999999999999999999999988877666555

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-30  Score=206.11  Aligned_cols=222  Identities=26%  Similarity=0.518  Sum_probs=184.5

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      .+.+..+..|...|+|++|   ++++||+|+.||+|+|||+.+++++..+.+|...|++++|  ++++|++|+.|+.|++
T Consensus         5 ~~~i~~~~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~   79 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV   79 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             EEEEeccCCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccc
Confidence            4566777889999999876   4578999999999999999999999999999999999987  6789999999999999


Q ss_pred             EcCCCCceEEEE-------------------------------------------ecCCCCEEEEEEcCCCCEEEEeeCC
Q 022910          134 WDPSSGNLKCTL-------------------------------------------EGPGGGVEWVSWHPRGHIVLAGSED  170 (290)
Q Consensus       134 ~d~~~~~~~~~~-------------------------------------------~~~~~~i~~i~~~~~~~~l~~~~~d  170 (290)
                      |++..+......                                           ..|...+..+.+.  ...+++++.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d  157 (293)
T d1p22a2          80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD  157 (293)
T ss_dssp             EESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCC
Confidence            998765433221                                           2233445554443  4578889999


Q ss_pred             CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCE
Q 022910          171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL  250 (290)
Q Consensus       171 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (290)
                      +.|++|++++++.+..+.++...+..+.++  +.++++++.||.|++||+++...+.....   +...+..  +++++.+
T Consensus       158 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~--~~~~~~~  230 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG---HEELVRC--IRFDNKR  230 (293)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEE--EECCSSE
T ss_pred             CceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecc---cceeeee--ccccceE
Confidence            999999999999999999999999888775  56899999999999999999998887776   5556654  5567889


Q ss_pred             EEEEeCCCcEEEEEcCC---------CcEEEEEccCCCcEEEEEEecC
Q 022910          251 ALSGSKDGSVHMVNITT---------GKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       251 l~~~~~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      |++|+.||.|++||+.+         ..++..+.+|.+.|++++|++.
T Consensus       231 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~  278 (293)
T d1p22a2         231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF  278 (293)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSS
T ss_pred             EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCC
Confidence            99999999999999743         4578999999999999999763

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=7.5e-30  Score=205.05  Aligned_cols=209  Identities=20%  Similarity=0.253  Sum_probs=164.9

Q ss_pred             Cceeee-ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee-------------ee-------------------
Q 022910           55 DSTHIF-SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-------------AS-------------------  101 (290)
Q Consensus        55 ~~~~~~-~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------~~-------------------  101 (290)
                      ...+.+ .+|...|++++|+| ++.++ +++.|+.+++|+......             ..                   
T Consensus        45 ~~~~~~~~~h~~~v~~v~~~~-~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i  122 (299)
T d1nr0a2          45 ISNRVFPDVHATMITGIKTTS-KGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI  122 (299)
T ss_dssp             CEEECSSCSCSSCEEEEEECT-TSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEE
T ss_pred             cEEEEEcCCCCCcEEEEEeec-cceee-cccceeeEEEeccCCccccccccccccccccccccccccccccccccccccc
Confidence            444555 47999999999999 56655 556789999998743210             00                   


Q ss_pred             -ee-------ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE-EEecCCCCEEEEEEcCCCCEEEEeeCCCe
Q 022910          102 -EI-------QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGSEDST  172 (290)
Q Consensus       102 -~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~  172 (290)
                       .+       ......+.+++|+|++++|++++.+|.|++||+.+++... ....|...|++++|+|++.+|++++.++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  202 (299)
T d1nr0a2         123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK  202 (299)
T ss_dssp             EEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             00       0123467889999999999999999999999998877554 34468889999999999999999999999


Q ss_pred             EEEEECCcccEE---EeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC
Q 022910          173 VWMWNADRAAYL---NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST  249 (290)
Q Consensus       173 i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  249 (290)
                      |++|++.++...   ..+..|..+|++++|+|++++|++|+.||.|++||++++.....+.....+...+.++.| +++.
T Consensus       203 i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~  281 (299)
T d1nr0a2         203 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNET  281 (299)
T ss_dssp             EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETT
T ss_pred             cccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCC
Confidence            999999887654   345668899999999999999999999999999999987655444433335566777766 4577


Q ss_pred             EEEEEeCCCcEEEEEcC
Q 022910          250 LALSGSKDGSVHMVNIT  266 (290)
Q Consensus       250 ~l~~~~~dg~i~~wd~~  266 (290)
                      +|++|+.||.|++||+.
T Consensus       282 ~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         282 TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEEETTSCEEEEECC
T ss_pred             EEEEEeCCCEEEEEecc
Confidence            99999999999999984

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.4e-27  Score=191.61  Aligned_cols=206  Identities=27%  Similarity=0.476  Sum_probs=167.1

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee---------------------------------
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW---------------------------------   99 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------------------------------   99 (290)
                      ..++++.+.+|.+.|.+++|+|   .+|++|+.|+.+++|+......                                 
T Consensus        46 ~~~~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  122 (342)
T d2ovrb2          46 TGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW  122 (342)
T ss_dssp             TCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred             CCCEEEEEeCCCCCEEEEEeCC---CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEe
Confidence            4567899999999999999987   3888999999999998653221                                 


Q ss_pred             -----------------------------------------------eeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910          100 -----------------------------------------------ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus       100 -----------------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                                                                     +..+.+|...+..  +.+++.+|++++.||.|+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~  200 (342)
T d2ovrb2         123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIR  200 (342)
T ss_dssp             ESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEE
T ss_pred             ecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEE
Confidence                                                           1111223333333  344788999999999999


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec---CCCCeEEEEEcCCCCEEEEE
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG---HGSSVTCGDFTPDGKTICTG  209 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~  209 (290)
                      +|++..++.+..+..|...+.++.++  +++|++++.||.|++|++...+....+..   |...+.++.++  ++++++|
T Consensus       201 ~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~  276 (342)
T d2ovrb2         201 VWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITS  276 (342)
T ss_dssp             EEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred             EeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEE
Confidence            99999999999999999999988876  46999999999999999998887777654   55667777765  5699999


Q ss_pred             eCCCeEEEEcCCCCeeeEEEeCC--CCcccCeEEEEEcCCCCEEEEEeCCCc----EEEEEcCC
Q 022910          210 SDDATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTISADSTLALSGSKDGS----VHMVNITT  267 (290)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~~wd~~~  267 (290)
                      +.||.|++||+++++.++.+...  ..|...|++++|+|++.+|++|+.||+    |++||+..
T Consensus       277 s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             cCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999999999999988877532  236678999999999999999999985    99999863

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.7e-27  Score=198.90  Aligned_cols=187  Identities=17%  Similarity=0.312  Sum_probs=149.2

Q ss_pred             cCCcCEEEEEECCCC----CcEEEEecCCCcEEEEEccCCe------------------eeeeeccccCCEEEEEECCCC
Q 022910           62 GHSDEVYSVACSPTD----ATLVATGGGDDKGFFWRINQGD------------------WASEIQGHKDSVSSLAFSMDG  119 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~------------------~~~~~~~~~~~i~~~~~~~~~  119 (290)
                      .+...+..++|.+..    ..++++++.||.+++|++....                  .......+...+.+++|+|++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  196 (393)
T d1sq9a_         117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG  196 (393)
T ss_dssp             GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred             cCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC
Confidence            456678888887732    4678899999999999985321                  111122355668999999987


Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEE------ecCCCCEEEEEEcCCCCEEEEeeCCC---eEEEEECCcccEEEeee--
Q 022910          120 QLLASGGLDGLVQIWDPSSGNLKCTL------EGPGGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAAYLNMFS--  188 (290)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~i~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~--  188 (290)
                       +|++|+.||+|+|||+.+++++..+      .+|..+|++++|+|++++|++|+.|+   .|++||+++++.+..+.  
T Consensus       197 -~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~  275 (393)
T d1sq9a_         197 -LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  275 (393)
T ss_dssp             -EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             -EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc
Confidence             8999999999999999999877654      45788999999999999999999886   59999999988777653  


Q ss_pred             -----------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeE----EEEEcCCCCEEE
Q 022910          189 -----------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT----CLTISADSTLAL  252 (290)
Q Consensus       189 -----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~  252 (290)
                                 +|...|++++|+|++++|++++.|++|++||+.+++++.++.+|   ...|.    .++|+|++..++
T Consensus       276 ~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH---~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         276 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH---CDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC---GGGCSSGGGCCCBCTTSCBCS
T ss_pred             cccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCc---CCcccCCccEEEECCCCCEEE
Confidence                       68999999999999999999999999999999999999999874   33332    345555555444

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.1e-26  Score=190.55  Aligned_cols=217  Identities=12%  Similarity=0.060  Sum_probs=175.6

Q ss_pred             cCCcCEEEEEECCCCCcEEEEec-CC-CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910           62 GHSDEVYSVACSPTDATLVATGG-GD-DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~-~d-g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      +|...|.+++|+| ++++|++++ .+ ..|++|++.+++.. .+..|...|.+++|+|++++|++++.++.+++|++.++
T Consensus        40 ~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          40 PEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             SCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             cCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceecccccccccccccc
Confidence            6999999999999 666665544 33 37999999887655 56679999999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCEEEEEEcCCCCEEEEee----------CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910          140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGS----------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (290)
Q Consensus       140 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  209 (290)
                      +....+..+...+.+++|+|++++|+.+.          .++.+++|++.+++..... .+...+..++|+|+|++|+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~  196 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYL  196 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEE
T ss_pred             ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEEE
Confidence            99999998988999999999999998653          3457999999987755444 467788999999999999999


Q ss_pred             eCCCeEEEEcCCCCee-------eEEEe----------------------------------------------CC----
Q 022910          210 SDDATLRVWNPKSGEN-------IHVIR----------------------------------------------GH----  232 (290)
Q Consensus       210 ~~dg~i~i~d~~~~~~-------~~~~~----------------------------------------------~~----  232 (290)
                      +.++.+++|+......       ...+.                                              ..    
T Consensus       197 s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (360)
T d1k32a3         197 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI  276 (360)
T ss_dssp             ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE
T ss_pred             eCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCc
Confidence            9999999887543210       00000                                              00    


Q ss_pred             ----------------------------------CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910          233 ----------------------------------PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       233 ----------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  278 (290)
                                                        ..+...|..++|+|||++|++++.||.|++||+.+++...++..+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~  356 (360)
T d1k32a3         277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDK  356 (360)
T ss_dssp             EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCS
T ss_pred             eEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEecc
Confidence                                              0023457889999999999999999999999999999888887766


Q ss_pred             CcE
Q 022910          279 DSI  281 (290)
Q Consensus       279 ~~v  281 (290)
                      .|+
T Consensus       357 ~~~  359 (360)
T d1k32a3         357 RPL  359 (360)
T ss_dssp             SCE
T ss_pred             ccc
Confidence            654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.1e-27  Score=188.57  Aligned_cols=198  Identities=17%  Similarity=0.229  Sum_probs=154.0

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe----------------------------------eeeeec
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----------------------------------WASEIQ  104 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------------------------------~~~~~~  104 (290)
                      ...+|...|.++++++ +. .+++++.|+++++|++...+                                  .+..+.
T Consensus        41 ~~~~h~~~V~~~~~~~-~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (287)
T d1pgua2          41 MHQDHSNLIVSLDNSK-AQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR  118 (287)
T ss_dssp             EECCCCSCEEEEECCS-TT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCCCCCCCEEEEEecC-CC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc
Confidence            3568999999999987 44 46788889999999865321                                  111111


Q ss_pred             cccCCEEEEEECCCCCEEEEEeCCC-cEEEEcCCCCceEEEEe-cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc
Q 022910          105 GHKDSVSSLAFSMDGQLLASGGLDG-LVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA  182 (290)
Q Consensus       105 ~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~  182 (290)
                       +..+  ..+++++++.+++++.++ .+++|++...+....+. .+..++++++|+|++.+|++|+.+|.|++||+.+++
T Consensus       119 -~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~  195 (287)
T d1pgua2         119 -LNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE  195 (287)
T ss_dssp             -CSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             -ccce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccc
Confidence             1122  334566778888877765 79999998776655554 366789999999999999999999999999999887


Q ss_pred             EEE-eeecCCCCeEEEEEcCC----------CCEEEEEeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCE
Q 022910          183 YLN-MFSGHGSSVTCGDFTPD----------GKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTL  250 (290)
Q Consensus       183 ~~~-~~~~~~~~i~~~~~~~~----------~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (290)
                      ... .+..|..+|.+++|+|.          +.+|++|+.|+.|++||++++. .+..+.+   |...|++++|+|++ .
T Consensus       196 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~---h~~~V~~v~~~~~~-~  271 (287)
T d1pgua2         196 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA---HKDGVNNLLWETPS-T  271 (287)
T ss_dssp             EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS---STTCEEEEEEEETT-E
T ss_pred             cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCC---CCCCeEEEEECCCC-E
Confidence            654 46789999999999874          4689999999999999997744 4444444   88999999999986 5


Q ss_pred             EEEEeCCCcEEEEEc
Q 022910          251 ALSGSKDGSVHMVNI  265 (290)
Q Consensus       251 l~~~~~dg~i~~wd~  265 (290)
                      |++++.||.|++|++
T Consensus       272 l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         272 LVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEEECCCeEEEEEE
Confidence            888999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-26  Score=183.08  Aligned_cols=198  Identities=23%  Similarity=0.503  Sum_probs=163.3

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee------------------------------
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE------------------------------  102 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~------------------------------  102 (290)
                      ..++++.+++|.++|++++|++   ++|++|+.|+.|++|++..+.....                              
T Consensus        44 ~~~~~~~l~~H~~~V~~v~~~~---~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (293)
T d1p22a2          44 TLECKRILTGHTGSVLCLQYDE---RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW  120 (293)
T ss_dssp             SCCEEEEECCCSSCEEEEECCS---SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred             CCcEEEEEecCCCCEeeeeccc---ceeecccccccccccccccccccccccccccccccccccccceeecccccceeEe
Confidence            4678899999999999999854   6899999999999999875432221                              


Q ss_pred             -------------eccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC
Q 022910          103 -------------IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE  169 (290)
Q Consensus       103 -------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  169 (290)
                                   +..|...+.++.+.  ...+++++.|+.|++|++.+++.+..+.++...+..+.++  +.++++++.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~  196 (293)
T d1p22a2         121 DMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS  196 (293)
T ss_dssp             ECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET
T ss_pred             eccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC
Confidence                         12345566666653  4578889999999999999999999999998888888775  568999999


Q ss_pred             CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC---------CeeeEEEeCCCCcccCeE
Q 022910          170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---------GENIHVIRGHPYHTEGLT  240 (290)
Q Consensus       170 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~v~  240 (290)
                      ||.|++||+++.+.+..+.++...+..  +++++.+|++++.||.|++||+.+         ...+..+..   |...|+
T Consensus       197 dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---H~~~V~  271 (293)
T d1p22a2         197 DNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE---HSGRVF  271 (293)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC---CSSCCC
T ss_pred             CCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecC---CCCCEE
Confidence            999999999999999999988888875  456788999999999999999643         234455655   788899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEE
Q 022910          241 CLTISADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       241 ~~~~~~~~~~l~~~~~dg~i~~wd  264 (290)
                      +++|+  +.+|++|+.||+|++||
T Consensus       272 ~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         272 RLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEEEc--CCEEEEEecCCEEEEeC
Confidence            99995  67899999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=2.9e-27  Score=194.09  Aligned_cols=213  Identities=11%  Similarity=0.039  Sum_probs=173.0

Q ss_pred             EEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC--cEEEEcCCCCceEEEEe
Q 022910           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTLE  146 (290)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~  146 (290)
                      .-.|+|.+++++|+++ .|.|++|++..+..+. + .|...|.+++|+|+|++|++++.+.  .|++|++.+++.. .+.
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~   82 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE   82 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence            4579997778888876 5899999998877655 3 5899999999999999998876553  7999999887755 566


Q ss_pred             cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe----------CCCeEE
Q 022910          147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS----------DDATLR  216 (290)
Q Consensus       147 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~  216 (290)
                      .|...+.+++|+|++++|++++.++.+++|++.+++....+..+...+.+++|+|+|++|+.+.          .++.++
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence            7888999999999999999999999999999999999999998999999999999999998653          345799


Q ss_pred             EEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE-------EEEEccCCCcEEEEEEecC
Q 022910          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-------VSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-------~~~~~~~~~~v~~i~~s~d  289 (290)
                      +|++.+++......    +...+..++|+|+|++|++++.++.+++|+......       +..+..|...+..+.|+|+
T Consensus       163 v~d~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  238 (360)
T d1k32a3         163 VYDMEGRKIFAATT----ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR  238 (360)
T ss_dssp             EEETTTTEEEECSC----SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred             eeccccCceeeecc----cccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCC
Confidence            99999887654433    567788999999999999999999999999765432       3333444444444444443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.8e-25  Score=182.25  Aligned_cols=200  Identities=20%  Similarity=0.343  Sum_probs=165.3

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      .........|...|.+...   ++.+++++..|+.|++|++.+++.+....++...+.++.|+|++.++++++.|+.|++
T Consensus       151 ~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  227 (355)
T d1nexb2         151 PYFVGVLRGHMASVRTVSG---HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI  227 (355)
T ss_dssp             TTEEEEEECCSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cceeeeeeecccccccccc---ccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEe
Confidence            4445666677777776655   4478899999999999999999999999989999999999999999999999999999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEE-EEcCCCCEEEEEeCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG-DFTPDGKTICTGSDD  212 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~d  212 (290)
                      |++.++..+..+.+|...|.+++++  +++|++|+.||.|++||+++......  .|...+.++ .+++++.+|++| .|
T Consensus       228 ~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~g-~d  302 (355)
T d1nexb2         228 WDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNILVSG-SE  302 (355)
T ss_dssp             EETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEECSSEEEEE-ET
T ss_pred             eeccccccccccccccccccccccc--cceeeeeecccccccccccccceecc--cccCCceEEEEEcCCCCEEEEE-eC
Confidence            9999999999999999999999996  46999999999999999988765443  445555554 456677766665 58


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd  264 (290)
                      |.|++||+++++.+....  ..|...|.+++|+|+ .++++++.||+++||-
T Consensus       303 ~~i~vwd~~tg~~~~~~~--~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         303 NQFNIYNLRSGKLVHANI--LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             TEEEEEETTTCCBCCSCT--TTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             CEEEEEECCCCCEEEEEe--cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            999999999998764322  227788999999986 5788889999876654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.2e-24  Score=183.44  Aligned_cols=212  Identities=10%  Similarity=0.031  Sum_probs=158.9

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE--e---cCCCCE
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL--E---GPGGGV  152 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~---~~~~~i  152 (290)
                      .++++.+.||+|+|||+.+++.+.++..|. .+..++|+|||++|++++.|++|++||+.+++.....  .   .|.+.+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            356778899999999999999999998764 5899999999999999999999999999998765433  2   344445


Q ss_pred             EEEEEcCCCCEEEEe-eCCCeEEEEECCcccEEEeee-------------------------------------------
Q 022910          153 EWVSWHPRGHIVLAG-SEDSTVWMWNADRAAYLNMFS-------------------------------------------  188 (290)
Q Consensus       153 ~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-------------------------------------------  188 (290)
                      .+++|+|+|++++++ ..++.+++||..++.++..+.                                           
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~  191 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN  191 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            667778899987555 578999999988765432221                                           


Q ss_pred             ------------cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEcCCCCeeeEEEeC------------------------
Q 022910          189 ------------GHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVIRG------------------------  231 (290)
Q Consensus       189 ------------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~------------------------  231 (290)
                                  .+...+..+.|+|++++++++. .+..+.+++..+++.......                        
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (426)
T d1hzua2         192 YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS  271 (426)
T ss_dssp             CSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEE
T ss_pred             eccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEec
Confidence                        1234456788999998877665 455677777766554332210                        


Q ss_pred             ---------------------------CCCcccCeEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCcEEEEEc--
Q 022910          232 ---------------------------HPYHTEGLTCLTISADSTLALS-------GSKDGSVHMVNITTGKVVSSLV--  275 (290)
Q Consensus       232 ---------------------------~~~~~~~v~~~~~~~~~~~l~~-------~~~dg~i~~wd~~~~~~~~~~~--  275 (290)
                                                 ...|...+..++|+|++++|++       ++.+++|++||+.++++..++.  
T Consensus       272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~  351 (426)
T d1hzua2         272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI  351 (426)
T ss_dssp             CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred             cCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEecc
Confidence                                       0114566888999999999995       4457899999999988766542  


Q ss_pred             -------cCCCcEEEEEEecCC
Q 022910          276 -------SHTDSIECIGFSRSE  290 (290)
Q Consensus       276 -------~~~~~v~~i~~s~d~  290 (290)
                             .|...|.+++|||||
T Consensus       352 ~~~~~~~~~~~rv~~~~fSpDG  373 (426)
T d1hzua2         352 AEWADLGEGAKRVVQPEYNKRG  373 (426)
T ss_dssp             HHHHCCCSSCCCEEEEEECSSS
T ss_pred             chhcccCCCCccEEEEEECCCC
Confidence                   345679999999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=2.3e-24  Score=181.66  Aligned_cols=224  Identities=10%  Similarity=0.038  Sum_probs=165.6

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee--e---ccccCCEEEEEECCCCCEEEEE-e
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--I---QGHKDSVSSLAFSMDGQLLASG-G  126 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~---~~~~~~i~~~~~~~~~~~l~~~-~  126 (290)
                      ..+.+..+..|. .+..++|+| ++++|++++.|++|++||+.+++....  +   .+|.+.+.+++|+|+|++++++ .
T Consensus        51 t~~~~~~l~~g~-~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~  128 (426)
T d1hzua2          51 SKKIVKVIDTGY-AVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY  128 (426)
T ss_dssp             TCSEEEEEECCS-SEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             CCcEEEEEeCCC-CeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec
Confidence            466778888875 689999999 778888999999999999998764432  2   3566667778888999987554 5


Q ss_pred             CCCcEEEEcCCCCceEEEEe-------------------------------------------------------cCCCC
Q 022910          127 LDGLVQIWDPSSGNLKCTLE-------------------------------------------------------GPGGG  151 (290)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~-------------------------------------------------------~~~~~  151 (290)
                      .++.+++||..++.++..+.                                                       .+...
T Consensus       129 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  208 (426)
T d1hzua2         129 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF  208 (426)
T ss_dssp             ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSS
T ss_pred             CCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCc
Confidence            78999999988765433221                                                       12234


Q ss_pred             EEEEEEcCCCCEEEEeeC-CCeEEEEECCccc------------------------------------------------
Q 022910          152 VEWVSWHPRGHIVLAGSE-DSTVWMWNADRAA------------------------------------------------  182 (290)
Q Consensus       152 i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~------------------------------------------------  182 (290)
                      +..+.|+|++++++++.. ...+.+++..+++                                                
T Consensus       209 ~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~  288 (426)
T d1hzua2         209 LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH  288 (426)
T ss_dssp             EEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTC
T ss_pred             cEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccc
Confidence            567888888887776653 3445566554332                                                


Q ss_pred             ------EEEeeecCCCCeEEEEEcCCCCEEEE-------EeCCCeEEEEcCCCCeeeEEEeC------CCCcccCeEEEE
Q 022910          183 ------YLNMFSGHGSSVTCGDFTPDGKTICT-------GSDDATLRVWNPKSGENIHVIRG------HPYHTEGLTCLT  243 (290)
Q Consensus       183 ------~~~~~~~~~~~i~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~v~~~~  243 (290)
                            ....+.+|...+..++|+|++++|++       ++.+++|+|||+.+++....+..      +..+...+.+++
T Consensus       289 ~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~  368 (426)
T d1hzua2         289 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE  368 (426)
T ss_dssp             TTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEE
T ss_pred             ccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEE
Confidence                  23345567778899999999999995       44578999999999887665532      223566799999


Q ss_pred             EcCCCCEEEEE-----eCCCcEEEEEcCCCcEEEEEccCC
Q 022910          244 ISADSTLALSG-----SKDGSVHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       244 ~~~~~~~l~~~-----~~dg~i~~wd~~~~~~~~~~~~~~  278 (290)
                      |+|||++++.+     +.+|.|++||.+++++...+.++.
T Consensus       369 fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~  408 (426)
T d1hzua2         369 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR  408 (426)
T ss_dssp             ECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             ECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC
Confidence            99999977543     357889999999999999988753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.9e-25  Score=177.88  Aligned_cols=206  Identities=10%  Similarity=0.077  Sum_probs=151.6

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccC-CEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD-SVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      .....+|..+|.+++|+|.++.+|++|+.||.|++|++...........+.. ......+.++...+++++.++.+++||
T Consensus        49 ~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd  128 (342)
T d1yfqa_          49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID  128 (342)
T ss_dssp             EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEEC
T ss_pred             EEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceee
Confidence            3444579999999999997788999999999999999998776666554443 344555667888999999999999999


Q ss_pred             CCCCceEEEE----ecC--CCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE-------------------------
Q 022910          136 PSSGNLKCTL----EGP--GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-------------------------  184 (290)
Q Consensus       136 ~~~~~~~~~~----~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------  184 (290)
                      ++++......    ..+  ......+.+.+.+..+++++.++.|++|+++.....                         
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (342)
T d1yfqa_         129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG  208 (342)
T ss_dssp             HHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred             ccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCE
Confidence            8654322211    111  123344555666777777777777777776532110                         


Q ss_pred             ----------E--------------------------eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEE
Q 022910          185 ----------N--------------------------MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV  228 (290)
Q Consensus       185 ----------~--------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  228 (290)
                                .                          ....|...+.+++|+|++++|++|+.||.|++||+.+++.+..
T Consensus       209 ~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~  288 (342)
T d1yfqa_         209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN  288 (342)
T ss_dssp             EEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEE
Confidence                      0                          0012445688999999999999999999999999999998877


Q ss_pred             EeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910          229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~  266 (290)
                      +..    ...+..++|+|++++|++++.|+.+++|...
T Consensus       289 ~~~----~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         289 FAK----FNEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CCC----CSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             ecC----CCCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            753    2345667888899999999999988888653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=8e-23  Score=165.64  Aligned_cols=227  Identities=13%  Similarity=0.112  Sum_probs=173.7

Q ss_pred             Cceeeecc--CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccC-----CEEEEEECCCCCEEEEEe-
Q 022910           55 DSTHIFSG--HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD-----SVSSLAFSMDGQLLASGG-  126 (290)
Q Consensus        55 ~~~~~~~~--h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~-  126 (290)
                      +.+..+..  +...+.+++|+|++..++++++.++.|.+||+.+++.+..+..+..     .+..++|+|++++++++. 
T Consensus        22 ~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeec
Confidence            44555543  3456789999995445557788899999999999998887765433     345789999999988875 


Q ss_pred             -----------CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee--------
Q 022910          127 -----------LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF--------  187 (290)
Q Consensus       127 -----------~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------  187 (290)
                                 .++.+.+||..+++....+..+ ..+..++|+|+++++++++.  .+.+||..+++....+        
T Consensus       102 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~  178 (337)
T d1pbyb_         102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAE  178 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTT
T ss_pred             CCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCcccc
Confidence                       3578999999999988888754 45888999999999998864  4667887655432221        


Q ss_pred             ----------------------------------------------------------ecCCCCeEEEEEcCCCCEEEEE
Q 022910          188 ----------------------------------------------------------SGHGSSVTCGDFTPDGKTICTG  209 (290)
Q Consensus       188 ----------------------------------------------------------~~~~~~i~~~~~~~~~~~l~~~  209 (290)
                                                                                ..+...+..+.++|++.+++++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (337)
T d1pbyb_         179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA  258 (337)
T ss_dssp             TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             ceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc
Confidence                                                                      1233445667778888877765


Q ss_pred             eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC----CcEEEEE
Q 022910          210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT----DSIECIG  285 (290)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----~~v~~i~  285 (290)
                        ++.|++||+.+++.+..+.    +...+.+++|+|+|++|++++.++.|++||+.+++.+.+++.+.    ...+-..
T Consensus       259 --~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g~~~~~~~~~~~  332 (337)
T d1pbyb_         259 --YNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRL  332 (337)
T ss_dssp             --ESEEEEEETTTTEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGGCCCBTCCCEE
T ss_pred             --cccEEEEECCCCcEEEEEc----CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCCCCccceeeeeE
Confidence              4889999999999988886    45678899999999999999999999999999999999987432    2334445


Q ss_pred             EecCC
Q 022910          286 FSRSE  290 (290)
Q Consensus       286 ~s~d~  290 (290)
                      |++|+
T Consensus       333 ~~~~~  337 (337)
T d1pbyb_         333 FTRDE  337 (337)
T ss_dssp             EECCC
T ss_pred             EcCCC
Confidence            77764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=3.9e-21  Score=153.27  Aligned_cols=227  Identities=15%  Similarity=0.166  Sum_probs=181.6

Q ss_pred             CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEE-EEeCCCcEEE
Q 022910           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQI  133 (290)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i  133 (290)
                      +.++.+... ..+..++|+|++..++++++.++.|++||+.+++.+..+..+. .+..+.|++++.+++ ++..++.+.+
T Consensus        23 ~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (301)
T d1l0qa2          23 KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSV  100 (301)
T ss_dssp             EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeee
Confidence            445555443 4578999999555566788889999999999999999888665 468899999998655 4556789999


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEE-eeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      |+..+++....+..+. ...++.|+|++..++. +..++.+.+|+..+...+..+..+ ..+..++++|++..+++++.+
T Consensus       101 ~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  178 (301)
T d1l0qa2         101 IDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFD  178 (301)
T ss_dssp             EETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT
T ss_pred             cccccceeeeeccccc-cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccc
Confidence            9999998888887554 5788999999987654 556788999999999888877744 567889999999988877654


Q ss_pred             -CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910          213 -ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVVSSLVSHTDSIECIGFSR  288 (290)
Q Consensus       213 -g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~  288 (290)
                       +.+.+|+.........+.    ....+..++|++++..+++++.   ++.|++||+.+++++..+..+ ..+++++|+|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~sp  253 (301)
T d1l0qa2         179 SMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTP  253 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECT
T ss_pred             ccccccccccceeeeeccc----ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeC
Confidence             677788888777766666    3456788999999998876643   468999999999999988764 5689999999


Q ss_pred             CC
Q 022910          289 SE  290 (290)
Q Consensus       289 d~  290 (290)
                      ||
T Consensus       254 dg  255 (301)
T d1l0qa2         254 DG  255 (301)
T ss_dssp             TS
T ss_pred             CC
Confidence            97

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1.1e-22  Score=165.46  Aligned_cols=204  Identities=10%  Similarity=0.017  Sum_probs=154.3

Q ss_pred             EEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEE-EEeCCCcEEEEcCCCCceEEEEec
Q 022910           70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCTLEG  147 (290)
Q Consensus        70 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~  147 (290)
                      ++|++ ++.+|++++.+++|.+||+.+++.+.++. .+...+.+++|+|+|++++ +++.++.|++||+.+++.+..+..
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            46888 88999999999999999999999998876 4566778999999999874 556789999999999988877654


Q ss_pred             CCC------CEEEEEEcCCCCEEEEee------------CCCeEEEEECCcc----------------------------
Q 022910          148 PGG------GVEWVSWHPRGHIVLAGS------------EDSTVWMWNADRA----------------------------  181 (290)
Q Consensus       148 ~~~------~i~~i~~~~~~~~l~~~~------------~dg~i~i~d~~~~----------------------------  181 (290)
                      ...      .+..++|+|+|+++++++            .++.+.+|+..++                            
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            321      345688888888777654            2445555554432                            


Q ss_pred             -------------cEEEee-------------------------------------------------------------
Q 022910          182 -------------AYLNMF-------------------------------------------------------------  187 (290)
Q Consensus       182 -------------~~~~~~-------------------------------------------------------------  187 (290)
                                   +.+..+                                                             
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         161 AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             eCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence                         111111                                                             


Q ss_pred             -------ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 022910          188 -------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV  260 (290)
Q Consensus       188 -------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  260 (290)
                             ..+...+..+.+++++.+++... .+.|++||+.+++.+..+.    +...+.+++|+|||++|++++.||.|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~----~~~~~~~va~s~DG~~l~v~~~d~~v  315 (346)
T d1jmxb_         241 KTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDL  315 (346)
T ss_dssp             CEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred             ceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc----CCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence                   01223344556666666665554 4679999999999888776    34568899999999999999999999


Q ss_pred             EEEEcCCCcEEEEEccCCC
Q 022910          261 HMVNITTGKVVSSLVSHTD  279 (290)
Q Consensus       261 ~~wd~~~~~~~~~~~~~~~  279 (290)
                      ++||+.+++.+.++..+.+
T Consensus       316 ~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         316 AVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             EEEETTTTEEEEEEECSSS
T ss_pred             EEEECccCCEEEEEECCCC
Confidence            9999999999999986554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.8e-21  Score=157.61  Aligned_cols=207  Identities=11%  Similarity=0.079  Sum_probs=164.1

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeeccc--cCCEEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceEEEEecCCC----
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQGH--KDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGPGG----  150 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~----  150 (290)
                      .+|++++.|++|++||+.+++.+..+..+  ...+.+++|+|+|+++ ++++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            57899999999999999999999888643  4557899999999987 4567799999999999999888765533    


Q ss_pred             -CEEEEEEcCCCCEEEEee------------CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 022910          151 -GVEWVSWHPRGHIVLAGS------------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV  217 (290)
Q Consensus       151 -~i~~i~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  217 (290)
                       .+..++|+|++++++++.            .+..+.+||..+++....+.. ...+..++|+|+++++++++.  .+.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--Ccce
Confidence             345789999999998876            357899999999988888774 456788999999999998864  4677


Q ss_pred             EcCCCCeeeEEEeCCC---------------------------------------------------------------C
Q 022910          218 WNPKSGENIHVIRGHP---------------------------------------------------------------Y  234 (290)
Q Consensus       218 ~d~~~~~~~~~~~~~~---------------------------------------------------------------~  234 (290)
                      ||..+++....+....                                                               .
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence            8887766554432110                                                               0


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      +...+..+.++|++.+++++  ++.|++||+.+++.+..+. +...+.+++|+|||
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG  291 (337)
T d1pbyb_         239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDG  291 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTS
T ss_pred             CCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCC
Confidence            22345566777888887765  5799999999999999886 46778999999997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=1.8e-20  Score=149.41  Aligned_cols=215  Identities=13%  Similarity=0.123  Sum_probs=174.0

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEE-EEeCCCcEE
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQ  132 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~  132 (290)
                      ...+..+..|. .+..++|++++..+++++..++.+.+|+..+++....+.. .....++.|+|++..++ ++..++.+.
T Consensus        64 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~  141 (301)
T d1l0qa2          64 NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVS  141 (301)
T ss_dssp             TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             Cceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeecccccee
Confidence            44566666665 4688999996767788888889999999999988888874 45678899999999765 455688899


Q ss_pred             EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC-CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC
Q 022910          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (290)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  211 (290)
                      +|+..+.+.+..+..+. .+..++++|++..+++++.+ +.+.+|+........... ....+..++|+++++.++++..
T Consensus       142 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~  219 (301)
T d1l0qa2         142 VINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNV  219 (301)
T ss_dssp             EEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEE
T ss_pred             eeeccccceeeecccCC-CceEEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccc
Confidence            99999999888877554 58899999999988877765 667788887777666665 3456788999999998876543


Q ss_pred             ---CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          212 ---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       212 ---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                         ++.|++||+.+++.+..+..    ...+.+++|+|+|++| ++++.++.|++||+.+++++.++..
T Consensus       220 ~~~~~~v~v~D~~t~~~~~~~~~----~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         220 DKYFNTVSMIDTGTNKITARIPV----GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             CSSCCEEEEEETTTTEEEEEEEC----CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             cceeeeeeeeecCCCeEEEEEcC----CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence               46899999999998887763    4568999999999977 5677799999999999999999874

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=2.6e-21  Score=162.92  Aligned_cols=195  Identities=9%  Similarity=-0.038  Sum_probs=154.9

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE--EEEe---cCCCCE
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--CTLE---GPGGGV  152 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~---~~~~~i  152 (290)
                      .++++.+.+|+|.|||..+++.+..+..+. .+..++|+|||+++++++.|+.|++||+.+++..  ..++   .|.+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            446889999999999999999999998764 6899999999999999999999999999887643  3333   333445


Q ss_pred             EEEEEcCCCCEE-EEeeCCCeEEEEECCcccEEEeeec-----------CCCCeEEEEEcCCCCEEE-EEeCCCeEEEEc
Q 022910          153 EWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSG-----------HGSSVTCGDFTPDGKTIC-TGSDDATLRVWN  219 (290)
Q Consensus       153 ~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d  219 (290)
                      .+..|+|+|++| ++++.++.|++||..+++++..+..           +......+.++|++..++ +...++.|.+|+
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence            556678899976 6778899999999999988877653           344567789999988765 566689999999


Q ss_pred             CCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEEc
Q 022910          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~  275 (290)
                      ..+.+........  +...+..++|+|+|+++++++. ++.|.+++..+++.+..+.
T Consensus       192 ~~~~~~~~~~~i~--~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         192 YTDLNNLKTTEIS--AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             TTCSSEEEEEEEE--CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCcceEEEEc--ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            9887654433221  4567889999999998777765 5589999999988877764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=4.5e-21  Score=161.43  Aligned_cols=237  Identities=11%  Similarity=-0.010  Sum_probs=170.3

Q ss_pred             CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee--eeee---ccccCCEEEEEECCCCCEE-EEE
Q 022910           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEI---QGHKDSVSSLAFSMDGQLL-ASG  125 (290)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~---~~~~~~i~~~~~~~~~~~l-~~~  125 (290)
                      ...+.+..+..|. .+..++|+| +++++++++.|+.|++||+.+++.  ...+   ..|.+.+.+..|+|||++| +++
T Consensus        50 ~t~~v~~~~~~g~-~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~  127 (432)
T d1qksa2          50 STYEIKTVLDTGY-AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA  127 (432)
T ss_dssp             TTCCEEEEEECSS-CEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCcEEEEEeCCC-CeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEc
Confidence            3567788888774 699999999 788889999999999999988653  2222   3466666777788999976 677


Q ss_pred             eCCCcEEEEcCCCCceEEEEec-----------CCCCEEEEEEcCCCCEEE-EeeCCCeEEEEECCcccEEEeee-cCCC
Q 022910          126 GLDGLVQIWDPSSGNLKCTLEG-----------PGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAYLNMFS-GHGS  192 (290)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~-----------~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~-~~~~  192 (290)
                      +.++.|++||..+++++..+..           +......+.++|++..++ +...++.|.+|+..+.+...... .+..
T Consensus       128 ~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~  207 (432)
T d1qksa2         128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER  207 (432)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred             CCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccC
Confidence            8899999999999998877654           234567789999988654 55667999999998876544332 3556


Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCeEEEEcCCCCeeeEEEeCCC--------------------------------------
Q 022910          193 SVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIHVIRGHP--------------------------------------  233 (290)
Q Consensus       193 ~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~--------------------------------------  233 (290)
                      .+..++|+|+|+++++++. +..|.++|..+++....+....                                      
T Consensus       208 ~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         208 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             ccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccc
Confidence            7899999999998877665 5578889988766544332110                                      


Q ss_pred             ---CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc------------------------EEEE--------EccCC
Q 022910          234 ---YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK------------------------VVSS--------LVSHT  278 (290)
Q Consensus       234 ---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~------------------------~~~~--------~~~~~  278 (290)
                         .+...+....++|++..+++++.++.+++|...+..                        .++.        +..|.
T Consensus       288 ~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~  367 (432)
T d1qksa2         288 GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQ  367 (432)
T ss_dssp             TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSC
T ss_pred             cccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCC
Confidence               122245566677777777777777777777543211                        1111        22456


Q ss_pred             CcEEEEEEecCC
Q 022910          279 DSIECIGFSRSE  290 (290)
Q Consensus       279 ~~v~~i~~s~d~  290 (290)
                      ..|.+++|||||
T Consensus       368 ~~v~~~~fS~DG  379 (432)
T d1qksa2         368 PRVVQGEFNKDG  379 (432)
T ss_dssp             CEEEEEEECTTS
T ss_pred             CcEEEeEECCCC
Confidence            789999999997

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.86  E-value=5.7e-19  Score=145.21  Aligned_cols=226  Identities=10%  Similarity=0.038  Sum_probs=160.4

Q ss_pred             eeeccCCcCEEEEEECCCCCcEEEEe----cCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe-------
Q 022910           58 HIFSGHSDEVYSVACSPTDATLVATG----GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-------  126 (290)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------  126 (290)
                      .....+..++.+++++|++..++++.    +..+.|.+||..+++.+..+..+..+  .++|+|+|++|++++       
T Consensus        14 ~a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          14 LAAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             hhcccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccc
Confidence            34456888999999999555444432    23467999999999999888766544  799999999998875       


Q ss_pred             ---CCCcEEEEcCCCCceEEEEecCC-----------------------------------------------CCEEEEE
Q 022910          127 ---LDGLVQIWDPSSGNLKCTLEGPG-----------------------------------------------GGVEWVS  156 (290)
Q Consensus       127 ---~dg~i~i~d~~~~~~~~~~~~~~-----------------------------------------------~~i~~i~  156 (290)
                         .++.|.+||+.+++.+..+..+.                                               ....++.
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYH  171 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEE
Confidence               35789999999887654432111                                               1123456


Q ss_pred             EcCCCCE-EEEeeCCCeEEEEECCcccEEEeeec----------------------------------------------
Q 022910          157 WHPRGHI-VLAGSEDSTVWMWNADRAAYLNMFSG----------------------------------------------  189 (290)
Q Consensus       157 ~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------------------------  189 (290)
                      ++|+++. +++.+.++.+.+|+...+........                                              
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  251 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAP  251 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEe
Confidence            6777664 45677889999998765433221100                                              


Q ss_pred             ---C----------CCCeEEEEEcCCCCEE----------EEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC
Q 022910          190 ---H----------GSSVTCGDFTPDGKTI----------CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (290)
Q Consensus       190 ---~----------~~~i~~~~~~~~~~~l----------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (290)
                         .          ......++++|++..+          ++...++.|.+||..+++.+..+.    +...+..++|+|
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~----~~~~~~~~a~sp  327 (373)
T d2madh_         252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS----LGHDVDAISVAQ  327 (373)
T ss_pred             eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec----CCCCeeEEEECC
Confidence               0          0111233445554443          334556788999999998887776    567789999999


Q ss_pred             CCC--EEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          247 DST--LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       247 ~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      ||+  ++++++.|+.|++||+.+++.++++..+....+.|++.++
T Consensus       328 DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         328 DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            998  4467889999999999999999999988888888887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.4e-19  Score=147.85  Aligned_cols=217  Identities=14%  Similarity=0.164  Sum_probs=145.0

Q ss_pred             EEEEECCCCCcEEEEe----cCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe----------CCCcEEE
Q 022910           68 YSVACSPTDATLVATG----GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQI  133 (290)
Q Consensus        68 ~~~~~~~~~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i  133 (290)
                      .-.+.+|++..++++.    .....|.+||..+++.+.++..+..+  .++|+|+|++|++++          .++.|++
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            3345678444444432    34567999999999999888765444  699999999887653          4789999


Q ss_pred             EcCCCCceEEEEecCCC-------CEEEEEEcCCCCEEEEee--CCCeEEEEECCcccEEEeeecCC-------------
Q 022910          134 WDPSSGNLKCTLEGPGG-------GVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHG-------------  191 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~-------~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~-------------  191 (290)
                      ||+.+++.+..+..+..       ....++|+|++++++++.  .+..+.+|+..+++.+..+..+.             
T Consensus        83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d2bbkh_          83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF  162 (355)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred             EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceE
Confidence            99999998887754332       234578999999877764  45678889887765443322110             


Q ss_pred             --------------------------------CCeEEEEEcCCCCEEEEEeCCCeEEEE---------------------
Q 022910          192 --------------------------------SSVTCGDFTPDGKTICTGSDDATLRVW---------------------  218 (290)
Q Consensus       192 --------------------------------~~i~~~~~~~~~~~l~~~~~dg~i~i~---------------------  218 (290)
                                                      ..+....+.+.+..++.++.++.+++|                     
T Consensus       163 ~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (355)
T d2bbkh_         163 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER  242 (355)
T ss_dssp             EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred             EEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceE
Confidence                                            001112223333334444444444444                     


Q ss_pred             -------------------------------------------cCCCCeeeEEEeCCCCcccCeEEEEEcCCCC--EEEE
Q 022910          219 -------------------------------------------NPKSGENIHVIRGHPYHTEGLTCLTISADST--LALS  253 (290)
Q Consensus       219 -------------------------------------------d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~  253 (290)
                                                                 |..+++.+..+.    ....+.+++|+|+|+  ++++
T Consensus       243 ~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~----~~~~~~~~a~spDG~~~l~v~  318 (355)
T d2bbkh_         243 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE----MGHEIDSINVSQDEKPLLYAL  318 (355)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE----EEEEECEEEECCSSSCEEEEE
T ss_pred             eeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec----CCCCEEEEEEcCCCCeEEEEE
Confidence                                                       444444444333    334577899999997  4566


Q ss_pred             EeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          254 GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       254 ~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ++.++.|++||+.+++.++++..+......|.+.++|
T Consensus       319 ~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         319 STGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             ETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             ECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            7789999999999999999998877777777776654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=9.3e-18  Score=135.40  Aligned_cols=226  Identities=11%  Similarity=0.124  Sum_probs=148.2

Q ss_pred             ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec---cccCCEEEEEECCCCCEEEEEeC-CCcEEEEcC
Q 022910           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGGL-DGLVQIWDP  136 (290)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~  136 (290)
                      ..|.+.|.+|+|+|++..+++++..++.|++|++........+.   .+...+..++|+|+|++|++++. ++.|.+|+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            46889999999999544555667778999999998654333222   23445678999999999988875 678999988


Q ss_pred             CCCceEEEE--ecCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCcccEEEe---------------------------
Q 022910          137 SSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNM---------------------------  186 (290)
Q Consensus       137 ~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~---------------------------  186 (290)
                      .........  ..+...+.++.++|+++++++++. ...|.+|+.........                           
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~  192 (333)
T d1ri6a_         113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  192 (333)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             ccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence            766544333  345556888999999998777764 45688887654211000                           


Q ss_pred             --------------------------ee------cCCCCeEEEEEcCCCCEEEE-EeCCCeEEEEcCCCCeeeEEEeCCC
Q 022910          187 --------------------------FS------GHGSSVTCGDFTPDGKTICT-GSDDATLRVWNPKSGENIHVIRGHP  233 (290)
Q Consensus       187 --------------------------~~------~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~  233 (290)
                                                ..      ........++++++++++++ +..++.+.+|++........+....
T Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (333)
T d1ri6a_         193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ  272 (333)
T ss_dssp             EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred             eeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe
Confidence                                      00      01123455678888876654 4456788888776554433333222


Q ss_pred             CcccCeEEEEEcCCCCEEEEEeC-CCcEEEE--EcCCCcE--EEEEccCCCcEEEEEEe
Q 022910          234 YHTEGLTCLTISADSTLALSGSK-DGSVHMV--NITTGKV--VSSLVSHTDSIECIGFS  287 (290)
Q Consensus       234 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w--d~~~~~~--~~~~~~~~~~v~~i~~s  287 (290)
                      .....+..++|+|+|++|++++. ++.|++|  |..+|++  +.++..-.. ..+|.++
T Consensus       273 ~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~g~~-p~~v~~~  330 (333)
T d1ri6a_         273 PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQG-PMWVVVN  330 (333)
T ss_dssp             ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSS-CCEEEEE
T ss_pred             CCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEeccCCCC-CcEEEEE
Confidence            23456778999999999887765 5889998  5567754  444554233 3344443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.2e-17  Score=134.78  Aligned_cols=213  Identities=12%  Similarity=0.113  Sum_probs=144.3

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeee--ccccCCEEEEEECCCCCEEEEEe-CCCcEEEEcCCCCceEEEE---ecCCCC
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSGNLKCTL---EGPGGG  151 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~---~~~~~~  151 (290)
                      ..+++++.+++|++|++.....+..+  ..|.+.+..|+|+|+|++|++++ .++.|++|++........+   ......
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            45678889999999999765433322  24778899999999999886555 5899999999766433322   223445


Q ss_pred             EEEEEEcCCCCEEEEeeC-CCeEEEEECCcccEEE--eeecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEcCCCCeeeE
Q 022910          152 VEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIH  227 (290)
Q Consensus       152 i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~  227 (290)
                      +..++|+|+|++|++++. ++.|.+|+........  ....+...+.++.++|+++++++++. +..|.+|+........
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            778999999999998875 6789999877654433  33345667788899999988877664 4567777765432111


Q ss_pred             EE-----e------------------------------------------------C---CCCcccCeEEEEEcCCCCEE
Q 022910          228 VI-----R------------------------------------------------G---HPYHTEGLTCLTISADSTLA  251 (290)
Q Consensus       228 ~~-----~------------------------------------------------~---~~~~~~~v~~~~~~~~~~~l  251 (290)
                      ..     .                                                .   ..........++++++++++
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~  244 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  244 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence            00     0                                                0   00012234567888988866


Q ss_pred             EEE-eCCCcEEEEEcCCCcEEE---EEccCCCcEEEEEEecCC
Q 022910          252 LSG-SKDGSVHMVNITTGKVVS---SLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       252 ~~~-~~dg~i~~wd~~~~~~~~---~~~~~~~~v~~i~~s~d~  290 (290)
                      ++. ..++.+.+|++.......   ........+++++|+|||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDG  287 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSG  287 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTS
T ss_pred             eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCC
Confidence            655 456789999887543322   223345678899999997

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=2.7e-16  Score=129.14  Aligned_cols=217  Identities=10%  Similarity=-0.014  Sum_probs=148.0

Q ss_pred             CCcCEEEEEECCCCCcE--EEEecCCCc--EEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe----------CC
Q 022910           63 HSDEVYSVACSPTDATL--VATGGGDDK--GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LD  128 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~--l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d  128 (290)
                      +.++...++..+++...  .+....++.  +.+||..+++.+..+..+..+  .++|+|+|++|++.+          .+
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            34444555566633332  223444554  667799999988888766654  589999999888764          36


Q ss_pred             CcEEEEcCCCCceEEEEecCCC-------CEEEEEEcCCCCEEEEee-CCCeEEEEECCcccEEEeeecCC---------
Q 022910          129 GLVQIWDPSSGNLKCTLEGPGG-------GVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHG---------  191 (290)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~-------~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~---------  191 (290)
                      +.|.+||..+++++..+..+..       ....++|+|+|++|+++. .++.+.+||+.+++....+..+.         
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~  175 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAA  175 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEET
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCC
Confidence            7899999999999888764432       234589999999988776 57899999988765443321100         


Q ss_pred             --------------------------------------------------------------------------------
Q 022910          192 --------------------------------------------------------------------------------  191 (290)
Q Consensus       192 --------------------------------------------------------------------------------  191 (290)
                                                                                                      
T Consensus       176 ~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  255 (368)
T d1mdah_         176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESG  255 (368)
T ss_dssp             TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTH
T ss_pred             ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccce
Confidence                                                                                            


Q ss_pred             --------CCeEEEEEcCCCCEEEEEeCC---------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC--EEE
Q 022910          192 --------SSVTCGDFTPDGKTICTGSDD---------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST--LAL  252 (290)
Q Consensus       192 --------~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~  252 (290)
                              .....++++|++..+++...+         ..|.+||..+++.+..+.    ....+..++|+|||+  +++
T Consensus       256 ~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~----~~~~~~~~a~spDG~~~ly~  331 (368)
T d1mdah_         256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----NGHDSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----EEEEECEEEECCSSSCEEEE
T ss_pred             eeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec----CCCceeEEEECCCCCEEEEE
Confidence                    001124555555555443221         248888998888776665    445688899999997  345


Q ss_pred             EEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEE
Q 022910          253 SGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF  286 (290)
Q Consensus       253 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~  286 (290)
                      ++..++.|++||..+++.+.++..... .+.|++
T Consensus       332 s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         332 NSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             EETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             EeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence            667789999999999999999986432 444443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.72  E-value=2.6e-17  Score=133.12  Aligned_cols=172  Identities=13%  Similarity=0.116  Sum_probs=130.3

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec-CCCCEEEEEEcCCCCEEE-EeeCCCeEEEEECCcccEEEeeecC
Q 022910          113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAYLNMFSGH  190 (290)
Q Consensus       113 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~  190 (290)
                      ++|++++++|++++.+++|.+||+.+++.+.+++. +...+.+++|+|+|++++ ++..++.|++||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            46889999999999999999999999999988874 455688999999999875 5557899999999999888776543


Q ss_pred             C------CCeEEEEEcCCCCEEEEEe------------CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEE
Q 022910          191 G------SSVTCGDFTPDGKTICTGS------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL  252 (290)
Q Consensus       191 ~------~~i~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (290)
                      .      ..+..++|+|+|+++++++            .++.+.+|+..+++....+.... ....+..+.+++++.+++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee-ccCceEEEEecCCCEEEE
Confidence            2      2356789999999998765            46778899888776544333211 234566677787777665


Q ss_pred             EEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910          253 SGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS  289 (290)
Q Consensus       253 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d  289 (290)
                      ++   +.+.+|++.+++.+..+..+. .+..+.|+|+
T Consensus       161 ~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  193 (346)
T d1jmxb_         161 AG---PDIYKMDVKTGKYTVALPLRN-WNRKGYSAPD  193 (346)
T ss_dssp             ES---SSEEEECTTTCCEEEEECSTT-CCCTTBCCCB
T ss_pred             eC---CcceEEEccCCCEEEEEecCC-CccceEEecc
Confidence            43   468999999999999887643 3444445544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=8.3e-14  Score=112.94  Aligned_cols=187  Identities=13%  Similarity=0.113  Sum_probs=116.1

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEE---------ecCCCcEEEEEccCCeeeeeecccc-------CCEEEEEECC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVAT---------GGGDDKGFFWRINQGDWASEIQGHK-------DSVSSLAFSM  117 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~---------~~~dg~i~iw~~~~~~~~~~~~~~~-------~~i~~~~~~~  117 (290)
                      .+.+..+..+..+  .++|+|++..++++         +..++.|++||+.+++.+..+..+.       .....++|+|
T Consensus        38 g~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~  115 (355)
T d2bbkh_          38 GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP  115 (355)
T ss_dssp             TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred             CcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec
Confidence            3445556555444  78999944444333         2347899999999998877664332       2234678999


Q ss_pred             CCCEEEEEe--CCCcEEEEcCCCCceEEEEecCCC---------------------------------------------
Q 022910          118 DGQLLASGG--LDGLVQIWDPSSGNLKCTLEGPGG---------------------------------------------  150 (290)
Q Consensus       118 ~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~---------------------------------------------  150 (290)
                      +++++++++  .+..+.+|+..+++.+..+..+..                                             
T Consensus       116 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~  195 (355)
T d2bbkh_         116 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF  195 (355)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSC
T ss_pred             CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecc
Confidence            999877764  456788999887765543321110                                             


Q ss_pred             CEEEEEEcCCCCEEEEeeCCCeEEEEECCc--------------------------------------------------
Q 022910          151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADR--------------------------------------------------  180 (290)
Q Consensus       151 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~--------------------------------------------------  180 (290)
                      .+....+.+.+..++.++.++.+++|++..                                                  
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~  275 (355)
T d2bbkh_         196 LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH  275 (355)
T ss_dssp             BCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred             eeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceee
Confidence            011122333334455555556666665543                                                  


Q ss_pred             --------------ccEEEeeecCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEE
Q 022910          181 --------------AAYLNMFSGHGSSVTCGDFTPDGK--TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI  244 (290)
Q Consensus       181 --------------~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  244 (290)
                                    ++.+..+. +...+.+++|+|+|+  ++++++.++.|++||+++++.+..+..   +......+.+
T Consensus       276 ~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~---~G~~p~~i~~  351 (355)
T d2bbkh_         276 KTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ---LGHGPQVITT  351 (355)
T ss_dssp             TSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC---CCSSCCEEEC
T ss_pred             cCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC---cCCCccEEEe
Confidence                          33333332 223467899999997  345677799999999999999988875   3344444444


Q ss_pred             cC
Q 022910          245 SA  246 (290)
Q Consensus       245 ~~  246 (290)
                      .+
T Consensus       352 ~d  353 (355)
T d2bbkh_         352 AD  353 (355)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.54  E-value=6e-14  Score=115.69  Aligned_cols=229  Identities=10%  Similarity=0.016  Sum_probs=155.5

Q ss_pred             eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCC--EEEEEeCCC-------
Q 022910           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQ--LLASGGLDG-------  129 (290)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~--~l~~~~~dg-------  129 (290)
                      ...|.-.+....++|+++.++++...+.+|.++|+.+++....+. .+...+..++|+|+++  |++..+.+.       
T Consensus        67 gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg  146 (441)
T d1qnia2          67 GDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDG  146 (441)
T ss_dssp             CCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred             CcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcc
Confidence            344666666777788555566777788999999999998877664 3567899999999998  444444322       


Q ss_pred             ----------cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC-----------------------------
Q 022910          130 ----------LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-----------------------------  170 (290)
Q Consensus       130 ----------~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----------------------------  170 (290)
                                .+..+|..+.+...++.... ....+.|+|+|+++++++.+                             
T Consensus       147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~  225 (441)
T d1qnia2         147 TDFSLDNSYTMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA  225 (441)
T ss_dssp             SCCCGGGEEEEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred             cccccccccceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence                      23558888888877776543 47889999999998887643                             


Q ss_pred             ------------CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEcCCCCee--------eEEE
Q 022910          171 ------------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDATLRVWNPKSGEN--------IHVI  229 (290)
Q Consensus       171 ------------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~--------~~~~  229 (290)
                                  +.+.++.....+.++.+.... ....+.++|+|++++ ++..+++|.+||+.+...        ...+
T Consensus       226 ~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~  304 (441)
T d1qnia2         226 VKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI  304 (441)
T ss_dssp             HHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred             ecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEE
Confidence                        233444444444455555443 357899999999876 466799999999864321        0111


Q ss_pred             eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC----------CCcEEEEE-----ccCCCcEEEEEEecCC
Q 022910          230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT----------TGKVVSSL-----VSHTDSIECIGFSRSE  290 (290)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~----------~~~~~~~~-----~~~~~~v~~i~~s~d~  290 (290)
                      .......-.....+|+++|..+.+...|..|..|++.          ....+.++     .+|...+.+.+|+|||
T Consensus       305 ~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdG  380 (441)
T d1qnia2         305 VAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADG  380 (441)
T ss_dssp             EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCC
T ss_pred             EeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCC
Confidence            1111122234556899999989999999999999974          12355555     3565566666677775

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.54  E-value=3.9e-12  Score=98.88  Aligned_cols=219  Identities=10%  Similarity=0.017  Sum_probs=144.6

Q ss_pred             CEEEEEECCCCCcEEEE-ecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE
Q 022910           66 EVYSVACSPTDATLVAT-GGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (290)
                      .-.+|++.+ +++++++ .+..+.+..++...................++++++++.+++....+.+++++..+...+..
T Consensus        15 ~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          15 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            447999999 5565554 45567777776654432222222223457889999999887777777777776555544433


Q ss_pred             EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe
Q 022910          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE  224 (290)
Q Consensus       145 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  224 (290)
                      .. .......+++.++++++++-.....+..++...................+++.|+++++++....+.|..++.....
T Consensus        94 ~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_          94 FD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             CC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence            22 23457899999999988887777778888776544322222223456789999999988888888999999987654


Q ss_pred             eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cCCCcEEEEEEecCC
Q 022910          225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSRSE  290 (290)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~s~d~  290 (290)
                      .. .+...  .......|++.++|+++++....+.|..++..... ...+. ..-....+|+++++|
T Consensus       173 ~~-~~~~~--~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g  235 (260)
T d1rwia_         173 QV-VLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDR  235 (260)
T ss_dssp             EE-ECCCS--SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTC
T ss_pred             ee-eeecc--ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCC
Confidence            33 22211  34557899999999988888888889888765433 22222 222467889998875

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.53  E-value=3.4e-12  Score=104.03  Aligned_cols=180  Identities=11%  Similarity=0.036  Sum_probs=128.3

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccc------cCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH------KDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      .+.....++.++|++..++++.+.|+.+.+|+...++.......+      ......+.+.+++. ++..+.++.+.+|+
T Consensus       162 ~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~  240 (373)
T d2madh_         162 QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQAD  240 (373)
T ss_pred             EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEE
Confidence            445566789999977778889999999999999887766654322      22234455565554 44556788999999


Q ss_pred             CCCCceEEEEe--cC----------CCCEEEEEEcCCCCEEE----------EeeCCCeEEEEECCcccEEEeeecCCCC
Q 022910          136 PSSGNLKCTLE--GP----------GGGVEWVSWHPRGHIVL----------AGSEDSTVWMWNADRAAYLNMFSGHGSS  193 (290)
Q Consensus       136 ~~~~~~~~~~~--~~----------~~~i~~i~~~~~~~~l~----------~~~~dg~i~i~d~~~~~~~~~~~~~~~~  193 (290)
                      ..+........  ..          ......+++++++..++          +...++.+.+||+.+++.+..+. +...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~  319 (373)
T d2madh_         241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHD  319 (373)
T ss_pred             cCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCC
Confidence            88765432211  11          12234456666655443          45566789999999999888776 5677


Q ss_pred             eEEEEEcCCCCE--EEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC
Q 022910          194 VTCGDFTPDGKT--ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (290)
Q Consensus       194 i~~~~~~~~~~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (290)
                      +..++|+|+|+.  +++++.|+.|++||+.+++.+..+..   +....+.+++.+
T Consensus       320 ~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~---~g~~P~~l~~~~  371 (373)
T d2madh_         320 VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE---LGSGPQVLSVMN  371 (373)
T ss_pred             eeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECC---CCCCCcEEEEec
Confidence            899999999984  46788999999999999999998876   455566666654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.52  E-value=1.3e-12  Score=110.36  Aligned_cols=108  Identities=11%  Similarity=0.032  Sum_probs=83.0

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEec---------CCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGG---------GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (290)
                      .+..|...|.++.|+| +++.|+.++         ..+.+.+||+.+++. ..+..+...+..+.|+|+|++||... ++
T Consensus        56 ~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~  132 (470)
T d2bgra1          56 TFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NN  132 (470)
T ss_dssp             TTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TT
T ss_pred             hhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEee-cc
Confidence            4455678899999999 666666653         356789999998874 45777889999999999999999865 67


Q ss_pred             cEEEEcCCCCceEEEEecC------------------CCCEEEEEEcCCCCEEEEeeC
Q 022910          130 LVQIWDPSSGNLKCTLEGP------------------GGGVEWVSWHPRGHIVLAGSE  169 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~------------------~~~i~~i~~~~~~~~l~~~~~  169 (290)
                      .+++|+..+++..+.....                  .+....+.|+|+|++|++...
T Consensus       133 ~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             cceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence            8999999988766543221                  123456789999999988654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=2.7e-12  Score=105.71  Aligned_cols=185  Identities=13%  Similarity=-0.005  Sum_probs=133.6

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeecc------------------------------ccCCEEEEEECCCCCEEEEE-e
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQG------------------------------HKDSVSSLAFSMDGQLLASG-G  126 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------------------------~~~~i~~~~~~~~~~~l~~~-~  126 (290)
                      ..+++|+.+|.|++|++.+++.+.++..                              |.-......+.|||++|++. .
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            4577889999999999999887776522                              22234444557899988665 4


Q ss_pred             CCCcEEEEcCCCCceEEEEec-CCCCEEEEEEcCCCC--EEEEeeCCC-----------------eEEEEECCcccEEEe
Q 022910          127 LDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGH--IVLAGSEDS-----------------TVWMWNADRAAYLNM  186 (290)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~--~l~~~~~dg-----------------~i~i~d~~~~~~~~~  186 (290)
                      .++.|.++|+.+++....+.. ....+..++|+|+++  +++..+.+.                 .+..+|..+.+...+
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            688999999999998877764 456799999999998  444444332                 245688888887777


Q ss_pred             eecCCCCeEEEEEcCCCCEEEEEeCC-----------------------------------------CeEEEEcCCCCee
Q 022910          187 FSGHGSSVTCGDFTPDGKTICTGSDD-----------------------------------------ATLRVWNPKSGEN  225 (290)
Q Consensus       187 ~~~~~~~i~~~~~~~~~~~l~~~~~d-----------------------------------------g~i~i~d~~~~~~  225 (290)
                      +... ..+..+.++|+|+++++++.+                                         +.+.+++......
T Consensus       172 I~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v  250 (441)
T d1qnia2         172 VIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF  250 (441)
T ss_dssp             EEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSS
T ss_pred             EecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCce
Confidence            6643 457889999999999887643                                         3344444444455


Q ss_pred             eEEEeCCCCcccCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCC
Q 022910          226 IHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSVHMVNITT  267 (290)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~  267 (290)
                      +..+..    ......+.++|||+++++ +..+++|.+||+.+
T Consensus       251 ~~~IPv----gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         251 TRYIPV----PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             EEEECC----BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             EEEEeC----CCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            555553    234567899999998765 56689999999864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.5e-10  Score=89.79  Aligned_cols=227  Identities=17%  Similarity=0.176  Sum_probs=143.8

Q ss_pred             CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCC--cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC-CC
Q 022910           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DG  129 (290)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg  129 (290)
                      .+...+.+..+...+...+|+|++..+.++....+  .+.+.+...+.. ..+..+........|+|+++.++.... .+
T Consensus        27 dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~  105 (269)
T d2hqsa1          27 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTG  105 (269)
T ss_dssp             TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             CCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCC
Confidence            34555666667788999999994444444444433  355555555443 344447778899999999998887654 22


Q ss_pred             c--EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee-CCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCC
Q 022910          130 L--VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (290)
Q Consensus       130 ~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  204 (290)
                      .  +..+.......... ...........+++.+..++..+ .+|  .|.+.++...... .+...........|+|+++
T Consensus       106 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~  183 (269)
T d2hqsa1         106 SLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGK  183 (269)
T ss_dssp             SCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSS
T ss_pred             ccceeecccccccceee-eeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccccccccc
Confidence            2  33333333333222 23334455566777776555443 344  4666777665433 3334556777889999999


Q ss_pred             EEEEEeCCC---eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcEEEEEccCC
Q 022910          205 TICTGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVVSSLVSHT  278 (290)
Q Consensus       205 ~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~  278 (290)
                      .++..+.++   .|.+++...+.. ..+.    .........|+|||+.|+..+.   ...|+++++..+.. ..+....
T Consensus       184 ~~~~~~~~~~~~~i~~~~~~~~~~-~~~~----~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~  257 (269)
T d2hqsa1         184 FMVMVSSNGGQQHIAKQDLATGGV-QVLS----STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATD  257 (269)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCE-EECC----CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSS
T ss_pred             eeEEEeecCCceeeeEeecccccc-eEee----cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCC
Confidence            888765544   455566655543 2222    3455677899999998875543   34789999976654 5566667


Q ss_pred             CcEEEEEEec
Q 022910          279 DSIECIGFSR  288 (290)
Q Consensus       279 ~~v~~i~~s~  288 (290)
                      +.+...+|||
T Consensus       258 g~~~~p~WSP  267 (269)
T d2hqsa1         258 GQVKFPAWSP  267 (269)
T ss_dssp             SEEEEEEECC
T ss_pred             CcEEeEEeCC
Confidence            8899999998

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.47  E-value=1e-12  Score=107.37  Aligned_cols=174  Identities=9%  Similarity=-0.070  Sum_probs=117.2

Q ss_pred             CCceeeeccCCcCEEEEEECCCCCcEEEEe----------cCCCcEEEEEccCCeeeeeeccccC-------CEEEEEEC
Q 022910           54 DDSTHIFSGHSDEVYSVACSPTDATLVATG----------GGDDKGFFWRINQGDWASEIQGHKD-------SVSSLAFS  116 (290)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~----------~~dg~i~iw~~~~~~~~~~~~~~~~-------~i~~~~~~  116 (290)
                      .+.+..+.++..+  .++|+| +++.|++.          ..++.|.+||..+++.+..+..+..       ....++|+
T Consensus        56 ~~~~~~~~~~~~~--~~a~sp-Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S  132 (368)
T d1mdah_          56 GVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC  132 (368)
T ss_dssp             TEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred             CcEEEEEeCCCCC--cceECC-CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEEC
Confidence            3445555555554  589999 55555543          3467899999999988877653322       23468999


Q ss_pred             CCCCEEEEEe-CCCcEEEEcCCCCceEEEEecCCC---------------------------------------------
Q 022910          117 MDGQLLASGG-LDGLVQIWDPSSGNLKCTLEGPGG---------------------------------------------  150 (290)
Q Consensus       117 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~---------------------------------------------  150 (290)
                      |+|++|+++. .++.+.+||+.+++....+..+..                                             
T Consensus       133 pDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (368)
T d1mdah_         133 ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC  212 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccc
Confidence            9999988776 478999999877655443211100                                             


Q ss_pred             ----------------------------------------------------CEEEEEEcCCCCEEEEeeCC--------
Q 022910          151 ----------------------------------------------------GVEWVSWHPRGHIVLAGSED--------  170 (290)
Q Consensus       151 ----------------------------------------------------~i~~i~~~~~~~~l~~~~~d--------  170 (290)
                                                                          ....+++++++..++....+        
T Consensus       213 ~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~  292 (368)
T d1mdah_         213 SSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA  292 (368)
T ss_dssp             CSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred             ceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecC
Confidence                                                                00123444444444433211        


Q ss_pred             -CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCC-E-EEEEeCCCeEEEEcCCCCeeeEEEeC
Q 022910          171 -STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-T-ICTGSDDATLRVWNPKSGENIHVIRG  231 (290)
Q Consensus       171 -g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-l~~~~~dg~i~i~d~~~~~~~~~~~~  231 (290)
                       ..|.+||..+++.+..+. +...+..++|+|+|+ + ++++..++.|++||..+++.+..+..
T Consensus       293 ~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         293 AENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence             247788888888777766 345688899999996 3 45667789999999999999888874

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.41  E-value=1.6e-12  Score=109.76  Aligned_cols=149  Identities=14%  Similarity=0.147  Sum_probs=113.2

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec-----CCCCEEEEEEcCCCCEEEEeeC---------CCeEEEE
Q 022910          111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSE---------DSTVWMW  176 (290)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~---------dg~i~i~  176 (290)
                      ..+.|.+++++++.  .++.|.+||+.+++....+..     +...|.++.|+|++++|+.++.         .+.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35789999987764  478899999999987765543     3467999999999999998753         5678999


Q ss_pred             ECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC---------------cccCeEE
Q 022910          177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY---------------HTEGLTC  241 (290)
Q Consensus       177 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~~~v~~  241 (290)
                      |+.+++ +..+..+...+..+.|||+|+.||... ++.+++|+..+++..........               .......
T Consensus        98 d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          98 DLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             ETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             ECCCCc-ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            999887 455777888999999999999999864 67899999998876544332110               1123456


Q ss_pred             EEEcCCCCEEEEEeCCCc-EEEE
Q 022910          242 LTISADSTLALSGSKDGS-VHMV  263 (290)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~-i~~w  263 (290)
                      +.|+|||++|+....|.+ +..|
T Consensus       176 ~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             EEECTTSSEEEEEEEECTTCCEE
T ss_pred             cEECCCCCccceeEecCCcCceE
Confidence            789999999999876533 4433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.41  E-value=4e-10  Score=89.71  Aligned_cols=223  Identities=8%  Similarity=0.053  Sum_probs=145.2

Q ss_pred             cCEEEEEECCCCCcEEEEecC-------CCcEEEEEccCCeeeeeecc----ccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910           65 DEVYSVACSPTDATLVATGGG-------DDKGFFWRINQGDWASEIQG----HKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (290)
                      ...-.++|.| +++++++...       +|+|..|+..++........    ..+.-..+.|.++++.++++...+.|..
T Consensus        18 ~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          18 PGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence            3456789999 5666655432       46788888887765443322    2234578999999998888877777888


Q ss_pred             EcCCCCceEEEEecCCC----CEEEEEEcCCCCEEEEeeC---------------CCeEEEEECCcccEEEeeecCCCCe
Q 022910          134 WDPSSGNLKCTLEGPGG----GVEWVSWHPRGHIVLAGSE---------------DSTVWMWNADRAAYLNMFSGHGSSV  194 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~----~i~~i~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~i  194 (290)
                      ++..............+    ..+.+++.++|++.++-..               .|.|+.++.. ++...... .-...
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-~~~~p  174 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AFQFP  174 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EESSE
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC-Cccee
Confidence            88765532221111111    3577999999988777432               2345555543 33332222 22345


Q ss_pred             EEEEEcCCCC-----EEEEEeCCCeEEEEcCCCCeeeE---EEeCC-CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          195 TCGDFTPDGK-----TICTGSDDATLRVWNPKSGENIH---VIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       195 ~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                      ..++|+|++.     ++++-+..+.|..|++.....+.   .+... .........+++..+|+++++....+.|.+|+.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            7889988764     44555678899999876433221   11111 112234678999999998888888899999999


Q ss_pred             CCCcEEEEEccCCCcEEEEEEecCC
Q 022910          266 TTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       266 ~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      ..++.+..+..+...+++++|.||+
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~  279 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQT  279 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTS
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCC
Confidence            8888777777766788999999874

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.40  E-value=2.1e-09  Score=85.71  Aligned_cols=227  Identities=14%  Similarity=0.092  Sum_probs=151.7

Q ss_pred             eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC----CCcEEEEc
Q 022910           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL----DGLVQIWD  135 (290)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d  135 (290)
                      +......+-.++|.+ +++++++-...+.|+.|+.........+.........+++.++|+++++...    .+.+...+
T Consensus        35 ~~~~~~~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             EESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             eccCCcCcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence            333444567899998 6678888888899999998877655555555567889999999987776543    34466666


Q ss_pred             CCCCceEEEEec--CCCCEEEEEEcCCCCEEEEeeC------CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE
Q 022910          136 PSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (290)
Q Consensus       136 ~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  207 (290)
                      ............  .......+++.++|++.++...      .+.+..++...... ..+...-.....|+|+|+++.|+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~~~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLW  192 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEE
T ss_pred             CCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-EEEeeccceeeeeeeccccceEE
Confidence            666555444332  2335788999999987766432      23466665544332 22222234467899999998765


Q ss_pred             -EEeCCCeEEEEcCCCCe-eeEEE----eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc-----
Q 022910          208 -TGSDDATLRVWNPKSGE-NIHVI----RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS-----  276 (290)
Q Consensus       208 -~~~~dg~i~i~d~~~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----  276 (290)
                       +-+..+.|+.|++.... .....    ............|++.++|+++++....+.|.+|+. .|+.+.++..     
T Consensus       193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~  271 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE  271 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG
T ss_pred             EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCC
Confidence             45667899999876431 11111    100001233678999999999888888999999994 7999888863     


Q ss_pred             -CCCcEEEEEEecC
Q 022910          277 -HTDSIECIGFSRS  289 (290)
Q Consensus       277 -~~~~v~~i~~s~d  289 (290)
                       +...+++++|.|+
T Consensus       272 ~~~~~~~~~~~~~~  285 (319)
T d2dg1a1         272 GHMLRSTHPQFIPG  285 (319)
T ss_dssp             TCSCBCCEEEECTT
T ss_pred             CcCceeeeEEEeCC
Confidence             2335788888764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.40  E-value=1.5e-10  Score=91.72  Aligned_cols=216  Identities=11%  Similarity=0.030  Sum_probs=148.3

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc--eEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN--LKC  143 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~  143 (290)
                      .+..+++.| ++.++++...+++|..|+....  ...+......+.+++|.++|+++++...++.+.+|+.....  ...
T Consensus        29 ~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          29 FLENLASAP-DGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcCCEEECC-CCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceee
Confidence            478999999 7789999998999888875533  33344456788999999999998888888888888765432  222


Q ss_pred             EEe-cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee----------cCCCCeEEEEEcCCCCEEEEEeCC
Q 022910          144 TLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS----------GHGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       144 ~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      ... ........+++.++++++++.+..+.+..++...+.......          ........+.+.. +.++++.+..
T Consensus       106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~  184 (302)
T d2p4oa1         106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEK  184 (302)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTT
T ss_pred             ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCC
Confidence            221 234568899999999999988889999999988765332211          1123456666653 3455667778


Q ss_pred             CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE--EEccCCCcEEEEEEe
Q 022910          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS--SLVSHTDSIECIGFS  287 (290)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~i~~s  287 (290)
                      +.|+.++............. ........++++++|+++++...++.|..++.. ++...  .....-...++++|.
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg  259 (302)
T d2p4oa1         185 MLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG  259 (302)
T ss_dssp             TEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred             CeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEc
Confidence            89998887654322111100 023345679999999988888889999999864 44333  333344568899994

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=1.9e-10  Score=89.04  Aligned_cols=195  Identities=10%  Similarity=0.001  Sum_probs=137.8

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (290)
                      ....+++.+ ++.++++....+.+++++..+...+.... ......++++.++++++++-.....+..++..........
T Consensus        58 ~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~  135 (260)
T d1rwia_          58 QPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP  135 (260)
T ss_dssp             SCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC
T ss_pred             CceEEEEcC-CCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeee
Confidence            346788998 67788887777777776655555444433 2345789999999998877777777888877655433322


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee
Q 022910          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN  225 (290)
Q Consensus       146 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  225 (290)
                      .........+++.++++++++....+.|..++...................|++.++++++++....+.|..++......
T Consensus       136 ~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~  215 (260)
T d1rwia_         136 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  215 (260)
T ss_dssp             CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC
T ss_pred             ecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE
Confidence            22234567899999999888888889999999876654443334455678999999999888888889999998754432


Q ss_pred             eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910          226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (290)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~  265 (290)
                       ..+...  .-.....|+++++|.++++-..+++|+.++.
T Consensus       216 -~~~~~~--~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         216 -TVLPFT--GLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             -EECCCC--SCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             -EEEccC--CCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence             333221  2345789999999988887677777776554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=1.3e-08  Score=79.44  Aligned_cols=218  Identities=12%  Similarity=0.168  Sum_probs=154.6

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc------ccCCEEEEEECCCCC-EEEEE-eCCCcEEEEcCC
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG------HKDSVSSLAFSMDGQ-LLASG-GLDGLVQIWDPS  137 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------~~~~i~~~~~~~~~~-~l~~~-~~dg~i~i~d~~  137 (290)
                      .-..|++.+ ++.++++-..++.|++|+.. ++.+..+..      .......+++..+.. ++++. +.++.|.+++. 
T Consensus        24 ~P~gvavd~-dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          24 EPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             CEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             CccEEEEcC-CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence            468999999 67788887778999999965 555554421      122345566655443 44433 44567777775 


Q ss_pred             CCceEEEEec-CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee--cCCCCeEEEEEcCCCCEEEEEeCCCe
Q 022910          138 SGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDAT  214 (290)
Q Consensus       138 ~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~  214 (290)
                      .++....+.. .......+++.+++.++++....+.+.+++.. ++.+..+.  .+......+++.++++++++....+.
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccc
Confidence            4555555542 34567889999999988888888889998864 45555542  34567888999999998888888999


Q ss_pred             EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEEccC--CCcEEEEEEecCC
Q 022910          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVVSSLVSH--TDSIECIGFSRSE  290 (290)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~--~~~v~~i~~s~d~  290 (290)
                      |++|+.. ++.+..+.. .........|++.++|+++++-.. ++.|.+|+ .+|+.+.++...  ....+.|++.|||
T Consensus       180 V~~~d~~-G~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG  255 (279)
T d1q7fa_         180 VKVFNYE-GQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDG  255 (279)
T ss_dssp             EEEEETT-CCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred             eeeeecC-Cceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCC
Confidence            9999974 566666642 224456789999999998877554 45799998 578888877543  3467899999886

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.1e-08  Score=77.39  Aligned_cols=194  Identities=14%  Similarity=0.123  Sum_probs=123.2

Q ss_pred             cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC---cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 022910           88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG---LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV  164 (290)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  164 (290)
                      .|.|.|..... ...+..+...+...+|||||++||......   .+.+.+...+... .+..+........|+|++..+
T Consensus        20 ~l~i~d~dG~~-~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCC-cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence            47777766443 444444677788999999999998775433   4777777766654 444466778899999999988


Q ss_pred             EEeeC-CC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCCC--eEEEEcCCCCeeeEEEeCCCCcccC
Q 022910          165 LAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDA--TLRVWNPKSGENIHVIRGHPYHTEG  238 (290)
Q Consensus       165 ~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~  238 (290)
                      +.... .+  .+..+............ .........+++.+..++.. ..+|  .|.++++..+.... +..   ....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~---~~~~  172 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITW---EGSQ  172 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCC---SSSE
T ss_pred             eEeeecCCccceeecccccccceeeee-ccccccccccccccccceecccccCCceEeeeeccccccee-eec---cccc
Confidence            87654 22  23344443333333332 34444556677777665544 4444  46666766654332 222   4556


Q ss_pred             eEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910          239 LTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE  290 (290)
Q Consensus       239 v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~  290 (290)
                      .....|+|+++.++..+.++   .|.+.+...+..  .+..+........|||||
T Consensus       173 ~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG  225 (269)
T d2hqsa1         173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNG  225 (269)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTS
T ss_pred             ccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCC
Confidence            77789999999888776544   455556555443  333445677888999997

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.21  E-value=1.6e-08  Score=80.21  Aligned_cols=194  Identities=13%  Similarity=0.179  Sum_probs=127.3

Q ss_pred             EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecccc----CCEEEEEECCCCCEEEEEeC---------------
Q 022910           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK----DSVSSLAFSMDGQLLASGGL---------------  127 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~---------------  127 (290)
                      -..++|.+ ++.+++++...+.|..++..............    .....+++.++|++.++-..               
T Consensus        73 P~Gl~~~~-dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          73 PAGCQCDR-DANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             EEEEEECS-SSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             ceeEEEeC-CCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            46799999 55555556556678888876544322221111    13577999999987776432               


Q ss_pred             CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-----EEEEeeCCCeEEEEECCcccEEE------eeec-CCCCeE
Q 022910          128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-----IVLAGSEDSTVWMWNADRAAYLN------MFSG-HGSSVT  195 (290)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~------~~~~-~~~~i~  195 (290)
                      .|.|..++.. ++...... .....+.++|+|++.     ++++-+..+.|+.|++.....+.      .+.. ......
T Consensus       152 ~G~v~~~~~d-g~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         152 FGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             CEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             CceEEEEeec-CceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence            2345555443 33333322 223357789988764     44555677889999876543222      1221 223467


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEEcC
Q 022910          196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNIT  266 (290)
Q Consensus       196 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~  266 (290)
                      .|++.++|+++++....+.|.+||...+.....+..   ....+++++|.|+++ ++++.+..|.|..+++.
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~---p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC---PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC---SSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC---CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            899999999988888899999999988877666664   345688999999987 45566677888888865

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.20  E-value=3.5e-08  Score=79.97  Aligned_cols=161  Identities=14%  Similarity=0.193  Sum_probs=105.2

Q ss_pred             CCEEEEEECCCCCEEEEEeC-CCcEEEEcCCCCceEE---EEe--cCCCCEEEEEEcCCCCEEEEee-CCCeEEEEECCc
Q 022910          108 DSVSSLAFSMDGQLLASGGL-DGLVQIWDPSSGNLKC---TLE--GPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADR  180 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~---~~~--~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~  180 (290)
                      ..++++.|+|+|++++++.. ...|.+|+......+.   ...  ......+.++|+|+++++++.. .++.|.+|++..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            35789999999998888764 4578888765432221   111  2345789999999999886655 578899999876


Q ss_pred             ccEE--Ee---ee--------------cCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEcCCCCeeeE---EEeCC
Q 022910          181 AAYL--NM---FS--------------GHGSSVTCGDFTPDGKTICTGSD------DATLRVWNPKSGENIH---VIRGH  232 (290)
Q Consensus       181 ~~~~--~~---~~--------------~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~---~~~~~  232 (290)
                      .+..  ..   ..              ........+.++|+|++|+++..      .+.|..|++.....+.   .+...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            5422  11   11              11223567899999999987643      2347777765432222   11111


Q ss_pred             CCcccCeEEEEEcC-CCCEEEEEe-CCCcEEEEEcCCC
Q 022910          233 PYHTEGLTCLTISA-DSTLALSGS-KDGSVHMVNITTG  268 (290)
Q Consensus       233 ~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~~wd~~~~  268 (290)
                      .........++++| +|++|+++. .++.|.+|++...
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            11334567789998 889887775 5789999987544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.19  E-value=7.9e-08  Score=75.39  Aligned_cols=214  Identities=16%  Similarity=0.098  Sum_probs=149.4

Q ss_pred             EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec
Q 022910           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (290)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (290)
                      -+..|.+.++.++.+--..+.|..|+..+++.. .+. ....+.++++.+++.++++ +.+ -|.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            456788767777777767889999999887643 232 3456889999888876665 444 588999998876544332


Q ss_pred             C----CCCEEEEEEcCCCCEEEEeeC----CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE-EEeCCCeEEEE
Q 022910          148 P----GGGVEWVSWHPRGHIVLAGSE----DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDATLRVW  218 (290)
Q Consensus       148 ~----~~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~  218 (290)
                      .    ...++.+.+.|+|++.++...    .+.-.+|.+..++....... -.....++|+++++.++ +-+..+.|..|
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEe
Confidence            1    225788999999997776542    23456666666655444433 33467899999998665 55567889888


Q ss_pred             cCCCC--e---eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEe
Q 022910          219 NPKSG--E---NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS  287 (290)
Q Consensus       219 d~~~~--~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s  287 (290)
                      ++...  .   ....+............+++..+|++.++.-..+.|..|+ ..|+.+..+......+++++|-
T Consensus       176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEE
T ss_pred             eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEe
Confidence            76421  1   1122221112345678899999999888877788999999 5799999998777789999995

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.19  E-value=2.6e-08  Score=77.59  Aligned_cols=195  Identities=13%  Similarity=0.164  Sum_probs=136.9

Q ss_pred             EEEEECCCCCcEEE-EecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE
Q 022910           68 YSVACSPTDATLVA-TGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (290)
Q Consensus        68 ~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (290)
                      ..+++.+..+..++ ..+.++.|.+++.. +.....+. ........+++.+++..+++....+.+.+++.. ++.+..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~  150 (279)
T d1q7fa_          73 NRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKF  150 (279)
T ss_dssp             EEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred             ccccccccccccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecc
Confidence            44555553444444 33455677777653 44444443 344567889999999988888878889998854 5656655


Q ss_pred             e--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee--cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEcC
Q 022910          146 E--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSD-DATLRVWNP  220 (290)
Q Consensus       146 ~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~  220 (290)
                      .  .+......+++.++++.+++....+.|++|+.. ++.+..+.  +.......|++.|+|+++++-.. ++.|.+|+.
T Consensus       151 g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         151 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             cccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence            3  345578889999999988888889999999975 45555553  23446789999999997777543 457999985


Q ss_pred             CCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910          221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (290)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  268 (290)
                       +++.+..+.... .......+++.|+|.+++ +..+++|++|.....
T Consensus       230 -~G~~~~~~~~~~-~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         230 -DGQLISALESKV-KHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             -TSCEEEEEEESS-CCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             -CCCEEEEEeCCC-CCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence             577666665322 334578999999997655 557899999997654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.8e-09  Score=90.54  Aligned_cols=202  Identities=11%  Similarity=0.147  Sum_probs=129.1

Q ss_pred             EECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc---ccCCEEEEEECCCCCEEEEEe---------CCCcEEEEcCCC
Q 022910           71 ACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG---HKDSVSSLAFSMDGQLLASGG---------LDGLVQIWDPSS  138 (290)
Q Consensus        71 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~  138 (290)
                      .|.+ ++.++. -..+|.|.+|++.+++....+..   ....+....|+|++++++...         ..+.+.++|+.+
T Consensus        23 ~W~~-~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          23 KWIS-DTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CBSS-SSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EEeC-CCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            5887 555554 34578899999988765433332   223567788999999887763         357889999998


Q ss_pred             CceEEEEec--CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-CCC-----------------CeEEEE
Q 022910          139 GNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGS-----------------SVTCGD  198 (290)
Q Consensus       139 ~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~-----------------~i~~~~  198 (290)
                      +........  ....+....|+|+|+.||... ++.|++.+..++..++.... ...                 .-.++.
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            876544322  234566789999999998876 47899998877655443321 111                 125788


Q ss_pred             EcCCCCEEEEEeCC-C---------------------------------eEEEEcCCCCeeeEEEeCCC---CcccCeEE
Q 022910          199 FTPDGKTICTGSDD-A---------------------------------TLRVWNPKSGENIHVIRGHP---YHTEGLTC  241 (290)
Q Consensus       199 ~~~~~~~l~~~~~d-g---------------------------------~i~i~d~~~~~~~~~~~~~~---~~~~~v~~  241 (290)
                      |||+|++||....| .                                 .+.++|+.++..........   .....+..
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            99999999876422 2                                 23444444332211111100   01223678


Q ss_pred             EEEcCCCCEEEEEeC-C---CcEEEEEcCCCcEEEEEc
Q 022910          242 LTISADSTLALSGSK-D---GSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       242 ~~~~~~~~~l~~~~~-d---g~i~~wd~~~~~~~~~~~  275 (290)
                      +.|+|++++++.... +   ..|.++|..++++...+.
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence            899999887665432 2   268889999998765544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.08  E-value=3.9e-08  Score=79.67  Aligned_cols=159  Identities=10%  Similarity=0.034  Sum_probs=103.8

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee---ee--ccccCCEEEEEECCCCCEEEEEe-CCCcEEEEcCCCC
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EI--QGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSG  139 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~--~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  139 (290)
                      .+.+++|+|++..++++......|.+|+......+.   ..  .......+.+.|+|+++++++.. .+++|.+|++..+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            478999999555566555556788888865432221   11  12345688999999999876554 5889999998766


Q ss_pred             ceEEEEe--c-----------------CCCCEEEEEEcCCCCEEEEeeC------CCeEEEEECCcccEEE------eee
Q 022910          140 NLKCTLE--G-----------------PGGGVEWVSWHPRGHIVLAGSE------DSTVWMWNADRAAYLN------MFS  188 (290)
Q Consensus       140 ~~~~~~~--~-----------------~~~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~------~~~  188 (290)
                      +......  .                 .......+.++|+|++|+++..      .+.|..|++.....+.      ...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            4332111  0                 1113567899999999888743      2347778776432221      112


Q ss_pred             cCCCCeEEEEEcC-CCCEEEEE-eCCCeEEEEcCCCCe
Q 022910          189 GHGSSVTCGDFTP-DGKTICTG-SDDATLRVWNPKSGE  224 (290)
Q Consensus       189 ~~~~~i~~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~  224 (290)
                      ........++++| +|++|+++ ..++.|.+|++....
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            2344567899998 78988766 467899999875443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.99  E-value=2.8e-07  Score=72.41  Aligned_cols=198  Identities=13%  Similarity=0.061  Sum_probs=132.3

Q ss_pred             ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee-eeee--ccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEI--QGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (290)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (290)
                      ....+......+.+++|.| ++.++++...++.+..|+...... ...+  .........+.+.++++++++.+..+.+.
T Consensus        59 ~~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~  137 (302)
T d2p4oa1          59 NQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIW  137 (302)
T ss_dssp             CEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEE
T ss_pred             CEEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccce
Confidence            3445566677899999999 677888887788888887754321 1111  12345678999999999988888889999


Q ss_pred             EEcCCCCceEEEEec----------CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee--ecCCCCeEEEEEc
Q 022910          133 IWDPSSGNLKCTLEG----------PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF--SGHGSSVTCGDFT  200 (290)
Q Consensus       133 i~d~~~~~~~~~~~~----------~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~  200 (290)
                      .++...+........          .......+.+.. +.++++.+..+.|+.+++.........  .........+++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d  216 (302)
T d2p4oa1         138 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFD  216 (302)
T ss_dssp             EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEB
T ss_pred             eeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEEC
Confidence            998887654332211          112456666653 345666677889999987654322111  1123345679999


Q ss_pred             CCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEE---cCCCCEEEEEeCC
Q 022910          201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI---SADSTLALSGSKD  257 (290)
Q Consensus       201 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d  257 (290)
                      ++|+++++...++.|..++... +....... ...-...++++|   .+|++.|++++..
T Consensus       217 ~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~-~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         217 VEGNLYGATHIYNSVVRIAPDR-STTIIAQA-EQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TTCCEEEECBTTCCEEEECTTC-CEEEEECG-GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCEEEEEcCCCcEEEECCCC-CEEEEEec-CCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            9999888888899999998753 33223222 113456899999   6688888776554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=2.5e-06  Score=65.40  Aligned_cols=228  Identities=11%  Similarity=0.020  Sum_probs=151.3

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEc
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWD  135 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d  135 (290)
                      ...+..+...+.+|+|.+..+.++.+-...+.|+..++........+......+.++++..-+..|+.+ ...+.|.+.+
T Consensus        28 ~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~  107 (263)
T d1npea_          28 KAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK  107 (263)
T ss_dssp             EEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEe
Confidence            344555566788999998667777776777889988887665544444344568899998766666544 5567999999


Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC---CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eC
Q 022910          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SD  211 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~  211 (290)
                      +........+......+..++++|...+++....   .+.|...++............-....+|++.+.++.|+.+ ..
T Consensus       108 ~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~  187 (263)
T d1npea_         108 MDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG  187 (263)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred             cCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCC
Confidence            8866554444444467899999997776665433   2345555665544333333334567899999877777554 56


Q ss_pred             CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC-CCcEEEEEEecC
Q 022910          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH-TDSIECIGFSRS  289 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~s~d  289 (290)
                      .+.|...++........+.+.    ....+|++. .+.++.+-...+.|...|..+++.+..+..+ .....+|+..++
T Consensus       188 ~~~I~~~~~~g~~~~~v~~~~----~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         188 THRAECLNPAQPGRRKVLEGL----QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             TTEEEEEETTEEEEEEEEECC----CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             CCEEEEEECCCCCeEEEECCC----CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence            789999999765554444432    224567775 3444455556789999999999988776533 345557766554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=5.1e-06  Score=65.57  Aligned_cols=195  Identities=11%  Similarity=0.031  Sum_probs=122.6

Q ss_pred             eeccCCcCEEEEEECCCCCcEEEEecC----CCcEEEEEccCCeeeeeec--cccCCEEEEEECCCCCEEEEEeC-----
Q 022910           59 IFSGHSDEVYSVACSPTDATLVATGGG----DDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGL-----  127 (290)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----  127 (290)
                      .+.........+++.+ ++.++++...    .+.+...+...........  .-......+++.++|++.++...     
T Consensus        76 ~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~  154 (319)
T d2dg1a1          76 PFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN  154 (319)
T ss_dssp             EEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred             EEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeeccccccccc
Confidence            3344555678999999 6666665432    2334455544444333222  12345788999999987666432     


Q ss_pred             -CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe-eCCCeEEEEECCcc-cEE-------EeeecCCCCeEEE
Q 022910          128 -DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNADRA-AYL-------NMFSGHGSSVTCG  197 (290)
Q Consensus       128 -dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~-~~~-------~~~~~~~~~i~~~  197 (290)
                       .+.+..++..... +..+.......+.++|+|+++.|+.+ +..+.|+.|++... ...       ............|
T Consensus       155 ~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl  233 (319)
T d2dg1a1         155 PLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSC  233 (319)
T ss_dssp             CCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEE
T ss_pred             CcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeee
Confidence             2345556554433 33333233446789999999866554 56789999998642 111       1111122346789


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC---CcccCeEEEEEcCCCCEEEEEeC
Q 022910          198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP---YHTEGLTCLTISADSTLALSGSK  256 (290)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~  256 (290)
                      ++.++|++.++....+.|.+|+. .++.+..+....   .+...+++++|.+.+..+++...
T Consensus       234 ~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         234 CIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             eEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            99999999898889999999996 688777775432   12335789999997776666543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.87  E-value=6.7e-06  Score=64.07  Aligned_cols=183  Identities=11%  Similarity=0.076  Sum_probs=124.8

Q ss_pred             CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc----ccCCEEEEEECCCCCEEEEEeC----CCcEEEEc
Q 022910           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG----HKDSVSSLAFSMDGQLLASGGL----DGLVQIWD  135 (290)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d  135 (290)
                      ...+.++++.+ ++.+++++ . ..+.++|..+++.......    ....+..+.+.|+|++.++...    .+.-.+|.
T Consensus        58 ~~~~~~i~~~~-dg~l~va~-~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          58 PFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             SSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCCcEEEEEec-CCCEEEEE-e-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEee
Confidence            45678888887 66666554 3 4588999988875443221    1235788999999997666432    23456676


Q ss_pred             CCCCceEEEEecCCCCEEEEEEcCCCCEEEE-eeCCCeEEEEECCccc--------EEEeeecCCCCeEEEEEcCCCCEE
Q 022910          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAA--------YLNMFSGHGSSVTCGDFTPDGKTI  206 (290)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l  206 (290)
                      +..++....... ......++|+++++.++. -+..+.|+.|++....        ..............+++..+|++.
T Consensus       135 ~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW  213 (295)
T d2ghsa1         135 VAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW  213 (295)
T ss_dssp             EETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred             ecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEE
Confidence            666765544443 334678999999986554 4557889999875321        112233345567899999999988


Q ss_pred             EEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEc-CCCCEEEEE
Q 022910          207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSG  254 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~  254 (290)
                      ++....+.|..||. .++.+..+..   ....+++++|- |+.+.|++.
T Consensus       214 va~~~~g~V~~~dp-~G~~~~~i~l---P~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         214 NARWGEGAVDRYDT-DGNHIARYEV---PGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEETTTEEEEECT-TCCEEEEEEC---SCSBEEEEEEESTTSCEEEEE
T ss_pred             eeeeCCCceEEecC-CCcEeeEecC---CCCceEEEEEeCCCCCEEEEE
Confidence            88888899999996 5778777775   33568999996 566655544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.9e-07  Score=78.03  Aligned_cols=183  Identities=11%  Similarity=0.002  Sum_probs=113.1

Q ss_pred             CEEEEEECCCCCcEEEEe--------cCCCcEEEEEccCCeeeeee--ccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910           66 EVYSVACSPTDATLVATG--------GGDDKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~--------~~dg~i~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (290)
                      .+....|+|++..+++..        +..+.+.+||+.++......  ......+....|||+|+.||... ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            566788999444444332        34578999999987654332  23344566789999999998876 67899999


Q ss_pred             CCCCceEEEEec-CCCC-----------------EEEEEEcCCCCEEEEeeCC-C-------------------------
Q 022910          136 PSSGNLKCTLEG-PGGG-----------------VEWVSWHPRGHIVLAGSED-S-------------------------  171 (290)
Q Consensus       136 ~~~~~~~~~~~~-~~~~-----------------i~~i~~~~~~~~l~~~~~d-g-------------------------  171 (290)
                      ..++..++.... ..+.                 -..+.|||+|++||....| .                         
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~  220 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence            887766554432 1111                 2578899999999986422 1                         


Q ss_pred             --------eEEEEECCcccEEEeee------cCCCCeEEEEEcCCCCEEEEEeC-C---CeEEEEcCCCCeeeEEEeCCC
Q 022910          172 --------TVWMWNADRAAYLNMFS------GHGSSVTCGDFTPDGKTICTGSD-D---ATLRVWNPKSGENIHVIRGHP  233 (290)
Q Consensus       172 --------~i~i~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~  233 (290)
                              .+.++|+.++.......      .....+..+.|+|++++++.... +   ..|.++|..+++....+... 
T Consensus       221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~-  299 (465)
T d1xfda1         221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-  299 (465)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-
T ss_pred             cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc-
Confidence                    24445554332211111      11224678899999886665432 2   25888999998876554321 


Q ss_pred             Cccc----CeEEEEEcCCCCEE
Q 022910          234 YHTE----GLTCLTISADSTLA  251 (290)
Q Consensus       234 ~~~~----~v~~~~~~~~~~~l  251 (290)
                       ...    .-....|+|+|+.+
T Consensus       300 -~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         300 -SEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             -CSSCCCCCCCCCEECTTSCSE
T ss_pred             -CCceEeccCCceeEccCCCee
Confidence             111    12345788988743

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.76  E-value=7.5e-07  Score=68.60  Aligned_cols=190  Identities=12%  Similarity=0.121  Sum_probs=109.1

Q ss_pred             ECCC--CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC-C-----CcEEEEcCCCCceEE
Q 022910           72 CSPT--DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-D-----GLVQIWDPSSGNLKC  143 (290)
Q Consensus        72 ~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~  143 (290)
                      .+|+  +..+++++  +|.|.+.++..++.. .+..+.+.+...+|||||++||.... +     ..|.+++..+++...
T Consensus         6 ~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           6 LNPDIHGDRIIFVC--CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEEEEETTEEEEEE--TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             cCCCCCCCEEEEEe--CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            4563  44444443  467888899887754 45556778899999999999886542 2     247788887776554


Q ss_pred             EEec------CCCCEEEEEEcCCCCEEEEeeCC------CeEEEEECCcccEEEee------------------------
Q 022910          144 TLEG------PGGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLNMF------------------------  187 (290)
Q Consensus       144 ~~~~------~~~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~------------------------  187 (290)
                      ....      .........|+|+++.|+.....      ..+...+..........                        
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELP  162 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCT
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccc
Confidence            3211      11245678899999988875331      23444444332211100                        


Q ss_pred             -------------------------ecCCCCeEEEEEcCCCCEEEE-EeC--CCeEEEEcCCCCeeeEEEeCCCCcccCe
Q 022910          188 -------------------------SGHGSSVTCGDFTPDGKTICT-GSD--DATLRVWNPKSGENIHVIRGHPYHTEGL  239 (290)
Q Consensus       188 -------------------------~~~~~~i~~~~~~~~~~~l~~-~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v  239 (290)
                                               ...........++++  .++. ...  ...|.++|+.++... .+...  ..  .
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~--~~--~  235 (281)
T d1k32a2         163 HWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLR-KHTSF--TD--Y  235 (281)
T ss_dssp             TSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCE-ECCCC--CS--S
T ss_pred             eeeeeccCCcceeeeeccccceeeccCCccccceeeeecc--ccceecccccccceEEEeCCCCceE-EeecC--CC--c
Confidence                                     001111222233332  2322 222  335777788765543 33221  12  2


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 022910          240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVS  272 (290)
Q Consensus       240 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  272 (290)
                      ....|+|+|+.|+.. .++.|+++|+.+++...
T Consensus       236 ~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         236 YPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             CEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             ccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            234689999988764 46889999998887543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.4e-05  Score=59.80  Aligned_cols=221  Identities=9%  Similarity=0.012  Sum_probs=141.3

Q ss_pred             cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe----eeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEcC
Q 022910           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDP  136 (290)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~  136 (290)
                      .....+.+++|.+..+.++.+-...+.|+..++....    ....+......+..+++.+.+..|+.+ ...+.|.+.++
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            3455678999998666666666667777776665321    112222233456678887766655554 45678999999


Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCCCEEEEee--CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCCC
Q 022910          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDA  213 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg  213 (290)
                      ........+.........++++|...+|+...  ..+.|...++............-..+.+|++.+.++.|+.+ ...+
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~  186 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcC
Confidence            87766555665566789999999666555543  34568778876655444444344567899999977766655 5678


Q ss_pred             eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEE
Q 022910          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI  284 (290)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i  284 (290)
                      .|...++........+.... ......++++. .+.++.+-..++.|+..+..+++....+......+.+|
T Consensus       187 ~I~~~~~dG~~~~~~~~~~~-~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i  255 (266)
T d1ijqa1         187 SISSIDVNGGNRKTILEDEK-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM  255 (266)
T ss_dssp             EEEEEETTSCSCEEEEECTT-TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCE
T ss_pred             EEEEEECCCCCEEEEEeCCC-cccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceEE
Confidence            99999987655444433321 23345677776 34455555567899999988887777666544444333

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.51  E-value=4.3e-05  Score=61.24  Aligned_cols=184  Identities=14%  Similarity=0.084  Sum_probs=122.0

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeeccc---------------------------------------cCCE--EEEEEC
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQGH---------------------------------------KDSV--SSLAFS  116 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------------------------------------~~~i--~~~~~~  116 (290)
                      ..|.+|+..|.|+++-+.+++.+..+...                                       .+..  ..+.+.
T Consensus        14 y~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~T   93 (459)
T d1fwxa2          14 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT   93 (459)
T ss_dssp             EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEE
T ss_pred             EEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCccccc
Confidence            35778999999999999988876665210                                       0111  134443


Q ss_pred             C---CCCEEEEEe-CCCcEEEEcCCCCceEEEEec-CCCCEEEEEEcC--CCCEEEEeeCC------------------C
Q 022910          117 M---DGQLLASGG-LDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHP--RGHIVLAGSED------------------S  171 (290)
Q Consensus       117 ~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~--~~~~l~~~~~d------------------g  171 (290)
                      .   ||+++++.. .++.|.+.|+.+.+..+.+.. ....+..+...+  +-.+++.++..                  +
T Consensus        94 dGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          94 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             CCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence            2   678777765 578999999999988665543 334577777655  44577776653                  2


Q ss_pred             eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------
Q 022910          172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA--------------------------------------  213 (290)
Q Consensus       172 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------------------------------  213 (290)
                      .+.++|..+.+...++.. ...+..+.++|+|+++++.+.+.                                      
T Consensus       174 ~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            367889998887776653 34567889999999999876431                                      


Q ss_pred             eEEEEcCCCC---eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 022910          214 TLRVWNPKSG---ENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNIT  266 (290)
Q Consensus       214 ~i~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~  266 (290)
                      .+.+.|.+..   ..+..+.    .......+.++|||+++++++. +.++.|+|++
T Consensus       253 gV~VVD~~~~~~~~v~~yIP----VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             CceeecccccCCcceeEEEe----cCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            1233333321   1111222    2234567899999999888765 7899999985

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.39  E-value=3.9e-05  Score=61.49  Aligned_cols=207  Identities=12%  Similarity=0.127  Sum_probs=131.0

Q ss_pred             EEEECC---CCCcEEEEecCCCcEEEEEccCCeeeeeecc-ccCCEEEEEECC--CCCEEEEEeCC--------------
Q 022910           69 SVACSP---TDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSM--DGQLLASGGLD--------------  128 (290)
Q Consensus        69 ~~~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~~d--------------  128 (290)
                      .+++..   ++..+++.-..+.+|.+-|+.+.+....+.. ....+..+...+  +..|++..+..              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            444543   3445666677889999999999887654432 345667777754  45577776653              


Q ss_pred             ----CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCC---------------eEEEE-------------
Q 022910          129 ----GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS---------------TVWMW-------------  176 (290)
Q Consensus       129 ----g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---------------~i~i~-------------  176 (290)
                          +.+.++|..+.+....+.... ....+.++++|+++++.+.+.               .+.++             
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                236788999888877766443 467799999999999876431               23333             


Q ss_pred             ----------ECCcc---cEEEeeecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEcCCCCeee--------EEEeCCCC
Q 022910          177 ----------NADRA---AYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENI--------HVIRGHPY  234 (290)
Q Consensus       177 ----------d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--------~~~~~~~~  234 (290)
                                |.++.   ..++.+. .......+.++|+|+++++++ .+.++.|+|++.-...        ..+.....
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             cEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                      33321   1111122 223356789999999998665 5889999998632111        11111111


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----------cEEEEEccC
Q 022910          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTG----------KVVSSLVSH  277 (290)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----------~~~~~~~~~  277 (290)
                      ..-..-..+|+..|.-..+---|..|.-|++...          ..+.++..|
T Consensus       327 lglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~  379 (459)
T d1fwxa2         327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH  379 (459)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred             cCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccc
Confidence            3344566789888876666678999999998432          456666544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.34  E-value=3.2e-05  Score=59.05  Aligned_cols=95  Identities=15%  Similarity=0.193  Sum_probs=67.7

Q ss_pred             EECCC--CCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-C-----CeEEEEECCcccEEE
Q 022910          114 AFSMD--GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D-----STVWMWNADRAAYLN  185 (290)
Q Consensus       114 ~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~  185 (290)
                      ..+|+  |++++..+ +|.|.+.++.+++.. .+..+.+.+...+|||+|+.||.... +     ..|.++++.+++..+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35688  99888765 567999999988765 45556677899999999999886542 1     248888887776544


Q ss_pred             eeec------CCCCeEEEEEcCCCCEEEEEe
Q 022910          186 MFSG------HGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       186 ~~~~------~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      ....      .........|+|+++.|+...
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            3211      123456788999999887653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.21  E-value=0.00054  Score=52.04  Aligned_cols=211  Identities=13%  Similarity=0.128  Sum_probs=136.0

Q ss_pred             EEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC-ceEEEEec
Q 022910           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-NLKCTLEG  147 (290)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~  147 (290)
                      +.-.+| ..+.||.-+ ..++.+|++++.+.++.+. ...+|.--.|-.+ +.|+..+ +..|+-|+++.. .+...+..
T Consensus        67 sAIMhP-~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR  141 (327)
T d1utca2          67 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDR  141 (327)
T ss_dssp             EEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred             hhhcCC-CCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhh
Confidence            344678 667776544 4689999999998888877 4456777788644 4455555 457999999543 46666654


Q ss_pred             CC----CCEEEEEEcCCCCEEEEeeC-------CCeEEEEECCcccEEEeeecCCCCeEEEEEcC--CC-CEEEE---Ee
Q 022910          148 PG----GGVEWVSWHPRGHIVLAGSE-------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP--DG-KTICT---GS  210 (290)
Q Consensus       148 ~~----~~i~~i~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~--~~-~~l~~---~~  210 (290)
                      |.    ..|-.-..+++.++++..+-       .|.+.+|..+.+ ..+.+.+|......+.+.-  .. .+|+.   +.
T Consensus       142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~  220 (327)
T d1utca2         142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ  220 (327)
T ss_dssp             CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEET
T ss_pred             cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCC
Confidence            43    35777777888888776542       467889998754 3455556644443333321  11 12222   22


Q ss_pred             CCCeEEEEcCCCCe---e---eEEE---eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcE
Q 022910          211 DDATLRVWNPKSGE---N---IHVI---RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI  281 (290)
Q Consensus       211 ~dg~i~i~d~~~~~---~---~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v  281 (290)
                      ..+.++|.++.+..   .   .+..   ........-..++..++.-.+++.-+.-|.|++||+.++.++..-+-...+|
T Consensus       221 ~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~i  300 (327)
T d1utca2         221 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI  300 (327)
T ss_dssp             TEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCce
Confidence            34688888875421   1   1111   1111234456788889888889999999999999999999998776656666


Q ss_pred             EEEE
Q 022910          282 ECIG  285 (290)
Q Consensus       282 ~~i~  285 (290)
                      ...+
T Consensus       301 F~~a  304 (327)
T d1utca2         301 FVTA  304 (327)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            5433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.15  E-value=0.00042  Score=58.77  Aligned_cols=187  Identities=11%  Similarity=0.110  Sum_probs=116.7

Q ss_pred             CCcEEEEEccCCeeeeeeccc-------------------------------------cCCE-EEEEECCCCCEEEEEeC
Q 022910           86 DDKGFFWRINQGDWASEIQGH-------------------------------------KDSV-SSLAFSMDGQLLASGGL  127 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~-------------------------------------~~~i-~~~~~~~~~~~l~~~~~  127 (290)
                      .|.|+-+|+.+++.+.++...                                     ...+ ...++.+....++.+..
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg  254 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence            678999999999988764311                                     0111 12345566665555443


Q ss_pred             ----------------CCcEEEEcCCCCceEEEEecCCC---------CEEEEEEcCCCC---EEEEeeCCCeEEEEECC
Q 022910          128 ----------------DGLVQIWDPSSGNLKCTLEGPGG---------GVEWVSWHPRGH---IVLAGSEDSTVWMWNAD  179 (290)
Q Consensus       128 ----------------dg~i~i~d~~~~~~~~~~~~~~~---------~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~  179 (290)
                                      ...+.-.|+.+++.+-.++....         ......+..+++   .++.++.+|.++++|..
T Consensus       255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~  334 (571)
T d2ad6a1         255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence                            35678889999998877764321         111122222443   56778899999999999


Q ss_pred             cccEEEeeecCC-------------------------------------C--CeEEEEEcCCCCEEEEEeCC--------
Q 022910          180 RAAYLNMFSGHG-------------------------------------S--SVTCGDFTPDGKTICTGSDD--------  212 (290)
Q Consensus       180 ~~~~~~~~~~~~-------------------------------------~--~i~~~~~~~~~~~l~~~~~d--------  212 (290)
                      +++.+...+...                                     +  .-...+++|...++++...+        
T Consensus       335 tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~  414 (571)
T d2ad6a1         335 NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF  414 (571)
T ss_dssp             TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred             CCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccc
Confidence            988764321100                                     0  00124567766666553322        


Q ss_pred             -----------------------------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 022910          213 -----------------------------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV  263 (290)
Q Consensus       213 -----------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w  263 (290)
                                                   |.|.-+|+.+++.+..........+.+    +.-.+.++++|+.||.++.+
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~----l~TagglVf~G~~dg~l~A~  490 (571)
T d2ad6a1         415 MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT----LYTKGGLVWYATLDGYLKAL  490 (571)
T ss_dssp             CCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC----EEETTTEEEEECTTSEEEEE
T ss_pred             cccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcce----eEecCCEEEEECCCCeEEEE
Confidence                                         468888999988877665321111111    12246688889999999999


Q ss_pred             EcCCCcEEEEEcc
Q 022910          264 NITTGKVVSSLVS  276 (290)
Q Consensus       264 d~~~~~~~~~~~~  276 (290)
                      |.++|+.+.++..
T Consensus       491 Da~tGe~lW~~~l  503 (571)
T d2ad6a1         491 DNKDGKELWNFKM  503 (571)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             ECCCCcEEEEEEC
Confidence            9999999988864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=0.00075  Score=51.10  Aligned_cols=197  Identities=9%  Similarity=-0.065  Sum_probs=123.6

Q ss_pred             CcEEEEEccCCee-----eeeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCC
Q 022910           87 DKGFFWRINQGDW-----ASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR  160 (290)
Q Consensus        87 g~i~iw~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~  160 (290)
                      +.|+-..+.....     ...+..+...+..++|.+..+.|+.+ ...+.|+..++........+......+..+++..-
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~   89 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence            5677777654321     12233344567889998877776665 45678988888776665555544456889999876


Q ss_pred             CCEEE-EeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEcCCCCeeeEEEeCCCCcc
Q 022910          161 GHIVL-AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHPYHT  236 (290)
Q Consensus       161 ~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~  236 (290)
                      +..|+ +-...+.|.+.++........+......+..+++.|...+|+....   .+.|...++...........   .-
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~---~~  166 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD---NL  166 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT---TC
T ss_pred             CCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee---cc
Confidence            66555 4455779999999866543334434467899999997777765432   23355556654433333322   33


Q ss_pred             cCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEe
Q 022910          237 EGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS  287 (290)
Q Consensus       237 ~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s  287 (290)
                      .....+++.+.++.|+.+ ...+.|...++........+.+.. ...+|++.
T Consensus       167 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~  217 (263)
T d1npea_         167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY  217 (263)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE
T ss_pred             cccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE
Confidence            467899999877666555 557789999986544433333322 33456553

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=0.0025  Score=48.19  Aligned_cols=186  Identities=11%  Similarity=0.006  Sum_probs=118.5

Q ss_pred             cEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe-CCCcEEEEcCCCCc----eEEEEecCCCCE
Q 022910           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSGN----LKCTLEGPGGGV  152 (290)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~~~~~~~i  152 (290)
                      .+|++-.  ..|+..++.+......+. ....+..+.|.+..+.|+... ..+.|.-.++....    ....+......+
T Consensus         3 fLl~s~~--~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p   79 (266)
T d1ijqa1           3 YLFFTNR--HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (266)
T ss_dssp             EEEEECB--SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEECC--CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence            3454443  458888988765444444 445678999998888776664 45667766664321    222233333456


Q ss_pred             EEEEEcCCCCEEEEe-eCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEcCCCCeeeEEE
Q 022910          153 EWVSWHPRGHIVLAG-SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS--DDATLRVWNPKSGENIHVI  229 (290)
Q Consensus       153 ~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~  229 (290)
                      ..+++.+.+..|+.+ ...+.|.+.++........+.........+++.|...+|+...  ..+.|...++........+
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~  159 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  159 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence            778887766555554 4567899999987766665665667789999999666665443  3456777777544443333


Q ss_pred             eCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCc
Q 022910          230 RGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGK  269 (290)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~  269 (290)
                      ..   .-...+.+++++.+..|+.+ ...+.|...++....
T Consensus       160 ~~---~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         160 TE---NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             CS---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cc---ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            32   33557899999876655555 556789988986543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.87  E-value=0.0035  Score=53.25  Aligned_cols=187  Identities=11%  Similarity=0.108  Sum_probs=115.4

Q ss_pred             CCcEEEEEccCCeeeeeecccc-------------------------------------CC-EEEEEECCCCCEEEEEeC
Q 022910           86 DDKGFFWRINQGDWASEIQGHK-------------------------------------DS-VSSLAFSMDGQLLASGGL  127 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~-------------------------------------~~-i~~~~~~~~~~~l~~~~~  127 (290)
                      .|.|+-+|+.+++.+.++....                                     .. -..+++.+...+++.+..
T Consensus       181 ~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg  260 (596)
T d1w6sa_         181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (596)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccc
Confidence            4889999999999887653110                                     01 123345556665555532


Q ss_pred             ----------------CCcEEEEcCCCCceEEEEecCCC---------CEEEEEE-cCCC---CEEEEeeCCCeEEEEEC
Q 022910          128 ----------------DGLVQIWDPSSGNLKCTLEGPGG---------GVEWVSW-HPRG---HIVLAGSEDSTVWMWNA  178 (290)
Q Consensus       128 ----------------dg~i~i~d~~~~~~~~~~~~~~~---------~i~~i~~-~~~~---~~l~~~~~dg~i~i~d~  178 (290)
                                      ...|.-.|+.+++.+-.++....         .+..+.. ..++   +.++.+..+|.++++|-
T Consensus       261 ~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr  340 (596)
T d1w6sa_         261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (596)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecC
Confidence                            34578889999998876654211         1222221 2233   36778899999999999


Q ss_pred             CcccEEEeeecCC-------------CC--------------------------eEEEEEcCCCCEEEEEeC--------
Q 022910          179 DRAAYLNMFSGHG-------------SS--------------------------VTCGDFTPDGKTICTGSD--------  211 (290)
Q Consensus       179 ~~~~~~~~~~~~~-------------~~--------------------------i~~~~~~~~~~~l~~~~~--------  211 (290)
                      .+++++.......             .+                          -..++++|...++++...        
T Consensus       341 ~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~  420 (596)
T d1w6sa_         341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420 (596)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccc
Confidence            9988764322100             00                          012355665555544321        


Q ss_pred             -------------------------------CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 022910          212 -------------------------------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV  260 (290)
Q Consensus       212 -------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  260 (290)
                                                     -|.|.-||+.+++.+......    .++.+-.++..+.+++.|+.||.+
T Consensus       421 ~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~----~~~~gg~lsTagglVF~G~~Dg~l  496 (596)
T d1w6sa_         421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGGTMATAGDLVFYGTLDGYL  496 (596)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEE
T ss_pred             ccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCCC----CCCccceeEecCCEEEEECCCCeE
Confidence                                           156888888888877655422    111111122256788889999999


Q ss_pred             EEEEcCCCcEEEEEcc
Q 022910          261 HMVNITTGKVVSSLVS  276 (290)
Q Consensus       261 ~~wd~~~~~~~~~~~~  276 (290)
                      +.+|.++|+.+.++..
T Consensus       497 ~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         497 KARDSDTGDLLWKFKI  512 (596)
T ss_dssp             EEEETTTCCEEEEEEC
T ss_pred             EEEECCCCcEeeEEEC
Confidence            9999999999998864

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.84  E-value=0.0016  Score=54.94  Aligned_cols=187  Identities=13%  Similarity=0.187  Sum_probs=117.4

Q ss_pred             CCcEEEEEccCCeeeeeeccc------------------------------cCCE-EEEEECCCCCEEEEEeC-------
Q 022910           86 DDKGFFWRINQGDWASEIQGH------------------------------KDSV-SSLAFSMDGQLLASGGL-------  127 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~------------------------------~~~i-~~~~~~~~~~~l~~~~~-------  127 (290)
                      .|.|.-+|..+++.+.++..-                              ...+ ..+.+.+...+++.+..       
T Consensus       177 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~  256 (560)
T d1kv9a2         177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (560)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             cceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCccccc
Confidence            367999999999888766310                              1111 12455566665554321       


Q ss_pred             ------------CCcEEEEcCCCCceEEEEecCCCCE---------EEEEEcCCC---CEEEEeeCCCeEEEEECCcccE
Q 022910          128 ------------DGLVQIWDPSSGNLKCTLEGPGGGV---------EWVSWHPRG---HIVLAGSEDSTVWMWNADRAAY  183 (290)
Q Consensus       128 ------------dg~i~i~d~~~~~~~~~~~~~~~~i---------~~i~~~~~~---~~l~~~~~dg~i~i~d~~~~~~  183 (290)
                                  ...|.-.|+.+++....++.....+         .-+....++   ..++.+..+|.++++|-.++++
T Consensus       257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~  336 (560)
T d1kv9a2         257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (560)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence                        3467788999999877665432211         112222233   3677888999999999999887


Q ss_pred             EEeeecCC------------------------------------CCeEEEEEcCCCCEEEEEeC----------------
Q 022910          184 LNMFSGHG------------------------------------SSVTCGDFTPDGKTICTGSD----------------  211 (290)
Q Consensus       184 ~~~~~~~~------------------------------------~~i~~~~~~~~~~~l~~~~~----------------  211 (290)
                      +.......                                    ..-...+++|+..++++...                
T Consensus       337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~  416 (560)
T d1kv9a2         337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (560)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             cccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccc
Confidence            64332110                                    00013456776666665432                


Q ss_pred             --------------------CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 022910          212 --------------------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV  271 (290)
Q Consensus       212 --------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  271 (290)
                                          .|.|.-||+.+++.+..+....    ...+-.+.-.+.++++|+.||.++.+|..+|+.+
T Consensus       417 ~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~----~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC----CCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence                                2568889999998877765322    1111112224678889999999999999999999


Q ss_pred             EEEcc
Q 022910          272 SSLVS  276 (290)
Q Consensus       272 ~~~~~  276 (290)
                      .++..
T Consensus       493 W~~~l  497 (560)
T d1kv9a2         493 WQFEA  497 (560)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            98874

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.81  E-value=0.0018  Score=54.82  Aligned_cols=143  Identities=13%  Similarity=0.262  Sum_probs=90.5

Q ss_pred             cEEEEcCCCCceEEEEecCCC---------CEEEEEEcCCC---CEEEEeeCCCeEEEEECCcccEEEeeecCCC-----
Q 022910          130 LVQIWDPSSGNLKCTLEGPGG---------GVEWVSWHPRG---HIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-----  192 (290)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~---------~i~~i~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----  192 (290)
                      .|.-.|+.+++....++....         +........++   ..++.++.+|.++++|..+++.+........     
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            577788888887766553221         11222222233   3677888999999999999887654321100     


Q ss_pred             ------------------------------CeEEEEEcCCCCEEEEEeCC------------------------------
Q 022910          193 ------------------------------SVTCGDFTPDGKTICTGSDD------------------------------  212 (290)
Q Consensus       193 ------------------------------~i~~~~~~~~~~~l~~~~~d------------------------------  212 (290)
                                                    .-..++++|...++++...+                              
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  443 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccc
Confidence                                          01124567766666553221                              


Q ss_pred             -------------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          213 -------------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       213 -------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                                   |.|.-||+.+++.+..+.......+.    ..+-.+.+|++|+.||.++.+|..+|+.+.++..
T Consensus       444 ~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg----~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGG----TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCC----EEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cccccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCc----eEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence                         35777888888887776542211111    1222577888999999999999999999988874

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.74  E-value=0.0071  Score=49.04  Aligned_cols=220  Identities=10%  Similarity=0.083  Sum_probs=116.1

Q ss_pred             CCcCEEEEEECCCCCcEEEEecCCC----cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC----------
Q 022910           63 HSDEVYSVACSPTDATLVATGGGDD----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD----------  128 (290)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------  128 (290)
                      +.-.+..++++|++..++++-+..|    .|+++|+.+++.+...-.. .....+.|.++++.|+....+          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            3444556788995544444443333    6999999999876532211 122568899999977654432          


Q ss_pred             ------CcEEEEcCCCCce--EEEEecCC--CCEEEEEEcCCCCEEEEeeC---CCe--EEEEECCccc--------EEE
Q 022910          129 ------GLVQIWDPSSGNL--KCTLEGPG--GGVEWVSWHPRGHIVLAGSE---DST--VWMWNADRAA--------YLN  185 (290)
Q Consensus       129 ------g~i~i~d~~~~~~--~~~~~~~~--~~i~~i~~~~~~~~l~~~~~---dg~--i~i~d~~~~~--------~~~  185 (290)
                            ..|..+.+.+...  ...+....  ..+..+..++++++++....   .+.  +.+.++....        ...
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                  2577787776532  23344332  34667778899998765432   233  4455554321        112


Q ss_pred             eeecCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEcCCCCee--eEEEeCCCCcccCeEEEEEcCCCCEEEEE-eCCC-
Q 022910          186 MFSGHGSSVTCGDFTPDGKTICTGS---DDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSG-SKDG-  258 (290)
Q Consensus       186 ~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg-  258 (290)
                      .+........-+. +.++.+++...   .++.|...++.....  ...+-..  +...+..-.+...+.+|+.. ..++ 
T Consensus       282 ~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~--~~~~~~~~~~~~~~~~lvl~~~~~~~  358 (430)
T d1qfma1         282 LIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE--HEKDVLEWVACVRSNFLVLCYLHDVK  358 (430)
T ss_dssp             EECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECC--CSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             eecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecc--cCcceeeeEEEEECCEEEEEEEcCCE
Confidence            2222223333322 22233333332   246677777665432  2233221  23334333333334455544 4454 


Q ss_pred             -cEEEEEcCCCcEEEEEccCCCcEEEEEE
Q 022910          259 -SVHMVNITTGKVVSSLVSHTDSIECIGF  286 (290)
Q Consensus       259 -~i~~wd~~~~~~~~~~~~~~~~v~~i~~  286 (290)
                       .|+++++.+++....+....+.|..+..
T Consensus       359 ~~l~v~~~~~~~~~~~~~~~~~sv~~~~~  387 (430)
T d1qfma1         359 NTLQLHDLATGALLKIFPLEVGSVVGYSG  387 (430)
T ss_dssp             EEEEEEETTTCCEEEEECCCSSEEEEEEC
T ss_pred             eEEEEEECCCCcEEEecCCCCceEeeccC
Confidence             6889999888776655544455555443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.54  E-value=0.017  Score=48.80  Aligned_cols=200  Identities=17%  Similarity=0.167  Sum_probs=123.1

Q ss_pred             CCcEEEEecCCCcEEEEEc-cCCeeeeeecccc-----------CCEEEEEECCC----CCEEEEEeCCCcEEEEcCCCC
Q 022910           76 DATLVATGGGDDKGFFWRI-NQGDWASEIQGHK-----------DSVSSLAFSMD----GQLLASGGLDGLVQIWDPSSG  139 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~-----------~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~  139 (290)
                      ++.++++++..+.+...+. .+++.+.++....           ..-+.+++.++    ..+++.++.|+.|.-.|..++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            4555555555677878886 5788877654111           01133444332    346888999999999999999


Q ss_pred             ceEEEEecCCCCE-EEEEEcC--CCCEEEEeeC------CCeEEEEECCcccEEEeeecCC-------------------
Q 022910          140 NLKCTLEGPGGGV-EWVSWHP--RGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHG-------------------  191 (290)
Q Consensus       140 ~~~~~~~~~~~~i-~~i~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~-------------------  191 (290)
                      +++..+....... ..+.-.|  -+..++++..      .|.|+-+|+++++.+-++....                   
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g  221 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccc
Confidence            9988775321100 0011111  1445666543      4899999999999887653210                   


Q ss_pred             ------------------C-CeEEEEEcCCCCEEEEEeCC----------------CeEEEEcCCCCeeeEEEeCCCC--
Q 022910          192 ------------------S-SVTCGDFTPDGKTICTGSDD----------------ATLRVWNPKSGENIHVIRGHPY--  234 (290)
Q Consensus       192 ------------------~-~i~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~--  234 (290)
                                        . .-..+++.+...+++.+...                ..|.-.|+++++....++....  
T Consensus       222 ~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~  301 (596)
T d1w6sa_         222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (596)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccc
Confidence                              0 11234566666677665432                3477889999998887765431  


Q ss_pred             ----cccCeEEEEE-cCCC---CEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          235 ----HTEGLTCLTI-SADS---TLALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       235 ----~~~~v~~~~~-~~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                          ......-+.. ..+|   ..++.+..+|.++++|..+|+++...+
T Consensus       302 Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~  350 (596)
T d1w6sa_         302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (596)
T ss_dssp             SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecc
Confidence                0111222221 2234   468888999999999999999987554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.44  E-value=0.015  Score=48.91  Aligned_cols=197  Identities=12%  Similarity=0.144  Sum_probs=119.4

Q ss_pred             CCcEEEEecCCCcEEEEEcc-CCeeeeeeccccC-----------CEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910           76 DATLVATGGGDDKGFFWRIN-QGDWASEIQGHKD-----------SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~-----------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (290)
                      ++.++++.+.++.|...|.. +++.+.++.....           .-+.+++.  +..|+.++.+|.|.-.|..+++.+.
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence            45555444446888888874 6888876541100           00123332  3467888899999999999999876


Q ss_pred             EEecCC----CCEEEEEEcCCCCEEEEee------CCCeEEEEECCcccEEEeeecCC----------------------
Q 022910          144 TLEGPG----GGVEWVSWHPRGHIVLAGS------EDSTVWMWNADRAAYLNMFSGHG----------------------  191 (290)
Q Consensus       144 ~~~~~~----~~i~~i~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~----------------------  191 (290)
                      ......    ..++.--.-.++ .++.+.      ..|.|+-+|+++++.+-++....                      
T Consensus       140 ~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~  218 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG  218 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred             cccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence            654221    111111011133 444444      36889999999999877653211                      


Q ss_pred             ---------------CCe-EEEEEcCCCCEEEEEeC----------------CCeEEEEcCCCCeeeEEEeCCCC-----
Q 022910          192 ---------------SSV-TCGDFTPDGKTICTGSD----------------DATLRVWNPKSGENIHVIRGHPY-----  234 (290)
Q Consensus       192 ---------------~~i-~~~~~~~~~~~l~~~~~----------------dg~i~i~d~~~~~~~~~~~~~~~-----  234 (290)
                                     ..+ ...++.+...+++.+..                ...+.-.|+++++.+..++....     
T Consensus       219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~  298 (571)
T d2ad6a1         219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF  298 (571)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred             ccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccc
Confidence                           111 23456676666666544                34677889999998887775321     


Q ss_pred             -cccCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910          235 -HTEGLTCLTISADST---LALSGSKDGSVHMVNITTGKVVSSLV  275 (290)
Q Consensus       235 -~~~~v~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~  275 (290)
                       .........+..+++   .++.++.+|.++++|..+|+++...+
T Consensus       299 D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~  343 (571)
T d2ad6a1         299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeec
Confidence             011112222222443   56788899999999999999886543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.39  E-value=0.0069  Score=50.96  Aligned_cols=166  Identities=13%  Similarity=0.173  Sum_probs=99.7

Q ss_pred             CcEEEEEccCCeeeeeeccccCCE---------EEEEECCCCC---EEEEEeCCCcEEEEcCCCCceEEEEecCCC-C--
Q 022910           87 DKGFFWRINQGDWASEIQGHKDSV---------SSLAFSMDGQ---LLASGGLDGLVQIWDPSSGNLKCTLEGPGG-G--  151 (290)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i---------~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~--  151 (290)
                      ..|.-.|+.+++.+..++.....+         .-+....+++   .++.++.+|.++++|..+++++........ .  
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            346677888888776554322111         1111222333   577788899999999999988754321110 0  


Q ss_pred             ---------------------------------EEEEEEcCCCCEEEEeeC-----------------------------
Q 022910          152 ---------------------------------VEWVSWHPRGHIVLAGSE-----------------------------  169 (290)
Q Consensus       152 ---------------------------------i~~i~~~~~~~~l~~~~~-----------------------------  169 (290)
                                                       -...+++|+..++++...                             
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                             013456666665554332                             


Q ss_pred             -------CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEE
Q 022910          170 -------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL  242 (290)
Q Consensus       170 -------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  242 (290)
                             .|.|.-||+.+++.+-++... .+..+-.+.-.+.++++|+.||.++.||..+|+.+..+..........  +
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P--~  506 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP--M  506 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--E
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC--E
Confidence                   256888899998877665422 222211222356788899999999999999999998887643222222  3


Q ss_pred             EEcCCCC-EEEEEe
Q 022910          243 TISADST-LALSGS  255 (290)
Q Consensus       243 ~~~~~~~-~l~~~~  255 (290)
                      .+..+|+ ||++..
T Consensus       507 ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         507 TFELAGRQYVAIMA  520 (560)
T ss_dssp             EEEETTEEEEEEEE
T ss_pred             EEEECCEEEEEEEe
Confidence            4444674 555543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.29  E-value=0.01  Score=46.90  Aligned_cols=152  Identities=14%  Similarity=0.160  Sum_probs=93.7

Q ss_pred             CCCCcEEEEecCCC-----------cEEEEEccCCeeeee--e-ccccCCEEEEEECCCCCEEEEEeCC-CcEEEEcCCC
Q 022910           74 PTDATLVATGGGDD-----------KGFFWRINQGDWASE--I-QGHKDSVSSLAFSMDGQLLASGGLD-GLVQIWDPSS  138 (290)
Q Consensus        74 ~~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~--~-~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~  138 (290)
                      +.++++++.|+...           .+.+||..+++....  + ..+........+.++++.++.|+.+ ..+.+||..+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence            33778888776421           377999998765432  1 1233334456788999998888654 6899999987


Q ss_pred             CceEEEEecC-CCCEEEEEEcCCCCEEEEeeCC------CeEEEEECCcccEEEeeec---------C-----CCCeEEE
Q 022910          139 GNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLNMFSG---------H-----GSSVTCG  197 (290)
Q Consensus       139 ~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~---------~-----~~~i~~~  197 (290)
                      ......-... ...-...+..+++++++.|+..      ..+.+||..+.+-...-..         +     ...-..+
T Consensus       108 ~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (387)
T d1k3ia3         108 DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL  187 (387)
T ss_dssp             TEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCE
T ss_pred             CcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEE
Confidence            7654321111 1123456667789999998753      3589999987653221100         0     0011112


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEcCCCCee
Q 022910          198 DFTPDGKTICTGSDDATLRVWNPKSGEN  225 (290)
Q Consensus       198 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~  225 (290)
                      ...++++.++.+...+.+.+++..+...
T Consensus       188 ~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         188 FGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             EECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             EEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            2345677788787788888888877654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=0.026  Score=44.62  Aligned_cols=178  Identities=7%  Similarity=-0.072  Sum_probs=101.8

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCC---------eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQG---------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (290)
                      ...-++.++ ...+++.|+.++ ++|..+..-         .........-..|..++|+-+  .|++.. ++.+..++.
T Consensus        38 ~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~~-~~~l~~~~~  112 (381)
T d1xipa_          38 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVST-RNALYSLDL  112 (381)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEEE-SSEEEEEES
T ss_pred             ccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEEe-CCCEEEEEe
Confidence            355778887 444666666554 667764321         111111112236888999643  455544 566888887


Q ss_pred             CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-----cCCCCeEEEEEcCCCCEEEEEeC
Q 022910          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-----GHGSSVTCGDFTPDGKTICTGSD  211 (290)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~  211 (290)
                      ..-...........++..+.++|.  .++....+|.+.++.+..++......     .-...+.+++|++.|..++++..
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCC
Confidence            765555555555667888888774  56667778999999998876433221     12355777788877777777643


Q ss_pred             CCeEEEE-cCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE
Q 022910          212 DATLRVW-NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG  254 (290)
Q Consensus       212 dg~i~i~-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  254 (290)
                      ++ ..+. ++...   ..+.........+.++.|-.+..++++-
T Consensus       191 ~~-~q~k~~i~~~---~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         191 GE-MEKQFEFSLP---SELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             TE-EEEEEEECCC---HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             Cc-eeeccCCCCc---cccCCCcCCCcceeEEEEecCceEEEEE
Confidence            22 1111 11100   0111111123457888998766666654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.27  E-value=0.0066  Score=51.35  Aligned_cols=82  Identities=13%  Similarity=0.163  Sum_probs=55.3

Q ss_pred             CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC
Q 022910          170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST  249 (290)
Q Consensus       170 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  249 (290)
                      .|.|.-+|+.+++.+-+.... .++..-.++..+.++++|+.||.++.||..+|+.+..+..........  +.+..+|+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~G~  541 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             CCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCE
Confidence            477888999999887766533 222221223357788899999999999999999998887543222222  45556774


Q ss_pred             -EEEEE
Q 022910          250 -LALSG  254 (290)
Q Consensus       250 -~l~~~  254 (290)
                       |+++.
T Consensus       542 qYv~i~  547 (582)
T d1flga_         542 QYLGVT  547 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence             55543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.24  E-value=0.019  Score=48.28  Aligned_cols=82  Identities=13%  Similarity=0.163  Sum_probs=51.3

Q ss_pred             CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC-
Q 022910          171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-  249 (290)
Q Consensus       171 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  249 (290)
                      |.|.-||+.+++.+-+..... +...=.++-.+.++++|+.||.++.||.++|+.+..+..........  +.|..+|+ 
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEE
Confidence            357778888887776554321 11111122257788899999999999999999998887543222222  33444675 


Q ss_pred             EEEEEe
Q 022910          250 LALSGS  255 (290)
Q Consensus       250 ~l~~~~  255 (290)
                      |+++.+
T Consensus       534 Yv~v~~  539 (573)
T d1kb0a2         534 YVSVAV  539 (573)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            544433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.21  E-value=0.014  Score=49.22  Aligned_cols=61  Identities=21%  Similarity=0.342  Sum_probs=45.8

Q ss_pred             CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS  276 (290)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  276 (290)
                      .|.|.-+|+.+++.........    ++..-.++..+.++++|+.||.++.+|..+|+.+.++..
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~----p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEcCCCCcEEeecCCCC----CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            4678899999999887776422    221111233577888999999999999999999998874

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.027  Score=44.53  Aligned_cols=140  Identities=11%  Similarity=0.087  Sum_probs=88.5

Q ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEcCC-----------CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEE
Q 022910          108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPS-----------SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW  176 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-----------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~  176 (290)
                      ....-+++++...++++|+.++ +.|..+.           .........  -..|..++|+.+  .|++.. ++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~~-~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVST-RNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEEE-SSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEEe-CCCEEEE
Confidence            3455678887777888888765 5565421           111112222  225889999744  455543 4678888


Q ss_pred             ECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC--CcccCeEEEEEcCCCCEEEEE
Q 022910          177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLALSG  254 (290)
Q Consensus       177 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~  254 (290)
                      +...............++..+.++|.  .++....++.+.++++..++......+..  .....+.+++|++.|..++++
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe
Confidence            87765555554455677888888774  57777788999999998876533322100  023557778888877777776


Q ss_pred             e
Q 022910          255 S  255 (290)
Q Consensus       255 ~  255 (290)
                      .
T Consensus       189 ~  189 (381)
T d1xipa_         189 R  189 (381)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.89  E-value=0.061  Score=41.91  Aligned_cols=196  Identities=13%  Similarity=0.144  Sum_probs=116.0

Q ss_pred             CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEEC------CCCCEEEEEeC--C--CcEEEEcCCC-CceEEE
Q 022910           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS------MDGQLLASGGL--D--GLVQIWDPSS-GNLKCT  144 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~l~~~~~--d--g~i~i~d~~~-~~~~~~  144 (290)
                      ...+++...+.+-|++|++. |+.+..+.  .+.+..+..-      ....-|++++.  +  .+|.+|.+.. ...+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            44577666777779999985 66666654  3455555442      12223555542  2  3577787652 223333


Q ss_pred             EecC-------CCCEEEEEE--cCC-CC-EEEEeeCCCeEEEEECCc---c----cEEEeeecCCCCeEEEEEcCCCCEE
Q 022910          145 LEGP-------GGGVEWVSW--HPR-GH-IVLAGSEDSTVWMWNADR---A----AYLNMFSGHGSSVTCGDFTPDGKTI  206 (290)
Q Consensus       145 ~~~~-------~~~i~~i~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~----~~~~~~~~~~~~i~~~~~~~~~~~l  206 (290)
                      +...       ...+..+|+  ++. +. ++++....|.+..|.+..   +    +.++.+. ....+..+.+.+....|
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSL  194 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcE
Confidence            3221       123555666  554 43 567777889998887632   2    3445554 45678999999988999


Q ss_pred             EEEeCCCeEEEEcCC--CCeeeEEE--eCCCCcccCeEEEEEcC--C--CCEEEEEeCCCcEEEEEcCC-CcEEEEEc
Q 022910          207 CTGSDDATLRVWNPK--SGENIHVI--RGHPYHTEGLTCLTISA--D--STLALSGSKDGSVHMVNITT-GKVVSSLV  275 (290)
Q Consensus       207 ~~~~~dg~i~i~d~~--~~~~~~~~--~~~~~~~~~v~~~~~~~--~--~~~l~~~~~dg~i~~wd~~~-~~~~~~~~  275 (290)
                      +++-.+..|..++..  .......+  ........-+-.|+.-.  +  |-+|++.-.+++..+||..+ .+.+.+|.
T Consensus       195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            999888877776654  22221221  11111345566776543  2  33444444578999999876 46776664

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.88  E-value=0.066  Score=42.00  Aligned_cols=160  Identities=14%  Similarity=0.186  Sum_probs=94.4

Q ss_pred             CEEEEEECCCCCEEEEEeCCC-----------cEEEEcCCCCceEE--EEe-cCCCCEEEEEEcCCCCEEEEeeCC-CeE
Q 022910          109 SVSSLAFSMDGQLLASGGLDG-----------LVQIWDPSSGNLKC--TLE-GPGGGVEWVSWHPRGHIVLAGSED-STV  173 (290)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~--~~~-~~~~~i~~i~~~~~~~~l~~~~~d-g~i  173 (290)
                      ++.......+++.++.|+...           .+.+||..+++...  ... .+.......++.+++++++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            334444556777777776421           36789998876432  222 222223456788899999998765 579


Q ss_pred             EEEECCcccEEEeeec-CCCCeEEEEEcCCCCEEEEEeCC------CeEEEEcCCCCeeeEEEeCCCCc-----------
Q 022910          174 WMWNADRAAYLNMFSG-HGSSVTCGDFTPDGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYH-----------  235 (290)
Q Consensus       174 ~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~-----------  235 (290)
                      .+||..+......-.. ....-.+.+..+++++++.|+..      ..+.+||..+.+= ..+......           
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~  179 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW-TSLPNAKVNPMLTADKQGLY  179 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE-EEETTSCSGGGCCCCTTGGG
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce-eecCCCccccccccccccee
Confidence            9999987764332211 11223456677899999988753      3689999987642 222211000           


Q ss_pred             -ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 022910          236 -TEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (290)
Q Consensus       236 -~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  269 (290)
                       ...-..+...++|+.++.++..+.+.+++..+..
T Consensus       180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             eccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence             0001112233467777777777777777776554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.75  E-value=0.08  Score=41.12  Aligned_cols=183  Identities=12%  Similarity=0.082  Sum_probs=102.6

Q ss_pred             EEEEEECCCCCcEEEEec------------CCCcEEEEEccCCeeee-eec--c-----ccCCEEEEEE--CCCCC-EEE
Q 022910           67 VYSVACSPTDATLVATGG------------GDDKGFFWRINQGDWAS-EIQ--G-----HKDSVSSLAF--SMDGQ-LLA  123 (290)
Q Consensus        67 v~~~~~~~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~-~~~--~-----~~~~i~~~~~--~~~~~-~l~  123 (290)
                      .-.|+..| ++..+++++            ..|.|.++|+.+.+... .+.  +     ..-....+.+  .+++. +|+
T Consensus        37 ~EDi~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          37 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCEEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            34577788 555554443            14889999987653221 111  1     1112344444  45565 455


Q ss_pred             EEe---CCCcEEEEcCCCCceE----EEEec-CCCCEEEEEEcCCCCEEEEee-----------------CCCeEEEEEC
Q 022910          124 SGG---LDGLVQIWDPSSGNLK----CTLEG-PGGGVEWVSWHPRGHIVLAGS-----------------EDSTVWMWNA  178 (290)
Q Consensus       124 ~~~---~dg~i~i~d~~~~~~~----~~~~~-~~~~i~~i~~~~~~~~l~~~~-----------------~dg~i~i~d~  178 (290)
                      +..   ...+|.+|++......    .++.. .....+.+++..++..++|-.                 ..+.+..|+.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            543   3567888887544322    12222 224578898888888888721                 1234444544


Q ss_pred             CcccEEEeeecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEE
Q 022910          179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSG  254 (290)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  254 (290)
                        ++...... .-.....|+++|++++|+++ +..+.|++|++............. .....-.+.+.+ +|.+.+++
T Consensus       196 --~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         196 --NDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             --SCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred             --CceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence              33222222 23467899999999877654 567889999987554333222111 345567788876 45554443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.41  E-value=0.12  Score=40.21  Aligned_cols=142  Identities=10%  Similarity=0.151  Sum_probs=88.5

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcC------CCCEEEEeeC--C--CeEEEEECCc-ccEEEe
Q 022910          118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP------RGHIVLAGSE--D--STVWMWNADR-AAYLNM  186 (290)
Q Consensus       118 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~------~~~~l~~~~~--d--g~i~i~d~~~-~~~~~~  186 (290)
                      ...+++.....+-|++||+. |+.+..+.  .+.+..+..-.      ....|++++.  +  ..|.+|.+.. ...+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            45567776666669999985 77776654  34566665432      2223555553  2  3577887753 223333


Q ss_pred             eecC-------CCCeEEEEE--cCC-CC-EEEEEeCCCeEEEEcCC---CC----eeeEEEeCCCCcccCeEEEEEcCCC
Q 022910          187 FSGH-------GSSVTCGDF--TPD-GK-TICTGSDDATLRVWNPK---SG----ENIHVIRGHPYHTEGLTCLTISADS  248 (290)
Q Consensus       187 ~~~~-------~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~~~~v~~~~~~~~~  248 (290)
                      +...       ...++.+|+  +|. +. ++++...+|.+..|.+.   .+    +.++.+.    ....+..|.+.+..
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~----~~~q~EGCVvDde~  191 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK----MNSQTEGMAADDEY  191 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE----CSSCEEEEEEETTT
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC----CCCccceEEEeCCC
Confidence            3221       123566776  664 44 45677789999888663   22    2333444    45678899999988


Q ss_pred             CEEEEEeCCCcEEEEEcC
Q 022910          249 TLALSGSKDGSVHMVNIT  266 (290)
Q Consensus       249 ~~l~~~~~dg~i~~wd~~  266 (290)
                      ..|+.+-.+..|+.++..
T Consensus       192 ~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             TEEEEEETTTEEEEEESS
T ss_pred             CcEEEecCccceEEEEec
Confidence            899999888777777654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.99  E-value=0.23  Score=38.38  Aligned_cols=153  Identities=16%  Similarity=0.089  Sum_probs=86.8

Q ss_pred             EEEEECCCCCEEEEEeC------------CCcEEEEcCCCCceEE-EE--ecC-----CCCEEEEEE--cCCCC-EEEEe
Q 022910          111 SSLAFSMDGQLLASGGL------------DGLVQIWDPSSGNLKC-TL--EGP-----GGGVEWVSW--HPRGH-IVLAG  167 (290)
Q Consensus       111 ~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~-~~--~~~-----~~~i~~i~~--~~~~~-~l~~~  167 (290)
                      -.|...|+|..+++++.            .|.|.++|+.+.+... .+  .+.     .-....+.+  .+++. +|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            35666777765555431            4889999987654322 21  111     012344443  34555 44444


Q ss_pred             e---CCCeEEEEECCccc-E---EEeeec-CCCCeEEEEEcCCCCEEEEEe-----------------CCCeEEEEcCCC
Q 022910          168 S---EDSTVWMWNADRAA-Y---LNMFSG-HGSSVTCGDFTPDGKTICTGS-----------------DDATLRVWNPKS  222 (290)
Q Consensus       168 ~---~dg~i~i~d~~~~~-~---~~~~~~-~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~  222 (290)
                      .   ...+|.+|++.... .   +..+.. .......+++..++.+++|-.                 .-+.|..|+.. 
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~-  196 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-  196 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS-
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC-
Confidence            3   34678888875432 1   122221 234568888888888777731                 12344445543 


Q ss_pred             CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCc
Q 022910          223 GENIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGK  269 (290)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~  269 (290)
                       .......    .-...+.++++|++++|+++ +..++|++|++...+
T Consensus       197 -~~~~~~~----~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         197 -DVRVVAE----GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             -CEEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             -ceEEEcC----CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence             3222222    34568899999999877665 457789999987543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.99  E-value=0.2  Score=37.70  Aligned_cols=190  Identities=10%  Similarity=0.125  Sum_probs=112.9

Q ss_pred             CEEEEEECCCCCcEEEEecCCCcEEEEEccCC-eeeeeecccc----CCEEEEEECCCCCEEEEEeC-------CCcEEE
Q 022910           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASEIQGHK----DSVSSLAFSMDGQLLASGGL-------DGLVQI  133 (290)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~-------dg~i~i  133 (290)
                      +|.--.|-.  ...|+..+ +..|+-|++... .+.+.+..|.    ..|..-..+++.++++..+-       .|.+.+
T Consensus       104 ~VvfWkWis--~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQL  180 (327)
T d1utca2         104 DVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL  180 (327)
T ss_dssp             CCCEEEESS--SSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEEEEecC--CCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEE
Confidence            444444543  23343333 357999998542 3455554443    46777788899998766532       477889


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCC---CEEEEe---eCCCeEEEEECCccc----E-----EEeee---cCCCCeE
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRG---HIVLAG---SEDSTVWMWNADRAA----Y-----LNMFS---GHGSSVT  195 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~---~~dg~i~i~d~~~~~----~-----~~~~~---~~~~~i~  195 (290)
                      |..+.+ ..+.+.+|.+....+.+.-+.   .+|+.+   ...+.+.+.++....    .     +..+-   ....-..
T Consensus       181 YS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPv  259 (327)
T d1utca2         181 YSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  259 (327)
T ss_dssp             EETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEE
T ss_pred             EEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEE
Confidence            998754 345666665433333332111   133332   223678888886521    1     11111   1234567


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910          196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (290)
Q Consensus       196 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  262 (290)
                      ++..++.-..++.-+.-|.|++||+.++.++..-+-   ....|-..+-.....-+++....|.|..
T Consensus       260 amqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRI---s~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         260 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             EEEeeccCCEEEEEecCcEEEEEEcccccEEEEeec---CCCceEEeccCCCCceEEEECCCCeEEE
Confidence            888999888999999999999999999998877664   3445544444444444445556666543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.75  E-value=0.37  Score=38.83  Aligned_cols=103  Identities=17%  Similarity=0.245  Sum_probs=60.7

Q ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe--------cCCCCEEEEEEcCC---CCEEEEeeC-------
Q 022910          108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE--------GPGGGVEWVSWHPR---GHIVLAGSE-------  169 (290)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~i~~i~~~~~---~~~l~~~~~-------  169 (290)
                      ...++|+|.|+++.|++--..|.|++++..+++......        ...+....|+++|+   ..+++....       
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            456899999999988876557999999988776543221        11246789999995   334444211       


Q ss_pred             C----C--eEEEEECCccc-------E-EEeee-cCCCCeEEEEEcCCCCEEEEEe
Q 022910          170 D----S--TVWMWNADRAA-------Y-LNMFS-GHGSSVTCGDFTPDGKTICTGS  210 (290)
Q Consensus       170 d----g--~i~i~d~~~~~-------~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~  210 (290)
                      +    .  .+..+......       . +..+. ........|.|.|++.++++.+
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~G  162 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEec
Confidence            0    1  13333322211       1 11111 1123457899999998777655

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.13  Score=38.41  Aligned_cols=192  Identities=15%  Similarity=0.144  Sum_probs=87.9

Q ss_pred             CCcEEEEecC---------CCcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCCCc-----EEEEcCCCC
Q 022910           76 DATLVATGGG---------DDKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDGL-----VQIWDPSSG  139 (290)
Q Consensus        76 ~~~~l~~~~~---------dg~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~  139 (290)
                      ++.+++.|+.         -..+.+||..+.+....  +........++.+  +++.++.++.++.     ...++..+.
T Consensus        50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~  127 (288)
T d1zgka1          50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  127 (288)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecccc--ceeeEEecceecccccceeeeeccccC
Confidence            4456666653         13567788776554432  1111111122222  5555555544333     344665554


Q ss_pred             ceEEEEecCCC-CEEEEEEcCCCCEEEEeeCC-----CeEEEEECCcccEEEeeec-CCCCeEEEEEcCCCCEEEEEeCC
Q 022910          140 NLKCTLEGPGG-GVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLNMFSG-HGSSVTCGDFTPDGKTICTGSDD  212 (290)
Q Consensus       140 ~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d  212 (290)
                      .....-..... .-.++... .+..++.|+.+     ..+..||..+.+....-.. ......++... .+.+++.|+.+
T Consensus       128 ~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~  205 (288)
T d1zgka1         128 EWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYD  205 (288)
T ss_dssp             EEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred             ccccccccccccccceeeee-eecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCcc
Confidence            43221111111 01112222 45566666543     3578888876643322111 11111122222 34555555443


Q ss_pred             -----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCc--EEEEE
Q 022910          213 -----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGK--VVSSL  274 (290)
Q Consensus       213 -----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~--~~~~~  274 (290)
                           ..+..||..+.+.. .+...+........+.+  ++++++.|+.++     .|.+||+.+.+  .+..+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~-~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  276 (288)
T d1zgka1         206 GQDQLNSVERYDVETETWT-FVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM  276 (288)
T ss_dssp             SSSBCCCEEEEETTTTEEE-ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC
T ss_pred             ccccccceeeeeecceeee-cccCccCcccceEEEEE--CCEEEEEecCCCCeecceEEEEECCCCEEEECCCC
Confidence                 24677787765532 22222111222223222  678888877654     48899998653  45444

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.18  E-value=0.33  Score=34.58  Aligned_cols=191  Identities=15%  Similarity=0.156  Sum_probs=105.7

Q ss_pred             CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCC--CEEEEE------eCCCcEEEEcCCCCceEEEEec
Q 022910           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG--QLLASG------GLDGLVQIWDPSSGNLKCTLEG  147 (290)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~------~~dg~i~i~d~~~~~~~~~~~~  147 (290)
                      +.++++++...|.+.++-+..++.+.--+   .+|.... .|..  .++..+      -.-..|++-++......+.+..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence            55688888888999999988776555333   2322211 1111  122221      1112344444443222333333


Q ss_pred             CC-CCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE--eeec-------CCCCeEEEEE-cCCCCEEEEEeC-CCeE
Q 022910          148 PG-GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN--MFSG-------HGSSVTCGDF-TPDGKTICTGSD-DATL  215 (290)
Q Consensus       148 ~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~-------~~~~i~~~~~-~~~~~~l~~~~~-dg~i  215 (290)
                      .. -.|.++++. +.+..++|+......+|-++.++...  .+.+       ....|..+.+ .+..+-|+++.- .|.+
T Consensus       101 pk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         101 VKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             SCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred             CceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence            33 346666654 45677788887888888887775432  2221       1233444443 334444666655 7888


Q ss_pred             EEEcCCCCeeeEEEe----------------------CC---------C------CcccCeEEEEEcCCCCEEEEEeCCC
Q 022910          216 RVWNPKSGENIHVIR----------------------GH---------P------YHTEGLTCLTISADSTLALSGSKDG  258 (290)
Q Consensus       216 ~i~d~~~~~~~~~~~----------------------~~---------~------~~~~~v~~~~~~~~~~~l~~~~~dg  258 (290)
                      +|++...|.......                      ..         +      .....|+.+-+.|++++++.+-.||
T Consensus       180 ri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG  259 (313)
T d2hu7a1         180 RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG  259 (313)
T ss_dssp             EEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             EEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCC
Confidence            888876543211110                      00         0      0233466777999999999999999


Q ss_pred             cEEEEEcCCCcEEEE
Q 022910          259 SVHMVNITTGKVVSS  273 (290)
Q Consensus       259 ~i~~wd~~~~~~~~~  273 (290)
                      .=+++.  +|+.+..
T Consensus       260 ~s~lF~--nGk~in~  272 (313)
T d2hu7a1         260 RSAVFI--DGERVEA  272 (313)
T ss_dssp             EEEEEE--TTEEECC
T ss_pred             chheee--cceEecC
Confidence            999887  4555443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.08  E-value=1.7  Score=34.76  Aligned_cols=111  Identities=12%  Similarity=0.135  Sum_probs=63.0

Q ss_pred             eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee--e------ccccCCEEEEEECCC---CCEEEEE
Q 022910           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--I------QGHKDSVSSLAFSMD---GQLLASG  125 (290)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~------~~~~~~i~~~~~~~~---~~~l~~~  125 (290)
                      +..+...-..-++|+|.| ++.+|++-...|.|++++..++.....  +      ..-......|+|+|+   ..+|+..
T Consensus        19 ~~~ia~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs   97 (450)
T d1crua_          19 KKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (450)
T ss_dssp             EEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             EEEEECCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence            333433345677999999 778887765679999998777653321  1      112356889999985   3444443


Q ss_pred             eC-------C----C--cEEEEcCCCCce--------EEEEe-cCCCCEEEEEEcCCCCEEEEee
Q 022910          126 GL-------D----G--LVQIWDPSSGNL--------KCTLE-GPGGGVEWVSWHPRGHIVLAGS  168 (290)
Q Consensus       126 ~~-------d----g--~i~i~d~~~~~~--------~~~~~-~~~~~i~~i~~~~~~~~l~~~~  168 (290)
                      ..       +    .  .+..+.......        +..+. ........|.|.|++.++++.+
T Consensus        98 yt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~G  162 (450)
T d1crua_          98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (450)
T ss_dssp             EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             EecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEec
Confidence            11       1    1  122333222211        11111 1112467899999998776655

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=91.76  E-value=1.7  Score=31.83  Aligned_cols=67  Identities=18%  Similarity=0.104  Sum_probs=36.2

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS  138 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  138 (290)
                      ..|..|+.-.  ...++ -. ||.|..|-......+-.-......|..+..  ...+.+.- .++.+..|....
T Consensus        26 ~~i~~va~G~--~h~~a-l~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~--G~~~~~al-~dg~v~~wG~~~   92 (273)
T d1jtdb_          26 SGVDAIAGGY--FHGLA-LK-GGKVLGWGANLNGQLTMPAATQSGVDAIAA--GNYHSLAL-KDGEVIAWGGNE   92 (273)
T ss_dssp             SSEEEEEECS--SEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEE--CSSEEEEE-ETTEEEEEECCT
T ss_pred             CCcEEEEccC--CEEEE-EE-CCEEEEEeCCCCCceeeeecccccceEEec--CCCceeee-eeeeeeccCCCc
Confidence            4588887642  23343 34 799999977654322222223344555554  22233323 378898887543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=2.2  Score=31.07  Aligned_cols=183  Identities=15%  Similarity=0.187  Sum_probs=81.6

Q ss_pred             cEEEEecCCC----cEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeC---------CCcEEEEcCCCCceE
Q 022910           78 TLVATGGGDD----KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGL---------DGLVQIWDPSSGNLK  142 (290)
Q Consensus        78 ~~l~~~~~dg----~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~  142 (290)
                      .+.+.|+.++    .+.+||+.+++....  +.........+.+  ++..++.|+.         -..+.+||..+.+..
T Consensus         6 ~iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~   83 (288)
T d1zgka1           6 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS   83 (288)
T ss_dssp             CEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             EEEEECCcCCCCCceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhccccccccc
Confidence            3444554432    578999988765442  3222222222222  4555565542         245778888766543


Q ss_pred             EEEecCC--CCEEEEEEcCCCCEEEEeeCCCe-----EEEEECCcccEEEeeec--CCCCeEEEEEcCCCCEEEEEeCC-
Q 022910          143 CTLEGPG--GGVEWVSWHPRGHIVLAGSEDST-----VWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDD-  212 (290)
Q Consensus       143 ~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-  212 (290)
                      ..-....  ....++.+  +++.++.++.++.     ...++..+.........  .......+ .. .+.+++.|+.+ 
T Consensus        84 ~~~~~p~~r~~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~-~~~~~~~GG~~~  159 (288)
T d1zgka1          84 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVA-VL-NRLLYAVGGFDG  159 (288)
T ss_dssp             ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE-EE-TTEEEEECCBCS
T ss_pred             ccccccceecceecccc--ceeeEEecceecccccceeeeeccccCccccccccccccccceee-ee-eecceEecCccc
Confidence            3211111  11122222  5666666654333     44566665543222111  11112222 22 34455555443 


Q ss_pred             ----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 022910          213 ----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK  269 (290)
Q Consensus       213 ----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~  269 (290)
                          ..+..||..+.+-. ...... ......++... .+.+++.|+.+     ..+..++..+.+
T Consensus       160 ~~~~~~~~~~d~~~~~~~-~~~~~~-~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~  222 (288)
T d1zgka1         160 TNRLNSAECYYPERNEWR-MITAMN-TIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET  222 (288)
T ss_dssp             SCBCCCEEEEETTTTEEE-ECCCCS-SCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ccccceEEEeeccccccc-cccccc-cccccccccce-eeeEEEecCccccccccceeeeeeccee
Confidence                35778888765432 222111 11111122222 34555555443     246677765543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.56  E-value=2  Score=30.44  Aligned_cols=146  Identities=19%  Similarity=0.299  Sum_probs=86.7

Q ss_pred             cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee--eeccc-------cCCEEEEEEC-CCCCEEEEEeC-CCcEEE
Q 022910           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS--EIQGH-------KDSVSSLAFS-MDGQLLASGGL-DGLVQI  133 (290)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~-------~~~i~~~~~~-~~~~~l~~~~~-dg~i~i  133 (290)
                      -.|.++++.  +.+.+++|+......+|-+..++...  .+.+.       ..-|..+.+. ++.+-|+++.. .|.++|
T Consensus       104 vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri  181 (313)
T d2hu7a1         104 MRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV  181 (313)
T ss_dssp             BEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred             EEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence            567777775  67888899888889999998887543  23221       2234444432 23333444444 666666


Q ss_pred             EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC----CCeEEEEECCcccEEEeee-------cCCCCeEEEEEcCC
Q 022910          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE----DSTVWMWNADRAAYLNMFS-------GHGSSVTCGDFTPD  202 (290)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~  202 (290)
                      ++...|.           ++...+.+..+. +++..    ..-| -+|++.++.-+.--       -....|+-+-+.|+
T Consensus       182 ~tpkeGS-----------~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pd  248 (313)
T d2hu7a1         182 FDSGEGS-----------FSSASISPGMKV-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPD  248 (313)
T ss_dssp             ECCSSEE-----------EEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTT
T ss_pred             ecCCCCc-----------ccceeEccCcee-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCCC
Confidence            6655443           444444443333 33322    1223 45777665433211       12345677779999


Q ss_pred             CCEEEEEeCCCeEEEEcCCCCeeeE
Q 022910          203 GKTICTGSDDATLRVWNPKSGENIH  227 (290)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~~~~~  227 (290)
                      +++++.+-.||.=++|.  +|+.+.
T Consensus       249 d~L~iiakrdG~s~lF~--nGk~in  271 (313)
T d2hu7a1         249 GRLAVVARREGRSAVFI--DGERVE  271 (313)
T ss_dssp             SCEEEEEEETTEEEEEE--TTEEEC
T ss_pred             CcEEEEEecCCchheee--cceEec
Confidence            99999999999999986  455443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=90.09  E-value=2.2  Score=31.27  Aligned_cols=163  Identities=14%  Similarity=0.079  Sum_probs=77.1

Q ss_pred             CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEE
Q 022910           86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL  165 (290)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~  165 (290)
                      ++.+..|.................+..++...  ...+.. .|+.+..|.................|..++-.  ...++
T Consensus        82 dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~--~~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~  156 (273)
T d1jtdb_          82 DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL  156 (273)
T ss_dssp             TTEEEEEECCTTSTTCCCGGGGSSCCEEEEET--TEEEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE
T ss_pred             eeeeeccCCCcceeeccccccccceeEEeeec--cccccc-ccccceecccCCCCceeeeccCCceEEEEecc--ceeee
Confidence            67888887543221111111122344444322  222222 47888888654332221111122345554432  22233


Q ss_pred             EeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC-eeeEEEeCCCCcccCeEEEEE
Q 022910          166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTI  244 (290)
Q Consensus       166 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~  244 (290)
                       ...++.++.|-................|..|+....  ..+.-. ||.|+.|=.... +......    ....|..|+-
T Consensus       157 -~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n~~Gql~~~~~----~~~~v~~I~~  228 (273)
T d1jtdb_         157 -AVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWGDNRYKQTTVPTE----ALSGVSAIAS  228 (273)
T ss_dssp             -EEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCCGG----GGSSCCEEEE
T ss_pred             -eecccceeEeecccCCcccccccccCCccceeccce--eeEEEe-cCcEEEcCCCCCCccCCCcc----CCCCcEEEEe
Confidence             334688888876543222222223456777766432  222223 799999954322 2211111    2345666665


Q ss_pred             cCCCCEEEEEeCCCcEEEEE
Q 022910          245 SADSTLALSGSKDGSVHMVN  264 (290)
Q Consensus       245 ~~~~~~l~~~~~dg~i~~wd  264 (290)
                      ... ..++.  .||.|+.|=
T Consensus       229 G~~-~~~~l--~~g~v~~WG  245 (273)
T d1jtdb_         229 GEW-YSLAL--KNGKVIAWG  245 (273)
T ss_dssp             CSS-CEEEE--ETTEEEEES
T ss_pred             Ccc-eEEEE--ECCEEEEEC
Confidence            433 23333  389999994

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.02  E-value=6.5  Score=30.78  Aligned_cols=198  Identities=9%  Similarity=0.040  Sum_probs=101.6

Q ss_pred             EEEEECCCCCcEEEEec---------------CCCcEEEEEccCCee--eeeecc--ccCCEEEEEECCCCCEEEEEeC-
Q 022910           68 YSVACSPTDATLVATGG---------------GDDKGFFWRINQGDW--ASEIQG--HKDSVSSLAFSMDGQLLASGGL-  127 (290)
Q Consensus        68 ~~~~~~~~~~~~l~~~~---------------~dg~i~iw~~~~~~~--~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-  127 (290)
                      ..++|.+++..++.+.-               ....|.++.+.+...  ...+..  ....+..+..++++++++.... 
T Consensus       174 ~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~  253 (430)
T d1qfma1         174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE  253 (430)
T ss_dssp             CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred             cceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeec
Confidence            46789985555555531               122577777766432  222332  2334667788999998765432 


Q ss_pred             --CCc--EEEEcCCCCc--------eEEEEecCCCCEEEEEEcCCCCEEEEee---CCCeEEEEECCcccE---EEeeec
Q 022910          128 --DGL--VQIWDPSSGN--------LKCTLEGPGGGVEWVSWHPRGHIVLAGS---EDSTVWMWNADRAAY---LNMFSG  189 (290)
Q Consensus       128 --dg~--i~i~d~~~~~--------~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~  189 (290)
                        ...  +.+.++....        ....+.........+. +..+.+++...   .++.|...++.....   ...+..
T Consensus       254 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~  332 (430)
T d1qfma1         254 GCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE  332 (430)
T ss_dssp             SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECC
T ss_pred             cCCccEEEEEeeCCCcccccccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecc
Confidence              233  3444443221        1222332333333333 22333333332   246777777765422   222333


Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCC--eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE-eC---CCcEEE
Q 022910          190 HGSSVTCGDFTPDGKTICTGS-DDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-SK---DGSVHM  262 (290)
Q Consensus       190 ~~~~i~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~---dg~i~~  262 (290)
                      +...+..-.+...+.+|+... .++  .|+++++.++........   ....+..+...++...+... ++   =.+++.
T Consensus       333 ~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~---~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~  409 (430)
T d1qfma1         333 HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL---EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH  409 (430)
T ss_dssp             CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC---CSSEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred             cCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCC---CCceEeeccCCCCCCEEEEEEcCCCCCCeEEE
Confidence            444444333433455666544 454  588899988776544332   23445555555554433332 22   368999


Q ss_pred             EEcCCCc
Q 022910          263 VNITTGK  269 (290)
Q Consensus       263 wd~~~~~  269 (290)
                      ||+.+++
T Consensus       410 ~Dl~t~~  416 (430)
T d1qfma1         410 CDLTKEE  416 (430)
T ss_dssp             EETTSSS
T ss_pred             EECCCCC
Confidence            9998875