Citrus Sinensis ID: 022918

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccEEccccEEEEEEEcccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEEEEcccccccccEEEEEccccEEEEEEEccEEEEEcccccccccccccccccccccccccEEEEEEEEEccccHHcccccccccccccEEEEEEEccccEEEEEEEcccccccccEEEEEEEEEc
cccHHHHccccHHHHccccccccHHHHHcccccccccccccccHHHHHHccccccccEEEEccccccccHHHHHHHHHHHcccccccHHEEccccEEEEEccccccccHHHccccccccccEEEEccEEcccccccccEEEccccccccccccccccccEEEEEEEEcccHHHcccEEEEEccccEcEEEEEEccEEEEEccccccccEEEcccccccccccccEEEEEEEEccccHHHHEcccEEEccEEccccEEEEEccccEEEEEccEEEcccccEEEEcEEEEEc
maslvgqlpfalenangykvwedpsfikwrkrdphvtlrchdsvegSLKYWYERNKvdisvsnsavwdddAVHEALTSAAfwtnglpfvkslsghwkfflassppdvplnfhkssfqdskweaipvpsnwqmhgfdrpiytnvvypfpldppnvpaenptgcyrtyfhipkewqgrRILLHFEAVDSAFCAwingvpvgysqdsrlpaefeisdycyphgsdkknvLAVQVFrwsdgsyledqdhwwlsgIHRDVLLLAKPQVFIADYFfksnlaedfsladIQVNTCQL
MASLVGQLPfalenangykvwedpsfikwrkrdphvtlrchdsvegslkYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
*****GQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVN****
**************ANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
*ASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTCQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query290 2.2.26 [Sep-21-2011]
A5F5U6 1024 Beta-galactosidase OS=Vib yes no 0.789 0.223 0.423 7e-53
A1SWB8 1035 Beta-galactosidase OS=Psy yes no 0.706 0.198 0.516 1e-52
Q56307 1084 Beta-galactosidase OS=The yes no 0.651 0.174 0.5 2e-52
Q7MG04 1031 Beta-galactosidase OS=Vib yes no 0.617 0.173 0.550 5e-52
Q8D4H3 1032 Beta-galactosidase OS=Vib yes no 0.617 0.173 0.540 7e-51
B4S2K9 1041 Beta-galactosidase OS=Alt yes no 0.662 0.184 0.522 9e-51
Q6LL68 1030 Beta-galactosidase OS=Pho yes no 0.624 0.175 0.545 4e-50
P81650 1039 Beta-galactosidase OS=Pse yes no 0.672 0.187 0.529 8e-50
A4W7D2 1028 Beta-galactosidase OS=Ent yes no 0.820 0.231 0.406 4e-48
A9MQ82 1025 Beta-galactosidase OS=Sal N/A no 0.662 0.187 0.497 1e-47
>sp|A5F5U6|BGAL_VIBC3 Beta-galactosidase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=lacZ PE=3 SV=2 Back     alignment and function desciption
 Score =  207 bits (527), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 113/267 (42%), Positives = 149/267 (55%), Gaps = 38/267 (14%)

Query: 21  WEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAA 80
           W++P  +KW  R PHV L  + + + +        ++D+  +                  
Sbjct: 13  WQNPHIVKWHCRTPHVPLHSYRTEQEA--------RLDVGGNR----------------- 47

Query: 81  FWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIY 140
                    +SL+G W+F L   P  V        F DS W  IPVPSNWQM GFD+PIY
Sbjct: 48  ---------QSLNGQWRFALFEKPEAVEPAVIDPDFDDSAWAHIPVPSNWQMQGFDKPIY 98

Query: 141 TNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGY 200
           TN+ YPF   PP VP +NPTGCYR  F + K+     I + F+ V+SAF  W NG  VGY
Sbjct: 99  TNIQYPFADRPPYVPQDNPTGCYRHRFTLEKQALTESIRIVFDGVNSAFHLWCNGHWVGY 158

Query: 201 SQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAK 260
           SQDSRLPAEFE++    P+  + +N+L   V RWSDGSYLEDQD WWLSGI RDV L  K
Sbjct: 159 SQDSRLPAEFELT----PYLQEGENLLVAMVLRWSDGSYLEDQDMWWLSGIFRDVYLYRK 214

Query: 261 PQVFIADYFFKSNLAEDFSLADIQVNT 287
           P + I D+F ++ L   +  A+++V T
Sbjct: 215 PILAIEDFFIRTELDALYQHAELRVET 241

Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) (taxid: 345073)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 3
>sp|A1SWB8|BGAL_PSYIN Beta-galactosidase OS=Psychromonas ingrahamii (strain 37) GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|Q56307|BGAL_THEMA Beta-galactosidase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=lacZ PE=3 SV=2 Back     alignment and function description
>sp|Q7MG04|BGAL_VIBVY Beta-galactosidase OS=Vibrio vulnificus (strain YJ016) GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|Q8D4H3|BGAL_VIBVU Beta-galactosidase OS=Vibrio vulnificus (strain CMCP6) GN=lacZ PE=3 SV=2 Back     alignment and function description
>sp|B4S2K9|BGAL_ALTMD Beta-galactosidase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|Q6LL68|BGAL_PHOPR Beta-galactosidase OS=Photobacterium profundum GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|P81650|BGAL_PSEHA Beta-galactosidase OS=Pseudoalteromonas haloplanktis GN=lacZ PE=1 SV=2 Back     alignment and function description
>sp|A4W7D2|BGAL_ENT38 Beta-galactosidase OS=Enterobacter sp. (strain 638) GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|A9MQ82|BGAL_SALAR Beta-galactosidase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=lacZ PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
225465868 1114 PREDICTED: beta-galactosidase isoform 1 0.982 0.255 0.790 1e-133
255543993 1110 beta-galactosidase, putative [Ricinus co 0.982 0.256 0.780 1e-131
224057302 1110 predicted protein [Populus trichocarpa] 0.975 0.254 0.782 1e-131
356548875 1120 PREDICTED: beta-galactosidase-like [Glyc 0.979 0.253 0.778 1e-130
357515121 1118 Beta Galactosidase-like protein [Medicag 0.972 0.252 0.788 1e-130
359495000 1127 PREDICTED: beta-galactosidase [Vitis vin 0.982 0.252 0.756 1e-130
297820190 1107 hydrolase, hydrolyzing O-glycosyl compou 0.975 0.255 0.778 1e-128
79314957 1108 beta-galactosidase [Arabidopsis thaliana 0.975 0.255 0.775 1e-128
110741846 631 beta Galactosidase - like protein [Arabi 0.982 0.451 0.770 1e-128
22331783 1107 beta-galactosidase [Arabidopsis thaliana 0.975 0.255 0.775 1e-128
>gi|225465868|ref|XP_002266400.1| PREDICTED: beta-galactosidase isoform 1 [Vitis vinifera] gi|296090332|emb|CBI40151.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/287 (79%), Positives = 249/287 (86%), Gaps = 2/287 (0%)

Query: 1   MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDIS 60
           MASLV QL F  +     +VWEDPSFIKWRK+D HV+L CHD+VEGSL+YWYERNKVD  
Sbjct: 1   MASLVAQLAFPSDYNR--RVWEDPSFIKWRKKDAHVSLHCHDTVEGSLRYWYERNKVDFI 58

Query: 61  VSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSK 120
            S+SAVW+DDAV  AL  AAFW  GLPFVKSLSG+WKF+LA  P  VP+NF+ SSF+DS 
Sbjct: 59  ASSSAVWNDDAVVGALDCAAFWVKGLPFVKSLSGYWKFYLAPGPTSVPMNFYDSSFEDST 118

Query: 121 WEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILL 180
           WE +PVPSNWQMHGFDRPIYTN+VYPFPLDPP+VP ENPTGCYRT FHIP EW+GRRILL
Sbjct: 119 WETLPVPSNWQMHGFDRPIYTNIVYPFPLDPPHVPTENPTGCYRTVFHIPHEWKGRRILL 178

Query: 181 HFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYL 240
           HFEAVDSAF AWINGVPVGYSQDSRLPAEFEI+DYC+P GS+KKNVLAVQVFRWSDGSYL
Sbjct: 179 HFEAVDSAFFAWINGVPVGYSQDSRLPAEFEITDYCHPCGSNKKNVLAVQVFRWSDGSYL 238

Query: 241 EDQDHWWLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNT 287
           EDQD WWLSGIHRDVLLLAKPQV+I DYFFKSNL E+FS ADIQV  
Sbjct: 239 EDQDQWWLSGIHRDVLLLAKPQVYIEDYFFKSNLGENFSYADIQVEV 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543993|ref|XP_002513059.1| beta-galactosidase, putative [Ricinus communis] gi|223548070|gb|EEF49562.1| beta-galactosidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224057302|ref|XP_002299206.1| predicted protein [Populus trichocarpa] gi|222846464|gb|EEE84011.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356548875|ref|XP_003542824.1| PREDICTED: beta-galactosidase-like [Glycine max] Back     alignment and taxonomy information
>gi|357515121|ref|XP_003627849.1| Beta Galactosidase-like protein [Medicago truncatula] gi|355521871|gb|AET02325.1| Beta Galactosidase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|359495000|ref|XP_003634896.1| PREDICTED: beta-galactosidase [Vitis vinifera] Back     alignment and taxonomy information
>gi|297820190|ref|XP_002877978.1| hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis lyrata subsp. lyrata] gi|297323816|gb|EFH54237.1| hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79314957|ref|NP_001030858.1| beta-galactosidase [Arabidopsis thaliana] gi|332645710|gb|AEE79231.1| beta-galactosidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110741846|dbj|BAE98865.1| beta Galactosidase - like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22331783|ref|NP_680128.1| beta-galactosidase [Arabidopsis thaliana] gi|20147224|gb|AAM10327.1| At3g54435 [Arabidopsis thaliana] gi|332645709|gb|AEE79230.1| beta-galactosidase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
ASPGD|ASPL0000047652 1023 lacF [Emericella nidulans (tax 0.658 0.186 0.472 1e-46
UNIPROTKB|P00722 1024 lacZ "beta-galactosidase monom 0.668 0.189 0.477 1.4e-44
ASPGD|ASPL0000040482 1030 lacD [Emericella nidulans (tax 0.631 0.177 0.445 1.2e-41
UNIPROTKB|P06864 1030 ebgA "evolved beta-D-galactosi 0.689 0.194 0.406 1.1e-34
UNIPROTKB|Q2KEP6197 MGCH7_ch7g990 "Putative unchar 0.517 0.761 0.448 2.5e-33
ASPGD|ASPL0000002919 891 lacE [Emericella nidulans (tax 0.748 0.243 0.234 2.9e-06
UNIPROTKB|P05804 603 uidA "beta-D-glucuronidase" [E 0.417 0.200 0.268 8.4e-05
ASPGD|ASPL0000047652 lacF [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
 Score = 499 (180.7 bits), Expect = 1.0e-46, P = 1.0e-46
 Identities = 93/197 (47%), Positives = 128/197 (64%)

Query:    90 KSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPL 149
             +SL+G WKF   +SP + P+    ++   ++W+ I VP  WQM G+ RP YTN+ YP P+
Sbjct:    54 QSLNGTWKFHYDASPFEAPI---WNTANTTEWDDIIVPGVWQMQGYGRPQYTNIHYPIPV 110

Query:   150 DPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAE 209
              PPNV   NPTG Y   F +P +W G++I L +E VDSAF  W+NG  VGYSQ SR P+E
Sbjct:   111 TPPNVSYMNPTGSYWREFDVPADWDGQQIRLRYEGVDSAFHVWVNGEEVGYSQGSRNPSE 170

Query:   210 FEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIADYF 269
             F+I+ Y    G+   N LA +V++WSDG+YLEDQD WWLSGI RDV L+  P   I D+F
Sbjct:   171 FDITGYLSSEGT---NTLATRVYQWSDGTYLEDQDQWWLSGIFRDVYLVPFPSSAITDFF 227

Query:   270 FKSNLAEDFSLADIQVN 286
              +  + + F+   ++VN
Sbjct:   228 IQPEVDDGFASGTLKVN 244
GO:0005988 "lactose metabolic process" evidence=RCA
GO:0004565 "beta-galactosidase activity" evidence=RCA
GO:0043169 "cation binding" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0009341 "beta-galactosidase complex" evidence=IEA
UNIPROTKB|P00722 lacZ "beta-galactosidase monomer" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
ASPGD|ASPL0000040482 lacD [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|P06864 ebgA "evolved beta-D-galactosidase, alpha subunit; cryptic gene" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KEP6 MGCH7_ch7g990 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000002919 lacE [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|P05804 uidA "beta-D-glucuronidase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.23LOW CONFIDENCE prediction!
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
PRK09525 1027 PRK09525, lacZ, beta-D-galactosidase; Reviewed 5e-81
PRK10340 1021 PRK10340, ebgA, cryptic beta-D-galactosidase subun 8e-69
pfam02837160 pfam02837, Glyco_hydro_2_N, Glycosyl hydrolases fa 7e-65
COG3250 808 COG3250, LacZ, Beta-galactosidase/beta-glucuronida 3e-44
PRK10150 604 PRK10150, PRK10150, beta-D-glucuronidase; Provisio 3e-14
>gnl|CDD|236548 PRK09525, lacZ, beta-D-galactosidase; Reviewed Back     alignment and domain information 
 Score =  263 bits (675), Expect = 5e-81
 Identities = 102/204 (50%), Positives = 132/204 (64%), Gaps = 11/204 (5%)

Query: 87  PFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYP 146
              +SL+G W+F    +P  VP ++ +    D   + IPVPSNWQ+HG+D PIYTNV YP
Sbjct: 50  QQRQSLNGEWRFSYFPAPEAVPESWLECDLPD--ADTIPVPSNWQLHGYDAPIYTNVTYP 107

Query: 147 FPLDPPNVPAENPTGCYRTYFHIPKEW--QGR-RILLHFEAVDSAFCAWINGVPVGYSQD 203
            P++PP VP ENPTGCY   F + + W   G+ RI+  F+ V+SAF  W NG  VGYSQD
Sbjct: 108 IPVNPPFVPEENPTGCYSLTFTVDESWLQSGQTRII--FDGVNSAFHLWCNGRWVGYSQD 165

Query: 204 SRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQV 263
           SRLPAEF++S +    G   +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP  
Sbjct: 166 SRLPAEFDLSPFLR-AG---ENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTT 221

Query: 264 FIADYFFKSNLAEDFSLADIQVNT 287
            ++D+   + L +DF  A ++V  
Sbjct: 222 QLSDFHITTELDDDFRRAVLEVEA 245

Length = 1027
>gnl|CDD|236673 PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>gnl|CDD|217248 pfam02837, Glyco_hydro_2_N, Glycosyl hydrolases family 2, sugar binding domain Back     alignment and domain information
>gnl|CDD|225789 COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236657 PRK10150, PRK10150, beta-D-glucuronidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 290
PRK09525 1027 lacZ beta-D-galactosidase; Reviewed 100.0
PRK10340 1021 ebgA cryptic beta-D-galactosidase subunit alpha; R 100.0
PF02837167 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sug 100.0
PRK10150 604 beta-D-glucuronidase; Provisional 100.0
COG3250 808 LacZ Beta-galactosidase/beta-glucuronidase [Carboh 99.96
KOG2024297 consensus Beta-Glucuronidase GUSB (glycosylhydrola 99.61
KOG2230 867 consensus Predicted beta-mannosidase [Carbohydrate 99.06
PF13364111 BetaGal_dom4_5: Beta-galactosidase jelly roll doma 97.94
COG3250 808 LacZ Beta-galactosidase/beta-glucuronidase [Carboh 97.81
PLN03059 840 beta-galactosidase; Provisional 97.71
PF08531172 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal d 97.45
KOG0496 649 consensus Beta-galactosidase [Carbohydrate transpo 95.75
PLN03059840 beta-galactosidase; Provisional 95.57
KOG0496649 consensus Beta-galactosidase [Carbohydrate transpo 94.25
PF07691145 PA14: PA14 domain; InterPro: IPR011658 The PA14 do 92.32
PF14683167 CBM-like: Polysaccharide lyase family 4, domain II 89.02
PF03170 605 BcsB: Bacterial cellulose synthase subunit; InterP 88.54
smart00758136 PA14 domain in bacterial beta-glucosidases other g 87.13
PF0830871 PEGA: PEGA domain; InterPro: IPR013229 This domain 86.93
PF03170 605 BcsB: Bacterial cellulose synthase subunit; InterP 86.2
PRK11114 756 cellulose synthase regulator protein; Provisional 82.25
>PRK09525 lacZ beta-D-galactosidase; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=8e-58  Score=482.32  Aligned_cols=242  Identities=43%  Similarity=0.793  Sum_probs=222.8

Q ss_pred             cccccccCCCCCCCCCccccccccCCCCCCccccCCHHHHhhhhhccccccccccCCccccchhhhhhhhhccccCCCCC
Q 022918            8 LPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLP   87 (290)
Q Consensus         8 ~~~~~~~~~~~~~w~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   87 (290)
                      +|..|++....++||||+|+++|||||||+|+||++.++|+..                                 ..|+
T Consensus         4 ~~~~~~~~~~~~~wenp~v~~~nr~~~~a~~~~~~~~~~a~~~---------------------------------~~s~   50 (1027)
T PRK09525          4 IMDSLAQILARRDWENPGVTQLNRLPAHPPFASWRNSEAARDD---------------------------------RPSQ   50 (1027)
T ss_pred             chhHHHhhhccCCccCccccCCCCCCCCCCcCCcCCHHHHhhc---------------------------------cCCc
Confidence            3555555444579999999999999999999999999988742                                 1245


Q ss_pred             ceEecCccceEEeecCCCCCCccccCCCCCCCCCeEecCCcccccccCCCCcccccccCCCCCCCCCCCCCCeEEEEEEE
Q 022918           88 FVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYF  167 (290)
Q Consensus        88 ~~~sLnG~WkF~~~~~~~~~p~~~~~~~~d~~~W~~i~VP~~w~~~g~~~p~y~n~~yp~~~~pp~vp~~~~~gwYrr~F  167 (290)
                      ..++|||.|+|++.+.+...|++|+..++++  |+.|+||++|+++|++.++|+|+.|||+.+||++|.+|++|||||+|
T Consensus        51 ~~~sLnG~W~F~~~~~~~~~~~~~~~~~~~~--w~~I~VP~~w~~~G~~~~~y~n~~ypf~~~~p~vp~~n~~gwYrr~F  128 (1027)
T PRK09525         51 QRQSLNGEWRFSYFPAPEAVPESWLECDLPD--ADTIPVPSNWQLHGYDAPIYTNVTYPIPVNPPFVPEENPTGCYSLTF  128 (1027)
T ss_pred             ceEecCCCcceeECCChhhCcccccccCCCC--CcEeCCCCcHHhcCCCCCccccccCCCCCCCCCCCCcCCeEEEEEEE
Confidence            8899999999999999988999999988765  99999999999999999999999999999999999889999999999


Q ss_pred             EcCCCCCCC-eEEEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEecCCCCcccCCCCC
Q 022918          168 HIPKEWQGR-RILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHW  246 (290)
Q Consensus       168 ~lp~~~~~~-~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~~dgs~ledqd~w  246 (290)
                      ++|+.|.++ +++|+|+||++.++|||||++||+|+++|+||+||||++|++   |+ |+|+|+|.+|++|+|+++||+|
T Consensus       129 ~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~~pfefDIT~~l~~---G~-N~L~V~V~~~sdgs~~e~qd~w  204 (1027)
T PRK09525        129 TVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSRLPAEFDLSPFLRA---GE-NRLAVMVLRWSDGSYLEDQDMW  204 (1027)
T ss_pred             EeChhhcCCCeEEEEECeeccEEEEEECCEEEEeecCCCceEEEEChhhhcC---Cc-cEEEEEEEecCCCCccccCCce
Confidence            999999887 999999999999999999999999999999999999999999   95 9999999999999999999999


Q ss_pred             ccccccccceeeEecCccEEeEEEEEeecCCceeEEEEEEEe
Q 022918          247 WLSGIHRDVLLLAKPQVFIADYFFKSNLAEDFSLADIQVNTC  288 (290)
Q Consensus       247 ~~sGI~RdV~L~~~p~~~I~D~~v~t~ld~~~~~~~l~v~v~  288 (290)
                      +++||||+|+|+++|++||+|++|+++++.+++.|.|+|++.
T Consensus       205 ~~sGI~R~V~L~~~p~~~I~d~~v~t~l~~~~~~a~v~v~v~  246 (1027)
T PRK09525        205 RMSGIFRDVSLLHKPTTQLSDFHITTELDDDFRRAVLEVEAQ  246 (1027)
T ss_pred             eeccccceEEEEEcCCcEEeeeEEEeeccCccceEEEEEEEE
Confidence            999999999999999999999999999998887888877653

>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK10150 beta-D-glucuronidase; Provisional Back     alignment and domain information
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A Back     alignment and domain information
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03059 beta-galactosidase; Provisional Back     alignment and domain information
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition Back     alignment and domain information
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03059 beta-galactosidase; Provisional Back     alignment and domain information
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA) Back     alignment and domain information
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity [] Back     alignment and domain information
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins Back     alignment and domain information
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins Back     alignment and domain information
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity [] Back     alignment and domain information
>PRK11114 cellulose synthase regulator protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
3muz_1 1052 E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex 1e-46
3sep_A 1052 E. Coli (Lacz) Beta-Galactosidase (S796a) Length = 1e-46
3vd5_A 1052 E. Coli (Lacz) Beta-Galactosidase (N460s) Length = 1e-46
3vda_A 1052 E. Coli (Lacz) Beta-Galactosidase (N460t) Length = 1e-46
3vd3_A 1052 E. Coli (Lacz) Beta-Galactosidase (N460d) Length = 1e-46
3t0a_A 1052 E. Coli (Lacz) Beta-Galactosidase (S796t) Length = 1e-46
3t2o_A 1052 E. Coli (Lacz) Beta-Galactosidase (S796d) Length = 1e-46
1f49_A 1023 E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained 1e-46
1bgm_I 1023 Beta-Galactosidase (Chains I-P) Length = 1023 1e-46
1f4a_A 1021 E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained 2e-46
3dyo_A 1023 E. Coli (Lacz) Beta-Galactosidase (H418n) In Comple 2e-46
3muy_1 1023 E. Coli (Lacz) Beta-Galactosidase (R599a) Length = 2e-46
3czj_A 1023 "e. Coli (Lacz) Beta-Galactosidase (N460t) In Compl 2e-46
3dym_A 1023 E. Coli (Lacz) Beta-Galactosidase (H418e) Length = 2e-46
1dp0_A 1023 E. Coli Beta-Galactosidase At 1.7 Angstrom Length = 2e-46
3iaq_A 1023 E. Coli (Lacz) Beta-Galactosidase (E416v) Length = 2e-46
1jz8_A 1023 E. Coli (lacz) Beta-galactosidase (e537q) In Comple 2e-46
3i3b_A 1023 E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex 2e-46
3iap_A 1023 E. Coli (Lacz) Beta-Galactosidase (E416q) Length = 2e-46
1px3_A 1023 E. Coli (Lacz) Beta-Galactosidase (G794a) Length = 2e-46
1jz7_A 1023 E. Coli (Lacz) Beta-Galactosidase In Complex With G 3e-46
3bga_A 1010 Crystal Structure Of Beta-Galactosidase From Bacter 2e-40
3dec_A 1000 Crystal Structure Of A Glycosyl Hydrolases Family 2 9e-40
1yq2_A 1024 Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoe 9e-38
3ob8_A 1032 Structure Of The Beta-Galactosidase From Kluyveromy 1e-29
3k46_A 605 Crystal Structure Of Full-Length E. Coli Beta-Glucu 4e-10
3lpf_A 605 Structure Of E. Coli Beta-Glucuronidase Bound With 6e-10
3k4a_A 605 Crystal Structure Of Selenomethionine Substituted E 6e-10
3gm8_A 801 Crystal Structure Of A Beta-glycosidase From Bacter 2e-07
3cmg_A 667 Crystal Structure Of Putative Beta-Galactosidase Fr 2e-04
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With Iptg Length = 1052 Back     alignment and structure 
Iteration: 1

 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 89  VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 148
           ++SL+G W+F    +P  VP ++ +    ++  + + VPSNWQMHG+D PIYTNV YP  
Sbjct: 80  LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 137
Query: 149 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 207
           ++PP VP ENPTGCY   F++ + W Q  +  + F+ V+SAF  W NG  VGY QDSRLP
Sbjct: 138 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 197
Query: 208 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 267
           +EF++S +        +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP   I+D
Sbjct: 198 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 253
Query: 268 YFFKSNLAEDFSLA--DIQVNTC 288
           +   +   +DFS A  + +V  C
Sbjct: 254 FHVATRFNDDFSRAVLEAEVQMC 276
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Length = 1052 Back     alignment and structure
>pdb|3VD5|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) Length = 1052 Back     alignment and structure
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) Length = 1052 Back     alignment and structure
>pdb|3VD3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d) Length = 1052 Back     alignment and structure
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Length = 1052 Back     alignment and structure
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) Length = 1052 Back     alignment and structure
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained Monomer- Monoclinic) Length = 1023 Back     alignment and structure
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P) Length = 1023 Back     alignment and structure
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) Length = 1021 Back     alignment and structure
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With Iptg Length = 1023 Back     alignment and structure
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) Length = 1023 Back     alignment and structure
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With D- Galctopyranosyl-1-One" Length = 1023 Back     alignment and structure
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e) Length = 1023 Back     alignment and structure
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom Length = 1023 Back     alignment and structure
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v) Length = 1023 Back     alignment and structure
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With Allolactose Length = 1023 Back     alignment and structure
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With D- Galactopyranosyl-1-On Length = 1023 Back     alignment and structure
>pdb|3IAP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416q) Length = 1023 Back     alignment and structure
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) Length = 1023 Back     alignment and structure
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galactose Length = 1023 Back     alignment and structure
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides Thetaiotaomicron Vpi-5482 Length = 1010 Back     alignment and structure
>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2 Protein From Bacteroides Thetaiotaomicron Length = 1000 Back     alignment and structure
>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme C2- 2-1) Length = 1024 Back     alignment and structure
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces Lactis In Complex With Galactose Length = 1032 Back     alignment and structure
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli Beta-Glucuronidase Length = 605 Back     alignment and structure
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A Novel, Potent Inhibitor 1-((6,7-Dimethyl-2-Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)-1- (2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea Length = 605 Back     alignment and structure
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli Beta- Glucuronidase Length = 605 Back     alignment and structure
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides Vulgatus Length = 801 Back     alignment and structure
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From Bacteroides Fragilis Length = 667 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 1e-101
1jz7_A 1023 Lactase, beta-galactosidase, LACZ; TIM barrel (alp 1e-100
3oba_A 1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 4e-93
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 2e-91
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 4e-71
3hn3_A 613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 2e-64
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 1e-61
3cmg_A 667 Putative beta-galactosidase; structural genomics, 4e-34
3fn9_A 692 Putative beta-galactosidase; structural genomics, 6e-27
2vzs_A 1032 CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, 4e-25
2je8_A 848 Beta-mannosidase; glycoside hydrolase, hydrolase; 1e-09
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Length = 1010 Back     alignment and structure
 Score =  316 bits (811), Expect = e-101
 Identities = 88/285 (30%), Positives = 130/285 (45%), Gaps = 43/285 (15%)

Query: 12  LENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDA 71
           +        W+    +   K  PH  +  +       K                      
Sbjct: 1   MSLKQPLPEWQSQYAVGLNKLAPHTYVWPYADASDIGKPGGYEQS--------------- 45

Query: 72  VHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQ 131
                          P+  SL+G WKF    +P + P +F++ S+    W  I VP NW+
Sbjct: 46  ---------------PYYMSLNGKWKFNWVKNPDNRPKDFYQPSYYTGGWADINVPGNWE 90

Query: 132 MHGFDRPIYTNVVYPF-------PLDPPNVP-AENPTGCYRTYFHIPKEWQGRRILLHFE 183
             G+   IY N  Y F         +PP VP AEN  G YR  F +P +W+GRR++L  E
Sbjct: 91  RQGYGTAIYVNETYEFDDKMFNFKKNPPLVPFAENEVGSYRRTFKVPADWKGRRVVLCCE 150

Query: 184 AVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQ 243
            V S +  W+NG  +GY+Q S+  AE++I+D         +NV+A++V+RWS G+YLE Q
Sbjct: 151 GVISFYYVWVNGKLLGYNQGSKTAAEWDITDVLSEG----ENVVALEVYRWSSGAYLECQ 206

Query: 244 DHWWLSGIHRDVLLLAKPQVFIADYFFKSNL-AEDFSLADIQVNT 287
           D W LSGI RDV L + P+ +IADY   ++L  E +      +  
Sbjct: 207 DMWRLSGIERDVYLYSTPKQYIADYKVSASLDKEKYKEGIFNLEV 251
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ... Length = 1023 Back     alignment and structure
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Length = 1032 Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Length = 1024 Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Length = 605 Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Length = 613 Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Length = 801 Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Length = 667 Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Length = 692 Back     alignment and structure
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A* Length = 1032 Back     alignment and structure
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Length = 848 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query290
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 100.0
3oba_A 1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 100.0
1jz7_A 1023 Lactase, beta-galactosidase, LACZ; TIM barrel (alp 100.0
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 100.0
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 100.0
3hn3_A 613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 100.0
3fn9_A 692 Putative beta-galactosidase; structural genomics, 100.0
3cmg_A 667 Putative beta-galactosidase; structural genomics, 100.0
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 100.0
2vzs_A 1032 CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, 100.0
2je8_A 848 Beta-mannosidase; glycoside hydrolase, hydrolase; 99.96
1tg7_A 971 Beta-galactosidase; TIM barrel domain, glycoside h 99.36
3og2_A 1003 Beta-galactosidase; TIM barrel domain, glycoside h 99.15
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 98.6
2okx_A 956 Rhamnosidase B; alpha barrel, glycoside hydrolase 98.13
3d3a_A 612 Beta-galactosidase; protein structure initiative I 97.03
3og2_A1003 Beta-galactosidase; TIM barrel domain, glycoside h 96.79
3d3a_A612 Beta-galactosidase; protein structure initiative I 96.01
3cih_A 739 Putative alpha-rhamnosidase; structural genomics, 95.55
4e8d_A595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 94.51
3thd_A 654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 93.33
4e8d_A595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 92.07
3thd_A654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 90.21
3pe9_A98 Fibronectin(III)-like module; CBHA, beta-sandwich, 83.83
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Back     alignment and structure
Probab=100.00  E-value=4.2e-54  Score=452.95  Aligned_cols=237  Identities=36%  Similarity=0.700  Sum_probs=218.1

Q ss_pred             CCCCCCCccccccccCCCCCCccccCCHHHHhhhhhccccccccccCCccccchhhhhhhhhccccCCCCCceEecCccc
Q 022918           17 GYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHW   96 (290)
Q Consensus        17 ~~~~w~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~sLnG~W   96 (290)
                      ..+.||||+|+++||||+||+|+||++.++|+... .+                             ..++..++|||.|
T Consensus         6 ~~~~w~~~~v~~~nr~~~~a~~~~~~~~~~a~~~~-~~-----------------------------~~s~~~~~LnG~W   55 (1010)
T 3bga_A            6 PLPEWQSQYAVGLNKLAPHTYVWPYADASDIGKPG-GY-----------------------------EQSPYYMSLNGKW   55 (1010)
T ss_dssp             -CCGGGCSSCCBSSCCCCCCCCCCCSCGGGGGSTT-GG-----------------------------GGSTTEEECCEEE
T ss_pred             cccCCCCCcccccCCCCCCCCccCcCCHHHHhhcc-cc-----------------------------ccCceEEecCCCc
Confidence            34679999999999999999999999999887510 00                             1246889999999


Q ss_pred             eEEeecCCCCCCccccCCCCCCCCCeEecCCcccccccCCCCcccccccCC-------CCCCCCCCCC-CCeEEEEEEEE
Q 022918           97 KFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPF-------PLDPPNVPAE-NPTGCYRTYFH  168 (290)
Q Consensus        97 kF~~~~~~~~~p~~~~~~~~d~~~W~~i~VP~~w~~~g~~~p~y~n~~yp~-------~~~pp~vp~~-~~~gwYrr~F~  168 (290)
                      +|++.+.+...|++|+++++++++|..|.|||+|+++|++.|+|+|+.|||       +.+||++|.+ ++++||||+|+
T Consensus        56 ~F~~~~~~~~~~~~~~~~~~~~s~W~~i~VP~~w~~~g~~~p~y~n~~~p~~~~~~~~~~~~p~vp~~~~~~~~Yrr~F~  135 (1010)
T 3bga_A           56 KFNWVKNPDNRPKDFYQPSYYTGGWADINVPGNWERQGYGTAIYVNETYEFDDKMFNFKKNPPLVPFAENEVGSYRRTFK  135 (1010)
T ss_dssp             EEEEEESGGGSCTTTTSTTSCCTTSEEEEESSCGGGGTSSCCEEESSSCTTSBGGGTBCCBTTBCCSTTCEEEEEEEEEE
T ss_pred             cEEECCCcccCchhhhcCCCCcCCCeEEecCCcHHHcCCCCcccccccccccccccccccCCCCcccccCcEEEEEEEeE
Confidence            999998888889999999999999999999999999999999999999999       6799999866 99999999999


Q ss_pred             cCCCCCCCeEEEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEecCCCCcccCCCCCcc
Q 022918          169 IPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWL  248 (290)
Q Consensus       169 lp~~~~~~~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~~dgs~ledqd~w~~  248 (290)
                      +|+.|++++++|+|+||++.++|||||++||+|+++|+|++||||++|++   |+ |+|+|+|.+|++|+|+++||+|++
T Consensus       136 vp~~~~g~~v~L~F~gv~~~a~V~vNG~~vG~~~gg~~p~~~DIT~~L~~---G~-N~L~V~V~~~~d~s~~e~~d~w~~  211 (1010)
T 3bga_A          136 VPADWKGRRVVLCCEGVISFYYVWVNGKLLGYNQGSKTAAEWDITDVLSE---GE-NVVALEVYRWSSGAYLECQDMWRL  211 (1010)
T ss_dssp             CCGGGTTSEEEEEESCEESEEEEEETTEEEEEEECSSSCEEEECGGGCCS---SE-EEEEEEEESCCGGGGGBCCSEEEC
T ss_pred             eCcccCCCEEEEEECCCCceeEEEECCEEEeeEeCCCCcceeehhhhccC---CC-cEEEEEEEecCCCcccccCCcccc
Confidence            99999999999999999999999999999999999999999999999999   95 999999999999999999999999


Q ss_pred             ccccccceeeEecCccEEeEEEEEeec-CCceeEEEEEEE
Q 022918          249 SGIHRDVLLLAKPQVFIADYFFKSNLA-EDFSLADIQVNT  287 (290)
Q Consensus       249 sGI~RdV~L~~~p~~~I~D~~v~t~ld-~~~~~~~l~v~v  287 (290)
                      +||||+|+|+++|++||+|++|+++++ ++++.|+|+|++
T Consensus       212 sGI~R~V~L~~~p~~~I~d~~v~t~~~~~~~~~a~l~v~v  251 (1010)
T 3bga_A          212 SGIERDVYLYSTPKQYIADYKVSASLDKEKYKEGIFNLEV  251 (1010)
T ss_dssp             CEECSCEEEEEECSSEEEEEEEEEEECTTTSCSEEEEEEE
T ss_pred             CCcceEEEEEEeCCceEeeEEEEEeecccCCceEEEEEEE
Confidence            999999999999999999999999998 777777777655
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Back     alignment and structure
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ... Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Back     alignment and structure
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A* Back     alignment and structure
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP} Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Back     alignment and structure
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Back     alignment and structure
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 290
d1yq2a3216 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacte 7e-46
d1jz8a3207 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichi 1e-43
d2vzsa4184 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolato 2e-32
d1bhga2204 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Hom 7e-29
d1tg7a2182 b.18.1.27 (A:667-848) Beta-galactosidase LacA, dom 2e-23
d2je8a4192 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides 4e-22
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Length = 216 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: beta-Galactosidase/glucuronidase, N-terminal domain
domain: beta-Galactosidase
species: Arthrobacter sp. c2-2 [TaxId: 192168]

 Score =  151 bits (383), Expect = 7e-46
 Identities = 79/189 (41%), Positives = 104/189 (55%), Gaps = 22/189 (11%)

Query: 91  SLSGHWKFFLASSPPDV------------PLNFHKSSFQDSKWEAIPVPSNWQM---HGF 135
           SL+G W+F L  + P                     S+ D+ W+ +PVPS+W M     +
Sbjct: 31  SLNGDWRFRLLPAAPGTAGAGSVLPSGETVEGVAAESYDDAAWDTLPVPSHWVMGQDGKY 90

Query: 136 DRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIP---KEWQGRRILLHFEAVDSAFCAW 192
            RPIYTNV YPFP+DPP+VP  NPTG +R  F +P    E     + L F+ V+S +  W
Sbjct: 91  GRPIYTNVQYPFPIDPPHVPDANPTGDFRRRFDVPAQWFESTTAALTLRFDGVESRYKVW 150

Query: 193 INGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIH 252
           +NG  +G    SRL  EF++SD          N+L V+V +WS  SYLEDQD WWL GI 
Sbjct: 151 VNGQEIGVGSGSRLAQEFDVSDALRA----GSNLLVVRVHQWSAASYLEDQDQWWLPGIF 206

Query: 253 RDVLLLAKP 261
           RDV L A+P
Sbjct: 207 RDVTLQARP 215
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Length = 207 Back     information, alignment and structure
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Length = 184 Back     information, alignment and structure
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]} Length = 204 Back     information, alignment and structure
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Length = 182 Back     information, alignment and structure
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 192 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query290
d1jz8a3207 beta-Galactosidase {Escherichia coli [TaxId: 562]} 100.0
d1yq2a3216 beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 100.0
d1bhga2204 beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9 100.0
d2je8a4192 Beta-mannosidase {Bacteroides thetaiotaomicron [Ta 99.96
d2vzsa4184 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 99.96
d1tg7a2182 Beta-galactosidase LacA, domains 4 and 5 {Penicill 99.94
d1tg7a3163 Beta-galactosidase LacA, domains 4 and 5 {Penicill 97.86
d1nkga2171 Rhamnogalacturonase B, RhgB, C-terminal domain {As 83.59
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: beta-Galactosidase/glucuronidase, N-terminal domain
domain: beta-Galactosidase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-53  Score=372.95  Aligned_cols=206  Identities=45%  Similarity=0.855  Sum_probs=191.9

Q ss_pred             CCCCCCccccccccCCCCCCccccCCHHHHhhhhhccccccccccCCccccchhhhhhhhhccccCCCCCceEecCccce
Q 022918           18 YKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWK   97 (290)
Q Consensus        18 ~~~w~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~sLnG~Wk   97 (290)
                      +++||||+|++||||||||+|++|.+.+.|+..                                 ..|+..++|||.|+
T Consensus         1 ~~~w~~~~~~~~nrl~~~s~~~~~~~~~~a~~~---------------------------------~~sr~~~sLnG~W~   47 (207)
T d1jz8a3           1 RRDWENPGVTQLNRLAAHPPFASWRNSEEARTD---------------------------------RPSQQLRSLNGEWR   47 (207)
T ss_dssp             CCGGGCTTCSEESCCCCCSCCCCBSSHHHHHHT---------------------------------CCCTTEEECCEEEE
T ss_pred             CCCccCcccccccCcCCCCCccccCCHHHHhhC---------------------------------CCccceEccCCcee
Confidence            368999999999999999999999999988642                                 24678999999999


Q ss_pred             EEeecCCCCCCccccCCCCCCCCCeEecCCcccccccCCCCcccccccCCCCCCCCCCCCCCeEEEEEEEEcCCCC-CCC
Q 022918           98 FFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEW-QGR  176 (290)
Q Consensus        98 F~~~~~~~~~p~~~~~~~~d~~~W~~i~VP~~w~~~g~~~p~y~n~~yp~~~~pp~vp~~~~~gwYrr~F~lp~~~-~~~  176 (290)
                      |++.+.+.+.+..|+..++  +.|..|.||++|+.+|++.+.|++..|++...++.++..++++||||+|.||++| +|+
T Consensus        48 F~~~~~~~~~~~~~~~~~~--~~~~~i~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wY~r~f~ip~~~~~~~  125 (207)
T d1jz8a3          48 FAWFPAPEAVPESWLECDL--PEADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVPTENPTGCYSLTFNVDESWLQEG  125 (207)
T ss_dssp             EEEESSGGGSCTHHHHSCC--TTCEEEEESCCGGGGTSSCCEEESSSCSSCSCTTCCCSSCCEEEEEEEEEECHHHHSSS
T ss_pred             eEEccCccccccccccCCC--CccceeccccceeecCCCCcccccccccccccCccccccCceEEEEEEeEecccccCCC
Confidence            9999988888888877654  5699999999999999999999999999999999988889999999999999998 799


Q ss_pred             eEEEEeCCccceeEEEEcCEEeeeccCCCCceeeccccccccCCCCCceEEEEEEEecCCCCcccCCCCCccccccccce
Q 022918          177 RILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVL  256 (290)
Q Consensus       177 ~v~L~fegv~s~~~VwvNG~~VG~~~~~~~p~efDIT~~Lk~~~~G~eN~L~V~V~~~~dgs~ledqd~w~~sGI~RdV~  256 (290)
                      +++|+|+||++.++|||||++||+|+|+|+|++||||++|++   |+ |+|+|+|.+++|++++++||+|+++||||+|+
T Consensus       126 ~i~L~f~gv~~~a~V~vNG~~vG~~~gg~~pf~fDiT~~l~~---G~-N~L~V~V~~~~d~~~~~~~d~~~~~GI~r~V~  201 (207)
T d1jz8a3         126 QTRIIFDGVNSAFHLWCNGRWVGYGQDSRLPSEFDLSAFLRA---GE-NRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVS  201 (207)
T ss_dssp             EEEEEESCEESEEEEEETTEEEEEEECTTSCEEEECTTTCCS---EE-EEEEEEEESCCGGGGGBCCSEEECCEECSCEE
T ss_pred             EEEEEecccceEEEEEECCEEEEEecCCCcCEEEeChhcccC---Cc-eEEEEEEEeCCCCCccCcCcccccCCCCeEEE
Confidence            999999999999999999999999999999999999999999   95 99999999999999999999999999999999


Q ss_pred             eeEecC
Q 022918          257 LLAKPQ  262 (290)
Q Consensus       257 L~~~p~  262 (290)
                      |+++|.
T Consensus       202 L~~~P~  207 (207)
T d1jz8a3         202 LLHKPT  207 (207)
T ss_dssp             EEEECS
T ss_pred             EEEeCC
Confidence            999984
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1tg7a3 b.18.1.27 (A:849-1011) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure